locus-tag class description C1C92_00070 PF00448 SRP54-type protein, GTPase domain C1C92_00075 PF00771 FHIPEP family C1C92_00080 PF01312 FlhB HrpN YscU SpaS Family C1C92_00085 PF01311 Bacterial export proteins, family 1 C1C92_00090 PF01313 Bacterial export proteins, family 3 C1C92_00095 PF00813 FliP family C1C92_00100 PF04347 Flagellar biosynthesis protein, FliO C1C92_00105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C1C92_00110 PF02154 Flagellar motor switch protein FliM C1C92_00110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C1C92_00130 PF18269 T3SS EscN ATPase C-terminal domain C1C92_00130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C1C92_00140 PF14842 FliG N-terminal domain C1C92_00140 PF14841 FliG middle domain C1C92_00140 PF01706 FliG C-terminal domain C1C92_00145 PF08345 Flagellar M-ring protein C-terminal C1C92_00145 PF01514 Secretory protein of YscJ/FliF family C1C92_00150 PF02049 Flagellar hook-basal body complex protein FliE C1C92_00165 PF03960 ArsC family C1C92_00170 PF01758 Sodium Bile acid symporter family C1C92_00175 PF01022 Bacterial regulatory protein, arsR family C1C92_00180 PF00072 Response regulator receiver domain C1C92_00185 PF00919 Uncharacterized protein family UPF0004 C1C92_00185 PF18693 TRAM domain C1C92_00185 PF04055 Radical SAM superfamily C1C92_00190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_00195 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_00200 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_00200 PF12911 N-terminal TM domain of oligopeptide transport permease C C1C92_00205 PF00005 ABC transporter C1C92_00205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_00210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_00210 PF00005 ABC transporter C1C92_00220 PF01869 BadF/BadG/BcrA/BcrD ATPase family C1C92_00230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_00230 PF08447 PAS fold C1C92_00240 PF08272 Topoisomerase I zinc-ribbon-like C1C92_00240 PF01131 DNA topoisomerase C1C92_00240 PF01396 Topoisomerase DNA binding C4 zinc finger C1C92_00240 PF01751 Toprim domain C1C92_00245 PF04996 Succinylarginine dihydrolase C1C92_00250 PF01343 Peptidase family S49 C1C92_00250 PF08496 Peptidase family S49 N-terminal C1C92_00255 PF00106 short chain dehydrogenase C1C92_00260 PF03466 LysR substrate binding domain C1C92_00260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_00265 PF07690 Major Facilitator Superfamily C1C92_00270 PF00155 Aminotransferase class I and II C1C92_00280 PF03466 LysR substrate binding domain C1C92_00280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_00290 PF01161 Phosphatidylethanolamine-binding protein C1C92_00300 PF01204 Trehalase C1C92_00305 PF00579 tRNA synthetases class I (W and Y) C1C92_00310 PF08525 Opacity-associated protein A N-terminal motif C1C92_00310 PF01551 Peptidase family M23 C1C92_00310 PF01476 LysM domain C1C92_00315 PF03702 Anhydro-N-acetylmuramic acid kinase C1C92_00355 PF00456 Transketolase, thiamine diphosphate binding domain C1C92_00355 PF02780 Transketolase, C-terminal domain C1C92_00355 PF02779 Transketolase, pyrimidine binding domain C1C92_00360 PF02773 S-adenosylmethionine synthetase, C-terminal domain C1C92_00360 PF02772 S-adenosylmethionine synthetase, central domain C1C92_00360 PF00438 S-adenosylmethionine synthetase, N-terminal domain C1C92_00365 PF17283 SprT-like zinc ribbon domain C1C92_00365 PF10263 SprT-like family C1C92_00370 PF04231 Endonuclease I C1C92_00375 PF04452 RNA methyltransferase C1C92_00380 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C1C92_00380 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C1C92_00385 PF02622 Uncharacterized ACR, COG1678 C1C92_00390 PF03652 Holliday junction resolvase C1C92_00395 PF03466 LysR substrate binding domain C1C92_00395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_00400 PF07690 Major Facilitator Superfamily C1C92_00405 PF00144 Beta-lactamase C1C92_00410 PF01235 Sodium:alanine symporter family C1C92_00415 PF00923 Transaldolase/Fructose-6-phosphate aldolase C1C92_00430 PF03167 Uracil DNA glycosylase superfamily C1C92_00435 PF01228 Glycine radical C1C92_00440 PF00375 Sodium:dicarboxylate symporter family C1C92_00445 PF00793 DAHP synthetase I family C1C92_00450 PF13369 Transglutaminase-like superfamily C1C92_00460 PF13847 Methyltransferase domain C1C92_00460 PF17827 PrmC N-terminal domain C1C92_00465 PF03462 PCRF domain C1C92_00465 PF00472 RF-1 domain C1C92_00470 PF01488 Shikimate / quinate 5-dehydrogenase C1C92_00470 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C1C92_00470 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C1C92_00475 PF03550 Outer membrane lipoprotein LolB C1C92_00480 PF08544 GHMP kinases C terminal C1C92_00480 PF00288 GHMP kinases N terminal domain C1C92_00490 PF14572 Phosphoribosyl synthetase-associated domain C1C92_00490 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C1C92_00495 PF01195 Peptidyl-tRNA hydrolase C1C92_00500 PF01926 50S ribosome-binding GTPase C1C92_00500 PF06071 Protein of unknown function (DUF933) C1C92_00545 PF02080 TrkA-C domain C1C92_00545 PF03600 Citrate transporter C1C92_00555 PF07859 alpha/beta hydrolase fold C1C92_00570 PF13419 Haloacid dehalogenase-like hydrolase C1C92_00595 PF00171 Aldehyde dehydrogenase family C1C92_00600 PF04958 Arginine N-succinyltransferase beta subunit C1C92_00605 PF00202 Aminotransferase class-III C1C92_00610 PF00117 Glutamine amidotransferase class-I C1C92_00620 PF00579 tRNA synthetases class I (W and Y) C1C92_00625 PF13419 Haloacid dehalogenase-like hydrolase C1C92_00630 PF00834 Ribulose-phosphate 3 epimerase family C1C92_00635 PF02086 D12 class N6 adenine-specific DNA methyltransferase C1C92_00640 PF05036 Sporulation related domain C1C92_00645 PF01761 3-dehydroquinate synthase C1C92_00650 PF01202 Shikimate kinase C1C92_00655 PF07660 Secretin and TonB N terminus short domain C1C92_00655 PF03958 Bacterial type II/III secretion system short domain C1C92_00655 PF00263 Bacterial type II and III secretion system protein C1C92_00655 PF11741 AMIN domain C1C92_00680 PF17092 Penicillin-binding protein OB-like domain C1C92_00680 PF00912 Transglycosylase C1C92_00680 PF00905 Penicillin binding protein transpeptidase domain C1C92_00685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_00685 PF03466 LysR substrate binding domain C1C92_00700 PF03466 LysR substrate binding domain C1C92_00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_00710 PF01476 LysM domain C1C92_00710 PF01551 Peptidase family M23 C1C92_00710 PF08525 Opacity-associated protein A N-terminal motif C1C92_00720 PF12794 Mechanosensitive ion channel inner membrane domain 1 C1C92_00720 PF12795 Mechanosensitive ion channel porin domain C1C92_00720 PF00924 Mechanosensitive ion channel C1C92_00725 PF03009 Glycerophosphoryl diester phosphodiesterase family C1C92_00730 PF00672 HAMP domain C1C92_00730 PF02743 Cache domain C1C92_00730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_00735 PF02910 Fumarate reductase flavoprotein C-term C1C92_00735 PF00890 FAD binding domain C1C92_00740 PF13183 4Fe-4S dicluster domain C1C92_00740 PF13085 2Fe-2S iron-sulfur cluster binding domain C1C92_00745 PF02300 Fumarate reductase subunit C C1C92_00750 PF02313 Fumarate reductase subunit D C1C92_00765 PF06224 Winged helix DNA-binding domain C1C92_00780 PF00501 AMP-binding enzyme C1C92_00790 PF00106 short chain dehydrogenase C1C92_00800 PF00486 Transcriptional regulatory protein, C terminal C1C92_00800 PF00072 Response regulator receiver domain C1C92_00805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_00805 PF08521 Two-component sensor kinase N-terminal C1C92_00805 PF00512 His Kinase A (phospho-acceptor) domain C1C92_00810 PF18030 RimK PreATP-grasp domain C1C92_00810 PF08443 RimK-like ATP-grasp domain C1C92_00815 PF00478 IMP dehydrogenase / GMP reductase domain C1C92_00825 PF09285 Elongation factor P, C-terminal C1C92_00825 PF01132 Elongation factor P (EF-P) OB domain C1C92_00825 PF08207 Elongation factor P (EF-P) KOW-like domain C1C92_00830 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_00840 PF03180 NLPA lipoprotein C1C92_00845 PF14226 non-haem dioxygenase in morphine synthesis N-terminal C1C92_00845 PF03171 2OG-Fe(II) oxygenase superfamily C1C92_00855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C1C92_00855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C1C92_00865 PF17152 Periplasmic sensor domain C1C92_00865 PF00990 Diguanylate cyclase, GGDEF domain C1C92_00875 PF00990 Diguanylate cyclase, GGDEF domain C1C92_00880 PF13419 Haloacid dehalogenase-like hydrolase C1C92_00890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_00890 PF03466 LysR substrate binding domain C1C92_00895 PF00857 Isochorismatase family C1C92_00900 PF01494 FAD binding domain C1C92_00910 PF02562 PhoH-like protein C1C92_00915 PF02130 Uncharacterized protein family UPF0054 C1C92_00920 PF03471 Transporter associated domain C1C92_00920 PF00571 CBS domain C1C92_00925 PF00795 Carbon-nitrogen hydrolase C1C92_00930 PF07295 Zinc-ribbon containing domain C1C92_00935 PF13603 Leucyl-tRNA synthetase, Domain 2 C1C92_00935 PF00133 tRNA synthetases class I (I, L, M and V) C1C92_00935 PF08264 Anticodon-binding domain of tRNA C1C92_00950 PF01467 Cytidylyltransferase-like C1C92_00960 PF02590 Predicted SPOUT methyltransferase C1C92_00965 PF03717 Penicillin-binding Protein dimerisation domain C1C92_00965 PF00905 Penicillin binding protein transpeptidase domain C1C92_00970 PF01098 Cell cycle protein C1C92_00975 PF13406 Transglycosylase SLT domain C1C92_00980 PF05036 Sporulation related domain C1C92_00980 PF03330 Lytic transglycolase C1C92_00985 PF00768 D-alanyl-D-alanine carboxypeptidase C1C92_00985 PF07943 Penicillin-binding protein 5, C-terminal domain C1C92_00990 PF04359 Protein of unknown function (DUF493) C1C92_00995 PF03099 Biotin/lipoate A/B protein ligase family C1C92_01000 PF04055 Radical SAM superfamily C1C92_01000 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family C1C92_01010 PF02508 Rnf-Nqr subunit, membrane protein C1C92_01025 PF13411 MerR HTH family regulatory protein C1C92_01030 PF01368 DHH family C1C92_01030 PF17768 RecJ OB domain C1C92_01030 PF02272 DHHA1 domain C1C92_01040 PF01741 Large-conductance mechanosensitive channel, MscL C1C92_01045 PF02899 Phage integrase, N-terminal SAM-like domain C1C92_01045 PF00589 Phage integrase family C1C92_01050 PF00258 Flavodoxin C1C92_01055 PF01523 Putative modulator of DNA gyrase C1C92_01060 PF01523 Putative modulator of DNA gyrase C1C92_01070 PF03734 L,D-transpeptidase catalytic domain C1C92_01070 PF17969 L,D-transpeptidase C-terminal domain C1C92_01080 PF12838 4Fe-4S dicluster domain C1C92_01095 PF06476 Protein of unknown function (DUF1090) C1C92_01100 PF02635 DsrE/DsrF-like family C1C92_01105 PF07690 Major Facilitator Superfamily C1C92_01110 PF00013 KH domain C1C92_01110 PF03725 3' exoribonuclease family, domain 2 C1C92_01110 PF00575 S1 RNA binding domain C1C92_01110 PF01138 3' exoribonuclease family, domain 1 C1C92_01110 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C1C92_01115 PF00312 Ribosomal protein S15 C1C92_01120 PF01509 TruB family pseudouridylate synthase (N terminal domain) C1C92_01120 PF09157 Pseudouridine synthase II TruB, C-terminal C1C92_01120 PF16198 tRNA pseudouridylate synthase B C-terminal domain C1C92_01125 PF02033 Ribosome-binding factor A C1C92_01130 PF11987 Translation-initiation factor 2 C1C92_01130 PF04760 Translation initiation factor IF-2, N-terminal region C1C92_01130 PF08364 Bacterial translation initiation factor IF-2 associated region C1C92_01130 PF00009 Elongation factor Tu GTP binding domain C1C92_01135 PF08529 NusA N-terminal domain C1C92_01135 PF13184 NusA-like KH domain C1C92_01135 PF00575 S1 RNA binding domain C1C92_01140 PF02576 RimP N-terminal domain C1C92_01140 PF17384 RimP C-terminal SH3 domain C1C92_01155 PF03840 Preprotein translocase SecG subunit C1C92_01160 PF00121 Triosephosphate isomerase C1C92_01165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C1C92_01165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C1C92_01165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C1C92_01165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C1C92_01170 PF00809 Pterin binding enzyme C1C92_01175 PF06480 FtsH Extracellular C1C92_01175 PF01434 Peptidase family M41 C1C92_01175 PF00004 ATPase family associated with various cellular activities (AAA) C1C92_01175 PF17862 AAA+ lid domain C1C92_01180 PF01728 FtsJ-like methyltransferase C1C92_01185 PF01985 CRS1 / YhbY (CRM) domain C1C92_01195 PF03449 Transcription elongation factor, N-terminal C1C92_01195 PF01272 Transcription elongation factor, GreA/GreB, C-term C1C92_01200 PF13677 Membrane MotB of proton-channel complex MotA/MotB C1C92_01200 PF00691 OmpA family C1C92_01205 PF01618 MotA/TolQ/ExbB proton channel family C1C92_01210 PF02609 Exonuclease VII small subunit C1C92_01215 PF00348 Polyprenyl synthetase C1C92_01220 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C1C92_01220 PF02779 Transketolase, pyrimidine binding domain C1C92_01220 PF02780 Transketolase, C-terminal domain C1C92_01235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_01240 PF00005 ABC transporter C1C92_01240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_01245 PF04608 Phosphatidylglycerophosphatase A C1C92_01250 PF00586 AIR synthase related protein, N-terminal domain C1C92_01250 PF02769 AIR synthase related protein, C-terminal domain C1C92_01255 PF01029 NusB family C1C92_01260 PF00885 6,7-dimethyl-8-ribityllumazine synthase C1C92_01265 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C1C92_01265 PF00925 GTP cyclohydrolase II C1C92_01270 PF00677 Lumazine binding domain C1C92_01275 PF01872 RibD C-terminal domain C1C92_01275 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C1C92_01280 PF03477 ATP cone domain C1C92_01300 PF00580 UvrD/REP helicase N-terminal domain C1C92_01300 PF13361 UvrD-like helicase C-terminal domain C1C92_01310 PF13657 HipA N-terminal domain C1C92_01310 PF07804 HipA-like C-terminal domain C1C92_01340 PF00464 Serine hydroxymethyltransferase C1C92_01355 PF02613 Nitrate reductase delta subunit C1C92_01365 PF03707 Bacterial signalling protein N terminal repeat C1C92_01365 PF00990 Diguanylate cyclase, GGDEF domain C1C92_01365 PF00563 EAL domain C1C92_01370 PF13193 AMP-binding enzyme C-terminal domain C1C92_01370 PF00501 AMP-binding enzyme C1C92_01370 PF16177 Acetyl-coenzyme A synthetase N-terminus C1C92_01375 PF01220 Dehydroquinase class II C1C92_01380 PF00364 Biotin-requiring enzyme C1C92_01385 PF02785 Biotin carboxylase C-terminal domain C1C92_01385 PF00289 Biotin carboxylase, N-terminal domain C1C92_01385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C1C92_01390 PF06196 Protein of unknown function (DUF997) C1C92_01395 PF00474 Sodium:solute symporter family C1C92_01400 PF02378 Phosphotransferase system, EIIC C1C92_01400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C1C92_01400 PF00367 phosphotransferase system, EIIB C1C92_01405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_01405 PF03466 LysR substrate binding domain C1C92_01410 PF08240 Alcohol dehydrogenase GroES-like domain C1C92_01410 PF00107 Zinc-binding dehydrogenase C1C92_01420 PF12464 Maltose acetyltransferase C1C92_01420 PF00132 Bacterial transferase hexapeptide (six repeats) C1C92_01425 PF02743 Cache domain C1C92_01425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_01425 PF00672 HAMP domain C1C92_01430 PF00881 Nitroreductase family C1C92_01440 PF01343 Peptidase family S49 C1C92_01455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C1C92_01455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C1C92_01460 PF07023 Protein of unknown function (DUF1315) C1C92_01465 PF17763 Glutaminase/Asparaginase C-terminal domain C1C92_01465 PF00710 Asparaginase, N-terminal C1C92_01470 PF03616 Sodium/glutamate symporter C1C92_01475 PF02743 Cache domain C1C92_01475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_01475 PF00672 HAMP domain C1C92_01485 PF01336 OB-fold nucleic acid binding domain C1C92_01485 PF00152 tRNA synthetases class II (D, K and N) C1C92_01490 PF02567 Phenazine biosynthesis-like protein C1C92_01495 PF00258 Flavodoxin C1C92_01495 PF00667 FAD binding domain C1C92_01495 PF00175 Oxidoreductase NAD-binding domain C1C92_01500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C1C92_01500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C1C92_01505 PF01507 Phosphoadenosine phosphosulfate reductase family C1C92_01510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C1C92_01515 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_01520 PF00571 CBS domain C1C92_01520 PF00005 ABC transporter C1C92_01525 PF00186 Dihydrofolate reductase C1C92_01530 PF12821 Threonine/Serine exporter, ThrE C1C92_01535 PF06738 Putative threonine/serine exporter C1C92_01545 PF00994 Probable molybdopterin binding domain C1C92_01565 PF00194 Eukaryotic-type carbonic anhydrase C1C92_01570 PF04227 Indigoidine synthase A like protein C1C92_01575 PF00294 pfkB family carbohydrate kinase C1C92_01580 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_01580 PF18267 Rubredoxin NAD+ reductase C-terminal domain C1C92_01580 PF13806 Rieske-like [2Fe-2S] domain C1C92_01580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C1C92_01580 PF04324 BFD-like [2Fe-2S] binding domain C1C92_01580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C1C92_01585 PF18267 Rubredoxin NAD+ reductase C-terminal domain C1C92_01585 PF04324 BFD-like [2Fe-2S] binding domain C1C92_01585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C1C92_01585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C1C92_01585 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_01585 PF13806 Rieske-like [2Fe-2S] domain C1C92_01590 PF00005 ABC transporter C1C92_01595 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_01600 PF00005 ABC transporter C1C92_01610 PF10414 Sirohaem synthase dimerisation region C1C92_01610 PF14824 Sirohaem biosynthesis protein central C1C92_01610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C1C92_01615 PF01568 Molydopterin dinucleotide binding domain C1C92_01615 PF00384 Molybdopterin oxidoreductase C1C92_01615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C1C92_01615 PF04324 BFD-like [2Fe-2S] binding domain C1C92_01630 PF00582 Universal stress protein family C1C92_01640 PF00171 Aldehyde dehydrogenase family C1C92_01645 PF01472 PUA domain C1C92_01645 PF00696 Amino acid kinase family C1C92_01650 PF07417 Sigma factor-binding transcriptional regulator Crl C1C92_01660 PF00156 Phosphoribosyl transferase domain C1C92_01670 PF07687 Peptidase dimerisation domain C1C92_01670 PF01546 Peptidase family M20/M25/M40 C1C92_01680 PF00005 ABC transporter C1C92_01680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_01685 PF00005 ABC transporter C1C92_01685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_01690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_01695 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_01695 PF12911 N-terminal TM domain of oligopeptide transport permease C C1C92_01700 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_01705 PF07715 TonB-dependent Receptor Plug Domain C1C92_01705 PF00593 TonB dependent receptor C1C92_01715 PF01618 MotA/TolQ/ExbB proton channel family C1C92_01720 PF01618 MotA/TolQ/ExbB proton channel family C1C92_01725 PF02472 Biopolymer transport protein ExbD/TolR C1C92_01740 PF06483 Chitinase C C1C92_01740 PF00704 Glycosyl hydrolases family 18 C1C92_01775 PF00749 tRNA synthetases class I (E and Q), catalytic domain C1C92_01780 PF00749 tRNA synthetases class I (E and Q), catalytic domain C1C92_01785 PF00672 HAMP domain C1C92_01785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_01795 PF00313 'Cold-shock' DNA-binding domain C1C92_01835 PF00929 Exonuclease C1C92_01840 PF03193 RsgA GTPase C1C92_01845 PF02666 Phosphatidylserine decarboxylase C1C92_01850 PF09905 DNA-binding protein VF530 C1C92_01870 PF03707 Bacterial signalling protein N terminal repeat C1C92_01870 PF00990 Diguanylate cyclase, GGDEF domain C1C92_01870 PF00563 EAL domain C1C92_01875 PF06877 Regulator of ribonuclease activity B C1C92_01895 PF00561 alpha/beta hydrolase fold C1C92_01900 PF00005 ABC transporter C1C92_01900 PF00664 ABC transporter transmembrane region C1C92_01905 PF06004 Bacterial protein of unknown function (DUF903) C1C92_01910 PF00581 Rhodanese-like domain C1C92_01915 PF04960 Glutaminase C1C92_01920 PF04320 Protein with unknown function (DUF469) C1C92_01925 PF02390 Putative methyltransferase C1C92_01930 PF04389 Peptidase family M28 C1C92_01930 PF01483 Proprotein convertase P-domain C1C92_01935 PF00155 Aminotransferase class I and II C1C92_01940 PF12792 CSS motif domain associated with EAL C1C92_01940 PF00563 EAL domain C1C92_01945 PF08338 Domain of unknown function (DUF1731) C1C92_01945 PF01370 NAD dependent epimerase/dehydratase family C1C92_01955 PF00005 ABC transporter C1C92_01960 PF13472 GDSL-like Lipase/Acylhydrolase family C1C92_01965 PF00072 Response regulator receiver domain C1C92_01965 PF01584 CheW-like domain C1C92_01970 PF00267 Gram-negative porin C1C92_01975 PF00478 IMP dehydrogenase / GMP reductase domain C1C92_01975 PF00571 CBS domain C1C92_01980 PF12848 ABC transporter C1C92_01980 PF00005 ABC transporter C1C92_01990 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C1C92_02000 PF02525 Flavodoxin-like fold C1C92_02030 PF13411 MerR HTH family regulatory protein C1C92_02040 PF00474 Sodium:solute symporter family C1C92_02045 PF17969 L,D-transpeptidase C-terminal domain C1C92_02045 PF03734 L,D-transpeptidase catalytic domain C1C92_02050 PF00924 Mechanosensitive ion channel C1C92_02055 PF00871 Acetokinase family C1C92_02060 PF04074 YhcH/YjgK/YiaL C1C92_02070 PF13302 Acetyltransferase (GNAT) domain C1C92_02075 PF13302 Acetyltransferase (GNAT) domain C1C92_02080 PF02868 Thermolysin metallopeptidase, alpha-helical domain C1C92_02080 PF03413 Peptidase propeptide and YPEB domain C1C92_02080 PF07504 Fungalysin/Thermolysin Propeptide Motif C1C92_02080 PF04151 Bacterial pre-peptidase C-terminal domain C1C92_02080 PF01447 Thermolysin metallopeptidase, catalytic domain C1C92_02085 PF03466 LysR substrate binding domain C1C92_02085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_02090 PF07690 Major Facilitator Superfamily C1C92_02110 PF02080 TrkA-C domain C1C92_02110 PF06826 Predicted Permease Membrane Region C1C92_02115 PF03006 Haemolysin-III related C1C92_02120 PF00282 Pyridoxal-dependent decarboxylase conserved domain C1C92_02125 PF04279 Intracellular septation protein A C1C92_02130 PF03795 YCII-related domain C1C92_02135 PF00459 Inositol monophosphatase family C1C92_02145 PF00483 Nucleotidyl transferase C1C92_02150 PF00854 POT family C1C92_02155 PF00072 Response regulator receiver domain C1C92_02185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_02195 PF01207 Dihydrouridine synthase (Dus) C1C92_02200 PF02954 Bacterial regulatory protein, Fis family C1C92_02205 PF01810 LysE type translocator C1C92_02230 PF01521 Iron-sulphur cluster biosynthesis C1C92_02240 PF00654 Voltage gated chloride channel C1C92_02245 PF00202 Aminotransferase class-III C1C92_02260 PF01569 PAP2 superfamily C1C92_02270 PF03466 LysR substrate binding domain C1C92_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_02275 PF00893 Small Multidrug Resistance protein C1C92_02280 PF00893 Small Multidrug Resistance protein C1C92_02285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C1C92_02290 PF00912 Transglycosylase C1C92_02290 PF00905 Penicillin binding protein transpeptidase domain C1C92_02290 PF14814 Bifunctional transglycosylase second domain C1C92_02295 PF00271 Helicase conserved C-terminal domain C1C92_02295 PF04408 Helicase associated domain (HA2) C1C92_02295 PF00270 DEAD/DEAH box helicase C1C92_02295 PF08482 ATP-dependent helicase C-terminal C1C92_02305 PF03749 Sugar fermentation stimulation protein RE domain C1C92_02305 PF17746 SfsA N-terminal OB domain C1C92_02310 PF01258 Prokaryotic dksA/traR C4-type zinc finger C1C92_02315 PF00749 tRNA synthetases class I (E and Q), catalytic domain C1C92_02320 PF12626 Polymerase A arginine-rich C-terminus C1C92_02320 PF01743 Poly A polymerase head domain C1C92_02320 PF12627 Probable RNA and SrmB- binding site of polymerase A C1C92_02325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C1C92_02330 PF02548 Ketopantoate hydroxymethyltransferase C1C92_02335 PF02569 Pantoate-beta-alanine ligase C1C92_02345 PF01061 ABC-2 type transporter C1C92_02350 PF00005 ABC transporter C1C92_02355 PF00156 Phosphoribosyl transferase domain C1C92_02360 PF00440 Bacterial regulatory proteins, tetR family C1C92_02365 PF02441 Flavoprotein C1C92_02370 PF08245 Mur ligase middle domain C1C92_02370 PF01225 Mur ligase family, catalytic domain C1C92_02370 PF02875 Mur ligase family, glutamate ligase domain C1C92_02375 PF00719 Inorganic pyrophosphatase C1C92_02390 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) C1C92_02405 PF00005 ABC transporter C1C92_02455 PF03600 Citrate transporter C1C92_02455 PF02080 TrkA-C domain C1C92_02460 PF00009 Elongation factor Tu GTP binding domain C1C92_02465 PF01507 Phosphoadenosine phosphosulfate reductase family C1C92_02470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C1C92_02470 PF14824 Sirohaem biosynthesis protein central C1C92_02470 PF10414 Sirohaem synthase dimerisation region C1C92_02475 PF01145 SPFH domain / Band 7 family C1C92_02475 PF16200 C-terminal region of band_7 C1C92_02480 PF01957 NfeD-like C-terminal, partner-binding C1C92_02490 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C1C92_02490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C1C92_02495 PF07690 Major Facilitator Superfamily C1C92_02500 PF01725 Ham1 family C1C92_02505 PF04055 Radical SAM superfamily C1C92_02505 PF06969 HemN C-terminal domain C1C92_02510 PF03889 Alternative ribosome-rescue factor A C1C92_02520 PF13411 MerR HTH family regulatory protein C1C92_02525 PF02142 MGS-like domain C1C92_02525 PF01808 AICARFT/IMPCHase bienzyme C1C92_02545 PF00128 Alpha amylase, catalytic domain C1C92_02560 PF03979 Sigma-70 factor, region 1.1 C1C92_02560 PF00140 Sigma-70 factor, region 1.2 C1C92_02560 PF04546 Sigma-70, non-essential region C1C92_02560 PF04545 Sigma-70, region 4 C1C92_02560 PF04542 Sigma-70 region 2 C1C92_02560 PF04539 Sigma-70 region 3 C1C92_02565 PF10410 DnaB-helicase binding domain of primase C1C92_02565 PF08278 DNA primase DnaG DnaB-binding C1C92_02565 PF08275 DNA primase catalytic core, N-terminal domain C1C92_02565 PF01807 CHC2 zinc finger C1C92_02570 PF09424 Yqey-like protein C1C92_02575 PF01165 Ribosomal protein S21 C1C92_02580 PF00814 Glycoprotease family C1C92_02585 PF04545 Sigma-70, region 4 C1C92_02585 PF04539 Sigma-70 region 3 C1C92_02585 PF04542 Sigma-70 region 2 C1C92_02585 PF00140 Sigma-70 factor, region 1.2 C1C92_02590 PF01476 LysM domain C1C92_02590 PF01551 Peptidase family M23 C1C92_02595 PF09335 SNARE associated Golgi protein C1C92_02605 PF01975 Survival protein SurE C1C92_02610 PF01142 tRNA pseudouridine synthase D (TruD) C1C92_02615 PF02542 YgbB family C1C92_02620 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C1C92_02625 PF04977 Septum formation initiator C1C92_02630 PF03952 Enolase, N-terminal domain C1C92_02630 PF00113 Enolase, C-terminal TIM barrel domain C1C92_02635 PF00117 Glutamine amidotransferase class-I C1C92_02635 PF06418 CTP synthase N-terminus C1C92_02640 PF03819 MazG nucleotide pyrophosphohydrolase domain C1C92_02645 PF02824 TGS domain C1C92_02645 PF04607 Region found in RelA / SpoT proteins C1C92_02645 PF13291 ACT domain C1C92_02650 PF01938 TRAM domain C1C92_02650 PF05958 tRNA (Uracil-5-)-methyltransferase C1C92_02655 PF00072 Response regulator receiver domain C1C92_02655 PF00512 His Kinase A (phospho-acceptor) domain C1C92_02655 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C1C92_02655 PF01627 Hpt domain C1C92_02655 PF00672 HAMP domain C1C92_02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_02660 PF07308 Protein of unknown function (DUF1456) C1C92_02665 PF01510 N-acetylmuramoyl-L-alanine amidase C1C92_02670 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C1C92_02675 PF11967 Recombination protein O N terminal C1C92_02675 PF02565 Recombination protein O C terminal C1C92_02680 PF01926 50S ribosome-binding GTPase C1C92_02680 PF07650 KH domain C1C92_02685 PF14622 Ribonuclease-III-like C1C92_02685 PF00035 Double-stranded RNA binding motif C1C92_02690 PF10502 Signal peptidase, peptidase S26 C1C92_02695 PF00679 Elongation factor G C-terminus C1C92_02695 PF00009 Elongation factor Tu GTP binding domain C1C92_02695 PF06421 GTP-binding protein LepA C-terminus C1C92_02695 PF03144 Elongation factor Tu domain 2 C1C92_02705 PF03888 MucB/RseB N-terminal domain C1C92_02705 PF17188 MucB/RseB C-terminal domain C1C92_02710 PF03872 Anti sigma-E protein RseA, N-terminal domain C1C92_02710 PF03873 Anti sigma-E protein RseA, C-terminal domain C1C92_02715 PF04542 Sigma-70 region 2 C1C92_02715 PF08281 Sigma-70, region 4 C1C92_02720 PF02910 Fumarate reductase flavoprotein C-term C1C92_02720 PF00890 FAD binding domain C1C92_02730 PF03937 Flavinator of succinate dehydrogenase C1C92_02735 PF01571 Aminomethyltransferase folate-binding domain C1C92_02740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_02740 PF03466 LysR substrate binding domain C1C92_02755 PF03091 CutA1 divalent ion tolerance protein C1C92_02760 PF02683 Cytochrome C biogenesis protein transmembrane region C1C92_02760 PF11412 Disulphide bond corrector protein DsbC C1C92_02775 PF01266 FAD dependent oxidoreductase C1C92_02780 PF01116 Fructose-bisphosphate aldolase class-II C1C92_02785 PF00162 Phosphoglycerate kinase C1C92_02790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C1C92_02790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C1C92_02795 PF00480 ROK family C1C92_02800 PF01208 Uroporphyrinogen decarboxylase (URO-D) C1C92_02805 PF09297 NADH pyrophosphatase zinc ribbon domain C1C92_02805 PF00293 NUDIX domain C1C92_02810 PF08239 Bacterial SH3 domain C1C92_02815 PF00520 Ion transport protein C1C92_02815 PF00027 Cyclic nucleotide-binding domain C1C92_02820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_02820 PF00672 HAMP domain C1C92_02820 PF02743 Cache domain C1C92_02830 PF08335 GlnD PII-uridylyltransferase C1C92_02830 PF03710 Glutamate-ammonia ligase adenylyltransferase C1C92_02850 PF00326 Prolyl oligopeptidase family C1C92_02850 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain C1C92_02855 PF00291 Pyridoxal-phosphate dependent enzyme C1C92_02860 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_02865 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_02870 PF00005 ABC transporter C1C92_02875 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_02880 PF13194 Domain of unknown function (DUF4010) C1C92_02885 PF12464 Maltose acetyltransferase C1C92_02885 PF14602 Hexapeptide repeat of succinyl-transferase C1C92_02925 PF03466 LysR substrate binding domain C1C92_02925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_02930 PF14698 Argininosuccinate lyase C-terminal C1C92_02930 PF00206 Lyase C1C92_02935 PF00764 Arginosuccinate synthase C1C92_02940 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C1C92_02940 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C1C92_02945 PF00696 Amino acid kinase family C1C92_02950 PF02774 Semialdehyde dehydrogenase, dimerisation domain C1C92_02950 PF01118 Semialdehyde dehydrogenase, NAD binding domain C1C92_02955 PF07687 Peptidase dimerisation domain C1C92_02955 PF01546 Peptidase family M20/M25/M40 C1C92_02960 PF00311 Phosphoenolpyruvate carboxylase C1C92_02965 PF08448 PAS fold C1C92_02965 PF08447 PAS fold C1C92_02965 PF05231 MASE1 C1C92_02965 PF13426 PAS domain C1C92_02965 PF00563 EAL domain C1C92_02965 PF00990 Diguanylate cyclase, GGDEF domain C1C92_02970 PF04073 Aminoacyl-tRNA editing domain C1C92_02990 PF00392 Bacterial regulatory proteins, gntR family C1C92_02990 PF00155 Aminotransferase class I and II C1C92_03005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_03005 PF03466 LysR substrate binding domain C1C92_03010 PF03788 LrgA family C1C92_03015 PF04172 LrgB-like family C1C92_03020 PF00696 Amino acid kinase family C1C92_03020 PF03447 Homoserine dehydrogenase, NAD binding domain C1C92_03020 PF00742 Homoserine dehydrogenase C1C92_03025 PF01053 Cys/Met metabolism PLP-dependent enzyme C1C92_03030 PF01340 Met Apo-repressor, MetJ C1C92_03040 PF01588 Putative tRNA binding domain C1C92_03050 PF00459 Inositol monophosphatase family C1C92_03055 PF00293 NUDIX domain C1C92_03060 PF13419 Haloacid dehalogenase-like hydrolase C1C92_03065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C1C92_03070 PF03466 LysR substrate binding domain C1C92_03070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_03075 PF00579 tRNA synthetases class I (W and Y) C1C92_03075 PF01479 S4 domain C1C92_03080 PF00196 Bacterial regulatory proteins, luxR family C1C92_03085 PF01203 Type II secretion system (T2SS), protein N C1C92_03090 PF04612 Type II secretion system (T2SS), protein M C1C92_03095 PF12693 GspL periplasmic domain C1C92_03095 PF05134 Type II secretion system (T2SS), protein L C1C92_03100 PF03934 Type II secretion system (T2SS), protein K C1C92_03105 PF07963 Prokaryotic N-terminal methylation motif C1C92_03105 PF11612 Type II secretion system (T2SS), protein J C1C92_03110 PF07963 Prokaryotic N-terminal methylation motif C1C92_03110 PF02501 Type II secretion system (T2SS), protein I C1C92_03115 PF07963 Prokaryotic N-terminal methylation motif C1C92_03115 PF12019 Type II transport protein GspH C1C92_03120 PF08334 Type II secretion system (T2SS), protein G C1C92_03120 PF07963 Prokaryotic N-terminal methylation motif C1C92_03125 PF00482 Type II secretion system (T2SS), protein F C1C92_03130 PF00437 Type II/IV secretion system protein C1C92_03135 PF00263 Bacterial type II and III secretion system protein C1C92_03135 PF03958 Bacterial type II/III secretion system short domain C1C92_03140 PF11356 Type II secretion system protein C C1C92_03145 PF01479 S4 domain C1C92_03150 PF01430 Hsp33 protein C1C92_03155 PF01293 Phosphoenolpyruvate carboxykinase C1C92_03160 PF00392 Bacterial regulatory proteins, gntR family C1C92_03165 PF01321 Creatinase/Prolidase N-terminal domain C1C92_03165 PF00557 Metallopeptidase family M24 C1C92_03170 PF00583 Acetyltransferase (GNAT) family C1C92_03175 PF05433 Glycine zipper 2TM domain C1C92_03180 PF01928 CYTH domain C1C92_03185 PF01865 Protein of unknown function DUF47 C1C92_03190 PF01384 Phosphate transporter family C1C92_03195 PF12627 Probable RNA and SrmB- binding site of polymerase A C1C92_03195 PF01743 Poly A polymerase head domain C1C92_03195 PF01966 HD domain C1C92_03200 PF01471 Putative peptidoglycan binding domain C1C92_03200 PF13401 AAA domain C1C92_03205 PF16537 Type II secretion system protein B C1C92_03210 PF14815 NUDIX domain C1C92_03210 PF00633 Helix-hairpin-helix motif C1C92_03210 PF00730 HhH-GPD superfamily base excision DNA repair protein C1C92_03210 PF10576 Iron-sulfur binding domain of endonuclease III C1C92_03215 PF04362 Bacterial Fe(2+) trafficking C1C92_03220 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain C1C92_03220 PF01464 Transglycosylase SLT domain C1C92_03230 PF00657 GDSL-like Lipase/Acylhydrolase C1C92_03235 PF01389 OmpA-like transmembrane domain C1C92_03235 PF00691 OmpA family C1C92_03240 PF03886 ABC-type transport auxiliary lipoprotein component C1C92_03245 PF02470 MlaD protein C1C92_03250 PF04403 Paraquat-inducible protein A C1C92_03255 PF17209 Hfq protein C1C92_03260 PF13419 Haloacid dehalogenase-like hydrolase C1C92_03265 PF00360 Phytochrome region C1C92_03265 PF00990 Diguanylate cyclase, GGDEF domain C1C92_03265 PF01590 GAF domain C1C92_03265 PF00563 EAL domain C1C92_03270 PF00701 Dihydrodipicolinate synthetase family C1C92_03275 PF08468 Methyltransferase small domain N-terminal C1C92_03275 PF05175 Methyltransferase small domain C1C92_03280 PF00483 Nucleotidyl transferase C1C92_03285 PF08323 Starch synthase catalytic domain C1C92_03285 PF00534 Glycosyl transferases group 1 C1C92_03325 PF03553 Na+/H+ antiporter family C1C92_03330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_03330 PF03466 LysR substrate binding domain C1C92_03335 PF13416 Bacterial extracellular solute-binding protein C1C92_03340 PF00005 ABC transporter C1C92_03340 PF08402 TOBE domain C1C92_03345 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_03350 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_03355 PF00171 Aldehyde dehydrogenase family C1C92_03360 PF01040 UbiA prenyltransferase family C1C92_03385 PF00510 Cytochrome c oxidase subunit III C1C92_03390 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 C1C92_03395 PF00115 Cytochrome C and Quinol oxidase polypeptide I C1C92_03400 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C1C92_03400 PF02790 Cytochrome C oxidase subunit II, transmembrane domain C1C92_03405 PF17176 tRNA-binding domain C1C92_03405 PF08351 Domain of unknown function (DUF1726) C1C92_03405 PF13718 GNAT acetyltransferase 2 C1C92_03405 PF05127 Helicase C1C92_03420 PF00210 Ferritin-like domain C1C92_03425 PF02142 MGS-like domain C1C92_03440 PF17763 Glutaminase/Asparaginase C-terminal domain C1C92_03440 PF00710 Asparaginase, N-terminal C1C92_03455 PF00356 Bacterial regulatory proteins, lacI family C1C92_03460 PF02378 Phosphotransferase system, EIIC C1C92_03460 PF00367 phosphotransferase system, EIIB C1C92_03465 PF00128 Alpha amylase, catalytic domain C1C92_03465 PF11941 Domain of unknown function (DUF3459) C1C92_03470 PF14602 Hexapeptide repeat of succinyl-transferase C1C92_03470 PF12464 Maltose acetyltransferase C1C92_03475 PF01037 Lrp/AsnC ligand binding domain C1C92_03505 PF04222 Protein of unknown function (DUF416) C1C92_03510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C1C92_03515 PF01476 LysM domain C1C92_03515 PF01551 Peptidase family M23 C1C92_03515 PF08525 Opacity-associated protein A N-terminal motif C1C92_03535 PF01297 Zinc-uptake complex component A periplasmic C1C92_03540 PF00005 ABC transporter C1C92_03545 PF00950 ABC 3 transport family C1C92_03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_03550 PF03466 LysR substrate binding domain C1C92_03560 PF03167 Uracil DNA glycosylase superfamily C1C92_03565 PF00892 EamA-like transporter family C1C92_03570 PF01541 GIY-YIG catalytic domain C1C92_03585 PF04012 PspA/IM30 family C1C92_03590 PF01553 Acyltransferase C1C92_03610 PF00578 AhpC/TSA family C1C92_03620 PF00226 DnaJ domain C1C92_03620 PF00684 DnaJ central domain C1C92_03620 PF01556 DnaJ C terminal domain C1C92_03660 PF00521 DNA gyrase/topoisomerase IV, subunit A C1C92_03660 PF03989 DNA gyrase C-terminal domain, beta-propeller C1C92_03665 PF00986 DNA gyrase B subunit, carboxyl terminus C1C92_03665 PF01751 Toprim domain C1C92_03665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_03665 PF00204 DNA gyrase B C1C92_03670 PF04632 Fusaric acid resistance protein family C1C92_03675 PF00529 HlyD membrane-fusion protein of T1SS C1C92_03675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_03680 PF07869 Protein of unknown function (DUF1656) C1C92_03690 PF00293 NUDIX domain C1C92_03695 PF05728 Uncharacterised protein family (UPF0227) C1C92_03700 PF00149 Calcineurin-like phosphoesterase C1C92_03705 PF06853 Protein of unknown function (DUF1249) C1C92_03710 PF00293 NUDIX domain C1C92_03715 PF02321 Outer membrane efflux protein C1C92_03720 PF01467 Cytidylyltransferase-like C1C92_03720 PF00294 pfkB family carbohydrate kinase C1C92_03725 PF03279 Bacterial lipid A biosynthesis acyltransferase C1C92_03730 PF02872 5'-nucleotidase, C-terminal domain C1C92_03730 PF00149 Calcineurin-like phosphoesterase C1C92_03735 PF01810 LysE type translocator C1C92_03740 PF03472 Autoinducer binding domain C1C92_03740 PF00196 Bacterial regulatory proteins, luxR family C1C92_03750 PF03466 LysR substrate binding domain C1C92_03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_03755 PF00773 RNB domain C1C92_03755 PF17876 Cold shock domain C1C92_03755 PF08206 Ribonuclease B OB domain C1C92_03765 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C1C92_03765 PF02378 Phosphotransferase system, EIIC C1C92_03765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C1C92_03770 PF08125 Mannitol dehydrogenase C-terminal domain C1C92_03770 PF01232 Mannitol dehydrogenase Rossmann domain C1C92_03775 PF05068 Mannitol repressor C1C92_03780 PF02080 TrkA-C domain C1C92_03780 PF00999 Sodium/hydrogen exchanger family C1C92_03780 PF03471 Transporter associated domain C1C92_03800 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 C1C92_03815 PF07670 Nucleoside recognition C1C92_03815 PF07662 Na+ dependent nucleoside transporter C-terminus C1C92_03815 PF01773 Na+ dependent nucleoside transporter N-terminus C1C92_03820 PF03880 DbpA RNA binding domain C1C92_03820 PF00270 DEAD/DEAH box helicase C1C92_03820 PF00271 Helicase conserved C-terminal domain C1C92_03840 PF01040 UbiA prenyltransferase family C1C92_03845 PF00425 chorismate binding enzyme C1C92_03850 PF16582 Middle domain of thiamine pyrophosphate C1C92_03850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C1C92_03850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C1C92_03855 PF12697 Alpha/beta hydrolase family C1C92_03860 PF00378 Enoyl-CoA hydratase/isomerase C1C92_03865 PF13378 Enolase C-terminal domain-like C1C92_03870 PF00501 AMP-binding enzyme C1C92_03875 PF01752 Collagenase C1C92_03875 PF08453 Peptidase family M9 N-terminal C1C92_03880 PF02698 DUF218 domain C1C92_03885 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C1C92_03885 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C1C92_03895 PF00561 alpha/beta hydrolase fold C1C92_03915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_03915 PF12793 Sugar transport-related sRNA regulator N-term C1C92_03925 PF01053 Cys/Met metabolism PLP-dependent enzyme C1C92_03935 PF00465 Iron-containing alcohol dehydrogenase C1C92_03950 PF00106 short chain dehydrogenase C1C92_03970 PF02308 MgtC family C1C92_03975 PF16657 Maltogenic Amylase, C-terminal domain C1C92_03975 PF02903 Alpha amylase, N-terminal ig-like domain C1C92_03975 PF00128 Alpha amylase, catalytic domain C1C92_03985 PF00884 Sulfatase C1C92_03990 PF01037 Lrp/AsnC ligand binding domain C1C92_04000 PF04204 Homoserine O-succinyltransferase C1C92_04010 PF00994 Probable molybdopterin binding domain C1C92_04010 PF02464 Competence-damaged protein C1C92_04015 PF04307 LexA-binding, inner membrane-associated putative hydrolase C1C92_04035 PF07722 Peptidase C26 C1C92_04045 PF13419 Haloacid dehalogenase-like hydrolase C1C92_04050 PF02899 Phage integrase, N-terminal SAM-like domain C1C92_04050 PF00589 Phage integrase family C1C92_04060 PF01678 Diaminopimelate epimerase C1C92_04065 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C1C92_04065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C1C92_04075 PF01491 Frataxin-like domain C1C92_04080 PF02230 Phospholipase/Carboxylesterase C1C92_04085 PF01295 Adenylate cyclase, class-I C1C92_04085 PF12633 Adenylate cyclase NT domain C1C92_04090 PF03900 Porphobilinogen deaminase, C-terminal domain C1C92_04090 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C1C92_04095 PF02602 Uroporphyrinogen-III synthase HemD C1C92_04100 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase C1C92_04105 PF07719 Tetratricopeptide repeat C1C92_04105 PF07219 HemY protein N-terminus C1C92_04110 PF01523 Putative modulator of DNA gyrase C1C92_04115 PF04751 Protein of unknown function (DUF615) C1C92_04125 PF04363 Protein of unknown function (DUF496) C1C92_04155 PF01381 Helix-turn-helix C1C92_04155 PF07883 Cupin domain C1C92_04160 PF03594 Benzoate membrane transport protein C1C92_04170 PF02219 Methylenetetrahydrofolate reductase C1C92_04185 PF00672 HAMP domain C1C92_04185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_04190 PF03922 OmpW family C1C92_04195 PF17760 UvrA interaction domain C1C92_04195 PF17755 UvrA DNA-binding domain C1C92_04195 PF00005 ABC transporter C1C92_04200 PF00196 Bacterial regulatory proteins, luxR family C1C92_04205 PF00436 Single-strand binding protein family C1C92_04245 PF14490 Helix-hairpin-helix containing domain C1C92_04245 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain C1C92_04245 PF13538 UvrD-like helicase C-terminal domain C1C92_04260 PF07690 Major Facilitator Superfamily C1C92_04265 PF00440 Bacterial regulatory proteins, tetR family C1C92_04265 PF02909 Tetracyclin repressor-like, C-terminal domain C1C92_04280 PF01381 Helix-turn-helix C1C92_04305 PF00313 'Cold-shock' DNA-binding domain C1C92_04310 PF00512 His Kinase A (phospho-acceptor) domain C1C92_04310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_04310 PF00672 HAMP domain C1C92_04315 PF00486 Transcriptional regulatory protein, C terminal C1C92_04315 PF00072 Response regulator receiver domain C1C92_04325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_04325 PF00672 HAMP domain C1C92_04335 PF08448 PAS fold C1C92_04335 PF00990 Diguanylate cyclase, GGDEF domain C1C92_04340 PF00543 Nitrogen regulatory protein P-II C1C92_04345 PF00909 Ammonium Transporter Family C1C92_04360 PF13538 UvrD-like helicase C-terminal domain C1C92_04365 PF00580 UvrD/REP helicase N-terminal domain C1C92_04365 PF13361 UvrD-like helicase C-terminal domain C1C92_04365 PF12705 PD-(D/E)XK nuclease superfamily C1C92_04370 PF17946 RecC C-terminal domain C1C92_04375 PF07681 DoxX C1C92_04380 PF02678 Pirin C1C92_04380 PF17954 Quercetinase C-terminal cupin domain C1C92_04390 PF03466 LysR substrate binding domain C1C92_04390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_04400 PF00392 Bacterial regulatory proteins, gntR family C1C92_04400 PF07702 UTRA domain C1C92_04415 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_04425 PF00005 ABC transporter C1C92_04425 PF08402 TOBE domain C1C92_04435 PF00990 Diguanylate cyclase, GGDEF domain C1C92_04435 PF00072 Response regulator receiver domain C1C92_04455 PF00583 Acetyltransferase (GNAT) family C1C92_04460 PF06628 Catalase-related immune-responsive C1C92_04460 PF00199 Catalase C1C92_04480 PF00293 NUDIX domain C1C92_04485 PF01594 AI-2E family transporter C1C92_04490 PF00106 short chain dehydrogenase C1C92_04495 PF04371 Porphyromonas-type peptidyl-arginine deiminase C1C92_04500 PF13416 Bacterial extracellular solute-binding protein C1C92_04505 PF00795 Carbon-nitrogen hydrolase C1C92_04510 PF04371 Porphyromonas-type peptidyl-arginine deiminase C1C92_04515 PF03466 LysR substrate binding domain C1C92_04515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_04520 PF00989 PAS fold C1C92_04520 PF00158 Sigma-54 interaction domain C1C92_04520 PF02954 Bacterial regulatory protein, Fis family C1C92_04525 PF03610 PTS system fructose IIA component C1C92_04525 PF00391 PEP-utilising enzyme, mobile domain C1C92_04525 PF05524 PEP-utilising enzyme, N-terminal C1C92_04525 PF00381 PTS HPr component phosphorylation site C1C92_04530 PF02734 DAK2 domain C1C92_04535 PF02733 Dak1 domain C1C92_04540 PF00860 Permease family C1C92_04545 PF03079 ARD/ARD' family C1C92_04580 PF03144 Elongation factor Tu domain 2 C1C92_04580 PF00009 Elongation factor Tu GTP binding domain C1C92_04580 PF03143 Elongation factor Tu C-terminal domain C1C92_04585 PF03144 Elongation factor Tu domain 2 C1C92_04585 PF00679 Elongation factor G C-terminus C1C92_04585 PF00009 Elongation factor Tu GTP binding domain C1C92_04585 PF14492 Elongation Factor G, domain II C1C92_04585 PF03764 Elongation factor G, domain IV C1C92_04590 PF00177 Ribosomal protein S7p/S5e C1C92_04595 PF00164 Ribosomal protein S12/S23 C1C92_04600 PF04077 DsrH like protein C1C92_04605 PF02635 DsrE/DsrF-like family C1C92_04610 PF02635 DsrE/DsrF-like family C1C92_04615 PF01042 Endoribonuclease L-PSP C1C92_04620 PF08348 YheO-like PAS domain C1C92_04620 PF13309 HTH domain C1C92_04625 PF04997 RNA polymerase Rpb1, domain 1 C1C92_04625 PF00623 RNA polymerase Rpb1, domain 2 C1C92_04625 PF04983 RNA polymerase Rpb1, domain 3 C1C92_04625 PF05000 RNA polymerase Rpb1, domain 4 C1C92_04625 PF04998 RNA polymerase Rpb1, domain 5 C1C92_04630 PF00562 RNA polymerase Rpb2, domain 6 C1C92_04630 PF04561 RNA polymerase Rpb2, domain 2 C1C92_04630 PF04563 RNA polymerase beta subunit C1C92_04630 PF10385 RNA polymerase beta subunit external 1 domain C1C92_04630 PF04565 RNA polymerase Rpb2, domain 3 C1C92_04630 PF04560 RNA polymerase Rpb2, domain 7 C1C92_04635 PF16320 Ribosomal protein L7/L12 dimerisation domain C1C92_04635 PF00542 Ribosomal protein L7/L12 C-terminal domain C1C92_04640 PF00466 Ribosomal protein L10 C1C92_04645 PF00687 Ribosomal protein L1p/L10e family C1C92_04650 PF03946 Ribosomal protein L11, N-terminal domain C1C92_04650 PF00298 Ribosomal protein L11, RNA binding domain C1C92_04655 PF00467 KOW motif C1C92_04655 PF02357 Transcription termination factor nusG C1C92_04660 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C1C92_04670 PF00009 Elongation factor Tu GTP binding domain C1C92_04670 PF03144 Elongation factor Tu domain 2 C1C92_04670 PF03143 Elongation factor Tu C-terminal domain C1C92_04685 PF00485 Phosphoribulokinase / Uridine kinase family C1C92_04690 PF02237 Biotin protein ligase C terminal domain C1C92_04690 PF08279 HTH domain C1C92_04690 PF03099 Biotin/lipoate A/B protein ligase family C1C92_04695 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C1C92_04695 PF01565 FAD binding domain C1C92_04700 PF02080 TrkA-C domain C1C92_04700 PF02254 TrkA-N domain C1C92_04705 PF02386 Cation transport protein C1C92_04710 PF01131 DNA topoisomerase C1C92_04710 PF01751 Toprim domain C1C92_04715 PF03264 NapC/NirT cytochrome c family, N-terminal region C1C92_04730 PF08918 PhoQ Sensor C1C92_04730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_04735 PF00072 Response regulator receiver domain C1C92_04735 PF00486 Transcriptional regulatory protein, C terminal C1C92_04750 PF01794 Ferric reductase like transmembrane component C1C92_04765 PF06496 Protein of unknown function (DUF1097) C1C92_04770 PF00072 Response regulator receiver domain C1C92_04770 PF00158 Sigma-54 interaction domain C1C92_04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_04780 PF00512 His Kinase A (phospho-acceptor) domain C1C92_04800 PF00571 CBS domain C1C92_04800 PF00478 IMP dehydrogenase / GMP reductase domain C1C92_04810 PF01037 Lrp/AsnC ligand binding domain C1C92_04815 PF03590 Aspartate-ammonia ligase C1C92_04830 PF03466 LysR substrate binding domain C1C92_04830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_04840 PF02861 Clp amino terminal domain, pathogenicity island component C1C92_04840 PF17871 AAA lid domain C1C92_04840 PF07724 AAA domain (Cdc48 subfamily) C1C92_04840 PF00004 ATPase family associated with various cellular activities (AAA) C1C92_04840 PF10431 C-terminal, D2-small domain, of ClpB protein C1C92_04850 PF00849 RNA pseudouridylate synthase C1C92_04850 PF01479 S4 domain C1C92_04855 PF13525 Outer membrane lipoprotein C1C92_04860 PF03313 Serine dehydratase alpha chain C1C92_04865 PF08348 YheO-like PAS domain C1C92_04865 PF13309 HTH domain C1C92_04870 PF02233 NAD(P) transhydrogenase beta subunit C1C92_04875 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C1C92_04875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C1C92_04875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C1C92_04880 PF00465 Iron-containing alcohol dehydrogenase C1C92_04885 PF12833 Helix-turn-helix domain C1C92_04885 PF06719 AraC-type transcriptional regulator N-terminus C1C92_04900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_04900 PF00672 HAMP domain C1C92_04900 PF02743 Cache domain C1C92_04910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_04910 PF03466 LysR substrate binding domain C1C92_04930 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C1C92_04930 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C1C92_04935 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain C1C92_04935 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain C1C92_04940 PF02863 Arginine repressor, C-terminal domain C1C92_04940 PF01316 Arginine repressor, DNA binding domain C1C92_04950 PF03606 C4-dicarboxylate anaerobic carrier C1C92_04955 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C1C92_04955 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C1C92_04960 PF00696 Amino acid kinase family C1C92_04975 PF00672 HAMP domain C1C92_04975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_04975 PF02743 Cache domain C1C92_04980 PF02653 Branched-chain amino acid transport system / permease component C1C92_04985 PF00005 ABC transporter C1C92_04990 PF13407 Periplasmic binding protein domain C1C92_04995 PF02837 Glycosyl hydrolases family 2, sugar binding domain C1C92_04995 PF02929 Beta galactosidase small chain C1C92_04995 PF16353 Domain of unknown function(DUF4981) C1C92_04995 PF00703 Glycosyl hydrolases family 2 C1C92_04995 PF02836 Glycosyl hydrolases family 2, TIM barrel domain C1C92_05000 PF00356 Bacterial regulatory proteins, lacI family C1C92_05005 PF16363 GDP-mannose 4,6 dehydratase C1C92_05010 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain C1C92_05010 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain C1C92_05015 PF10509 Galactokinase galactose-binding signature C1C92_05015 PF08544 GHMP kinases C terminal C1C92_05015 PF00288 GHMP kinases N terminal domain C1C92_05020 PF01263 Aldose 1-epimerase C1C92_05025 PF00248 Aldo/keto reductase family C1C92_05030 PF02673 Bacitracin resistance protein BacA C1C92_05035 PF12973 ChrR Cupin-like domain C1C92_05040 PF04542 Sigma-70 region 2 C1C92_05040 PF04545 Sigma-70, region 4 C1C92_05050 PF00750 tRNA synthetases class I (R) C1C92_05050 PF05746 DALR anticodon binding domain C1C92_05050 PF03485 Arginyl tRNA synthetase N terminal domain C1C92_05060 PF00227 Proteasome subunit C1C92_05065 PF07724 AAA domain (Cdc48 subfamily) C1C92_05065 PF10431 C-terminal, D2-small domain, of ClpB protein C1C92_05065 PF00004 ATPase family associated with various cellular activities (AAA) C1C92_05070 PF07690 Major Facilitator Superfamily C1C92_05085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_05090 PF00005 ABC transporter C1C92_05105 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C1C92_05105 PF18267 Rubredoxin NAD+ reductase C-terminal domain C1C92_05105 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_05105 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C1C92_05105 PF04324 BFD-like [2Fe-2S] binding domain C1C92_05110 PF13806 Rieske-like [2Fe-2S] domain C1C92_05115 PF01226 Formate/nitrite transporter C1C92_05120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C1C92_05120 PF10414 Sirohaem synthase dimerisation region C1C92_05120 PF14824 Sirohaem biosynthesis protein central C1C92_05125 PF00571 CBS domain C1C92_05125 PF03448 MgtE intracellular N domain C1C92_05125 PF01769 Divalent cation transporter C1C92_05130 PF03737 Aldolase/RraA C1C92_05135 PF02592 Putative vitamin uptake transporter C1C92_05145 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C1C92_05150 PF00034 Cytochrome c C1C92_05155 PF00271 Helicase conserved C-terminal domain C1C92_05155 PF00570 HRDC domain C1C92_05155 PF16124 RecQ zinc-binding C1C92_05155 PF00270 DEAD/DEAH box helicase C1C92_05155 PF09382 RQC domain C1C92_05160 PF00270 DEAD/DEAH box helicase C1C92_05160 PF09382 RQC domain C1C92_05160 PF16124 RecQ zinc-binding C1C92_05160 PF00570 HRDC domain C1C92_05160 PF00271 Helicase conserved C-terminal domain C1C92_05165 PF03061 Thioesterase superfamily C1C92_05180 PF03473 MOSC domain C1C92_05180 PF03475 3-alpha domain C1C92_05185 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_05190 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_05195 PF00005 ABC transporter C1C92_05195 PF08402 TOBE domain C1C92_05200 PF13416 Bacterial extracellular solute-binding protein C1C92_05205 PF13416 Bacterial extracellular solute-binding protein C1C92_05215 PF00120 Glutamine synthetase, catalytic domain C1C92_05220 PF01258 Prokaryotic dksA/traR C4-type zinc finger C1C92_05235 PF05981 CreA protein C1C92_05240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C1C92_05240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C1C92_05245 PF00012 Hsp70 protein C1C92_05260 PF02903 Alpha amylase, N-terminal ig-like domain C1C92_05260 PF00128 Alpha amylase, catalytic domain C1C92_05270 PF16221 winged helix-turn-helix C1C92_05270 PF16254 Domain of unknown function (DUF4910) C1C92_05270 PF09940 Domain of unknown function (DUF2172) C1C92_05305 PF05958 tRNA (Uracil-5-)-methyltransferase C1C92_05310 PF00072 Response regulator receiver domain C1C92_05310 PF00486 Transcriptional regulatory protein, C terminal C1C92_05315 PF00672 HAMP domain C1C92_05315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_05315 PF00512 His Kinase A (phospho-acceptor) domain C1C92_05325 PF00390 Malic enzyme, N-terminal domain C1C92_05325 PF03949 Malic enzyme, NAD binding domain C1C92_05330 PF11066 Protein of unknown function (DUF2867) C1C92_05330 PF13460 NAD(P)H-binding C1C92_05335 PF01197 Ribosomal protein L31 C1C92_05340 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C1C92_05340 PF18074 Primosomal protein N C-terminal domain C1C92_05340 PF17764 3′ DNA-binding domain (3′BD) C1C92_05340 PF00271 Helicase conserved C-terminal domain C1C92_05340 PF00270 DEAD/DEAH box helicase C1C92_05345 PF00440 Bacterial regulatory proteins, tetR family C1C92_05355 PF00691 OmpA family C1C92_05355 PF01389 OmpA-like transmembrane domain C1C92_05360 PF00585 C-terminal regulatory domain of Threonine dehydratase C1C92_05360 PF00291 Pyridoxal-phosphate dependent enzyme C1C92_05365 PF00920 Dehydratase family C1C92_05370 PF01063 Amino-transferase class IV C1C92_05380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C1C92_05380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C1C92_05380 PF00205 Thiamine pyrophosphate enzyme, central domain C1C92_05390 PF13335 Magnesium chelatase, subunit ChlI C-terminal C1C92_05390 PF01078 Magnesium chelatase, subunit ChlI C1C92_05395 PF01553 Acyltransferase C1C92_05400 PF01553 Acyltransferase C1C92_05405 PF04463 Protein of unknown function (DUF523) C1C92_05415 PF00857 Isochorismatase family C1C92_05420 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C1C92_05420 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C1C92_05425 PF01323 DSBA-like thioredoxin domain C1C92_05430 PF01636 Phosphotransferase enzyme family C1C92_05435 PF13746 4Fe-4S dicluster domain C1C92_05435 PF12801 4Fe-4S binding domain C1C92_05435 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase C1C92_05440 PF06288 Protein of unknown function (DUF1040) C1C92_05445 PF00563 EAL domain C1C92_05445 PF00990 Diguanylate cyclase, GGDEF domain C1C92_05445 PF00360 Phytochrome region C1C92_05445 PF01590 GAF domain C1C92_05450 PF09278 MerR, DNA binding C1C92_05450 PF00376 MerR family regulatory protein C1C92_05455 PF00403 Heavy-metal-associated domain C1C92_05460 PF00156 Phosphoribosyl transferase domain C1C92_05465 PF03725 3' exoribonuclease family, domain 2 C1C92_05465 PF01138 3' exoribonuclease family, domain 1 C1C92_05470 PF08340 Domain of unknown function (DUF1732) C1C92_05470 PF03755 YicC-like family, N-terminal region C1C92_05480 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C1C92_05485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C1C92_05490 PF00535 Glycosyl transferase family 2 C1C92_05495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C1C92_05500 PF01467 Cytidylyltransferase-like C1C92_05505 PF04393 Protein of unknown function (DUF535) C1C92_05510 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C1C92_05510 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C1C92_05510 PF06827 Zinc finger found in FPG and IleRS C1C92_05520 PF00471 Ribosomal protein L33 C1C92_05525 PF00830 Ribosomal L28 family C1C92_05530 PF04002 RadC-like JAB domain C1C92_05535 PF02441 Flavoprotein C1C92_05535 PF04127 DNA / pantothenate metabolism flavoprotein C1C92_05540 PF00692 dUTPase C1C92_05545 PF00440 Bacterial regulatory proteins, tetR family C1C92_05565 PF00924 Mechanosensitive ion channel C1C92_05565 PF05552 Conserved TM helix C1C92_05575 PF00342 Phosphoglucose isomerase C1C92_05580 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C1C92_05580 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C1C92_05585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_05585 PF03466 LysR substrate binding domain C1C92_05595 PF00583 Acetyltransferase (GNAT) family C1C92_05595 PF13607 Succinyl-CoA ligase like flavodoxin domain C1C92_05595 PF13380 CoA binding domain C1C92_05625 PF12724 Flavodoxin domain C1C92_05630 PF02386 Cation transport protein C1C92_05635 PF01205 Uncharacterized protein family UPF0029 C1C92_05635 PF09186 Domain of unknown function (DUF1949) C1C92_05640 PF00557 Metallopeptidase family M24 C1C92_05645 PF00501 AMP-binding enzyme C1C92_05645 PF13193 AMP-binding enzyme C-terminal domain C1C92_05650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C1C92_05650 PF00378 Enoyl-CoA hydratase/isomerase C1C92_05650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C1C92_05655 PF00108 Thiolase, N-terminal domain C1C92_05655 PF02803 Thiolase, C-terminal domain C1C92_05660 PF00072 Response regulator receiver domain C1C92_05660 PF00486 Transcriptional regulatory protein, C terminal C1C92_05665 PF00672 HAMP domain C1C92_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_05665 PF00512 His Kinase A (phospho-acceptor) domain C1C92_05670 PF01547 Bacterial extracellular solute-binding protein C1C92_05685 PF01206 Sulfurtransferase TusA C1C92_05690 PF01042 Endoribonuclease L-PSP C1C92_05695 PF13488 Glycine zipper C1C92_05695 PF00691 OmpA family C1C92_05705 PF00857 Isochorismatase family C1C92_05710 PF03352 Methyladenine glycosylase C1C92_05715 PF02091 Glycyl-tRNA synthetase alpha subunit C1C92_05720 PF05746 DALR anticodon binding domain C1C92_05720 PF02092 Glycyl-tRNA synthetase beta subunit C1C92_05730 PF00158 Sigma-54 interaction domain C1C92_05730 PF01590 GAF domain C1C92_05735 PF00753 Metallo-beta-lactamase superfamily C1C92_05735 PF00301 Rubredoxin C1C92_05735 PF00258 Flavodoxin C1C92_05740 PF18113 Rubredoxin binding C-terminal domain C1C92_05740 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_05750 PF12801 4Fe-4S binding domain C1C92_05760 PF01212 Beta-eliminating lyase C1C92_05765 PF03222 Tryptophan/tyrosine permease family C1C92_05770 PF03222 Tryptophan/tyrosine permease family C1C92_05790 PF00563 EAL domain C1C92_05790 PF01590 GAF domain C1C92_05790 PF00360 Phytochrome region C1C92_05790 PF00990 Diguanylate cyclase, GGDEF domain C1C92_05800 PF00356 Bacterial regulatory proteins, lacI family C1C92_05805 PF13458 Periplasmic binding protein C1C92_05810 PF02653 Branched-chain amino acid transport system / permease component C1C92_05815 PF11862 Domain of unknown function (DUF3382) C1C92_05815 PF02653 Branched-chain amino acid transport system / permease component C1C92_05820 PF00005 ABC transporter C1C92_05820 PF12399 Branched-chain amino acid ATP-binding cassette transporter C1C92_05825 PF00005 ABC transporter C1C92_05835 PF01810 LysE type translocator C1C92_05840 PF00581 Rhodanese-like domain C1C92_05845 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease C1C92_05845 PF01694 Rhomboid family C1C92_05850 PF12262 Bacterial virulence factor lipase N-terminal C1C92_05855 PF04380 Membrane fusogenic activity C1C92_05860 PF00175 Oxidoreductase NAD-binding domain C1C92_05865 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C1C92_05875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C1C92_05875 PF07497 Rho termination factor, RNA-binding domain C1C92_05875 PF07498 Rho termination factor, N-terminal domain C1C92_05880 PF00085 Thioredoxin C1C92_05885 PF00270 DEAD/DEAH box helicase C1C92_05885 PF00271 Helicase conserved C-terminal domain C1C92_05890 PF02541 Ppx/GppA phosphatase family C1C92_05900 PF04445 Putative SAM-dependent methyltransferase C1C92_05905 PF00563 EAL domain C1C92_05905 PF03707 Bacterial signalling protein N terminal repeat C1C92_05905 PF00990 Diguanylate cyclase, GGDEF domain C1C92_05910 PF01432 Peptidase family M3 C1C92_05915 PF00490 Delta-aminolevulinic acid dehydratase C1C92_05920 PF01026 TatD related DNase C1C92_05925 PF00902 Sec-independent protein translocase protein (TatC) C1C92_05930 PF02416 mttA/Hcf106 family C1C92_05935 PF02416 mttA/Hcf106 family C1C92_05940 PF03109 ABC1 family C1C92_05945 PF02036 SCP-2 sterol transfer family C1C92_05950 PF01209 ubiE/COQ5 methyltransferase family C1C92_05955 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C1C92_05960 PF07969 Amidohydrolase family C1C92_05995 PF03544 Gram-negative bacterial TonB protein C-terminal C1C92_06000 PF02472 Biopolymer transport protein ExbD/TolR C1C92_06005 PF01618 MotA/TolQ/ExbB proton channel family C1C92_06010 PF01618 MotA/TolQ/ExbB proton channel family C1C92_06020 PF00196 Bacterial regulatory proteins, luxR family C1C92_06020 PF03472 Autoinducer binding domain C1C92_06025 PF01380 SIS domain C1C92_06030 PF00455 DeoR C terminal sensor domain C1C92_06030 PF08220 DeoR-like helix-turn-helix domain C1C92_06035 PF00072 Response regulator receiver domain C1C92_06035 PF00486 Transcriptional regulatory protein, C terminal C1C92_06040 PF00672 HAMP domain C1C92_06040 PF00512 His Kinase A (phospho-acceptor) domain C1C92_06040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_06045 PF00905 Penicillin binding protein transpeptidase domain C1C92_06050 PF06123 Inner membrane protein CreD C1C92_06055 PF12804 MobA-like NTP transferase domain C1C92_06055 PF14602 Hexapeptide repeat of succinyl-transferase C1C92_06055 PF00132 Bacterial transferase hexapeptide (six repeats) C1C92_06060 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C1C92_06060 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain C1C92_06065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C1C92_06065 PF02874 ATP synthase alpha/beta family, beta-barrel domain C1C92_06070 PF00231 ATP synthase C1C92_06075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C1C92_06075 PF00306 ATP synthase alpha/beta chain, C terminal domain C1C92_06075 PF02874 ATP synthase alpha/beta family, beta-barrel domain C1C92_06080 PF00213 ATP synthase delta (OSCP) subunit C1C92_06085 PF00430 ATP synthase B/B' CF(0) C1C92_06090 PF00137 ATP synthase subunit C C1C92_06095 PF00119 ATP synthase A chain C1C92_06105 PF02195 ParB-like nuclease domain C1C92_06105 PF17762 HTH domain found in ParB protein C1C92_06110 PF13614 AAA domain C1C92_06115 PF02527 rRNA small subunit methyltransferase G C1C92_06120 PF13932 GidA associated domain C1C92_06120 PF01134 Glucose inhibited division protein A C1C92_06125 PF00258 Flavodoxin C1C92_06130 PF00593 TonB dependent receptor C1C92_06130 PF07715 TonB-dependent Receptor Plug Domain C1C92_06135 PF00005 ABC transporter C1C92_06140 PF00005 ABC transporter C1C92_06145 PF01497 Periplasmic binding protein C1C92_06150 PF01032 FecCD transport family C1C92_06155 PF07804 HipA-like C-terminal domain C1C92_06155 PF13657 HipA N-terminal domain C1C92_06175 PF13495 Phage integrase, N-terminal SAM-like domain C1C92_06175 PF00589 Phage integrase family C1C92_06180 PF00186 Dihydrofolate reductase C1C92_06185 PF13427 Domain of unknown function (DUF4111) C1C92_06185 PF01909 Nucleotidyltransferase domain C1C92_06190 PF00893 Small Multidrug Resistance protein C1C92_06195 PF00809 Pterin binding enzyme C1C92_06215 PF03551 Transcriptional regulator PadR-like family C1C92_06225 PF13610 DDE domain C1C92_06250 PF01636 Phosphotransferase enzyme family C1C92_06260 PF13610 DDE domain C1C92_06265 PF01636 Phosphotransferase enzyme family C1C92_06270 PF13610 DDE domain C1C92_06295 PF00271 Helicase conserved C-terminal domain C1C92_06295 PF04851 Type III restriction enzyme, res subunit C1C92_06295 PF08463 EcoEI R protein C-terminal C1C92_06295 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) C1C92_06300 PF02384 N-6 DNA Methylase C1C92_06300 PF12161 HsdM N-terminal domain C1C92_06325 PF13592 Winged helix-turn helix C1C92_06325 PF13358 DDE superfamily endonuclease C1C92_06365 PF00589 Phage integrase family C1C92_06365 PF02899 Phage integrase, N-terminal SAM-like domain C1C92_06370 PF01926 50S ribosome-binding GTPase C1C92_06370 PF12631 MnmE helical domain C1C92_06370 PF10396 GTP-binding protein TrmE N-terminus C1C92_06375 PF02096 60Kd inner membrane protein C1C92_06375 PF14849 YidC periplasmic domain C1C92_06380 PF01809 Putative membrane protein insertion efficiency factor C1C92_06385 PF00825 Ribonuclease P C1C92_06390 PF00468 Ribosomal protein L34 C1C92_06400 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_06405 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_06410 PF11638 DnaA N-terminal domain C1C92_06410 PF08299 Bacterial dnaA protein helix-turn-helix C1C92_06410 PF00308 Bacterial dnaA protein C1C92_06415 PF00712 DNA polymerase III beta subunit, N-terminal domain C1C92_06415 PF02767 DNA polymerase III beta subunit, central domain C1C92_06415 PF02768 DNA polymerase III beta subunit, C-terminal domain C1C92_06420 PF02463 RecF/RecN/SMC N terminal domain C1C92_06425 PF00204 DNA gyrase B C1C92_06425 PF00986 DNA gyrase B subunit, carboxyl terminus C1C92_06425 PF18053 DNA gyrase B subunit insert domain C1C92_06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_06425 PF01751 Toprim domain C1C92_06430 PF02311 AraC-like ligand binding domain C1C92_06430 PF12833 Helix-turn-helix domain C1C92_06435 PF12706 Beta-lactamase superfamily domain C1C92_06440 PF00011 Hsp20/alpha crystallin family C1C92_06445 PF00011 Hsp20/alpha crystallin family C1C92_06450 PF00155 Aminotransferase class I and II C1C92_06465 PF07690 Major Facilitator Superfamily C1C92_06470 PF00486 Transcriptional regulatory protein, C terminal C1C92_06470 PF00072 Response regulator receiver domain C1C92_06475 PF13492 GAF domain C1C92_06475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_06475 PF02702 Osmosensitive K+ channel His kinase sensor domain C1C92_06475 PF13493 Domain of unknown function (DUF4118) C1C92_06475 PF00512 His Kinase A (phospho-acceptor) domain C1C92_06480 PF02669 K+-transporting ATPase, c chain C1C92_06490 PF03814 Potassium-transporting ATPase A subunit C1C92_06505 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_06505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C1C92_06510 PF00512 His Kinase A (phospho-acceptor) domain C1C92_06510 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_06510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_06515 PF00873 AcrB/AcrD/AcrF family C1C92_06520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_06525 PF00440 Bacterial regulatory proteins, tetR family C1C92_06560 PF12146 Serine aminopeptidase, S33 C1C92_06565 PF00588 SpoU rRNA Methylase family C1C92_06565 PF12105 SpoU, rRNA methylase, C-terminal C1C92_06570 PF13291 ACT domain C1C92_06570 PF02824 TGS domain C1C92_06570 PF04607 Region found in RelA / SpoT proteins C1C92_06575 PF01192 RNA polymerase Rpb6 C1C92_06580 PF00625 Guanylate kinase C1C92_06590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C1C92_06605 PF00892 EamA-like transporter family C1C92_06625 PF03466 LysR substrate binding domain C1C92_06625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_06630 PF00579 tRNA synthetases class I (W and Y) C1C92_06635 PF00582 Universal stress protein family C1C92_06645 PF12241 Trans-2-enoyl-CoA reductase catalytic region C1C92_06645 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase C1C92_06645 PF07055 Enoyl reductase FAD binding domain C1C92_06650 PF00990 Diguanylate cyclase, GGDEF domain C1C92_06650 PF05230 MASE2 domain C1C92_06655 PF00210 Ferritin-like domain C1C92_06665 PF07690 Major Facilitator Superfamily C1C92_06670 PF01810 LysE type translocator C1C92_06680 PF15976 CS1-pili formation C-terminal C1C92_06680 PF16967 E-set like domain C1C92_06685 PF18649 EcpB C-terminal domain C1C92_06690 PF16449 Fimbrillin MatB C1C92_06695 PF00196 Bacterial regulatory proteins, luxR family C1C92_06695 PF00072 Response regulator receiver domain C1C92_06700 PF00512 His Kinase A (phospho-acceptor) domain C1C92_06700 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_06700 PF00072 Response regulator receiver domain C1C92_06700 PF00989 PAS fold C1C92_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_06700 PF01627 Hpt domain C1C92_06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_06710 PF07694 5TMR of 5TMR-LYT C1C92_06710 PF06580 Histidine kinase C1C92_06715 PF04397 LytTr DNA-binding domain C1C92_06715 PF00072 Response regulator receiver domain C1C92_06720 PF07690 Major Facilitator Superfamily C1C92_06725 PF02222 ATP-grasp domain C1C92_06725 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C1C92_06730 PF00731 AIR carboxylase C1C92_06735 PF00593 TonB dependent receptor C1C92_06735 PF07715 TonB-dependent Receptor Plug Domain C1C92_06740 PF01177 Asp/Glu/Hydantoin racemase C1C92_06775 PF00899 ThiF family C1C92_06780 PF02657 Fe-S metabolism associated domain C1C92_06785 PF00266 Aminotransferase class-V C1C92_06790 PF00580 UvrD/REP helicase N-terminal domain C1C92_06790 PF13361 UvrD-like helicase C-terminal domain C1C92_06795 PF00990 Diguanylate cyclase, GGDEF domain C1C92_06795 PF00563 EAL domain C1C92_06795 PF03707 Bacterial signalling protein N terminal repeat C1C92_06800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C1C92_06805 PF00107 Zinc-binding dehydrogenase C1C92_06805 PF08240 Alcohol dehydrogenase GroES-like domain C1C92_06810 PF00155 Aminotransferase class I and II C1C92_06815 PF00440 Bacterial regulatory proteins, tetR family C1C92_06815 PF08360 QacR-like protein, C-terminal region C1C92_06820 PF01370 NAD dependent epimerase/dehydratase family C1C92_06835 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) C1C92_06850 PF03611 PTS system sugar-specific permease component C1C92_06860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C1C92_06865 PF00356 Bacterial regulatory proteins, lacI family C1C92_06865 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C1C92_06885 PF03748 Flagellar basal body-associated protein FliL C1C92_06890 PF04345 Chorismate lyase C1C92_06895 PF01040 UbiA prenyltransferase family C1C92_06900 PF01553 Acyltransferase C1C92_06905 PF00717 Peptidase S24-like C1C92_06905 PF01726 LexA DNA binding domain C1C92_06915 PF02630 SCO1/SenC C1C92_06920 PF01554 MatE C1C92_06925 PF00588 SpoU rRNA Methylase family C1C92_06930 PF00512 His Kinase A (phospho-acceptor) domain C1C92_06930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_06930 PF00672 HAMP domain C1C92_06930 PF16527 Two-component sensor protein CpxA, periplasmic domain C1C92_06935 PF00486 Transcriptional regulatory protein, C terminal C1C92_06935 PF00072 Response regulator receiver domain C1C92_06940 PF01545 Cation efflux family C1C92_06940 PF16916 Dimerisation domain of Zinc Transporter C1C92_06945 PF06426 Serine acetyltransferase, N-terminal C1C92_06945 PF00132 Bacterial transferase hexapeptide (six repeats) C1C92_06955 PF06005 Cell division protein ZapB C1C92_06965 PF01612 3'-5' exonuclease C1C92_06965 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C1C92_06965 PF01367 5'-3' exonuclease, C-terminal SAM fold C1C92_06965 PF00476 DNA polymerase family A C1C92_06970 PF00132 Bacterial transferase hexapeptide (six repeats) C1C92_07010 PF00356 Bacterial regulatory proteins, lacI family C1C92_07015 PF02837 Glycosyl hydrolases family 2, sugar binding domain C1C92_07015 PF02929 Beta galactosidase small chain C1C92_07015 PF16353 Domain of unknown function(DUF4981) C1C92_07015 PF00703 Glycosyl hydrolases family 2 C1C92_07015 PF02836 Glycosyl hydrolases family 2, TIM barrel domain C1C92_07020 PF04074 YhcH/YjgK/YiaL C1C92_07025 PF13520 Amino acid permease C1C92_07030 PF01588 Putative tRNA binding domain C1C92_07035 PF13520 Amino acid permease C1C92_07040 PF13593 SBF-like CPA transporter family (DUF4137) C1C92_07045 PF12867 DinB superfamily C1C92_07045 PF03781 Sulfatase-modifying factor enzyme 1 C1C92_07060 PF00756 Putative esterase C1C92_07065 PF00107 Zinc-binding dehydrogenase C1C92_07065 PF08240 Alcohol dehydrogenase GroES-like domain C1C92_07070 PF03466 LysR substrate binding domain C1C92_07070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_07095 PF13361 UvrD-like helicase C-terminal domain C1C92_07095 PF00580 UvrD/REP helicase N-terminal domain C1C92_07115 PF03466 LysR substrate binding domain C1C92_07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_07130 PF14001 YdfZ protein C1C92_07150 PF03466 LysR substrate binding domain C1C92_07150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_07155 PF01810 LysE type translocator C1C92_07160 PF06206 CpeT/CpcT family (DUF1001) C1C92_07165 PF01810 LysE type translocator C1C92_07170 PF12833 Helix-turn-helix domain C1C92_07175 PF00892 EamA-like transporter family C1C92_07180 PF00171 Aldehyde dehydrogenase family C1C92_07185 PF07883 Cupin domain C1C92_07185 PF01381 Helix-turn-helix C1C92_07190 PF00202 Aminotransferase class-III C1C92_07195 PF00171 Aldehyde dehydrogenase family C1C92_07200 PF00117 Glutamine amidotransferase class-I C1C92_07200 PF02540 NAD synthase C1C92_07200 PF00958 GMP synthase C terminal domain C1C92_07205 PF03466 LysR substrate binding domain C1C92_07205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_07210 PF00294 pfkB family carbohydrate kinase C1C92_07215 PF02082 Transcriptional regulator C1C92_07230 PF02646 RmuC family C1C92_07235 PF02386 Cation transport protein C1C92_07240 PF02080 TrkA-C domain C1C92_07240 PF02254 TrkA-N domain C1C92_07245 PF01029 NusB family C1C92_07245 PF01189 16S rRNA methyltransferase RsmB/F C1C92_07250 PF00551 Formyl transferase C1C92_07250 PF02911 Formyl transferase, C-terminal domain C1C92_07255 PF01327 Polypeptide deformylase C1C92_07265 PF17782 DprA winged helix domain C1C92_07265 PF02481 DNA recombination-mediator protein A C1C92_07270 PF04361 Protein of unknown function (DUF494) C1C92_07275 PF01396 Topoisomerase DNA binding C4 zinc finger C1C92_07280 PF01300 Telomere recombination C1C92_07285 PF01218 Coproporphyrinogen III oxidase C1C92_07290 PF01488 Shikimate / quinate 5-dehydrogenase C1C92_07290 PF08501 Shikimate dehydrogenase substrate binding domain C1C92_07290 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C1C92_07300 PF01926 50S ribosome-binding GTPase C1C92_07305 PF00034 Cytochrome c C1C92_07310 PF04220 Der GTPase activator (YihI) C1C92_07315 PF10675 Protein of unknown function (DUF2489) C1C92_07320 PF04055 Radical SAM superfamily C1C92_07320 PF06969 HemN C-terminal domain C1C92_07325 PF00962 Adenosine/AMP deaminase C1C92_07330 PF00072 Response regulator receiver domain C1C92_07330 PF02954 Bacterial regulatory protein, Fis family C1C92_07330 PF00158 Sigma-54 interaction domain C1C92_07335 PF00989 PAS fold C1C92_07335 PF00512 His Kinase A (phospho-acceptor) domain C1C92_07335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_07345 PF00120 Glutamine synthetase, catalytic domain C1C92_07345 PF03951 Glutamine synthetase, beta-Grasp domain C1C92_07355 PF03631 Virulence factor BrkB C1C92_07360 PF02580 D-Tyr-tRNA(Tyr) deacylase C1C92_07370 PF00583 Acetyltransferase (GNAT) family C1C92_07370 PF09500 Putative thioesterase (yiiD_Cterm) C1C92_07380 PF00271 Helicase conserved C-terminal domain C1C92_07380 PF00270 DEAD/DEAH box helicase C1C92_07380 PF17191 RecG wedge domain C1C92_07385 PF13091 PLD-like domain C1C92_07390 PF02447 GntP family permease C1C92_07395 PF01202 Shikimate kinase C1C92_07400 PF00920 Dehydratase family C1C92_07405 PF01081 KDPG and KHG aldolase C1C92_07420 PF00356 Bacterial regulatory proteins, lacI family C1C92_07420 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C1C92_07430 PF01551 Peptidase family M23 C1C92_07435 PF01676 Metalloenzyme superfamily C1C92_07435 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C1C92_07440 PF00581 Rhodanese-like domain C1C92_07445 PF02556 Preprotein translocase subunit SecB C1C92_07450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C1C92_07450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C1C92_07455 PF01106 NifU-like domain C1C92_07455 PF01521 Iron-sulphur cluster biosynthesis C1C92_07460 PF00156 Phosphoribosyl transferase domain C1C92_07465 PF00561 alpha/beta hydrolase fold C1C92_07480 PF16921 Tex protein YqgF-like domain C1C92_07480 PF00575 S1 RNA binding domain C1C92_07480 PF17674 HHH domain C1C92_07480 PF09371 Tex-like protein N-terminal domain C1C92_07485 PF03449 Transcription elongation factor, N-terminal C1C92_07485 PF01272 Transcription elongation factor, GreA/GreB, C-term C1C92_07490 PF00072 Response regulator receiver domain C1C92_07490 PF00486 Transcriptional regulatory protein, C terminal C1C92_07495 PF00672 HAMP domain C1C92_07495 PF00512 His Kinase A (phospho-acceptor) domain C1C92_07495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_07505 PF00338 Ribosomal protein S10p/S20e C1C92_07510 PF00297 Ribosomal protein L3 C1C92_07515 PF00573 Ribosomal protein L4/L1 family C1C92_07520 PF00276 Ribosomal protein L23 C1C92_07525 PF00181 Ribosomal Proteins L2, RNA binding domain C1C92_07525 PF03947 Ribosomal Proteins L2, C-terminal domain C1C92_07530 PF00203 Ribosomal protein S19 C1C92_07535 PF00237 Ribosomal protein L22p/L17e C1C92_07540 PF00189 Ribosomal protein S3, C-terminal domain C1C92_07540 PF07650 KH domain C1C92_07545 PF00252 Ribosomal protein L16p/L10e C1C92_07550 PF00831 Ribosomal L29 protein C1C92_07555 PF00366 Ribosomal protein S17 C1C92_07560 PF00238 Ribosomal protein L14p/L23e C1C92_07565 PF00467 KOW motif C1C92_07565 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C1C92_07570 PF00281 Ribosomal protein L5 C1C92_07570 PF00673 ribosomal L5P family C-terminus C1C92_07575 PF00253 Ribosomal protein S14p/S29e C1C92_07580 PF00410 Ribosomal protein S8 C1C92_07585 PF00347 Ribosomal protein L6 C1C92_07590 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C1C92_07595 PF00333 Ribosomal protein S5, N-terminal domain C1C92_07595 PF03719 Ribosomal protein S5, C-terminal domain C1C92_07600 PF00327 Ribosomal protein L30p/L7e C1C92_07605 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C1C92_07610 PF00344 SecY translocase C1C92_07615 PF00444 Ribosomal protein L36 C1C92_07620 PF00416 Ribosomal protein S13/S18 C1C92_07625 PF00411 Ribosomal protein S11 C1C92_07630 PF01479 S4 domain C1C92_07630 PF00163 Ribosomal protein S4/S9 N-terminal domain C1C92_07635 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C1C92_07635 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C1C92_07635 PF01000 RNA polymerase Rpb3/RpoA insert domain C1C92_07640 PF01196 Ribosomal protein L17 C1C92_07695 PF02254 TrkA-N domain C1C92_07695 PF00999 Sodium/hydrogen exchanger family C1C92_07700 PF02525 Flavodoxin-like fold C1C92_07705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_07705 PF03466 LysR substrate binding domain C1C92_07710 PF00106 short chain dehydrogenase C1C92_07725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain C1C92_07725 PF00326 Prolyl oligopeptidase family C1C92_07730 PF16868 NMT1-like family C1C92_07745 PF07947 YhhN family C1C92_07750 PF07690 Major Facilitator Superfamily C1C92_07755 PF13533 Biotin-lipoyl like C1C92_07760 PF03466 LysR substrate binding domain C1C92_07760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_07770 PF00375 Sodium:dicarboxylate symporter family C1C92_07775 PF10678 Protein of unknown function (DUF2492) C1C92_07780 PF01914 MarC family integral membrane protein C1C92_07785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_07785 PF03466 LysR substrate binding domain C1C92_07790 PF02416 mttA/Hcf106 family C1C92_07800 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_07800 PF01464 Transglycosylase SLT domain C1C92_07805 PF13091 PLD-like domain C1C92_07815 PF00440 Bacterial regulatory proteins, tetR family C1C92_07820 PF07226 Protein of unknown function (DUF1422) C1C92_07835 PF02881 SRP54-type protein, helical bundle domain C1C92_07835 PF00448 SRP54-type protein, GTPase domain C1C92_07840 PF00005 ABC transporter C1C92_07845 PF18075 FtsX extracellular domain C1C92_07850 PF00140 Sigma-70 factor, region 1.2 C1C92_07850 PF04542 Sigma-70 region 2 C1C92_07850 PF04545 Sigma-70, region 4 C1C92_07855 PF00484 Carbonic anhydrase C1C92_07860 PF07702 UTRA domain C1C92_07860 PF00392 Bacterial regulatory proteins, gntR family C1C92_07865 PF01979 Amidohydrolase family C1C92_07870 PF00491 Arginase family C1C92_07875 PF01175 Urocanase Rossmann-like domain C1C92_07875 PF17392 Urocanase C-terminal domain C1C92_07875 PF17391 Urocanase N-terminal domain C1C92_07880 PF00221 Aromatic amino acid lyase C1C92_07885 PF01699 Sodium/calcium exchanger protein C1C92_07890 PF00563 EAL domain C1C92_07890 PF12792 CSS motif domain associated with EAL C1C92_07925 PF00263 Bacterial type II and III secretion system protein C1C92_07925 PF03958 Bacterial type II/III secretion system short domain C1C92_07940 PF00437 Type II/IV secretion system protein C1C92_07945 PF00482 Type II secretion system (T2SS), protein F C1C92_07960 PF08334 Type II secretion system (T2SS), protein G C1C92_07960 PF07963 Prokaryotic N-terminal methylation motif C1C92_07965 PF00114 Pilin (bacterial filament) C1C92_07965 PF07963 Prokaryotic N-terminal methylation motif C1C92_07995 PF04085 rod shape-determining protein MreC C1C92_08000 PF04093 rod shape-determining protein MreD C1C92_08005 PF02545 Maf-like protein C1C92_08010 PF00575 S1 RNA binding domain C1C92_08010 PF10150 Ribonuclease E/G family C1C92_08020 PF00795 Carbon-nitrogen hydrolase C1C92_08035 PF01914 MarC family integral membrane protein C1C92_08040 PF07690 Major Facilitator Superfamily C1C92_08050 PF04228 Putative neutral zinc metallopeptidase C1C92_08070 PF00999 Sodium/hydrogen exchanger family C1C92_08075 PF02607 B12 binding domain C1C92_08075 PF02965 Vitamin B12 dependent methionine synthase, activation domain C1C92_08075 PF02574 Homocysteine S-methyltransferase C1C92_08075 PF02310 B12 binding domain C1C92_08075 PF00809 Pterin binding enzyme C1C92_08085 PF08443 RimK-like ATP-grasp domain C1C92_08085 PF18030 RimK PreATP-grasp domain C1C92_08095 PF00486 Transcriptional regulatory protein, C terminal C1C92_08095 PF00072 Response regulator receiver domain C1C92_08110 PF13667 ThiC-associated domain C1C92_08110 PF01964 Radical SAM ThiC family C1C92_08115 PF02581 Thiamine monophosphate synthase C1C92_08120 PF00899 ThiF family C1C92_08130 PF05690 Thiazole biosynthesis protein ThiG C1C92_08155 PF00132 Bacterial transferase hexapeptide (six repeats) C1C92_08160 PF13036 Peptidoglycan-synthase activator LpoB C1C92_08170 PF06055 Exopolysaccharide synthesis, ExoD C1C92_08180 PF08803 Putative mono-oxygenase ydhR C1C92_08185 PF01638 HxlR-like helix-turn-helix C1C92_08200 PF07715 TonB-dependent Receptor Plug Domain C1C92_08200 PF00593 TonB dependent receptor C1C92_08210 PF08241 Methyltransferase domain C1C92_08220 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded C1C92_08225 PF03692 Putative zinc- or iron-chelating domain C1C92_08230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C1C92_08235 PF01722 BolA-like protein C1C92_08245 PF05494 MlaC protein C1C92_08250 PF02470 MlaD protein C1C92_08255 PF02405 Permease MlaE C1C92_08260 PF00005 ABC transporter C1C92_08265 PF01380 SIS domain C1C92_08265 PF00571 CBS domain C1C92_08280 PF03968 OstA-like protein C1C92_08285 PF00005 ABC transporter C1C92_08285 PF12399 Branched-chain amino acid ATP-binding cassette transporter C1C92_08290 PF00309 Sigma-54 factor, Activator interacting domain (AID) C1C92_08290 PF04963 Sigma-54 factor, core binding domain C1C92_08290 PF04552 Sigma-54, DNA binding domain C1C92_08295 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C1C92_08300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C1C92_08305 PF03668 P-loop ATPase protein family C1C92_08310 PF00381 PTS HPr component phosphorylation site C1C92_08315 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C1C92_08315 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C1C92_08315 PF02378 Phosphotransferase system, EIIC C1C92_08320 PF07071 KDGP aldolase C1C92_08325 PF03841 L-seryl-tRNA selenium transferase C1C92_08330 PF01979 Amidohydrolase family C1C92_08360 PF13180 PDZ domain C1C92_08365 PF13180 PDZ domain C1C92_08365 PF00595 PDZ domain C1C92_08375 PF03969 AFG1-like ATPase C1C92_08380 PF00572 Ribosomal protein L13 C1C92_08385 PF00380 Ribosomal protein S9/S16 C1C92_08390 PF00355 Rieske [2Fe-2S] domain C1C92_08390 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal C1C92_08395 PF00033 Cytochrome b/b6/petB C1C92_08395 PF00032 Cytochrome b(C-terminal)/b6/petD C1C92_08400 PF02167 Cytochrome C1 family C1C92_08405 PF02798 Glutathione S-transferase, N-terminal domain C1C92_08405 PF00043 Glutathione S-transferase, C-terminal domain C1C92_08410 PF04386 Stringent starvation protein B C1C92_08415 PF04972 BON domain C1C92_08420 PF13580 SIS domain C1C92_08425 PF02021 Uncharacterised protein family UPF0102 C1C92_08430 PF04348 LppC putative lipoprotein C1C92_08435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C1C92_08445 PF02381 MraZ protein, putative antitoxin-like C1C92_08450 PF01795 MraW methylase family C1C92_08455 PF04999 Cell division protein FtsL C1C92_08460 PF03717 Penicillin-binding Protein dimerisation domain C1C92_08460 PF00905 Penicillin binding protein transpeptidase domain C1C92_08465 PF02875 Mur ligase family, glutamate ligase domain C1C92_08465 PF08245 Mur ligase middle domain C1C92_08465 PF01225 Mur ligase family, catalytic domain C1C92_08470 PF08245 Mur ligase middle domain C1C92_08470 PF01225 Mur ligase family, catalytic domain C1C92_08470 PF02875 Mur ligase family, glutamate ligase domain C1C92_08475 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 C1C92_08475 PF00953 Glycosyl transferase family 4 C1C92_08480 PF08245 Mur ligase middle domain C1C92_08480 PF02875 Mur ligase family, glutamate ligase domain C1C92_08485 PF01098 Cell cycle protein C1C92_08490 PF04101 Glycosyltransferase family 28 C-terminal domain C1C92_08490 PF03033 Glycosyltransferase family 28 N-terminal domain C1C92_08495 PF01225 Mur ligase family, catalytic domain C1C92_08495 PF02875 Mur ligase family, glutamate ligase domain C1C92_08495 PF08245 Mur ligase middle domain C1C92_08500 PF03799 Cell division protein FtsQ C1C92_08500 PF08478 POTRA domain, FtsQ-type C1C92_08505 PF02491 SHS2 domain inserted in FTSA C1C92_08510 PF12327 FtsZ family, C-terminal domain C1C92_08510 PF00091 Tubulin/FtsZ family, GTPase domain C1C92_08515 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C1C92_08525 PF02810 SEC-C motif C1C92_08525 PF07517 SecA DEAD-like domain C1C92_08525 PF01043 SecA preprotein cross-linking domain C1C92_08525 PF07516 SecA Wing and Scaffold domain C1C92_08535 PF00293 NUDIX domain C1C92_08540 PF03884 DNA gyrase inhibitor YacG C1C92_08545 PF07072 Cell division protein C1C92_08550 PF01121 Dephospho-CoA kinase C1C92_08555 PF01478 Type IV leader peptidase family C1C92_08555 PF06750 Bacterial Peptidase A24 N-terminal domain C1C92_08560 PF00482 Type II secretion system (T2SS), protein F C1C92_08565 PF00437 Type II/IV secretion system protein C1C92_08565 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C1C92_08570 PF07963 Prokaryotic N-terminal methylation motif C1C92_08575 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C1C92_08575 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C1C92_08590 PF00392 Bacterial regulatory proteins, gntR family C1C92_08590 PF07729 FCD domain C1C92_08595 PF17831 Pyruvate dehydrogenase E1 component middle domain C1C92_08595 PF00456 Transketolase, thiamine diphosphate binding domain C1C92_08600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C1C92_08600 PF00364 Biotin-requiring enzyme C1C92_08600 PF02817 e3 binding domain C1C92_08605 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_08605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C1C92_08615 PF12729 Four helix bundle sensory module for signal transduction C1C92_08615 PF00672 HAMP domain C1C92_08615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_08620 PF00672 HAMP domain C1C92_08620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_08620 PF12729 Four helix bundle sensory module for signal transduction C1C92_08630 PF11791 Aconitate B N-terminal domain C1C92_08630 PF00330 Aconitase family (aconitate hydratase) C1C92_08630 PF06434 Aconitate hydratase 2 N-terminus C1C92_08635 PF00563 EAL domain C1C92_08635 PF12792 CSS motif domain associated with EAL C1C92_08640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_08640 PF03466 LysR substrate binding domain C1C92_08645 PF01810 LysE type translocator C1C92_08650 PF04030 D-arabinono-1,4-lactone oxidase C1C92_08650 PF01565 FAD binding domain C1C92_08655 PF02492 CobW/HypB/UreG, nucleotide-binding domain C1C92_08655 PF07683 Cobalamin synthesis protein cobW C-terminal domain C1C92_08660 PF07690 Major Facilitator Superfamily C1C92_08670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C1C92_08675 PF02152 Dihydroneopterin aldolase C1C92_08680 PF02660 Glycerol-3-phosphate acyltransferase C1C92_08720 PF02028 BCCT, betaine/carnitine/choline family transporter C1C92_08725 PF05192 MutS domain III C1C92_08725 PF05190 MutS family domain IV C1C92_08725 PF00488 MutS domain V C1C92_08725 PF05188 MutS domain II C1C92_08725 PF01624 MutS domain I C1C92_08745 PF02384 N-6 DNA Methylase C1C92_08750 PF01420 Type I restriction modification DNA specificity domain C1C92_08755 PF07728 AAA domain (dynein-related subfamily) C1C92_08755 PF12102 Domain of unknown function (DUF3578) C1C92_08755 PF07728 AAA domain (dynein-related subfamily) C1C92_08755 PF12102 Domain of unknown function (DUF3578) C1C92_08765 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C1C92_08765 PF11867 Domain of unknown function (DUF3387) C1C92_08765 PF18766 SWI2/SNF2 ATPase C1C92_08800 PF13538 UvrD-like helicase C-terminal domain C1C92_08815 PF02464 Competence-damaged protein C1C92_08820 PF00154 recA bacterial DNA recombination protein C1C92_08825 PF02631 RecX family C1C92_08830 PF01411 tRNA synthetases class II (A) C1C92_08830 PF02272 DHHA1 domain C1C92_08830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C1C92_08835 PF01842 ACT domain C1C92_08835 PF13840 ACT domain C1C92_08835 PF00696 Amino acid kinase family C1C92_08840 PF02599 Global regulator protein family C1C92_08875 PF00768 D-alanyl-D-alanine carboxypeptidase C1C92_08880 PF09335 SNARE associated Golgi protein C1C92_08885 PF00571 CBS domain C1C92_08885 PF01595 Cyclin M transmembrane N-terminal domain C1C92_08885 PF03471 Transporter associated domain C1C92_08890 PF00133 tRNA synthetases class I (I, L, M and V) C1C92_08890 PF10458 Valyl tRNA synthetase tRNA binding arm C1C92_08890 PF08264 Anticodon-binding domain of tRNA C1C92_08895 PF04364 DNA polymerase III chi subunit, HolC C1C92_08900 PF02789 Cytosol aminopeptidase family, N-terminal domain C1C92_08900 PF00883 Cytosol aminopeptidase family, catalytic domain C1C92_08905 PF03739 Lipopolysaccharide export system permease LptF/LptG C1C92_08910 PF03739 Lipopolysaccharide export system permease LptF/LptG C1C92_08930 PF00909 Ammonium Transporter Family C1C92_08935 PF05958 tRNA (Uracil-5-)-methyltransferase C1C92_08935 PF01938 TRAM domain C1C92_08945 PF14245 Type IV pilin PilA C1C92_08945 PF07963 Prokaryotic N-terminal methylation motif C1C92_08950 PF01026 TatD related DNase C1C92_08955 PF01773 Na+ dependent nucleoside transporter N-terminus C1C92_08955 PF07662 Na+ dependent nucleoside transporter C-terminus C1C92_08955 PF07670 Nucleoside recognition C1C92_08965 PF01791 DeoC/LacD family aldolase C1C92_08970 PF02885 Glycosyl transferase family, helical bundle domain C1C92_08970 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain C1C92_08970 PF00591 Glycosyl transferase family, a/b domain C1C92_08975 PF01676 Metalloenzyme superfamily C1C92_08980 PF01048 Phosphorylase superfamily C1C92_08985 PF13426 PAS domain C1C92_08985 PF05231 MASE1 C1C92_08985 PF08447 PAS fold C1C92_08985 PF00990 Diguanylate cyclase, GGDEF domain C1C92_08985 PF00563 EAL domain C1C92_08985 PF08448 PAS fold C1C92_08995 PF18429 Domain of unknown function (DUF5609) C1C92_09010 PF18073 Rubredoxin metal binding domain C1C92_09020 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ C1C92_09025 PF00216 Bacterial DNA-binding protein C1C92_09040 PF01207 Dihydrouridine synthase (Dus) C1C92_09045 PF01475 Ferric uptake regulator family C1C92_09060 PF05525 Branched-chain amino acid transport protein C1C92_09065 PF05175 Methyltransferase small domain C1C92_09070 PF00271 Helicase conserved C-terminal domain C1C92_09070 PF00270 DEAD/DEAH box helicase C1C92_09075 PF03883 Peroxide stress protein YaaA C1C92_09080 PF00437 Type II/IV secretion system protein C1C92_09085 PF00437 Type II/IV secretion system protein C1C92_09090 PF01168 Alanine racemase, N-terminal domain C1C92_09095 PF14748 Pyrroline-5-carboxylate reductase dimerisation C1C92_09095 PF03807 NADP oxidoreductase coenzyme F420-dependent C1C92_09100 PF02325 YGGT family C1C92_09105 PF02594 Uncharacterised ACR, YggU family COG1872 C1C92_09125 PF06062 Uncharacterised protein family (UPF0231) C1C92_09130 PF17853 GGDEF-like domain C1C92_09130 PF13556 PucR C-terminal helix-turn-helix domain C1C92_09130 PF05651 Putative sugar diacid recognition C1C92_09135 PF02447 GntP family permease C1C92_09140 PF02595 Glycerate kinase family C1C92_09150 PF00255 Glutathione peroxidase C1C92_09155 PF03466 LysR substrate binding domain C1C92_09155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_09160 PF07670 Nucleoside recognition C1C92_09160 PF07662 Na+ dependent nucleoside transporter C-terminus C1C92_09160 PF01773 Na+ dependent nucleoside transporter N-terminus C1C92_09165 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C1C92_09165 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C1C92_09170 PF00472 RF-1 domain C1C92_09175 PF00543 Nitrogen regulatory protein P-II C1C92_09190 PF00005 ABC transporter C1C92_09190 PF08402 TOBE domain C1C92_09195 PF04261 Dyp-type peroxidase family C1C92_09200 PF02863 Arginine repressor, C-terminal domain C1C92_09200 PF01316 Arginine repressor, DNA binding domain C1C92_09205 PF00005 ABC transporter C1C92_09210 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_09215 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_09220 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_09225 PF00056 lactate/malate dehydrogenase, NAD binding domain C1C92_09225 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C1C92_09230 PF08238 Sel1 repeat C1C92_09235 PF00175 Oxidoreductase NAD-binding domain C1C92_09235 PF00042 Globin C1C92_09235 PF00970 Oxidoreductase FAD-binding domain C1C92_09240 PF02082 Transcriptional regulator C1C92_09245 PF01595 Cyclin M transmembrane N-terminal domain C1C92_09245 PF03471 Transporter associated domain C1C92_09245 PF00571 CBS domain C1C92_09250 PF01578 Cytochrome C assembly protein C1C92_09255 PF00448 SRP54-type protein, GTPase domain C1C92_09255 PF02881 SRP54-type protein, helical bundle domain C1C92_09255 PF02978 Signal peptide binding domain C1C92_09260 PF00886 Ribosomal protein S16 C1C92_09265 PF05239 PRC-barrel domain C1C92_09265 PF01782 RimM N-terminal domain C1C92_09270 PF01746 tRNA (Guanine-1)-methyltransferase C1C92_09275 PF01245 Ribosomal protein L19 C1C92_09285 PF02976 DNA mismatch repair enzyme MutH C1C92_09290 PF00293 NUDIX domain C1C92_09295 PF01590 GAF domain C1C92_09295 PF05524 PEP-utilising enzyme, N-terminal C1C92_09295 PF00391 PEP-utilising enzyme, mobile domain C1C92_09295 PF02896 PEP-utilising enzyme, TIM barrel domain C1C92_09300 PF01790 Prolipoprotein diacylglyceryl transferase C1C92_09305 PF00303 Thymidylate synthase C1C92_09310 PF06965 Na+/H+ antiporter 1 C1C92_09320 PF03466 LysR substrate binding domain C1C92_09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_09325 PF01022 Bacterial regulatory protein, arsR family C1C92_09330 PF01649 Ribosomal protein S20 C1C92_09335 PF03023 Lipid II flippase MurJ C1C92_09340 PF06574 FAD synthetase C1C92_09340 PF01687 Riboflavin kinase C1C92_09345 PF08264 Anticodon-binding domain of tRNA C1C92_09345 PF06827 Zinc finger found in FPG and IleRS C1C92_09345 PF00133 tRNA synthetases class I (I, L, M and V) C1C92_09350 PF01252 Signal peptidase (SPase) II C1C92_09355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C1C92_09360 PF02401 LytB protein C1C92_09365 PF07963 Prokaryotic N-terminal methylation motif C1C92_09365 PF14245 Type IV pilin PilA C1C92_09400 PF00795 Carbon-nitrogen hydrolase C1C92_09400 PF02540 NAD synthase C1C92_09405 PF00543 Nitrogen regulatory protein P-II C1C92_09415 PF02664 S-Ribosylhomocysteinase (LuxS) C1C92_09420 PF00990 Diguanylate cyclase, GGDEF domain C1C92_09425 PF08461 Ribonuclease R winged-helix domain C1C92_09425 PF08206 Ribonuclease B OB domain C1C92_09425 PF17876 Cold shock domain C1C92_09425 PF00773 RNB domain C1C92_09425 PF00575 S1 RNA binding domain C1C92_09430 PF08032 RNA 2'-O ribose methyltransferase substrate binding C1C92_09430 PF00588 SpoU rRNA Methylase family C1C92_09440 PF13673 Acetyltransferase (GNAT) domain C1C92_09450 PF01566 Natural resistance-associated macrophage protein C1C92_09455 PF01250 Ribosomal protein S6 C1C92_09460 PF01084 Ribosomal protein S18 C1C92_09465 PF03948 Ribosomal protein L9, C-terminal domain C1C92_09465 PF01281 Ribosomal protein L9, N-terminal domain C1C92_09470 PF00175 Oxidoreductase NAD-binding domain C1C92_09470 PF00970 Oxidoreductase FAD-binding domain C1C92_09490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C1C92_09500 PF02801 Beta-ketoacyl synthase, C-terminal domain C1C92_09500 PF00109 Beta-ketoacyl synthase, N-terminal domain C1C92_09500 PF16197 Ketoacyl-synthetase C-terminal extension C1C92_09500 PF14765 Polyketide synthase dehydratase C1C92_09500 PF08240 Alcohol dehydrogenase GroES-like domain C1C92_09500 PF08990 Erythronolide synthase docking C1C92_09500 PF08659 KR domain C1C92_09500 PF00698 Acyl transferase domain C1C92_09500 PF00550 Phosphopantetheine attachment site C1C92_09505 PF09335 SNARE associated Golgi protein C1C92_09510 PF05193 Peptidase M16 inactive domain C1C92_09510 PF00675 Insulinase (Peptidase family M16) C1C92_09515 PF04262 Glutamate-cysteine ligase C1C92_09520 PF03605 Anaerobic c4-dicarboxylate membrane transporter C1C92_09525 PF10415 Fumarase C C-terminus C1C92_09525 PF00206 Lyase C1C92_09530 PF04186 FxsA cytoplasmic membrane protein C1C92_09540 PF00166 Chaperonin 10 Kd subunit C1C92_09545 PF00118 TCP-1/cpn60 chaperonin family C1C92_09555 PF00563 EAL domain C1C92_09555 PF00990 Diguanylate cyclase, GGDEF domain C1C92_09555 PF03707 Bacterial signalling protein N terminal repeat C1C92_09565 PF00849 RNA pseudouridylate synthase C1C92_09570 PF00176 SNF2 family N-terminal domain C1C92_09570 PF00271 Helicase conserved C-terminal domain C1C92_09570 PF18337 RapA N-terminal Tudor like domain C1C92_09570 PF18339 RapA N-terminal Tudor like domain 1 C1C92_09570 PF12137 RNA polymerase recycling family C-terminal C1C92_09610 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_09615 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_09620 PF12857 TOBE-like domain C1C92_09620 PF00005 ABC transporter C1C92_09625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_09625 PF03466 LysR substrate binding domain C1C92_09630 PF18416 N-acetylglucosamine binding protein domain 2 C1C92_09630 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading C1C92_09635 PF00672 HAMP domain C1C92_09635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_09635 PF17200 Single Cache domain 2 C1C92_09660 PF11230 Protein of unknown function (DUF3029) C1C92_09665 PF04055 Radical SAM superfamily C1C92_09675 PF03466 LysR substrate binding domain C1C92_09675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_09680 PF00155 Aminotransferase class I and II C1C92_09695 PF06564 Cellulose biosynthesis protein BcsQ C1C92_09700 PF00535 Glycosyl transferase family 2 C1C92_09700 PF07238 PilZ domain C1C92_09705 PF03170 Bacterial cellulose synthase subunit C1C92_09710 PF01270 Glycosyl hydrolases family 8 C1C92_09720 PF02583 Metal-sensitive transcriptional repressor C1C92_09735 PF11852 Domain of unknown function (DUF3372) C1C92_09735 PF03714 Bacterial pullanase-associated domain C1C92_09735 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C1C92_09735 PF18494 Pullulanase Ins domain C1C92_09735 PF17967 Pullulanase N2 domain C1C92_09740 PF00403 Heavy-metal-associated domain C1C92_09745 PF08534 Redoxin C1C92_09755 PF00753 Metallo-beta-lactamase superfamily C1C92_09755 PF14864 Alkyl sulfatase C-terminal C1C92_09755 PF14863 Alkyl sulfatase dimerisation C1C92_09760 PF00271 Helicase conserved C-terminal domain C1C92_09760 PF00270 DEAD/DEAH box helicase C1C92_09765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_09765 PF08447 PAS fold C1C92_09775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_09785 PF10952 Protein of unknown function (DUF2753) C1C92_09790 PF00378 Enoyl-CoA hydratase/isomerase C1C92_09805 PF00106 short chain dehydrogenase C1C92_09810 PF00929 Exonuclease C1C92_09815 PF04073 Aminoacyl-tRNA editing domain C1C92_09815 PF03129 Anticodon binding domain C1C92_09815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C1C92_09820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_09820 PF00672 HAMP domain C1C92_09820 PF12729 Four helix bundle sensory module for signal transduction C1C92_09825 PF01330 RuvA N terminal domain C1C92_09825 PF07499 RuvA, C-terminal domain C1C92_09830 PF05491 RuvB C-terminal winged helix domain C1C92_09830 PF17864 RuvB AAA lid domain C1C92_09830 PF05496 Holliday junction DNA helicase RuvB P-loop domain C1C92_09840 PF01654 Cytochrome bd terminal oxidase subunit I C1C92_09845 PF02322 Cytochrome bd terminal oxidase subunit II C1C92_09850 PF08173 Membrane bound YbgT-like protein C1C92_09855 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) C1C92_09860 PF03061 Thioesterase superfamily C1C92_09865 PF01618 MotA/TolQ/ExbB proton channel family C1C92_09870 PF02472 Biopolymer transport protein ExbD/TolR C1C92_09880 PF07676 WD40-like Beta Propeller Repeat C1C92_09880 PF04052 TolB amino-terminal domain C1C92_09885 PF00691 OmpA family C1C92_09890 PF13174 Tetratricopeptide repeat C1C92_09890 PF16331 TolA binding protein trimerisation C1C92_09965 PF00672 HAMP domain C1C92_09965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_09970 PF02445 Quinolinate synthetase A protein C1C92_09975 PF01263 Aldose 1-epimerase C1C92_09980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C1C92_09980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C1C92_09985 PF02446 4-alpha-glucanotransferase C1C92_09990 PF00128 Alpha amylase, catalytic domain C1C92_09990 PF02806 Alpha amylase, C-terminal all-beta domain C1C92_09990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C1C92_09995 PF00128 Alpha amylase, catalytic domain C1C92_09995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C1C92_10000 PF01641 SelR domain C1C92_10015 PF00293 NUDIX domain C1C92_10020 PF00107 Zinc-binding dehydrogenase C1C92_10020 PF16884 N-terminal domain of oxidoreductase C1C92_10025 PF01047 MarR family C1C92_10040 PF01037 Lrp/AsnC ligand binding domain C1C92_10050 PF07690 Major Facilitator Superfamily C1C92_10070 PF00209 Sodium:neurotransmitter symporter family C1C92_10075 PF00209 Sodium:neurotransmitter symporter family C1C92_10090 PF00155 Aminotransferase class I and II C1C92_10090 PF00392 Bacterial regulatory proteins, gntR family C1C92_10105 PF01177 Asp/Glu/Hydantoin racemase C1C92_10115 PF00501 AMP-binding enzyme C1C92_10125 PF00583 Acetyltransferase (GNAT) family C1C92_10135 PF12592 Protein of unknown function (DUF3763) C1C92_10135 PF17868 AAA lid domain C1C92_10135 PF07728 AAA domain (dynein-related subfamily) C1C92_10140 PF05762 VWA domain containing CoxE-like protein C1C92_10145 PF08448 PAS fold C1C92_10145 PF00990 Diguanylate cyclase, GGDEF domain C1C92_10145 PF00563 EAL domain C1C92_10155 PF00009 Elongation factor Tu GTP binding domain C1C92_10155 PF03144 Elongation factor Tu domain 2 C1C92_10155 PF16658 Class II release factor RF3, C-terminal domain C1C92_10165 PF01758 Sodium Bile acid symporter family C1C92_10170 PF00583 Acetyltransferase (GNAT) family C1C92_10185 PF03466 LysR substrate binding domain C1C92_10185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_10190 PF04371 Porphyromonas-type peptidyl-arginine deiminase C1C92_10195 PF01425 Amidase C1C92_10230 PF02311 AraC-like ligand binding domain C1C92_10230 PF12833 Helix-turn-helix domain C1C92_10235 PF00111 2Fe-2S iron-sulfur cluster binding domain C1C92_10235 PF00970 Oxidoreductase FAD-binding domain C1C92_10235 PF00175 Oxidoreductase NAD-binding domain C1C92_10240 PF00271 Helicase conserved C-terminal domain C1C92_10240 PF00270 DEAD/DEAH box helicase C1C92_10245 PF00990 Diguanylate cyclase, GGDEF domain C1C92_10250 PF05643 Putative bacterial lipoprotein (DUF799) C1C92_10260 PF03783 Curli production assembly/transport component CsgG C1C92_10280 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase C1C92_10290 PF02687 FtsX-like permease family C1C92_10290 PF12704 MacB-like periplasmic core domain C1C92_10290 PF00005 ABC transporter C1C92_10295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_10300 PF00072 Response regulator receiver domain C1C92_10300 PF00486 Transcriptional regulatory protein, C terminal C1C92_10305 PF16527 Two-component sensor protein CpxA, periplasmic domain C1C92_10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_10305 PF00672 HAMP domain C1C92_10305 PF00512 His Kinase A (phospho-acceptor) domain C1C92_10325 PF00445 Ribonuclease T2 family C1C92_10330 PF03060 Nitronate monooxygenase C1C92_10360 PF00317 Ribonucleotide reductase, all-alpha domain C1C92_10360 PF02867 Ribonucleotide reductase, barrel domain C1C92_10360 PF08343 Ribonucleotide reductase N-terminal C1C92_10370 PF02562 PhoH-like protein C1C92_10370 PF13638 PIN domain C1C92_10375 PF00005 ABC transporter C1C92_10380 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_10400 PF00694 Aconitase C-terminal domain C1C92_10405 PF00330 Aconitase family (aconitate hydratase) C1C92_10410 PF00180 Isocitrate/isopropylmalate dehydrogenase C1C92_10415 PF08502 LeuA allosteric (dimerisation) domain C1C92_10415 PF00682 HMGL-like C1C92_10425 PF01569 PAP2 superfamily C1C92_10440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C1C92_10440 PF00205 Thiamine pyrophosphate enzyme, central domain C1C92_10440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C1C92_10445 PF10369 Small subunit of acetolactate synthase C1C92_10450 PF01515 Phosphate acetyl/butaryl transferase C1C92_10450 PF07085 DRTGG domain C1C92_10455 PF00871 Acetokinase family C1C92_10460 PF04217 Protein of unknown function, DUF412 C1C92_10465 PF03887 YfbU domain C1C92_10470 PF00578 AhpC/TSA family C1C92_10475 PF01842 ACT domain C1C92_10480 PF00701 Dihydrodipicolinate synthetase family C1C92_10485 PF06804 NlpB/DapX lipoprotein C1C92_10490 PF01259 SAICAR synthetase C1C92_10500 PF03466 LysR substrate binding domain C1C92_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_10505 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) C1C92_10525 PF00989 PAS fold C1C92_10525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_10525 PF00512 His Kinase A (phospho-acceptor) domain C1C92_10525 PF18415 Histidine kinase receptor ArcB trans-membrane domain C1C92_10525 PF00072 Response regulator receiver domain C1C92_10525 PF01627 Hpt domain C1C92_10530 PF01966 HD domain C1C92_10545 PF03707 Bacterial signalling protein N terminal repeat C1C92_10545 PF00990 Diguanylate cyclase, GGDEF domain C1C92_10545 PF00563 EAL domain C1C92_10550 PF00672 HAMP domain C1C92_10550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_10555 PF02357 Transcription termination factor nusG C1C92_10560 PF03180 NLPA lipoprotein C1C92_10565 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_10570 PF00005 ABC transporter C1C92_10570 PF09383 NIL domain C1C92_10580 PF00480 ROK family C1C92_10585 PF08331 Domain of unknown function (DUF1730) C1C92_10590 PF03853 YjeF-related protein N-terminus C1C92_10590 PF01256 Carbohydrate kinase C1C92_10595 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C1C92_10600 PF01520 N-acetylmuramoyl-L-alanine amidase C1C92_10605 PF08676 MutL C terminal dimerisation domain C1C92_10605 PF01119 DNA mismatch repair protein, C-terminal domain C1C92_10615 PF17209 Hfq protein C1C92_10620 PF16360 GTP-binding GTPase Middle Region C1C92_10620 PF13167 GTP-binding GTPase N-terminal C1C92_10620 PF01926 50S ribosome-binding GTPase C1C92_10625 PF12221 Bacterial membrane protein N terminal C1C92_10625 PF01145 SPFH domain / Band 7 family C1C92_10630 PF01145 SPFH domain / Band 7 family C1C92_10635 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) C1C92_10640 PF00348 Polyprenyl synthetase C1C92_10645 PF00829 Ribosomal prokaryotic L21 protein C1C92_10650 PF01016 Ribosomal L27 protein C1C92_10655 PF01926 50S ribosome-binding GTPase C1C92_10655 PF01018 GTP1/OBG C1C92_10670 PF00296 Luciferase-like monooxygenase C1C92_10680 PF00149 Calcineurin-like phosphoesterase C1C92_10685 PF04379 ApaG domain C1C92_10690 PF00398 Ribosomal RNA adenine dimethylase C1C92_10700 PF09312 SurA N-terminal domain C1C92_10700 PF00639 PPIC-type PPIASE domain C1C92_10705 PF04453 LPS transport system D C1C92_10705 PF03968 OstA-like protein C1C92_10710 PF01636 Phosphotransferase enzyme family C1C92_10715 PF00483 Nucleotidyl transferase C1C92_10720 PF00226 DnaJ domain C1C92_10720 PF05099 Tellurite resistance protein TerB C1C92_10725 PF00860 Permease family C1C92_10735 PF12848 ABC transporter C1C92_10735 PF00005 ABC transporter C1C92_10740 PF00589 Phage integrase family C1C92_10740 PF12167 Arm DNA-binding domain C1C92_10750 PF00436 Single-strand binding protein family C1C92_10790 PF01381 Helix-turn-helix C1C92_10790 PF00717 Peptidase S24-like C1C92_10895 PF13438 Domain of unknown function (DUF4113) C1C92_10895 PF00817 impB/mucB/samB family C1C92_10895 PF11799 impB/mucB/samB family C-terminal domain C1C92_10895 PF11798 IMS family HHH motif C1C92_10900 PF00717 Peptidase S24-like C1C92_10905 PF02586 SOS response associated peptidase (SRAP) C1C92_10950 PF03354 Phage Terminase C1C92_10965 PF01343 Peptidase family S49 C1C92_11070 PF01464 Transglycosylase SLT domain C1C92_11075 PF00535 Glycosyl transferase family 2 C1C92_11085 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase C1C92_11090 PF01370 NAD dependent epimerase/dehydratase family C1C92_11095 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C1C92_11095 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C1C92_11095 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C1C92_11105 PF00005 ABC transporter C1C92_11110 PF01032 FecCD transport family C1C92_11120 PF06228 Haem utilisation ChuX/HutX C1C92_11125 PF01243 Pyridoxamine 5'-phosphate oxidase C1C92_11145 PF00593 TonB dependent receptor C1C92_11145 PF07715 TonB-dependent Receptor Plug Domain C1C92_11150 PF12832 MFS_1 like family C1C92_11155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_11155 PF00989 PAS fold C1C92_11155 PF00512 His Kinase A (phospho-acceptor) domain C1C92_11160 PF00704 Glycosyl hydrolases family 18 C1C92_11160 PF08329 Chitinase A, N-terminal domain C1C92_11165 PF13847 Methyltransferase domain C1C92_11170 PF13545 Crp-like helix-turn-helix domain C1C92_11170 PF00027 Cyclic nucleotide-binding domain C1C92_11175 PF02566 OsmC-like protein C1C92_11190 PF00485 Phosphoribulokinase / Uridine kinase family C1C92_11195 PF06794 Uncharacterised protein family (UPF0270) C1C92_11200 PF00360 Phytochrome region C1C92_11200 PF01590 GAF domain C1C92_11200 PF00563 EAL domain C1C92_11200 PF00990 Diguanylate cyclase, GGDEF domain C1C92_11205 PF00561 alpha/beta hydrolase fold C1C92_11210 PF01584 CheW-like domain C1C92_11210 PF00072 Response regulator receiver domain C1C92_11220 PF09526 Probable metal-binding protein (DUF2387) C1C92_11225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C1C92_11230 PF04102 SlyX C1C92_11240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C1C92_11240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C1C92_11245 PF00158 Sigma-54 interaction domain C1C92_11245 PF02954 Bacterial regulatory protein, Fis family C1C92_11245 PF00072 Response regulator receiver domain C1C92_11265 PF00149 Calcineurin-like phosphoesterase C1C92_11265 PF02872 5'-nucleotidase, C-terminal domain C1C92_11275 PF03796 DnaB-like helicase C terminal domain C1C92_11275 PF00772 DnaB-like helicase N terminal domain C1C92_11280 PF01168 Alanine racemase, N-terminal domain C1C92_11280 PF00842 Alanine racemase, C-terminal domain C1C92_11285 PF00171 Aldehyde dehydrogenase family C1C92_11285 PF01619 Proline dehydrogenase C1C92_11285 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C1C92_11285 PF14850 DNA-binding domain of Proline dehydrogenase C1C92_11295 PF10415 Fumarase C C-terminus C1C92_11295 PF00206 Lyase C1C92_11305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_11305 PF00529 HlyD membrane-fusion protein of T1SS C1C92_11310 PF07690 Major Facilitator Superfamily C1C92_11315 PF03575 Peptidase family S51 C1C92_11320 PF00196 Bacterial regulatory proteins, luxR family C1C92_11320 PF00072 Response regulator receiver domain C1C92_11325 PF00989 PAS fold C1C92_11325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_11325 PF00512 His Kinase A (phospho-acceptor) domain C1C92_11330 PF13247 4Fe-4S dicluster domain C1C92_11335 PF03916 Polysulphide reductase, NrfD C1C92_11340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C1C92_11340 PF00384 Molybdopterin oxidoreductase C1C92_11340 PF01568 Molydopterin dinucleotide binding domain C1C92_11380 PF03466 LysR substrate binding domain C1C92_11380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_11385 PF01810 LysE type translocator C1C92_11390 PF12392 Collagenase C1C92_11390 PF01136 Peptidase family U32 C1C92_11400 PF06906 Protein of unknown function (DUF1272) C1C92_11410 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C1C92_11410 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C1C92_11415 PF02805 Metal binding domain of Ada C1C92_11415 PF00730 HhH-GPD superfamily base excision DNA repair protein C1C92_11415 PF06029 AlkA N-terminal domain C1C92_11415 PF12833 Helix-turn-helix domain C1C92_11420 PF02074 Carboxypeptidase Taq (M32) metallopeptidase C1C92_11445 PF00106 short chain dehydrogenase C1C92_11450 PF03573 outer membrane porin, OprD family C1C92_11455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_11465 PF02447 GntP family permease C1C92_11470 PF01370 NAD dependent epimerase/dehydratase family C1C92_11475 PF01261 Xylose isomerase-like TIM barrel C1C92_11480 PF00596 Class II Aldolase and Adducin N-terminal domain C1C92_11485 PF17042 Nucleotide-binding C-terminal domain C1C92_11485 PF07005 Sugar-binding N-terminal domain C1C92_11490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C1C92_11490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C1C92_11495 PF08220 DeoR-like helix-turn-helix domain C1C92_11495 PF00455 DeoR C terminal sensor domain C1C92_11505 PF07995 Glucose / Sorbosone dehydrogenase C1C92_11540 PF10124 Mu-like prophage major head subunit gpT C1C92_11570 PF00800 Prephenate dehydratase C1C92_11570 PF01817 Chorismate mutase type II C1C92_11595 PF08349 Protein of unknown function (DUF1722) C1C92_11600 PF13411 MerR HTH family regulatory protein C1C92_11605 PF00875 DNA photolyase C1C92_11605 PF03441 FAD binding domain of DNA photolyase C1C92_11615 PF00106 short chain dehydrogenase C1C92_11655 PF00210 Ferritin-like domain C1C92_11660 PF03063 Prismane/CO dehydrogenase family C1C92_11665 PF00111 2Fe-2S iron-sulfur cluster binding domain C1C92_11665 PF00175 Oxidoreductase NAD-binding domain C1C92_11665 PF00970 Oxidoreductase FAD-binding domain C1C92_11670 PF16363 GDP-mannose 4,6 dehydratase C1C92_11690 PF00873 AcrB/AcrD/AcrF family C1C92_11695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_11695 PF00529 HlyD membrane-fusion protein of T1SS C1C92_11700 PF00486 Transcriptional regulatory protein, C terminal C1C92_11700 PF00072 Response regulator receiver domain C1C92_11705 PF00672 HAMP domain C1C92_11705 PF00512 His Kinase A (phospho-acceptor) domain C1C92_11705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_11715 PF01740 STAS domain C1C92_11715 PF00916 Sulfate permease family C1C92_11720 PF01965 DJ-1/PfpI family C1C92_11725 PF02558 Ketopantoate reductase PanE/ApbA C1C92_11725 PF08546 Ketopantoate reductase PanE/ApbA C terminal C1C92_11730 PF04461 Protein of unknown function (DUF520) C1C92_11735 PF03502 Nucleoside-specific channel-forming protein, Tsx C1C92_11740 PF07690 Major Facilitator Superfamily C1C92_11750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C1C92_11760 PF05175 Methyltransferase small domain C1C92_11765 PF01722 BolA-like protein C1C92_11770 PF11973 NQRA C-terminal domain C1C92_11770 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) C1C92_11775 PF03116 NQR2, RnfD, RnfE family C1C92_11780 PF04205 FMN-binding domain C1C92_11785 PF02508 Rnf-Nqr subunit, membrane protein C1C92_11790 PF02508 Rnf-Nqr subunit, membrane protein C1C92_11795 PF00111 2Fe-2S iron-sulfur cluster binding domain C1C92_11795 PF00970 Oxidoreductase FAD-binding domain C1C92_11795 PF00175 Oxidoreductase NAD-binding domain C1C92_11800 PF02424 ApbE family C1C92_11815 PF00817 impB/mucB/samB family C1C92_11815 PF11799 impB/mucB/samB family C-terminal domain C1C92_11815 PF11798 IMS family HHH motif C1C92_11820 PF00672 HAMP domain C1C92_11820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_11825 PF03466 LysR substrate binding domain C1C92_11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_11840 PF01728 FtsJ-like methyltransferase C1C92_11840 PF18125 RlmM ferredoxin-like domain C1C92_11850 PF18324 Hypothetical protein TT1725 C1C92_11850 PF00180 Isocitrate/isopropylmalate dehydrogenase C1C92_11855 PF01367 5'-3' exonuclease, C-terminal SAM fold C1C92_11855 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C1C92_11860 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases C1C92_11860 PF11892 Domain of unknown function (DUF3412) C1C92_11860 PF03641 Possible lysine decarboxylase C1C92_11865 PF00990 Diguanylate cyclase, GGDEF domain C1C92_11875 PF14489 QueF-like protein C1C92_11875 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term C1C92_11880 PF07348 Syd protein (SUKH-2) C1C92_11885 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) C1C92_11910 PF04287 tRNA pseudouridine synthase C C1C92_11915 PF00849 RNA pseudouridylate synthase C1C92_11920 PF00258 Flavodoxin C1C92_11925 PF02264 LamB porin C1C92_11930 PF07148 Maltose operon periplasmic protein precursor (MalM) C1C92_11935 PF02378 Phosphotransferase system, EIIC C1C92_11935 PF00367 phosphotransferase system, EIIB C1C92_11940 PF11944 Protein of unknown function (DUF3461) C1C92_11945 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C1C92_11945 PF14602 Hexapeptide repeat of succinyl-transferase C1C92_11945 PF00132 Bacterial transferase hexapeptide (six repeats) C1C92_11950 PF08335 GlnD PII-uridylyltransferase C1C92_11950 PF01909 Nucleotidyltransferase domain C1C92_11950 PF01842 ACT domain C1C92_11950 PF01966 HD domain C1C92_11955 PF00557 Metallopeptidase family M24 C1C92_11960 PF00318 Ribosomal protein S2 C1C92_11965 PF00889 Elongation factor TS C1C92_11970 PF00696 Amino acid kinase family C1C92_11975 PF01765 Ribosome recycling factor C1C92_11980 PF01255 Putative undecaprenyl diphosphate synthase C1C92_11990 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C1C92_11990 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C1C92_11990 PF13288 DXP reductoisomerase C-terminal domain C1C92_11995 PF17820 PDZ domain C1C92_11995 PF02163 Peptidase family M50 C1C92_12000 PF07244 Surface antigen variable number repeat C1C92_12000 PF01103 Surface antigen C1C92_12005 PF03938 Outer membrane protein (OmpH-like) C1C92_12010 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C1C92_12010 PF00132 Bacterial transferase hexapeptide (six repeats) C1C92_12015 PF07977 FabA-like domain C1C92_12020 PF00132 Bacterial transferase hexapeptide (six repeats) C1C92_12020 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C1C92_12025 PF02684 Lipid-A-disaccharide synthetase C1C92_12030 PF01351 Ribonuclease HII C1C92_12035 PF02811 PHP domain C1C92_12035 PF14579 Helix-hairpin-helix motif C1C92_12035 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C1C92_12035 PF07733 Bacterial DNA polymerase III alpha NTPase domain C1C92_12035 PF01336 OB-fold nucleic acid binding domain C1C92_12040 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C1C92_12050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_12050 PF03466 LysR substrate binding domain C1C92_12060 PF13520 Amino acid permease C1C92_12070 PF16326 ABC transporter C-terminal domain C1C92_12070 PF00005 ABC transporter C1C92_12070 PF12848 ABC transporter C1C92_12080 PF01431 Peptidase family M13 C1C92_12080 PF05649 Peptidase family M13 C1C92_12085 PF11734 TilS substrate C-terminal domain C1C92_12085 PF09179 TilS substrate binding domain C1C92_12085 PF01171 PP-loop family C1C92_12090 PF00990 Diguanylate cyclase, GGDEF domain C1C92_12095 PF00999 Sodium/hydrogen exchanger family C1C92_12095 PF02080 TrkA-C domain C1C92_12095 PF02254 TrkA-N domain C1C92_12125 PF00196 Bacterial regulatory proteins, luxR family C1C92_12125 PF00072 Response regulator receiver domain C1C92_12135 PF00128 Alpha amylase, catalytic domain C1C92_12150 PF00535 Glycosyl transferase family 2 C1C92_12165 PF01471 Putative peptidoglycan binding domain C1C92_12165 PF03734 L,D-transpeptidase catalytic domain C1C92_12170 PF05951 Bacterial protein of unknown function (DUF882) C1C92_12180 PF03458 UPF0126 domain C1C92_12195 PF04354 ZipA, C-terminal FtsZ-binding domain C1C92_12200 PF01653 NAD-dependent DNA ligase adenylation domain C1C92_12200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C1C92_12200 PF03120 NAD-dependent DNA ligase OB-fold domain C1C92_12200 PF12826 Helix-hairpin-helix motif C1C92_12200 PF00533 BRCA1 C Terminus (BRCT) domain C1C92_12210 PF13597 Anaerobic ribonucleoside-triphosphate reductase C1C92_12210 PF03477 ATP cone domain C1C92_12220 PF01679 Proteolipid membrane potential modulator C1C92_12240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_12240 PF00529 HlyD membrane-fusion protein of T1SS C1C92_12245 PF01047 MarR family C1C92_12250 PF00989 PAS fold C1C92_12250 PF17203 Single cache domain 3 C1C92_12250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_12250 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C1C92_12255 PF12431 Transcriptional regulator C1C92_12255 PF00072 Response regulator receiver domain C1C92_12265 PF00248 Aldo/keto reductase family C1C92_12275 PF00892 EamA-like transporter family C1C92_12285 PF00171 Aldehyde dehydrogenase family C1C92_12290 PF01590 GAF domain C1C92_12290 PF00158 Sigma-54 interaction domain C1C92_12290 PF02954 Bacterial regulatory protein, Fis family C1C92_12295 PF00990 Diguanylate cyclase, GGDEF domain C1C92_12295 PF07694 5TMR of 5TMR-LYT C1C92_12300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C1C92_12305 PF00486 Transcriptional regulatory protein, C terminal C1C92_12305 PF00072 Response regulator receiver domain C1C92_12310 PF11808 Phosphate regulon sensor protein PhoR C1C92_12310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_12310 PF00512 His Kinase A (phospho-acceptor) domain C1C92_12310 PF00989 PAS fold C1C92_12315 PF12849 PBP superfamily domain C1C92_12320 PF01435 Peptidase family M48 C1C92_12330 PF00480 ROK family C1C92_12340 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C1C92_12340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C1C92_12345 PF00005 ABC transporter C1C92_12350 PF00795 Carbon-nitrogen hydrolase C1C92_12360 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_12365 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_12370 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_12375 PF00005 ABC transporter C1C92_12385 PF00293 NUDIX domain C1C92_12390 PF08534 Redoxin C1C92_12395 PF01699 Sodium/calcium exchanger protein C1C92_12400 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C1C92_12400 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C1C92_12405 PF01235 Sodium:alanine symporter family C1C92_12415 PF00860 Permease family C1C92_12420 PF00990 Diguanylate cyclase, GGDEF domain C1C92_12420 PF00072 Response regulator receiver domain C1C92_12425 PF10692 Protein of unknown function (DUF2498) C1C92_12430 PF01554 MatE C1C92_12435 PF12833 Helix-turn-helix domain C1C92_12440 PF03949 Malic enzyme, NAD binding domain C1C92_12440 PF00390 Malic enzyme, N-terminal domain C1C92_12445 PF00691 OmpA family C1C92_12445 PF01389 OmpA-like transmembrane domain C1C92_12450 PF00691 OmpA family C1C92_12450 PF01389 OmpA-like transmembrane domain C1C92_12455 PF00691 OmpA family C1C92_12455 PF01389 OmpA-like transmembrane domain C1C92_12470 PF00209 Sodium:neurotransmitter symporter family C1C92_12475 PF01734 Patatin-like phospholipase C1C92_12480 PF17158 Membrane-associated sensor, integral membrane domain C1C92_12480 PF00990 Diguanylate cyclase, GGDEF domain C1C92_12490 PF00873 AcrB/AcrD/AcrF family C1C92_12495 PF08497 Radical SAM N-terminal C1C92_12495 PF04055 Radical SAM superfamily C1C92_12495 PF11842 Domain of unknown function (DUF3362) C1C92_12500 PF00400 WD domain, G-beta repeat C1C92_12500 PF00931 NB-ARC domain C1C92_12520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C1C92_12525 PF02075 Crossover junction endodeoxyribonuclease RuvC C1C92_12530 PF00230 Major intrinsic protein C1C92_12560 PF01551 Peptidase family M23 C1C92_12560 PF01464 Transglycosylase SLT domain C1C92_12560 PF10145 Phage-related minor tail protein C1C92_12575 PF13091 PLD-like domain C1C92_12575 PF13396 Phospholipase_D-nuclease N-terminal C1C92_12585 PF00551 Formyl transferase C1C92_12585 PF01842 ACT domain C1C92_12590 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C1C92_12600 PF00085 Thioredoxin C1C92_12605 PF01648 4'-phosphopantetheinyl transferase superfamily C1C92_12610 PF00877 NlpC/P60 family C1C92_12615 PF05971 RNA methyltransferase C1C92_12630 PF03734 L,D-transpeptidase catalytic domain C1C92_12630 PF01476 LysM domain C1C92_12630 PF17969 L,D-transpeptidase C-terminal domain C1C92_12645 PF00589 Phage integrase family C1C92_12645 PF13495 Phage integrase, N-terminal SAM-like domain C1C92_12650 PF00809 Pterin binding enzyme C1C92_12670 PF13610 DDE domain C1C92_12685 PF02534 Type IV secretory system Conjugative DNA transfer C1C92_12690 PF03466 LysR substrate binding domain C1C92_12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_12695 PF07690 Major Facilitator Superfamily C1C92_12705 PF01526 Tn3 transposase DDE domain C1C92_12705 PF13700 Domain of unknown function (DUF4158) C1C92_12710 PF00872 Transposase, Mutator family C1C92_12720 PF02796 Helix-turn-helix domain of resolvase C1C92_12720 PF00239 Resolvase, N terminal domain C1C92_12725 PF01636 Phosphotransferase enzyme family C1C92_12730 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase C1C92_12760 PF13610 DDE domain C1C92_12775 PF09618 CRISPR-associated protein (Cas_Csy4) C1C92_12780 PF09615 CRISPR-associated protein (Cas_Csy3) C1C92_12785 PF09614 CRISPR-associated protein (Cas_Csy2) C1C92_12790 PF09611 CRISPR-associated protein (Cas_Csy1) C1C92_12800 PF01867 CRISPR associated protein Cas1 C1C92_12835 PF04002 RadC-like JAB domain C1C92_12880 PF05930 Prophage CP4-57 regulatory protein (AlpA) C1C92_12885 PF00816 H-NS histone family C1C92_12895 PF13356 Arm DNA-binding domain C1C92_12895 PF00589 Phage integrase family C1C92_12900 PF00512 His Kinase A (phospho-acceptor) domain C1C92_12900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_12900 PF09308 LuxQ, periplasmic C1C92_12900 PF00072 Response regulator receiver domain C1C92_12920 PF10725 Protein of unknown function (DUF2517) C1C92_12925 PF00989 PAS fold C1C92_12925 PF01627 Hpt domain C1C92_12925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_12925 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_12925 PF00072 Response regulator receiver domain C1C92_12925 PF00512 His Kinase A (phospho-acceptor) domain C1C92_12930 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C1C92_12935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C1C92_12935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C1C92_12940 PF02690 Na+/Pi-cotransporter C1C92_12950 PF13520 Amino acid permease C1C92_12955 PF00324 Amino acid permease C1C92_12960 PF00202 Aminotransferase class-III C1C92_12970 PF00171 Aldehyde dehydrogenase family C1C92_12975 PF01381 Helix-turn-helix C1C92_12975 PF07883 Cupin domain C1C92_12980 PF01266 FAD dependent oxidoreductase C1C92_13010 PF00072 Response regulator receiver domain C1C92_13010 PF02954 Bacterial regulatory protein, Fis family C1C92_13010 PF00158 Sigma-54 interaction domain C1C92_13015 PF02254 TrkA-N domain C1C92_13015 PF00999 Sodium/hydrogen exchanger family C1C92_13030 PF04381 Putative exonuclease, RdgC C1C92_13040 PF00149 Calcineurin-like phosphoesterase C1C92_13040 PF12320 Type 5 capsule protein repressor C-terminal domain C1C92_13050 PF01292 Prokaryotic cytochrome b561 C1C92_13055 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C1C92_13060 PF02896 PEP-utilising enzyme, TIM barrel domain C1C92_13060 PF00391 PEP-utilising enzyme, mobile domain C1C92_13060 PF05524 PEP-utilising enzyme, N-terminal C1C92_13065 PF00381 PTS HPr component phosphorylation site C1C92_13070 PF00291 Pyridoxal-phosphate dependent enzyme C1C92_13075 PF17862 AAA+ lid domain C1C92_13075 PF06480 FtsH Extracellular C1C92_13075 PF01434 Peptidase family M41 C1C92_13075 PF00004 ATPase family associated with various cellular activities (AAA) C1C92_13085 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C1C92_13085 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C1C92_13090 PF01980 tRNA-methyltransferase O C1C92_13090 PF18389 TrmO C-terminal domain C1C92_13110 PF00005 ABC transporter C1C92_13110 PF00664 ABC transporter transmembrane region C1C92_13115 PF00664 ABC transporter transmembrane region C1C92_13115 PF00005 ABC transporter C1C92_13130 PF00072 Response regulator receiver domain C1C92_13130 PF00486 Transcriptional regulatory protein, C terminal C1C92_13140 PF03737 Aldolase/RraA C1C92_13155 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) C1C92_13160 PF00588 SpoU rRNA Methylase family C1C92_13170 PF00696 Amino acid kinase family C1C92_13170 PF03447 Homoserine dehydrogenase, NAD binding domain C1C92_13170 PF01842 ACT domain C1C92_13170 PF00742 Homoserine dehydrogenase C1C92_13170 PF13840 ACT domain C1C92_13175 PF00288 GHMP kinases N terminal domain C1C92_13175 PF08544 GHMP kinases C terminal C1C92_13180 PF14821 Threonine synthase N terminus C1C92_13180 PF00291 Pyridoxal-phosphate dependent enzyme C1C92_13200 PF01797 Transposase IS200 like C1C92_13210 PF02028 BCCT, betaine/carnitine/choline family transporter C1C92_13220 PF05114 Protein of unknown function (DUF692) C1C92_13240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_13240 PF08447 PAS fold C1C92_13240 PF13426 PAS domain C1C92_13255 PF04632 Fusaric acid resistance protein family C1C92_13265 PF12804 MobA-like NTP transferase domain C1C92_13280 PF00860 Permease family C1C92_13290 PF10282 Lactonase, 7-bladed beta-propeller C1C92_13295 PF01810 LysE type translocator C1C92_13300 PF12794 Mechanosensitive ion channel inner membrane domain 1 C1C92_13300 PF12795 Mechanosensitive ion channel porin domain C1C92_13300 PF00924 Mechanosensitive ion channel C1C92_13305 PF00224 Pyruvate kinase, barrel domain C1C92_13305 PF02887 Pyruvate kinase, alpha/beta domain C1C92_13310 PF08007 Cupin superfamily protein C1C92_13315 PF00206 Lyase C1C92_13315 PF08328 Adenylosuccinate lyase C-terminal C1C92_13320 PF04356 Protein of unknown function (DUF489) C1C92_13330 PF00293 NUDIX domain C1C92_13335 PF00849 RNA pseudouridylate synthase C1C92_13340 PF00583 Acetyltransferase (GNAT) family C1C92_13370 PF00180 Isocitrate/isopropylmalate dehydrogenase C1C92_13380 PF00291 Pyridoxal-phosphate dependent enzyme C1C92_13385 PF03466 LysR substrate binding domain C1C92_13385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_13390 PF00816 H-NS histone family C1C92_13395 PF00793 DAHP synthetase I family C1C92_13400 PF08021 Siderophore-interacting FAD-binding domain C1C92_13400 PF04954 Siderophore-interacting protein C1C92_13405 PF02321 Outer membrane efflux protein C1C92_13410 PF02687 FtsX-like permease family C1C92_13410 PF12704 MacB-like periplasmic core domain C1C92_13410 PF00005 ABC transporter C1C92_13415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_13425 PF02463 RecF/RecN/SMC N terminal domain C1C92_13435 PF01513 ATP-NAD kinase C1C92_13440 PF01025 GrpE C1C92_13445 PF00012 Hsp70 protein C1C92_13450 PF00226 DnaJ domain C1C92_13450 PF00684 DnaJ central domain C1C92_13450 PF01556 DnaJ C terminal domain C1C92_13455 PF02264 LamB porin C1C92_13455 PF11471 Maltoporin periplasmic N-terminal extension C1C92_13460 PF00294 pfkB family carbohydrate kinase C1C92_13465 PF00367 phosphotransferase system, EIIB C1C92_13465 PF02378 Phosphotransferase system, EIIC C1C92_13470 PF00251 Glycosyl hydrolases family 32 N-terminal domain C1C92_13470 PF08244 Glycosyl hydrolases family 32 C terminal C1C92_13475 PF00356 Bacterial regulatory proteins, lacI family C1C92_13475 PF13407 Periplasmic binding protein domain C1C92_13480 PF02308 MgtC family C1C92_13490 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_13500 PF01022 Bacterial regulatory protein, arsR family C1C92_13505 PF04143 Sulphur transport C1C92_13520 PF00873 AcrB/AcrD/AcrF family C1C92_13525 PF03707 Bacterial signalling protein N terminal repeat C1C92_13525 PF00563 EAL domain C1C92_13525 PF00990 Diguanylate cyclase, GGDEF domain C1C92_13530 PF03099 Biotin/lipoate A/B protein ligase family C1C92_13530 PF10437 Bacterial lipoate protein ligase C-terminus C1C92_13545 PF00873 AcrB/AcrD/AcrF family C1C92_13550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_13550 PF00529 HlyD membrane-fusion protein of T1SS C1C92_13560 PF03372 Endonuclease/Exonuclease/phosphatase family C1C92_13570 PF00072 Response regulator receiver domain C1C92_13575 PF00011 Hsp20/alpha crystallin family C1C92_13580 PF02424 ApbE family C1C92_13585 PF00127 Copper binding proteins, plastocyanin/azurin family C1C92_13600 PF01047 MarR family C1C92_13610 PF01156 Inosine-uridine preferring nucleoside hydrolase C1C92_13620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_13620 PF03466 LysR substrate binding domain C1C92_13625 PF02627 Carboxymuconolactone decarboxylase family C1C92_13630 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C1C92_13630 PF06481 COX Aromatic Rich Motif C1C92_13640 PF00510 Cytochrome c oxidase subunit III C1C92_13645 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C1C92_13650 PF01040 UbiA prenyltransferase family C1C92_13660 PF07690 Major Facilitator Superfamily C1C92_13665 PF07237 Protein of unknown function (DUF1428) C1C92_13675 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_13680 PF00005 ABC transporter C1C92_13685 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C1C92_13695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_13695 PF03466 LysR substrate binding domain C1C92_13720 PF04307 LexA-binding, inner membrane-associated putative hydrolase C1C92_13745 PF00291 Pyridoxal-phosphate dependent enzyme C1C92_13750 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C1C92_13750 PF00218 Indole-3-glycerol phosphate synthase C1C92_13755 PF00591 Glycosyl transferase family, a/b domain C1C92_13755 PF02885 Glycosyl transferase family, helical bundle domain C1C92_13760 PF02885 Glycosyl transferase family, helical bundle domain C1C92_13760 PF00117 Glutamine amidotransferase class-I C1C92_13760 PF00591 Glycosyl transferase family, a/b domain C1C92_13765 PF00425 chorismate binding enzyme C1C92_13765 PF04715 Anthranilate synthase component I, N terminal region C1C92_13770 PF02811 PHP domain C1C92_13775 PF01300 Telomere recombination C1C92_13780 PF02616 Segregation and condensation protein ScpA C1C92_13785 PF04079 Segregation and condensation complex subunit ScpB C1C92_13790 PF00849 RNA pseudouridylate synthase C1C92_13790 PF01479 S4 domain C1C92_13815 PF08361 MAATS-type transcriptional repressor, C-terminal region C1C92_13815 PF00440 Bacterial regulatory proteins, tetR family C1C92_13820 PF00529 HlyD membrane-fusion protein of T1SS C1C92_13820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_13825 PF00873 AcrB/AcrD/AcrF family C1C92_13830 PF02321 Outer membrane efflux protein C1C92_13840 PF05598 Transposase domain (DUF772) C1C92_13840 PF01609 Transposase DDE domain C1C92_13890 PF04002 RadC-like JAB domain C1C92_13905 PF01717 Cobalamin-independent synthase, Catalytic domain C1C92_13920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_13920 PF03466 LysR substrate binding domain C1C92_13925 PF00665 Integrase core domain C1C92_13930 PF01695 IstB-like ATP binding protein C1C92_13970 PF00440 Bacterial regulatory proteins, tetR family C1C92_13975 PF02770 Acyl-CoA dehydrogenase, middle domain C1C92_13975 PF09317 Domain of unknown function (DUF1974) C1C92_13975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C1C92_13975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C1C92_13980 PF00873 AcrB/AcrD/AcrF family C1C92_13990 PF02887 Pyruvate kinase, alpha/beta domain C1C92_13990 PF00224 Pyruvate kinase, barrel domain C1C92_13995 PF01380 SIS domain C1C92_13995 PF01418 Helix-turn-helix domain, rpiR family C1C92_14000 PF02685 Glucokinase C1C92_14005 PF08918 PhoQ Sensor C1C92_14005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_14010 PF00072 Response regulator receiver domain C1C92_14010 PF00486 Transcriptional regulatory protein, C terminal C1C92_14015 PF16363 GDP-mannose 4,6 dehydratase C1C92_14020 PF04321 RmlD substrate binding domain C1C92_14025 PF00483 Nucleotidyl transferase C1C92_14030 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase C1C92_14035 PF01061 ABC-2 type transporter C1C92_14040 PF00005 ABC transporter C1C92_14060 PF01757 Acyltransferase family C1C92_14070 PF01370 NAD dependent epimerase/dehydratase family C1C92_14075 PF00953 Glycosyl transferase family 4 C1C92_14080 PF02719 Polysaccharide biosynthesis protein C1C92_14085 PF00953 Glycosyl transferase family 4 C1C92_14095 PF01943 Polysaccharide biosynthesis protein C1C92_14095 PF14667 Polysaccharide biosynthesis C-terminal domain C1C92_14100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C1C92_14100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C1C92_14110 PF00535 Glycosyl transferase family 2 C1C92_14125 PF09318 Glycosyl transferase 1 domain A C1C92_14125 PF00534 Glycosyl transferases group 1 C1C92_14130 PF01501 Glycosyl transferase family 8 C1C92_14130 PF00535 Glycosyl transferase family 2 C1C92_14135 PF00535 Glycosyl transferase family 2 C1C92_14140 PF00534 Glycosyl transferases group 1 C1C92_14140 PF09318 Glycosyl transferase 1 domain A C1C92_14145 PF10531 SLBB domain C1C92_14145 PF02563 Polysaccharide biosynthesis/export protein C1C92_14145 PF18412 Outer-membrane lipoprotein Wza C-terminal domain C1C92_14150 PF01451 Low molecular weight phosphotyrosine protein phosphatase C1C92_14155 PF02706 Chain length determinant protein C1C92_14155 PF13807 G-rich domain on putative tyrosine kinase C1C92_14155 PF13614 AAA domain C1C92_14170 PF06251 Capsule biosynthesis GfcC C1C92_14175 PF06082 Exopolysaccharide biosynthesis protein YbjH C1C92_14185 PF04337 Protein of unknown function, DUF480 C1C92_14195 PF05472 DNA replication terminus site-binding protein (Ter protein) C1C92_14205 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family C1C92_14210 PF00676 Dehydrogenase E1 component C1C92_14215 PF02779 Transketolase, pyrimidine binding domain C1C92_14215 PF02780 Transketolase, C-terminal domain C1C92_14220 PF02817 e3 binding domain C1C92_14220 PF00364 Biotin-requiring enzyme C1C92_14220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C1C92_14225 PF00313 'Cold-shock' DNA-binding domain C1C92_14250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_14255 PF00892 EamA-like transporter family C1C92_14265 PF12323 Helix-turn-helix domain C1C92_14265 PF01385 Probable transposase C1C92_14265 PF07282 Putative transposase DNA-binding domain C1C92_14270 PF01966 HD domain C1C92_14275 PF01479 S4 domain C1C92_14275 PF00849 RNA pseudouridylate synthase C1C92_14285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_14295 PF12323 Helix-turn-helix domain C1C92_14295 PF01385 Probable transposase C1C92_14295 PF07282 Putative transposase DNA-binding domain C1C92_14300 PF12850 Calcineurin-like phosphoesterase superfamily domain C1C92_14315 PF13144 Chaperone for flagella basal body P-ring formation C1C92_14320 PF00072 Response regulator receiver domain C1C92_14320 PF01584 CheW-like domain C1C92_14325 PF01739 CheR methyltransferase, SAM binding domain C1C92_14325 PF03705 CheR methyltransferase, all-alpha domain C1C92_14330 PF00460 Flagella basal body rod protein C1C92_14335 PF00460 Flagella basal body rod protein C1C92_14335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C1C92_14345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C1C92_14345 PF00460 Flagella basal body rod protein C1C92_14350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C1C92_14350 PF00460 Flagella basal body rod protein C1C92_14355 PF00460 Flagella basal body rod protein C1C92_14355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C1C92_14360 PF02107 Flagellar L-ring protein C1C92_14365 PF02119 Flagellar P-ring protein C1C92_14375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C1C92_14375 PF07196 Flagellin hook IN motif C1C92_14385 PF00571 CBS domain C1C92_14385 PF01769 Divalent cation transporter C1C92_14385 PF03448 MgtE intracellular N domain C1C92_14395 PF07282 Putative transposase DNA-binding domain C1C92_14395 PF01385 Probable transposase C1C92_14395 PF12323 Helix-turn-helix domain C1C92_14405 PF02541 Ppx/GppA phosphatase family C1C92_14410 PF17941 Polyphosphate kinase C-terminal domain 1 C1C92_14410 PF13089 Polyphosphate kinase N-terminal domain C1C92_14410 PF13090 Polyphosphate kinase C-terminal domain 2 C1C92_14410 PF02503 Polyphosphate kinase middle domain C1C92_14415 PF01842 ACT domain C1C92_14425 PF02954 Bacterial regulatory protein, Fis family C1C92_14425 PF00072 Response regulator receiver domain C1C92_14425 PF00158 Sigma-54 interaction domain C1C92_14430 PF00512 His Kinase A (phospho-acceptor) domain C1C92_14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_14430 PF00989 PAS fold C1C92_14435 PF00158 Sigma-54 interaction domain C1C92_14435 PF02954 Bacterial regulatory protein, Fis family C1C92_14440 PF01784 NIF3 (NGG1p interacting factor 3) C1C92_14445 PF00551 Formyl transferase C1C92_14450 PF00586 AIR synthase related protein, N-terminal domain C1C92_14450 PF02769 AIR synthase related protein, C-terminal domain C1C92_14465 PF00308 Bacterial dnaA protein C1C92_14470 PF00463 Isocitrate lyase family C1C92_14475 PF01274 Malate synthase C1C92_14490 PF14437 MafB19-like deaminase C1C92_14495 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_14500 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_14510 PF01895 PhoU domain C1C92_14515 PF01595 Cyclin M transmembrane N-terminal domain C1C92_14515 PF00571 CBS domain C1C92_14515 PF03471 Transporter associated domain C1C92_14525 PF02607 B12 binding domain C1C92_14525 PF02310 B12 binding domain C1C92_14525 PF02965 Vitamin B12 dependent methionine synthase, activation domain C1C92_14525 PF00809 Pterin binding enzyme C1C92_14525 PF02574 Homocysteine S-methyltransferase C1C92_14530 PF13520 Amino acid permease C1C92_14535 PF04116 Fatty acid hydroxylase superfamily C1C92_14545 PF00005 ABC transporter C1C92_14550 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_14555 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_14565 PF14760 Rnk N-terminus C1C92_14565 PF01272 Transcription elongation factor, GreA/GreB, C-term C1C92_14580 PF00245 Alkaline phosphatase C1C92_14585 PF00245 Alkaline phosphatase C1C92_14590 PF01926 50S ribosome-binding GTPase C1C92_14595 PF07690 Major Facilitator Superfamily C1C92_14600 PF00850 Histone deacetylase domain C1C92_14610 PF13307 Helicase C-terminal domain C1C92_14610 PF06733 DEAD_2 C1C92_14615 PF13609 Gram-negative porin C1C92_14625 PF00155 Aminotransferase class I and II C1C92_14630 PF05872 Bacterial protein of unknown function (DUF853) C1C92_14650 PF00664 ABC transporter transmembrane region C1C92_14650 PF00005 ABC transporter C1C92_14655 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C1C92_14660 PF03966 Trm112p-like protein C1C92_14665 PF02348 Cytidylyltransferase C1C92_14670 PF00196 Bacterial regulatory proteins, luxR family C1C92_14670 PF00072 Response regulator receiver domain C1C92_14675 PF08459 UvrC Helix-hairpin-helix N-terminal C1C92_14675 PF01541 GIY-YIG catalytic domain C1C92_14675 PF02151 UvrB/uvrC motif C1C92_14680 PF01066 CDP-alcohol phosphatidyltransferase C1C92_14710 PF08240 Alcohol dehydrogenase GroES-like domain C1C92_14710 PF00107 Zinc-binding dehydrogenase C1C92_14715 PF16925 Tetracyclin repressor-like, C-terminal domain C1C92_14715 PF00440 Bacterial regulatory proteins, tetR family C1C92_14720 PF04226 Transglycosylase associated protein C1C92_14725 PF00149 Calcineurin-like phosphoesterase C1C92_14735 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C1C92_14740 PF09190 DALR domain C1C92_14740 PF01406 tRNA synthetases class I (C) catalytic domain C1C92_14765 PF13185 GAF domain C1C92_14765 PF00990 Diguanylate cyclase, GGDEF domain C1C92_14800 PF01169 Uncharacterized protein family UPF0016 C1C92_14805 PF01253 Translation initiation factor SUI1 C1C92_14815 PF07670 Nucleoside recognition C1C92_14815 PF02421 Ferrous iron transport protein B C1C92_14815 PF07664 Ferrous iron transport protein B C terminus C1C92_14815 PF17910 FeoB cytosolic helical domain C1C92_14825 PF00437 Type II/IV secretion system protein C1C92_14840 PF01032 FecCD transport family C1C92_14845 PF00005 ABC transporter C1C92_14855 PF00793 DAHP synthetase I family C1C92_14860 PF01219 Prokaryotic diacylglycerol kinase C1C92_14865 PF01842 ACT domain C1C92_14865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C1C92_14865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C1C92_14870 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C1C92_14875 PF01812 5-formyltetrahydrofolate cyclo-ligase family C1C92_14885 PF05173 Dihydrodipicolinate reductase, C-terminus C1C92_14885 PF01113 Dihydrodipicolinate reductase, N-terminus C1C92_14890 PF00117 Glutamine amidotransferase class-I C1C92_14890 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C1C92_14895 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C1C92_14895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C1C92_14895 PF02142 MGS-like domain C1C92_14900 PF00682 HMGL-like C1C92_14900 PF08502 LeuA allosteric (dimerisation) domain C1C92_14905 PF00990 Diguanylate cyclase, GGDEF domain C1C92_14910 PF07759 Protein of unknown function (DUF1615) C1C92_14945 PF00271 Helicase conserved C-terminal domain C1C92_14945 PF00270 DEAD/DEAH box helicase C1C92_14955 PF14521 Lysine-specific metallo-endopeptidase C1C92_14980 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_14985 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_14995 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_14995 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C1C92_15000 PF01645 Conserved region in glutamate synthase C1C92_15000 PF04898 Glutamate synthase central domain C1C92_15000 PF01493 GXGXG motif C1C92_15000 PF00310 Glutamine amidotransferases class-II C1C92_15005 PF16199 Radical_SAM C-terminal domain C1C92_15005 PF04055 Radical SAM superfamily C1C92_15010 PF00005 ABC transporter C1C92_15010 PF00664 ABC transporter transmembrane region C1C92_15010 PF03412 Peptidase C39 family C1C92_15050 PF00324 Amino acid permease C1C92_15060 PF03618 Kinase/pyrophosphorylase C1C92_15065 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C1C92_15065 PF02896 PEP-utilising enzyme, TIM barrel domain C1C92_15065 PF00391 PEP-utilising enzyme, mobile domain C1C92_15070 PF00005 ABC transporter C1C92_15090 PF03180 NLPA lipoprotein C1C92_15100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C1C92_15100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C1C92_15100 PF11890 Domain of unknown function (DUF3410) C1C92_15105 PF01118 Semialdehyde dehydrogenase, NAD binding domain C1C92_15105 PF02774 Semialdehyde dehydrogenase, dimerisation domain C1C92_15115 PF01416 tRNA pseudouridine synthase C1C92_15120 PF17848 Acetyl-coA carboxylase zinc finger domain C1C92_15120 PF01039 Carboxyl transferase domain C1C92_15125 PF02875 Mur ligase family, glutamate ligase domain C1C92_15125 PF08245 Mur ligase middle domain C1C92_15130 PF05036 Sporulation related domain C1C92_15135 PF04358 DsrC like protein C1C92_15140 PF12805 FUSC-like inner membrane protein yccS C1C92_15145 PF01027 Inhibitor of apoptosis-promoting Bax1 C1C92_15155 PF00593 TonB dependent receptor C1C92_15155 PF07660 Secretin and TonB N terminus short domain C1C92_15155 PF07715 TonB-dependent Receptor Plug Domain C1C92_15170 PF04303 PrpF protein C1C92_15175 PF00330 Aconitase family (aconitate hydratase) C1C92_15175 PF00694 Aconitase C-terminal domain C1C92_15180 PF00285 Citrate synthase, C-terminal domain C1C92_15190 PF08447 PAS fold C1C92_15190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_15195 PF13426 PAS domain C1C92_15195 PF00990 Diguanylate cyclase, GGDEF domain C1C92_15195 PF00563 EAL domain C1C92_15200 PF00849 RNA pseudouridylate synthase C1C92_15210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C1C92_15215 PF04209 homogentisate 1,2-dioxygenase C1C92_15225 PF02798 Glutathione S-transferase, N-terminal domain C1C92_15225 PF14497 Glutathione S-transferase, C-terminal domain C1C92_15240 PF00733 Asparagine synthase C1C92_15240 PF13537 Glutamine amidotransferase domain C1C92_15250 PF13344 Haloacid dehalogenase-like hydrolase C1C92_15255 PF00962 Adenosine/AMP deaminase C1C92_15265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C1C92_15270 PF03471 Transporter associated domain C1C92_15270 PF03741 Integral membrane protein TerC family C1C92_15280 PF02913 FAD linked oxidases, C-terminal domain C1C92_15280 PF01565 FAD binding domain C1C92_15280 PF13183 4Fe-4S dicluster domain C1C92_15290 PF03061 Thioesterase superfamily C1C92_15295 PF00271 Helicase conserved C-terminal domain C1C92_15295 PF00270 DEAD/DEAH box helicase C1C92_15295 PF03880 DbpA RNA binding domain C1C92_15305 PF00563 EAL domain C1C92_15305 PF00990 Diguanylate cyclase, GGDEF domain C1C92_15305 PF08447 PAS fold C1C92_15305 PF08448 PAS fold C1C92_15310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_15310 PF03466 LysR substrate binding domain C1C92_15315 PF07690 Major Facilitator Superfamily C1C92_15320 PF03553 Na+/H+ antiporter family C1C92_15320 PF13726 Na+-H+ antiporter family C1C92_15325 PF00929 Exonuclease C1C92_15330 PF12729 Four helix bundle sensory module for signal transduction C1C92_15330 PF00672 HAMP domain C1C92_15330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_15335 PF18393 MotY N-terminal domain C1C92_15335 PF00691 OmpA family C1C92_15340 PF00459 Inositol monophosphatase family C1C92_15350 PF00043 Glutathione S-transferase, C-terminal domain C1C92_15350 PF02798 Glutathione S-transferase, N-terminal domain C1C92_15355 PF00043 Glutathione S-transferase, C-terminal domain C1C92_15355 PF02798 Glutathione S-transferase, N-terminal domain C1C92_15365 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_15370 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_15370 PF12911 N-terminal TM domain of oligopeptide transport permease C C1C92_15375 PF00005 ABC transporter C1C92_15375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_15380 PF07690 Major Facilitator Superfamily C1C92_15390 PF05164 Cell division protein ZapA C1C92_15395 PF03695 Uncharacterised protein family (UPF0149) C1C92_15400 PF01494 FAD binding domain C1C92_15405 PF01494 FAD binding domain C1C92_15410 PF08669 Glycine cleavage T-protein C-terminal barrel domain C1C92_15410 PF01571 Aminomethyltransferase folate-binding domain C1C92_15415 PF01597 Glycine cleavage H-protein C1C92_15420 PF02347 Glycine cleavage system P-protein C1C92_15430 PF00501 AMP-binding enzyme C1C92_15430 PF13193 AMP-binding enzyme C-terminal domain C1C92_15430 PF00391 PEP-utilising enzyme, mobile domain C1C92_15430 PF00975 Thioesterase domain C1C92_15430 PF08241 Methyltransferase domain C1C92_15430 PF00550 Phosphopantetheine attachment site C1C92_15430 PF00668 Condensation domain C1C92_15440 PF07690 Major Facilitator Superfamily C1C92_15445 PF13192 Thioredoxin domain C1C92_15445 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_15450 PF10417 C-terminal domain of 1-Cys peroxiredoxin C1C92_15450 PF00578 AhpC/TSA family C1C92_15455 PF00571 CBS domain C1C92_15460 PF02547 Queuosine biosynthesis protein C1C92_15465 PF01702 Queuine tRNA-ribosyltransferase C1C92_15470 PF02699 Preprotein translocase subunit C1C92_15475 PF07549 SecD/SecF GG Motif C1C92_15475 PF02355 Protein export membrane protein C1C92_15475 PF13721 SecD export protein N-terminal TM region C1C92_15480 PF07549 SecD/SecF GG Motif C1C92_15480 PF02355 Protein export membrane protein C1C92_15485 PF00581 Rhodanese-like domain C1C92_15490 PF13181 Tetratricopeptide repeat C1C92_15490 PF07719 Tetratricopeptide repeat C1C92_15510 PF00588 SpoU rRNA Methylase family C1C92_15515 PF02082 Transcriptional regulator C1C92_15520 PF00266 Aminotransferase class-V C1C92_15525 PF01592 NifU-like N terminal domain C1C92_15530 PF01521 Iron-sulphur cluster biosynthesis C1C92_15535 PF07743 HSCB C-terminal oligomerisation domain C1C92_15535 PF00226 DnaJ domain C1C92_15540 PF00012 Hsp70 protein C1C92_15545 PF00111 2Fe-2S iron-sulfur cluster binding domain C1C92_15550 PF00883 Cytosol aminopeptidase family, catalytic domain C1C92_15550 PF12404 Peptidase C1C92_15555 PF00883 Cytosol aminopeptidase family, catalytic domain C1C92_15555 PF12404 Peptidase C1C92_15560 PF00334 Nucleoside diphosphate kinase C1C92_15565 PF04055 Radical SAM superfamily C1C92_15575 PF13464 Domain of unknown function (DUF4115) C1C92_15580 PF04551 GcpE protein C1C92_15585 PF13393 Histidyl-tRNA synthetase C1C92_15585 PF03129 Anticodon binding domain C1C92_15590 PF09976 Tetratricopeptide repeat-like domain C1C92_15595 PF13360 PQQ-like domain C1C92_15600 PF01926 50S ribosome-binding GTPase C1C92_15600 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C1C92_15605 PF07191 zinc-ribbons C1C92_15610 PF01464 Transglycosylase SLT domain C1C92_15610 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_15615 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C1C92_15615 PF02769 AIR synthase related protein, C-terminal domain C1C92_15615 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C1C92_15620 PF00361 Proton-conducting membrane transporter C1C92_15625 PF00361 Proton-conducting membrane transporter C1C92_15630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C1C92_15630 PF00361 Proton-conducting membrane transporter C1C92_15635 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C1C92_15640 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C1C92_15645 PF12838 4Fe-4S dicluster domain C1C92_15650 PF00146 NADH dehydrogenase C1C92_15655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C1C92_15655 PF00384 Molybdopterin oxidoreductase C1C92_15655 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C1C92_15660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C1C92_15660 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C1C92_15670 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C1C92_15670 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C1C92_15675 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C1C92_15680 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C1C92_15685 PF00691 OmpA family C1C92_15685 PF13677 Membrane MotB of proton-channel complex MotA/MotB C1C92_15690 PF01618 MotA/TolQ/ExbB proton channel family C1C92_15705 PF04536 TPM domain C1C92_15715 PF03411 Penicillin-insensitive murein endopeptidase C1C92_15725 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C1C92_15730 PF00248 Aldo/keto reductase family C1C92_15745 PF01212 Beta-eliminating lyase C1C92_15755 PF00486 Transcriptional regulatory protein, C terminal C1C92_15755 PF00072 Response regulator receiver domain C1C92_15760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_15760 PF03466 LysR substrate binding domain C1C92_15770 PF03707 Bacterial signalling protein N terminal repeat C1C92_15770 PF13188 PAS domain C1C92_15770 PF00563 EAL domain C1C92_15770 PF00990 Diguanylate cyclase, GGDEF domain C1C92_15775 PF03806 AbgT putative transporter family C1C92_15780 PF00881 Nitroreductase family C1C92_15795 PF07690 Major Facilitator Superfamily C1C92_15800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_15800 PF03466 LysR substrate binding domain C1C92_15805 PF00925 GTP cyclohydrolase II C1C92_15810 PF02224 Cytidylate kinase C1C92_15815 PF00575 S1 RNA binding domain C1C92_15820 PF00216 Bacterial DNA-binding protein C1C92_15830 PF18073 Rubredoxin metal binding domain C1C92_15835 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C1C92_15850 PF06508 Queuosine biosynthesis protein QueC C1C92_15855 PF04055 Radical SAM superfamily C1C92_15860 PF12843 Putative quorum-sensing-regulated virulence factor C1C92_15865 PF01923 Cobalamin adenosyltransferase C1C92_15870 PF00816 H-NS histone family C1C92_15875 PF03553 Na+/H+ antiporter family C1C92_15880 PF00265 Thymidine kinase C1C92_15890 PF10722 Putative bacterial sensory transduction regulator C1C92_15915 PF00455 DeoR C terminal sensor domain C1C92_15915 PF08220 DeoR-like helix-turn-helix domain C1C92_15920 PF00141 Peroxidase C1C92_15940 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C1C92_15940 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C1C92_15945 PF01053 Cys/Met metabolism PLP-dependent enzyme C1C92_15955 PF13460 NAD(P)H-binding C1C92_15960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_15960 PF03466 LysR substrate binding domain C1C92_15965 PF12833 Helix-turn-helix domain C1C92_15965 PF02311 AraC-like ligand binding domain C1C92_15970 PF12792 CSS motif domain associated with EAL C1C92_15970 PF00563 EAL domain C1C92_15975 PF17158 Membrane-associated sensor, integral membrane domain C1C92_15975 PF00990 Diguanylate cyclase, GGDEF domain C1C92_15980 PF00593 TonB dependent receptor C1C92_15980 PF07715 TonB-dependent Receptor Plug Domain C1C92_15990 PF03466 LysR substrate binding domain C1C92_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_15995 PF01717 Cobalamin-independent synthase, Catalytic domain C1C92_15995 PF08267 Cobalamin-independent synthase, N-terminal domain C1C92_16005 PF00478 IMP dehydrogenase / GMP reductase domain C1C92_16005 PF00571 CBS domain C1C92_16010 PF01266 FAD dependent oxidoreductase C1C92_16015 PF04244 Deoxyribodipyrimidine photo-lyase-related protein C1C92_16025 PF00768 D-alanyl-D-alanine carboxypeptidase C1C92_16030 PF03918 Cytochrome C biogenesis protein C1C92_16035 PF08534 Redoxin C1C92_16040 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal C1C92_16040 PF01578 Cytochrome C assembly protein C1C92_16045 PF03916 Polysulphide reductase, NrfD C1C92_16050 PF13247 4Fe-4S dicluster domain C1C92_16050 PF00037 4Fe-4S binding domain C1C92_16055 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) C1C92_16055 PF13435 Cytochrome c554 and c-prime C1C92_16060 PF02335 Cytochrome c552 C1C92_16070 PF02754 Cysteine-rich domain C1C92_16070 PF13183 4Fe-4S dicluster domain C1C92_16075 PF00890 FAD binding domain C1C92_16080 PF01266 FAD dependent oxidoreductase C1C92_16080 PF04324 BFD-like [2Fe-2S] binding domain C1C92_16085 PF02810 SEC-C motif C1C92_16090 PF17200 Single Cache domain 2 C1C92_16090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_16090 PF00672 HAMP domain C1C92_16095 PF00480 ROK family C1C92_16095 PF01047 MarR family C1C92_16100 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C1C92_16100 PF17203 Single cache domain 3 C1C92_16100 PF00989 PAS fold C1C92_16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_16105 PF00072 Response regulator receiver domain C1C92_16110 PF01970 Tripartite tricarboxylate transporter TctA family C1C92_16120 PF03401 Tripartite tricarboxylate transporter family receptor C1C92_16125 PF01464 Transglycosylase SLT domain C1C92_16125 PF10145 Phage-related minor tail protein C1C92_16125 PF01551 Peptidase family M23 C1C92_16130 PF02080 TrkA-C domain C1C92_16130 PF06826 Predicted Permease Membrane Region C1C92_16145 PF00271 Helicase conserved C-terminal domain C1C92_16145 PF04851 Type III restriction enzyme, res subunit C1C92_16145 PF02151 UvrB/uvrC motif C1C92_16145 PF12344 Ultra-violet resistance protein B C1C92_16145 PF17757 UvrB interaction domain C1C92_16155 PF09335 SNARE associated Golgi protein C1C92_16160 PF02600 Disulfide bond formation protein DsbB C1C92_16165 PF06450 Bacterial Na+/H+ antiporter B (NhaB) C1C92_16170 PF00392 Bacterial regulatory proteins, gntR family C1C92_16170 PF07840 FadR C-terminal domain C1C92_16175 PF04293 SpoVR like protein C1C92_16180 PF04285 Protein of unknown function (DUF444) C1C92_16185 PF08298 PrkA AAA domain C1C92_16185 PF06798 PrkA serine protein kinase C-terminal domain C1C92_16190 PF09382 RQC domain C1C92_16190 PF00270 DEAD/DEAH box helicase C1C92_16190 PF00570 HRDC domain C1C92_16190 PF00271 Helicase conserved C-terminal domain C1C92_16190 PF16124 RecQ zinc-binding C1C92_16195 PF00375 Sodium:dicarboxylate symporter family C1C92_16200 PF03222 Tryptophan/tyrosine permease family C1C92_16205 PF00293 NUDIX domain C1C92_16210 PF00425 chorismate binding enzyme C1C92_16210 PF04715 Anthranilate synthase component I, N terminal region C1C92_16230 PF00343 Carbohydrate phosphorylase C1C92_16240 PF00939 Sodium:sulfate symporter transmembrane region C1C92_16245 PF00085 Thioredoxin C1C92_16250 PF01627 Hpt domain C1C92_16250 PF00072 Response regulator receiver domain C1C92_16250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C1C92_16250 PF00512 His Kinase A (phospho-acceptor) domain C1C92_16250 PF00672 HAMP domain C1C92_16250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_16255 PF00005 ABC transporter C1C92_16255 PF00664 ABC transporter transmembrane region C1C92_16260 PF00664 ABC transporter transmembrane region C1C92_16260 PF00005 ABC transporter C1C92_16285 PF01575 MaoC like domain C1C92_16290 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus C1C92_16290 PF00561 alpha/beta hydrolase fold C1C92_16310 PF08543 Phosphomethylpyrimidine kinase C1C92_16315 PF03992 Antibiotic biosynthesis monooxygenase C1C92_16320 PF13673 Acetyltransferase (GNAT) domain C1C92_16330 PF01928 CYTH domain C1C92_16345 PF00583 Acetyltransferase (GNAT) family C1C92_16350 PF00271 Helicase conserved C-terminal domain C1C92_16350 PF00270 DEAD/DEAH box helicase C1C92_16355 PF00255 Glutathione peroxidase C1C92_16365 PF07478 D-ala D-ala ligase C-terminus C1C92_16365 PF01820 D-ala D-ala ligase N-terminus C1C92_16380 PF01925 Sulfite exporter TauE/SafE C1C92_16385 PF03466 LysR substrate binding domain C1C92_16385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_16400 PF11398 Protein of unknown function (DUF2813) C1C92_16440 PF02789 Cytosol aminopeptidase family, N-terminal domain C1C92_16440 PF00883 Cytosol aminopeptidase family, catalytic domain C1C92_16445 PF13419 Haloacid dehalogenase-like hydrolase C1C92_16450 PF07687 Peptidase dimerisation domain C1C92_16450 PF01546 Peptidase family M20/M25/M40 C1C92_16455 PF00365 Phosphofructokinase C1C92_16460 PF00121 Triosephosphate isomerase C1C92_16465 PF02698 DUF218 domain C1C92_16475 PF03882 MukF winged-helix domain C1C92_16475 PF17193 MukF C-terminal domain C1C92_16475 PF17192 MukF middle domain C1C92_16480 PF04288 MukE-like family C1C92_16485 PF04310 MukB N-terminal C1C92_16485 PF16330 MukB hinge domain C1C92_16490 PF03330 Lytic transglycolase C1C92_16490 PF05036 Sporulation related domain C1C92_16510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_16510 PF03466 LysR substrate binding domain C1C92_16515 PF01048 Phosphorylase superfamily C1C92_16520 PF07670 Nucleoside recognition C1C92_16520 PF01773 Na+ dependent nucleoside transporter N-terminus C1C92_16520 PF07662 Na+ dependent nucleoside transporter C-terminus C1C92_16525 PF01791 DeoC/LacD family aldolase C1C92_16535 PF00300 Histidine phosphatase superfamily (branch 1) C1C92_16550 PF01810 LysE type translocator C1C92_16565 PF03831 PhnA domain C1C92_16565 PF08274 PhnA Zinc-Ribbon C1C92_16575 PF08329 Chitinase A, N-terminal domain C1C92_16575 PF00704 Glycosyl hydrolases family 18 C1C92_16600 PF01713 Smr domain C1C92_16605 PF05175 Methyltransferase small domain C1C92_16610 PF01264 Chorismate synthase C1C92_16620 PF00271 Helicase conserved C-terminal domain C1C92_16620 PF00270 DEAD/DEAH box helicase C1C92_16635 PF03222 Tryptophan/tyrosine permease family C1C92_16640 PF00356 Bacterial regulatory proteins, lacI family C1C92_16640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C1C92_16645 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C1C92_16645 PF00381 PTS HPr component phosphorylation site C1C92_16650 PF00294 pfkB family carbohydrate kinase C1C92_16655 PF02378 Phosphotransferase system, EIIC C1C92_16655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C1C92_16660 PF06945 Protein of unknown function (DUF1289) C1C92_16665 PF03562 MltA specific insert domain C1C92_16665 PF06725 3D domain C1C92_16670 PF00111 2Fe-2S iron-sulfur cluster binding domain C1C92_16675 PF00268 Ribonucleotide reductase, small chain C1C92_16680 PF03477 ATP cone domain C1C92_16680 PF00317 Ribonucleotide reductase, all-alpha domain C1C92_16680 PF02867 Ribonucleotide reductase, barrel domain C1C92_16685 PF13419 Haloacid dehalogenase-like hydrolase C1C92_16695 PF03989 DNA gyrase C-terminal domain, beta-propeller C1C92_16695 PF00521 DNA gyrase/topoisomerase IV, subunit A C1C92_16700 PF04055 Radical SAM superfamily C1C92_16715 PF03129 Anticodon binding domain C1C92_16715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C1C92_16715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C1C92_16715 PF02824 TGS domain C1C92_16720 PF05198 Translation initiation factor IF-3, N-terminal domain C1C92_16720 PF00707 Translation initiation factor IF-3, C-terminal domain C1C92_16725 PF01632 Ribosomal protein L35 C1C92_16730 PF00453 Ribosomal protein L20 C1C92_16735 PF01409 tRNA synthetases class II core domain (F) C1C92_16735 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C1C92_16740 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C1C92_16740 PF01588 Putative tRNA binding domain C1C92_16740 PF03483 B3/4 domain C1C92_16740 PF03147 Ferredoxin-fold anticodon binding domain C1C92_16740 PF03484 tRNA synthetase B5 domain C1C92_16745 PF00216 Bacterial DNA-binding protein C1C92_16750 PF00072 Response regulator receiver domain C1C92_16750 PF00512 His Kinase A (phospho-acceptor) domain C1C92_16750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_16750 PF09456 RcsC Alpha-Beta-Loop (ABL) C1C92_16765 PF02146 Sir2 family C1C92_16775 PF00990 Diguanylate cyclase, GGDEF domain C1C92_16775 PF00563 EAL domain C1C92_16775 PF03707 Bacterial signalling protein N terminal repeat C1C92_16780 PF00356 Bacterial regulatory proteins, lacI family C1C92_16785 PF00294 pfkB family carbohydrate kinase C1C92_16790 PF13407 Periplasmic binding protein domain C1C92_16795 PF02653 Branched-chain amino acid transport system / permease component C1C92_16800 PF00005 ABC transporter C1C92_16805 PF05025 RbsD / FucU transport protein family C1C92_16810 PF02798 Glutathione S-transferase, N-terminal domain C1C92_16810 PF00043 Glutathione S-transferase, C-terminal domain C1C92_16825 PF01171 PP-loop family C1C92_16830 PF00582 Universal stress protein family C1C92_16835 PF00027 Cyclic nucleotide-binding domain C1C92_16835 PF13545 Crp-like helix-turn-helix domain C1C92_16850 PF00403 Heavy-metal-associated domain C1C92_16860 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP C1C92_16860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C1C92_16875 PF00115 Cytochrome C and Quinol oxidase polypeptide I C1C92_16885 PF13185 GAF domain C1C92_16890 PF04352 ProQ/FINO family C1C92_16890 PF17516 ProQ C-terminal domain C1C92_16895 PF03572 Peptidase family S41 C1C92_16895 PF17804 Tail specific protease N-terminal domain C1C92_16895 PF11818 C-terminal domain of tail specific protease (DUF3340) C1C92_16895 PF00595 PDZ domain C1C92_16900 PF11940 Domain of unknown function (DUF3458) Ig-like fold C1C92_16900 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C1C92_16900 PF01433 Peptidase family M1 domain C1C92_16910 PF05088 Bacterial NAD-glutamate dehydrogenase C1C92_16915 PF01180 Dihydroorotate dehydrogenase C1C92_16920 PF07126 Cell-division protein ZapC C1C92_16925 PF10672 S-adenosylmethionine-dependent methyltransferase C1C92_16925 PF01170 Putative RNA methylase family UPF0020 C1C92_16925 PF02926 THUMP domain C1C92_16945 PF04957 Ribosome modulation factor C1C92_16950 PF07977 FabA-like domain C1C92_16955 PF05362 Lon protease (S16) C-terminal proteolytic domain C1C92_16955 PF13654 AAA domain C1C92_16965 PF07130 YebG protein C1C92_16975 PF04403 Paraquat-inducible protein A C1C92_16985 PF01189 16S rRNA methyltransferase RsmB/F C1C92_16985 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF C1C92_16985 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF C1C92_17015 PF00589 Phage integrase family C1C92_17020 PF01026 TatD related DNase C1C92_17025 PF09115 DNA polymerase III, delta subunit, C terminal C1C92_17030 PF02223 Thymidylate kinase C1C92_17035 PF02618 YceG-like family C1C92_17040 PF01063 Amino-transferase class IV C1C92_17045 PF00109 Beta-ketoacyl synthase, N-terminal domain C1C92_17045 PF02801 Beta-ketoacyl synthase, C-terminal domain C1C92_17050 PF00550 Phosphopantetheine attachment site C1C92_17060 PF00698 Acyl transferase domain C1C92_17065 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C1C92_17065 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C1C92_17070 PF02504 Fatty acid synthesis protein C1C92_17075 PF01783 Ribosomal L32p protein family C1C92_17080 PF02620 Large ribosomal RNA subunit accumulation protein YceD C1C92_17090 PF02545 Maf-like protein C1C92_17095 PF00849 RNA pseudouridylate synthase C1C92_17095 PF01479 S4 domain C1C92_17100 PF10150 Ribonuclease E/G family C1C92_17100 PF12111 Polyribonucleotide phosphorylase C terminal C1C92_17100 PF00575 S1 RNA binding domain C1C92_17105 PF01384 Phosphate transporter family C1C92_17110 PF00692 dUTPase C1C92_17115 PF00485 Phosphoribulokinase / Uridine kinase family C1C92_17120 PF10609 NUBPL iron-transfer P-loop NTPase C1C92_17125 PF08264 Anticodon-binding domain of tRNA C1C92_17125 PF09334 tRNA synthetases class I (M) C1C92_17125 PF01588 Putative tRNA binding domain C1C92_17130 PF02798 Glutathione S-transferase, N-terminal domain C1C92_17130 PF00043 Glutathione S-transferase, C-terminal domain C1C92_17135 PF00708 Acylphosphatase C1C92_17140 PF12729 Four helix bundle sensory module for signal transduction C1C92_17140 PF00672 HAMP domain C1C92_17140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_17145 PF10672 S-adenosylmethionine-dependent methyltransferase C1C92_17145 PF17785 PUA-like domain C1C92_17160 PF02769 AIR synthase related protein, C-terminal domain C1C92_17160 PF00586 AIR synthase related protein, N-terminal domain C1C92_17170 PF00753 Metallo-beta-lactamase superfamily C1C92_17175 PF00072 Response regulator receiver domain C1C92_17195 PF01386 Ribosomal L25p family C1C92_17205 PF11898 Domain of unknown function (DUF3418) C1C92_17205 PF00270 DEAD/DEAH box helicase C1C92_17205 PF04408 Helicase associated domain (HA2) C1C92_17205 PF00271 Helicase conserved C-terminal domain C1C92_17205 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C1C92_17215 PF00196 Bacterial regulatory proteins, luxR family C1C92_17215 PF00072 Response regulator receiver domain C1C92_17230 PF02678 Pirin C1C92_17230 PF05726 Pirin C-terminal cupin domain C1C92_17235 PF03466 LysR substrate binding domain C1C92_17235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_17240 PF02575 YbaB/EbfC DNA-binding family C1C92_17245 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C1C92_17245 PF12169 DNA polymerase III subunits gamma and tau domain III C1C92_17245 PF12170 DNA polymerase III tau subunit V interacting with alpha C1C92_17250 PF00156 Phosphoribosyl transferase domain C1C92_17255 PF04304 Protein of unknown function (DUF454) C1C92_17260 PF01207 Dihydrouridine synthase (Dus) C1C92_17270 PF00892 EamA-like transporter family C1C92_17280 PF01612 3'-5' exonuclease C1C92_17280 PF00570 HRDC domain C1C92_17285 PF00501 AMP-binding enzyme C1C92_17285 PF13193 AMP-binding enzyme C-terminal domain C1C92_17290 PF00561 alpha/beta hydrolase fold C1C92_17300 PF00814 Glycoprotease family C1C92_17305 PF04851 Type III restriction enzyme, res subunit C1C92_17305 PF13307 Helicase C-terminal domain C1C92_17315 PF01634 ATP phosphoribosyltransferase C1C92_17315 PF08029 HisG, C-terminal domain C1C92_17320 PF00815 Histidinol dehydrogenase C1C92_17325 PF00155 Aminotransferase class I and II C1C92_17330 PF08645 Polynucleotide kinase 3 phosphatase C1C92_17330 PF00475 Imidazoleglycerol-phosphate dehydratase C1C92_17335 PF00117 Glutamine amidotransferase class-I C1C92_17340 PF00977 Histidine biosynthesis protein C1C92_17345 PF00072 Response regulator receiver domain C1C92_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_17355 PF00072 Response regulator receiver domain C1C92_17355 PF00512 His Kinase A (phospho-acceptor) domain C1C92_17355 PF01627 Hpt domain C1C92_17360 PF00977 Histidine biosynthesis protein C1C92_17365 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase C1C92_17365 PF01502 Phosphoribosyl-AMP cyclohydrolase C1C92_17375 PF13280 WYL domain C1C92_17375 PF08279 HTH domain C1C92_17380 PF00501 AMP-binding enzyme C1C92_17380 PF13193 AMP-binding enzyme C-terminal domain C1C92_17385 PF05433 Glycine zipper 2TM domain C1C92_17400 PF01032 FecCD transport family C1C92_17405 PF00005 ABC transporter C1C92_17410 PF07690 Major Facilitator Superfamily C1C92_17425 PF07152 YaeQ protein C1C92_17435 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C1C92_17435 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C1C92_17435 PF00378 Enoyl-CoA hydratase/isomerase C1C92_17440 PF00108 Thiolase, N-terminal domain C1C92_17440 PF02803 Thiolase, C-terminal domain C1C92_17445 PF17863 AAA lid domain C1C92_17445 PF07726 ATPase family associated with various cellular activities (AAA) C1C92_17450 PF01882 Protein of unknown function DUF58 C1C92_17485 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) C1C92_17490 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) C1C92_17495 PF00563 EAL domain C1C92_17495 PF08668 HDOD domain C1C92_17500 PF00108 Thiolase, N-terminal domain C1C92_17500 PF02803 Thiolase, C-terminal domain C1C92_17505 PF00376 MerR family regulatory protein C1C92_17505 PF09278 MerR, DNA binding C1C92_17510 PF00375 Sodium:dicarboxylate symporter family C1C92_17515 PF06865 Pyrimidine/purine nucleoside phosphorylase C1C92_17520 PF03315 Serine dehydratase beta chain C1C92_17520 PF03313 Serine dehydratase alpha chain C1C92_17530 PF03315 Serine dehydratase beta chain C1C92_17530 PF03313 Serine dehydratase alpha chain C1C92_17535 PF13406 Transglycosylase SLT domain C1C92_17540 PF05166 YcgL domain C1C92_17545 PF05209 Septum formation inhibitor MinC, N-terminal domain C1C92_17545 PF03775 Septum formation inhibitor MinC, C-terminal domain C1C92_17550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C1C92_17555 PF03776 Septum formation topological specificity factor MinE C1C92_17560 PF04269 Protein of unknown function, DUF440 C1C92_17565 PF00912 Transglycosylase C1C92_17575 PF04269 Protein of unknown function, DUF440 C1C92_17585 PF13509 S1 domain C1C92_17585 PF17783 CvfB-like winged helix domain C1C92_17610 PF02525 Flavodoxin-like fold C1C92_17615 PF00892 EamA-like transporter family C1C92_17620 PF02222 ATP-grasp domain C1C92_17620 PF01370 NAD dependent epimerase/dehydratase family C1C92_17625 PF13419 Haloacid dehalogenase-like hydrolase C1C92_17640 PF00677 Lumazine binding domain C1C92_17645 PF06786 Uncharacterised protein family (UPF0253) C1C92_17650 PF01554 MatE C1C92_17680 PF03104 DNA polymerase family B, exonuclease domain C1C92_17680 PF00136 DNA polymerase family B C1C92_17685 PF05726 Pirin C-terminal cupin domain C1C92_17685 PF02678 Pirin C1C92_17695 PF03279 Bacterial lipid A biosynthesis acyltransferase C1C92_17700 PF03279 Bacterial lipid A biosynthesis acyltransferase C1C92_17710 PF03466 LysR substrate binding domain C1C92_17710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_17715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C1C92_17715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C1C92_17720 PF01261 Xylose isomerase-like TIM barrel C1C92_17725 PF17151 Periplasmic sensor domain C1C92_17725 PF00990 Diguanylate cyclase, GGDEF domain C1C92_17730 PF00933 Glycosyl hydrolase family 3 N terminal domain C1C92_17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_17740 PF03466 LysR substrate binding domain C1C92_17750 PF00232 Glycosyl hydrolase family 1 C1C92_17755 PF03466 LysR substrate binding domain C1C92_17755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_17760 PF00990 Diguanylate cyclase, GGDEF domain C1C92_17760 PF00072 Response regulator receiver domain C1C92_17765 PF00384 Molybdopterin oxidoreductase C1C92_17770 PF02634 FdhD/NarQ family C1C92_17785 PF03466 LysR substrate binding domain C1C92_17785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_17790 PF13407 Periplasmic binding protein domain C1C92_17795 PF00005 ABC transporter C1C92_17800 PF02653 Branched-chain amino acid transport system / permease component C1C92_17805 PF02653 Branched-chain amino acid transport system / permease component C1C92_17810 PF12706 Beta-lactamase superfamily domain C1C92_17825 PF01738 Dienelactone hydrolase family C1C92_17830 PF12146 Serine aminopeptidase, S33 C1C92_17835 PF03466 LysR substrate binding domain C1C92_17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_17845 PF00239 Resolvase, N terminal domain C1C92_17845 PF02796 Helix-turn-helix domain of resolvase C1C92_17870 PF01925 Sulfite exporter TauE/SafE C1C92_17875 PF13520 Amino acid permease C1C92_17885 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C1C92_17885 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C1C92_17890 PF00378 Enoyl-CoA hydratase/isomerase C1C92_17895 PF00378 Enoyl-CoA hydratase/isomerase C1C92_17900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C1C92_17900 PF02770 Acyl-CoA dehydrogenase, middle domain C1C92_17900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C1C92_17905 PF00171 Aldehyde dehydrogenase family C1C92_17910 PF02770 Acyl-CoA dehydrogenase, middle domain C1C92_17910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C1C92_17910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C1C92_17915 PF01039 Carboxyl transferase domain C1C92_17920 PF00378 Enoyl-CoA hydratase/isomerase C1C92_17925 PF00289 Biotin carboxylase, N-terminal domain C1C92_17925 PF02785 Biotin carboxylase C-terminal domain C1C92_17925 PF00364 Biotin-requiring enzyme C1C92_17925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C1C92_17930 PF00682 HMGL-like C1C92_17935 PF09278 MerR, DNA binding C1C92_17935 PF00376 MerR family regulatory protein C1C92_17945 PF01184 GPR1/FUN34/yaaH family C1C92_17950 PF06167 Glucose-regulated metallo-peptidase M90 C1C92_17960 PF01235 Sodium:alanine symporter family C1C92_17965 PF00378 Enoyl-CoA hydratase/isomerase C1C92_17980 PF04341 Protein of unknown function, DUF485 C1C92_17985 PF00474 Sodium:solute symporter family C1C92_17990 PF00005 ABC transporter C1C92_17990 PF12848 ABC transporter C1C92_17995 PF13145 PPIC-type PPIASE domain C1C92_18000 PF00216 Bacterial DNA-binding protein C1C92_18005 PF05362 Lon protease (S16) C-terminal proteolytic domain C1C92_18005 PF00004 ATPase family associated with various cellular activities (AAA) C1C92_18005 PF02190 ATP-dependent protease La (LON) substrate-binding domain C1C92_18010 PF10431 C-terminal, D2-small domain, of ClpB protein C1C92_18010 PF07724 AAA domain (Cdc48 subfamily) C1C92_18010 PF06689 ClpX C4-type zinc finger C1C92_18015 PF00574 Clp protease C1C92_18020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C1C92_18020 PF05698 Bacterial trigger factor protein (TF) C-terminus C1C92_18020 PF05697 Bacterial trigger factor protein (TF) C1C92_18040 PF02687 FtsX-like permease family C1C92_18040 PF12704 MacB-like periplasmic core domain C1C92_18045 PF00005 ABC transporter C1C92_18050 PF12704 MacB-like periplasmic core domain C1C92_18050 PF02687 FtsX-like permease family C1C92_18060 PF17757 UvrB interaction domain C1C92_18060 PF03461 TRCF domain C1C92_18060 PF00271 Helicase conserved C-terminal domain C1C92_18060 PF02559 CarD-like/TRCF domain C1C92_18060 PF00270 DEAD/DEAH box helicase C1C92_18065 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C1C92_18070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_18085 PF00300 Histidine phosphatase superfamily (branch 1) C1C92_18090 PF00675 Insulinase (Peptidase family M16) C1C92_18090 PF05193 Peptidase M16 inactive domain C1C92_18090 PF16187 Middle or third domain of peptidase_M16 C1C92_18095 PF05724 Thiopurine S-methyltransferase (TPMT) C1C92_18105 PF01047 MarR family C1C92_18125 PF02805 Metal binding domain of Ada C1C92_18125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C1C92_18125 PF12833 Helix-turn-helix domain C1C92_18125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C1C92_18135 PF13592 Winged helix-turn helix C1C92_18135 PF13358 DDE superfamily endonuclease C1C92_18155 PF09278 MerR, DNA binding C1C92_18155 PF00376 MerR family regulatory protein C1C92_18160 PF02411 MerT mercuric transport protein C1C92_18165 PF00403 Heavy-metal-associated domain C1C92_18170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C1C92_18170 PF00403 Heavy-metal-associated domain C1C92_18170 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_18175 PF12324 Helix-turn-helix domain of alkylmercury lyase C1C92_18175 PF03243 Alkylmercury lyase C1C92_18180 PF13411 MerR HTH family regulatory protein C1C92_18185 PF05052 MerE protein C1C92_18230 PF17273 Family of unknown function (DUF5338) C1C92_18265 PF13356 Arm DNA-binding domain C1C92_18265 PF00589 Phage integrase family C1C92_18275 PF02540 NAD synthase C1C92_18275 PF00117 Glutamine amidotransferase class-I C1C92_18275 PF00958 GMP synthase C terminal domain C1C92_18280 PF00478 IMP dehydrogenase / GMP reductase domain C1C92_18280 PF00571 CBS domain C1C92_18290 PF01373 Glycosyl hydrolase family 14 C1C92_18290 PF03423 Carbohydrate binding domain (family 25) C1C92_18290 PF00128 Alpha amylase, catalytic domain C1C92_18300 PF02601 Exonuclease VII, large subunit C1C92_18300 PF13742 OB-fold nucleic acid binding domain C1C92_18305 PF04055 Radical SAM superfamily C1C92_18310 PF00691 OmpA family C1C92_18315 PF00563 EAL domain C1C92_18315 PF00990 Diguanylate cyclase, GGDEF domain C1C92_18315 PF03707 Bacterial signalling protein N terminal repeat C1C92_18320 PF13689 YfiR/HmsC-like C1C92_18325 PF00158 Sigma-54 interaction domain C1C92_18325 PF18024 Helix-turn-helix domain C1C92_18330 PF01329 Pterin 4 alpha carbinolamine dehydratase C1C92_18335 PF00351 Biopterin-dependent aromatic amino acid hydroxylase C1C92_18340 PF05128 Domain of unknown function (DUF697) C1C92_18345 PF04317 YcjX-like family, DUF463 C1C92_18355 PF06667 Phage shock protein B C1C92_18360 PF04012 PspA/IM30 family C1C92_18365 PF00158 Sigma-54 interaction domain C1C92_18365 PF02954 Bacterial regulatory protein, Fis family C1C92_18370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_18375 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_18380 PF12911 N-terminal TM domain of oligopeptide transport permease C C1C92_18380 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_18385 PF00005 ABC transporter C1C92_18385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_18390 PF00005 ABC transporter C1C92_18395 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) C1C92_18400 PF00356 Bacterial regulatory proteins, lacI family C1C92_18405 PF02378 Phosphotransferase system, EIIC C1C92_18405 PF00367 phosphotransferase system, EIIB C1C92_18410 PF00232 Glycosyl hydrolase family 1 C1C92_18415 PF00156 Phosphoribosyl transferase domain C1C92_18420 PF02674 Colicin V production protein C1C92_18425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C1C92_18425 PF02403 Seryl-tRNA synthetase N-terminal domain C1C92_18435 PF12002 MgsA AAA+ ATPase C terminal C1C92_18435 PF16193 AAA C-terminal domain C1C92_18435 PF00004 ATPase family associated with various cellular activities (AAA) C1C92_18440 PF03548 Outer membrane lipoprotein carrier protein LolA C1C92_18445 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C1C92_18445 PF17854 FtsK alpha domain C1C92_18445 PF01580 FtsK/SpoIIIE family C1C92_18445 PF09397 Ftsk gamma domain C1C92_18450 PF01037 Lrp/AsnC ligand binding domain C1C92_18455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C1C92_18455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C1C92_18460 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_18465 PF00990 Diguanylate cyclase, GGDEF domain C1C92_18465 PF05230 MASE2 domain C1C92_18470 PF05433 Glycine zipper 2TM domain C1C92_18475 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C1C92_18480 PF04377 Arginine-tRNA-protein transferase, C terminus C1C92_18480 PF04376 Arginine-tRNA-protein transferase, N terminus C1C92_18485 PF01176 Translation initiation factor 1A / IF-1 C1C92_18490 PF07724 AAA domain (Cdc48 subfamily) C1C92_18490 PF00004 ATPase family associated with various cellular activities (AAA) C1C92_18490 PF17871 AAA lid domain C1C92_18490 PF02861 Clp amino terminal domain, pathogenicity island component C1C92_18490 PF10431 C-terminal, D2-small domain, of ClpB protein C1C92_18495 PF02617 ATP-dependent Clp protease adaptor protein ClpS C1C92_18500 PF00313 'Cold-shock' DNA-binding domain C1C92_18505 PF02774 Semialdehyde dehydrogenase, dimerisation domain C1C92_18505 PF01118 Semialdehyde dehydrogenase, NAD binding domain C1C92_18510 PF00893 Small Multidrug Resistance protein C1C92_18520 PF18381 YcaO cyclodehydratase C-terminal domain C1C92_18520 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding C1C92_18525 PF01226 Formate/nitrite transporter C1C92_18530 PF01228 Glycine radical C1C92_18530 PF02901 Pyruvate formate lyase-like C1C92_18545 PF00266 Aminotransferase class-V C1C92_18550 PF07702 UTRA domain C1C92_18550 PF00392 Bacterial regulatory proteins, gntR family C1C92_18560 PF00005 ABC transporter C1C92_18570 PF01266 FAD dependent oxidoreductase C1C92_18575 PF03692 Putative zinc- or iron-chelating domain C1C92_18585 PF00549 CoA-ligase C1C92_18585 PF02629 CoA binding domain C1C92_18590 PF00549 CoA-ligase C1C92_18590 PF08442 ATP-grasp domain C1C92_18595 PF02817 e3 binding domain C1C92_18595 PF00364 Biotin-requiring enzyme C1C92_18595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C1C92_18600 PF16078 2-oxoglutarate dehydrogenase N-terminus C1C92_18600 PF02779 Transketolase, pyrimidine binding domain C1C92_18600 PF16870 2-oxoglutarate dehydrogenase C-terminal C1C92_18600 PF00676 Dehydrogenase E1 component C1C92_18605 PF13085 2Fe-2S iron-sulfur cluster binding domain C1C92_18610 PF02910 Fumarate reductase flavoprotein C-term C1C92_18610 PF00890 FAD binding domain C1C92_18615 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C1C92_18620 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C1C92_18625 PF00285 Citrate synthase, C-terminal domain C1C92_18640 PF02801 Beta-ketoacyl synthase, C-terminal domain C1C92_18640 PF00109 Beta-ketoacyl synthase, N-terminal domain C1C92_18645 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C1C92_18645 PF01266 FAD dependent oxidoreductase C1C92_18655 PF03606 C4-dicarboxylate anaerobic carrier C1C92_18670 PF01863 Protein of unknown function DUF45 C1C92_18685 PF01197 Ribosomal protein L31 C1C92_18690 PF00444 Ribosomal protein L36 C1C92_18695 PF12833 Helix-turn-helix domain C1C92_18695 PF02311 AraC-like ligand binding domain C1C92_18700 PF02653 Branched-chain amino acid transport system / permease component C1C92_18705 PF00005 ABC transporter C1C92_18710 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C1C92_18715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C1C92_18720 PF00596 Class II Aldolase and Adducin N-terminal domain C1C92_18725 PF11762 L-arabinose isomerase C-terminal domain C1C92_18725 PF02610 L-arabinose isomerase C1C92_18730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_18730 PF03466 LysR substrate binding domain C1C92_18735 PF00155 Aminotransferase class I and II C1C92_18740 PF00795 Carbon-nitrogen hydrolase C1C92_18745 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_18755 PF09924 Uncharacterised conserved protein (DUF2156) C1C92_18755 PF03706 Lysylphosphatidylglycerol synthase TM region C1C92_18760 PF00149 Calcineurin-like phosphoesterase C1C92_18780 PF00224 Pyruvate kinase, barrel domain C1C92_18780 PF02887 Pyruvate kinase, alpha/beta domain C1C92_18785 PF07745 Glycosyl hydrolase family 53 C1C92_18790 PF00367 phosphotransferase system, EIIB C1C92_18790 PF02378 Phosphotransferase system, EIIC C1C92_18795 PF08533 Beta-galactosidase C-terminal domain C1C92_18795 PF02449 Beta-galactosidase C1C92_18795 PF08532 Beta-galactosidase trimerisation domain C1C92_18800 PF07745 Glycosyl hydrolase family 53 C1C92_18805 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_18810 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_18815 PF13416 Bacterial extracellular solute-binding protein C1C92_18820 PF17912 MalK OB fold domain C1C92_18820 PF00005 ABC transporter C1C92_18825 PF00672 HAMP domain C1C92_18825 PF02743 Cache domain C1C92_18825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_18835 PF07745 Glycosyl hydrolase family 53 C1C92_18840 PF02264 LamB porin C1C92_18850 PF16363 GDP-mannose 4,6 dehydratase C1C92_18855 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain C1C92_18855 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain C1C92_18860 PF00288 GHMP kinases N terminal domain C1C92_18860 PF10509 Galactokinase galactose-binding signature C1C92_18860 PF08544 GHMP kinases C terminal C1C92_18880 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C1C92_18880 PF18766 SWI2/SNF2 ATPase C1C92_18880 PF11867 Domain of unknown function (DUF3387) C1C92_18885 PF13087 AAA domain C1C92_18885 PF13086 AAA domain C1C92_18885 PF13195 Protein of unknown function (DUF4011) C1C92_18885 PF13087 AAA domain C1C92_18885 PF13086 AAA domain C1C92_18885 PF13195 Protein of unknown function (DUF4011) C1C92_18905 PF12161 HsdM N-terminal domain C1C92_18905 PF02384 N-6 DNA Methylase C1C92_18915 PF02146 Sir2 family C1C92_18935 PF00929 Exonuclease C1C92_18935 PF08411 Exonuclease C-terminal C1C92_18950 PF03788 LrgA family C1C92_18955 PF04172 LrgB-like family C1C92_18960 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region C1C92_18960 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C1C92_18965 PF00501 AMP-binding enzyme C1C92_18970 PF08891 YfcL protein C1C92_18980 PF03741 Integral membrane protein TerC family C1C92_18985 PF00793 DAHP synthetase I family C1C92_18990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C1C92_18995 PF00266 Aminotransferase class-V C1C92_19005 PF01012 Electron transfer flavoprotein domain C1C92_19015 PF01544 CorA-like Mg2+ transporter protein C1C92_19020 PF11143 Protein of unknown function (DUF2919) C1C92_19035 PF07715 TonB-dependent Receptor Plug Domain C1C92_19035 PF00593 TonB dependent receptor C1C92_19040 PF01032 FecCD transport family C1C92_19045 PF01032 FecCD transport family C1C92_19050 PF00005 ABC transporter C1C92_19055 PF17837 4'-phosphopantetheinyl transferase N-terminal domain C1C92_19055 PF01648 4'-phosphopantetheinyl transferase superfamily C1C92_19060 PF01497 Periplasmic binding protein C1C92_19065 PF16197 Ketoacyl-synthetase C-terminal extension C1C92_19065 PF02801 Beta-ketoacyl synthase, C-terminal domain C1C92_19065 PF00501 AMP-binding enzyme C1C92_19065 PF00550 Phosphopantetheine attachment site C1C92_19065 PF08659 KR domain C1C92_19065 PF14765 Polyketide synthase dehydratase C1C92_19065 PF00668 Condensation domain C1C92_19065 PF13193 AMP-binding enzyme C-terminal domain C1C92_19065 PF00109 Beta-ketoacyl synthase, N-terminal domain C1C92_19070 PF00550 Phosphopantetheine attachment site C1C92_19070 PF07993 Male sterility protein C1C92_19070 PF13193 AMP-binding enzyme C-terminal domain C1C92_19070 PF00668 Condensation domain C1C92_19070 PF00501 AMP-binding enzyme C1C92_19080 PF00501 AMP-binding enzyme C1C92_19080 PF13193 AMP-binding enzyme C-terminal domain C1C92_19080 PF00668 Condensation domain C1C92_19080 PF00550 Phosphopantetheine attachment site C1C92_19080 PF00975 Thioesterase domain C1C92_19085 PF00857 Isochorismatase family C1C92_19085 PF00550 Phosphopantetheine attachment site C1C92_19090 PF13193 AMP-binding enzyme C-terminal domain C1C92_19090 PF00501 AMP-binding enzyme C1C92_19095 PF00425 chorismate binding enzyme C1C92_19100 PF07273 Protein of unknown function (DUF1439) C1C92_19110 PF00483 Nucleotidyl transferase C1C92_19115 PF00990 Diguanylate cyclase, GGDEF domain C1C92_19115 PF00563 EAL domain C1C92_19115 PF03707 Bacterial signalling protein N terminal repeat C1C92_19130 PF00672 HAMP domain C1C92_19130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_19130 PF17200 Single Cache domain 2 C1C92_19135 PF00294 pfkB family carbohydrate kinase C1C92_19140 PF01124 MAPEG family C1C92_19145 PF00762 Ferrochelatase C1C92_19150 PF05191 Adenylate kinase, active site lid C1C92_19155 PF00183 Hsp90 protein C1C92_19155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_19165 PF02132 RecR protein C1C92_19165 PF13662 Toprim domain C1C92_19170 PF07503 HypF finger C1C92_19170 PF17788 HypF Kae1-like domain C1C92_19170 PF00708 Acylphosphatase C1C92_19170 PF01300 Telomere recombination C1C92_19175 PF01455 HupF/HypC family C1C92_19180 PF01924 Hydrogenase formation hypA family C1C92_19185 PF02769 AIR synthase related protein, C-terminal domain C1C92_19185 PF00586 AIR synthase related protein, N-terminal domain C1C92_19190 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1C92_19195 PF02492 CobW/HypB/UreG, nucleotide-binding domain C1C92_19200 PF00005 ABC transporter C1C92_19210 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_19210 PF12911 N-terminal TM domain of oligopeptide transport permease C C1C92_19215 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_19220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_19225 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE C1C92_19230 PF01750 Hydrogenase maturation protease C1C92_19235 PF00374 Nickel-dependent hydrogenase C1C92_19240 PF03916 Polysulphide reductase, NrfD C1C92_19245 PF13247 4Fe-4S dicluster domain C1C92_19250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C1C92_19250 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal C1C92_19255 PF00842 Alanine racemase, C-terminal domain C1C92_19255 PF01168 Alanine racemase, N-terminal domain C1C92_19265 PF00916 Sulfate permease family C1C92_19265 PF01740 STAS domain C1C92_19285 PF14403 Circularly permuted ATP-grasp type 2 C1C92_19290 PF04168 A predicted alpha-helical domain with a conserved ER motif. C1C92_19290 PF14403 Circularly permuted ATP-grasp type 2 C1C92_19320 PF03239 Iron permease FTR1 family C1C92_19325 PF01593 Flavin containing amine oxidoreductase C1C92_19345 PF07690 Major Facilitator Superfamily C1C92_19355 PF03600 Citrate transporter C1C92_19365 PF00005 ABC transporter C1C92_19385 PF02913 FAD linked oxidases, C-terminal domain C1C92_19385 PF01565 FAD binding domain C1C92_19390 PF02589 LUD domain C1C92_19395 PF11870 Domain of unknown function (DUF3390) C1C92_19395 PF02589 LUD domain C1C92_19395 PF13183 4Fe-4S dicluster domain C1C92_19400 PF02754 Cysteine-rich domain C1C92_19405 PF02652 L-lactate permease C1C92_19410 PF03466 LysR substrate binding domain C1C92_19410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_19435 PF01625 Peptide methionine sulfoxide reductase C1C92_19440 PF00696 Amino acid kinase family C1C92_19440 PF00583 Acetyltransferase (GNAT) family C1C92_19445 PF00696 Amino acid kinase family C1C92_19445 PF01842 ACT domain C1C92_19455 PF00884 Sulfatase C1C92_19460 PF01906 Putative heavy-metal-binding C1C92_19470 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_19475 PF05728 Uncharacterised protein family (UPF0227) C1C92_19480 PF01432 Peptidase family M3 C1C92_19480 PF08439 Oligopeptidase F C1C92_19485 PF08439 Oligopeptidase F C1C92_19485 PF01432 Peptidase family M3 C1C92_19500 PF13426 PAS domain C1C92_19500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_19500 PF08447 PAS fold C1C92_19505 PF07549 SecD/SecF GG Motif C1C92_19505 PF02355 Protein export membrane protein C1C92_19510 PF13721 SecD export protein N-terminal TM region C1C92_19510 PF02355 Protein export membrane protein C1C92_19510 PF07549 SecD/SecF GG Motif C1C92_19545 PF01230 HIT domain C1C92_19550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_19550 PF00672 HAMP domain C1C92_19560 PF01979 Amidohydrolase family C1C92_19580 PF00375 Sodium:dicarboxylate symporter family C1C92_19590 PF01168 Alanine racemase, N-terminal domain C1C92_19590 PF00842 Alanine racemase, C-terminal domain C1C92_19595 PF03741 Integral membrane protein TerC family C1C92_19600 PF00005 ABC transporter C1C92_19600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_19605 PF00005 ABC transporter C1C92_19605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C1C92_19610 PF12911 N-terminal TM domain of oligopeptide transport permease C C1C92_19610 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_19615 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_19620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C1C92_19625 PF01914 MarC family integral membrane protein C1C92_19630 PF00171 Aldehyde dehydrogenase family C1C92_19630 PF00465 Iron-containing alcohol dehydrogenase C1C92_19635 PF00072 Response regulator receiver domain C1C92_19645 PF00072 Response regulator receiver domain C1C92_19645 PF04397 LytTr DNA-binding domain C1C92_19650 PF02554 Carbon starvation protein CstA C1C92_19655 PF12794 Mechanosensitive ion channel inner membrane domain 1 C1C92_19655 PF12795 Mechanosensitive ion channel porin domain C1C92_19655 PF00924 Mechanosensitive ion channel C1C92_19660 PF11742 Protein of unknown function (DUF3302) C1C92_19665 PF00529 HlyD membrane-fusion protein of T1SS C1C92_19665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C1C92_19670 PF04851 Type III restriction enzyme, res subunit C1C92_19670 PF00271 Helicase conserved C-terminal domain C1C92_19680 PF00462 Glutaredoxin C1C92_19690 PF00155 Aminotransferase class I and II C1C92_19695 PF03606 C4-dicarboxylate anaerobic carrier C1C92_19700 PF12241 Trans-2-enoyl-CoA reductase catalytic region C1C92_19700 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase C1C92_19700 PF07055 Enoyl reductase FAD binding domain C1C92_19710 PF13426 PAS domain C1C92_19710 PF08447 PAS fold C1C92_19710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_19715 PF00892 EamA-like transporter family C1C92_19720 PF02508 Rnf-Nqr subunit, membrane protein C1C92_19725 PF04060 Putative Fe-S cluster C1C92_19730 PF13375 RnfC Barrel sandwich hybrid domain C1C92_19730 PF10531 SLBB domain C1C92_19730 PF12838 4Fe-4S dicluster domain C1C92_19730 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C1C92_19735 PF03116 NQR2, RnfD, RnfE family C1C92_19740 PF04205 FMN-binding domain C1C92_19745 PF02508 Rnf-Nqr subunit, membrane protein C1C92_19750 PF00633 Helix-hairpin-helix motif C1C92_19750 PF00730 HhH-GPD superfamily base excision DNA repair protein C1C92_19750 PF10576 Iron-sulfur binding domain of endonuclease III C1C92_19755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C1C92_19760 PF12729 Four helix bundle sensory module for signal transduction C1C92_19760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_19760 PF00672 HAMP domain C1C92_19765 PF02535 ZIP Zinc transporter C1C92_19775 PF01048 Phosphorylase superfamily C1C92_19785 PF01497 Periplasmic binding protein C1C92_19790 PF02719 Polysaccharide biosynthesis protein C1C92_19795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C1C92_19805 PF02348 Cytidylyltransferase C1C92_19810 PF00202 Aminotransferase class-III C1C92_19825 PF08666 SAF domain C1C92_19825 PF03102 NeuB family C1C92_19845 PF02561 Flagellar protein FliS C1C92_19850 PF07196 Flagellin hook IN motif C1C92_19850 PF07195 Flagellar hook-associated protein 2 C-terminus C1C92_19850 PF02465 Flagellar hook-associated protein 2 N-terminus C1C92_19860 PF00669 Bacterial flagellin N-terminal helical region C1C92_19860 PF07196 Flagellin hook IN motif C1C92_19860 PF00700 Bacterial flagellin C-terminal helical region C1C92_19865 PF07196 Flagellin hook IN motif C1C92_19865 PF00669 Bacterial flagellin N-terminal helical region C1C92_19865 PF00700 Bacterial flagellin C-terminal helical region C1C92_19870 PF00669 Bacterial flagellin N-terminal helical region C1C92_19870 PF07196 Flagellin hook IN motif C1C92_19870 PF00700 Bacterial flagellin C-terminal helical region C1C92_19875 PF03458 UPF0126 domain C1C92_19885 PF02926 THUMP domain C1C92_19885 PF02568 Thiamine biosynthesis protein (ThiI) C1C92_19895 PF00905 Penicillin binding protein transpeptidase domain C1C92_19895 PF00912 Transglycosylase C1C92_19895 PF06832 Penicillin-Binding Protein C-terminus Family C1C92_19900 PF17962 Bacterial macroglobulin domain 6 C1C92_19900 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain C1C92_19900 PF11974 Bacterial alpha-2-macroglobulin MG3 domain C1C92_19900 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain C1C92_19900 PF07703 Alpha-2-macroglobulin bait region domain C1C92_19900 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain C1C92_19900 PF01835 MG2 domain C1C92_19900 PF00207 Alpha-2-macroglobulin family C1C92_19900 PF07678 A-macroglobulin TED domain C1C92_19910 PF03707 Bacterial signalling protein N terminal repeat C1C92_19910 PF00990 Diguanylate cyclase, GGDEF domain C1C92_19910 PF00563 EAL domain C1C92_19915 PF04055 Radical SAM superfamily C1C92_19925 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_19930 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_19935 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_19940 PF00005 ABC transporter C1C92_19945 PF03956 Lysine exporter LysO C1C92_19950 PF01979 Amidohydrolase family C1C92_19955 PF00497 Bacterial extracellular solute-binding proteins, family 3 C1C92_19965 PF04336 Acyl carrier protein phosphodiesterase C1C92_19980 PF03960 ArsC family C1C92_19985 PF00578 AhpC/TSA family C1C92_19990 PF01435 Peptidase family M48 C1C92_19990 PF13181 Tetratricopeptide repeat C1C92_19995 PF01206 Sulfurtransferase TusA C1C92_20000 PF01594 AI-2E family transporter C1C92_20010 PF00561 alpha/beta hydrolase fold C1C92_20015 PF03976 Polyphosphate kinase 2 (PPK2) C1C92_20020 PF00005 ABC transporter C1C92_20020 PF08402 TOBE domain C1C92_20025 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_20030 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_20030 PF14785 Maltose transport system permease protein MalF P2 domain C1C92_20035 PF01547 Bacterial extracellular solute-binding protein C1C92_20040 PF04245 37-kD nucleoid-associated bacterial protein C1C92_20045 PF07208 Protein of unknown function (DUF1414) C1C92_20050 PF00884 Sulfatase C1C92_20050 PF11893 Domain of unknown function (DUF3413) C1C92_20055 PF07715 TonB-dependent Receptor Plug Domain C1C92_20055 PF00593 TonB dependent receptor C1C92_20060 PF00326 Prolyl oligopeptidase family C1C92_20060 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain C1C92_20080 PF03974 Ecotin C1C92_20085 PF04219 Protein of unknown function, DUF C1C92_20090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_20090 PF03466 LysR substrate binding domain C1C92_20095 PF02153 Prephenate dehydrogenase C1C92_20095 PF01817 Chorismate mutase type II C1C92_20100 PF00793 DAHP synthetase I family C1C92_20105 PF03009 Glycerophosphoryl diester phosphodiesterase family C1C92_20110 PF01266 FAD dependent oxidoreductase C1C92_20110 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C1C92_20115 PF08220 DeoR-like helix-turn-helix domain C1C92_20115 PF00455 DeoR C terminal sensor domain C1C92_20120 PF07690 Major Facilitator Superfamily C1C92_20125 PF00230 Major intrinsic protein C1C92_20130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C1C92_20130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C1C92_20135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_20135 PF03466 LysR substrate binding domain C1C92_20155 PF00248 Aldo/keto reductase family C1C92_20160 PF07690 Major Facilitator Superfamily C1C92_20180 PF02322 Cytochrome bd terminal oxidase subunit II C1C92_20185 PF01654 Cytochrome bd terminal oxidase subunit I C1C92_20190 PF00155 Aminotransferase class I and II C1C92_20190 PF00392 Bacterial regulatory proteins, gntR family C1C92_20200 PF04391 Protein of unknown function (DUF533) C1C92_20210 PF10689 Protein of unknown function (DUF2496) C1C92_20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_20220 PF03466 LysR substrate binding domain C1C92_20230 PF07690 Major Facilitator Superfamily C1C92_20235 PF01479 S4 domain C1C92_20235 PF00849 RNA pseudouridylate synthase C1C92_20240 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C1C92_20240 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C1C92_20250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C1C92_20260 PF00271 Helicase conserved C-terminal domain C1C92_20260 PF04851 Type III restriction enzyme, res subunit C1C92_20265 PF00300 Histidine phosphatase superfamily (branch 1) C1C92_20270 PF00990 Diguanylate cyclase, GGDEF domain C1C92_20270 PF03707 Bacterial signalling protein N terminal repeat C1C92_20270 PF00563 EAL domain C1C92_20285 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C1C92_20285 PF17944 Arginine decarboxylase C-terminal helical extension C1C92_20285 PF17810 Arginine decarboxylase helical bundle domain C1C92_20300 PF01546 Peptidase family M20/M25/M40 C1C92_20300 PF07687 Peptidase dimerisation domain C1C92_20325 PF04264 YceI-like domain C1C92_20330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_20330 PF03466 LysR substrate binding domain C1C92_20340 PF01268 Formate--tetrahydrofolate ligase C1C92_20345 PF17200 Single Cache domain 2 C1C92_20345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_20345 PF00672 HAMP domain C1C92_20350 PF01227 GTP cyclohydrolase I C1C92_20355 PF00994 Probable molybdopterin binding domain C1C92_20355 PF03454 MoeA C-terminal region (domain IV) C1C92_20355 PF03453 MoeA N-terminal region (domain I and II) C1C92_20360 PF00899 ThiF family C1C92_20370 PF06406 StbA protein C1C92_20375 PF12697 Alpha/beta hydrolase family C1C92_20380 PF03459 TOBE domain C1C92_20380 PF00005 ABC transporter C1C92_20385 PF00528 Binding-protein-dependent transport system inner membrane component C1C92_20395 PF02391 MoaE protein C1C92_20400 PF02597 ThiS family C1C92_20405 PF01967 MoaC family C1C92_20410 PF00994 Probable molybdopterin binding domain C1C92_20415 PF03264 NapC/NirT cytochrome c family, N-terminal region C1C92_20420 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) C1C92_20425 PF12801 4Fe-4S binding domain C1C92_20425 PF13237 4Fe-4S dicluster domain C1C92_20430 PF12838 4Fe-4S dicluster domain C1C92_20430 PF12800 4Fe-4S binding domain C1C92_20435 PF00384 Molybdopterin oxidoreductase C1C92_20435 PF01568 Molydopterin dinucleotide binding domain C1C92_20435 PF10518 TAT (twin-arginine translocation) pathway signal sequence C1C92_20435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C1C92_20445 PF12800 4Fe-4S binding domain C1C92_20445 PF00037 4Fe-4S binding domain C1C92_20445 PF13187 4Fe-4S dicluster domain C1C92_20450 PF04055 Radical SAM superfamily C1C92_20450 PF06463 Molybdenum Cofactor Synthesis C C1C92_20455 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C1C92_20455 PF00672 HAMP domain C1C92_20455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_20455 PF07730 Histidine kinase C1C92_20460 PF00196 Bacterial regulatory proteins, luxR family C1C92_20460 PF00072 Response regulator receiver domain C1C92_20475 PF00512 His Kinase A (phospho-acceptor) domain C1C92_20475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_20475 PF09456 RcsC Alpha-Beta-Loop (ABL) C1C92_20475 PF00072 Response regulator receiver domain C1C92_20485 PF01933 Uncharacterised protein family UPF0052 C1C92_20495 PF13230 Glutamine amidotransferases class-II C1C92_20500 PF13580 SIS domain C1C92_20505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C1C92_20505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C1C92_20505 PF09317 Domain of unknown function (DUF1974) C1C92_20505 PF02770 Acyl-CoA dehydrogenase, middle domain C1C92_20510 PF11849 Domain of unknown function (DUF3369) C1C92_20520 PF00929 Exonuclease C1C92_20525 PF00075 RNase H C1C92_20530 PF08241 Methyltransferase domain C1C92_20535 PF00753 Metallo-beta-lactamase superfamily C1C92_20535 PF16123 Hydroxyacylglutathione hydrolase C-terminus C1C92_20540 PF01464 Transglycosylase SLT domain C1C92_20540 PF01476 LysM domain C1C92_20545 PF03372 Endonuclease/Exonuclease/phosphatase family C1C92_20555 PF03061 Thioesterase superfamily C1C92_20565 PF00356 Bacterial regulatory proteins, lacI family C1C92_20570 PF01464 Transglycosylase SLT domain C1C92_20570 PF14718 Soluble lytic murein transglycosylase L domain C1C92_20575 PF00990 Diguanylate cyclase, GGDEF domain C1C92_20575 PF00563 EAL domain C1C92_20575 PF03707 Bacterial signalling protein N terminal repeat C1C92_20580 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C1C92_20605 PF04357 TamB, inner membrane protein subunit of TAM complex C1C92_20610 PF17243 POTRA domain TamA domain 1 C1C92_20610 PF07244 Surface antigen variable number repeat C1C92_20610 PF01103 Surface antigen C1C92_20630 PF02627 Carboxymuconolactone decarboxylase family C1C92_20640 PF13416 Bacterial extracellular solute-binding protein C1C92_20655 PF01066 CDP-alcohol phosphatidyltransferase C1C92_20660 PF13406 Transglycosylase SLT domain C1C92_20665 PF01047 MarR family C1C92_20675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C1C92_20675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C1C92_20675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C1C92_20675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C1C92_20680 PF03925 SeqA protein C-terminal domain C1C92_20680 PF17206 SeqA protein N-terminal domain C1C92_20695 PF01402 Ribbon-helix-helix protein, copG family C1C92_20700 PF00258 Flavodoxin C1C92_20710 PF01475 Ferric uptake regulator family C1C92_20715 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C1C92_20715 PF00749 tRNA synthetases class I (E and Q), catalytic domain C1C92_20720 PF03173 Putative carbohydrate binding domain C1C92_20720 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain C1C92_20720 PF00728 Glycosyl hydrolase family 20, catalytic domain C1C92_20720 PF02838 Glycosyl hydrolase family 20, domain 2 C1C92_20725 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C1C92_20725 PF02378 Phosphotransferase system, EIIC C1C92_20725 PF00367 phosphotransferase system, EIIB C1C92_20730 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase C1C92_20735 PF01979 Amidohydrolase family C1C92_20740 PF00480 ROK family C1C92_20740 PF01047 MarR family C1C92_20745 PF08019 Phosphoethanolamine transferase EptA/EptB C1C92_20745 PF00884 Sulfatase C1C92_20750 PF01709 Transcriptional regulator C1C92_20755 PF02938 GAD domain C1C92_20755 PF00152 tRNA synthetases class II (D, K and N) C1C92_20755 PF01336 OB-fold nucleic acid binding domain C1C92_20765 PF01904 Protein of unknown function DUF72 C1C92_20770 PF13649 Methyltransferase domain C1C92_20775 PF08003 Protein of unknown function (DUF1698) C1C92_20795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_20795 PF03466 LysR substrate binding domain C1C92_20800 PF00877 NlpC/P60 family C1C92_20810 PF00171 Aldehyde dehydrogenase family C1C92_20815 PF00440 Bacterial regulatory proteins, tetR family C1C92_20815 PF08359 YsiA-like protein, C-terminal region C1C92_20825 PF00465 Iron-containing alcohol dehydrogenase C1C92_20830 PF00291 Pyridoxal-phosphate dependent enzyme C1C92_20850 PF01554 MatE C1C92_20860 PF04325 Protein of unknown function (DUF465) C1C92_20870 PF10371 Domain of unknown function C1C92_20870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C1C92_20870 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg C1C92_20870 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase C1C92_20870 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II C1C92_20875 PF07992 Pyridine nucleotide-disulphide oxidoreductase C1C92_20875 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C1C92_20875 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C1C92_20880 PF03476 MOSC N-terminal beta barrel domain C1C92_20880 PF00111 2Fe-2S iron-sulfur cluster binding domain C1C92_20880 PF00111 2Fe-2S iron-sulfur cluster binding domain C1C92_20880 PF03473 MOSC domain C1C92_20880 PF03476 MOSC N-terminal beta barrel domain C1C92_20880 PF03473 MOSC domain C1C92_20885 PF01435 Peptidase family M48 C1C92_20895 PF08241 Methyltransferase domain C1C92_20895 PF12697 Alpha/beta hydrolase family C1C92_20900 PF00155 Aminotransferase class I and II C1C92_20905 PF06968 Biotin and Thiamin Synthesis associated domain C1C92_20905 PF04055 Radical SAM superfamily C1C92_20925 PF01336 OB-fold nucleic acid binding domain C1C92_20925 PF00152 tRNA synthetases class II (D, K and N) C1C92_20930 PF03605 Anaerobic c4-dicarboxylate membrane transporter C1C92_20945 PF03606 C4-dicarboxylate anaerobic carrier C1C92_20955 PF03960 ArsC family C1C92_20960 PF07687 Peptidase dimerisation domain C1C92_20960 PF01546 Peptidase family M20/M25/M40 C1C92_20965 PF02557 D-alanyl-D-alanine carboxypeptidase C1C92_20975 PF02080 TrkA-C domain C1C92_20975 PF03471 Transporter associated domain C1C92_20975 PF00999 Sodium/hydrogen exchanger family C1C92_20985 PF01810 LysE type translocator C1C92_20990 PF00672 HAMP domain C1C92_20990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C1C92_20995 PF07509 Protein of unknown function (DUF1523) C1C92_21015 PF01156 Inosine-uridine preferring nucleoside hydrolase C1C92_21020 PF00849 RNA pseudouridylate synthase C1C92_21025 PF01048 Phosphorylase superfamily C1C92_21030 PF00465 Iron-containing alcohol dehydrogenase C1C92_21035 PF04355 SmpA / OmlA family C1C92_21040 PF13460 NAD(P)H-binding C1C92_21050 PF03364 Polyketide cyclase / dehydrase and lipid transport C1C92_21055 PF01668 SmpB protein C1C92_21300 PF03796 DnaB-like helicase C terminal domain C1C92_21300 PF00772 DnaB-like helicase N terminal domain C1C92_21365 PF06630 Enterobacterial exodeoxyribonuclease VIII C1C92_21365 PF12684 PDDEXK-like domain of unknown function (DUF3799) C1C92_21395 PF04381 Putative exonuclease, RdgC C1C92_21435 PF12167 Arm DNA-binding domain C1C92_21435 PF00589 Phage integrase family C1C92_21440 PF00589 Phage integrase family C1C92_21440 PF13356 Arm DNA-binding domain C1C92_21445 PF00816 H-NS histone family C1C92_21480 PF00486 Transcriptional regulatory protein, C terminal C1C92_21480 PF00072 Response regulator receiver domain C1C92_21485 PF13614 AAA domain C1C92_21485 PF13807 G-rich domain on putative tyrosine kinase C1C92_21485 PF02706 Chain length determinant protein C1C92_21490 PF01451 Low molecular weight phosphotyrosine protein phosphatase C1C92_21495 PF02563 Polysaccharide biosynthesis/export protein C1C92_21495 PF10531 SLBB domain C1C92_21495 PF18412 Outer-membrane lipoprotein Wza C-terminal domain C1C92_21555 PF05598 Transposase domain (DUF772) C1C92_21555 PF01609 Transposase DDE domain C1C92_21565 PF00953 Glycosyl transferase family 4 C1C92_21590 PF00691 OmpA family C1C92_21590 PF01389 OmpA-like transmembrane domain C1C92_21605 PF00816 H-NS histone family C1C92_21615 PF13148 Protein of unknown function (DUF3987) C1C92_21635 PF09588 YqaJ-like viral recombinase domain C1C92_21670 PF04002 RadC-like JAB domain C1C92_21720 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A C1C92_21735 PF04471 Restriction endonuclease C1C92_21735 PF14338 Mrr N-terminal domain C1C92_21745 PF18766 SWI2/SNF2 ATPase C1C92_21745 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C1C92_21745 PF11867 Domain of unknown function (DUF3387) C1C92_21755 PF02463 RecF/RecN/SMC N terminal domain C1C92_21760 PF00580 UvrD/REP helicase N-terminal domain C1C92_21760 PF13361 UvrD-like helicase C-terminal domain C1C92_21775 PF12161 HsdM N-terminal domain C1C92_21775 PF02384 N-6 DNA Methylase C1C92_21790 PF00717 Peptidase S24-like C1C92_21795 PF00817 impB/mucB/samB family C1C92_21795 PF11799 impB/mucB/samB family C-terminal domain C1C92_21795 PF13438 Domain of unknown function (DUF4113) C1C92_21795 PF11798 IMS family HHH motif C1C92_21805 PF01081 KDPG and KHG aldolase C1C92_21820 PF13508 Acetyltransferase (GNAT) domain C1C92_21840 PF01546 Peptidase family M20/M25/M40 C1C92_21845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C1C92_21845 PF03466 LysR substrate binding domain C1C92_21850 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C1C92_21850 PF01243 Pyridoxamine 5'-phosphate oxidase C1C92_21865 PF01029 NusB family C1C92_21865 PF01189 16S rRNA methyltransferase RsmB/F C1C92_21870 PF00462 Glutaredoxin C1C92_21875 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C1C92_21875 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C1C92_21880 PF04333 MlaA lipoprotein C1C92_21890 PF03918 Cytochrome C biogenesis protein C1C92_21895 PF08534 Redoxin C1C92_21900 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal C1C92_21900 PF01578 Cytochrome C assembly protein C1C92_21905 PF03100 CcmE C1C92_21910 PF04995 Heme exporter protein D (CcmD) C1C92_21915 PF01578 Cytochrome C assembly protein C1C92_21920 PF03379 CcmB protein C1C92_21925 PF00005 ABC transporter C1C92_21935 PF01584 CheW-like domain C1C92_21945 PF13614 AAA domain C1C92_21950 PF00691 OmpA family C1C92_21950 PF13677 Membrane MotB of proton-channel complex MotA/MotB C1C92_21955 PF01618 MotA/TolQ/ExbB proton channel family C1C92_21960 PF00072 Response regulator receiver domain C1C92_21960 PF01339 CheB methylesterase C1C92_21965 PF01584 CheW-like domain C1C92_21965 PF07194 P2 response regulator binding domain C1C92_21965 PF02895 Signal transducing histidine kinase, homodimeric domain C1C92_21965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C1C92_21965 PF01627 Hpt domain C1C92_21970 PF04344 Chemotaxis phosphatase, CheZ C1C92_21975 PF00072 Response regulator receiver domain C1C92_21980 PF04542 Sigma-70 region 2 C1C92_21980 PF04539 Sigma-70 region 3 C1C92_21980 PF04545 Sigma-70, region 4 C1C92_21985 PF10609 NUBPL iron-transfer P-loop NTPase C1C92_21990 PF00448 SRP54-type protein, GTPase domain C1C92_21995 PF00771 FHIPEP family C1C92_22000 PF01312 FlhB HrpN YscU SpaS Family C1C92_22005 PF01311 Bacterial export proteins, family 1 C1C92_22010 PF01313 Bacterial export proteins, family 3 C1C92_22015 PF00813 FliP family C1C92_22020 PF04347 Flagellar biosynthesis protein, FliO C1C92_22030 PF02154 Flagellar motor switch protein FliM C1C92_22030 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C1C92_22075 PF02049 Flagellar hook-basal body complex protein FliE