locus-tag class description NRK98_00080 PF01381 Helix-turn-helix NRK98_00080 PF00717 Peptidase S24-like NRK98_00090 PF02899 Phage integrase, N-terminal SAM-like domain NRK98_00090 PF00589 Phage integrase family NRK98_00100 PF00909 Ammonium Transporter Family NRK98_00105 PF01938 TRAM domain NRK98_00105 PF05958 tRNA (Uracil-5-)-methyltransferase NRK98_00110 PF00583 Acetyltransferase (GNAT) family NRK98_00120 PF07963 Prokaryotic N-terminal methylation motif NRK98_00125 PF01026 TatD related DNase NRK98_00130 PF01773 Na+ dependent nucleoside transporter N-terminus NRK98_00130 PF07662 Na+ dependent nucleoside transporter C-terminus NRK98_00130 PF07670 Nucleoside recognition NRK98_00140 PF01791 DeoC/LacD family aldolase NRK98_00145 PF02885 Glycosyl transferase family, helical bundle domain NRK98_00145 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NRK98_00145 PF00591 Glycosyl transferase family, a/b domain NRK98_00150 PF01676 Metalloenzyme superfamily NRK98_00155 PF01048 Phosphorylase superfamily NRK98_00160 PF08448 PAS fold NRK98_00160 PF13426 PAS domain NRK98_00160 PF00990 Diguanylate cyclase, GGDEF domain NRK98_00160 PF05231 MASE1 NRK98_00160 PF08447 PAS fold NRK98_00160 PF00563 EAL domain NRK98_00170 PF18429 Domain of unknown function (DUF5609) NRK98_00185 PF18073 Rubredoxin metal binding domain NRK98_00190 PF07238 PilZ domain NRK98_00195 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NRK98_00205 PF00216 Bacterial DNA-binding protein NRK98_00220 PF01207 Dihydrouridine synthase (Dus) NRK98_00225 PF01475 Ferric uptake regulator family NRK98_00240 PF05525 Branched-chain amino acid transport protein NRK98_00245 PF05525 Branched-chain amino acid transport protein NRK98_00250 PF05175 Methyltransferase small domain NRK98_00255 PF00271 Helicase conserved C-terminal domain NRK98_00255 PF00270 DEAD/DEAH box helicase NRK98_00260 PF03883 Peroxide stress protein YaaA NRK98_00265 PF00437 Type II/IV secretion system protein NRK98_00270 PF00437 Type II/IV secretion system protein NRK98_00275 PF01168 Alanine racemase, N-terminal domain NRK98_00280 PF03807 NADP oxidoreductase coenzyme F420-dependent NRK98_00280 PF14748 Pyrroline-5-carboxylate reductase dimerisation NRK98_00285 PF02325 YGGT family NRK98_00290 PF02594 Uncharacterised ACR, YggU family COG1872 NRK98_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_00315 PF00132 Bacterial transferase hexapeptide (six repeats) NRK98_00320 PF10952 Protein of unknown function (DUF2753) NRK98_00325 PF00378 Enoyl-CoA hydratase/isomerase NRK98_00340 PF00106 short chain dehydrogenase NRK98_00345 PF04073 Aminoacyl-tRNA editing domain NRK98_00345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRK98_00345 PF03129 Anticodon binding domain NRK98_00350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_00350 PF00672 HAMP domain NRK98_00355 PF01330 RuvA N terminal domain NRK98_00355 PF07499 RuvA, C-terminal domain NRK98_00360 PF05496 Holliday junction DNA helicase RuvB P-loop domain NRK98_00360 PF05491 RuvB C-terminal winged helix domain NRK98_00360 PF17864 RuvB AAA lid domain NRK98_00365 PF01654 Cytochrome bd terminal oxidase subunit I NRK98_00370 PF02322 Cytochrome bd terminal oxidase subunit II NRK98_00375 PF08173 Membrane bound YbgT-like protein NRK98_00380 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) NRK98_00385 PF03061 Thioesterase superfamily NRK98_00390 PF01618 MotA/TolQ/ExbB proton channel family NRK98_00395 PF02472 Biopolymer transport protein ExbD/TolR NRK98_00405 PF07676 WD40-like Beta Propeller Repeat NRK98_00405 PF04052 TolB amino-terminal domain NRK98_00410 PF00691 OmpA family NRK98_00415 PF13174 Tetratricopeptide repeat NRK98_00415 PF16331 TolA binding protein trimerisation NRK98_00490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_00490 PF00672 HAMP domain NRK98_00495 PF02445 Quinolinate synthetase A protein NRK98_00500 PF01263 Aldose 1-epimerase NRK98_00505 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRK98_00505 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRK98_00510 PF02446 4-alpha-glucanotransferase NRK98_00515 PF00128 Alpha amylase, catalytic domain NRK98_00515 PF02806 Alpha amylase, C-terminal all-beta domain NRK98_00515 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRK98_00520 PF00128 Alpha amylase, catalytic domain NRK98_00520 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRK98_00525 PF01641 SelR domain NRK98_00535 PF00293 NUDIX domain NRK98_00540 PF00107 Zinc-binding dehydrogenase NRK98_00540 PF16884 N-terminal domain of oxidoreductase NRK98_00545 PF01047 MarR family NRK98_00560 PF01037 Lrp/AsnC ligand binding domain NRK98_00570 PF07690 Major Facilitator Superfamily NRK98_00590 PF00209 Sodium:neurotransmitter symporter family NRK98_00600 PF00209 Sodium:neurotransmitter symporter family NRK98_00625 PF00392 Bacterial regulatory proteins, gntR family NRK98_00625 PF00155 Aminotransferase class I and II NRK98_00635 PF01810 LysE type translocator NRK98_00640 PF01177 Asp/Glu/Hydantoin racemase NRK98_00645 PF07732 Multicopper oxidase NRK98_00645 PF07731 Multicopper oxidase NRK98_00645 PF00394 Multicopper oxidase NRK98_00655 PF04074 YhcH/YjgK/YiaL NRK98_00660 PF00871 Acetokinase family NRK98_00665 PF00924 Mechanosensitive ion channel NRK98_00670 PF03734 L,D-transpeptidase catalytic domain NRK98_00670 PF17969 L,D-transpeptidase C-terminal domain NRK98_00675 PF00474 Sodium:solute symporter family NRK98_00715 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NRK98_00725 PF00005 ABC transporter NRK98_00725 PF12848 ABC transporter NRK98_00730 PF01380 SIS domain NRK98_00730 PF00571 CBS domain NRK98_00735 PF01957 NfeD-like C-terminal, partner-binding NRK98_00740 PF16200 C-terminal region of band_7 NRK98_00740 PF01145 SPFH domain / Band 7 family NRK98_00745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRK98_00745 PF14824 Sirohaem biosynthesis protein central NRK98_00745 PF10414 Sirohaem synthase dimerisation region NRK98_00750 PF01507 Phosphoadenosine phosphosulfate reductase family NRK98_00755 PF00009 Elongation factor Tu GTP binding domain NRK98_00760 PF02080 TrkA-C domain NRK98_00760 PF03600 Citrate transporter NRK98_00770 PF13289 SIR2-like domain NRK98_00775 PF08447 PAS fold NRK98_00775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_00795 PF00005 ABC transporter NRK98_00810 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NRK98_00825 PF00719 Inorganic pyrophosphatase NRK98_00830 PF01225 Mur ligase family, catalytic domain NRK98_00830 PF08245 Mur ligase middle domain NRK98_00830 PF02875 Mur ligase family, glutamate ligase domain NRK98_00835 PF02441 Flavoprotein NRK98_00840 PF00440 Bacterial regulatory proteins, tetR family NRK98_00845 PF00156 Phosphoribosyl transferase domain NRK98_00850 PF00005 ABC transporter NRK98_00855 PF01061 ABC-2 type transporter NRK98_00860 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NRK98_00865 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRK98_00885 PF02569 Pantoate-beta-alanine ligase NRK98_00890 PF02548 Ketopantoate hydroxymethyltransferase NRK98_00895 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRK98_00900 PF01743 Poly A polymerase head domain NRK98_00900 PF12627 Probable RNA and SrmB- binding site of polymerase A NRK98_00900 PF12626 Polymerase A arginine-rich C-terminus NRK98_00905 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRK98_00910 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRK98_00915 PF17746 SfsA N-terminal OB domain NRK98_00915 PF03749 Sugar fermentation stimulation protein RE domain NRK98_00925 PF08482 ATP-dependent helicase C-terminal NRK98_00925 PF00271 Helicase conserved C-terminal domain NRK98_00925 PF04408 Helicase associated domain (HA2) NRK98_00925 PF00270 DEAD/DEAH box helicase NRK98_00930 PF00905 Penicillin binding protein transpeptidase domain NRK98_00930 PF14814 Bifunctional transglycosylase second domain NRK98_00930 PF00912 Transglycosylase NRK98_00935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK98_00940 PF00893 Small Multidrug Resistance protein NRK98_00945 PF00893 Small Multidrug Resistance protein NRK98_00955 PF11849 Domain of unknown function (DUF3369) NRK98_00965 PF01569 PAP2 superfamily NRK98_00985 PF00202 Aminotransferase class-III NRK98_00990 PF00654 Voltage gated chloride channel NRK98_01000 PF01521 Iron-sulphur cluster biosynthesis NRK98_01030 PF02954 Bacterial regulatory protein, Fis family NRK98_01035 PF01207 Dihydrouridine synthase (Dus) NRK98_01040 PF02321 Outer membrane efflux protein NRK98_01045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_01075 PF00072 Response regulator receiver domain NRK98_01080 PF00854 POT family NRK98_01085 PF00483 Nucleotidyl transferase NRK98_01095 PF00459 Inositol monophosphatase family NRK98_01100 PF03795 YCII-related domain NRK98_01105 PF04279 Intracellular septation protein A NRK98_01110 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRK98_01115 PF03006 Haemolysin-III related NRK98_01120 PF06826 Predicted Permease Membrane Region NRK98_01120 PF02080 TrkA-C domain NRK98_01130 PF01584 CheW-like domain NRK98_01130 PF00072 Response regulator receiver domain NRK98_01135 PF13472 GDSL-like Lipase/Acylhydrolase family NRK98_01140 PF00005 ABC transporter NRK98_01150 PF01370 NAD dependent epimerase/dehydratase family NRK98_01150 PF08338 Domain of unknown function (DUF1731) NRK98_01155 PF00563 EAL domain NRK98_01155 PF12792 CSS motif domain associated with EAL NRK98_01160 PF00155 Aminotransferase class I and II NRK98_01165 PF01483 Proprotein convertase P-domain NRK98_01165 PF04389 Peptidase family M28 NRK98_01170 PF02390 Putative methyltransferase NRK98_01175 PF04320 Protein with unknown function (DUF469) NRK98_01180 PF04960 Glutaminase NRK98_01185 PF00581 Rhodanese-like domain NRK98_01190 PF05922 Peptidase inhibitor I9 NRK98_01190 PF00082 Subtilase family NRK98_01195 PF06004 Bacterial protein of unknown function (DUF903) NRK98_01200 PF00664 ABC transporter transmembrane region NRK98_01200 PF00005 ABC transporter NRK98_01205 PF00561 alpha/beta hydrolase fold NRK98_01220 PF05547 Immune inhibitor A peptidase M6 NRK98_01220 PF00801 PKD domain NRK98_01225 PF06877 Regulator of ribonuclease activity B NRK98_01230 PF00563 EAL domain NRK98_01230 PF00990 Diguanylate cyclase, GGDEF domain NRK98_01230 PF03707 Bacterial signalling protein N terminal repeat NRK98_01250 PF09905 DNA-binding protein VF530 NRK98_01255 PF02666 Phosphatidylserine decarboxylase NRK98_01260 PF03193 RsgA GTPase NRK98_01265 PF00929 Exonuclease NRK98_01295 PF00313 'Cold-shock' DNA-binding domain NRK98_01305 PF00672 HAMP domain NRK98_01305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_01310 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRK98_01345 PF06483 Chitinase C NRK98_01345 PF00704 Glycosyl hydrolases family 18 NRK98_01360 PF02472 Biopolymer transport protein ExbD/TolR NRK98_01365 PF01618 MotA/TolQ/ExbB proton channel family NRK98_01370 PF01618 MotA/TolQ/ExbB proton channel family NRK98_01380 PF07715 TonB-dependent Receptor Plug Domain NRK98_01380 PF00593 TonB dependent receptor NRK98_01385 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_01390 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_01390 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK98_01400 PF00005 ABC transporter NRK98_01400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK98_01405 PF00005 ABC transporter NRK98_01405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK98_01410 PF07687 Peptidase dimerisation domain NRK98_01410 PF01546 Peptidase family M20/M25/M40 NRK98_01415 PF00156 Phosphoribosyl transferase domain NRK98_01420 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NRK98_01425 PF07417 Sigma factor-binding transcriptional regulator Crl NRK98_01430 PF01472 PUA domain NRK98_01430 PF00696 Amino acid kinase family NRK98_01445 PF00582 Universal stress protein family NRK98_01460 PF00294 pfkB family carbohydrate kinase NRK98_01465 PF04227 Indigoidine synthase A like protein NRK98_01470 PF00194 Eukaryotic-type carbonic anhydrase NRK98_01475 PF03150 Di-haem cytochrome c peroxidase NRK98_01475 PF00034 Cytochrome c NRK98_01510 PF00550 Phosphopantetheine attachment site NRK98_01515 PF00550 Phosphopantetheine attachment site NRK98_01525 PF13193 AMP-binding enzyme C-terminal domain NRK98_01525 PF00501 AMP-binding enzyme NRK98_01530 PF07977 FabA-like domain NRK98_01540 PF00221 Aromatic amino acid lyase NRK98_01565 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK98_01565 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK98_01580 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK98_01580 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK98_01590 PF00994 Probable molybdopterin binding domain NRK98_01600 PF06738 Putative threonine/serine exporter NRK98_01605 PF12821 Threonine/Serine exporter, ThrE NRK98_01610 PF00186 Dihydrofolate reductase NRK98_01615 PF00571 CBS domain NRK98_01615 PF00005 ABC transporter NRK98_01620 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_01625 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRK98_01630 PF01507 Phosphoadenosine phosphosulfate reductase family NRK98_01635 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRK98_01635 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRK98_01640 PF00175 Oxidoreductase NAD-binding domain NRK98_01640 PF00258 Flavodoxin NRK98_01640 PF00667 FAD binding domain NRK98_01645 PF02567 Phenazine biosynthesis-like protein NRK98_01650 PF00152 tRNA synthetases class II (D, K and N) NRK98_01650 PF01336 OB-fold nucleic acid binding domain NRK98_01660 PF02743 Cache domain NRK98_01660 PF00672 HAMP domain NRK98_01660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_01665 PF03616 Sodium/glutamate symporter NRK98_01670 PF17763 Glutaminase/Asparaginase C-terminal domain NRK98_01670 PF00710 Asparaginase, N-terminal NRK98_01675 PF07023 Protein of unknown function (DUF1315) NRK98_01680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRK98_01680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRK98_01695 PF01343 Peptidase family S49 NRK98_01700 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRK98_01700 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_01705 PF00881 Nitroreductase family NRK98_01710 PF14602 Hexapeptide repeat of succinyl-transferase NRK98_01710 PF12464 Maltose acetyltransferase NRK98_01715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK98_01715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK98_01715 PF01842 ACT domain NRK98_01725 PF08240 Alcohol dehydrogenase GroES-like domain NRK98_01725 PF00107 Zinc-binding dehydrogenase NRK98_01730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_01730 PF03466 LysR substrate binding domain NRK98_01735 PF02378 Phosphotransferase system, EIIC NRK98_01735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRK98_01735 PF00367 phosphotransferase system, EIIB NRK98_01740 PF00474 Sodium:solute symporter family NRK98_01745 PF06196 Protein of unknown function (DUF997) NRK98_01750 PF02785 Biotin carboxylase C-terminal domain NRK98_01750 PF00289 Biotin carboxylase, N-terminal domain NRK98_01750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRK98_01755 PF00364 Biotin-requiring enzyme NRK98_01760 PF01220 Dehydroquinase class II NRK98_01765 PF16177 Acetyl-coenzyme A synthetase N-terminus NRK98_01765 PF00501 AMP-binding enzyme NRK98_01765 PF13193 AMP-binding enzyme C-terminal domain NRK98_01775 PF03707 Bacterial signalling protein N terminal repeat NRK98_01775 PF00563 EAL domain NRK98_01775 PF13188 PAS domain NRK98_01775 PF00990 Diguanylate cyclase, GGDEF domain NRK98_01795 PF02613 Nitrate reductase delta subunit NRK98_01800 PF00384 Molybdopterin oxidoreductase NRK98_01800 PF18364 Molybdopterin oxidoreductase N-terminal domain NRK98_01800 PF01568 Molydopterin dinucleotide binding domain NRK98_01805 PF03264 NapC/NirT cytochrome c family, N-terminal region NRK98_01810 PF00072 Response regulator receiver domain NRK98_01810 PF00486 Transcriptional regulatory protein, C terminal NRK98_01820 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK98_01825 PF01627 Hpt domain NRK98_01825 PF00512 His Kinase A (phospho-acceptor) domain NRK98_01825 PF00072 Response regulator receiver domain NRK98_01825 PF00672 HAMP domain NRK98_01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_01835 PF00464 Serine hydroxymethyltransferase NRK98_01850 PF03477 ATP cone domain NRK98_01855 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRK98_01855 PF01872 RibD C-terminal domain NRK98_01860 PF00677 Lumazine binding domain NRK98_01865 PF00925 GTP cyclohydrolase II NRK98_01865 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRK98_01870 PF00885 6,7-dimethyl-8-ribityllumazine synthase NRK98_01875 PF01029 NusB family NRK98_01880 PF00586 AIR synthase related protein, N-terminal domain NRK98_01880 PF02769 AIR synthase related protein, C-terminal domain NRK98_01885 PF04608 Phosphatidylglycerophosphatase A NRK98_01890 PF00005 ABC transporter NRK98_01890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK98_01895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_01900 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_01905 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_01905 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK98_01910 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NRK98_01910 PF02780 Transketolase, C-terminal domain NRK98_01910 PF02779 Transketolase, pyrimidine binding domain NRK98_01915 PF00348 Polyprenyl synthetase NRK98_01920 PF02609 Exonuclease VII small subunit NRK98_01925 PF01618 MotA/TolQ/ExbB proton channel family NRK98_01930 PF00691 OmpA family NRK98_01930 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRK98_01935 PF01272 Transcription elongation factor, GreA/GreB, C-term NRK98_01935 PF03449 Transcription elongation factor, N-terminal NRK98_01945 PF01985 CRS1 / YhbY (CRM) domain NRK98_01950 PF01728 FtsJ-like methyltransferase NRK98_01955 PF06480 FtsH Extracellular NRK98_01955 PF01434 Peptidase family M41 NRK98_01955 PF17862 AAA+ lid domain NRK98_01955 PF00004 ATPase family associated with various cellular activities (AAA) NRK98_01960 PF00809 Pterin binding enzyme NRK98_01965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRK98_01965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRK98_01965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRK98_01965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRK98_01970 PF00121 Triosephosphate isomerase NRK98_01975 PF03840 Preprotein translocase SecG subunit NRK98_01990 PF17384 RimP C-terminal SH3 domain NRK98_01990 PF02576 RimP N-terminal domain NRK98_01995 PF08529 NusA N-terminal domain NRK98_01995 PF00575 S1 RNA binding domain NRK98_01995 PF13184 NusA-like KH domain NRK98_02000 PF00009 Elongation factor Tu GTP binding domain NRK98_02000 PF11987 Translation-initiation factor 2 NRK98_02000 PF08364 Bacterial translation initiation factor IF-2 associated region NRK98_02000 PF04760 Translation initiation factor IF-2, N-terminal region NRK98_02005 PF02033 Ribosome-binding factor A NRK98_02010 PF09157 Pseudouridine synthase II TruB, C-terminal NRK98_02010 PF16198 tRNA pseudouridylate synthase B C-terminal domain NRK98_02010 PF01509 TruB family pseudouridylate synthase (N terminal domain) NRK98_02015 PF00312 Ribosomal protein S15 NRK98_02020 PF00575 S1 RNA binding domain NRK98_02020 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NRK98_02020 PF01138 3' exoribonuclease family, domain 1 NRK98_02020 PF03725 3' exoribonuclease family, domain 2 NRK98_02020 PF00013 KH domain NRK98_02025 PF07690 Major Facilitator Superfamily NRK98_02030 PF00990 Diguanylate cyclase, GGDEF domain NRK98_02035 PF02635 DsrE/DsrF-like family NRK98_02045 PF10415 Fumarase C C-terminus NRK98_02045 PF00206 Lyase NRK98_02050 PF03575 Peptidase family S51 NRK98_02055 PF00072 Response regulator receiver domain NRK98_02055 PF00196 Bacterial regulatory proteins, luxR family NRK98_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_02060 PF00512 His Kinase A (phospho-acceptor) domain NRK98_02060 PF00989 PAS fold NRK98_02065 PF13247 4Fe-4S dicluster domain NRK98_02070 PF03916 Polysulphide reductase, NrfD NRK98_02075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK98_02075 PF01568 Molydopterin dinucleotide binding domain NRK98_02075 PF00384 Molybdopterin oxidoreductase NRK98_02095 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRK98_02100 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NRK98_02105 PF03734 L,D-transpeptidase catalytic domain NRK98_02105 PF17969 L,D-transpeptidase C-terminal domain NRK98_02115 PF01523 Putative modulator of DNA gyrase NRK98_02120 PF01523 Putative modulator of DNA gyrase NRK98_02125 PF00258 Flavodoxin NRK98_02130 PF02899 Phage integrase, N-terminal SAM-like domain NRK98_02130 PF00589 Phage integrase family NRK98_02135 PF00990 Diguanylate cyclase, GGDEF domain NRK98_02140 PF01741 Large-conductance mechanosensitive channel, MscL NRK98_02150 PF17768 RecJ OB domain NRK98_02150 PF02272 DHHA1 domain NRK98_02150 PF01368 DHH family NRK98_02155 PF13411 MerR HTH family regulatory protein NRK98_02170 PF02508 Rnf-Nqr subunit, membrane protein NRK98_02175 PF06821 Serine hydrolase NRK98_02180 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NRK98_02180 PF04055 Radical SAM superfamily NRK98_02185 PF03099 Biotin/lipoate A/B protein ligase family NRK98_02190 PF04359 Protein of unknown function (DUF493) NRK98_02195 PF07943 Penicillin-binding protein 5, C-terminal domain NRK98_02195 PF00768 D-alanyl-D-alanine carboxypeptidase NRK98_02200 PF03330 Lytic transglycolase NRK98_02200 PF05036 Sporulation related domain NRK98_02205 PF13406 Transglycosylase SLT domain NRK98_02210 PF01098 Cell cycle protein NRK98_02215 PF03717 Penicillin-binding Protein dimerisation domain NRK98_02215 PF00905 Penicillin binding protein transpeptidase domain NRK98_02220 PF02590 Predicted SPOUT methyltransferase NRK98_02230 PF01467 Cytidylyltransferase-like NRK98_02245 PF13603 Leucyl-tRNA synthetase, Domain 2 NRK98_02245 PF00133 tRNA synthetases class I (I, L, M and V) NRK98_02245 PF08264 Anticodon-binding domain of tRNA NRK98_02250 PF07295 Zinc-ribbon containing domain NRK98_02255 PF00795 Carbon-nitrogen hydrolase NRK98_02260 PF00571 CBS domain NRK98_02260 PF03471 Transporter associated domain NRK98_02265 PF02130 Uncharacterized protein family UPF0054 NRK98_02270 PF02562 PhoH-like protein NRK98_02275 PF04055 Radical SAM superfamily NRK98_02275 PF01938 TRAM domain NRK98_02275 PF00919 Uncharacterized protein family UPF0004 NRK98_02280 PF01494 FAD binding domain NRK98_02285 PF00857 Isochorismatase family NRK98_02295 PF00990 Diguanylate cyclase, GGDEF domain NRK98_02295 PF05230 MASE2 domain NRK98_02300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_02300 PF03466 LysR substrate binding domain NRK98_02310 PF13419 Haloacid dehalogenase-like hydrolase NRK98_02320 PF00990 Diguanylate cyclase, GGDEF domain NRK98_02330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK98_02330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK98_02340 PF09997 Predicted membrane protein (DUF2238) NRK98_02345 PF01132 Elongation factor P (EF-P) OB domain NRK98_02345 PF08207 Elongation factor P (EF-P) KOW-like domain NRK98_02345 PF09285 Elongation factor P, C-terminal NRK98_02355 PF00478 IMP dehydrogenase / GMP reductase domain NRK98_02365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_02365 PF08521 Two-component sensor kinase N-terminal NRK98_02365 PF00512 His Kinase A (phospho-acceptor) domain NRK98_02370 PF00072 Response regulator receiver domain NRK98_02370 PF00486 Transcriptional regulatory protein, C terminal NRK98_02390 PF00501 AMP-binding enzyme NRK98_02400 PF13847 Methyltransferase domain NRK98_02405 PF06224 Winged helix DNA-binding domain NRK98_02425 PF02313 Fumarate reductase subunit D NRK98_02430 PF02300 Fumarate reductase subunit C NRK98_02435 PF13085 2Fe-2S iron-sulfur cluster binding domain NRK98_02435 PF13183 4Fe-4S dicluster domain NRK98_02440 PF00890 FAD binding domain NRK98_02440 PF02910 Fumarate reductase flavoprotein C-term NRK98_02445 PF02743 Cache domain NRK98_02445 PF00672 HAMP domain NRK98_02445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_02450 PF03009 Glycerophosphoryl diester phosphodiesterase family NRK98_02455 PF00924 Mechanosensitive ion channel NRK98_02455 PF12795 Mechanosensitive ion channel porin domain NRK98_02455 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRK98_02465 PF01476 LysM domain NRK98_02465 PF08525 Opacity-associated protein A N-terminal motif NRK98_02465 PF01551 Peptidase family M23 NRK98_02480 PF03466 LysR substrate binding domain NRK98_02480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_02495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_02495 PF00672 HAMP domain NRK98_02500 PF03466 LysR substrate binding domain NRK98_02500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_02505 PF17092 Penicillin-binding protein OB-like domain NRK98_02505 PF00912 Transglycosylase NRK98_02505 PF00905 Penicillin binding protein transpeptidase domain NRK98_02510 PF11104 Type IV pilus assembly protein PilM; NRK98_02520 PF04350 Pilus assembly protein, PilO NRK98_02530 PF11741 AMIN domain NRK98_02530 PF00263 Bacterial type II and III secretion system protein NRK98_02530 PF03958 Bacterial type II/III secretion system short domain NRK98_02530 PF07660 Secretin and TonB N terminus short domain NRK98_02535 PF01202 Shikimate kinase NRK98_02540 PF01761 3-dehydroquinate synthase NRK98_02550 PF02086 D12 class N6 adenine-specific DNA methyltransferase NRK98_02555 PF00834 Ribulose-phosphate 3 epimerase family NRK98_02560 PF13419 Haloacid dehalogenase-like hydrolase NRK98_02565 PF00579 tRNA synthetases class I (W and Y) NRK98_02575 PF00117 Glutamine amidotransferase class-I NRK98_02580 PF00202 Aminotransferase class-III NRK98_02585 PF04958 Arginine N-succinyltransferase beta subunit NRK98_02590 PF00171 Aldehyde dehydrogenase family NRK98_02625 PF13419 Haloacid dehalogenase-like hydrolase NRK98_02630 PF07690 Major Facilitator Superfamily NRK98_02635 PF12848 ABC transporter NRK98_02635 PF00005 ABC transporter NRK98_02645 PF16657 Maltogenic Amylase, C-terminal domain NRK98_02645 PF00128 Alpha amylase, catalytic domain NRK98_02655 PF04266 ASCH domain NRK98_02665 PF01048 Phosphorylase superfamily NRK98_02670 PF04973 Nicotinamide mononucleotide transporter NRK98_02675 PF03600 Citrate transporter NRK98_02675 PF02080 TrkA-C domain NRK98_02715 PF01926 50S ribosome-binding GTPase NRK98_02715 PF06071 Protein of unknown function (DUF933) NRK98_02720 PF01195 Peptidyl-tRNA hydrolase NRK98_02725 PF02872 5'-nucleotidase, C-terminal domain NRK98_02725 PF00149 Calcineurin-like phosphoesterase NRK98_02730 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NRK98_02730 PF14572 Phosphoribosyl synthetase-associated domain NRK98_02740 PF08544 GHMP kinases C terminal NRK98_02740 PF00288 GHMP kinases N terminal domain NRK98_02745 PF03550 Outer membrane lipoprotein LolB NRK98_02750 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NRK98_02750 PF01488 Shikimate / quinate 5-dehydrogenase NRK98_02750 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NRK98_02755 PF03462 PCRF domain NRK98_02755 PF00472 RF-1 domain NRK98_02760 PF13847 Methyltransferase domain NRK98_02760 PF17827 PrmC N-terminal domain NRK98_02770 PF13369 Transglutaminase-like superfamily NRK98_02775 PF00793 DAHP synthetase I family NRK98_02780 PF00375 Sodium:dicarboxylate symporter family NRK98_02785 PF01228 Glycine radical NRK98_02790 PF03167 Uracil DNA glycosylase superfamily NRK98_02805 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRK98_02810 PF01235 Sodium:alanine symporter family NRK98_02815 PF13559 Domain of unknown function (DUF4129) NRK98_02815 PF11992 Domain of unknown function (DUF3488) NRK98_02815 PF01841 Transglutaminase-like superfamily NRK98_02825 PF07726 ATPase family associated with various cellular activities (AAA) NRK98_02825 PF17863 AAA lid domain NRK98_02830 PF00144 Beta-lactamase NRK98_02835 PF00854 POT family NRK98_02840 PF03652 Holliday junction resolvase NRK98_02845 PF02622 Uncharacterized ACR, COG1678 NRK98_02850 PF12729 Four helix bundle sensory module for signal transduction NRK98_02850 PF00672 HAMP domain NRK98_02850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_02855 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NRK98_02855 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NRK98_02860 PF04452 RNA methyltransferase NRK98_02865 PF04231 Endonuclease I NRK98_02870 PF10263 SprT-like family NRK98_02875 PF02772 S-adenosylmethionine synthetase, central domain NRK98_02875 PF00438 S-adenosylmethionine synthetase, N-terminal domain NRK98_02875 PF02773 S-adenosylmethionine synthetase, C-terminal domain NRK98_02880 PF02779 Transketolase, pyrimidine binding domain NRK98_02880 PF02780 Transketolase, C-terminal domain NRK98_02880 PF00456 Transketolase, thiamine diphosphate binding domain NRK98_02890 PF01042 Endoribonuclease L-PSP NRK98_02895 PF03702 Anhydro-N-acetylmuramic acid kinase NRK98_02900 PF01476 LysM domain NRK98_02900 PF08525 Opacity-associated protein A N-terminal motif NRK98_02900 PF01551 Peptidase family M23 NRK98_02905 PF00579 tRNA synthetases class I (W and Y) NRK98_02910 PF01204 Trehalase NRK98_02920 PF01161 Phosphatidylethanolamine-binding protein NRK98_02925 PF00709 Adenylosuccinate synthetase NRK98_02930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_02930 PF03466 LysR substrate binding domain NRK98_02940 PF00155 Aminotransferase class I and II NRK98_02945 PF07690 Major Facilitator Superfamily NRK98_02950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_02950 PF03466 LysR substrate binding domain NRK98_02955 PF00106 short chain dehydrogenase NRK98_02960 PF08496 Peptidase family S49 N-terminal NRK98_02960 PF01343 Peptidase family S49 NRK98_02965 PF04996 Succinylarginine dihydrolase NRK98_02970 PF01396 Topoisomerase DNA binding C4 zinc finger NRK98_02970 PF01751 Toprim domain NRK98_02970 PF01131 DNA topoisomerase NRK98_02970 PF08272 Topoisomerase I zinc-ribbon-like NRK98_02985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_02985 PF08447 PAS fold NRK98_02990 PF02838 Glycosyl hydrolase family 20, domain 2 NRK98_02990 PF00728 Glycosyl hydrolase family 20, catalytic domain NRK98_02995 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRK98_03005 PF00005 ABC transporter NRK98_03005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK98_03010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK98_03010 PF00005 ABC transporter NRK98_03015 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK98_03015 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_03020 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_03025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_03030 PF00512 His Kinase A (phospho-acceptor) domain NRK98_03030 PF00072 Response regulator receiver domain NRK98_03030 PF09308 LuxQ, periplasmic NRK98_03050 PF10725 Protein of unknown function (DUF2517) NRK98_03070 PF05114 Protein of unknown function (DUF692) NRK98_03090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_03090 PF08447 PAS fold NRK98_03090 PF13426 PAS domain NRK98_03105 PF04632 Fusaric acid resistance protein family NRK98_03110 PF00994 Probable molybdopterin binding domain NRK98_03110 PF03453 MoeA N-terminal region (domain I and II) NRK98_03110 PF03454 MoeA C-terminal region (domain IV) NRK98_03115 PF12804 MobA-like NTP transferase domain NRK98_03120 PF00005 ABC transporter NRK98_03125 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_03130 PF12849 PBP superfamily domain NRK98_03135 PF02954 Bacterial regulatory protein, Fis family NRK98_03135 PF00072 Response regulator receiver domain NRK98_03135 PF00158 Sigma-54 interaction domain NRK98_03140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_03140 PF00512 His Kinase A (phospho-acceptor) domain NRK98_03140 PF00989 PAS fold NRK98_03145 PF12728 Helix-turn-helix domain NRK98_03145 PF12727 PBP superfamily domain NRK98_03150 PF02634 FdhD/NarQ family NRK98_03185 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK98_03185 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK98_03185 PF01568 Molydopterin dinucleotide binding domain NRK98_03185 PF12838 4Fe-4S dicluster domain NRK98_03185 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRK98_03185 PF00384 Molybdopterin oxidoreductase NRK98_03185 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRK98_03185 PF12838 4Fe-4S dicluster domain NRK98_03185 PF01568 Molydopterin dinucleotide binding domain NRK98_03185 PF00384 Molybdopterin oxidoreductase NRK98_03190 PF13247 4Fe-4S dicluster domain NRK98_03200 PF00390 Malic enzyme, N-terminal domain NRK98_03200 PF03949 Malic enzyme, NAD binding domain NRK98_03215 PF00860 Permease family NRK98_03220 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_03225 PF00672 HAMP domain NRK98_03225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_03235 PF10282 Lactonase, 7-bladed beta-propeller NRK98_03245 PF00924 Mechanosensitive ion channel NRK98_03245 PF12795 Mechanosensitive ion channel porin domain NRK98_03245 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRK98_03250 PF00224 Pyruvate kinase, barrel domain NRK98_03250 PF02887 Pyruvate kinase, alpha/beta domain NRK98_03260 PF04389 Peptidase family M28 NRK98_03260 PF04151 Bacterial pre-peptidase C-terminal domain NRK98_03265 PF00999 Sodium/hydrogen exchanger family NRK98_03265 PF02254 TrkA-N domain NRK98_03275 PF04381 Putative exonuclease, RdgC NRK98_03285 PF12320 Type 5 capsule protein repressor C-terminal domain NRK98_03285 PF00149 Calcineurin-like phosphoesterase NRK98_03295 PF01292 Prokaryotic cytochrome b561 NRK98_03300 PF00990 Diguanylate cyclase, GGDEF domain NRK98_03300 PF00072 Response regulator receiver domain NRK98_03305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRK98_03310 PF02896 PEP-utilising enzyme, TIM barrel domain NRK98_03310 PF05524 PEP-utilising enzyme, N-terminal NRK98_03310 PF00391 PEP-utilising enzyme, mobile domain NRK98_03315 PF00381 PTS HPr component phosphorylation site NRK98_03320 PF00291 Pyridoxal-phosphate dependent enzyme NRK98_03325 PF02861 Clp amino terminal domain, pathogenicity island component NRK98_03325 PF17871 AAA lid domain NRK98_03325 PF10431 C-terminal, D2-small domain, of ClpB protein NRK98_03325 PF00004 ATPase family associated with various cellular activities (AAA) NRK98_03325 PF07724 AAA domain (Cdc48 subfamily) NRK98_03335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRK98_03335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRK98_03340 PF01966 HD domain NRK98_03340 PF00672 HAMP domain NRK98_03345 PF01980 tRNA-methyltransferase O NRK98_03345 PF18389 TrmO C-terminal domain NRK98_03365 PF00664 ABC transporter transmembrane region NRK98_03365 PF00005 ABC transporter NRK98_03370 PF00664 ABC transporter transmembrane region NRK98_03370 PF00005 ABC transporter NRK98_03385 PF00486 Transcriptional regulatory protein, C terminal NRK98_03385 PF00072 Response regulator receiver domain NRK98_03395 PF03737 Aldolase/RraA NRK98_03410 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NRK98_03415 PF00588 SpoU rRNA Methylase family NRK98_03420 PF01842 ACT domain NRK98_03420 PF13840 ACT domain NRK98_03420 PF00742 Homoserine dehydrogenase NRK98_03420 PF03447 Homoserine dehydrogenase, NAD binding domain NRK98_03420 PF00696 Amino acid kinase family NRK98_03425 PF08544 GHMP kinases C terminal NRK98_03425 PF00288 GHMP kinases N terminal domain NRK98_03430 PF00291 Pyridoxal-phosphate dependent enzyme NRK98_03430 PF14821 Threonine synthase N terminus NRK98_03435 PF13474 SnoaL-like domain NRK98_03450 PF12848 ABC transporter NRK98_03450 PF00005 ABC transporter NRK98_03465 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_03465 PF00072 Response regulator receiver domain NRK98_03465 PF00989 PAS fold NRK98_03465 PF01627 Hpt domain NRK98_03465 PF00512 His Kinase A (phospho-acceptor) domain NRK98_03465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_03470 PF00360 Phytochrome region NRK98_03470 PF01590 GAF domain NRK98_03470 PF00990 Diguanylate cyclase, GGDEF domain NRK98_03470 PF00563 EAL domain NRK98_03475 PF00672 HAMP domain NRK98_03475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_03475 PF00512 His Kinase A (phospho-acceptor) domain NRK98_03475 PF01627 Hpt domain NRK98_03475 PF00072 Response regulator receiver domain NRK98_03475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK98_03480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NRK98_03485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK98_03485 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRK98_03490 PF02690 Na+/Pi-cotransporter NRK98_03500 PF13520 Amino acid permease NRK98_03510 PF00324 Amino acid permease NRK98_03520 PF00202 Aminotransferase class-III NRK98_03525 PF00171 Aldehyde dehydrogenase family NRK98_03530 PF07883 Cupin domain NRK98_03530 PF01381 Helix-turn-helix NRK98_03535 PF01266 FAD dependent oxidoreductase NRK98_03550 PF00816 H-NS histone family NRK98_03560 PF00793 DAHP synthetase I family NRK98_03565 PF04954 Siderophore-interacting protein NRK98_03565 PF08021 Siderophore-interacting FAD-binding domain NRK98_03570 PF02321 Outer membrane efflux protein NRK98_03575 PF12704 MacB-like periplasmic core domain NRK98_03575 PF02687 FtsX-like permease family NRK98_03575 PF00005 ABC transporter NRK98_03580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_03590 PF02833 DHHA2 domain NRK98_03590 PF01368 DHH family NRK98_03595 PF02463 RecF/RecN/SMC N terminal domain NRK98_03600 PF01513 ATP-NAD kinase NRK98_03605 PF01025 GrpE NRK98_03610 PF00012 Hsp70 protein NRK98_03615 PF00684 DnaJ central domain NRK98_03615 PF00226 DnaJ domain NRK98_03615 PF01556 DnaJ C terminal domain NRK98_03620 PF11471 Maltoporin periplasmic N-terminal extension NRK98_03620 PF02264 LamB porin NRK98_03625 PF00294 pfkB family carbohydrate kinase NRK98_03630 PF02378 Phosphotransferase system, EIIC NRK98_03630 PF00367 phosphotransferase system, EIIB NRK98_03635 PF00251 Glycosyl hydrolases family 32 N-terminal domain NRK98_03635 PF08244 Glycosyl hydrolases family 32 C terminal NRK98_03640 PF13407 Periplasmic binding protein domain NRK98_03640 PF00356 Bacterial regulatory proteins, lacI family NRK98_03645 PF02308 MgtC family NRK98_03660 PF01022 Bacterial regulatory protein, arsR family NRK98_03665 PF04143 Sulphur transport NRK98_03680 PF00873 AcrB/AcrD/AcrF family NRK98_03685 PF00990 Diguanylate cyclase, GGDEF domain NRK98_03685 PF03707 Bacterial signalling protein N terminal repeat NRK98_03685 PF00563 EAL domain NRK98_03690 PF03099 Biotin/lipoate A/B protein ligase family NRK98_03690 PF10437 Bacterial lipoate protein ligase C-terminus NRK98_03705 PF00873 AcrB/AcrD/AcrF family NRK98_03710 PF00529 HlyD membrane-fusion protein of T1SS NRK98_03710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_03725 PF00873 AcrB/AcrD/AcrF family NRK98_03730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_03735 PF03372 Endonuclease/Exonuclease/phosphatase family NRK98_03750 PF00011 Hsp20/alpha crystallin family NRK98_03755 PF07690 Major Facilitator Superfamily NRK98_03760 PF02424 ApbE family NRK98_03765 PF00127 Copper binding proteins, plastocyanin/azurin family NRK98_03780 PF01156 Inosine-uridine preferring nucleoside hydrolase NRK98_03790 PF00034 Cytochrome c NRK98_03790 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRK98_03800 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRK98_03800 PF06481 COX Aromatic Rich Motif NRK98_03805 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRK98_03810 PF00510 Cytochrome c oxidase subunit III NRK98_03815 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NRK98_03820 PF01040 UbiA prenyltransferase family NRK98_03825 PF07690 Major Facilitator Superfamily NRK98_03835 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRK98_03840 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_03845 PF00005 ABC transporter NRK98_03850 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRK98_03860 PF07670 Nucleoside recognition NRK98_03860 PF07662 Na+ dependent nucleoside transporter C-terminus NRK98_03860 PF01773 Na+ dependent nucleoside transporter N-terminus NRK98_03880 PF13657 HipA N-terminal domain NRK98_03880 PF07804 HipA-like C-terminal domain NRK98_03885 PF01381 Helix-turn-helix NRK98_03890 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRK98_03905 PF00290 Tryptophan synthase alpha chain NRK98_03910 PF00291 Pyridoxal-phosphate dependent enzyme NRK98_03915 PF00218 Indole-3-glycerol phosphate synthase NRK98_03915 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NRK98_03920 PF02885 Glycosyl transferase family, helical bundle domain NRK98_03920 PF00591 Glycosyl transferase family, a/b domain NRK98_03925 PF00591 Glycosyl transferase family, a/b domain NRK98_03925 PF02885 Glycosyl transferase family, helical bundle domain NRK98_03925 PF00117 Glutamine amidotransferase class-I NRK98_03930 PF00425 chorismate binding enzyme NRK98_03930 PF04715 Anthranilate synthase component I, N terminal region NRK98_03935 PF02811 PHP domain NRK98_03940 PF01300 Telomere recombination NRK98_03945 PF02616 Segregation and condensation protein ScpA NRK98_03950 PF04079 Segregation and condensation complex subunit ScpB NRK98_03955 PF00849 RNA pseudouridylate synthase NRK98_03955 PF01479 S4 domain NRK98_03980 PF00440 Bacterial regulatory proteins, tetR family NRK98_03980 PF08361 MAATS-type transcriptional repressor, C-terminal region NRK98_03985 PF00529 HlyD membrane-fusion protein of T1SS NRK98_03985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_03990 PF00873 AcrB/AcrD/AcrF family NRK98_03995 PF02321 Outer membrane efflux protein NRK98_04000 PF16363 GDP-mannose 4,6 dehydratase NRK98_04005 PF04321 RmlD substrate binding domain NRK98_04010 PF00483 Nucleotidyl transferase NRK98_04015 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NRK98_04020 PF05523 WxcM-like, C-terminal NRK98_04030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRK98_04060 PF13439 Glycosyltransferase Family 4 NRK98_04060 PF00534 Glycosyl transferases group 1 NRK98_04065 PF00953 Glycosyl transferase family 4 NRK98_04080 PF04337 Protein of unknown function, DUF480 NRK98_04085 PF00271 Helicase conserved C-terminal domain NRK98_04085 PF00176 SNF2 family N-terminal domain NRK98_04085 PF04434 SWIM zinc finger NRK98_04090 PF05472 DNA replication terminus site-binding protein (Ter protein) NRK98_04100 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NRK98_04105 PF00676 Dehydrogenase E1 component NRK98_04110 PF02779 Transketolase, pyrimidine binding domain NRK98_04110 PF02780 Transketolase, C-terminal domain NRK98_04115 PF00364 Biotin-requiring enzyme NRK98_04115 PF02817 e3 binding domain NRK98_04115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRK98_04120 PF00313 'Cold-shock' DNA-binding domain NRK98_04145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_04150 PF00892 EamA-like transporter family NRK98_04155 PF00455 DeoR C terminal sensor domain NRK98_04155 PF08220 DeoR-like helix-turn-helix domain NRK98_04160 PF02901 Pyruvate formate lyase-like NRK98_04160 PF01228 Glycine radical NRK98_04165 PF04055 Radical SAM superfamily NRK98_04170 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRK98_04180 PF01966 HD domain NRK98_04180 PF11871 Domain of unknown function (DUF3391) NRK98_04185 PF00849 RNA pseudouridylate synthase NRK98_04185 PF01479 S4 domain NRK98_04195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_04200 PF12850 Calcineurin-like phosphoesterase superfamily domain NRK98_04215 PF13144 Chaperone for flagella basal body P-ring formation NRK98_04220 PF01584 CheW-like domain NRK98_04220 PF00072 Response regulator receiver domain NRK98_04225 PF03705 CheR methyltransferase, all-alpha domain NRK98_04225 PF01739 CheR methyltransferase, SAM binding domain NRK98_04230 PF00460 Flagella basal body rod protein NRK98_04235 PF00460 Flagella basal body rod protein NRK98_04235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK98_04245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK98_04245 PF07559 Flagellar basal body protein FlaE NRK98_04245 PF00460 Flagella basal body rod protein NRK98_04250 PF00460 Flagella basal body rod protein NRK98_04250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK98_04255 PF00460 Flagella basal body rod protein NRK98_04255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK98_04260 PF02107 Flagellar L-ring protein NRK98_04265 PF02119 Flagellar P-ring protein NRK98_04270 PF10135 Rod binding protein NRK98_04270 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NRK98_04275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK98_04275 PF00460 Flagella basal body rod protein NRK98_04280 PF00669 Bacterial flagellin N-terminal helical region NRK98_04285 PF00571 CBS domain NRK98_04285 PF01769 Divalent cation transporter NRK98_04285 PF03448 MgtE intracellular N domain NRK98_04290 PF02541 Ppx/GppA phosphatase family NRK98_04295 PF02503 Polyphosphate kinase middle domain NRK98_04295 PF13090 Polyphosphate kinase C-terminal domain 2 NRK98_04295 PF17941 Polyphosphate kinase C-terminal domain 1 NRK98_04295 PF13089 Polyphosphate kinase N-terminal domain NRK98_04300 PF01842 ACT domain NRK98_04310 PF06490 Flagellar regulatory protein FleQ NRK98_04310 PF02954 Bacterial regulatory protein, Fis family NRK98_04310 PF00158 Sigma-54 interaction domain NRK98_04315 PF13188 PAS domain NRK98_04315 PF00512 His Kinase A (phospho-acceptor) domain NRK98_04315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_04320 PF02954 Bacterial regulatory protein, Fis family NRK98_04320 PF00072 Response regulator receiver domain NRK98_04320 PF00158 Sigma-54 interaction domain NRK98_04325 PF01784 NIF3 (NGG1p interacting factor 3) NRK98_04330 PF00551 Formyl transferase NRK98_04335 PF00586 AIR synthase related protein, N-terminal domain NRK98_04335 PF02769 AIR synthase related protein, C-terminal domain NRK98_04350 PF00308 Bacterial dnaA protein NRK98_04355 PF00463 Isocitrate lyase family NRK98_04360 PF01274 Malate synthase NRK98_04375 PF14437 MafB19-like deaminase NRK98_04380 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_04385 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_04390 PF00005 ABC transporter NRK98_04395 PF01895 PhoU domain NRK98_04410 PF00571 CBS domain NRK98_04410 PF03471 Transporter associated domain NRK98_04410 PF01595 Cyclin M transmembrane N-terminal domain NRK98_04425 PF13520 Amino acid permease NRK98_04430 PF04116 Fatty acid hydroxylase superfamily NRK98_04445 PF00005 ABC transporter NRK98_04450 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_04455 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_04460 PF07690 Major Facilitator Superfamily NRK98_04465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_04465 PF07730 Histidine kinase NRK98_04465 PF05231 MASE1 NRK98_04470 PF00196 Bacterial regulatory proteins, luxR family NRK98_04470 PF00072 Response regulator receiver domain NRK98_04475 PF01272 Transcription elongation factor, GreA/GreB, C-term NRK98_04475 PF14760 Rnk N-terminus NRK98_04490 PF00245 Alkaline phosphatase NRK98_04495 PF00245 Alkaline phosphatase NRK98_04500 PF01926 50S ribosome-binding GTPase NRK98_04505 PF07690 Major Facilitator Superfamily NRK98_04510 PF00850 Histone deacetylase domain NRK98_04520 PF06733 DEAD_2 NRK98_04520 PF13307 Helicase C-terminal domain NRK98_04525 PF13609 Gram-negative porin NRK98_04535 PF00155 Aminotransferase class I and II NRK98_04540 PF05872 Bacterial protein of unknown function (DUF853) NRK98_04555 PF03772 Competence protein NRK98_04555 PF00753 Metallo-beta-lactamase superfamily NRK98_04560 PF00005 ABC transporter NRK98_04560 PF00664 ABC transporter transmembrane region NRK98_04565 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NRK98_04570 PF03966 Trm112p-like protein NRK98_04575 PF02348 Cytidylyltransferase NRK98_04580 PF00196 Bacterial regulatory proteins, luxR family NRK98_04580 PF00072 Response regulator receiver domain NRK98_04585 PF01541 GIY-YIG catalytic domain NRK98_04585 PF08459 UvrC Helix-hairpin-helix N-terminal NRK98_04585 PF02151 UvrB/uvrC motif NRK98_04590 PF01066 CDP-alcohol phosphatidyltransferase NRK98_04860 PF02899 Phage integrase, N-terminal SAM-like domain NRK98_04860 PF00589 Phage integrase family NRK98_04885 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB NRK98_04890 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRK98_04910 PF00037 4Fe-4S binding domain NRK98_04910 PF13247 4Fe-4S dicluster domain NRK98_04915 PF03916 Polysulphide reductase, NrfD NRK98_04920 PF00149 Calcineurin-like phosphoesterase NRK98_04930 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRK98_04935 PF09190 DALR domain NRK98_04935 PF01406 tRNA synthetases class I (C) catalytic domain NRK98_04950 PF13185 GAF domain NRK98_04950 PF00990 Diguanylate cyclase, GGDEF domain NRK98_04980 PF01169 Uncharacterized protein family UPF0016 NRK98_04985 PF01253 Translation initiation factor SUI1 NRK98_04995 PF07664 Ferrous iron transport protein B C terminus NRK98_04995 PF02421 Ferrous iron transport protein B NRK98_04995 PF07670 Nucleoside recognition NRK98_05010 PF00483 Nucleotidyl transferase NRK98_05015 PF00437 Type II/IV secretion system protein NRK98_05025 PF01627 Hpt domain NRK98_05025 PF00989 PAS fold NRK98_05025 PF00072 Response regulator receiver domain NRK98_05025 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_05025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_05025 PF00512 His Kinase A (phospho-acceptor) domain NRK98_05030 PF01032 FecCD transport family NRK98_05035 PF00005 ABC transporter NRK98_05040 PF00793 DAHP synthetase I family NRK98_05045 PF01219 Prokaryotic diacylglycerol kinase NRK98_05050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK98_05050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK98_05050 PF01842 ACT domain NRK98_05055 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NRK98_05060 PF01812 5-formyltetrahydrofolate cyclo-ligase family NRK98_05070 PF05173 Dihydrodipicolinate reductase, C-terminus NRK98_05070 PF01113 Dihydrodipicolinate reductase, N-terminus NRK98_05075 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NRK98_05075 PF00117 Glutamine amidotransferase class-I NRK98_05080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRK98_05080 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NRK98_05080 PF02142 MGS-like domain NRK98_05085 PF00682 HMGL-like NRK98_05085 PF08502 LeuA allosteric (dimerisation) domain NRK98_05095 PF07759 Protein of unknown function (DUF1615) NRK98_05125 PF13302 Acetyltransferase (GNAT) domain NRK98_05130 PF00271 Helicase conserved C-terminal domain NRK98_05130 PF00270 DEAD/DEAH box helicase NRK98_05140 PF14521 Lysine-specific metallo-endopeptidase NRK98_05155 PF00376 MerR family regulatory protein NRK98_05155 PF09278 MerR, DNA binding NRK98_05170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRK98_05170 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_05175 PF00310 Glutamine amidotransferases class-II NRK98_05175 PF04898 Glutamate synthase central domain NRK98_05175 PF01645 Conserved region in glutamate synthase NRK98_05175 PF01493 GXGXG motif NRK98_05180 PF16199 Radical_SAM C-terminal domain NRK98_05180 PF04055 Radical SAM superfamily NRK98_05185 PF00664 ABC transporter transmembrane region NRK98_05185 PF00005 ABC transporter NRK98_05185 PF03412 Peptidase C39 family NRK98_05240 PF00324 Amino acid permease NRK98_05250 PF03618 Kinase/pyrophosphorylase NRK98_05255 PF00391 PEP-utilising enzyme, mobile domain NRK98_05255 PF02896 PEP-utilising enzyme, TIM barrel domain NRK98_05255 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRK98_05265 PF14310 Fibronectin type III-like domain NRK98_05265 PF00933 Glycosyl hydrolase family 3 N terminal domain NRK98_05265 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRK98_05275 PF01483 Proprotein convertase P-domain NRK98_05275 PF00082 Subtilase family NRK98_05295 PF03180 NLPA lipoprotein NRK98_05300 PF01569 PAP2 superfamily NRK98_05305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK98_05305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK98_05305 PF11890 Domain of unknown function (DUF3410) NRK98_05310 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRK98_05310 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRK98_05320 PF01416 tRNA pseudouridine synthase NRK98_05325 PF17848 Acetyl-coA carboxylase zinc finger domain NRK98_05325 PF01039 Carboxyl transferase domain NRK98_05330 PF02875 Mur ligase family, glutamate ligase domain NRK98_05330 PF08245 Mur ligase middle domain NRK98_05335 PF05036 Sporulation related domain NRK98_05340 PF04358 DsrC like protein NRK98_05345 PF12805 FUSC-like inner membrane protein yccS NRK98_05350 PF01027 Inhibitor of apoptosis-promoting Bax1 NRK98_05370 PF08019 Phosphoethanolamine transferase EptA/EptB NRK98_05370 PF00884 Sulfatase NRK98_05375 PF09924 Uncharacterised conserved protein (DUF2156) NRK98_05375 PF03706 Lysylphosphatidylglycerol synthase TM region NRK98_05385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_05385 PF08447 PAS fold NRK98_05390 PF00990 Diguanylate cyclase, GGDEF domain NRK98_05390 PF00563 EAL domain NRK98_05390 PF13426 PAS domain NRK98_05395 PF00849 RNA pseudouridylate synthase NRK98_05405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK98_05410 PF04209 homogentisate 1,2-dioxygenase NRK98_05420 PF14497 Glutathione S-transferase, C-terminal domain NRK98_05420 PF02798 Glutathione S-transferase, N-terminal domain NRK98_05430 PF00733 Asparagine synthase NRK98_05430 PF13537 Glutamine amidotransferase domain NRK98_05440 PF00999 Sodium/hydrogen exchanger family NRK98_05440 PF02254 TrkA-N domain NRK98_05445 PF13344 Haloacid dehalogenase-like hydrolase NRK98_05450 PF00962 Adenosine/AMP deaminase NRK98_05455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRK98_05460 PF03471 Transporter associated domain NRK98_05460 PF03741 Integral membrane protein TerC family NRK98_05470 PF02913 FAD linked oxidases, C-terminal domain NRK98_05470 PF13183 4Fe-4S dicluster domain NRK98_05470 PF01565 FAD binding domain NRK98_05480 PF03061 Thioesterase superfamily NRK98_05485 PF03880 DbpA RNA binding domain NRK98_05485 PF00270 DEAD/DEAH box helicase NRK98_05485 PF00271 Helicase conserved C-terminal domain NRK98_05490 PF03553 Na+/H+ antiporter family NRK98_05490 PF13726 Na+-H+ antiporter family NRK98_05495 PF00929 Exonuclease NRK98_05500 PF12729 Four helix bundle sensory module for signal transduction NRK98_05500 PF00672 HAMP domain NRK98_05500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_05505 PF00691 OmpA family NRK98_05505 PF18393 MotY N-terminal domain NRK98_05510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK98_05515 PF00730 HhH-GPD superfamily base excision DNA repair protein NRK98_05515 PF00633 Helix-hairpin-helix motif NRK98_05515 PF10576 Iron-sulfur binding domain of endonuclease III NRK98_05520 PF02508 Rnf-Nqr subunit, membrane protein NRK98_05525 PF04205 FMN-binding domain NRK98_05530 PF03116 NQR2, RnfD, RnfE family NRK98_05535 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRK98_05535 PF10531 SLBB domain NRK98_05535 PF12838 4Fe-4S dicluster domain NRK98_05535 PF13375 RnfC Barrel sandwich hybrid domain NRK98_05540 PF04060 Putative Fe-S cluster NRK98_05545 PF02508 Rnf-Nqr subunit, membrane protein NRK98_05550 PF00892 EamA-like transporter family NRK98_05555 PF13426 PAS domain NRK98_05555 PF08447 PAS fold NRK98_05555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_05565 PF07055 Enoyl reductase FAD binding domain NRK98_05565 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRK98_05565 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRK98_05570 PF03606 C4-dicarboxylate anaerobic carrier NRK98_05575 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRK98_05575 PF12795 Mechanosensitive ion channel porin domain NRK98_05575 PF00924 Mechanosensitive ion channel NRK98_05580 PF00155 Aminotransferase class I and II NRK98_05590 PF00462 Glutaredoxin NRK98_05595 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NRK98_05600 PF00271 Helicase conserved C-terminal domain NRK98_05600 PF04851 Type III restriction enzyme, res subunit NRK98_05605 PF00529 HlyD membrane-fusion protein of T1SS NRK98_05605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_05610 PF11742 Protein of unknown function (DUF3302) NRK98_05615 PF02554 Carbon starvation protein CstA NRK98_05620 PF00072 Response regulator receiver domain NRK98_05620 PF04397 LytTr DNA-binding domain NRK98_05625 PF06580 Histidine kinase NRK98_05625 PF07694 5TMR of 5TMR-LYT NRK98_05630 PF01966 HD domain NRK98_05635 PF00465 Iron-containing alcohol dehydrogenase NRK98_05635 PF00171 Aldehyde dehydrogenase family NRK98_05645 PF01914 MarC family integral membrane protein NRK98_05650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_05655 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_05660 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK98_05660 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_05665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK98_05665 PF00005 ABC transporter NRK98_05670 PF00005 ABC transporter NRK98_05670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK98_05675 PF03741 Integral membrane protein TerC family NRK98_05680 PF01168 Alanine racemase, N-terminal domain NRK98_05680 PF00842 Alanine racemase, C-terminal domain NRK98_05690 PF00375 Sodium:dicarboxylate symporter family NRK98_05705 PF01979 Amidohydrolase family NRK98_05715 PF00672 HAMP domain NRK98_05715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_05720 PF01230 HIT domain NRK98_05755 PF13721 SecD export protein N-terminal TM region NRK98_05755 PF02355 Protein export membrane protein NRK98_05755 PF07549 SecD/SecF GG Motif NRK98_05760 PF02355 Protein export membrane protein NRK98_05760 PF07549 SecD/SecF GG Motif NRK98_05765 PF13426 PAS domain NRK98_05765 PF08447 PAS fold NRK98_05765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_05775 PF05661 Protein of unknown function (DUF808) NRK98_05780 PF01432 Peptidase family M3 NRK98_05780 PF08439 Oligopeptidase F NRK98_05785 PF08439 Oligopeptidase F NRK98_05785 PF01432 Peptidase family M3 NRK98_05790 PF00860 Permease family NRK98_05795 PF05728 Uncharacterised protein family (UPF0227) NRK98_05800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_05820 PF01906 Putative heavy-metal-binding NRK98_05830 PF02016 LD-carboxypeptidase N-terminal domain NRK98_05830 PF17676 LD-carboxypeptidase C-terminal domain NRK98_05835 PF00884 Sulfatase NRK98_05845 PF01842 ACT domain NRK98_05845 PF00696 Amino acid kinase family NRK98_05850 PF00583 Acetyltransferase (GNAT) family NRK98_05850 PF00696 Amino acid kinase family NRK98_05855 PF01625 Peptide methionine sulfoxide reductase NRK98_05875 PF00561 alpha/beta hydrolase fold NRK98_05880 PF03466 LysR substrate binding domain NRK98_05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_05885 PF02652 L-lactate permease NRK98_05890 PF02754 Cysteine-rich domain NRK98_05895 PF11870 Domain of unknown function (DUF3390) NRK98_05895 PF13183 4Fe-4S dicluster domain NRK98_05895 PF02589 LUD domain NRK98_05900 PF02589 LUD domain NRK98_05905 PF02913 FAD linked oxidases, C-terminal domain NRK98_05905 PF01565 FAD binding domain NRK98_05930 PF02687 FtsX-like permease family NRK98_05930 PF12704 MacB-like periplasmic core domain NRK98_05935 PF00005 ABC transporter NRK98_05945 PF03600 Citrate transporter NRK98_05955 PF07690 Major Facilitator Superfamily NRK98_05970 PF01593 Flavin containing amine oxidoreductase NRK98_05975 PF03239 Iron permease FTR1 family NRK98_06000 PF13533 Biotin-lipoyl like NRK98_06015 PF01740 STAS domain NRK98_06015 PF00916 Sulfate permease family NRK98_06025 PF00440 Bacterial regulatory proteins, tetR family NRK98_06035 PF00842 Alanine racemase, C-terminal domain NRK98_06035 PF01168 Alanine racemase, N-terminal domain NRK98_06040 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRK98_06040 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal NRK98_06045 PF13247 4Fe-4S dicluster domain NRK98_06050 PF03916 Polysulphide reductase, NrfD NRK98_06055 PF00374 Nickel-dependent hydrogenase NRK98_06060 PF01750 Hydrogenase maturation protease NRK98_06065 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE NRK98_06070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_06075 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_06080 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK98_06080 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_06085 PF00005 ABC transporter NRK98_06090 PF00005 ABC transporter NRK98_06095 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRK98_06105 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRK98_06110 PF00586 AIR synthase related protein, N-terminal domain NRK98_06110 PF02769 AIR synthase related protein, C-terminal domain NRK98_06115 PF01924 Hydrogenase formation hypA family NRK98_06120 PF01455 HupF/HypC family NRK98_06125 PF00708 Acylphosphatase NRK98_06125 PF01300 Telomere recombination NRK98_06125 PF17788 HypF Kae1-like domain NRK98_06125 PF07503 HypF finger NRK98_06130 PF00009 Elongation factor Tu GTP binding domain NRK98_06130 PF03144 Elongation factor Tu domain 2 NRK98_06130 PF09105 Elongation factor SelB, winged helix NRK98_06130 PF09106 Elongation factor SelB, winged helix NRK98_06130 PF09107 Elongation factor SelB, winged helix NRK98_06135 PF03841 L-seryl-tRNA selenium transferase NRK98_06135 PF12390 Selenocysteine synthase N terminal NRK98_06145 PF01750 Hydrogenase maturation protease NRK98_06150 PF07450 Formate hydrogenlyase maturation protein HycH NRK98_06155 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRK98_06160 PF12838 4Fe-4S dicluster domain NRK98_06165 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRK98_06165 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRK98_06165 PF00374 Nickel-dependent hydrogenase NRK98_06170 PF00146 NADH dehydrogenase NRK98_06175 PF00361 Proton-conducting membrane transporter NRK98_06180 PF12798 4Fe-4S binding domain NRK98_06180 PF00037 4Fe-4S binding domain NRK98_06185 PF02705 K+ potassium transporter NRK98_06195 PF13247 4Fe-4S dicluster domain NRK98_06195 PF12800 4Fe-4S binding domain NRK98_06210 PF01590 GAF domain NRK98_06210 PF02954 Bacterial regulatory protein, Fis family NRK98_06210 PF00158 Sigma-54 interaction domain NRK98_06215 PF02634 FdhD/NarQ family NRK98_06220 PF13662 Toprim domain NRK98_06220 PF02132 RecR protein NRK98_06225 PF00183 Hsp90 protein NRK98_06225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_06230 PF05191 Adenylate kinase, active site lid NRK98_06235 PF00762 Ferrochelatase NRK98_06240 PF01124 MAPEG family NRK98_06245 PF00294 pfkB family carbohydrate kinase NRK98_06260 PF00563 EAL domain NRK98_06260 PF00990 Diguanylate cyclase, GGDEF domain NRK98_06260 PF03707 Bacterial signalling protein N terminal repeat NRK98_06265 PF00483 Nucleotidyl transferase NRK98_06275 PF07273 Protein of unknown function (DUF1439) NRK98_06285 PF00425 chorismate binding enzyme NRK98_06290 PF13193 AMP-binding enzyme C-terminal domain NRK98_06290 PF00501 AMP-binding enzyme NRK98_06295 PF00857 Isochorismatase family NRK98_06295 PF00550 Phosphopantetheine attachment site NRK98_06300 PF00501 AMP-binding enzyme NRK98_06300 PF13193 AMP-binding enzyme C-terminal domain NRK98_06300 PF00668 Condensation domain NRK98_06300 PF00550 Phosphopantetheine attachment site NRK98_06300 PF00975 Thioesterase domain NRK98_06310 PF13193 AMP-binding enzyme C-terminal domain NRK98_06310 PF00668 Condensation domain NRK98_06310 PF07993 Male sterility protein NRK98_06310 PF00550 Phosphopantetheine attachment site NRK98_06310 PF00501 AMP-binding enzyme NRK98_06315 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK98_06315 PF16197 Ketoacyl-synthetase C-terminal extension NRK98_06315 PF00668 Condensation domain NRK98_06315 PF14765 Polyketide synthase dehydratase NRK98_06315 PF13193 AMP-binding enzyme C-terminal domain NRK98_06315 PF08659 KR domain NRK98_06315 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK98_06315 PF00550 Phosphopantetheine attachment site NRK98_06315 PF00501 AMP-binding enzyme NRK98_06320 PF01497 Periplasmic binding protein NRK98_06325 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NRK98_06325 PF01648 4'-phosphopantetheinyl transferase superfamily NRK98_06330 PF00005 ABC transporter NRK98_06335 PF01032 FecCD transport family NRK98_06340 PF01032 FecCD transport family NRK98_06345 PF07715 TonB-dependent Receptor Plug Domain NRK98_06345 PF00593 TonB dependent receptor NRK98_06360 PF11143 Protein of unknown function (DUF2919) NRK98_06365 PF01544 CorA-like Mg2+ transporter protein NRK98_06375 PF01012 Electron transfer flavoprotein domain NRK98_06380 PF00766 Electron transfer flavoprotein FAD-binding domain NRK98_06380 PF01012 Electron transfer flavoprotein domain NRK98_06385 PF00266 Aminotransferase class-V NRK98_06390 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRK98_06395 PF00793 DAHP synthetase I family NRK98_06400 PF00672 HAMP domain NRK98_06400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_06405 PF04055 Radical SAM superfamily NRK98_06410 PF02601 Exonuclease VII, large subunit NRK98_06410 PF13742 OB-fold nucleic acid binding domain NRK98_06415 PF00892 EamA-like transporter family NRK98_06420 PF02472 Biopolymer transport protein ExbD/TolR NRK98_06425 PF01618 MotA/TolQ/ExbB proton channel family NRK98_06435 PF02705 K+ potassium transporter NRK98_06440 PF00478 IMP dehydrogenase / GMP reductase domain NRK98_06440 PF00571 CBS domain NRK98_06445 PF02540 NAD synthase NRK98_06445 PF00958 GMP synthase C terminal domain NRK98_06445 PF00117 Glutamine amidotransferase class-I NRK98_06450 PF00589 Phage integrase family NRK98_06450 PF13356 Arm DNA-binding domain NRK98_06485 PF00899 ThiF family NRK98_06485 PF14461 Prokaryotic E2 family B NRK98_06515 PF13676 TIR domain NRK98_06520 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRK98_06520 PF02805 Metal binding domain of Ada NRK98_06520 PF12833 Helix-turn-helix domain NRK98_06520 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRK98_06535 PF05724 Thiopurine S-methyltransferase (TPMT) NRK98_06540 PF05193 Peptidase M16 inactive domain NRK98_06540 PF00675 Insulinase (Peptidase family M16) NRK98_06545 PF00300 Histidine phosphatase superfamily (branch 1) NRK98_06555 PF00892 EamA-like transporter family NRK98_06560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_06565 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NRK98_06570 PF17757 UvrB interaction domain NRK98_06570 PF03461 TRCF domain NRK98_06570 PF00271 Helicase conserved C-terminal domain NRK98_06570 PF00270 DEAD/DEAH box helicase NRK98_06570 PF02559 CarD-like/TRCF domain NRK98_06580 PF02687 FtsX-like permease family NRK98_06580 PF12704 MacB-like periplasmic core domain NRK98_06585 PF00005 ABC transporter NRK98_06590 PF12704 MacB-like periplasmic core domain NRK98_06590 PF02687 FtsX-like permease family NRK98_06605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK98_06605 PF05698 Bacterial trigger factor protein (TF) C-terminus NRK98_06605 PF05697 Bacterial trigger factor protein (TF) NRK98_06610 PF00574 Clp protease NRK98_06615 PF07724 AAA domain (Cdc48 subfamily) NRK98_06615 PF10431 C-terminal, D2-small domain, of ClpB protein NRK98_06615 PF06689 ClpX C4-type zinc finger NRK98_06620 PF05362 Lon protease (S16) C-terminal proteolytic domain NRK98_06620 PF02190 ATP-dependent protease La (LON) substrate-binding domain NRK98_06620 PF00004 ATPase family associated with various cellular activities (AAA) NRK98_06625 PF00216 Bacterial DNA-binding protein NRK98_06635 PF00005 ABC transporter NRK98_06635 PF12848 ABC transporter NRK98_06640 PF00474 Sodium:solute symporter family NRK98_06645 PF04341 Protein of unknown function, DUF485 NRK98_06660 PF00378 Enoyl-CoA hydratase/isomerase NRK98_06665 PF01235 Sodium:alanine symporter family NRK98_06675 PF06167 Glucose-regulated metallo-peptidase M90 NRK98_06680 PF01184 GPR1/FUN34/yaaH family NRK98_06695 PF09278 MerR, DNA binding NRK98_06695 PF00376 MerR family regulatory protein NRK98_06700 PF00682 HMGL-like NRK98_06705 PF00289 Biotin carboxylase, N-terminal domain NRK98_06705 PF02785 Biotin carboxylase C-terminal domain NRK98_06705 PF00364 Biotin-requiring enzyme NRK98_06705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRK98_06710 PF00378 Enoyl-CoA hydratase/isomerase NRK98_06715 PF01039 Carboxyl transferase domain NRK98_06720 PF02770 Acyl-CoA dehydrogenase, middle domain NRK98_06720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK98_06720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK98_06725 PF00171 Aldehyde dehydrogenase family NRK98_06730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK98_06730 PF02770 Acyl-CoA dehydrogenase, middle domain NRK98_06730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK98_06735 PF00378 Enoyl-CoA hydratase/isomerase NRK98_06740 PF00378 Enoyl-CoA hydratase/isomerase NRK98_06745 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRK98_06745 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRK98_06755 PF13520 Amino acid permease NRK98_06760 PF01925 Sulfite exporter TauE/SafE NRK98_06770 PF03466 LysR substrate binding domain NRK98_06770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_06775 PF12146 Serine aminopeptidase, S33 NRK98_06780 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NRK98_06780 PF07676 WD40-like Beta Propeller Repeat NRK98_06780 PF00326 Prolyl oligopeptidase family NRK98_06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_06790 PF03466 LysR substrate binding domain NRK98_06800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK98_06800 PF00072 Response regulator receiver domain NRK98_06800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_06800 PF00672 HAMP domain NRK98_06800 PF01627 Hpt domain NRK98_06800 PF00512 His Kinase A (phospho-acceptor) domain NRK98_06810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_06810 PF03466 LysR substrate binding domain NRK98_06815 PF00232 Glycosyl hydrolase family 1 NRK98_06820 PF01966 HD domain NRK98_06830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_06830 PF03466 LysR substrate binding domain NRK98_06835 PF01261 Xylose isomerase-like TIM barrel NRK98_06840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRK98_06840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRK98_06845 PF03466 LysR substrate binding domain NRK98_06845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_06855 PF03279 Bacterial lipid A biosynthesis acyltransferase NRK98_06860 PF03279 Bacterial lipid A biosynthesis acyltransferase NRK98_06875 PF00990 Diguanylate cyclase, GGDEF domain NRK98_06885 PF00136 DNA polymerase family B NRK98_06885 PF03104 DNA polymerase family B, exonuclease domain NRK98_06915 PF01554 MatE NRK98_06920 PF06786 Uncharacterised protein family (UPF0253) NRK98_06925 PF00677 Lumazine binding domain NRK98_06935 PF13419 Haloacid dehalogenase-like hydrolase NRK98_06940 PF02222 ATP-grasp domain NRK98_06940 PF01370 NAD dependent epimerase/dehydratase family NRK98_06945 PF00892 EamA-like transporter family NRK98_06950 PF02525 Flavodoxin-like fold NRK98_06975 PF17783 CvfB-like winged helix domain NRK98_06975 PF13509 S1 domain NRK98_06985 PF04269 Protein of unknown function, DUF440 NRK98_06995 PF00912 Transglycosylase NRK98_07000 PF04269 Protein of unknown function, DUF440 NRK98_07005 PF03776 Septum formation topological specificity factor MinE NRK98_07010 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NRK98_07015 PF05209 Septum formation inhibitor MinC, N-terminal domain NRK98_07015 PF03775 Septum formation inhibitor MinC, C-terminal domain NRK98_07020 PF05166 YcgL domain NRK98_07025 PF13406 Transglycosylase SLT domain NRK98_07030 PF03313 Serine dehydratase alpha chain NRK98_07030 PF03315 Serine dehydratase beta chain NRK98_07035 PF03313 Serine dehydratase alpha chain NRK98_07035 PF03315 Serine dehydratase beta chain NRK98_07040 PF06865 Pyrimidine/purine nucleoside phosphorylase NRK98_07045 PF00375 Sodium:dicarboxylate symporter family NRK98_07050 PF09278 MerR, DNA binding NRK98_07050 PF00376 MerR family regulatory protein NRK98_07055 PF02803 Thiolase, C-terminal domain NRK98_07055 PF00108 Thiolase, N-terminal domain NRK98_07060 PF00563 EAL domain NRK98_07060 PF08668 HDOD domain NRK98_07065 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRK98_07070 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRK98_07080 PF04542 Sigma-70 region 2 NRK98_07080 PF08281 Sigma-70, region 4 NRK98_07105 PF01882 Protein of unknown function DUF58 NRK98_07110 PF07726 ATPase family associated with various cellular activities (AAA) NRK98_07110 PF17863 AAA lid domain NRK98_07115 PF00108 Thiolase, N-terminal domain NRK98_07115 PF02803 Thiolase, C-terminal domain NRK98_07120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRK98_07120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRK98_07120 PF00378 Enoyl-CoA hydratase/isomerase NRK98_07130 PF07152 YaeQ protein NRK98_07140 PF02954 Bacterial regulatory protein, Fis family NRK98_07140 PF13188 PAS domain NRK98_07140 PF00158 Sigma-54 interaction domain NRK98_07145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRK98_07145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRK98_07150 PF00291 Pyridoxal-phosphate dependent enzyme NRK98_07155 PF01546 Peptidase family M20/M25/M40 NRK98_07155 PF07687 Peptidase dimerisation domain NRK98_07160 PF01979 Amidohydrolase family NRK98_07165 PF00696 Amino acid kinase family NRK98_07170 PF00892 EamA-like transporter family NRK98_07175 PF13478 XdhC Rossmann domain NRK98_07175 PF02625 XdhC and CoxI family NRK98_07185 PF12804 MobA-like NTP transferase domain NRK98_07190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRK98_07190 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_07195 PF01979 Amidohydrolase family NRK98_07200 PF00941 FAD binding domain in molybdopterin dehydrogenase NRK98_07205 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRK98_07205 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRK98_07205 PF01799 [2Fe-2S] binding domain NRK98_07210 PF00860 Permease family NRK98_07215 PF01979 Amidohydrolase family NRK98_07220 PF00860 Permease family NRK98_07225 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRK98_07225 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRK98_07230 PF03450 CO dehydrogenase flavoprotein C-terminal domain NRK98_07230 PF00941 FAD binding domain in molybdopterin dehydrogenase NRK98_07235 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK98_07235 PF01799 [2Fe-2S] binding domain NRK98_07245 PF05433 Glycine zipper 2TM domain NRK98_07255 PF03606 C4-dicarboxylate anaerobic carrier NRK98_07260 PF00501 AMP-binding enzyme NRK98_07260 PF13193 AMP-binding enzyme C-terminal domain NRK98_07270 PF01502 Phosphoribosyl-AMP cyclohydrolase NRK98_07270 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NRK98_07275 PF00977 Histidine biosynthesis protein NRK98_07280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_07280 PF01627 Hpt domain NRK98_07280 PF00072 Response regulator receiver domain NRK98_07280 PF00512 His Kinase A (phospho-acceptor) domain NRK98_07285 PF00990 Diguanylate cyclase, GGDEF domain NRK98_07285 PF08448 PAS fold NRK98_07290 PF00072 Response regulator receiver domain NRK98_07295 PF00977 Histidine biosynthesis protein NRK98_07300 PF00117 Glutamine amidotransferase class-I NRK98_07305 PF08645 Polynucleotide kinase 3 phosphatase NRK98_07305 PF00475 Imidazoleglycerol-phosphate dehydratase NRK98_07310 PF00155 Aminotransferase class I and II NRK98_07315 PF00815 Histidinol dehydrogenase NRK98_07320 PF01634 ATP phosphoribosyltransferase NRK98_07320 PF08029 HisG, C-terminal domain NRK98_07330 PF13307 Helicase C-terminal domain NRK98_07330 PF04851 Type III restriction enzyme, res subunit NRK98_07335 PF00814 Glycoprotease family NRK98_07345 PF12697 Alpha/beta hydrolase family NRK98_07350 PF00501 AMP-binding enzyme NRK98_07350 PF13193 AMP-binding enzyme C-terminal domain NRK98_07355 PF01612 3'-5' exonuclease NRK98_07355 PF00570 HRDC domain NRK98_07360 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_07370 PF01207 Dihydrouridine synthase (Dus) NRK98_07375 PF04304 Protein of unknown function (DUF454) NRK98_07380 PF00156 Phosphoribosyl transferase domain NRK98_07385 PF12170 DNA polymerase III tau subunit V interacting with alpha NRK98_07385 PF12169 DNA polymerase III subunits gamma and tau domain III NRK98_07385 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NRK98_07390 PF02575 YbaB/EbfC DNA-binding family NRK98_07395 PF00141 Peroxidase NRK98_07405 PF07670 Nucleoside recognition NRK98_07410 PF00196 Bacterial regulatory proteins, luxR family NRK98_07410 PF00072 Response regulator receiver domain NRK98_07415 PF00571 CBS domain NRK98_07415 PF01368 DHH family NRK98_07415 PF02272 DHHA1 domain NRK98_07415 PF01743 Poly A polymerase head domain NRK98_07420 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NRK98_07420 PF00271 Helicase conserved C-terminal domain NRK98_07420 PF11898 Domain of unknown function (DUF3418) NRK98_07420 PF00270 DEAD/DEAH box helicase NRK98_07420 PF04408 Helicase associated domain (HA2) NRK98_07430 PF01386 Ribosomal L25p family NRK98_07435 PF00672 HAMP domain NRK98_07435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_07435 PF00512 His Kinase A (phospho-acceptor) domain NRK98_07435 PF01627 Hpt domain NRK98_07435 PF00072 Response regulator receiver domain NRK98_07435 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK98_07440 PF00072 Response regulator receiver domain NRK98_07445 PF00753 Metallo-beta-lactamase superfamily NRK98_07455 PF00586 AIR synthase related protein, N-terminal domain NRK98_07455 PF02769 AIR synthase related protein, C-terminal domain NRK98_07475 PF17785 PUA-like domain NRK98_07475 PF10672 S-adenosylmethionine-dependent methyltransferase NRK98_07485 PF00669 Bacterial flagellin N-terminal helical region NRK98_07485 PF07196 Flagellin hook IN motif NRK98_07485 PF00700 Bacterial flagellin C-terminal helical region NRK98_07490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_07490 PF12729 Four helix bundle sensory module for signal transduction NRK98_07490 PF00672 HAMP domain NRK98_07495 PF00708 Acylphosphatase NRK98_07500 PF00043 Glutathione S-transferase, C-terminal domain NRK98_07500 PF02798 Glutathione S-transferase, N-terminal domain NRK98_07505 PF08264 Anticodon-binding domain of tRNA NRK98_07505 PF09334 tRNA synthetases class I (M) NRK98_07505 PF01588 Putative tRNA binding domain NRK98_07510 PF10609 NUBPL iron-transfer P-loop NTPase NRK98_07515 PF00485 Phosphoribulokinase / Uridine kinase family NRK98_07520 PF00692 dUTPase NRK98_07525 PF01384 Phosphate transporter family NRK98_07530 PF12111 Polyribonucleotide phosphorylase C terminal NRK98_07530 PF10150 Ribonuclease E/G family NRK98_07530 PF00575 S1 RNA binding domain NRK98_07535 PF00849 RNA pseudouridylate synthase NRK98_07535 PF01479 S4 domain NRK98_07540 PF13419 Haloacid dehalogenase-like hydrolase NRK98_07545 PF02545 Maf-like protein NRK98_07555 PF02620 Large ribosomal RNA subunit accumulation protein YceD NRK98_07560 PF01783 Ribosomal L32p protein family NRK98_07565 PF02504 Fatty acid synthesis protein NRK98_07570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRK98_07570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRK98_07575 PF00698 Acyl transferase domain NRK98_07585 PF00550 Phosphopantetheine attachment site NRK98_07590 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK98_07590 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK98_07595 PF01063 Amino-transferase class IV NRK98_07600 PF02618 YceG-like family NRK98_07605 PF02223 Thymidylate kinase NRK98_07610 PF09115 DNA polymerase III, delta subunit, C terminal NRK98_07615 PF01026 TatD related DNase NRK98_07620 PF00589 Phage integrase family NRK98_07630 PF01189 16S rRNA methyltransferase RsmB/F NRK98_07630 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NRK98_07630 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NRK98_07635 PF02470 MlaD protein NRK98_07640 PF04403 Paraquat-inducible protein A NRK98_07655 PF00285 Citrate synthase, C-terminal domain NRK98_07660 PF03972 MmgE/PrpD family NRK98_07675 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NRK98_07675 PF06974 Protein of unknown function (DUF1298) NRK98_07700 PF00106 short chain dehydrogenase NRK98_07710 PF07130 YebG protein NRK98_07720 PF13654 AAA domain NRK98_07720 PF05362 Lon protease (S16) C-terminal proteolytic domain NRK98_07725 PF07977 FabA-like domain NRK98_07730 PF04957 Ribosome modulation factor NRK98_07740 PF00005 ABC transporter NRK98_07740 PF16326 ABC transporter C-terminal domain NRK98_07740 PF12848 ABC transporter NRK98_07750 PF02926 THUMP domain NRK98_07750 PF01170 Putative RNA methylase family UPF0020 NRK98_07750 PF10672 S-adenosylmethionine-dependent methyltransferase NRK98_07755 PF07126 Cell-division protein ZapC NRK98_07760 PF01180 Dihydroorotate dehydrogenase NRK98_07765 PF05088 Bacterial NAD-glutamate dehydrogenase NRK98_07775 PF11940 Domain of unknown function (DUF3458) Ig-like fold NRK98_07775 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NRK98_07775 PF01433 Peptidase family M1 domain NRK98_07780 PF00595 PDZ domain NRK98_07780 PF17804 Tail specific protease N-terminal domain NRK98_07780 PF11818 C-terminal domain of tail specific protease (DUF3340) NRK98_07780 PF03572 Peptidase family S41 NRK98_07785 PF04352 ProQ/FINO family NRK98_07785 PF17516 ProQ C-terminal domain NRK98_07790 PF13185 GAF domain NRK98_07800 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRK98_07815 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NRK98_07815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRK98_07825 PF00403 Heavy-metal-associated domain NRK98_07840 PF00027 Cyclic nucleotide-binding domain NRK98_07840 PF13545 Crp-like helix-turn-helix domain NRK98_07845 PF00582 Universal stress protein family NRK98_07850 PF01171 PP-loop family NRK98_07865 PF02798 Glutathione S-transferase, N-terminal domain NRK98_07865 PF00043 Glutathione S-transferase, C-terminal domain NRK98_07870 PF05025 RbsD / FucU transport protein family NRK98_07875 PF00005 ABC transporter NRK98_07880 PF02653 Branched-chain amino acid transport system / permease component NRK98_07885 PF13407 Periplasmic binding protein domain NRK98_07890 PF00294 pfkB family carbohydrate kinase NRK98_07895 PF00356 Bacterial regulatory proteins, lacI family NRK98_07900 PF00990 Diguanylate cyclase, GGDEF domain NRK98_07900 PF17152 Periplasmic sensor domain NRK98_07925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_07925 PF00512 His Kinase A (phospho-acceptor) domain NRK98_07925 PF09456 RcsC Alpha-Beta-Loop (ABL) NRK98_07925 PF00072 Response regulator receiver domain NRK98_07930 PF00216 Bacterial DNA-binding protein NRK98_07935 PF03147 Ferredoxin-fold anticodon binding domain NRK98_07935 PF01588 Putative tRNA binding domain NRK98_07935 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NRK98_07935 PF03484 tRNA synthetase B5 domain NRK98_07935 PF03483 B3/4 domain NRK98_07940 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NRK98_07940 PF01409 tRNA synthetases class II core domain (F) NRK98_07945 PF00453 Ribosomal protein L20 NRK98_07950 PF01632 Ribosomal protein L35 NRK98_07955 PF05198 Translation initiation factor IF-3, N-terminal domain NRK98_07955 PF00707 Translation initiation factor IF-3, C-terminal domain NRK98_07960 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRK98_07960 PF02824 TGS domain NRK98_07960 PF03129 Anticodon binding domain NRK98_07960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRK98_07970 PF04055 Radical SAM superfamily NRK98_07980 PF00521 DNA gyrase/topoisomerase IV, subunit A NRK98_07980 PF03989 DNA gyrase C-terminal domain, beta-propeller NRK98_07990 PF13419 Haloacid dehalogenase-like hydrolase NRK98_07995 PF00317 Ribonucleotide reductase, all-alpha domain NRK98_07995 PF02867 Ribonucleotide reductase, barrel domain NRK98_07995 PF03477 ATP cone domain NRK98_08000 PF00268 Ribonucleotide reductase, small chain NRK98_08005 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK98_08010 PF06725 3D domain NRK98_08010 PF03562 MltA specific insert domain NRK98_08015 PF06945 Protein of unknown function (DUF1289) NRK98_08020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRK98_08020 PF02378 Phosphotransferase system, EIIC NRK98_08025 PF00294 pfkB family carbohydrate kinase NRK98_08030 PF00381 PTS HPr component phosphorylation site NRK98_08030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK98_08035 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK98_08035 PF00356 Bacterial regulatory proteins, lacI family NRK98_08040 PF03222 Tryptophan/tyrosine permease family NRK98_08055 PF00270 DEAD/DEAH box helicase NRK98_08055 PF00271 Helicase conserved C-terminal domain NRK98_08065 PF01264 Chorismate synthase NRK98_08070 PF05175 Methyltransferase small domain NRK98_08075 PF01713 Smr domain NRK98_08085 PF00990 Diguanylate cyclase, GGDEF domain NRK98_08085 PF08448 PAS fold NRK98_08105 PF08329 Chitinase A, N-terminal domain NRK98_08105 PF00704 Glycosyl hydrolases family 18 NRK98_08115 PF03831 PhnA domain NRK98_08115 PF08274 PhnA Zinc-Ribbon NRK98_08130 PF02567 Phenazine biosynthesis-like protein NRK98_08155 PF01327 Polypeptide deformylase NRK98_08180 PF03330 Lytic transglycolase NRK98_08180 PF05036 Sporulation related domain NRK98_08185 PF04310 MukB N-terminal NRK98_08185 PF16330 MukB hinge domain NRK98_08190 PF04288 MukE-like family NRK98_08195 PF17192 MukF middle domain NRK98_08195 PF17193 MukF C-terminal domain NRK98_08195 PF03882 MukF winged-helix domain NRK98_08200 PF13847 Methyltransferase domain NRK98_08205 PF02698 DUF218 domain NRK98_08210 PF00121 Triosephosphate isomerase NRK98_08215 PF00365 Phosphofructokinase NRK98_08220 PF07687 Peptidase dimerisation domain NRK98_08220 PF01546 Peptidase family M20/M25/M40 NRK98_08225 PF13419 Haloacid dehalogenase-like hydrolase NRK98_08230 PF00883 Cytosol aminopeptidase family, catalytic domain NRK98_08230 PF02789 Cytosol aminopeptidase family, N-terminal domain NRK98_08250 PF00128 Alpha amylase, catalytic domain NRK98_08250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRK98_08260 PF11398 Protein of unknown function (DUF2813) NRK98_08265 PF12833 Helix-turn-helix domain NRK98_08265 PF14525 AraC-binding-like domain NRK98_08275 PF03466 LysR substrate binding domain NRK98_08275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_08280 PF01925 Sulfite exporter TauE/SafE NRK98_08285 PF03942 DTW domain NRK98_08290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK98_08290 PF18029 Glyoxalase-like domain NRK98_08295 PF07478 D-ala D-ala ligase C-terminus NRK98_08295 PF01820 D-ala D-ala ligase N-terminus NRK98_08305 PF00255 Glutathione peroxidase NRK98_08310 PF00270 DEAD/DEAH box helicase NRK98_08310 PF00271 Helicase conserved C-terminal domain NRK98_08315 PF13673 Acetyltransferase (GNAT) domain NRK98_08330 PF01928 CYTH domain NRK98_08340 PF00583 Acetyltransferase (GNAT) family NRK98_08345 PF00465 Iron-containing alcohol dehydrogenase NRK98_08350 PF03992 Antibiotic biosynthesis monooxygenase NRK98_08355 PF08543 Phosphomethylpyrimidine kinase NRK98_08375 PF00561 alpha/beta hydrolase fold NRK98_08375 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NRK98_08380 PF01575 MaoC like domain NRK98_08400 PF00005 ABC transporter NRK98_08400 PF00664 ABC transporter transmembrane region NRK98_08405 PF00664 ABC transporter transmembrane region NRK98_08405 PF00005 ABC transporter NRK98_08410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK98_08410 PF00072 Response regulator receiver domain NRK98_08410 PF01627 Hpt domain NRK98_08410 PF00512 His Kinase A (phospho-acceptor) domain NRK98_08410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_08410 PF00672 HAMP domain NRK98_08415 PF00085 Thioredoxin NRK98_08420 PF00939 Sodium:sulfate symporter transmembrane region NRK98_08425 PF00343 Carbohydrate phosphorylase NRK98_08450 PF04715 Anthranilate synthase component I, N terminal region NRK98_08450 PF00425 chorismate binding enzyme NRK98_08455 PF00293 NUDIX domain NRK98_08460 PF03222 Tryptophan/tyrosine permease family NRK98_08465 PF00375 Sodium:dicarboxylate symporter family NRK98_08470 PF09382 RQC domain NRK98_08470 PF00570 HRDC domain NRK98_08470 PF00271 Helicase conserved C-terminal domain NRK98_08470 PF00270 DEAD/DEAH box helicase NRK98_08470 PF16124 RecQ zinc-binding NRK98_08475 PF06798 PrkA serine protein kinase C-terminal domain NRK98_08475 PF08298 PrkA AAA domain NRK98_08480 PF04285 Protein of unknown function (DUF444) NRK98_08485 PF04293 SpoVR like protein NRK98_08490 PF07840 FadR C-terminal domain NRK98_08490 PF00392 Bacterial regulatory proteins, gntR family NRK98_08495 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NRK98_08500 PF02600 Disulfide bond formation protein DsbB NRK98_08505 PF09335 SNARE associated Golgi protein NRK98_08515 PF17757 UvrB interaction domain NRK98_08515 PF12344 Ultra-violet resistance protein B NRK98_08515 PF02151 UvrB/uvrC motif NRK98_08515 PF00271 Helicase conserved C-terminal domain NRK98_08515 PF04851 Type III restriction enzyme, res subunit NRK98_08525 PF02080 TrkA-C domain NRK98_08525 PF06826 Predicted Permease Membrane Region NRK98_08530 PF01464 Transglycosylase SLT domain NRK98_08530 PF10145 Phage-related minor tail protein NRK98_08530 PF01551 Peptidase family M23 NRK98_08535 PF03401 Tripartite tricarboxylate transporter family receptor NRK98_08545 PF01970 Tripartite tricarboxylate transporter TctA family NRK98_08550 PF08279 HTH domain NRK98_08550 PF00072 Response regulator receiver domain NRK98_08550 PF12431 Transcriptional regulator NRK98_08555 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRK98_08555 PF17203 Single cache domain 3 NRK98_08555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_08555 PF00989 PAS fold NRK98_08560 PF01047 MarR family NRK98_08560 PF00480 ROK family NRK98_08565 PF17200 Single Cache domain 2 NRK98_08565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_08565 PF00672 HAMP domain NRK98_08570 PF02810 SEC-C motif NRK98_08575 PF04324 BFD-like [2Fe-2S] binding domain NRK98_08575 PF01266 FAD dependent oxidoreductase NRK98_08580 PF00890 FAD binding domain NRK98_08585 PF02754 Cysteine-rich domain NRK98_08585 PF13183 4Fe-4S dicluster domain NRK98_08590 PF02335 Cytochrome c552 NRK98_08595 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRK98_08595 PF13435 Cytochrome c554 and c-prime NRK98_08600 PF00037 4Fe-4S binding domain NRK98_08600 PF13247 4Fe-4S dicluster domain NRK98_08605 PF03916 Polysulphide reductase, NrfD NRK98_08610 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRK98_08610 PF01578 Cytochrome C assembly protein NRK98_08615 PF08534 Redoxin NRK98_08620 PF03918 Cytochrome C biogenesis protein NRK98_08630 PF00768 D-alanyl-D-alanine carboxypeptidase NRK98_08635 PF01212 Beta-eliminating lyase NRK98_08645 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NRK98_08650 PF01266 FAD dependent oxidoreductase NRK98_08660 PF07969 Amidohydrolase family NRK98_08675 PF00816 H-NS histone family NRK98_08685 PF00478 IMP dehydrogenase / GMP reductase domain NRK98_08685 PF00571 CBS domain NRK98_08700 PF08267 Cobalamin-independent synthase, N-terminal domain NRK98_08700 PF01717 Cobalamin-independent synthase, Catalytic domain NRK98_08705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_08705 PF03466 LysR substrate binding domain NRK98_08715 PF07715 TonB-dependent Receptor Plug Domain NRK98_08715 PF00593 TonB dependent receptor NRK98_08720 PF12833 Helix-turn-helix domain NRK98_08725 PF00106 short chain dehydrogenase NRK98_08730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_08730 PF03466 LysR substrate binding domain NRK98_08735 PF13460 NAD(P)H-binding NRK98_08745 PF01053 Cys/Met metabolism PLP-dependent enzyme NRK98_08750 PF05193 Peptidase M16 inactive domain NRK98_08750 PF00675 Insulinase (Peptidase family M16) NRK98_08755 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRK98_08755 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRK98_08760 PF00893 Small Multidrug Resistance protein NRK98_08765 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NRK98_08765 PF18381 YcaO cyclodehydratase C-terminal domain NRK98_08770 PF01226 Formate/nitrite transporter NRK98_08775 PF01228 Glycine radical NRK98_08775 PF02901 Pyruvate formate lyase-like NRK98_08785 PF00202 Aminotransferase class-III NRK98_08790 PF00266 Aminotransferase class-V NRK98_08795 PF00392 Bacterial regulatory proteins, gntR family NRK98_08795 PF07702 UTRA domain NRK98_08805 PF00005 ABC transporter NRK98_08810 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_08815 PF01266 FAD dependent oxidoreductase NRK98_08820 PF03692 Putative zinc- or iron-chelating domain NRK98_08830 PF02629 CoA binding domain NRK98_08830 PF00549 CoA-ligase NRK98_08835 PF08442 ATP-grasp domain NRK98_08835 PF00549 CoA-ligase NRK98_08840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRK98_08840 PF00364 Biotin-requiring enzyme NRK98_08840 PF02817 e3 binding domain NRK98_08845 PF02779 Transketolase, pyrimidine binding domain NRK98_08845 PF16870 2-oxoglutarate dehydrogenase C-terminal NRK98_08845 PF00676 Dehydrogenase E1 component NRK98_08845 PF16078 2-oxoglutarate dehydrogenase N-terminus NRK98_08850 PF13085 2Fe-2S iron-sulfur cluster binding domain NRK98_08855 PF00890 FAD binding domain NRK98_08855 PF02910 Fumarate reductase flavoprotein C-term NRK98_08860 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRK98_08865 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRK98_08870 PF00285 Citrate synthase, C-terminal domain NRK98_08885 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK98_08885 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK98_08890 PF01266 FAD dependent oxidoreductase NRK98_08890 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NRK98_08900 PF03606 C4-dicarboxylate anaerobic carrier NRK98_08915 PF01863 Protein of unknown function DUF45 NRK98_08930 PF01197 Ribosomal protein L31 NRK98_08935 PF00444 Ribosomal protein L36 NRK98_08940 PF02678 Pirin NRK98_08940 PF05726 Pirin C-terminal cupin domain NRK98_08945 PF03466 LysR substrate binding domain NRK98_08945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_08990 PF01548 Transposase NRK98_08990 PF02371 Transposase IS116/IS110/IS902 family NRK98_09020 PF18766 SWI2/SNF2 ATPase NRK98_09020 PF11867 Domain of unknown function (DUF3387) NRK98_09020 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NRK98_09025 PF13086 AAA domain NRK98_09025 PF13087 AAA domain NRK98_09025 PF13195 Protein of unknown function (DUF4011) NRK98_09025 PF13195 Protein of unknown function (DUF4011) NRK98_09025 PF13086 AAA domain NRK98_09025 PF13087 AAA domain NRK98_09045 PF12161 HsdM N-terminal domain NRK98_09045 PF02384 N-6 DNA Methylase NRK98_09055 PF02146 Sir2 family NRK98_09070 PF08411 Exonuclease C-terminal NRK98_09070 PF00929 Exonuclease NRK98_09085 PF03788 LrgA family NRK98_09090 PF04172 LrgB-like family NRK98_09095 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NRK98_09095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRK98_09100 PF00501 AMP-binding enzyme NRK98_09105 PF08891 YfcL protein NRK98_09115 PF03741 Integral membrane protein TerC family NRK98_09120 PF00691 OmpA family NRK98_09125 PF03707 Bacterial signalling protein N terminal repeat NRK98_09125 PF00563 EAL domain NRK98_09125 PF00990 Diguanylate cyclase, GGDEF domain NRK98_09130 PF13689 YfiR/HmsC-like NRK98_09135 PF00158 Sigma-54 interaction domain NRK98_09135 PF18024 Helix-turn-helix domain NRK98_09140 PF01329 Pterin 4 alpha carbinolamine dehydratase NRK98_09145 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NRK98_09150 PF05128 Domain of unknown function (DUF697) NRK98_09155 PF04317 YcjX-like family, DUF463 NRK98_09165 PF06667 Phage shock protein B NRK98_09170 PF04012 PspA/IM30 family NRK98_09175 PF02954 Bacterial regulatory protein, Fis family NRK98_09175 PF00158 Sigma-54 interaction domain NRK98_09180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_09185 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_09190 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_09190 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK98_09195 PF00005 ABC transporter NRK98_09195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK98_09200 PF00005 ABC transporter NRK98_09205 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NRK98_09210 PF00156 Phosphoribosyl transferase domain NRK98_09215 PF02674 Colicin V production protein NRK98_09220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRK98_09220 PF02403 Seryl-tRNA synthetase N-terminal domain NRK98_09225 PF16193 AAA C-terminal domain NRK98_09225 PF00004 ATPase family associated with various cellular activities (AAA) NRK98_09225 PF12002 MgsA AAA+ ATPase C terminal NRK98_09230 PF03548 Outer membrane lipoprotein carrier protein LolA NRK98_09235 PF17854 FtsK alpha domain NRK98_09235 PF01580 FtsK/SpoIIIE family NRK98_09235 PF09397 Ftsk gamma domain NRK98_09235 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NRK98_09240 PF01037 Lrp/AsnC ligand binding domain NRK98_09245 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_09250 PF17158 Membrane-associated sensor, integral membrane domain NRK98_09250 PF00990 Diguanylate cyclase, GGDEF domain NRK98_09255 PF05433 Glycine zipper 2TM domain NRK98_09260 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NRK98_09265 PF04377 Arginine-tRNA-protein transferase, C terminus NRK98_09265 PF04376 Arginine-tRNA-protein transferase, N terminus NRK98_09270 PF01176 Translation initiation factor 1A / IF-1 NRK98_09275 PF10431 C-terminal, D2-small domain, of ClpB protein NRK98_09275 PF00004 ATPase family associated with various cellular activities (AAA) NRK98_09275 PF07724 AAA domain (Cdc48 subfamily) NRK98_09275 PF02861 Clp amino terminal domain, pathogenicity island component NRK98_09275 PF17871 AAA lid domain NRK98_09280 PF02617 ATP-dependent Clp protease adaptor protein ClpS NRK98_09285 PF00313 'Cold-shock' DNA-binding domain NRK98_09290 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NRK98_09290 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NRK98_09360 PF04717 Type VI secretion system, phage-baseplate injector NRK98_09375 PF06761 Intracellular multiplication and human macrophage-killing NRK98_09375 PF14331 ImcF-related N-terminal domain NRK98_09375 PF06744 Type VI secretion protein IcmF C-terminal NRK98_09390 PF02954 Bacterial regulatory protein, Fis family NRK98_09390 PF00158 Sigma-54 interaction domain NRK98_09395 PF00004 ATPase family associated with various cellular activities (AAA) NRK98_09395 PF10431 C-terminal, D2-small domain, of ClpB protein NRK98_09395 PF17871 AAA lid domain NRK98_09395 PF07724 AAA domain (Cdc48 subfamily) NRK98_09405 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NRK98_09425 PF05947 Type VI secretion system, TssF NRK98_09435 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NRK98_09465 PF04717 Type VI secretion system, phage-baseplate injector NRK98_09470 PF05638 Type VI secretion system effector, Hcp NRK98_09495 PF04717 Type VI secretion system, phage-baseplate injector NRK98_09505 PF05638 Type VI secretion system effector, Hcp NRK98_09515 PF10722 Putative bacterial sensory transduction regulator NRK98_09525 PF00265 Thymidine kinase NRK98_09530 PF03553 Na+/H+ antiporter family NRK98_09535 PF00816 H-NS histone family NRK98_09540 PF01923 Cobalamin adenosyltransferase NRK98_09545 PF12843 Putative quorum-sensing-regulated virulence factor NRK98_09550 PF04055 Radical SAM superfamily NRK98_09555 PF06508 Queuosine biosynthesis protein QueC NRK98_09570 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NRK98_09575 PF18073 Rubredoxin metal binding domain NRK98_09585 PF00216 Bacterial DNA-binding protein NRK98_09590 PF00575 S1 RNA binding domain NRK98_09595 PF02224 Cytidylate kinase NRK98_09600 PF00925 GTP cyclohydrolase II NRK98_09605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_09605 PF03466 LysR substrate binding domain NRK98_09610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_09610 PF03466 LysR substrate binding domain NRK98_09615 PF07690 Major Facilitator Superfamily NRK98_09630 PF00881 Nitroreductase family NRK98_09635 PF13188 PAS domain NRK98_09635 PF03707 Bacterial signalling protein N terminal repeat NRK98_09635 PF00563 EAL domain NRK98_09635 PF00990 Diguanylate cyclase, GGDEF domain NRK98_09645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_09645 PF03466 LysR substrate binding domain NRK98_09650 PF00072 Response regulator receiver domain NRK98_09660 PF01212 Beta-eliminating lyase NRK98_09675 PF00248 Aldo/keto reductase family NRK98_09680 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NRK98_09690 PF03411 Penicillin-insensitive murein endopeptidase NRK98_09700 PF04536 TPM domain NRK98_09720 PF01618 MotA/TolQ/ExbB proton channel family NRK98_09725 PF00691 OmpA family NRK98_09725 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRK98_09730 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NRK98_09735 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRK98_09740 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRK98_09740 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRK98_09750 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRK98_09750 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRK98_09755 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRK98_09755 PF00384 Molybdopterin oxidoreductase NRK98_09755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK98_09760 PF00146 NADH dehydrogenase NRK98_09765 PF12838 4Fe-4S dicluster domain NRK98_09770 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NRK98_09775 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NRK98_09780 PF00361 Proton-conducting membrane transporter NRK98_09780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NRK98_09785 PF00361 Proton-conducting membrane transporter NRK98_09790 PF00361 Proton-conducting membrane transporter NRK98_09800 PF00072 Response regulator receiver domain NRK98_09805 PF01966 HD domain NRK98_09810 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NRK98_09810 PF02769 AIR synthase related protein, C-terminal domain NRK98_09810 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NRK98_09815 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_09815 PF01464 Transglycosylase SLT domain NRK98_09820 PF07191 zinc-ribbons NRK98_09825 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NRK98_09825 PF01926 50S ribosome-binding GTPase NRK98_09830 PF13360 PQQ-like domain NRK98_09835 PF09976 Tetratricopeptide repeat-like domain NRK98_09840 PF03129 Anticodon binding domain NRK98_09840 PF13393 Histidyl-tRNA synthetase NRK98_09845 PF04551 GcpE protein NRK98_09850 PF13464 Domain of unknown function (DUF4115) NRK98_09860 PF04055 Radical SAM superfamily NRK98_09865 PF00334 Nucleoside diphosphate kinase NRK98_09870 PF12404 Peptidase NRK98_09870 PF00883 Cytosol aminopeptidase family, catalytic domain NRK98_09875 PF12404 Peptidase NRK98_09875 PF00883 Cytosol aminopeptidase family, catalytic domain NRK98_09880 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK98_09885 PF00012 Hsp70 protein NRK98_09890 PF07743 HSCB C-terminal oligomerisation domain NRK98_09895 PF01521 Iron-sulphur cluster biosynthesis NRK98_09900 PF01592 NifU-like N terminal domain NRK98_09905 PF00266 Aminotransferase class-V NRK98_09910 PF02082 Transcriptional regulator NRK98_09915 PF00588 SpoU rRNA Methylase family NRK98_09925 PF02036 SCP-2 sterol transfer family NRK98_09930 PF01136 Peptidase family U32 NRK98_09935 PF01136 Peptidase family U32 NRK98_09940 PF13181 Tetratricopeptide repeat NRK98_09940 PF07719 Tetratricopeptide repeat NRK98_09950 PF07549 SecD/SecF GG Motif NRK98_09950 PF02355 Protein export membrane protein NRK98_09955 PF07549 SecD/SecF GG Motif NRK98_09955 PF13721 SecD export protein N-terminal TM region NRK98_09955 PF02355 Protein export membrane protein NRK98_09960 PF02699 Preprotein translocase subunit NRK98_09965 PF01702 Queuine tRNA-ribosyltransferase NRK98_09970 PF02547 Queuosine biosynthesis protein NRK98_09975 PF00571 CBS domain NRK98_09980 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRK98_09980 PF00578 AhpC/TSA family NRK98_09985 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_09985 PF13192 Thioredoxin domain NRK98_09990 PF07690 Major Facilitator Superfamily NRK98_09995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_09995 PF00989 PAS fold NRK98_09995 PF00512 His Kinase A (phospho-acceptor) domain NRK98_10005 PF08241 Methyltransferase domain NRK98_10010 PF00884 Sulfatase NRK98_10015 PF04055 Radical SAM superfamily NRK98_10015 PF13186 Iron-sulfur cluster-binding domain NRK98_10020 PF02909 Tetracyclin repressor-like, C-terminal domain NRK98_10020 PF00440 Bacterial regulatory proteins, tetR family NRK98_10025 PF07690 Major Facilitator Superfamily NRK98_10030 PF09722 Protein of unknown function (DUF2384) NRK98_10055 PF00665 Integrase core domain NRK98_10085 PF02347 Glycine cleavage system P-protein NRK98_10090 PF01597 Glycine cleavage H-protein NRK98_10095 PF01571 Aminomethyltransferase folate-binding domain NRK98_10095 PF08669 Glycine cleavage T-protein C-terminal barrel domain NRK98_10100 PF01494 FAD binding domain NRK98_10105 PF01494 FAD binding domain NRK98_10110 PF03695 Uncharacterised protein family (UPF0149) NRK98_10115 PF05164 Cell division protein ZapA NRK98_10125 PF07690 Major Facilitator Superfamily NRK98_10130 PF02798 Glutathione S-transferase, N-terminal domain NRK98_10130 PF00043 Glutathione S-transferase, C-terminal domain NRK98_10140 PF00459 Inositol monophosphatase family NRK98_10145 PF12729 Four helix bundle sensory module for signal transduction NRK98_10145 PF00672 HAMP domain NRK98_10145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_10150 PF02535 ZIP Zinc transporter NRK98_10160 PF01048 Phosphorylase superfamily NRK98_10170 PF01497 Periplasmic binding protein NRK98_10185 PF02561 Flagellar protein FliS NRK98_10190 PF07196 Flagellin hook IN motif NRK98_10190 PF07195 Flagellar hook-associated protein 2 C-terminus NRK98_10190 PF02465 Flagellar hook-associated protein 2 N-terminus NRK98_10200 PF07196 Flagellin hook IN motif NRK98_10200 PF00669 Bacterial flagellin N-terminal helical region NRK98_10200 PF00700 Bacterial flagellin C-terminal helical region NRK98_10205 PF00700 Bacterial flagellin C-terminal helical region NRK98_10205 PF00669 Bacterial flagellin N-terminal helical region NRK98_10205 PF07196 Flagellin hook IN motif NRK98_10210 PF03458 UPF0126 domain NRK98_10220 PF02568 Thiamine biosynthesis protein (ThiI) NRK98_10220 PF02926 THUMP domain NRK98_10230 PF06832 Penicillin-Binding Protein C-terminus Family NRK98_10230 PF00912 Transglycosylase NRK98_10230 PF00905 Penicillin binding protein transpeptidase domain NRK98_10235 PF07678 A-macroglobulin TED domain NRK98_10235 PF07703 Alpha-2-macroglobulin bait region domain NRK98_10235 PF01835 MG2 domain NRK98_10235 PF00207 Alpha-2-macroglobulin family NRK98_10235 PF17962 Bacterial macroglobulin domain 6 NRK98_10235 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NRK98_10235 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NRK98_10235 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NRK98_10235 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NRK98_10240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK98_10240 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_10245 PF00563 EAL domain NRK98_10245 PF03707 Bacterial signalling protein N terminal repeat NRK98_10245 PF00990 Diguanylate cyclase, GGDEF domain NRK98_10250 PF04055 Radical SAM superfamily NRK98_10265 PF01061 ABC-2 type transporter NRK98_10270 PF00005 ABC transporter NRK98_10280 PF02563 Polysaccharide biosynthesis/export protein NRK98_10280 PF10531 SLBB domain NRK98_10285 PF00483 Nucleotidyl transferase NRK98_10290 PF11380 Stealth protein CR2, conserved region 2 NRK98_10290 PF17101 Stealth protein CR1, conserved region 1 NRK98_10295 PF00535 Glycosyl transferase family 2 NRK98_10295 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 NRK98_10305 PF05159 Capsule polysaccharide biosynthesis protein NRK98_10310 PF05159 Capsule polysaccharide biosynthesis protein NRK98_10315 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_10320 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_10325 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_10330 PF00005 ABC transporter NRK98_10335 PF03956 Lysine exporter LysO NRK98_10340 PF01979 Amidohydrolase family NRK98_10345 PF04336 Acyl carrier protein phosphodiesterase NRK98_10365 PF03960 ArsC family NRK98_10370 PF00578 AhpC/TSA family NRK98_10375 PF13181 Tetratricopeptide repeat NRK98_10375 PF01435 Peptidase family M48 NRK98_10380 PF01206 Sulfurtransferase TusA NRK98_10385 PF01594 AI-2E family transporter NRK98_10395 PF00561 alpha/beta hydrolase fold NRK98_10400 PF03976 Polyphosphate kinase 2 (PPK2) NRK98_10405 PF00005 ABC transporter NRK98_10405 PF08402 TOBE domain NRK98_10410 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_10415 PF14785 Maltose transport system permease protein MalF P2 domain NRK98_10415 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_10420 PF01547 Bacterial extracellular solute-binding protein NRK98_10425 PF04245 37-kD nucleoid-associated bacterial protein NRK98_10430 PF07208 Protein of unknown function (DUF1414) NRK98_10435 PF00884 Sulfatase NRK98_10435 PF11893 Domain of unknown function (DUF3413) NRK98_10440 PF00593 TonB dependent receptor NRK98_10440 PF07715 TonB-dependent Receptor Plug Domain NRK98_10445 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRK98_10445 PF00326 Prolyl oligopeptidase family NRK98_10465 PF03974 Ecotin NRK98_10470 PF04219 Protein of unknown function, DUF NRK98_10475 PF03466 LysR substrate binding domain NRK98_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_10480 PF01817 Chorismate mutase type II NRK98_10480 PF02153 Prephenate dehydrogenase NRK98_10485 PF00793 DAHP synthetase I family NRK98_10490 PF03009 Glycerophosphoryl diester phosphodiesterase family NRK98_10495 PF01266 FAD dependent oxidoreductase NRK98_10495 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NRK98_10505 PF00455 DeoR C terminal sensor domain NRK98_10505 PF08220 DeoR-like helix-turn-helix domain NRK98_10510 PF07690 Major Facilitator Superfamily NRK98_10515 PF00230 Major intrinsic protein NRK98_10520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NRK98_10520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRK98_10525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_10525 PF00672 HAMP domain NRK98_10525 PF02743 Cache domain NRK98_10535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_10535 PF03466 LysR substrate binding domain NRK98_10570 PF00248 Aldo/keto reductase family NRK98_10575 PF07690 Major Facilitator Superfamily NRK98_10590 PF05114 Protein of unknown function (DUF692) NRK98_10610 PF02322 Cytochrome bd terminal oxidase subunit II NRK98_10615 PF01654 Cytochrome bd terminal oxidase subunit I NRK98_10620 PF00392 Bacterial regulatory proteins, gntR family NRK98_10620 PF00155 Aminotransferase class I and II NRK98_10630 PF04391 Protein of unknown function (DUF533) NRK98_10635 PF00892 EamA-like transporter family NRK98_10650 PF10689 Protein of unknown function (DUF2496) NRK98_10660 PF07690 Major Facilitator Superfamily NRK98_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_10665 PF03466 LysR substrate binding domain NRK98_10675 PF07690 Major Facilitator Superfamily NRK98_10680 PF09009 Exotoxin A catalytic NRK98_10680 PF09101 Exotoxin A binding NRK98_10680 PF09102 Exotoxin A, targeting NRK98_10685 PF01479 S4 domain NRK98_10685 PF00849 RNA pseudouridylate synthase NRK98_10700 PF01844 HNH endonuclease NRK98_10705 PF00300 Histidine phosphatase superfamily (branch 1) NRK98_10710 PF13309 HTH domain NRK98_10710 PF08348 YheO-like PAS domain NRK98_10715 PF03313 Serine dehydratase alpha chain NRK98_10720 PF01042 Endoribonuclease L-PSP NRK98_10730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_10730 PF00672 HAMP domain NRK98_10730 PF12729 Four helix bundle sensory module for signal transduction NRK98_10745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_10745 PF03466 LysR substrate binding domain NRK98_10750 PF00753 Metallo-beta-lactamase superfamily NRK98_10750 PF14863 Alkyl sulfatase dimerisation NRK98_10750 PF14864 Alkyl sulfatase C-terminal NRK98_10760 PF17944 Arginine decarboxylase C-terminal helical extension NRK98_10760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRK98_10760 PF17810 Arginine decarboxylase helical bundle domain NRK98_10770 PF07687 Peptidase dimerisation domain NRK98_10770 PF01546 Peptidase family M20/M25/M40 NRK98_10795 PF04264 YceI-like domain NRK98_10800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_10800 PF03466 LysR substrate binding domain NRK98_10810 PF01268 Formate--tetrahydrofolate ligase NRK98_10815 PF17200 Single Cache domain 2 NRK98_10815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_10815 PF00672 HAMP domain NRK98_10820 PF01227 GTP cyclohydrolase I NRK98_10825 PF00994 Probable molybdopterin binding domain NRK98_10825 PF03454 MoeA C-terminal region (domain IV) NRK98_10825 PF03453 MoeA N-terminal region (domain I and II) NRK98_10830 PF00899 ThiF family NRK98_10835 PF00561 alpha/beta hydrolase fold NRK98_10840 PF00005 ABC transporter NRK98_10840 PF03459 TOBE domain NRK98_10845 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_10855 PF02391 MoaE protein NRK98_10860 PF02597 ThiS family NRK98_10865 PF01967 MoaC family NRK98_10870 PF00994 Probable molybdopterin binding domain NRK98_10875 PF03264 NapC/NirT cytochrome c family, N-terminal region NRK98_10880 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NRK98_10885 PF12801 4Fe-4S binding domain NRK98_10885 PF12837 4Fe-4S binding domain NRK98_10890 PF12838 4Fe-4S dicluster domain NRK98_10890 PF12800 4Fe-4S binding domain NRK98_10895 PF00384 Molybdopterin oxidoreductase NRK98_10895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK98_10895 PF10518 TAT (twin-arginine translocation) pathway signal sequence NRK98_10895 PF01568 Molydopterin dinucleotide binding domain NRK98_10905 PF00037 4Fe-4S binding domain NRK98_10905 PF12800 4Fe-4S binding domain NRK98_10905 PF13187 4Fe-4S dicluster domain NRK98_10910 PF06463 Molybdenum Cofactor Synthesis C NRK98_10910 PF04055 Radical SAM superfamily NRK98_10915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_10915 PF07730 Histidine kinase NRK98_10915 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NRK98_10915 PF00672 HAMP domain NRK98_10920 PF00196 Bacterial regulatory proteins, luxR family NRK98_10920 PF00072 Response regulator receiver domain NRK98_10930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_10930 PF00512 His Kinase A (phospho-acceptor) domain NRK98_10930 PF09456 RcsC Alpha-Beta-Loop (ABL) NRK98_10930 PF00072 Response regulator receiver domain NRK98_10940 PF01933 Uncharacterised protein family UPF0052 NRK98_10950 PF13230 Glutamine amidotransferases class-II NRK98_10955 PF13580 SIS domain NRK98_10960 PF09317 Domain of unknown function (DUF1974) NRK98_10960 PF02770 Acyl-CoA dehydrogenase, middle domain NRK98_10960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK98_10960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK98_10965 PF11849 Domain of unknown function (DUF3369) NRK98_10975 PF00929 Exonuclease NRK98_10980 PF00075 RNase H NRK98_10985 PF08241 Methyltransferase domain NRK98_10990 PF00753 Metallo-beta-lactamase superfamily NRK98_10990 PF16123 Hydroxyacylglutathione hydrolase C-terminus NRK98_11000 PF01464 Transglycosylase SLT domain NRK98_11000 PF01476 LysM domain NRK98_11005 PF03372 Endonuclease/Exonuclease/phosphatase family NRK98_11015 PF03061 Thioesterase superfamily NRK98_11025 PF00356 Bacterial regulatory proteins, lacI family NRK98_11030 PF01464 Transglycosylase SLT domain NRK98_11030 PF14718 Soluble lytic murein transglycosylase L domain NRK98_11035 PF00563 EAL domain NRK98_11035 PF03707 Bacterial signalling protein N terminal repeat NRK98_11035 PF00990 Diguanylate cyclase, GGDEF domain NRK98_11040 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRK98_11060 PF04357 TamB, inner membrane protein subunit of TAM complex NRK98_11065 PF07244 Surface antigen variable number repeat NRK98_11065 PF01103 Surface antigen NRK98_11065 PF17243 POTRA domain TamA domain 1 NRK98_11080 PF01625 Peptide methionine sulfoxide reductase NRK98_11090 PF02627 Carboxymuconolactone decarboxylase family NRK98_11095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK98_11095 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_11095 PF00403 Heavy-metal-associated domain NRK98_11100 PF13416 Bacterial extracellular solute-binding protein NRK98_11110 PF00005 ABC transporter NRK98_11115 PF01066 CDP-alcohol phosphatidyltransferase NRK98_11120 PF13406 Transglycosylase SLT domain NRK98_11135 PF01047 MarR family NRK98_11145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRK98_11145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRK98_11145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRK98_11145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRK98_11150 PF03925 SeqA protein C-terminal domain NRK98_11150 PF17206 SeqA protein N-terminal domain NRK98_11155 PF12697 Alpha/beta hydrolase family NRK98_11165 PF01402 Ribbon-helix-helix protein, copG family NRK98_11170 PF00258 Flavodoxin NRK98_11180 PF01475 Ferric uptake regulator family NRK98_11185 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NRK98_11185 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRK98_11190 PF02838 Glycosyl hydrolase family 20, domain 2 NRK98_11190 PF03173 Putative carbohydrate binding domain NRK98_11190 PF00728 Glycosyl hydrolase family 20, catalytic domain NRK98_11190 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NRK98_11195 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRK98_11195 PF00367 phosphotransferase system, EIIB NRK98_11195 PF02378 Phosphotransferase system, EIIC NRK98_11200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NRK98_11205 PF01979 Amidohydrolase family NRK98_11210 PF00480 ROK family NRK98_11210 PF01047 MarR family NRK98_11215 PF08019 Phosphoethanolamine transferase EptA/EptB NRK98_11215 PF00884 Sulfatase NRK98_11220 PF01709 Transcriptional regulator NRK98_11225 PF02938 GAD domain NRK98_11225 PF00152 tRNA synthetases class II (D, K and N) NRK98_11225 PF01336 OB-fold nucleic acid binding domain NRK98_11230 PF01904 Protein of unknown function DUF72 NRK98_11235 PF13649 Methyltransferase domain NRK98_11240 PF08003 Protein of unknown function (DUF1698) NRK98_11260 PF00578 AhpC/TSA family NRK98_11260 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRK98_11265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_11265 PF03466 LysR substrate binding domain NRK98_11270 PF12563 Hemolytic toxin N terminal NRK98_11270 PF07968 Leukocidin/Hemolysin toxin family NRK98_11275 PF00877 NlpC/P60 family NRK98_11285 PF00171 Aldehyde dehydrogenase family NRK98_11290 PF00440 Bacterial regulatory proteins, tetR family NRK98_11290 PF08359 YsiA-like protein, C-terminal region NRK98_11300 PF00465 Iron-containing alcohol dehydrogenase NRK98_11310 PF00291 Pyridoxal-phosphate dependent enzyme NRK98_11330 PF01554 MatE NRK98_11340 PF04325 Protein of unknown function (DUF465) NRK98_11345 PF12833 Helix-turn-helix domain NRK98_11345 PF02311 AraC-like ligand binding domain NRK98_11350 PF01804 Penicillin amidase NRK98_11355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK98_11355 PF10371 Domain of unknown function NRK98_11355 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRK98_11355 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRK98_11355 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRK98_11360 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRK98_11360 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_11360 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRK98_11365 PF03473 MOSC domain NRK98_11365 PF03476 MOSC N-terminal beta barrel domain NRK98_11365 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK98_11365 PF03473 MOSC domain NRK98_11365 PF03476 MOSC N-terminal beta barrel domain NRK98_11365 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK98_11370 PF08447 PAS fold NRK98_11370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_11370 PF13426 PAS domain NRK98_11375 PF01435 Peptidase family M48 NRK98_11385 PF08241 Methyltransferase domain NRK98_11385 PF12697 Alpha/beta hydrolase family NRK98_11390 PF00155 Aminotransferase class I and II NRK98_11395 PF06968 Biotin and Thiamin Synthesis associated domain NRK98_11395 PF04055 Radical SAM superfamily NRK98_11400 PF00202 Aminotransferase class-III NRK98_11415 PF01336 OB-fold nucleic acid binding domain NRK98_11415 PF00152 tRNA synthetases class II (D, K and N) NRK98_11420 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRK98_11430 PF07687 Peptidase dimerisation domain NRK98_11430 PF01546 Peptidase family M20/M25/M40 NRK98_11435 PF03606 C4-dicarboxylate anaerobic carrier NRK98_11445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_11445 PF03466 LysR substrate binding domain NRK98_11450 PF03960 ArsC family NRK98_11455 PF07687 Peptidase dimerisation domain NRK98_11455 PF01546 Peptidase family M20/M25/M40 NRK98_11460 PF02557 D-alanyl-D-alanine carboxypeptidase NRK98_11470 PF03471 Transporter associated domain NRK98_11470 PF00999 Sodium/hydrogen exchanger family NRK98_11470 PF02080 TrkA-C domain NRK98_11480 PF00999 Sodium/hydrogen exchanger family NRK98_11480 PF02080 TrkA-C domain NRK98_11480 PF03471 Transporter associated domain NRK98_11490 PF01810 LysE type translocator NRK98_11495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_11495 PF00672 HAMP domain NRK98_11495 PF12729 Four helix bundle sensory module for signal transduction NRK98_11500 PF07509 Protein of unknown function (DUF1523) NRK98_11515 PF01156 Inosine-uridine preferring nucleoside hydrolase NRK98_11520 PF00849 RNA pseudouridylate synthase NRK98_11525 PF01048 Phosphorylase superfamily NRK98_11530 PF00465 Iron-containing alcohol dehydrogenase NRK98_11535 PF04355 SmpA / OmlA family NRK98_11540 PF13460 NAD(P)H-binding NRK98_11545 PF03658 RnfH family Ubiquitin NRK98_11550 PF03364 Polyketide cyclase / dehydrase and lipid transport NRK98_11555 PF01668 SmpB protein NRK98_11575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_11575 PF03466 LysR substrate binding domain NRK98_11580 PF00291 Pyridoxal-phosphate dependent enzyme NRK98_11590 PF01740 STAS domain NRK98_11590 PF00916 Sulfate permease family NRK98_11595 PF00180 Isocitrate/isopropylmalate dehydrogenase NRK98_11600 PF12833 Helix-turn-helix domain NRK98_11605 PF01238 Phosphomannose isomerase type I NRK98_11635 PF00155 Aminotransferase class I and II NRK98_11640 PF02378 Phosphotransferase system, EIIC NRK98_11640 PF00367 phosphotransferase system, EIIB NRK98_11645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK98_11645 PF00356 Bacterial regulatory proteins, lacI family NRK98_11655 PF00583 Acetyltransferase (GNAT) family NRK98_11660 PF04245 37-kD nucleoid-associated bacterial protein NRK98_11670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK98_11670 PF02378 Phosphotransferase system, EIIC NRK98_11670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRK98_11675 PF07690 Major Facilitator Superfamily NRK98_11680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK98_11680 PF02378 Phosphotransferase system, EIIC NRK98_11680 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRK98_11690 PF00849 RNA pseudouridylate synthase NRK98_11695 PF00293 NUDIX domain NRK98_11705 PF04356 Protein of unknown function (DUF489) NRK98_11710 PF08328 Adenylosuccinate lyase C-terminal NRK98_11710 PF00206 Lyase NRK98_11715 PF08007 Cupin superfamily protein NRK98_11725 PF13508 Acetyltransferase (GNAT) domain NRK98_11735 PF02798 Glutathione S-transferase, N-terminal domain NRK98_11740 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NRK98_11740 PF01243 Pyridoxamine 5'-phosphate oxidase NRK98_11755 PF01189 16S rRNA methyltransferase RsmB/F NRK98_11755 PF01029 NusB family NRK98_11760 PF00462 Glutaredoxin NRK98_11765 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRK98_11765 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRK98_11770 PF04333 MlaA lipoprotein NRK98_11780 PF03918 Cytochrome C biogenesis protein NRK98_11785 PF08534 Redoxin NRK98_11790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRK98_11790 PF01578 Cytochrome C assembly protein NRK98_11795 PF03100 CcmE NRK98_11800 PF04995 Heme exporter protein D (CcmD) NRK98_11805 PF01578 Cytochrome C assembly protein NRK98_11810 PF03379 CcmB protein NRK98_11815 PF00005 ABC transporter NRK98_11825 PF01584 CheW-like domain NRK98_11835 PF13614 AAA domain NRK98_11840 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRK98_11840 PF00691 OmpA family NRK98_11845 PF01618 MotA/TolQ/ExbB proton channel family NRK98_11850 PF01339 CheB methylesterase NRK98_11850 PF00072 Response regulator receiver domain NRK98_11855 PF01627 Hpt domain NRK98_11855 PF00072 Response regulator receiver domain NRK98_11855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_11855 PF02895 Signal transducing histidine kinase, homodimeric domain NRK98_11855 PF01584 CheW-like domain NRK98_11860 PF04344 Chemotaxis phosphatase, CheZ NRK98_11865 PF00072 Response regulator receiver domain NRK98_11870 PF04542 Sigma-70 region 2 NRK98_11870 PF04539 Sigma-70 region 3 NRK98_11870 PF04545 Sigma-70, region 4 NRK98_11875 PF10609 NUBPL iron-transfer P-loop NTPase NRK98_11880 PF00448 SRP54-type protein, GTPase domain NRK98_11885 PF00771 FHIPEP family NRK98_11890 PF01312 FlhB HrpN YscU SpaS Family NRK98_11895 PF01311 Bacterial export proteins, family 1 NRK98_11900 PF01313 Bacterial export proteins, family 3 NRK98_11905 PF00813 FliP family NRK98_11910 PF04347 Flagellar biosynthesis protein, FliO NRK98_11915 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRK98_11920 PF02154 Flagellar motor switch protein FliM NRK98_11920 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRK98_11940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK98_11940 PF18269 T3SS EscN ATPase C-terminal domain NRK98_11950 PF14842 FliG N-terminal domain NRK98_11950 PF14841 FliG middle domain NRK98_11950 PF01706 FliG C-terminal domain NRK98_11955 PF01514 Secretory protein of YscJ/FliF family NRK98_11955 PF08345 Flagellar M-ring protein C-terminal NRK98_11960 PF02049 Flagellar hook-basal body complex protein FliE NRK98_11975 PF03960 ArsC family NRK98_11980 PF01758 Sodium Bile acid symporter family NRK98_11985 PF02374 Anion-transporting ATPase NRK98_11990 PF06953 Arsenical resistance operon trans-acting repressor ArsD NRK98_11995 PF01022 Bacterial regulatory protein, arsR family NRK98_12000 PF02001 Protein of unknown function DUF134 NRK98_12010 PF00072 Response regulator receiver domain NRK98_12015 PF18693 TRAM domain NRK98_12015 PF00919 Uncharacterized protein family UPF0004 NRK98_12015 PF04055 Radical SAM superfamily NRK98_12020 PF16671 Actin cross-linking domain NRK98_12020 PF12146 Serine aminopeptidase, S33 NRK98_12020 PF11647 Membrane Localization Domain NRK98_12020 PF11713 Peptidase C80 family NRK98_12020 PF07634 RtxA repeat NRK98_12025 PF02794 RTX toxin acyltransferase family NRK98_12035 PF03412 Peptidase C39 family NRK98_12035 PF00005 ABC transporter NRK98_12035 PF00664 ABC transporter transmembrane region NRK98_12045 PF00664 ABC transporter transmembrane region NRK98_12045 PF00005 ABC transporter NRK98_12045 PF03412 Peptidase C39 family NRK98_12050 PF00486 Transcriptional regulatory protein, C terminal NRK98_12050 PF00072 Response regulator receiver domain NRK98_12055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_12060 PF02685 Glucokinase NRK98_12065 PF01418 Helix-turn-helix domain, rpiR family NRK98_12065 PF01380 SIS domain NRK98_12070 PF02887 Pyruvate kinase, alpha/beta domain NRK98_12070 PF00224 Pyruvate kinase, barrel domain NRK98_12080 PF00873 AcrB/AcrD/AcrF family NRK98_12085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK98_12085 PF02770 Acyl-CoA dehydrogenase, middle domain NRK98_12085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK98_12085 PF09317 Domain of unknown function (DUF1974) NRK98_12090 PF00440 Bacterial regulatory proteins, tetR family NRK98_12105 PF00384 Molybdopterin oxidoreductase NRK98_12110 PF02634 FdhD/NarQ family NRK98_12115 PF03466 LysR substrate binding domain NRK98_12115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_12135 PF00936 BMC domain NRK98_12140 PF00936 BMC domain NRK98_12145 PF00936 BMC domain NRK98_12150 PF00465 Iron-containing alcohol dehydrogenase NRK98_12150 PF00171 Aldehyde dehydrogenase family NRK98_12160 PF00465 Iron-containing alcohol dehydrogenase NRK98_12160 PF00171 Aldehyde dehydrogenase family NRK98_12165 PF02901 Pyruvate formate lyase-like NRK98_12165 PF01228 Glycine radical NRK98_12170 PF13187 4Fe-4S dicluster domain NRK98_12170 PF04055 Radical SAM superfamily NRK98_12175 PF00936 BMC domain NRK98_12180 PF06130 Phosphate propanoyltransferase NRK98_12190 PF00893 Small Multidrug Resistance protein NRK98_12195 PF00893 Small Multidrug Resistance protein NRK98_12200 PF00512 His Kinase A (phospho-acceptor) domain NRK98_12200 PF13426 PAS domain NRK98_12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_12200 PF00672 HAMP domain NRK98_12205 PF00072 Response regulator receiver domain NRK98_12205 PF00486 Transcriptional regulatory protein, C terminal NRK98_12210 PF00529 HlyD membrane-fusion protein of T1SS NRK98_12210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_12215 PF00873 AcrB/AcrD/AcrF family NRK98_12220 PF07690 Major Facilitator Superfamily NRK98_12235 PF03734 L,D-transpeptidase catalytic domain NRK98_12235 PF01476 LysM domain NRK98_12235 PF17969 L,D-transpeptidase C-terminal domain NRK98_12245 PF01575 MaoC like domain NRK98_12250 PF05971 RNA methyltransferase NRK98_12255 PF00877 NlpC/P60 family NRK98_12260 PF01648 4'-phosphopantetheinyl transferase superfamily NRK98_12265 PF00085 Thioredoxin NRK98_12275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRK98_12280 PF01842 ACT domain NRK98_12280 PF00551 Formyl transferase NRK98_12290 PF13091 PLD-like domain NRK98_12290 PF13396 Phospholipase_D-nuclease N-terminal NRK98_12305 PF01551 Peptidase family M23 NRK98_12310 PF00128 Alpha amylase, catalytic domain NRK98_12315 PF01551 Peptidase family M23 NRK98_12315 PF01464 Transglycosylase SLT domain NRK98_12315 PF10145 Phage-related minor tail protein NRK98_12320 PF00230 Major intrinsic protein NRK98_12325 PF02075 Crossover junction endodeoxyribonuclease RuvC NRK98_12330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRK98_12360 PF12833 Helix-turn-helix domain NRK98_12375 PF11842 Domain of unknown function (DUF3362) NRK98_12375 PF04055 Radical SAM superfamily NRK98_12375 PF08497 Radical SAM N-terminal NRK98_12385 PF00873 AcrB/AcrD/AcrF family NRK98_12390 PF00529 HlyD membrane-fusion protein of T1SS NRK98_12390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_12395 PF00990 Diguanylate cyclase, GGDEF domain NRK98_12400 PF01734 Patatin-like phospholipase NRK98_12405 PF00209 Sodium:neurotransmitter symporter family NRK98_12420 PF01389 OmpA-like transmembrane domain NRK98_12420 PF00691 OmpA family NRK98_12425 PF00691 OmpA family NRK98_12425 PF01389 OmpA-like transmembrane domain NRK98_12430 PF00691 OmpA family NRK98_12430 PF01389 OmpA-like transmembrane domain NRK98_12435 PF00390 Malic enzyme, N-terminal domain NRK98_12435 PF03949 Malic enzyme, NAD binding domain NRK98_12440 PF06719 AraC-type transcriptional regulator N-terminus NRK98_12440 PF12833 Helix-turn-helix domain NRK98_12445 PF01554 MatE NRK98_12450 PF10692 Protein of unknown function (DUF2498) NRK98_12455 PF00990 Diguanylate cyclase, GGDEF domain NRK98_12455 PF00072 Response regulator receiver domain NRK98_12460 PF00860 Permease family NRK98_12470 PF01235 Sodium:alanine symporter family NRK98_12475 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRK98_12475 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRK98_12480 PF01699 Sodium/calcium exchanger protein NRK98_12485 PF08534 Redoxin NRK98_12485 PF00462 Glutaredoxin NRK98_12505 PF00005 ABC transporter NRK98_12510 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_12515 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_12520 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_12535 PF00005 ABC transporter NRK98_12540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK98_12540 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRK98_12550 PF03932 CutC family NRK98_12555 PF00480 ROK family NRK98_12565 PF01435 Peptidase family M48 NRK98_12570 PF12849 PBP superfamily domain NRK98_12575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_12575 PF00512 His Kinase A (phospho-acceptor) domain NRK98_12575 PF00989 PAS fold NRK98_12575 PF11808 Phosphate regulon sensor protein PhoR NRK98_12580 PF00072 Response regulator receiver domain NRK98_12580 PF00486 Transcriptional regulatory protein, C terminal NRK98_12585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK98_12590 PF02515 CoA-transferase family III NRK98_12595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK98_12595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK98_12595 PF02770 Acyl-CoA dehydrogenase, middle domain NRK98_12600 PF00158 Sigma-54 interaction domain NRK98_12600 PF02954 Bacterial regulatory protein, Fis family NRK98_12600 PF01590 GAF domain NRK98_12605 PF00171 Aldehyde dehydrogenase family NRK98_12615 PF00892 EamA-like transporter family NRK98_12620 PF12431 Transcriptional regulator NRK98_12620 PF00072 Response regulator receiver domain NRK98_12625 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRK98_12625 PF17203 Single cache domain 3 NRK98_12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_12625 PF00989 PAS fold NRK98_12630 PF00390 Malic enzyme, N-terminal domain NRK98_12630 PF03949 Malic enzyme, NAD binding domain NRK98_12635 PF03390 2-hydroxycarboxylate transporter family NRK98_12645 PF01047 MarR family NRK98_12650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_12650 PF00529 HlyD membrane-fusion protein of T1SS NRK98_12675 PF01679 Proteolipid membrane potential modulator NRK98_12685 PF03477 ATP cone domain NRK98_12685 PF13597 Anaerobic ribonucleoside-triphosphate reductase NRK98_12700 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NRK98_12700 PF00533 BRCA1 C Terminus (BRCT) domain NRK98_12700 PF01653 NAD-dependent DNA ligase adenylation domain NRK98_12700 PF03120 NAD-dependent DNA ligase OB-fold domain NRK98_12700 PF12826 Helix-hairpin-helix motif NRK98_12705 PF04354 ZipA, C-terminal FtsZ-binding domain NRK98_12710 PF06470 SMC proteins Flexible Hinge Domain NRK98_12710 PF02463 RecF/RecN/SMC N terminal domain NRK98_12720 PF03458 UPF0126 domain NRK98_12730 PF05951 Bacterial protein of unknown function (DUF882) NRK98_12735 PF03734 L,D-transpeptidase catalytic domain NRK98_12735 PF01471 Putative peptidoglycan binding domain NRK98_12750 PF00535 Glycosyl transferase family 2 NRK98_12765 PF00128 Alpha amylase, catalytic domain NRK98_12775 PF00196 Bacterial regulatory proteins, luxR family NRK98_12775 PF00072 Response regulator receiver domain NRK98_12795 PF02080 TrkA-C domain NRK98_12795 PF02254 TrkA-N domain NRK98_12795 PF00999 Sodium/hydrogen exchanger family NRK98_12800 PF00990 Diguanylate cyclase, GGDEF domain NRK98_12805 PF01171 PP-loop family NRK98_12805 PF11734 TilS substrate C-terminal domain NRK98_12805 PF09179 TilS substrate binding domain NRK98_12810 PF01431 Peptidase family M13 NRK98_12810 PF05649 Peptidase family M13 NRK98_12820 PF12848 ABC transporter NRK98_12820 PF16326 ABC transporter C-terminal domain NRK98_12820 PF00005 ABC transporter NRK98_12825 PF13302 Acetyltransferase (GNAT) domain NRK98_12830 PF13520 Amino acid permease NRK98_12840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_12840 PF03466 LysR substrate binding domain NRK98_12850 PF08543 Phosphomethylpyrimidine kinase NRK98_12855 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NRK98_12855 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NRK98_12855 PF01276 Orn/Lys/Arg decarboxylase, major domain NRK98_12860 PF13520 Amino acid permease NRK98_12865 PF00486 Transcriptional regulatory protein, C terminal NRK98_12865 PF18500 CadC C-terminal domain 1 NRK98_12870 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NRK98_12875 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NRK98_12875 PF07733 Bacterial DNA polymerase III alpha NTPase domain NRK98_12875 PF02811 PHP domain NRK98_12875 PF01336 OB-fold nucleic acid binding domain NRK98_12875 PF14579 Helix-hairpin-helix motif NRK98_12880 PF01351 Ribonuclease HII NRK98_12885 PF02684 Lipid-A-disaccharide synthetase NRK98_12890 PF00132 Bacterial transferase hexapeptide (six repeats) NRK98_12890 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NRK98_12895 PF07977 FabA-like domain NRK98_12900 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NRK98_12900 PF00132 Bacterial transferase hexapeptide (six repeats) NRK98_12905 PF03938 Outer membrane protein (OmpH-like) NRK98_12910 PF07244 Surface antigen variable number repeat NRK98_12910 PF01103 Surface antigen NRK98_12915 PF17820 PDZ domain NRK98_12915 PF02163 Peptidase family M50 NRK98_12920 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NRK98_12920 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NRK98_12920 PF13288 DXP reductoisomerase C-terminal domain NRK98_12930 PF01255 Putative undecaprenyl diphosphate synthase NRK98_12935 PF01765 Ribosome recycling factor NRK98_12940 PF00696 Amino acid kinase family NRK98_12945 PF00889 Elongation factor TS NRK98_12950 PF00318 Ribosomal protein S2 NRK98_12955 PF00557 Metallopeptidase family M24 NRK98_12960 PF01842 ACT domain NRK98_12960 PF08335 GlnD PII-uridylyltransferase NRK98_12960 PF01966 HD domain NRK98_12960 PF01909 Nucleotidyltransferase domain NRK98_12965 PF14602 Hexapeptide repeat of succinyl-transferase NRK98_12965 PF00132 Bacterial transferase hexapeptide (six repeats) NRK98_12965 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NRK98_12970 PF11944 Protein of unknown function (DUF3461) NRK98_12975 PF02378 Phosphotransferase system, EIIC NRK98_12975 PF00367 phosphotransferase system, EIIB NRK98_12980 PF07148 Maltose operon periplasmic protein precursor (MalM) NRK98_12985 PF02264 LamB porin NRK98_12990 PF00258 Flavodoxin NRK98_12995 PF00849 RNA pseudouridylate synthase NRK98_13000 PF04287 tRNA pseudouridine synthase C NRK98_13025 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NRK98_13030 PF07348 Syd protein (SUKH-2) NRK98_13035 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NRK98_13035 PF14489 QueF-like protein NRK98_13045 PF00990 Diguanylate cyclase, GGDEF domain NRK98_13050 PF11892 Domain of unknown function (DUF3412) NRK98_13050 PF03641 Possible lysine decarboxylase NRK98_13050 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NRK98_13055 PF01367 5'-3' exonuclease, C-terminal SAM fold NRK98_13055 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRK98_13060 PF00180 Isocitrate/isopropylmalate dehydrogenase NRK98_13060 PF18324 Hypothetical protein TT1725 NRK98_13070 PF18125 RlmM ferredoxin-like domain NRK98_13070 PF01728 FtsJ-like methyltransferase NRK98_13075 PF04241 Protein of unknown function (DUF423) NRK98_13085 PF03466 LysR substrate binding domain NRK98_13085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_13090 PF00672 HAMP domain NRK98_13090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_13095 PF11799 impB/mucB/samB family C-terminal domain NRK98_13095 PF11798 IMS family HHH motif NRK98_13095 PF00817 impB/mucB/samB family NRK98_13110 PF02424 ApbE family NRK98_13115 PF00970 Oxidoreductase FAD-binding domain NRK98_13115 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK98_13115 PF00175 Oxidoreductase NAD-binding domain NRK98_13120 PF02508 Rnf-Nqr subunit, membrane protein NRK98_13125 PF02508 Rnf-Nqr subunit, membrane protein NRK98_13130 PF04205 FMN-binding domain NRK98_13135 PF03116 NQR2, RnfD, RnfE family NRK98_13140 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NRK98_13140 PF11973 NQRA C-terminal domain NRK98_13145 PF01722 BolA-like protein NRK98_13150 PF05175 Methyltransferase small domain NRK98_13160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRK98_13170 PF07690 Major Facilitator Superfamily NRK98_13175 PF03502 Nucleoside-specific channel-forming protein, Tsx NRK98_13180 PF04461 Protein of unknown function (DUF520) NRK98_13185 PF02558 Ketopantoate reductase PanE/ApbA NRK98_13185 PF08546 Ketopantoate reductase PanE/ApbA C terminal NRK98_13190 PF01965 DJ-1/PfpI family NRK98_13195 PF00205 Thiamine pyrophosphate enzyme, central domain NRK98_13195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRK98_13195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK98_13200 PF03306 Alpha-acetolactate decarboxylase NRK98_13205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_13205 PF03466 LysR substrate binding domain NRK98_13255 PF03496 ADP-ribosyltransferase exoenzyme NRK98_13255 PF03534 Salmonella virulence plasmid 65kDa B protein NRK98_13270 PF05638 Type VI secretion system effector, Hcp NRK98_13275 PF03472 Autoinducer binding domain NRK98_13275 PF00196 Bacterial regulatory proteins, luxR family NRK98_13290 PF06965 Na+/H+ antiporter 1 NRK98_13290 PF13462 Thioredoxin NRK98_13295 PF16363 GDP-mannose 4,6 dehydratase NRK98_13300 PF00970 Oxidoreductase FAD-binding domain NRK98_13300 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK98_13300 PF00175 Oxidoreductase NAD-binding domain NRK98_13305 PF03063 Prismane/CO dehydrogenase family NRK98_13310 PF00210 Ferritin-like domain NRK98_13350 PF00106 short chain dehydrogenase NRK98_13360 PF00875 DNA photolyase NRK98_13360 PF03441 FAD binding domain of DNA photolyase NRK98_13365 PF13411 MerR HTH family regulatory protein NRK98_13370 PF08349 Protein of unknown function (DUF1722) NRK98_13400 PF01817 Chorismate mutase type II NRK98_13400 PF00800 Prephenate dehydratase NRK98_13425 PF00455 DeoR C terminal sensor domain NRK98_13425 PF08220 DeoR-like helix-turn-helix domain NRK98_13430 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRK98_13430 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRK98_13435 PF07005 Sugar-binding N-terminal domain NRK98_13435 PF17042 Nucleotide-binding C-terminal domain NRK98_13440 PF00596 Class II Aldolase and Adducin N-terminal domain NRK98_13445 PF01261 Xylose isomerase-like TIM barrel NRK98_13450 PF01370 NAD dependent epimerase/dehydratase family NRK98_13455 PF02447 GntP family permease NRK98_13465 PF02743 Cache domain NRK98_13465 PF00672 HAMP domain NRK98_13465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_13470 PF03573 outer membrane porin, OprD family NRK98_13475 PF00106 short chain dehydrogenase NRK98_13500 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NRK98_13510 PF12833 Helix-turn-helix domain NRK98_13510 PF00730 HhH-GPD superfamily base excision DNA repair protein NRK98_13510 PF06029 AlkA N-terminal domain NRK98_13510 PF02805 Metal binding domain of Ada NRK98_13515 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRK98_13515 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRK98_13530 PF12392 Collagenase NRK98_13530 PF01136 Peptidase family U32 NRK98_13535 PF01810 LysE type translocator NRK98_13540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_13540 PF03466 LysR substrate binding domain NRK98_13545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRK98_13545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRK98_13550 PF00672 HAMP domain NRK98_13550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_13555 PF00072 Response regulator receiver domain NRK98_13565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_13565 PF02895 Signal transducing histidine kinase, homodimeric domain NRK98_13565 PF09078 CheY binding NRK98_13565 PF01584 CheW-like domain NRK98_13565 PF01627 Hpt domain NRK98_13570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_13570 PF00672 HAMP domain NRK98_13570 PF12729 Four helix bundle sensory module for signal transduction NRK98_13575 PF01584 CheW-like domain NRK98_13580 PF00672 HAMP domain NRK98_13580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_13585 PF01739 CheR methyltransferase, SAM binding domain NRK98_13585 PF03705 CheR methyltransferase, all-alpha domain NRK98_13590 PF03975 CheD chemotactic sensory transduction NRK98_13595 PF01339 CheB methylesterase NRK98_13595 PF00072 Response regulator receiver domain NRK98_13600 PF00266 Aminotransferase class-V NRK98_13625 PF00989 PAS fold NRK98_13625 PF01590 GAF domain NRK98_13625 PF00990 Diguanylate cyclase, GGDEF domain NRK98_13625 PF00563 EAL domain NRK98_13630 PF01136 Peptidase family U32 NRK98_13630 PF16325 Peptidase family U32 C-terminal domain NRK98_13635 PF12838 4Fe-4S dicluster domain NRK98_13640 PF00842 Alanine racemase, C-terminal domain NRK98_13640 PF01168 Alanine racemase, N-terminal domain NRK98_13645 PF00772 DnaB-like helicase N terminal domain NRK98_13645 PF03796 DnaB-like helicase C terminal domain NRK98_13655 PF12792 CSS motif domain associated with EAL NRK98_13655 PF00563 EAL domain NRK98_13660 PF02872 5'-nucleotidase, C-terminal domain NRK98_13660 PF00149 Calcineurin-like phosphoesterase NRK98_13680 PF00158 Sigma-54 interaction domain NRK98_13680 PF00072 Response regulator receiver domain NRK98_13680 PF02954 Bacterial regulatory protein, Fis family NRK98_13685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRK98_13685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK98_13695 PF04102 SlyX NRK98_13700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK98_13715 PF01584 CheW-like domain NRK98_13715 PF00072 Response regulator receiver domain NRK98_13720 PF00561 alpha/beta hydrolase fold NRK98_13725 PF06794 Uncharacterised protein family (UPF0270) NRK98_13730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRK98_13730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRK98_13730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRK98_13735 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRK98_13740 PF00535 Glycosyl transferase family 2 NRK98_13745 PF01370 NAD dependent epimerase/dehydratase family NRK98_13745 PF02911 Formyl transferase, C-terminal domain NRK98_13745 PF00551 Formyl transferase NRK98_13750 PF01522 Polysaccharide deacetylase NRK98_13755 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NRK98_13760 PF00892 EamA-like transporter family NRK98_13765 PF00893 Small Multidrug Resistance protein NRK98_13770 PF00485 Phosphoribulokinase / Uridine kinase family NRK98_13785 PF02566 OsmC-like protein NRK98_13790 PF00027 Cyclic nucleotide-binding domain NRK98_13790 PF13545 Crp-like helix-turn-helix domain NRK98_13795 PF08241 Methyltransferase domain NRK98_13800 PF18416 N-acetylglucosamine binding protein domain 2 NRK98_13800 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRK98_13805 PF12561 ToxR activated gene A lipoprotein domain NRK98_13805 PF17945 Beta/Gamma crystallin NRK98_13810 PF00704 Glycosyl hydrolases family 18 NRK98_13810 PF08329 Chitinase A, N-terminal domain NRK98_13815 PF00989 PAS fold NRK98_13815 PF00512 His Kinase A (phospho-acceptor) domain NRK98_13815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_13825 PF13443 Cro/C1-type HTH DNA-binding domain NRK98_13835 PF12832 MFS_1 like family NRK98_13840 PF07715 TonB-dependent Receptor Plug Domain NRK98_13840 PF00593 TonB dependent receptor NRK98_13860 PF01243 Pyridoxamine 5'-phosphate oxidase NRK98_13865 PF06228 Haem utilisation ChuX/HutX NRK98_13875 PF01032 FecCD transport family NRK98_13880 PF00005 ABC transporter NRK98_13895 PF01370 NAD dependent epimerase/dehydratase family NRK98_13910 PF01048 Phosphorylase superfamily NRK98_13925 PF00005 ABC transporter NRK98_13925 PF12848 ABC transporter NRK98_13935 PF00860 Permease family NRK98_13940 PF00226 DnaJ domain NRK98_13940 PF05099 Tellurite resistance protein TerB NRK98_13945 PF00483 Nucleotidyl transferase NRK98_13950 PF01636 Phosphotransferase enzyme family NRK98_13955 PF03968 OstA-like protein NRK98_13955 PF04453 LPS transport system D NRK98_13960 PF00639 PPIC-type PPIASE domain NRK98_13960 PF09312 SurA N-terminal domain NRK98_13965 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NRK98_13970 PF00398 Ribosomal RNA adenine dimethylase NRK98_13975 PF04379 ApaG domain NRK98_13980 PF00149 Calcineurin-like phosphoesterase NRK98_13990 PF00296 Luciferase-like monooxygenase NRK98_14010 PF00501 AMP-binding enzyme NRK98_14010 PF13193 AMP-binding enzyme C-terminal domain NRK98_14015 PF07670 Nucleoside recognition NRK98_14020 PF01018 GTP1/OBG NRK98_14020 PF01926 50S ribosome-binding GTPase NRK98_14025 PF01016 Ribosomal L27 protein NRK98_14030 PF00829 Ribosomal prokaryotic L21 protein NRK98_14035 PF00348 Polyprenyl synthetase NRK98_14040 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NRK98_14045 PF01145 SPFH domain / Band 7 family NRK98_14050 PF01145 SPFH domain / Band 7 family NRK98_14050 PF12221 Bacterial membrane protein N terminal NRK98_14055 PF16360 GTP-binding GTPase Middle Region NRK98_14055 PF13167 GTP-binding GTPase N-terminal NRK98_14055 PF01926 50S ribosome-binding GTPase NRK98_14060 PF17209 Hfq protein NRK98_14070 PF01119 DNA mismatch repair protein, C-terminal domain NRK98_14070 PF08676 MutL C terminal dimerisation domain NRK98_14075 PF01520 N-acetylmuramoyl-L-alanine amidase NRK98_14080 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NRK98_14085 PF03853 YjeF-related protein N-terminus NRK98_14085 PF01256 Carbohydrate kinase NRK98_14090 PF08331 Domain of unknown function (DUF1730) NRK98_14095 PF00480 ROK family NRK98_14105 PF00005 ABC transporter NRK98_14105 PF09383 NIL domain NRK98_14110 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_14115 PF03180 NLPA lipoprotein NRK98_14120 PF02357 Transcription termination factor nusG NRK98_14125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_14125 PF00672 HAMP domain NRK98_14125 PF12729 Four helix bundle sensory module for signal transduction NRK98_14130 PF03707 Bacterial signalling protein N terminal repeat NRK98_14130 PF00990 Diguanylate cyclase, GGDEF domain NRK98_14130 PF00563 EAL domain NRK98_14135 PF09456 RcsC Alpha-Beta-Loop (ABL) NRK98_14135 PF00512 His Kinase A (phospho-acceptor) domain NRK98_14135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_14135 PF00072 Response regulator receiver domain NRK98_14145 PF13286 Phosphohydrolase-associated domain NRK98_14145 PF01966 HD domain NRK98_14150 PF00989 PAS fold NRK98_14150 PF00072 Response regulator receiver domain NRK98_14150 PF18415 Histidine kinase receptor ArcB trans-membrane domain NRK98_14150 PF00512 His Kinase A (phospho-acceptor) domain NRK98_14150 PF01627 Hpt domain NRK98_14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_14170 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NRK98_14175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_14175 PF03466 LysR substrate binding domain NRK98_14185 PF01259 SAICAR synthetase NRK98_14190 PF06804 NlpB/DapX lipoprotein NRK98_14195 PF00701 Dihydrodipicolinate synthetase family NRK98_14200 PF01842 ACT domain NRK98_14205 PF00578 AhpC/TSA family NRK98_14210 PF03887 YfbU domain NRK98_14215 PF04217 Protein of unknown function, DUF412 NRK98_14220 PF00871 Acetokinase family NRK98_14225 PF01515 Phosphate acetyl/butaryl transferase NRK98_14225 PF07085 DRTGG domain NRK98_14230 PF10369 Small subunit of acetolactate synthase NRK98_14235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRK98_14235 PF00205 Thiamine pyrophosphate enzyme, central domain NRK98_14235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK98_14250 PF01569 PAP2 superfamily NRK98_14260 PF08502 LeuA allosteric (dimerisation) domain NRK98_14260 PF00682 HMGL-like NRK98_14265 PF00180 Isocitrate/isopropylmalate dehydrogenase NRK98_14270 PF00330 Aconitase family (aconitate hydratase) NRK98_14275 PF00694 Aconitase C-terminal domain NRK98_14295 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_14300 PF00005 ABC transporter NRK98_14305 PF02562 PhoH-like protein NRK98_14305 PF13638 PIN domain NRK98_14315 PF03477 ATP cone domain NRK98_14315 PF02867 Ribonucleotide reductase, barrel domain NRK98_14315 PF00317 Ribonucleotide reductase, all-alpha domain NRK98_14355 PF18337 RapA N-terminal Tudor like domain NRK98_14355 PF00271 Helicase conserved C-terminal domain NRK98_14355 PF12137 RNA polymerase recycling family C-terminal NRK98_14355 PF00176 SNF2 family N-terminal domain NRK98_14355 PF18339 RapA N-terminal Tudor like domain 1 NRK98_14360 PF00849 RNA pseudouridylate synthase NRK98_14370 PF00563 EAL domain NRK98_14370 PF00990 Diguanylate cyclase, GGDEF domain NRK98_14370 PF03707 Bacterial signalling protein N terminal repeat NRK98_14370 PF13188 PAS domain NRK98_14380 PF00118 TCP-1/cpn60 chaperonin family NRK98_14385 PF00166 Chaperonin 10 Kd subunit NRK98_14390 PF01554 MatE NRK98_14395 PF04186 FxsA cytoplasmic membrane protein NRK98_14400 PF10415 Fumarase C C-terminus NRK98_14400 PF00206 Lyase NRK98_14405 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRK98_14410 PF00267 Gram-negative porin NRK98_14415 PF07690 Major Facilitator Superfamily NRK98_14420 PF03466 LysR substrate binding domain NRK98_14420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_14425 PF07504 Fungalysin/Thermolysin Propeptide Motif NRK98_14425 PF03413 Peptidase propeptide and YPEB domain NRK98_14425 PF01447 Thermolysin metallopeptidase, catalytic domain NRK98_14425 PF02868 Thermolysin metallopeptidase, alpha-helical domain NRK98_14425 PF04151 Bacterial pre-peptidase C-terminal domain NRK98_14430 PF13302 Acetyltransferase (GNAT) domain NRK98_14435 PF13302 Acetyltransferase (GNAT) domain NRK98_14445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRK98_14445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRK98_14450 PF07690 Major Facilitator Superfamily NRK98_14455 PF01725 Ham1 family NRK98_14460 PF06969 HemN C-terminal domain NRK98_14460 PF04055 Radical SAM superfamily NRK98_14465 PF03889 Alternative ribosome-rescue factor A NRK98_14470 PF01872 RibD C-terminal domain NRK98_14475 PF13411 MerR HTH family regulatory protein NRK98_14480 PF02142 MGS-like domain NRK98_14480 PF01808 AICARFT/IMPCHase bienzyme NRK98_14485 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NRK98_14485 PF02843 Phosphoribosylglycinamide synthetase, C domain NRK98_14485 PF02844 Phosphoribosylglycinamide synthetase, N domain NRK98_14505 PF04545 Sigma-70, region 4 NRK98_14505 PF04539 Sigma-70 region 3 NRK98_14505 PF04542 Sigma-70 region 2 NRK98_14505 PF00140 Sigma-70 factor, region 1.2 NRK98_14505 PF03979 Sigma-70 factor, region 1.1 NRK98_14505 PF04546 Sigma-70, non-essential region NRK98_14510 PF08278 DNA primase DnaG DnaB-binding NRK98_14510 PF08275 DNA primase catalytic core, N-terminal domain NRK98_14510 PF01807 CHC2 zinc finger NRK98_14510 PF10410 DnaB-helicase binding domain of primase NRK98_14515 PF09424 Yqey-like protein NRK98_14520 PF01165 Ribosomal protein S21 NRK98_14525 PF00814 Glycoprotease family NRK98_14530 PF04542 Sigma-70 region 2 NRK98_14530 PF04539 Sigma-70 region 3 NRK98_14530 PF04545 Sigma-70, region 4 NRK98_14530 PF00140 Sigma-70 factor, region 1.2 NRK98_14535 PF01476 LysM domain NRK98_14535 PF01551 Peptidase family M23 NRK98_14540 PF09335 SNARE associated Golgi protein NRK98_14550 PF01975 Survival protein SurE NRK98_14555 PF01142 tRNA pseudouridine synthase D (TruD) NRK98_14560 PF02542 YgbB family NRK98_14565 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRK98_14570 PF04977 Septum formation initiator NRK98_14575 PF00113 Enolase, C-terminal TIM barrel domain NRK98_14575 PF03952 Enolase, N-terminal domain NRK98_14580 PF06418 CTP synthase N-terminus NRK98_14580 PF00117 Glutamine amidotransferase class-I NRK98_14585 PF03819 MazG nucleotide pyrophosphohydrolase domain NRK98_14590 PF02824 TGS domain NRK98_14590 PF13291 ACT domain NRK98_14590 PF04607 Region found in RelA / SpoT proteins NRK98_14595 PF01938 TRAM domain NRK98_14595 PF05958 tRNA (Uracil-5-)-methyltransferase NRK98_14600 PF00672 HAMP domain NRK98_14600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_14600 PF00512 His Kinase A (phospho-acceptor) domain NRK98_14600 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK98_14600 PF00072 Response regulator receiver domain NRK98_14600 PF01627 Hpt domain NRK98_14605 PF07308 Protein of unknown function (DUF1456) NRK98_14610 PF01510 N-acetylmuramoyl-L-alanine amidase NRK98_14615 PF00455 DeoR C terminal sensor domain NRK98_14615 PF08220 DeoR-like helix-turn-helix domain NRK98_14620 PF08013 Tagatose 6 phosphate kinase NRK98_14625 PF01380 SIS domain NRK98_14630 PF03830 PTS system sorbose subfamily IIB component NRK98_14635 PF03609 PTS system sorbose-specific iic component NRK98_14640 PF03613 PTS system mannose/fructose/sorbose family IID component NRK98_14645 PF03610 PTS system fructose IIA component NRK98_14650 PF01979 Amidohydrolase family NRK98_14655 PF01116 Fructose-bisphosphate aldolase class-II NRK98_14660 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NRK98_14665 PF11967 Recombination protein O N terminal NRK98_14665 PF02565 Recombination protein O C terminal NRK98_14670 PF01926 50S ribosome-binding GTPase NRK98_14670 PF07650 KH domain NRK98_14675 PF14622 Ribonuclease-III-like NRK98_14675 PF00035 Double-stranded RNA binding motif NRK98_14680 PF10502 Signal peptidase, peptidase S26 NRK98_14685 PF06421 GTP-binding protein LepA C-terminus NRK98_14685 PF03144 Elongation factor Tu domain 2 NRK98_14685 PF00009 Elongation factor Tu GTP binding domain NRK98_14685 PF00679 Elongation factor G C-terminus NRK98_14695 PF17188 MucB/RseB C-terminal domain NRK98_14695 PF03888 MucB/RseB N-terminal domain NRK98_14700 PF03872 Anti sigma-E protein RseA, N-terminal domain NRK98_14700 PF03873 Anti sigma-E protein RseA, C-terminal domain NRK98_14705 PF08281 Sigma-70, region 4 NRK98_14705 PF04542 Sigma-70 region 2 NRK98_14710 PF02910 Fumarate reductase flavoprotein C-term NRK98_14710 PF00890 FAD binding domain NRK98_14720 PF03937 Flavinator of succinate dehydrogenase NRK98_14725 PF01571 Aminomethyltransferase folate-binding domain NRK98_14730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_14730 PF03466 LysR substrate binding domain NRK98_14745 PF03091 CutA1 divalent ion tolerance protein NRK98_14750 PF02683 Cytochrome C biogenesis protein transmembrane region NRK98_14750 PF11412 Disulphide bond corrector protein DsbC NRK98_14770 PF01266 FAD dependent oxidoreductase NRK98_14775 PF01116 Fructose-bisphosphate aldolase class-II NRK98_14780 PF00162 Phosphoglycerate kinase NRK98_14785 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRK98_14785 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRK98_14790 PF00480 ROK family NRK98_14795 PF01208 Uroporphyrinogen decarboxylase (URO-D) NRK98_14800 PF09297 NADH pyrophosphatase zinc ribbon domain NRK98_14800 PF00293 NUDIX domain NRK98_14805 PF01619 Proline dehydrogenase NRK98_14805 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NRK98_14805 PF14850 DNA-binding domain of Proline dehydrogenase NRK98_14805 PF00171 Aldehyde dehydrogenase family NRK98_14810 PF08239 Bacterial SH3 domain NRK98_14815 PF00520 Ion transport protein NRK98_14815 PF00027 Cyclic nucleotide-binding domain NRK98_14820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_14820 PF00672 HAMP domain NRK98_14820 PF02743 Cache domain NRK98_14830 PF03710 Glutamate-ammonia ligase adenylyltransferase NRK98_14830 PF08335 GlnD PII-uridylyltransferase NRK98_14845 PF05170 AsmA family NRK98_14850 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRK98_14850 PF00326 Prolyl oligopeptidase family NRK98_14855 PF00291 Pyridoxal-phosphate dependent enzyme NRK98_14860 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_14865 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_14870 PF00005 ABC transporter NRK98_14875 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_14880 PF02687 FtsX-like permease family NRK98_14880 PF12704 MacB-like periplasmic core domain NRK98_14880 PF00005 ABC transporter NRK98_14885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_14890 PF00072 Response regulator receiver domain NRK98_14890 PF00486 Transcriptional regulatory protein, C terminal NRK98_14895 PF16527 Two-component sensor protein CpxA, periplasmic domain NRK98_14895 PF00672 HAMP domain NRK98_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_14895 PF00512 His Kinase A (phospho-acceptor) domain NRK98_14900 PF00293 NUDIX domain NRK98_14900 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NRK98_14900 PF09297 NADH pyrophosphatase zinc ribbon domain NRK98_14930 PF03060 Nitronate monooxygenase NRK98_14940 PF00445 Ribonuclease T2 family NRK98_14955 PF00034 Cytochrome c NRK98_14955 PF03150 Di-haem cytochrome c peroxidase NRK98_14960 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase NRK98_14975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_14975 PF03466 LysR substrate binding domain NRK98_14980 PF00271 Helicase conserved C-terminal domain NRK98_14980 PF00270 DEAD/DEAH box helicase NRK98_14990 PF02525 Flavodoxin-like fold NRK98_14995 PF02627 Carboxymuconolactone decarboxylase family NRK98_15005 PF00753 Metallo-beta-lactamase superfamily NRK98_15015 PF01425 Amidase NRK98_15020 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRK98_15025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_15025 PF03466 LysR substrate binding domain NRK98_15030 PF04480 Protein of unknown function (DUF559) NRK98_15040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRK98_15045 PF00583 Acetyltransferase (GNAT) family NRK98_15050 PF00583 Acetyltransferase (GNAT) family NRK98_15060 PF03144 Elongation factor Tu domain 2 NRK98_15060 PF00009 Elongation factor Tu GTP binding domain NRK98_15060 PF16658 Class II release factor RF3, C-terminal domain NRK98_15065 PF00990 Diguanylate cyclase, GGDEF domain NRK98_15065 PF00072 Response regulator receiver domain NRK98_15070 PF00563 EAL domain NRK98_15070 PF00990 Diguanylate cyclase, GGDEF domain NRK98_15070 PF08448 PAS fold NRK98_15075 PF01037 Lrp/AsnC ligand binding domain NRK98_15085 PF05762 VWA domain containing CoxE-like protein NRK98_15090 PF07728 AAA domain (dynein-related subfamily) NRK98_15090 PF17868 AAA lid domain NRK98_15090 PF12592 Protein of unknown function (DUF3763) NRK98_15100 PF00583 Acetyltransferase (GNAT) family NRK98_15110 PF00501 AMP-binding enzyme NRK98_15115 PF04262 Glutamate-cysteine ligase NRK98_15120 PF00675 Insulinase (Peptidase family M16) NRK98_15120 PF05193 Peptidase M16 inactive domain NRK98_15125 PF09335 SNARE associated Golgi protein NRK98_15130 PF08659 KR domain NRK98_15130 PF14765 Polyketide synthase dehydratase NRK98_15130 PF00550 Phosphopantetheine attachment site NRK98_15130 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK98_15130 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK98_15130 PF16197 Ketoacyl-synthetase C-terminal extension NRK98_15130 PF08990 Erythronolide synthase docking NRK98_15130 PF08240 Alcohol dehydrogenase GroES-like domain NRK98_15130 PF00698 Acyl transferase domain NRK98_15140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK98_15160 PF00175 Oxidoreductase NAD-binding domain NRK98_15160 PF00970 Oxidoreductase FAD-binding domain NRK98_15165 PF03948 Ribosomal protein L9, C-terminal domain NRK98_15165 PF01281 Ribosomal protein L9, N-terminal domain NRK98_15170 PF01084 Ribosomal protein S18 NRK98_15175 PF01250 Ribosomal protein S6 NRK98_15180 PF01566 Natural resistance-associated macrophage protein NRK98_15190 PF03466 LysR substrate binding domain NRK98_15190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_15200 PF07690 Major Facilitator Superfamily NRK98_15220 PF00892 EamA-like transporter family NRK98_15225 PF13673 Acetyltransferase (GNAT) domain NRK98_15240 PF08032 RNA 2'-O ribose methyltransferase substrate binding NRK98_15240 PF00588 SpoU rRNA Methylase family NRK98_15250 PF02384 N-6 DNA Methylase NRK98_15260 PF00575 S1 RNA binding domain NRK98_15260 PF17876 Cold shock domain NRK98_15260 PF08461 Ribonuclease R winged-helix domain NRK98_15260 PF08206 Ribonuclease B OB domain NRK98_15260 PF00773 RNB domain NRK98_15265 PF00990 Diguanylate cyclase, GGDEF domain NRK98_15270 PF02664 S-Ribosylhomocysteinase (LuxS) NRK98_15280 PF00543 Nitrogen regulatory protein P-II NRK98_15285 PF00795 Carbon-nitrogen hydrolase NRK98_15285 PF02540 NAD synthase NRK98_15315 PF07963 Prokaryotic N-terminal methylation motif NRK98_15315 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor NRK98_15320 PF05567 Neisseria PilC beta-propeller domain NRK98_15345 PF02401 LytB protein NRK98_15350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK98_15355 PF01252 Signal peptidase (SPase) II NRK98_15360 PF00133 tRNA synthetases class I (I, L, M and V) NRK98_15360 PF06827 Zinc finger found in FPG and IleRS NRK98_15360 PF08264 Anticodon-binding domain of tRNA NRK98_15365 PF01687 Riboflavin kinase NRK98_15365 PF06574 FAD synthetase NRK98_15370 PF03023 Lipid II flippase MurJ NRK98_15375 PF01649 Ribosomal protein S20 NRK98_15380 PF01022 Bacterial regulatory protein, arsR family NRK98_15385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_15385 PF03466 LysR substrate binding domain NRK98_15395 PF06965 Na+/H+ antiporter 1 NRK98_15400 PF00303 Thymidylate synthase NRK98_15405 PF01790 Prolipoprotein diacylglyceryl transferase NRK98_15410 PF00391 PEP-utilising enzyme, mobile domain NRK98_15410 PF02896 PEP-utilising enzyme, TIM barrel domain NRK98_15410 PF01590 GAF domain NRK98_15410 PF05524 PEP-utilising enzyme, N-terminal NRK98_15415 PF00293 NUDIX domain NRK98_15420 PF02976 DNA mismatch repair enzyme MutH NRK98_15430 PF01245 Ribosomal protein L19 NRK98_15435 PF01746 tRNA (Guanine-1)-methyltransferase NRK98_15440 PF05239 PRC-barrel domain NRK98_15440 PF01782 RimM N-terminal domain NRK98_15445 PF00886 Ribosomal protein S16 NRK98_15450 PF02881 SRP54-type protein, helical bundle domain NRK98_15450 PF02978 Signal peptide binding domain NRK98_15450 PF00448 SRP54-type protein, GTPase domain NRK98_15455 PF01578 Cytochrome C assembly protein NRK98_15460 PF03471 Transporter associated domain NRK98_15460 PF01595 Cyclin M transmembrane N-terminal domain NRK98_15460 PF00571 CBS domain NRK98_15465 PF02082 Transcriptional regulator NRK98_15470 PF00970 Oxidoreductase FAD-binding domain NRK98_15470 PF00042 Globin NRK98_15470 PF00175 Oxidoreductase NAD-binding domain NRK98_15475 PF08238 Sel1 repeat NRK98_15480 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NRK98_15480 PF00056 lactate/malate dehydrogenase, NAD binding domain NRK98_15485 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_15490 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_15495 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_15500 PF00005 ABC transporter NRK98_15505 PF01316 Arginine repressor, DNA binding domain NRK98_15505 PF02863 Arginine repressor, C-terminal domain NRK98_15510 PF04261 Dyp-type peroxidase family NRK98_15515 PF00005 ABC transporter NRK98_15515 PF08402 TOBE domain NRK98_15525 PF13416 Bacterial extracellular solute-binding protein NRK98_15530 PF00543 Nitrogen regulatory protein P-II NRK98_15535 PF00472 RF-1 domain NRK98_15540 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRK98_15540 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRK98_15545 PF01773 Na+ dependent nucleoside transporter N-terminus NRK98_15545 PF07670 Nucleoside recognition NRK98_15545 PF07662 Na+ dependent nucleoside transporter C-terminus NRK98_15550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_15550 PF03466 LysR substrate binding domain NRK98_15555 PF00255 Glutathione peroxidase NRK98_15565 PF02595 Glycerate kinase family NRK98_15570 PF02447 GntP family permease NRK98_15575 PF05651 Putative sugar diacid recognition NRK98_15575 PF17853 GGDEF-like domain NRK98_15575 PF13556 PucR C-terminal helix-turn-helix domain NRK98_15580 PF06062 Uncharacterised protein family (UPF0231) NRK98_15595 PF03372 Endonuclease/Exonuclease/phosphatase family NRK98_15610 PF00271 Helicase conserved C-terminal domain NRK98_15610 PF00270 DEAD/DEAH box helicase NRK98_15620 PF08534 Redoxin NRK98_15625 PF00403 Heavy-metal-associated domain NRK98_15630 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRK98_15630 PF11852 Domain of unknown function (DUF3372) NRK98_15630 PF03714 Bacterial pullanase-associated domain NRK98_15630 PF18494 Pullulanase Ins domain NRK98_15630 PF17967 Pullulanase N2 domain NRK98_15645 PF02583 Metal-sensitive transcriptional repressor NRK98_15650 PF00155 Aminotransferase class I and II NRK98_15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_15655 PF03466 LysR substrate binding domain NRK98_15665 PF04055 Radical SAM superfamily NRK98_15670 PF11230 Protein of unknown function (DUF3029) NRK98_15690 PF07676 WD40-like Beta Propeller Repeat NRK98_15690 PF14684 Tricorn protease C1 domain NRK98_15690 PF14685 Tricorn protease PDZ domain NRK98_15690 PF03572 Peptidase family S41 NRK98_15720 PF08269 Cache domain NRK98_15720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_15725 PF18416 N-acetylglucosamine binding protein domain 2 NRK98_15725 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRK98_15730 PF03466 LysR substrate binding domain NRK98_15730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_15735 PF00005 ABC transporter NRK98_15735 PF12857 TOBE-like domain NRK98_15740 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_15745 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_15760 PF13194 Domain of unknown function (DUF4010) NRK98_15765 PF14602 Hexapeptide repeat of succinyl-transferase NRK98_15765 PF12464 Maltose acetyltransferase NRK98_15790 PF14698 Argininosuccinate lyase C-terminal NRK98_15790 PF00206 Lyase NRK98_15800 PF00764 Arginosuccinate synthase NRK98_15805 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRK98_15805 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRK98_15810 PF00696 Amino acid kinase family NRK98_15815 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRK98_15815 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRK98_15820 PF07687 Peptidase dimerisation domain NRK98_15820 PF01546 Peptidase family M20/M25/M40 NRK98_15825 PF00311 Phosphoenolpyruvate carboxylase NRK98_15830 PF03447 Homoserine dehydrogenase, NAD binding domain NRK98_15830 PF00696 Amino acid kinase family NRK98_15830 PF00742 Homoserine dehydrogenase NRK98_15835 PF01053 Cys/Met metabolism PLP-dependent enzyme NRK98_15840 PF01340 Met Apo-repressor, MetJ NRK98_15845 PF12833 Helix-turn-helix domain NRK98_15845 PF06445 GyrI-like small molecule binding domain NRK98_15850 PF01588 Putative tRNA binding domain NRK98_15855 PF03222 Tryptophan/tyrosine permease family NRK98_15860 PF00459 Inositol monophosphatase family NRK98_15865 PF00293 NUDIX domain NRK98_15870 PF13419 Haloacid dehalogenase-like hydrolase NRK98_15875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRK98_15880 PF03466 LysR substrate binding domain NRK98_15880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_15885 PF00579 tRNA synthetases class I (W and Y) NRK98_15885 PF01479 S4 domain NRK98_15890 PF00196 Bacterial regulatory proteins, luxR family NRK98_15895 PF01203 Type II secretion system (T2SS), protein N NRK98_15900 PF04612 Type II secretion system (T2SS), protein M NRK98_15905 PF12693 GspL periplasmic domain NRK98_15905 PF05134 Type II secretion system (T2SS), protein L NRK98_15910 PF03934 Type II secretion system (T2SS), protein K NRK98_15915 PF07963 Prokaryotic N-terminal methylation motif NRK98_15915 PF11612 Type II secretion system (T2SS), protein J NRK98_15920 PF02501 Type II secretion system (T2SS), protein I NRK98_15920 PF07963 Prokaryotic N-terminal methylation motif NRK98_15925 PF07963 Prokaryotic N-terminal methylation motif NRK98_15925 PF12019 Type II transport protein GspH NRK98_15930 PF07963 Prokaryotic N-terminal methylation motif NRK98_15930 PF08334 Type II secretion system (T2SS), protein G NRK98_15935 PF00482 Type II secretion system (T2SS), protein F NRK98_15940 PF00437 Type II/IV secretion system protein NRK98_15945 PF00263 Bacterial type II and III secretion system protein NRK98_15945 PF03958 Bacterial type II/III secretion system short domain NRK98_15950 PF11356 Type II secretion system protein C NRK98_15955 PF01479 S4 domain NRK98_15960 PF01430 Hsp33 protein NRK98_15965 PF01293 Phosphoenolpyruvate carboxykinase NRK98_15970 PF00392 Bacterial regulatory proteins, gntR family NRK98_15975 PF00557 Metallopeptidase family M24 NRK98_15975 PF01321 Creatinase/Prolidase N-terminal domain NRK98_15985 PF00583 Acetyltransferase (GNAT) family NRK98_15990 PF05433 Glycine zipper 2TM domain NRK98_15995 PF00149 Calcineurin-like phosphoesterase NRK98_15995 PF02872 5'-nucleotidase, C-terminal domain NRK98_16000 PF01810 LysE type translocator NRK98_16005 PF03472 Autoinducer binding domain NRK98_16005 PF00196 Bacterial regulatory proteins, luxR family NRK98_16010 PF00765 Autoinducer synthase NRK98_16015 PF03466 LysR substrate binding domain NRK98_16015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_16020 PF17876 Cold shock domain NRK98_16020 PF00773 RNB domain NRK98_16020 PF08206 Ribonuclease B OB domain NRK98_16025 PF00440 Bacterial regulatory proteins, tetR family NRK98_16035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRK98_16035 PF02378 Phosphotransferase system, EIIC NRK98_16035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK98_16040 PF01232 Mannitol dehydrogenase Rossmann domain NRK98_16040 PF08125 Mannitol dehydrogenase C-terminal domain NRK98_16045 PF05068 Mannitol repressor NRK98_16050 PF00999 Sodium/hydrogen exchanger family NRK98_16050 PF03471 Transporter associated domain NRK98_16050 PF02080 TrkA-C domain NRK98_16070 PF01544 CorA-like Mg2+ transporter protein NRK98_16075 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NRK98_16090 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRK98_16095 PF07670 Nucleoside recognition NRK98_16095 PF01773 Na+ dependent nucleoside transporter N-terminus NRK98_16095 PF07662 Na+ dependent nucleoside transporter C-terminus NRK98_16100 PF03880 DbpA RNA binding domain NRK98_16100 PF00270 DEAD/DEAH box helicase NRK98_16100 PF00271 Helicase conserved C-terminal domain NRK98_16125 PF01040 UbiA prenyltransferase family NRK98_16130 PF00425 chorismate binding enzyme NRK98_16135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRK98_16135 PF16582 Middle domain of thiamine pyrophosphate NRK98_16135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK98_16140 PF12697 Alpha/beta hydrolase family NRK98_16145 PF00378 Enoyl-CoA hydratase/isomerase NRK98_16150 PF13378 Enolase C-terminal domain-like NRK98_16155 PF00501 AMP-binding enzyme NRK98_16160 PF00072 Response regulator receiver domain NRK98_16160 PF00486 Transcriptional regulatory protein, C terminal NRK98_16165 PF00419 Fimbrial protein NRK98_16175 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NRK98_16175 PF02753 Pili assembly chaperone PapD, C-terminal domain NRK98_16180 PF00577 Outer membrane usher protein NRK98_16180 PF13953 PapC C-terminal domain NRK98_16180 PF13954 PapC N-terminal domain NRK98_16190 PF00419 Fimbrial protein NRK98_16200 PF01752 Collagenase NRK98_16200 PF08453 Peptidase family M9 N-terminal NRK98_16205 PF02698 DUF218 domain NRK98_16210 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRK98_16210 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRK98_16220 PF00561 alpha/beta hydrolase fold NRK98_16225 PF03280 Proteobacterial lipase chaperone protein NRK98_16240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK98_16240 PF12793 Sugar transport-related sRNA regulator N-term NRK98_16250 PF01053 Cys/Met metabolism PLP-dependent enzyme NRK98_16260 PF00465 Iron-containing alcohol dehydrogenase NRK98_16270 PF03577 Peptidase family C69 NRK98_16275 PF00106 short chain dehydrogenase NRK98_16295 PF02308 MgtC family NRK98_16300 PF00128 Alpha amylase, catalytic domain NRK98_16300 PF02903 Alpha amylase, N-terminal ig-like domain NRK98_16300 PF16657 Maltogenic Amylase, C-terminal domain NRK98_16315 PF00884 Sulfatase NRK98_16320 PF01037 Lrp/AsnC ligand binding domain NRK98_16330 PF04204 Homoserine O-succinyltransferase NRK98_16335 PF00013 KH domain NRK98_16335 PF12072 Domain of unknown function (DUF3552) NRK98_16335 PF01966 HD domain NRK98_16340 PF02464 Competence-damaged protein NRK98_16340 PF00994 Probable molybdopterin binding domain NRK98_16350 PF00005 ABC transporter NRK98_16370 PF07722 Peptidase C26 NRK98_16380 PF00027 Cyclic nucleotide-binding domain NRK98_16380 PF13545 Crp-like helix-turn-helix domain NRK98_16390 PF13419 Haloacid dehalogenase-like hydrolase NRK98_16395 PF02899 Phage integrase, N-terminal SAM-like domain NRK98_16395 PF00589 Phage integrase family NRK98_16405 PF01678 Diaminopimelate epimerase NRK98_16410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRK98_16410 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRK98_16420 PF01491 Frataxin-like domain NRK98_16425 PF02230 Phospholipase/Carboxylesterase NRK98_16430 PF12633 Adenylate cyclase NT domain NRK98_16430 PF01295 Adenylate cyclase, class-I NRK98_16435 PF03900 Porphobilinogen deaminase, C-terminal domain NRK98_16435 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NRK98_16440 PF02602 Uroporphyrinogen-III synthase HemD NRK98_16445 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NRK98_16455 PF03692 Putative zinc- or iron-chelating domain NRK98_16460 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NRK98_16475 PF07715 TonB-dependent Receptor Plug Domain NRK98_16475 PF00593 TonB dependent receptor NRK98_16495 PF00583 Acetyltransferase (GNAT) family NRK98_16495 PF13508 Acetyltransferase (GNAT) domain NRK98_16500 PF01638 HxlR-like helix-turn-helix NRK98_16505 PF08803 Putative mono-oxygenase ydhR NRK98_16520 PF06055 Exopolysaccharide synthesis, ExoD NRK98_16530 PF00990 Diguanylate cyclase, GGDEF domain NRK98_16545 PF13036 Peptidoglycan-synthase activator LpoB NRK98_16555 PF04055 Radical SAM superfamily NRK98_16555 PF06968 Biotin and Thiamin Synthesis associated domain NRK98_16560 PF05690 Thiazole biosynthesis protein ThiG NRK98_16570 PF00899 ThiF family NRK98_16575 PF02581 Thiamine monophosphate synthase NRK98_16580 PF13667 ThiC-associated domain NRK98_16580 PF01964 Radical SAM ThiC family NRK98_16585 PF17425 Arylsulfotransferase Ig-like domain NRK98_16585 PF05935 Arylsulfotransferase (ASST) NRK98_16590 PF01117 Aerolysin toxin NRK98_16590 PF03440 Aerolysin/Pertussis toxin (APT) domain NRK98_16605 PF00072 Response regulator receiver domain NRK98_16605 PF00486 Transcriptional regulatory protein, C terminal NRK98_16610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_16615 PF08443 RimK-like ATP-grasp domain NRK98_16615 PF18030 RimK PreATP-grasp domain NRK98_16620 PF02310 B12 binding domain NRK98_16620 PF00809 Pterin binding enzyme NRK98_16620 PF02607 B12 binding domain NRK98_16620 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRK98_16620 PF02574 Homocysteine S-methyltransferase NRK98_16625 PF00999 Sodium/hydrogen exchanger family NRK98_16635 PF00356 Bacterial regulatory proteins, lacI family NRK98_16640 PF03553 Na+/H+ antiporter family NRK98_16645 PF00155 Aminotransferase class I and II NRK98_16665 PF04228 Putative neutral zinc metallopeptidase NRK98_16670 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) NRK98_16685 PF13426 PAS domain NRK98_16685 PF08447 PAS fold NRK98_16685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_16690 PF08678 Rsbr N terminal NRK98_16690 PF01740 STAS domain NRK98_16695 PF13581 Histidine kinase-like ATPase domain NRK98_16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_16700 PF00512 His Kinase A (phospho-acceptor) domain NRK98_16700 PF01627 Hpt domain NRK98_16700 PF00072 Response regulator receiver domain NRK98_16700 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK98_16700 PF00672 HAMP domain NRK98_16705 PF00072 Response regulator receiver domain NRK98_16715 PF07690 Major Facilitator Superfamily NRK98_16720 PF01914 MarC family integral membrane protein NRK98_16730 PF01523 Putative modulator of DNA gyrase NRK98_16735 PF00795 Carbon-nitrogen hydrolase NRK98_16745 PF13116 Protein of unknown function NRK98_16745 PF13502 AsmA-like C-terminal region NRK98_16750 PF10150 Ribonuclease E/G family NRK98_16750 PF00575 S1 RNA binding domain NRK98_16755 PF02545 Maf-like protein NRK98_16760 PF04093 rod shape-determining protein MreD NRK98_16765 PF04085 rod shape-determining protein MreC NRK98_16795 PF14245 Type IV pilin PilA NRK98_16795 PF07963 Prokaryotic N-terminal methylation motif NRK98_16800 PF07963 Prokaryotic N-terminal methylation motif NRK98_16805 PF07963 Prokaryotic N-terminal methylation motif NRK98_16815 PF00482 Type II secretion system (T2SS), protein F NRK98_16820 PF00437 Type II/IV secretion system protein NRK98_16820 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRK98_16835 PF00263 Bacterial type II and III secretion system protein NRK98_16835 PF03958 Bacterial type II/III secretion system short domain NRK98_16865 PF00563 EAL domain NRK98_16865 PF17157 Gammaproteobacterial periplasmic sensor domain NRK98_16865 PF00990 Diguanylate cyclase, GGDEF domain NRK98_16870 PF00563 EAL domain NRK98_16870 PF12792 CSS motif domain associated with EAL NRK98_16875 PF01699 Sodium/calcium exchanger protein NRK98_16880 PF00221 Aromatic amino acid lyase NRK98_16885 PF01175 Urocanase Rossmann-like domain NRK98_16885 PF17392 Urocanase C-terminal domain NRK98_16885 PF17391 Urocanase N-terminal domain NRK98_16890 PF00491 Arginase family NRK98_16895 PF01979 Amidohydrolase family NRK98_16900 PF00392 Bacterial regulatory proteins, gntR family NRK98_16900 PF07702 UTRA domain NRK98_16905 PF00484 Carbonic anhydrase NRK98_16910 PF00140 Sigma-70 factor, region 1.2 NRK98_16910 PF04542 Sigma-70 region 2 NRK98_16910 PF04545 Sigma-70, region 4 NRK98_16915 PF18075 FtsX extracellular domain NRK98_16920 PF00005 ABC transporter NRK98_16925 PF00448 SRP54-type protein, GTPase domain NRK98_16925 PF02881 SRP54-type protein, helical bundle domain NRK98_16945 PF00440 Bacterial regulatory proteins, tetR family NRK98_16955 PF13091 PLD-like domain NRK98_16965 PF01464 Transglycosylase SLT domain NRK98_16975 PF02416 mttA/Hcf106 family NRK98_16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_16980 PF03466 LysR substrate binding domain NRK98_16985 PF01914 MarC family integral membrane protein NRK98_16990 PF10678 Protein of unknown function (DUF2492) NRK98_16995 PF00375 Sodium:dicarboxylate symporter family NRK98_17005 PF03466 LysR substrate binding domain NRK98_17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_17010 PF13533 Biotin-lipoyl like NRK98_17015 PF07690 Major Facilitator Superfamily NRK98_17020 PF07947 YhhN family NRK98_17035 PF16868 NMT1-like family NRK98_17040 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRK98_17040 PF00326 Prolyl oligopeptidase family NRK98_17055 PF00106 short chain dehydrogenase NRK98_17060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_17060 PF03466 LysR substrate binding domain NRK98_17065 PF02525 Flavodoxin-like fold NRK98_17070 PF00999 Sodium/hydrogen exchanger family NRK98_17070 PF02254 TrkA-N domain NRK98_17110 PF01196 Ribosomal protein L17 NRK98_17115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NRK98_17115 PF01000 RNA polymerase Rpb3/RpoA insert domain NRK98_17115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NRK98_17120 PF00163 Ribosomal protein S4/S9 N-terminal domain NRK98_17120 PF01479 S4 domain NRK98_17125 PF00411 Ribosomal protein S11 NRK98_17130 PF00416 Ribosomal protein S13/S18 NRK98_17135 PF00444 Ribosomal protein L36 NRK98_17140 PF00344 SecY translocase NRK98_17145 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NRK98_17150 PF00327 Ribosomal protein L30p/L7e NRK98_17155 PF03719 Ribosomal protein S5, C-terminal domain NRK98_17155 PF00333 Ribosomal protein S5, N-terminal domain NRK98_17160 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NRK98_17165 PF00347 Ribosomal protein L6 NRK98_17170 PF00410 Ribosomal protein S8 NRK98_17175 PF00253 Ribosomal protein S14p/S29e NRK98_17180 PF00281 Ribosomal protein L5 NRK98_17180 PF00673 ribosomal L5P family C-terminus NRK98_17185 PF00467 KOW motif NRK98_17185 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NRK98_17190 PF00238 Ribosomal protein L14p/L23e NRK98_17195 PF00366 Ribosomal protein S17 NRK98_17200 PF00831 Ribosomal L29 protein NRK98_17205 PF00252 Ribosomal protein L16p/L10e NRK98_17210 PF07650 KH domain NRK98_17210 PF00189 Ribosomal protein S3, C-terminal domain NRK98_17215 PF00237 Ribosomal protein L22p/L17e NRK98_17220 PF00203 Ribosomal protein S19 NRK98_17225 PF03947 Ribosomal Proteins L2, C-terminal domain NRK98_17225 PF00181 Ribosomal Proteins L2, RNA binding domain NRK98_17230 PF00276 Ribosomal protein L23 NRK98_17235 PF00573 Ribosomal protein L4/L1 family NRK98_17240 PF00297 Ribosomal protein L3 NRK98_17245 PF00338 Ribosomal protein S10p/S20e NRK98_17255 PF00672 HAMP domain NRK98_17255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_17255 PF00512 His Kinase A (phospho-acceptor) domain NRK98_17260 PF00486 Transcriptional regulatory protein, C terminal NRK98_17260 PF00072 Response regulator receiver domain NRK98_17265 PF03449 Transcription elongation factor, N-terminal NRK98_17265 PF01272 Transcription elongation factor, GreA/GreB, C-term NRK98_17270 PF09371 Tex-like protein N-terminal domain NRK98_17270 PF16921 Tex protein YqgF-like domain NRK98_17270 PF00575 S1 RNA binding domain NRK98_17270 PF17674 HHH domain NRK98_17290 PF00561 alpha/beta hydrolase fold NRK98_17295 PF00156 Phosphoribosyl transferase domain NRK98_17300 PF01521 Iron-sulphur cluster biosynthesis NRK98_17300 PF01106 NifU-like domain NRK98_17305 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NRK98_17305 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NRK98_17310 PF02556 Preprotein translocase subunit SecB NRK98_17315 PF00581 Rhodanese-like domain NRK98_17320 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NRK98_17320 PF01676 Metalloenzyme superfamily NRK98_17325 PF01551 Peptidase family M23 NRK98_17335 PF00356 Bacterial regulatory proteins, lacI family NRK98_17335 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK98_17340 PF01081 KDPG and KHG aldolase NRK98_17345 PF00920 Dehydratase family NRK98_17350 PF01202 Shikimate kinase NRK98_17355 PF02447 GntP family permease NRK98_17360 PF13091 PLD-like domain NRK98_17365 PF00270 DEAD/DEAH box helicase NRK98_17365 PF00271 Helicase conserved C-terminal domain NRK98_17365 PF17191 RecG wedge domain NRK98_17375 PF00583 Acetyltransferase (GNAT) family NRK98_17375 PF09500 Putative thioesterase (yiiD_Cterm) NRK98_17385 PF02580 D-Tyr-tRNA(Tyr) deacylase NRK98_17390 PF03631 Virulence factor BrkB NRK98_17395 PF03631 Virulence factor BrkB NRK98_17400 PF00009 Elongation factor Tu GTP binding domain NRK98_17400 PF00679 Elongation factor G C-terminus NRK98_17400 PF03144 Elongation factor Tu domain 2 NRK98_17405 PF00120 Glutamine synthetase, catalytic domain NRK98_17405 PF03951 Glutamine synthetase, beta-Grasp domain NRK98_17415 PF00512 His Kinase A (phospho-acceptor) domain NRK98_17415 PF00989 PAS fold NRK98_17415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_17420 PF02954 Bacterial regulatory protein, Fis family NRK98_17420 PF00158 Sigma-54 interaction domain NRK98_17420 PF00072 Response regulator receiver domain NRK98_17425 PF00962 Adenosine/AMP deaminase NRK98_17430 PF04055 Radical SAM superfamily NRK98_17430 PF06969 HemN C-terminal domain NRK98_17435 PF10675 Protein of unknown function (DUF2489) NRK98_17440 PF04220 Der GTPase activator (YihI) NRK98_17445 PF00034 Cytochrome c NRK98_17450 PF01926 50S ribosome-binding GTPase NRK98_17455 PF07369 Protein of unknown function (DUF1488) NRK98_17460 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NRK98_17460 PF08501 Shikimate dehydrogenase substrate binding domain NRK98_17460 PF01488 Shikimate / quinate 5-dehydrogenase NRK98_17465 PF01218 Coproporphyrinogen III oxidase NRK98_17470 PF01300 Telomere recombination NRK98_17475 PF00731 AIR carboxylase NRK98_17480 PF01396 Topoisomerase DNA binding C4 zinc finger NRK98_17485 PF04361 Protein of unknown function (DUF494) NRK98_17490 PF17782 DprA winged helix domain NRK98_17490 PF02481 DNA recombination-mediator protein A NRK98_17500 PF01327 Polypeptide deformylase NRK98_17505 PF02911 Formyl transferase, C-terminal domain NRK98_17505 PF00551 Formyl transferase NRK98_17510 PF01189 16S rRNA methyltransferase RsmB/F NRK98_17510 PF01029 NusB family NRK98_17515 PF02080 TrkA-C domain NRK98_17515 PF02254 TrkA-N domain NRK98_17520 PF02386 Cation transport protein NRK98_17525 PF02646 RmuC family NRK98_17540 PF02082 Transcriptional regulator NRK98_17545 PF00294 pfkB family carbohydrate kinase NRK98_17550 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRK98_17550 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRK98_17555 PF00117 Glutamine amidotransferase class-I NRK98_17555 PF02540 NAD synthase NRK98_17555 PF00958 GMP synthase C terminal domain NRK98_17560 PF00171 Aldehyde dehydrogenase family NRK98_17565 PF00202 Aminotransferase class-III NRK98_17570 PF07883 Cupin domain NRK98_17570 PF01381 Helix-turn-helix NRK98_17575 PF00171 Aldehyde dehydrogenase family NRK98_17585 PF00892 EamA-like transporter family NRK98_17590 PF12833 Helix-turn-helix domain NRK98_17595 PF01810 LysE type translocator NRK98_17600 PF00689 Cation transporting ATPase, C-terminus NRK98_17600 PF00690 Cation transporter/ATPase, N-terminus NRK98_17605 PF04143 Sulphur transport NRK98_17610 PF01810 LysE type translocator NRK98_17620 PF06206 CpeT/CpcT family (DUF1001) NRK98_17655 PF14001 YdfZ protein NRK98_17665 PF03466 LysR substrate binding domain NRK98_17665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_17700 PF00580 UvrD/REP helicase N-terminal domain NRK98_17700 PF13361 UvrD-like helicase C-terminal domain NRK98_17705 PF02608 ABC transporter substrate-binding protein PnrA-like NRK98_17710 PF00005 ABC transporter NRK98_17715 PF02653 Branched-chain amino acid transport system / permease component NRK98_17720 PF02653 Branched-chain amino acid transport system / permease component NRK98_17725 PF03466 LysR substrate binding domain NRK98_17725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_17730 PF08240 Alcohol dehydrogenase GroES-like domain NRK98_17730 PF00107 Zinc-binding dehydrogenase NRK98_17735 PF00756 Putative esterase NRK98_17745 PF12867 DinB superfamily NRK98_17745 PF03781 Sulfatase-modifying factor enzyme 1 NRK98_17750 PF13593 SBF-like CPA transporter family (DUF4137) NRK98_17755 PF13520 Amino acid permease NRK98_17760 PF01588 Putative tRNA binding domain NRK98_17765 PF13520 Amino acid permease NRK98_17770 PF04074 YhcH/YjgK/YiaL NRK98_17775 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRK98_17775 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRK98_17775 PF00703 Glycosyl hydrolases family 2 NRK98_17775 PF16353 Domain of unknown function(DUF4981) NRK98_17775 PF02929 Beta galactosidase small chain NRK98_17780 PF00356 Bacterial regulatory proteins, lacI family NRK98_17815 PF00132 Bacterial transferase hexapeptide (six repeats) NRK98_17820 PF01367 5'-3' exonuclease, C-terminal SAM fold NRK98_17820 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRK98_17820 PF01612 3'-5' exonuclease NRK98_17820 PF00476 DNA polymerase family A NRK98_17830 PF06005 Cell division protein ZapB NRK98_17840 PF00132 Bacterial transferase hexapeptide (six repeats) NRK98_17840 PF06426 Serine acetyltransferase, N-terminal NRK98_17845 PF01545 Cation efflux family NRK98_17845 PF16916 Dimerisation domain of Zinc Transporter NRK98_17850 PF00072 Response regulator receiver domain NRK98_17850 PF00486 Transcriptional regulatory protein, C terminal NRK98_17855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_17855 PF00672 HAMP domain NRK98_17855 PF16527 Two-component sensor protein CpxA, periplasmic domain NRK98_17855 PF00512 His Kinase A (phospho-acceptor) domain NRK98_17860 PF00588 SpoU rRNA Methylase family NRK98_17865 PF01554 MatE NRK98_17870 PF02630 SCO1/SenC NRK98_17880 PF00717 Peptidase S24-like NRK98_17880 PF01726 LexA DNA binding domain NRK98_17885 PF01553 Acyltransferase NRK98_17890 PF01040 UbiA prenyltransferase family NRK98_17895 PF04345 Chorismate lyase NRK98_17900 PF03748 Flagellar basal body-associated protein FliL NRK98_17920 PF00107 Zinc-binding dehydrogenase NRK98_17920 PF08240 Alcohol dehydrogenase GroES-like domain NRK98_17925 PF00356 Bacterial regulatory proteins, lacI family NRK98_17925 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK98_17930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK98_17940 PF03611 PTS system sugar-specific permease component NRK98_17945 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NRK98_17950 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRK98_17955 PF00535 Glycosyl transferase family 2 NRK98_17960 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRK98_17965 PF01467 Cytidylyltransferase-like NRK98_17970 PF04393 Protein of unknown function (DUF535) NRK98_17975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NRK98_17975 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NRK98_17975 PF06827 Zinc finger found in FPG and IleRS NRK98_17985 PF00471 Ribosomal protein L33 NRK98_17990 PF00830 Ribosomal L28 family NRK98_17995 PF04002 RadC-like JAB domain NRK98_18000 PF02441 Flavoprotein NRK98_18000 PF04127 DNA / pantothenate metabolism flavoprotein NRK98_18005 PF00692 dUTPase NRK98_18010 PF00440 Bacterial regulatory proteins, tetR family NRK98_18015 PF00924 Mechanosensitive ion channel NRK98_18015 PF05552 Conserved TM helix NRK98_18025 PF00342 Phosphoglucose isomerase NRK98_18030 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NRK98_18030 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NRK98_18035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_18035 PF03466 LysR substrate binding domain NRK98_18050 PF00583 Acetyltransferase (GNAT) family NRK98_18050 PF13380 CoA binding domain NRK98_18050 PF13607 Succinyl-CoA ligase like flavodoxin domain NRK98_18080 PF12724 Flavodoxin domain NRK98_18085 PF02386 Cation transport protein NRK98_18090 PF09186 Domain of unknown function (DUF1949) NRK98_18090 PF01205 Uncharacterized protein family UPF0029 NRK98_18095 PF00557 Metallopeptidase family M24 NRK98_18100 PF13193 AMP-binding enzyme C-terminal domain NRK98_18100 PF00501 AMP-binding enzyme NRK98_18105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRK98_18105 PF00378 Enoyl-CoA hydratase/isomerase NRK98_18105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRK98_18110 PF02803 Thiolase, C-terminal domain NRK98_18110 PF00108 Thiolase, N-terminal domain NRK98_18115 PF00486 Transcriptional regulatory protein, C terminal NRK98_18115 PF00072 Response regulator receiver domain NRK98_18120 PF00672 HAMP domain NRK98_18120 PF00512 His Kinase A (phospho-acceptor) domain NRK98_18120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_18125 PF01547 Bacterial extracellular solute-binding protein NRK98_18135 PF01206 Sulfurtransferase TusA NRK98_18140 PF01042 Endoribonuclease L-PSP NRK98_18150 PF13488 Glycine zipper NRK98_18150 PF00691 OmpA family NRK98_18155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_18155 PF00672 HAMP domain NRK98_18160 PF03352 Methyladenine glycosylase NRK98_18165 PF02091 Glycyl-tRNA synthetase alpha subunit NRK98_18170 PF05746 DALR anticodon binding domain NRK98_18170 PF02092 Glycyl-tRNA synthetase beta subunit NRK98_18180 PF01202 Shikimate kinase NRK98_18205 PF03222 Tryptophan/tyrosine permease family NRK98_18210 PF12801 4Fe-4S binding domain NRK98_18215 PF00392 Bacterial regulatory proteins, gntR family NRK98_18215 PF07702 UTRA domain NRK98_18220 PF00367 phosphotransferase system, EIIB NRK98_18220 PF02378 Phosphotransferase system, EIIC NRK98_18225 PF02056 Family 4 glycosyl hydrolase NRK98_18225 PF11975 Family 4 glycosyl hydrolase C-terminal domain NRK98_18230 PF00356 Bacterial regulatory proteins, lacI family NRK98_18235 PF13458 Periplasmic binding protein NRK98_18240 PF02653 Branched-chain amino acid transport system / permease component NRK98_18245 PF02653 Branched-chain amino acid transport system / permease component NRK98_18245 PF11862 Domain of unknown function (DUF3382) NRK98_18250 PF00005 ABC transporter NRK98_18250 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRK98_18255 PF00005 ABC transporter NRK98_18270 PF00581 Rhodanese-like domain NRK98_18275 PF01694 Rhomboid family NRK98_18275 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NRK98_18280 PF12262 Bacterial virulence factor lipase N-terminal NRK98_18285 PF04380 Membrane fusogenic activity NRK98_18290 PF00175 Oxidoreductase NAD-binding domain NRK98_18295 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NRK98_18305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK98_18305 PF07498 Rho termination factor, N-terminal domain NRK98_18305 PF07497 Rho termination factor, RNA-binding domain NRK98_18310 PF00085 Thioredoxin NRK98_18315 PF00270 DEAD/DEAH box helicase NRK98_18315 PF00271 Helicase conserved C-terminal domain NRK98_18320 PF02541 Ppx/GppA phosphatase family NRK98_18335 PF04445 Putative SAM-dependent methyltransferase NRK98_18340 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_18345 PF00990 Diguanylate cyclase, GGDEF domain NRK98_18345 PF03707 Bacterial signalling protein N terminal repeat NRK98_18345 PF00563 EAL domain NRK98_18350 PF01432 Peptidase family M3 NRK98_18355 PF00490 Delta-aminolevulinic acid dehydratase NRK98_18360 PF01026 TatD related DNase NRK98_18365 PF00902 Sec-independent protein translocase protein (TatC) NRK98_18370 PF02416 mttA/Hcf106 family NRK98_18375 PF02416 mttA/Hcf106 family NRK98_18380 PF03109 ABC1 family NRK98_18385 PF02036 SCP-2 sterol transfer family NRK98_18390 PF01209 ubiE/COQ5 methyltransferase family NRK98_18395 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NRK98_18400 PF07969 Amidohydrolase family NRK98_18445 PF03544 Gram-negative bacterial TonB protein C-terminal NRK98_18450 PF02472 Biopolymer transport protein ExbD/TolR NRK98_18455 PF01618 MotA/TolQ/ExbB proton channel family NRK98_18460 PF01618 MotA/TolQ/ExbB proton channel family NRK98_18470 PF03472 Autoinducer binding domain NRK98_18470 PF00196 Bacterial regulatory proteins, luxR family NRK98_18475 PF01380 SIS domain NRK98_18480 PF00455 DeoR C terminal sensor domain NRK98_18480 PF08220 DeoR-like helix-turn-helix domain NRK98_18485 PF00072 Response regulator receiver domain NRK98_18485 PF00486 Transcriptional regulatory protein, C terminal NRK98_18490 PF00672 HAMP domain NRK98_18490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_18490 PF00512 His Kinase A (phospho-acceptor) domain NRK98_18495 PF00905 Penicillin binding protein transpeptidase domain NRK98_18500 PF06123 Inner membrane protein CreD NRK98_18505 PF14602 Hexapeptide repeat of succinyl-transferase NRK98_18505 PF12804 MobA-like NTP transferase domain NRK98_18505 PF00132 Bacterial transferase hexapeptide (six repeats) NRK98_18510 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NRK98_18510 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NRK98_18515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK98_18515 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRK98_18520 PF00231 ATP synthase NRK98_18525 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRK98_18525 PF00306 ATP synthase alpha/beta chain, C terminal domain NRK98_18525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK98_18530 PF00213 ATP synthase delta (OSCP) subunit NRK98_18535 PF00430 ATP synthase B/B' CF(0) NRK98_18540 PF00137 ATP synthase subunit C NRK98_18545 PF00119 ATP synthase A chain NRK98_18555 PF02195 ParB-like nuclease domain NRK98_18555 PF17762 HTH domain found in ParB protein NRK98_18560 PF13614 AAA domain NRK98_18565 PF02527 rRNA small subunit methyltransferase G NRK98_18570 PF01134 Glucose inhibited division protein A NRK98_18570 PF13932 GidA associated domain NRK98_18575 PF00258 Flavodoxin NRK98_18580 PF07715 TonB-dependent Receptor Plug Domain NRK98_18580 PF00593 TonB dependent receptor NRK98_18585 PF00005 ABC transporter NRK98_18590 PF00005 ABC transporter NRK98_18600 PF01032 FecCD transport family NRK98_18605 PF01926 50S ribosome-binding GTPase NRK98_18605 PF10396 GTP-binding protein TrmE N-terminus NRK98_18605 PF12631 MnmE helical domain NRK98_18610 PF14849 YidC periplasmic domain NRK98_18610 PF02096 60Kd inner membrane protein NRK98_18615 PF01809 Putative membrane protein insertion efficiency factor NRK98_18620 PF00825 Ribonuclease P NRK98_18625 PF00468 Ribosomal protein L34 NRK98_18630 PF00005 ABC transporter NRK98_18635 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_18640 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_18645 PF11638 DnaA N-terminal domain NRK98_18645 PF00308 Bacterial dnaA protein NRK98_18645 PF08299 Bacterial dnaA protein helix-turn-helix NRK98_18650 PF02768 DNA polymerase III beta subunit, C-terminal domain NRK98_18650 PF00712 DNA polymerase III beta subunit, N-terminal domain NRK98_18650 PF02767 DNA polymerase III beta subunit, central domain NRK98_18655 PF02463 RecF/RecN/SMC N terminal domain NRK98_18660 PF00204 DNA gyrase B NRK98_18660 PF00986 DNA gyrase B subunit, carboxyl terminus NRK98_18660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_18660 PF01751 Toprim domain NRK98_18660 PF18053 DNA gyrase B subunit insert domain NRK98_18670 PF08279 HTH domain NRK98_18670 PF13280 WYL domain NRK98_18675 PF00011 Hsp20/alpha crystallin family NRK98_18680 PF00011 Hsp20/alpha crystallin family NRK98_18685 PF00155 Aminotransferase class I and II NRK98_18700 PF07690 Major Facilitator Superfamily NRK98_18710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_18710 PF13493 Domain of unknown function (DUF4118) NRK98_18710 PF02702 Osmosensitive K+ channel His kinase sensor domain NRK98_18710 PF13492 GAF domain NRK98_18710 PF00512 His Kinase A (phospho-acceptor) domain NRK98_18715 PF02669 K+-transporting ATPase, c chain NRK98_18725 PF03814 Potassium-transporting ATPase A subunit NRK98_18735 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_18735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK98_18740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_18740 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK98_18740 PF00512 His Kinase A (phospho-acceptor) domain NRK98_18745 PF00873 AcrB/AcrD/AcrF family NRK98_18750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_18755 PF00440 Bacterial regulatory proteins, tetR family NRK98_18790 PF07690 Major Facilitator Superfamily NRK98_18800 PF00672 HAMP domain NRK98_18800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_18800 PF00512 His Kinase A (phospho-acceptor) domain NRK98_18805 PF14532 Sigma-54 interaction domain NRK98_18805 PF02954 Bacterial regulatory protein, Fis family NRK98_18805 PF00072 Response regulator receiver domain NRK98_18815 PF12146 Serine aminopeptidase, S33 NRK98_18820 PF00132 Bacterial transferase hexapeptide (six repeats) NRK98_18825 PF00588 SpoU rRNA Methylase family NRK98_18825 PF12105 SpoU, rRNA methylase, C-terminal NRK98_18830 PF02824 TGS domain NRK98_18830 PF13291 ACT domain NRK98_18830 PF04607 Region found in RelA / SpoT proteins NRK98_18835 PF01192 RNA polymerase Rpb6 NRK98_18840 PF00625 Guanylate kinase NRK98_18845 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRK98_18860 PF00892 EamA-like transporter family NRK98_18880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_18880 PF03466 LysR substrate binding domain NRK98_18885 PF00579 tRNA synthetases class I (W and Y) NRK98_18890 PF00582 Universal stress protein family NRK98_18895 PF07055 Enoyl reductase FAD binding domain NRK98_18895 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRK98_18895 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRK98_18900 PF00990 Diguanylate cyclase, GGDEF domain NRK98_18905 PF00210 Ferritin-like domain NRK98_18915 PF07690 Major Facilitator Superfamily NRK98_18920 PF01810 LysE type translocator NRK98_18925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_18925 PF07694 5TMR of 5TMR-LYT NRK98_18925 PF06580 Histidine kinase NRK98_18930 PF00072 Response regulator receiver domain NRK98_18930 PF04397 LytTr DNA-binding domain NRK98_18935 PF07690 Major Facilitator Superfamily NRK98_18940 PF02222 ATP-grasp domain NRK98_18940 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NRK98_18945 PF00731 AIR carboxylase NRK98_18960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_18960 PF03466 LysR substrate binding domain NRK98_18965 PF07715 TonB-dependent Receptor Plug Domain NRK98_18965 PF00593 TonB dependent receptor NRK98_18970 PF01177 Asp/Glu/Hydantoin racemase NRK98_19005 PF00899 ThiF family NRK98_19010 PF02657 Fe-S metabolism associated domain NRK98_19015 PF00266 Aminotransferase class-V NRK98_19020 PF00580 UvrD/REP helicase N-terminal domain NRK98_19020 PF13361 UvrD-like helicase C-terminal domain NRK98_19025 PF13188 PAS domain NRK98_19025 PF03707 Bacterial signalling protein N terminal repeat NRK98_19025 PF00990 Diguanylate cyclase, GGDEF domain NRK98_19025 PF00563 EAL domain NRK98_19030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRK98_19035 PF08240 Alcohol dehydrogenase GroES-like domain NRK98_19035 PF00107 Zinc-binding dehydrogenase NRK98_19040 PF00155 Aminotransferase class I and II NRK98_19045 PF08360 QacR-like protein, C-terminal region NRK98_19045 PF00440 Bacterial regulatory proteins, tetR family NRK98_19050 PF01370 NAD dependent epimerase/dehydratase family NRK98_19065 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NRK98_19085 PF07715 TonB-dependent Receptor Plug Domain NRK98_19085 PF00593 TonB dependent receptor NRK98_19090 PF01497 Periplasmic binding protein NRK98_19095 PF00005 ABC transporter NRK98_19100 PF01032 FecCD transport family NRK98_19105 PF01032 FecCD transport family NRK98_19110 PF00005 ABC transporter NRK98_19115 PF08021 Siderophore-interacting FAD-binding domain NRK98_19115 PF04954 Siderophore-interacting protein NRK98_19115 PF00005 ABC transporter NRK98_19115 PF00664 ABC transporter transmembrane region NRK98_19130 PF13193 AMP-binding enzyme C-terminal domain NRK98_19130 PF00668 Condensation domain NRK98_19130 PF00550 Phosphopantetheine attachment site NRK98_19130 PF00501 AMP-binding enzyme NRK98_19135 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NRK98_19140 PF00501 AMP-binding enzyme NRK98_19140 PF00550 Phosphopantetheine attachment site NRK98_19140 PF00668 Condensation domain NRK98_19150 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRK98_19155 PF08340 Domain of unknown function (DUF1732) NRK98_19155 PF03755 YicC-like family, N-terminal region NRK98_19160 PF01138 3' exoribonuclease family, domain 1 NRK98_19160 PF03725 3' exoribonuclease family, domain 2 NRK98_19165 PF00156 Phosphoribosyl transferase domain NRK98_19170 PF00403 Heavy-metal-associated domain NRK98_19175 PF09278 MerR, DNA binding NRK98_19175 PF00376 MerR family regulatory protein NRK98_19180 PF01590 GAF domain NRK98_19180 PF00990 Diguanylate cyclase, GGDEF domain NRK98_19180 PF00360 Phytochrome region NRK98_19180 PF00563 EAL domain NRK98_19185 PF06288 Protein of unknown function (DUF1040) NRK98_19190 PF13746 4Fe-4S dicluster domain NRK98_19190 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NRK98_19190 PF12801 4Fe-4S binding domain NRK98_19195 PF01636 Phosphotransferase enzyme family NRK98_19200 PF01323 DSBA-like thioredoxin domain NRK98_19205 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_19210 PF00005 ABC transporter NRK98_19220 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NRK98_19220 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NRK98_19225 PF00857 Isochorismatase family NRK98_19235 PF04463 Protein of unknown function (DUF523) NRK98_19240 PF01553 Acyltransferase NRK98_19245 PF01553 Acyltransferase NRK98_19250 PF13335 Magnesium chelatase, subunit ChlI C-terminal NRK98_19250 PF01078 Magnesium chelatase, subunit ChlI NRK98_19255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK98_19255 PF00205 Thiamine pyrophosphate enzyme, central domain NRK98_19255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRK98_19265 PF01063 Amino-transferase class IV NRK98_19270 PF00920 Dehydratase family NRK98_19275 PF00291 Pyridoxal-phosphate dependent enzyme NRK98_19275 PF00585 C-terminal regulatory domain of Threonine dehydratase NRK98_19280 PF01389 OmpA-like transmembrane domain NRK98_19280 PF00691 OmpA family NRK98_19290 PF00440 Bacterial regulatory proteins, tetR family NRK98_19300 PF00271 Helicase conserved C-terminal domain NRK98_19300 PF00270 DEAD/DEAH box helicase NRK98_19300 PF17764 3′ DNA-binding domain (3′BD) NRK98_19300 PF18074 Primosomal protein N C-terminal domain NRK98_19300 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NRK98_19305 PF01197 Ribosomal protein L31 NRK98_19310 PF11066 Protein of unknown function (DUF2867) NRK98_19310 PF13460 NAD(P)H-binding NRK98_19315 PF00390 Malic enzyme, N-terminal domain NRK98_19315 PF03949 Malic enzyme, NAD binding domain NRK98_19325 PF00512 His Kinase A (phospho-acceptor) domain NRK98_19325 PF00672 HAMP domain NRK98_19325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_19330 PF00486 Transcriptional regulatory protein, C terminal NRK98_19330 PF00072 Response regulator receiver domain NRK98_19335 PF05958 tRNA (Uracil-5-)-methyltransferase NRK98_19370 PF09940 Domain of unknown function (DUF2172) NRK98_19370 PF16221 winged helix-turn-helix NRK98_19370 PF16254 Domain of unknown function (DUF4910) NRK98_19390 PF03102 NeuB family NRK98_19390 PF08666 SAF domain NRK98_19400 PF02348 Cytidylyltransferase NRK98_19420 PF00501 AMP-binding enzyme NRK98_19420 PF13193 AMP-binding enzyme C-terminal domain NRK98_19435 PF00535 Glycosyl transferase family 2 NRK98_19440 PF03275 UDP-galactopyranose mutase NRK98_19450 PF00534 Glycosyl transferases group 1 NRK98_19480 PF00391 PEP-utilising enzyme, mobile domain NRK98_19480 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRK98_19485 PF00117 Glutamine amidotransferase class-I NRK98_19485 PF02540 NAD synthase NRK98_19485 PF00958 GMP synthase C terminal domain NRK98_19490 PF00483 Nucleotidyl transferase NRK98_19495 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRK98_19500 PF02719 Polysaccharide biosynthesis protein NRK98_19505 PF00128 Alpha amylase, catalytic domain NRK98_19505 PF02903 Alpha amylase, N-terminal ig-like domain NRK98_19515 PF03724 META domain NRK98_19520 PF00012 Hsp70 protein NRK98_19525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK98_19525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK98_19530 PF05981 CreA protein NRK98_19545 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRK98_19550 PF00120 Glutamine synthetase, catalytic domain NRK98_19555 PF00202 Aminotransferase class-III NRK98_19560 PF13416 Bacterial extracellular solute-binding protein NRK98_19565 PF13416 Bacterial extracellular solute-binding protein NRK98_19570 PF00005 ABC transporter NRK98_19570 PF08402 TOBE domain NRK98_19575 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_19580 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_19585 PF03473 MOSC domain NRK98_19585 PF03475 3-alpha domain NRK98_19600 PF03061 Thioesterase superfamily NRK98_19605 PF00270 DEAD/DEAH box helicase NRK98_19605 PF09382 RQC domain NRK98_19605 PF00271 Helicase conserved C-terminal domain NRK98_19605 PF00570 HRDC domain NRK98_19605 PF16124 RecQ zinc-binding NRK98_19610 PF00034 Cytochrome c NRK98_19615 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NRK98_19625 PF02592 Putative vitamin uptake transporter NRK98_19630 PF03737 Aldolase/RraA NRK98_19635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_19635 PF00672 HAMP domain NRK98_19640 PF01769 Divalent cation transporter NRK98_19640 PF03448 MgtE intracellular N domain NRK98_19640 PF00571 CBS domain NRK98_19645 PF10414 Sirohaem synthase dimerisation region NRK98_19645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRK98_19645 PF14824 Sirohaem biosynthesis protein central NRK98_19650 PF01226 Formate/nitrite transporter NRK98_19655 PF13806 Rieske-like [2Fe-2S] domain NRK98_19660 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_19660 PF04324 BFD-like [2Fe-2S] binding domain NRK98_19660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRK98_19660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRK98_19660 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRK98_19665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_19665 PF03466 LysR substrate binding domain NRK98_19670 PF07690 Major Facilitator Superfamily NRK98_19680 PF00004 ATPase family associated with various cellular activities (AAA) NRK98_19680 PF07724 AAA domain (Cdc48 subfamily) NRK98_19680 PF10431 C-terminal, D2-small domain, of ClpB protein NRK98_19685 PF00227 Proteasome subunit NRK98_19695 PF00750 tRNA synthetases class I (R) NRK98_19695 PF03485 Arginyl tRNA synthetase N terminal domain NRK98_19695 PF05746 DALR anticodon binding domain NRK98_19705 PF04542 Sigma-70 region 2 NRK98_19705 PF04545 Sigma-70, region 4 NRK98_19710 PF12973 ChrR Cupin-like domain NRK98_19715 PF02673 Bacitracin resistance protein BacA NRK98_19725 PF00248 Aldo/keto reductase family NRK98_19730 PF01263 Aldose 1-epimerase NRK98_19735 PF08544 GHMP kinases C terminal NRK98_19735 PF00288 GHMP kinases N terminal domain NRK98_19735 PF10509 Galactokinase galactose-binding signature NRK98_19740 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NRK98_19740 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NRK98_19745 PF16363 GDP-mannose 4,6 dehydratase NRK98_19750 PF00356 Bacterial regulatory proteins, lacI family NRK98_19755 PF02929 Beta galactosidase small chain NRK98_19755 PF16353 Domain of unknown function(DUF4981) NRK98_19755 PF00703 Glycosyl hydrolases family 2 NRK98_19755 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRK98_19755 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRK98_19760 PF13407 Periplasmic binding protein domain NRK98_19765 PF00005 ABC transporter NRK98_19770 PF02653 Branched-chain amino acid transport system / permease component NRK98_19775 PF02743 Cache domain NRK98_19775 PF00672 HAMP domain NRK98_19775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_19800 PF00696 Amino acid kinase family NRK98_19805 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRK98_19805 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRK98_19810 PF03606 C4-dicarboxylate anaerobic carrier NRK98_19815 PF02863 Arginine repressor, C-terminal domain NRK98_19815 PF01316 Arginine repressor, DNA binding domain NRK98_19820 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NRK98_19820 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NRK98_19825 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRK98_19825 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRK98_19845 PF02666 Phosphatidylserine decarboxylase NRK98_19855 PF02743 Cache domain NRK98_19855 PF00672 HAMP domain NRK98_19855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_19860 PF08212 Lipocalin-like domain NRK98_19865 PF06719 AraC-type transcriptional regulator N-terminus NRK98_19865 PF12833 Helix-turn-helix domain NRK98_19870 PF00465 Iron-containing alcohol dehydrogenase NRK98_19875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRK98_19875 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRK98_19875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRK98_19880 PF02233 NAD(P) transhydrogenase beta subunit NRK98_19890 PF03313 Serine dehydratase alpha chain NRK98_19895 PF00375 Sodium:dicarboxylate symporter family NRK98_19900 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_19900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK98_19905 PF13525 Outer membrane lipoprotein NRK98_19910 PF00849 RNA pseudouridylate synthase NRK98_19910 PF01479 S4 domain NRK98_19915 PF02578 Multi-copper polyphenol oxidoreductase laccase NRK98_19920 PF00004 ATPase family associated with various cellular activities (AAA) NRK98_19920 PF07724 AAA domain (Cdc48 subfamily) NRK98_19920 PF17871 AAA lid domain NRK98_19920 PF10431 C-terminal, D2-small domain, of ClpB protein NRK98_19920 PF02861 Clp amino terminal domain, pathogenicity island component NRK98_19930 PF03590 Aspartate-ammonia ligase NRK98_19935 PF01037 Lrp/AsnC ligand binding domain NRK98_19945 PF10063 Uncharacterized integral membrane protein (DUF2301) NRK98_19950 PF00571 CBS domain NRK98_19950 PF01368 DHH family NRK98_19950 PF02272 DHHA1 domain NRK98_19950 PF01743 Poly A polymerase head domain NRK98_19950 PF12627 Probable RNA and SrmB- binding site of polymerase A NRK98_19970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_19970 PF00512 His Kinase A (phospho-acceptor) domain NRK98_19980 PF00158 Sigma-54 interaction domain NRK98_19980 PF00072 Response regulator receiver domain NRK98_19985 PF06496 Protein of unknown function (DUF1097) NRK98_19990 PF00174 Oxidoreductase molybdopterin binding domain NRK98_19995 PF01794 Ferric reductase like transmembrane component NRK98_20010 PF00486 Transcriptional regulatory protein, C terminal NRK98_20010 PF00072 Response regulator receiver domain NRK98_20015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_20025 PF18364 Molybdopterin oxidoreductase N-terminal domain NRK98_20025 PF01568 Molydopterin dinucleotide binding domain NRK98_20025 PF00384 Molybdopterin oxidoreductase NRK98_20030 PF03264 NapC/NirT cytochrome c family, N-terminal region NRK98_20035 PF01751 Toprim domain NRK98_20035 PF01131 DNA topoisomerase NRK98_20050 PF12833 Helix-turn-helix domain NRK98_20050 PF12852 Cupin NRK98_20055 PF02386 Cation transport protein NRK98_20060 PF02080 TrkA-C domain NRK98_20060 PF02254 TrkA-N domain NRK98_20065 PF01565 FAD binding domain NRK98_20065 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NRK98_20070 PF02237 Biotin protein ligase C terminal domain NRK98_20070 PF08279 HTH domain NRK98_20070 PF03099 Biotin/lipoate A/B protein ligase family NRK98_20075 PF00485 Phosphoribulokinase / Uridine kinase family NRK98_20090 PF00009 Elongation factor Tu GTP binding domain NRK98_20090 PF03143 Elongation factor Tu C-terminal domain NRK98_20090 PF03144 Elongation factor Tu domain 2 NRK98_20100 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NRK98_20105 PF02357 Transcription termination factor nusG NRK98_20105 PF00467 KOW motif NRK98_20110 PF03946 Ribosomal protein L11, N-terminal domain NRK98_20110 PF00298 Ribosomal protein L11, RNA binding domain NRK98_20115 PF00687 Ribosomal protein L1p/L10e family NRK98_20120 PF00466 Ribosomal protein L10 NRK98_20125 PF16320 Ribosomal protein L7/L12 dimerisation domain NRK98_20125 PF00542 Ribosomal protein L7/L12 C-terminal domain NRK98_20130 PF04560 RNA polymerase Rpb2, domain 7 NRK98_20130 PF10385 RNA polymerase beta subunit external 1 domain NRK98_20130 PF04565 RNA polymerase Rpb2, domain 3 NRK98_20130 PF04561 RNA polymerase Rpb2, domain 2 NRK98_20130 PF04563 RNA polymerase beta subunit NRK98_20130 PF00562 RNA polymerase Rpb2, domain 6 NRK98_20135 PF04997 RNA polymerase Rpb1, domain 1 NRK98_20135 PF00623 RNA polymerase Rpb1, domain 2 NRK98_20135 PF04983 RNA polymerase Rpb1, domain 3 NRK98_20135 PF04998 RNA polymerase Rpb1, domain 5 NRK98_20135 PF05000 RNA polymerase Rpb1, domain 4 NRK98_20140 PF08348 YheO-like PAS domain NRK98_20140 PF13309 HTH domain NRK98_20145 PF01042 Endoribonuclease L-PSP NRK98_20150 PF02635 DsrE/DsrF-like family NRK98_20155 PF02635 DsrE/DsrF-like family NRK98_20160 PF04077 DsrH like protein NRK98_20165 PF00164 Ribosomal protein S12/S23 NRK98_20170 PF00177 Ribosomal protein S7p/S5e NRK98_20175 PF03144 Elongation factor Tu domain 2 NRK98_20175 PF00009 Elongation factor Tu GTP binding domain NRK98_20175 PF14492 Elongation Factor G, domain II NRK98_20175 PF00679 Elongation factor G C-terminus NRK98_20175 PF03764 Elongation factor G, domain IV NRK98_20180 PF00009 Elongation factor Tu GTP binding domain NRK98_20180 PF03144 Elongation factor Tu domain 2 NRK98_20180 PF03143 Elongation factor Tu C-terminal domain NRK98_20225 PF00860 Permease family NRK98_20235 PF02734 DAK2 domain NRK98_20240 PF00381 PTS HPr component phosphorylation site NRK98_20240 PF05524 PEP-utilising enzyme, N-terminal NRK98_20240 PF03610 PTS system fructose IIA component NRK98_20240 PF00391 PEP-utilising enzyme, mobile domain NRK98_20245 PF00465 Iron-containing alcohol dehydrogenase NRK98_20250 PF02954 Bacterial regulatory protein, Fis family NRK98_20250 PF00989 PAS fold NRK98_20250 PF00158 Sigma-54 interaction domain NRK98_20255 PF03466 LysR substrate binding domain NRK98_20255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_20260 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRK98_20280 PF01594 AI-2E family transporter NRK98_20285 PF01569 PAP2 superfamily NRK98_20310 PF00583 Acetyltransferase (GNAT) family NRK98_20330 PF00990 Diguanylate cyclase, GGDEF domain NRK98_20340 PF00005 ABC transporter NRK98_20340 PF08402 TOBE domain NRK98_20350 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_20365 PF00392 Bacterial regulatory proteins, gntR family NRK98_20365 PF07702 UTRA domain NRK98_20375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_20375 PF03466 LysR substrate binding domain NRK98_20385 PF02678 Pirin NRK98_20385 PF17954 Quercetinase C-terminal cupin domain NRK98_20390 PF07681 DoxX NRK98_20395 PF17946 RecC C-terminal domain NRK98_20400 PF13361 UvrD-like helicase C-terminal domain NRK98_20400 PF00580 UvrD/REP helicase N-terminal domain NRK98_20400 PF12705 PD-(D/E)XK nuclease superfamily NRK98_20405 PF13538 UvrD-like helicase C-terminal domain NRK98_20410 PF02463 RecF/RecN/SMC N terminal domain NRK98_20415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_20415 PF03466 LysR substrate binding domain NRK98_20425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK98_20435 PF00990 Diguanylate cyclase, GGDEF domain NRK98_20460 PF00486 Transcriptional regulatory protein, C terminal NRK98_20460 PF00072 Response regulator receiver domain NRK98_20465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_20465 PF00672 HAMP domain NRK98_20465 PF00512 His Kinase A (phospho-acceptor) domain NRK98_20470 PF00360 Phytochrome region NRK98_20470 PF00990 Diguanylate cyclase, GGDEF domain NRK98_20470 PF01590 GAF domain NRK98_20470 PF00563 EAL domain NRK98_20475 PF07715 TonB-dependent Receptor Plug Domain NRK98_20475 PF00593 TonB dependent receptor NRK98_20480 PF00313 'Cold-shock' DNA-binding domain NRK98_20490 PF01545 Cation efflux family NRK98_20490 PF16916 Dimerisation domain of Zinc Transporter NRK98_20505 PF00436 Single-strand binding protein family NRK98_20510 PF00196 Bacterial regulatory proteins, luxR family NRK98_20515 PF17755 UvrA DNA-binding domain NRK98_20515 PF17760 UvrA interaction domain NRK98_20515 PF00005 ABC transporter NRK98_20520 PF00990 Diguanylate cyclase, GGDEF domain NRK98_20525 PF03922 OmpW family NRK98_20530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_20530 PF00672 HAMP domain NRK98_20545 PF02219 Methylenetetrahydrofolate reductase NRK98_20555 PF03594 Benzoate membrane transport protein NRK98_20560 PF01381 Helix-turn-helix NRK98_20560 PF07883 Cupin domain NRK98_20590 PF04363 Protein of unknown function (DUF496) NRK98_20600 PF04751 Protein of unknown function (DUF615) NRK98_20605 PF01523 Putative modulator of DNA gyrase NRK98_20610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRK98_20615 PF01722 BolA-like protein NRK98_20625 PF05494 MlaC protein NRK98_20630 PF02470 MlaD protein NRK98_20635 PF02405 Permease MlaE NRK98_20640 PF00005 ABC transporter NRK98_20645 PF01380 SIS domain NRK98_20645 PF00571 CBS domain NRK98_20655 PF06835 Lipopolysaccharide-assembly, LptC-related NRK98_20660 PF03968 OstA-like protein NRK98_20665 PF00005 ABC transporter NRK98_20665 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRK98_20670 PF00309 Sigma-54 factor, Activator interacting domain (AID) NRK98_20670 PF04552 Sigma-54, DNA binding domain NRK98_20670 PF04963 Sigma-54 factor, core binding domain NRK98_20675 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRK98_20680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK98_20685 PF03668 P-loop ATPase protein family NRK98_20690 PF00381 PTS HPr component phosphorylation site NRK98_20695 PF08279 HTH domain NRK98_20695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK98_20695 PF00874 PRD domain NRK98_20695 PF05043 Mga helix-turn-helix domain NRK98_20700 PF07071 KDGP aldolase NRK98_20705 PF03841 L-seryl-tRNA selenium transferase NRK98_20710 PF01979 Amidohydrolase family NRK98_20740 PF13180 PDZ domain NRK98_20745 PF00595 PDZ domain NRK98_20745 PF13180 PDZ domain NRK98_20755 PF03969 AFG1-like ATPase NRK98_20760 PF00572 Ribosomal protein L13 NRK98_20765 PF00380 Ribosomal protein S9/S16 NRK98_20770 PF00355 Rieske [2Fe-2S] domain NRK98_20770 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NRK98_20775 PF00032 Cytochrome b(C-terminal)/b6/petD NRK98_20775 PF00033 Cytochrome b/b6/petB NRK98_20780 PF02167 Cytochrome C1 family NRK98_20785 PF00043 Glutathione S-transferase, C-terminal domain NRK98_20785 PF02798 Glutathione S-transferase, N-terminal domain NRK98_20790 PF04386 Stringent starvation protein B NRK98_20795 PF04972 BON domain NRK98_20800 PF13580 SIS domain NRK98_20805 PF02021 Uncharacterised protein family UPF0102 NRK98_20810 PF04348 LppC putative lipoprotein NRK98_20815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRK98_20825 PF02381 MraZ protein, putative antitoxin-like NRK98_20830 PF01795 MraW methylase family NRK98_20835 PF04999 Cell division protein FtsL NRK98_20840 PF03717 Penicillin-binding Protein dimerisation domain NRK98_20840 PF00905 Penicillin binding protein transpeptidase domain NRK98_20845 PF01225 Mur ligase family, catalytic domain NRK98_20845 PF02875 Mur ligase family, glutamate ligase domain NRK98_20845 PF08245 Mur ligase middle domain NRK98_20850 PF01225 Mur ligase family, catalytic domain NRK98_20850 PF02875 Mur ligase family, glutamate ligase domain NRK98_20850 PF08245 Mur ligase middle domain NRK98_20855 PF00953 Glycosyl transferase family 4 NRK98_20855 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NRK98_20860 PF02875 Mur ligase family, glutamate ligase domain NRK98_20860 PF08245 Mur ligase middle domain NRK98_20865 PF01098 Cell cycle protein NRK98_20870 PF03033 Glycosyltransferase family 28 N-terminal domain NRK98_20870 PF04101 Glycosyltransferase family 28 C-terminal domain NRK98_20875 PF01225 Mur ligase family, catalytic domain NRK98_20875 PF02875 Mur ligase family, glutamate ligase domain NRK98_20875 PF08245 Mur ligase middle domain NRK98_20880 PF03799 Cell division protein FtsQ NRK98_20880 PF08478 POTRA domain, FtsQ-type NRK98_20885 PF02491 SHS2 domain inserted in FTSA NRK98_20890 PF00091 Tubulin/FtsZ family, GTPase domain NRK98_20890 PF12327 FtsZ family, C-terminal domain NRK98_20895 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NRK98_20905 PF02810 SEC-C motif NRK98_20905 PF07517 SecA DEAD-like domain NRK98_20905 PF07516 SecA Wing and Scaffold domain NRK98_20905 PF01043 SecA preprotein cross-linking domain NRK98_20915 PF00293 NUDIX domain NRK98_20920 PF03884 DNA gyrase inhibitor YacG NRK98_20925 PF07072 Cell division protein NRK98_20930 PF01121 Dephospho-CoA kinase NRK98_20935 PF06750 Bacterial Peptidase A24 N-terminal domain NRK98_20935 PF01478 Type IV leader peptidase family NRK98_20940 PF00482 Type II secretion system (T2SS), protein F NRK98_20945 PF00437 Type II/IV secretion system protein NRK98_20945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRK98_20955 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NRK98_20955 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NRK98_20965 PF01510 N-acetylmuramoyl-L-alanine amidase NRK98_20970 PF07729 FCD domain NRK98_20970 PF00392 Bacterial regulatory proteins, gntR family NRK98_20975 PF17831 Pyruvate dehydrogenase E1 component middle domain NRK98_20975 PF00456 Transketolase, thiamine diphosphate binding domain NRK98_20980 PF00364 Biotin-requiring enzyme NRK98_20980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRK98_20980 PF02817 e3 binding domain NRK98_20985 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK98_20985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK98_20995 PF12729 Four helix bundle sensory module for signal transduction NRK98_20995 PF00672 HAMP domain NRK98_20995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_21000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK98_21000 PF00672 HAMP domain NRK98_21000 PF12729 Four helix bundle sensory module for signal transduction NRK98_21005 PF01734 Patatin-like phospholipase NRK98_21010 PF00330 Aconitase family (aconitate hydratase) NRK98_21010 PF06434 Aconitate hydratase 2 N-terminus NRK98_21010 PF11791 Aconitate B N-terminal domain NRK98_21015 PF00563 EAL domain NRK98_21015 PF12792 CSS motif domain associated with EAL NRK98_21020 PF03466 LysR substrate binding domain NRK98_21020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_21025 PF01810 LysE type translocator NRK98_21030 PF04030 D-arabinono-1,4-lactone oxidase NRK98_21030 PF01565 FAD binding domain NRK98_21035 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRK98_21035 PF07683 Cobalamin synthesis protein cobW C-terminal domain NRK98_21040 PF07690 Major Facilitator Superfamily NRK98_21050 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRK98_21055 PF02152 Dihydroneopterin aldolase NRK98_21060 PF02660 Glycerol-3-phosphate acyltransferase NRK98_21095 PF07670 Nucleoside recognition NRK98_21100 PF01584 CheW-like domain NRK98_21100 PF00072 Response regulator receiver domain NRK98_21110 PF08351 Domain of unknown function (DUF1726) NRK98_21110 PF13718 GNAT acetyltransferase 2 NRK98_21110 PF05127 Helicase NRK98_21110 PF17176 tRNA-binding domain NRK98_21125 PF00210 Ferritin-like domain NRK98_21135 PF02142 MGS-like domain NRK98_21150 PF17763 Glutaminase/Asparaginase C-terminal domain NRK98_21150 PF00710 Asparaginase, N-terminal NRK98_21165 PF00356 Bacterial regulatory proteins, lacI family NRK98_21170 PF00367 phosphotransferase system, EIIB NRK98_21170 PF02378 Phosphotransferase system, EIIC NRK98_21175 PF00128 Alpha amylase, catalytic domain NRK98_21175 PF11941 Domain of unknown function (DUF3459) NRK98_21180 PF12464 Maltose acetyltransferase NRK98_21180 PF14602 Hexapeptide repeat of succinyl-transferase NRK98_21200 PF00171 Aldehyde dehydrogenase family NRK98_21205 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_21210 PF00528 Binding-protein-dependent transport system inner membrane component NRK98_21215 PF08402 TOBE domain NRK98_21215 PF00005 ABC transporter NRK98_21220 PF13416 Bacterial extracellular solute-binding protein NRK98_21225 PF03466 LysR substrate binding domain NRK98_21225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_21230 PF03553 Na+/H+ antiporter family NRK98_21260 PF08323 Starch synthase catalytic domain NRK98_21260 PF00534 Glycosyl transferases group 1 NRK98_21265 PF00483 Nucleotidyl transferase NRK98_21270 PF08468 Methyltransferase small domain N-terminal NRK98_21270 PF05175 Methyltransferase small domain NRK98_21275 PF00701 Dihydrodipicolinate synthetase family NRK98_21280 PF01590 GAF domain NRK98_21280 PF00563 EAL domain NRK98_21280 PF00990 Diguanylate cyclase, GGDEF domain NRK98_21280 PF00360 Phytochrome region NRK98_21290 PF13419 Haloacid dehalogenase-like hydrolase NRK98_21295 PF17209 Hfq protein NRK98_21300 PF04403 Paraquat-inducible protein A NRK98_21305 PF02470 MlaD protein NRK98_21310 PF03886 ABC-type transport auxiliary lipoprotein component NRK98_21315 PF00691 OmpA family NRK98_21315 PF01389 OmpA-like transmembrane domain NRK98_21325 PF00657 GDSL-like Lipase/Acylhydrolase NRK98_21330 PF04076 Bacterial OB fold (BOF) protein NRK98_21335 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NRK98_21335 PF01464 Transglycosylase SLT domain NRK98_21340 PF04362 Bacterial Fe(2+) trafficking NRK98_21345 PF00730 HhH-GPD superfamily base excision DNA repair protein NRK98_21345 PF14815 NUDIX domain NRK98_21345 PF00633 Helix-hairpin-helix motif NRK98_21345 PF10576 Iron-sulfur binding domain of endonuclease III NRK98_21350 PF16537 Type II secretion system protein B NRK98_21355 PF01471 Putative peptidoglycan binding domain NRK98_21355 PF13401 AAA domain NRK98_21360 PF01966 HD domain NRK98_21360 PF01743 Poly A polymerase head domain NRK98_21360 PF12627 Probable RNA and SrmB- binding site of polymerase A NRK98_21375 PF04172 LrgB-like family NRK98_21380 PF03788 LrgA family NRK98_21385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_21385 PF03466 LysR substrate binding domain NRK98_21395 PF00392 Bacterial regulatory proteins, gntR family NRK98_21395 PF00155 Aminotransferase class I and II NRK98_21415 PF04073 Aminoacyl-tRNA editing domain NRK98_21420 PF01384 Phosphate transporter family NRK98_21425 PF01865 Protein of unknown function DUF47 NRK98_21440 PF03279 Bacterial lipid A biosynthesis acyltransferase NRK98_21445 PF00294 pfkB family carbohydrate kinase NRK98_21445 PF01467 Cytidylyltransferase-like NRK98_21450 PF02321 Outer membrane efflux protein NRK98_21455 PF00293 NUDIX domain NRK98_21460 PF06853 Protein of unknown function (DUF1249) NRK98_21465 PF00149 Calcineurin-like phosphoesterase NRK98_21470 PF05728 Uncharacterised protein family (UPF0227) NRK98_21475 PF00293 NUDIX domain NRK98_21485 PF07869 Protein of unknown function (DUF1656) NRK98_21490 PF00529 HlyD membrane-fusion protein of T1SS NRK98_21490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK98_21495 PF04632 Fusaric acid resistance protein family NRK98_21500 PF00204 DNA gyrase B NRK98_21500 PF00986 DNA gyrase B subunit, carboxyl terminus NRK98_21500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK98_21500 PF01751 Toprim domain NRK98_21505 PF00521 DNA gyrase/topoisomerase IV, subunit A NRK98_21505 PF03989 DNA gyrase C-terminal domain, beta-propeller NRK98_21515 PF03466 LysR substrate binding domain NRK98_21515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_21520 PF07690 Major Facilitator Superfamily NRK98_21525 PF02600 Disulfide bond formation protein DsbB NRK98_21565 PF00684 DnaJ central domain NRK98_21565 PF01556 DnaJ C terminal domain NRK98_21565 PF00226 DnaJ domain NRK98_21575 PF00578 AhpC/TSA family NRK98_21595 PF01553 Acyltransferase NRK98_21600 PF04012 PspA/IM30 family NRK98_21615 PF01541 GIY-YIG catalytic domain NRK98_21625 PF00892 EamA-like transporter family NRK98_21630 PF03167 Uracil DNA glycosylase superfamily NRK98_21635 PF00892 EamA-like transporter family NRK98_21640 PF03466 LysR substrate binding domain NRK98_21640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK98_21645 PF00950 ABC 3 transport family NRK98_21650 PF00005 ABC transporter NRK98_21655 PF01297 Zinc-uptake complex component A periplasmic NRK98_21675 PF08525 Opacity-associated protein A N-terminal motif NRK98_21675 PF01476 LysM domain NRK98_21675 PF01551 Peptidase family M23 NRK98_21680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK98_21685 PF04222 Protein of unknown function (DUF416) NRK98_21700 PF02028 BCCT, betaine/carnitine/choline family transporter NRK98_21705 PF00488 MutS domain V NRK98_21705 PF01624 MutS domain I NRK98_21705 PF05188 MutS domain II NRK98_21705 PF05192 MutS domain III NRK98_21705 PF05190 MutS family domain IV NRK98_21710 PF02464 Competence-damaged protein NRK98_21715 PF00154 recA bacterial DNA recombination protein NRK98_21720 PF02631 RecX family NRK98_21725 PF02272 DHHA1 domain NRK98_21725 PF01411 tRNA synthetases class II (A) NRK98_21725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRK98_21730 PF00696 Amino acid kinase family NRK98_21730 PF01842 ACT domain NRK98_21730 PF13840 ACT domain NRK98_21735 PF02599 Global regulator protein family NRK98_21770 PF00768 D-alanyl-D-alanine carboxypeptidase NRK98_21775 PF09335 SNARE associated Golgi protein NRK98_21780 PF01595 Cyclin M transmembrane N-terminal domain NRK98_21780 PF00571 CBS domain NRK98_21780 PF03471 Transporter associated domain NRK98_21785 PF08264 Anticodon-binding domain of tRNA NRK98_21785 PF00133 tRNA synthetases class I (I, L, M and V) NRK98_21785 PF10458 Valyl tRNA synthetase tRNA binding arm NRK98_21790 PF04364 DNA polymerase III chi subunit, HolC NRK98_21795 PF00883 Cytosol aminopeptidase family, catalytic domain NRK98_21795 PF02789 Cytosol aminopeptidase family, N-terminal domain NRK98_21800 PF03739 Lipopolysaccharide export system permease LptF/LptG NRK98_21805 PF03739 Lipopolysaccharide export system permease LptF/LptG