locus-tag class description NRK99_00005 PF00308 Bacterial dnaA protein NRK99_00005 PF08299 Bacterial dnaA protein helix-turn-helix NRK99_00005 PF11638 DnaA N-terminal domain NRK99_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NRK99_00010 PF02767 DNA polymerase III beta subunit, central domain NRK99_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NRK99_00015 PF02463 RecF/RecN/SMC N terminal domain NRK99_00020 PF00204 DNA gyrase B NRK99_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NRK99_00020 PF18053 DNA gyrase B subunit insert domain NRK99_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_00020 PF01751 Toprim domain NRK99_00030 PF08279 HTH domain NRK99_00030 PF13280 WYL domain NRK99_00035 PF00011 Hsp20/alpha crystallin family NRK99_00040 PF00011 Hsp20/alpha crystallin family NRK99_00045 PF00155 Aminotransferase class I and II NRK99_00060 PF07690 Major Facilitator Superfamily NRK99_00065 PF00072 Response regulator receiver domain NRK99_00065 PF00486 Transcriptional regulatory protein, C terminal NRK99_00070 PF13493 Domain of unknown function (DUF4118) NRK99_00070 PF13492 GAF domain NRK99_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_00070 PF00512 His Kinase A (phospho-acceptor) domain NRK99_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain NRK99_00075 PF02669 K+-transporting ATPase, c chain NRK99_00085 PF03814 Potassium-transporting ATPase A subunit NRK99_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK99_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_00100 PF00512 His Kinase A (phospho-acceptor) domain NRK99_00100 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_00105 PF00873 AcrB/AcrD/AcrF family NRK99_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_00115 PF00440 Bacterial regulatory proteins, tetR family NRK99_00150 PF07690 Major Facilitator Superfamily NRK99_00160 PF00672 HAMP domain NRK99_00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_00160 PF00512 His Kinase A (phospho-acceptor) domain NRK99_00165 PF02954 Bacterial regulatory protein, Fis family NRK99_00165 PF00072 Response regulator receiver domain NRK99_00165 PF14532 Sigma-54 interaction domain NRK99_00175 PF12146 Serine aminopeptidase, S33 NRK99_00180 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_00185 PF00588 SpoU rRNA Methylase family NRK99_00185 PF12105 SpoU, rRNA methylase, C-terminal NRK99_00190 PF04607 Region found in RelA / SpoT proteins NRK99_00190 PF02824 TGS domain NRK99_00190 PF13291 ACT domain NRK99_00195 PF01192 RNA polymerase Rpb6 NRK99_00200 PF00625 Guanylate kinase NRK99_00205 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRK99_00220 PF00892 EamA-like transporter family NRK99_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_00240 PF03466 LysR substrate binding domain NRK99_00245 PF00579 tRNA synthetases class I (W and Y) NRK99_00250 PF00582 Universal stress protein family NRK99_00255 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRK99_00255 PF07055 Enoyl reductase FAD binding domain NRK99_00255 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRK99_00260 PF00990 Diguanylate cyclase, GGDEF domain NRK99_00265 PF00210 Ferritin-like domain NRK99_00275 PF07690 Major Facilitator Superfamily NRK99_00280 PF01810 LysE type translocator NRK99_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_00285 PF06580 Histidine kinase NRK99_00285 PF07694 5TMR of 5TMR-LYT NRK99_00290 PF04397 LytTr DNA-binding domain NRK99_00290 PF00072 Response regulator receiver domain NRK99_00295 PF07690 Major Facilitator Superfamily NRK99_00300 PF02222 ATP-grasp domain NRK99_00300 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NRK99_00305 PF00731 AIR carboxylase NRK99_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_00320 PF03466 LysR substrate binding domain NRK99_00325 PF00593 TonB dependent receptor NRK99_00325 PF07715 TonB-dependent Receptor Plug Domain NRK99_00330 PF01177 Asp/Glu/Hydantoin racemase NRK99_00360 PF00583 Acetyltransferase (GNAT) family NRK99_00360 PF13380 CoA binding domain NRK99_00360 PF13607 Succinyl-CoA ligase like flavodoxin domain NRK99_00375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_00375 PF03466 LysR substrate binding domain NRK99_00380 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NRK99_00380 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NRK99_00385 PF00342 Phosphoglucose isomerase NRK99_00395 PF00924 Mechanosensitive ion channel NRK99_00395 PF05552 Conserved TM helix NRK99_00400 PF00440 Bacterial regulatory proteins, tetR family NRK99_00405 PF00692 dUTPase NRK99_00410 PF04127 DNA / pantothenate metabolism flavoprotein NRK99_00410 PF02441 Flavoprotein NRK99_00415 PF04002 RadC-like JAB domain NRK99_00420 PF00830 Ribosomal L28 family NRK99_00425 PF00471 Ribosomal protein L33 NRK99_00435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NRK99_00435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NRK99_00435 PF06827 Zinc finger found in FPG and IleRS NRK99_00440 PF04393 Protein of unknown function (DUF535) NRK99_00445 PF01467 Cytidylyltransferase-like NRK99_00450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRK99_00455 PF00535 Glycosyl transferase family 2 NRK99_00460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRK99_00465 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NRK99_00470 PF03611 PTS system sugar-specific permease component NRK99_00480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK99_00485 PF00356 Bacterial regulatory proteins, lacI family NRK99_00485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK99_00490 PF08240 Alcohol dehydrogenase GroES-like domain NRK99_00490 PF00107 Zinc-binding dehydrogenase NRK99_00510 PF03748 Flagellar basal body-associated protein FliL NRK99_00515 PF04345 Chorismate lyase NRK99_00520 PF01040 UbiA prenyltransferase family NRK99_00525 PF01553 Acyltransferase NRK99_00530 PF00717 Peptidase S24-like NRK99_00530 PF01726 LexA DNA binding domain NRK99_00540 PF02630 SCO1/SenC NRK99_00545 PF01554 MatE NRK99_00550 PF00588 SpoU rRNA Methylase family NRK99_00555 PF16527 Two-component sensor protein CpxA, periplasmic domain NRK99_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_00555 PF00512 His Kinase A (phospho-acceptor) domain NRK99_00555 PF00672 HAMP domain NRK99_00560 PF00486 Transcriptional regulatory protein, C terminal NRK99_00560 PF00072 Response regulator receiver domain NRK99_00565 PF16916 Dimerisation domain of Zinc Transporter NRK99_00565 PF01545 Cation efflux family NRK99_00570 PF06426 Serine acetyltransferase, N-terminal NRK99_00570 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_00580 PF06005 Cell division protein ZapB NRK99_00590 PF00476 DNA polymerase family A NRK99_00590 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRK99_00590 PF01367 5'-3' exonuclease, C-terminal SAM fold NRK99_00590 PF01612 3'-5' exonuclease NRK99_00595 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_00630 PF00356 Bacterial regulatory proteins, lacI family NRK99_00635 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRK99_00635 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRK99_00635 PF00703 Glycosyl hydrolases family 2 NRK99_00635 PF02929 Beta galactosidase small chain NRK99_00635 PF16353 Domain of unknown function(DUF4981) NRK99_00640 PF04074 YhcH/YjgK/YiaL NRK99_00645 PF13520 Amino acid permease NRK99_00650 PF01588 Putative tRNA binding domain NRK99_00655 PF13520 Amino acid permease NRK99_00660 PF13593 SBF-like CPA transporter family (DUF4137) NRK99_00665 PF03781 Sulfatase-modifying factor enzyme 1 NRK99_00665 PF12867 DinB superfamily NRK99_00675 PF00756 Putative esterase NRK99_00680 PF00107 Zinc-binding dehydrogenase NRK99_00680 PF08240 Alcohol dehydrogenase GroES-like domain NRK99_00685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_00685 PF03466 LysR substrate binding domain NRK99_00690 PF02653 Branched-chain amino acid transport system / permease component NRK99_00695 PF02653 Branched-chain amino acid transport system / permease component NRK99_00700 PF00005 ABC transporter NRK99_00705 PF02608 ABC transporter substrate-binding protein PnrA-like NRK99_00715 PF00580 UvrD/REP helicase N-terminal domain NRK99_00715 PF13361 UvrD-like helicase C-terminal domain NRK99_00720 PF00580 UvrD/REP helicase N-terminal domain NRK99_00720 PF13361 UvrD-like helicase C-terminal domain NRK99_00725 PF00145 C-5 cytosine-specific DNA methylase NRK99_00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_00745 PF03466 LysR substrate binding domain NRK99_00755 PF14001 YdfZ protein NRK99_00790 PF06206 CpeT/CpcT family (DUF1001) NRK99_00800 PF01810 LysE type translocator NRK99_00810 PF04143 Sulphur transport NRK99_00815 PF00690 Cation transporter/ATPase, N-terminus NRK99_00815 PF00689 Cation transporting ATPase, C-terminus NRK99_00820 PF01810 LysE type translocator NRK99_00825 PF12833 Helix-turn-helix domain NRK99_00830 PF00892 EamA-like transporter family NRK99_00840 PF00171 Aldehyde dehydrogenase family NRK99_00845 PF07883 Cupin domain NRK99_00845 PF01381 Helix-turn-helix NRK99_00850 PF00202 Aminotransferase class-III NRK99_00855 PF00171 Aldehyde dehydrogenase family NRK99_00860 PF00117 Glutamine amidotransferase class-I NRK99_00860 PF00958 GMP synthase C terminal domain NRK99_00860 PF02540 NAD synthase NRK99_00865 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRK99_00865 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRK99_00870 PF00294 pfkB family carbohydrate kinase NRK99_00875 PF02082 Transcriptional regulator NRK99_00890 PF02646 RmuC family NRK99_00895 PF02386 Cation transport protein NRK99_00900 PF02254 TrkA-N domain NRK99_00900 PF02080 TrkA-C domain NRK99_00905 PF01029 NusB family NRK99_00905 PF01189 16S rRNA methyltransferase RsmB/F NRK99_00910 PF00551 Formyl transferase NRK99_00910 PF02911 Formyl transferase, C-terminal domain NRK99_00915 PF01327 Polypeptide deformylase NRK99_00925 PF17782 DprA winged helix domain NRK99_00925 PF02481 DNA recombination-mediator protein A NRK99_00930 PF04361 Protein of unknown function (DUF494) NRK99_00935 PF01396 Topoisomerase DNA binding C4 zinc finger NRK99_00940 PF00731 AIR carboxylase NRK99_00945 PF01300 Telomere recombination NRK99_00950 PF01218 Coproporphyrinogen III oxidase NRK99_00955 PF08501 Shikimate dehydrogenase substrate binding domain NRK99_00955 PF01488 Shikimate / quinate 5-dehydrogenase NRK99_00955 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NRK99_00960 PF07369 Protein of unknown function (DUF1488) NRK99_00965 PF01926 50S ribosome-binding GTPase NRK99_00970 PF00034 Cytochrome c NRK99_00975 PF04220 Der GTPase activator (YihI) NRK99_00980 PF10675 Protein of unknown function (DUF2489) NRK99_00985 PF04055 Radical SAM superfamily NRK99_00985 PF06969 HemN C-terminal domain NRK99_00990 PF00962 Adenosine/AMP deaminase NRK99_00995 PF00158 Sigma-54 interaction domain NRK99_00995 PF00072 Response regulator receiver domain NRK99_00995 PF02954 Bacterial regulatory protein, Fis family NRK99_01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_01000 PF00512 His Kinase A (phospho-acceptor) domain NRK99_01000 PF00989 PAS fold NRK99_01010 PF00120 Glutamine synthetase, catalytic domain NRK99_01010 PF03951 Glutamine synthetase, beta-Grasp domain NRK99_01015 PF03144 Elongation factor Tu domain 2 NRK99_01015 PF00009 Elongation factor Tu GTP binding domain NRK99_01015 PF00679 Elongation factor G C-terminus NRK99_01020 PF03631 Virulence factor BrkB NRK99_01030 PF02580 D-Tyr-tRNA(Tyr) deacylase NRK99_01040 PF09500 Putative thioesterase (yiiD_Cterm) NRK99_01040 PF00583 Acetyltransferase (GNAT) family NRK99_01050 PF00271 Helicase conserved C-terminal domain NRK99_01050 PF00270 DEAD/DEAH box helicase NRK99_01050 PF17191 RecG wedge domain NRK99_01055 PF13091 PLD-like domain NRK99_01060 PF02447 GntP family permease NRK99_01065 PF01202 Shikimate kinase NRK99_01070 PF00920 Dehydratase family NRK99_01075 PF01081 KDPG and KHG aldolase NRK99_01080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK99_01080 PF00356 Bacterial regulatory proteins, lacI family NRK99_01090 PF01551 Peptidase family M23 NRK99_01095 PF01676 Metalloenzyme superfamily NRK99_01095 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NRK99_01100 PF00581 Rhodanese-like domain NRK99_01105 PF02556 Preprotein translocase subunit SecB NRK99_01110 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NRK99_01110 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NRK99_01115 PF01521 Iron-sulphur cluster biosynthesis NRK99_01115 PF01106 NifU-like domain NRK99_01120 PF00156 Phosphoribosyl transferase domain NRK99_01125 PF00561 alpha/beta hydrolase fold NRK99_01145 PF17674 HHH domain NRK99_01145 PF00575 S1 RNA binding domain NRK99_01145 PF09371 Tex-like protein N-terminal domain NRK99_01145 PF16921 Tex protein YqgF-like domain NRK99_01150 PF03449 Transcription elongation factor, N-terminal NRK99_01150 PF01272 Transcription elongation factor, GreA/GreB, C-term NRK99_01155 PF00486 Transcriptional regulatory protein, C terminal NRK99_01155 PF00072 Response regulator receiver domain NRK99_01160 PF00672 HAMP domain NRK99_01160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_01160 PF00512 His Kinase A (phospho-acceptor) domain NRK99_01170 PF00338 Ribosomal protein S10p/S20e NRK99_01175 PF00297 Ribosomal protein L3 NRK99_01180 PF00573 Ribosomal protein L4/L1 family NRK99_01185 PF00276 Ribosomal protein L23 NRK99_01190 PF03947 Ribosomal Proteins L2, C-terminal domain NRK99_01190 PF00181 Ribosomal Proteins L2, RNA binding domain NRK99_01195 PF00203 Ribosomal protein S19 NRK99_01200 PF00237 Ribosomal protein L22p/L17e NRK99_01205 PF00189 Ribosomal protein S3, C-terminal domain NRK99_01205 PF07650 KH domain NRK99_01210 PF00252 Ribosomal protein L16p/L10e NRK99_01215 PF00831 Ribosomal L29 protein NRK99_01220 PF00366 Ribosomal protein S17 NRK99_01225 PF00238 Ribosomal protein L14p/L23e NRK99_01230 PF00467 KOW motif NRK99_01230 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NRK99_01235 PF00281 Ribosomal protein L5 NRK99_01235 PF00673 ribosomal L5P family C-terminus NRK99_01240 PF00253 Ribosomal protein S14p/S29e NRK99_01245 PF00410 Ribosomal protein S8 NRK99_01250 PF00347 Ribosomal protein L6 NRK99_01255 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NRK99_01260 PF00333 Ribosomal protein S5, N-terminal domain NRK99_01260 PF03719 Ribosomal protein S5, C-terminal domain NRK99_01265 PF00327 Ribosomal protein L30p/L7e NRK99_01270 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NRK99_01275 PF00344 SecY translocase NRK99_01280 PF00444 Ribosomal protein L36 NRK99_01285 PF00416 Ribosomal protein S13/S18 NRK99_01290 PF00411 Ribosomal protein S11 NRK99_01295 PF01479 S4 domain NRK99_01295 PF00163 Ribosomal protein S4/S9 N-terminal domain NRK99_01300 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NRK99_01300 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NRK99_01300 PF01000 RNA polymerase Rpb3/RpoA insert domain NRK99_01305 PF01196 Ribosomal protein L17 NRK99_01350 PF00999 Sodium/hydrogen exchanger family NRK99_01350 PF02254 TrkA-N domain NRK99_01355 PF02525 Flavodoxin-like fold NRK99_01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_01360 PF03466 LysR substrate binding domain NRK99_01365 PF00106 short chain dehydrogenase NRK99_01380 PF00326 Prolyl oligopeptidase family NRK99_01380 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRK99_01385 PF16868 NMT1-like family NRK99_01400 PF07947 YhhN family NRK99_01405 PF07690 Major Facilitator Superfamily NRK99_01410 PF13533 Biotin-lipoyl like NRK99_01415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_01415 PF03466 LysR substrate binding domain NRK99_01425 PF00375 Sodium:dicarboxylate symporter family NRK99_01430 PF10678 Protein of unknown function (DUF2492) NRK99_01435 PF01914 MarC family integral membrane protein NRK99_01440 PF03466 LysR substrate binding domain NRK99_01440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_01445 PF02416 mttA/Hcf106 family NRK99_01455 PF01464 Transglycosylase SLT domain NRK99_01465 PF13091 PLD-like domain NRK99_01475 PF00440 Bacterial regulatory proteins, tetR family NRK99_01495 PF00448 SRP54-type protein, GTPase domain NRK99_01495 PF02881 SRP54-type protein, helical bundle domain NRK99_01500 PF00005 ABC transporter NRK99_01505 PF18075 FtsX extracellular domain NRK99_01510 PF04542 Sigma-70 region 2 NRK99_01510 PF00140 Sigma-70 factor, region 1.2 NRK99_01510 PF04545 Sigma-70, region 4 NRK99_01515 PF00484 Carbonic anhydrase NRK99_01520 PF07702 UTRA domain NRK99_01520 PF00392 Bacterial regulatory proteins, gntR family NRK99_01525 PF01979 Amidohydrolase family NRK99_01530 PF00491 Arginase family NRK99_01535 PF01175 Urocanase Rossmann-like domain NRK99_01535 PF17392 Urocanase C-terminal domain NRK99_01535 PF17391 Urocanase N-terminal domain NRK99_01540 PF00221 Aromatic amino acid lyase NRK99_01545 PF01699 Sodium/calcium exchanger protein NRK99_01550 PF00563 EAL domain NRK99_01550 PF12792 CSS motif domain associated with EAL NRK99_01555 PF00563 EAL domain NRK99_01555 PF00990 Diguanylate cyclase, GGDEF domain NRK99_01555 PF17157 Gammaproteobacterial periplasmic sensor domain NRK99_01585 PF00263 Bacterial type II and III secretion system protein NRK99_01585 PF03958 Bacterial type II/III secretion system short domain NRK99_01600 PF00437 Type II/IV secretion system protein NRK99_01600 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRK99_01605 PF00482 Type II secretion system (T2SS), protein F NRK99_01615 PF07963 Prokaryotic N-terminal methylation motif NRK99_01625 PF07963 Prokaryotic N-terminal methylation motif NRK99_01625 PF00114 Pilin (bacterial filament) NRK99_01655 PF04085 rod shape-determining protein MreC NRK99_01660 PF04093 rod shape-determining protein MreD NRK99_01665 PF02545 Maf-like protein NRK99_01670 PF10150 Ribonuclease E/G family NRK99_01670 PF00575 S1 RNA binding domain NRK99_01675 PF13116 Protein of unknown function NRK99_01675 PF13502 AsmA-like C-terminal region NRK99_01685 PF00795 Carbon-nitrogen hydrolase NRK99_01690 PF01523 Putative modulator of DNA gyrase NRK99_01700 PF01914 MarC family integral membrane protein NRK99_01705 PF07690 Major Facilitator Superfamily NRK99_01715 PF00072 Response regulator receiver domain NRK99_01720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK99_01720 PF00072 Response regulator receiver domain NRK99_01720 PF00672 HAMP domain NRK99_01720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_01720 PF00512 His Kinase A (phospho-acceptor) domain NRK99_01720 PF01627 Hpt domain NRK99_01730 PF08678 Rsbr N terminal NRK99_01730 PF01740 STAS domain NRK99_01735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_01735 PF08447 PAS fold NRK99_01735 PF13426 PAS domain NRK99_01750 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) NRK99_01755 PF04228 Putative neutral zinc metallopeptidase NRK99_01765 PF08668 HDOD domain NRK99_01780 PF00999 Sodium/hydrogen exchanger family NRK99_01785 PF02607 B12 binding domain NRK99_01785 PF02310 B12 binding domain NRK99_01785 PF00809 Pterin binding enzyme NRK99_01785 PF02574 Homocysteine S-methyltransferase NRK99_01785 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRK99_01795 PF08443 RimK-like ATP-grasp domain NRK99_01795 PF18030 RimK PreATP-grasp domain NRK99_01800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_01805 PF00072 Response regulator receiver domain NRK99_01805 PF00486 Transcriptional regulatory protein, C terminal NRK99_01820 PF01117 Aerolysin toxin NRK99_01820 PF03440 Aerolysin/Pertussis toxin (APT) domain NRK99_01825 PF13667 ThiC-associated domain NRK99_01825 PF01964 Radical SAM ThiC family NRK99_01830 PF02581 Thiamine monophosphate synthase NRK99_01835 PF00899 ThiF family NRK99_01845 PF05690 Thiazole biosynthesis protein ThiG NRK99_01850 PF06968 Biotin and Thiamin Synthesis associated domain NRK99_01850 PF04055 Radical SAM superfamily NRK99_01865 PF13302 Acetyltransferase (GNAT) domain NRK99_01875 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_01880 PF13036 Peptidoglycan-synthase activator LpoB NRK99_01895 PF17151 Periplasmic sensor domain NRK99_01895 PF00990 Diguanylate cyclase, GGDEF domain NRK99_01905 PF06055 Exopolysaccharide synthesis, ExoD NRK99_01920 PF08803 Putative mono-oxygenase ydhR NRK99_01925 PF01638 HxlR-like helix-turn-helix NRK99_01930 PF00583 Acetyltransferase (GNAT) family NRK99_01930 PF13508 Acetyltransferase (GNAT) domain NRK99_01950 PF07715 TonB-dependent Receptor Plug Domain NRK99_01950 PF00593 TonB dependent receptor NRK99_01965 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NRK99_01970 PF03692 Putative zinc- or iron-chelating domain NRK99_01980 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NRK99_01985 PF02602 Uroporphyrinogen-III synthase HemD NRK99_01990 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NRK99_01990 PF03900 Porphobilinogen deaminase, C-terminal domain NRK99_01995 PF12633 Adenylate cyclase NT domain NRK99_01995 PF01295 Adenylate cyclase, class-I NRK99_02000 PF02230 Phospholipase/Carboxylesterase NRK99_02005 PF01491 Frataxin-like domain NRK99_02015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRK99_02015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRK99_02020 PF01678 Diaminopimelate epimerase NRK99_02030 PF02899 Phage integrase, N-terminal SAM-like domain NRK99_02030 PF00589 Phage integrase family NRK99_02035 PF13419 Haloacid dehalogenase-like hydrolase NRK99_02045 PF00027 Cyclic nucleotide-binding domain NRK99_02045 PF13545 Crp-like helix-turn-helix domain NRK99_02055 PF07722 Peptidase C26 NRK99_02075 PF00005 ABC transporter NRK99_02085 PF02464 Competence-damaged protein NRK99_02085 PF00994 Probable molybdopterin binding domain NRK99_02090 PF00013 KH domain NRK99_02090 PF12072 Domain of unknown function (DUF3552) NRK99_02090 PF01966 HD domain NRK99_02095 PF04204 Homoserine O-succinyltransferase NRK99_02105 PF01037 Lrp/AsnC ligand binding domain NRK99_02110 PF00884 Sulfatase NRK99_02125 PF16657 Maltogenic Amylase, C-terminal domain NRK99_02125 PF02903 Alpha amylase, N-terminal ig-like domain NRK99_02125 PF00128 Alpha amylase, catalytic domain NRK99_02130 PF02308 MgtC family NRK99_02150 PF00106 short chain dehydrogenase NRK99_02155 PF03577 Peptidase family C69 NRK99_02165 PF00465 Iron-containing alcohol dehydrogenase NRK99_02175 PF01053 Cys/Met metabolism PLP-dependent enzyme NRK99_02185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_02185 PF12793 Sugar transport-related sRNA regulator N-term NRK99_02200 PF03280 Proteobacterial lipase chaperone protein NRK99_02205 PF00561 alpha/beta hydrolase fold NRK99_02215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRK99_02215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRK99_02220 PF02698 DUF218 domain NRK99_02225 PF01752 Collagenase NRK99_02225 PF08453 Peptidase family M9 N-terminal NRK99_02235 PF00419 Fimbrial protein NRK99_02245 PF13953 PapC C-terminal domain NRK99_02245 PF00577 Outer membrane usher protein NRK99_02245 PF13954 PapC N-terminal domain NRK99_02250 PF02753 Pili assembly chaperone PapD, C-terminal domain NRK99_02250 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NRK99_02255 PF00419 Fimbrial protein NRK99_02260 PF00419 Fimbrial protein NRK99_02265 PF00072 Response regulator receiver domain NRK99_02265 PF00486 Transcriptional regulatory protein, C terminal NRK99_02270 PF00501 AMP-binding enzyme NRK99_02275 PF13378 Enolase C-terminal domain-like NRK99_02280 PF00378 Enoyl-CoA hydratase/isomerase NRK99_02285 PF12697 Alpha/beta hydrolase family NRK99_02290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK99_02290 PF16582 Middle domain of thiamine pyrophosphate NRK99_02290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRK99_02295 PF00425 chorismate binding enzyme NRK99_02300 PF01040 UbiA prenyltransferase family NRK99_02330 PF03880 DbpA RNA binding domain NRK99_02330 PF00270 DEAD/DEAH box helicase NRK99_02330 PF00271 Helicase conserved C-terminal domain NRK99_02335 PF07670 Nucleoside recognition NRK99_02335 PF07662 Na+ dependent nucleoside transporter C-terminus NRK99_02335 PF01773 Na+ dependent nucleoside transporter N-terminus NRK99_02340 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRK99_02355 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NRK99_02360 PF01544 CorA-like Mg2+ transporter protein NRK99_02380 PF02080 TrkA-C domain NRK99_02380 PF00999 Sodium/hydrogen exchanger family NRK99_02380 PF03471 Transporter associated domain NRK99_02385 PF05068 Mannitol repressor NRK99_02390 PF01232 Mannitol dehydrogenase Rossmann domain NRK99_02390 PF08125 Mannitol dehydrogenase C-terminal domain NRK99_02395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK99_02395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRK99_02395 PF02378 Phosphotransferase system, EIIC NRK99_02405 PF00440 Bacterial regulatory proteins, tetR family NRK99_02410 PF08206 Ribonuclease B OB domain NRK99_02410 PF00773 RNB domain NRK99_02410 PF17876 Cold shock domain NRK99_02415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_02415 PF03466 LysR substrate binding domain NRK99_02420 PF00765 Autoinducer synthase NRK99_02425 PF03472 Autoinducer binding domain NRK99_02425 PF00196 Bacterial regulatory proteins, luxR family NRK99_02430 PF01810 LysE type translocator NRK99_02435 PF00149 Calcineurin-like phosphoesterase NRK99_02435 PF02872 5'-nucleotidase, C-terminal domain NRK99_02440 PF05433 Glycine zipper 2TM domain NRK99_02445 PF00583 Acetyltransferase (GNAT) family NRK99_02455 PF01321 Creatinase/Prolidase N-terminal domain NRK99_02455 PF00557 Metallopeptidase family M24 NRK99_02460 PF00392 Bacterial regulatory proteins, gntR family NRK99_02465 PF01293 Phosphoenolpyruvate carboxykinase NRK99_02470 PF01430 Hsp33 protein NRK99_02475 PF01479 S4 domain NRK99_02480 PF11356 Type II secretion system protein C NRK99_02485 PF00263 Bacterial type II and III secretion system protein NRK99_02485 PF03958 Bacterial type II/III secretion system short domain NRK99_02490 PF00437 Type II/IV secretion system protein NRK99_02495 PF00482 Type II secretion system (T2SS), protein F NRK99_02500 PF07963 Prokaryotic N-terminal methylation motif NRK99_02500 PF08334 Type II secretion system (T2SS), protein G NRK99_02505 PF07963 Prokaryotic N-terminal methylation motif NRK99_02505 PF12019 Type II transport protein GspH NRK99_02510 PF02501 Type II secretion system (T2SS), protein I NRK99_02510 PF07963 Prokaryotic N-terminal methylation motif NRK99_02515 PF07963 Prokaryotic N-terminal methylation motif NRK99_02515 PF11612 Type II secretion system (T2SS), protein J NRK99_02520 PF03934 Type II secretion system (T2SS), protein K NRK99_02525 PF12693 GspL periplasmic domain NRK99_02525 PF05134 Type II secretion system (T2SS), protein L NRK99_02530 PF04612 Type II secretion system (T2SS), protein M NRK99_02535 PF01203 Type II secretion system (T2SS), protein N NRK99_02540 PF00196 Bacterial regulatory proteins, luxR family NRK99_02545 PF01479 S4 domain NRK99_02545 PF00579 tRNA synthetases class I (W and Y) NRK99_02550 PF03466 LysR substrate binding domain NRK99_02550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_02555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRK99_02560 PF13419 Haloacid dehalogenase-like hydrolase NRK99_02565 PF00293 NUDIX domain NRK99_02570 PF00459 Inositol monophosphatase family NRK99_02575 PF03222 Tryptophan/tyrosine permease family NRK99_02580 PF01588 Putative tRNA binding domain NRK99_02585 PF06445 GyrI-like small molecule binding domain NRK99_02585 PF12833 Helix-turn-helix domain NRK99_02590 PF01340 Met Apo-repressor, MetJ NRK99_02595 PF01053 Cys/Met metabolism PLP-dependent enzyme NRK99_02600 PF03447 Homoserine dehydrogenase, NAD binding domain NRK99_02600 PF00742 Homoserine dehydrogenase NRK99_02600 PF00696 Amino acid kinase family NRK99_02605 PF00311 Phosphoenolpyruvate carboxylase NRK99_02610 PF01546 Peptidase family M20/M25/M40 NRK99_02610 PF07687 Peptidase dimerisation domain NRK99_02615 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRK99_02615 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRK99_02620 PF00696 Amino acid kinase family NRK99_02625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRK99_02625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRK99_02630 PF00764 Arginosuccinate synthase NRK99_02635 PF00206 Lyase NRK99_02635 PF14698 Argininosuccinate lyase C-terminal NRK99_02660 PF12464 Maltose acetyltransferase NRK99_02660 PF14602 Hexapeptide repeat of succinyl-transferase NRK99_02665 PF13194 Domain of unknown function (DUF4010) NRK99_02680 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_02685 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_02690 PF00005 ABC transporter NRK99_02690 PF12857 TOBE-like domain NRK99_02695 PF03466 LysR substrate binding domain NRK99_02695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_02700 PF18416 N-acetylglucosamine binding protein domain 2 NRK99_02700 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRK99_02705 PF17200 Single Cache domain 2 NRK99_02705 PF00672 HAMP domain NRK99_02705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_02735 PF07676 WD40-like Beta Propeller Repeat NRK99_02735 PF14685 Tricorn protease PDZ domain NRK99_02735 PF14684 Tricorn protease C1 domain NRK99_02735 PF03572 Peptidase family S41 NRK99_02755 PF11230 Protein of unknown function (DUF3029) NRK99_02760 PF04055 Radical SAM superfamily NRK99_02770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_02770 PF03466 LysR substrate binding domain NRK99_02775 PF00155 Aminotransferase class I and II NRK99_02780 PF02583 Metal-sensitive transcriptional repressor NRK99_02795 PF11852 Domain of unknown function (DUF3372) NRK99_02795 PF03714 Bacterial pullanase-associated domain NRK99_02795 PF18494 Pullulanase Ins domain NRK99_02795 PF17967 Pullulanase N2 domain NRK99_02795 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRK99_02800 PF00403 Heavy-metal-associated domain NRK99_02805 PF08534 Redoxin NRK99_02815 PF00271 Helicase conserved C-terminal domain NRK99_02815 PF00270 DEAD/DEAH box helicase NRK99_02830 PF03372 Endonuclease/Exonuclease/phosphatase family NRK99_02845 PF06062 Uncharacterised protein family (UPF0231) NRK99_02850 PF13556 PucR C-terminal helix-turn-helix domain NRK99_02850 PF05651 Putative sugar diacid recognition NRK99_02850 PF17853 GGDEF-like domain NRK99_02855 PF02447 GntP family permease NRK99_02860 PF02595 Glycerate kinase family NRK99_02870 PF00255 Glutathione peroxidase NRK99_02875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_02875 PF03466 LysR substrate binding domain NRK99_02880 PF07670 Nucleoside recognition NRK99_02880 PF07662 Na+ dependent nucleoside transporter C-terminus NRK99_02880 PF01773 Na+ dependent nucleoside transporter N-terminus NRK99_02885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRK99_02885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRK99_02890 PF00472 RF-1 domain NRK99_02895 PF00543 Nitrogen regulatory protein P-II NRK99_02900 PF13416 Bacterial extracellular solute-binding protein NRK99_02910 PF00005 ABC transporter NRK99_02910 PF08402 TOBE domain NRK99_02915 PF04261 Dyp-type peroxidase family NRK99_02920 PF01316 Arginine repressor, DNA binding domain NRK99_02920 PF02863 Arginine repressor, C-terminal domain NRK99_02925 PF00005 ABC transporter NRK99_02930 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_02935 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_02940 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_02945 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NRK99_02945 PF00056 lactate/malate dehydrogenase, NAD binding domain NRK99_02950 PF08238 Sel1 repeat NRK99_02955 PF00970 Oxidoreductase FAD-binding domain NRK99_02955 PF00042 Globin NRK99_02955 PF00175 Oxidoreductase NAD-binding domain NRK99_02960 PF02082 Transcriptional regulator NRK99_02965 PF00571 CBS domain NRK99_02965 PF03471 Transporter associated domain NRK99_02965 PF01595 Cyclin M transmembrane N-terminal domain NRK99_02970 PF01578 Cytochrome C assembly protein NRK99_02975 PF02978 Signal peptide binding domain NRK99_02975 PF02881 SRP54-type protein, helical bundle domain NRK99_02975 PF00448 SRP54-type protein, GTPase domain NRK99_02980 PF00886 Ribosomal protein S16 NRK99_02985 PF05239 PRC-barrel domain NRK99_02985 PF01782 RimM N-terminal domain NRK99_02990 PF01746 tRNA (Guanine-1)-methyltransferase NRK99_02995 PF01245 Ribosomal protein L19 NRK99_03005 PF02976 DNA mismatch repair enzyme MutH NRK99_03010 PF00293 NUDIX domain NRK99_03015 PF01590 GAF domain NRK99_03015 PF05524 PEP-utilising enzyme, N-terminal NRK99_03015 PF00391 PEP-utilising enzyme, mobile domain NRK99_03015 PF02896 PEP-utilising enzyme, TIM barrel domain NRK99_03020 PF01790 Prolipoprotein diacylglyceryl transferase NRK99_03025 PF00303 Thymidylate synthase NRK99_03030 PF06965 Na+/H+ antiporter 1 NRK99_03070 PF17482 Phage tail sheath C-terminal domain NRK99_03070 PF04984 Phage tail sheath protein subtilisin-like domain NRK99_03245 PF00145 C-5 cytosine-specific DNA methylase NRK99_03310 PF06892 Phage regulatory protein CII (CP76) NRK99_03340 PF02899 Phage integrase, N-terminal SAM-like domain NRK99_03340 PF00589 Phage integrase family NRK99_03345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_03345 PF03466 LysR substrate binding domain NRK99_03350 PF01022 Bacterial regulatory protein, arsR family NRK99_03355 PF01649 Ribosomal protein S20 NRK99_03360 PF03023 Lipid II flippase MurJ NRK99_03365 PF06574 FAD synthetase NRK99_03365 PF01687 Riboflavin kinase NRK99_03370 PF06827 Zinc finger found in FPG and IleRS NRK99_03370 PF00133 tRNA synthetases class I (I, L, M and V) NRK99_03370 PF08264 Anticodon-binding domain of tRNA NRK99_03375 PF01252 Signal peptidase (SPase) II NRK99_03380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK99_03385 PF02401 LytB protein NRK99_03390 PF07963 Prokaryotic N-terminal methylation motif NRK99_03390 PF12019 Type II transport protein GspH NRK99_03410 PF05567 Neisseria PilC beta-propeller domain NRK99_03415 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor NRK99_03415 PF07963 Prokaryotic N-terminal methylation motif NRK99_03445 PF00795 Carbon-nitrogen hydrolase NRK99_03445 PF02540 NAD synthase NRK99_03450 PF00543 Nitrogen regulatory protein P-II NRK99_03460 PF02664 S-Ribosylhomocysteinase (LuxS) NRK99_03465 PF00990 Diguanylate cyclase, GGDEF domain NRK99_03470 PF17876 Cold shock domain NRK99_03470 PF08461 Ribonuclease R winged-helix domain NRK99_03470 PF08206 Ribonuclease B OB domain NRK99_03470 PF00773 RNB domain NRK99_03470 PF00575 S1 RNA binding domain NRK99_03500 PF00588 SpoU rRNA Methylase family NRK99_03500 PF08032 RNA 2'-O ribose methyltransferase substrate binding NRK99_03515 PF13673 Acetyltransferase (GNAT) domain NRK99_03520 PF00892 EamA-like transporter family NRK99_03540 PF07690 Major Facilitator Superfamily NRK99_03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_03550 PF03466 LysR substrate binding domain NRK99_03560 PF01566 Natural resistance-associated macrophage protein NRK99_03565 PF01250 Ribosomal protein S6 NRK99_03570 PF01084 Ribosomal protein S18 NRK99_03575 PF03948 Ribosomal protein L9, C-terminal domain NRK99_03575 PF01281 Ribosomal protein L9, N-terminal domain NRK99_03580 PF00970 Oxidoreductase FAD-binding domain NRK99_03580 PF00175 Oxidoreductase NAD-binding domain NRK99_03605 PF00698 Acyl transferase domain NRK99_03605 PF08240 Alcohol dehydrogenase GroES-like domain NRK99_03605 PF08990 Erythronolide synthase docking NRK99_03605 PF16197 Ketoacyl-synthetase C-terminal extension NRK99_03605 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK99_03605 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK99_03605 PF08659 KR domain NRK99_03605 PF00550 Phosphopantetheine attachment site NRK99_03605 PF14765 Polyketide synthase dehydratase NRK99_03610 PF09335 SNARE associated Golgi protein NRK99_03615 PF05193 Peptidase M16 inactive domain NRK99_03615 PF00675 Insulinase (Peptidase family M16) NRK99_03620 PF04262 Glutamate-cysteine ligase NRK99_03625 PF00501 AMP-binding enzyme NRK99_03635 PF00583 Acetyltransferase (GNAT) family NRK99_03645 PF07728 AAA domain (dynein-related subfamily) NRK99_03645 PF12592 Protein of unknown function (DUF3763) NRK99_03645 PF17868 AAA lid domain NRK99_03650 PF05762 VWA domain containing CoxE-like protein NRK99_03660 PF01037 Lrp/AsnC ligand binding domain NRK99_03665 PF00990 Diguanylate cyclase, GGDEF domain NRK99_03665 PF13426 PAS domain NRK99_03665 PF00563 EAL domain NRK99_03670 PF00990 Diguanylate cyclase, GGDEF domain NRK99_03670 PF00072 Response regulator receiver domain NRK99_03675 PF00009 Elongation factor Tu GTP binding domain NRK99_03675 PF03144 Elongation factor Tu domain 2 NRK99_03675 PF16658 Class II release factor RF3, C-terminal domain NRK99_03685 PF00583 Acetyltransferase (GNAT) family NRK99_03690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRK99_03700 PF04480 Protein of unknown function (DUF559) NRK99_03705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_03705 PF03466 LysR substrate binding domain NRK99_03710 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRK99_03715 PF01425 Amidase NRK99_03725 PF00753 Metallo-beta-lactamase superfamily NRK99_03735 PF02627 Carboxymuconolactone decarboxylase family NRK99_03740 PF02525 Flavodoxin-like fold NRK99_03750 PF00271 Helicase conserved C-terminal domain NRK99_03750 PF00270 DEAD/DEAH box helicase NRK99_03755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_03755 PF03466 LysR substrate binding domain NRK99_03770 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase NRK99_03785 PF00445 Ribonuclease T2 family NRK99_03795 PF03060 Nitronate monooxygenase NRK99_03825 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NRK99_03825 PF00293 NUDIX domain NRK99_03825 PF09297 NADH pyrophosphatase zinc ribbon domain NRK99_03830 PF00672 HAMP domain NRK99_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_03830 PF16527 Two-component sensor protein CpxA, periplasmic domain NRK99_03830 PF00512 His Kinase A (phospho-acceptor) domain NRK99_03835 PF00072 Response regulator receiver domain NRK99_03835 PF00486 Transcriptional regulatory protein, C terminal NRK99_03840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_03845 PF00005 ABC transporter NRK99_03845 PF12704 MacB-like periplasmic core domain NRK99_03845 PF02687 FtsX-like permease family NRK99_03850 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_03855 PF00005 ABC transporter NRK99_03860 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_03870 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_03875 PF00291 Pyridoxal-phosphate dependent enzyme NRK99_03880 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRK99_03880 PF00326 Prolyl oligopeptidase family NRK99_03885 PF05170 AsmA family NRK99_03900 PF08335 GlnD PII-uridylyltransferase NRK99_03900 PF03710 Glutamate-ammonia ligase adenylyltransferase NRK99_03910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_03910 PF02743 Cache domain NRK99_03910 PF00672 HAMP domain NRK99_03915 PF00520 Ion transport protein NRK99_03915 PF00027 Cyclic nucleotide-binding domain NRK99_03920 PF08239 Bacterial SH3 domain NRK99_03925 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NRK99_03925 PF14850 DNA-binding domain of Proline dehydrogenase NRK99_03925 PF01619 Proline dehydrogenase NRK99_03925 PF00171 Aldehyde dehydrogenase family NRK99_03930 PF00293 NUDIX domain NRK99_03930 PF09297 NADH pyrophosphatase zinc ribbon domain NRK99_03935 PF01208 Uroporphyrinogen decarboxylase (URO-D) NRK99_03940 PF00480 ROK family NRK99_03945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRK99_03945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRK99_03950 PF00162 Phosphoglycerate kinase NRK99_03955 PF01116 Fructose-bisphosphate aldolase class-II NRK99_03960 PF01266 FAD dependent oxidoreductase NRK99_03980 PF02683 Cytochrome C biogenesis protein transmembrane region NRK99_03980 PF11412 Disulphide bond corrector protein DsbC NRK99_03985 PF03091 CutA1 divalent ion tolerance protein NRK99_04000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_04000 PF03466 LysR substrate binding domain NRK99_04005 PF01571 Aminomethyltransferase folate-binding domain NRK99_04010 PF03937 Flavinator of succinate dehydrogenase NRK99_04020 PF02910 Fumarate reductase flavoprotein C-term NRK99_04020 PF00890 FAD binding domain NRK99_04025 PF04542 Sigma-70 region 2 NRK99_04025 PF08281 Sigma-70, region 4 NRK99_04030 PF03872 Anti sigma-E protein RseA, N-terminal domain NRK99_04030 PF03873 Anti sigma-E protein RseA, C-terminal domain NRK99_04035 PF03888 MucB/RseB N-terminal domain NRK99_04035 PF17188 MucB/RseB C-terminal domain NRK99_04045 PF06421 GTP-binding protein LepA C-terminus NRK99_04045 PF03144 Elongation factor Tu domain 2 NRK99_04045 PF00679 Elongation factor G C-terminus NRK99_04045 PF00009 Elongation factor Tu GTP binding domain NRK99_04050 PF10502 Signal peptidase, peptidase S26 NRK99_04055 PF14622 Ribonuclease-III-like NRK99_04055 PF00035 Double-stranded RNA binding motif NRK99_04060 PF07650 KH domain NRK99_04060 PF01926 50S ribosome-binding GTPase NRK99_04065 PF02565 Recombination protein O C terminal NRK99_04065 PF11967 Recombination protein O N terminal NRK99_04070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NRK99_04080 PF01116 Fructose-bisphosphate aldolase class-II NRK99_04085 PF01979 Amidohydrolase family NRK99_04090 PF03610 PTS system fructose IIA component NRK99_04095 PF03613 PTS system mannose/fructose/sorbose family IID component NRK99_04100 PF03609 PTS system sorbose-specific iic component NRK99_04105 PF03830 PTS system sorbose subfamily IIB component NRK99_04110 PF01380 SIS domain NRK99_04115 PF08013 Tagatose 6 phosphate kinase NRK99_04120 PF00455 DeoR C terminal sensor domain NRK99_04120 PF08220 DeoR-like helix-turn-helix domain NRK99_04125 PF01510 N-acetylmuramoyl-L-alanine amidase NRK99_04130 PF07308 Protein of unknown function (DUF1456) NRK99_04135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK99_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_04135 PF00512 His Kinase A (phospho-acceptor) domain NRK99_04135 PF01627 Hpt domain NRK99_04135 PF00072 Response regulator receiver domain NRK99_04135 PF00672 HAMP domain NRK99_04140 PF01938 TRAM domain NRK99_04140 PF05958 tRNA (Uracil-5-)-methyltransferase NRK99_04145 PF02824 TGS domain NRK99_04145 PF13291 ACT domain NRK99_04145 PF04607 Region found in RelA / SpoT proteins NRK99_04150 PF03819 MazG nucleotide pyrophosphohydrolase domain NRK99_04155 PF00117 Glutamine amidotransferase class-I NRK99_04155 PF06418 CTP synthase N-terminus NRK99_04160 PF00113 Enolase, C-terminal TIM barrel domain NRK99_04160 PF03952 Enolase, N-terminal domain NRK99_04165 PF04977 Septum formation initiator NRK99_04170 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRK99_04175 PF02542 YgbB family NRK99_04180 PF01142 tRNA pseudouridine synthase D (TruD) NRK99_04185 PF01975 Survival protein SurE NRK99_04195 PF09335 SNARE associated Golgi protein NRK99_04200 PF01476 LysM domain NRK99_04200 PF01551 Peptidase family M23 NRK99_04205 PF04542 Sigma-70 region 2 NRK99_04205 PF00140 Sigma-70 factor, region 1.2 NRK99_04205 PF04545 Sigma-70, region 4 NRK99_04205 PF04539 Sigma-70 region 3 NRK99_04210 PF00814 Glycoprotease family NRK99_04215 PF01165 Ribosomal protein S21 NRK99_04220 PF09424 Yqey-like protein NRK99_04225 PF08275 DNA primase catalytic core, N-terminal domain NRK99_04225 PF10410 DnaB-helicase binding domain of primase NRK99_04225 PF08278 DNA primase DnaG DnaB-binding NRK99_04225 PF01807 CHC2 zinc finger NRK99_04230 PF04546 Sigma-70, non-essential region NRK99_04230 PF03979 Sigma-70 factor, region 1.1 NRK99_04230 PF00140 Sigma-70 factor, region 1.2 NRK99_04230 PF04545 Sigma-70, region 4 NRK99_04230 PF04539 Sigma-70 region 3 NRK99_04230 PF04542 Sigma-70 region 2 NRK99_04250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NRK99_04250 PF02844 Phosphoribosylglycinamide synthetase, N domain NRK99_04250 PF02843 Phosphoribosylglycinamide synthetase, C domain NRK99_04255 PF01808 AICARFT/IMPCHase bienzyme NRK99_04255 PF02142 MGS-like domain NRK99_04260 PF13411 MerR HTH family regulatory protein NRK99_04270 PF03889 Alternative ribosome-rescue factor A NRK99_04275 PF06969 HemN C-terminal domain NRK99_04275 PF04055 Radical SAM superfamily NRK99_04280 PF01725 Ham1 family NRK99_04285 PF07690 Major Facilitator Superfamily NRK99_04290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRK99_04290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRK99_04300 PF13302 Acetyltransferase (GNAT) domain NRK99_04305 PF13302 Acetyltransferase (GNAT) domain NRK99_04310 PF01447 Thermolysin metallopeptidase, catalytic domain NRK99_04310 PF03413 Peptidase propeptide and YPEB domain NRK99_04310 PF04151 Bacterial pre-peptidase C-terminal domain NRK99_04310 PF02868 Thermolysin metallopeptidase, alpha-helical domain NRK99_04310 PF07504 Fungalysin/Thermolysin Propeptide Motif NRK99_04315 PF03466 LysR substrate binding domain NRK99_04315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_04320 PF07690 Major Facilitator Superfamily NRK99_04325 PF00267 Gram-negative porin NRK99_04330 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRK99_04335 PF10415 Fumarase C C-terminus NRK99_04335 PF00206 Lyase NRK99_04340 PF04186 FxsA cytoplasmic membrane protein NRK99_04345 PF01554 MatE NRK99_04350 PF00166 Chaperonin 10 Kd subunit NRK99_04355 PF00118 TCP-1/cpn60 chaperonin family NRK99_04365 PF00563 EAL domain NRK99_04365 PF00990 Diguanylate cyclase, GGDEF domain NRK99_04365 PF03707 Bacterial signalling protein N terminal repeat NRK99_04365 PF13188 PAS domain NRK99_04375 PF00849 RNA pseudouridylate synthase NRK99_04380 PF12137 RNA polymerase recycling family C-terminal NRK99_04380 PF18337 RapA N-terminal Tudor like domain NRK99_04380 PF00176 SNF2 family N-terminal domain NRK99_04380 PF00271 Helicase conserved C-terminal domain NRK99_04380 PF18339 RapA N-terminal Tudor like domain 1 NRK99_04410 PF00317 Ribonucleotide reductase, all-alpha domain NRK99_04410 PF02867 Ribonucleotide reductase, barrel domain NRK99_04410 PF08343 Ribonucleotide reductase N-terminal NRK99_04420 PF02562 PhoH-like protein NRK99_04420 PF13638 PIN domain NRK99_04430 PF00005 ABC transporter NRK99_04435 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_04455 PF00694 Aconitase C-terminal domain NRK99_04460 PF00330 Aconitase family (aconitate hydratase) NRK99_04465 PF00180 Isocitrate/isopropylmalate dehydrogenase NRK99_04470 PF08502 LeuA allosteric (dimerisation) domain NRK99_04470 PF00682 HMGL-like NRK99_04480 PF01569 PAP2 superfamily NRK99_04495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK99_04495 PF00205 Thiamine pyrophosphate enzyme, central domain NRK99_04495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRK99_04500 PF10369 Small subunit of acetolactate synthase NRK99_04505 PF07085 DRTGG domain NRK99_04505 PF01515 Phosphate acetyl/butaryl transferase NRK99_04510 PF00871 Acetokinase family NRK99_04515 PF04217 Protein of unknown function, DUF412 NRK99_04520 PF03887 YfbU domain NRK99_04525 PF00578 AhpC/TSA family NRK99_04530 PF01842 ACT domain NRK99_04535 PF00701 Dihydrodipicolinate synthetase family NRK99_04540 PF06804 NlpB/DapX lipoprotein NRK99_04545 PF01259 SAICAR synthetase NRK99_04555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_04555 PF03466 LysR substrate binding domain NRK99_04560 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NRK99_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_04580 PF00512 His Kinase A (phospho-acceptor) domain NRK99_04580 PF18415 Histidine kinase receptor ArcB trans-membrane domain NRK99_04580 PF01627 Hpt domain NRK99_04580 PF00989 PAS fold NRK99_04580 PF00072 Response regulator receiver domain NRK99_04585 PF13286 Phosphohydrolase-associated domain NRK99_04585 PF01966 HD domain NRK99_04595 PF09456 RcsC Alpha-Beta-Loop (ABL) NRK99_04595 PF00512 His Kinase A (phospho-acceptor) domain NRK99_04595 PF00072 Response regulator receiver domain NRK99_04595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_04600 PF00990 Diguanylate cyclase, GGDEF domain NRK99_04600 PF03707 Bacterial signalling protein N terminal repeat NRK99_04600 PF00563 EAL domain NRK99_04605 PF12729 Four helix bundle sensory module for signal transduction NRK99_04605 PF00672 HAMP domain NRK99_04605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_04610 PF02357 Transcription termination factor nusG NRK99_04615 PF03180 NLPA lipoprotein NRK99_04620 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_04625 PF09383 NIL domain NRK99_04625 PF00005 ABC transporter NRK99_04635 PF00480 ROK family NRK99_04640 PF08331 Domain of unknown function (DUF1730) NRK99_04645 PF01256 Carbohydrate kinase NRK99_04645 PF03853 YjeF-related protein N-terminus NRK99_04650 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NRK99_04655 PF01520 N-acetylmuramoyl-L-alanine amidase NRK99_04660 PF01119 DNA mismatch repair protein, C-terminal domain NRK99_04660 PF08676 MutL C terminal dimerisation domain NRK99_04670 PF17209 Hfq protein NRK99_04675 PF16360 GTP-binding GTPase Middle Region NRK99_04675 PF13167 GTP-binding GTPase N-terminal NRK99_04675 PF01926 50S ribosome-binding GTPase NRK99_04680 PF01145 SPFH domain / Band 7 family NRK99_04680 PF12221 Bacterial membrane protein N terminal NRK99_04685 PF01145 SPFH domain / Band 7 family NRK99_04690 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NRK99_04695 PF00348 Polyprenyl synthetase NRK99_04700 PF00829 Ribosomal prokaryotic L21 protein NRK99_04705 PF01016 Ribosomal L27 protein NRK99_04710 PF01926 50S ribosome-binding GTPase NRK99_04710 PF01018 GTP1/OBG NRK99_04715 PF07670 Nucleoside recognition NRK99_04720 PF13193 AMP-binding enzyme C-terminal domain NRK99_04720 PF00501 AMP-binding enzyme NRK99_04740 PF00296 Luciferase-like monooxygenase NRK99_04750 PF00149 Calcineurin-like phosphoesterase NRK99_04755 PF04379 ApaG domain NRK99_04760 PF00398 Ribosomal RNA adenine dimethylase NRK99_04765 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NRK99_04770 PF09312 SurA N-terminal domain NRK99_04770 PF00639 PPIC-type PPIASE domain NRK99_04775 PF03968 OstA-like protein NRK99_04775 PF04453 LPS transport system D NRK99_04780 PF01636 Phosphotransferase enzyme family NRK99_04785 PF00483 Nucleotidyl transferase NRK99_04790 PF00226 DnaJ domain NRK99_04790 PF05099 Tellurite resistance protein TerB NRK99_04795 PF00860 Permease family NRK99_04805 PF12848 ABC transporter NRK99_04805 PF00005 ABC transporter NRK99_04820 PF01048 Phosphorylase superfamily NRK99_04825 PF01464 Transglycosylase SLT domain NRK99_04835 PF01370 NAD dependent epimerase/dehydratase family NRK99_04850 PF00005 ABC transporter NRK99_04855 PF01032 FecCD transport family NRK99_04865 PF06228 Haem utilisation ChuX/HutX NRK99_04870 PF01243 Pyridoxamine 5'-phosphate oxidase NRK99_04890 PF00593 TonB dependent receptor NRK99_04890 PF07715 TonB-dependent Receptor Plug Domain NRK99_04895 PF12832 MFS_1 like family NRK99_04905 PF13443 Cro/C1-type HTH DNA-binding domain NRK99_04915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_04915 PF00512 His Kinase A (phospho-acceptor) domain NRK99_04915 PF00989 PAS fold NRK99_04920 PF00704 Glycosyl hydrolases family 18 NRK99_04920 PF08329 Chitinase A, N-terminal domain NRK99_04925 PF12561 ToxR activated gene A lipoprotein domain NRK99_04925 PF17945 Beta/Gamma crystallin NRK99_04930 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRK99_04930 PF18416 N-acetylglucosamine binding protein domain 2 NRK99_04935 PF08241 Methyltransferase domain NRK99_04940 PF00027 Cyclic nucleotide-binding domain NRK99_04940 PF13545 Crp-like helix-turn-helix domain NRK99_04945 PF02566 OsmC-like protein NRK99_04960 PF00485 Phosphoribulokinase / Uridine kinase family NRK99_04965 PF00893 Small Multidrug Resistance protein NRK99_04970 PF00892 EamA-like transporter family NRK99_04975 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NRK99_04980 PF01522 Polysaccharide deacetylase NRK99_04985 PF02911 Formyl transferase, C-terminal domain NRK99_04985 PF01370 NAD dependent epimerase/dehydratase family NRK99_04985 PF00551 Formyl transferase NRK99_04990 PF00535 Glycosyl transferase family 2 NRK99_04995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRK99_05000 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRK99_05000 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRK99_05000 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRK99_05005 PF06794 Uncharacterised protein family (UPF0270) NRK99_05010 PF00561 alpha/beta hydrolase fold NRK99_05015 PF01584 CheW-like domain NRK99_05015 PF00072 Response regulator receiver domain NRK99_05025 PF09526 Probable metal-binding protein (DUF2387) NRK99_05030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK99_05035 PF04102 SlyX NRK99_05045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK99_05045 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRK99_05050 PF00072 Response regulator receiver domain NRK99_05050 PF02954 Bacterial regulatory protein, Fis family NRK99_05050 PF00158 Sigma-54 interaction domain NRK99_05070 PF00149 Calcineurin-like phosphoesterase NRK99_05070 PF02872 5'-nucleotidase, C-terminal domain NRK99_05075 PF00563 EAL domain NRK99_05075 PF12792 CSS motif domain associated with EAL NRK99_05085 PF03796 DnaB-like helicase C terminal domain NRK99_05085 PF00772 DnaB-like helicase N terminal domain NRK99_05090 PF01168 Alanine racemase, N-terminal domain NRK99_05090 PF00842 Alanine racemase, C-terminal domain NRK99_05095 PF12838 4Fe-4S dicluster domain NRK99_05100 PF01136 Peptidase family U32 NRK99_05100 PF16325 Peptidase family U32 C-terminal domain NRK99_05105 PF00563 EAL domain NRK99_05105 PF01590 GAF domain NRK99_05105 PF00990 Diguanylate cyclase, GGDEF domain NRK99_05105 PF00989 PAS fold NRK99_05130 PF00266 Aminotransferase class-V NRK99_05135 PF01339 CheB methylesterase NRK99_05135 PF00072 Response regulator receiver domain NRK99_05140 PF03975 CheD chemotactic sensory transduction NRK99_05145 PF01739 CheR methyltransferase, SAM binding domain NRK99_05145 PF03705 CheR methyltransferase, all-alpha domain NRK99_05150 PF00672 HAMP domain NRK99_05150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_05155 PF01584 CheW-like domain NRK99_05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_05160 PF12729 Four helix bundle sensory module for signal transduction NRK99_05160 PF00672 HAMP domain NRK99_05165 PF09078 CheY binding NRK99_05165 PF02895 Signal transducing histidine kinase, homodimeric domain NRK99_05165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_05165 PF01584 CheW-like domain NRK99_05165 PF01627 Hpt domain NRK99_05175 PF00072 Response regulator receiver domain NRK99_05180 PF00672 HAMP domain NRK99_05180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_05185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRK99_05185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRK99_05190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_05190 PF03466 LysR substrate binding domain NRK99_05195 PF01810 LysE type translocator NRK99_05200 PF12392 Collagenase NRK99_05200 PF01136 Peptidase family U32 NRK99_05215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRK99_05215 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRK99_05220 PF02805 Metal binding domain of Ada NRK99_05220 PF12833 Helix-turn-helix domain NRK99_05220 PF00730 HhH-GPD superfamily base excision DNA repair protein NRK99_05220 PF06029 AlkA N-terminal domain NRK99_05230 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NRK99_05255 PF00106 short chain dehydrogenase NRK99_05260 PF03573 outer membrane porin, OprD family NRK99_05265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_05265 PF00672 HAMP domain NRK99_05265 PF02743 Cache domain NRK99_05275 PF02447 GntP family permease NRK99_05280 PF01370 NAD dependent epimerase/dehydratase family NRK99_05285 PF01261 Xylose isomerase-like TIM barrel NRK99_05290 PF00596 Class II Aldolase and Adducin N-terminal domain NRK99_05295 PF17042 Nucleotide-binding C-terminal domain NRK99_05295 PF07005 Sugar-binding N-terminal domain NRK99_05300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRK99_05300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRK99_05305 PF00455 DeoR C terminal sensor domain NRK99_05305 PF08220 DeoR-like helix-turn-helix domain NRK99_05330 PF00800 Prephenate dehydratase NRK99_05330 PF01817 Chorismate mutase type II NRK99_05360 PF08349 Protein of unknown function (DUF1722) NRK99_05365 PF13411 MerR HTH family regulatory protein NRK99_05370 PF00875 DNA photolyase NRK99_05370 PF03441 FAD binding domain of DNA photolyase NRK99_05380 PF00106 short chain dehydrogenase NRK99_05420 PF00210 Ferritin-like domain NRK99_05425 PF03063 Prismane/CO dehydrogenase family NRK99_05430 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK99_05430 PF00175 Oxidoreductase NAD-binding domain NRK99_05430 PF00970 Oxidoreductase FAD-binding domain NRK99_05435 PF16363 GDP-mannose 4,6 dehydratase NRK99_05440 PF06965 Na+/H+ antiporter 1 NRK99_05440 PF13462 Thioredoxin NRK99_05450 PF08479 POTRA domain, ShlB-type NRK99_05450 PF17287 POTRA domain NRK99_05450 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NRK99_05455 PF13332 Hemagglutinin repeat NRK99_05455 PF15605 Bacterial toxin 28 NRK99_05455 PF04829 Pre-toxin domain with VENN motif NRK99_05455 PF04829 Pre-toxin domain with VENN motif NRK99_05455 PF15605 Bacterial toxin 28 NRK99_05455 PF05860 haemagglutination activity domain NRK99_05455 PF05860 haemagglutination activity domain NRK99_05455 PF13332 Hemagglutinin repeat NRK99_05460 PF18616 CDI immunity proteins NRK99_05475 PF03472 Autoinducer binding domain NRK99_05475 PF00196 Bacterial regulatory proteins, luxR family NRK99_05480 PF05638 Type VI secretion system effector, Hcp NRK99_05490 PF04717 Type VI secretion system, phage-baseplate injector NRK99_05495 PF13503 Domain of unknown function (DUF4123) NRK99_05520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_05520 PF03466 LysR substrate binding domain NRK99_05525 PF03306 Alpha-acetolactate decarboxylase NRK99_05530 PF00205 Thiamine pyrophosphate enzyme, central domain NRK99_05530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK99_05530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRK99_05535 PF01965 DJ-1/PfpI family NRK99_05540 PF08546 Ketopantoate reductase PanE/ApbA C terminal NRK99_05540 PF02558 Ketopantoate reductase PanE/ApbA NRK99_05545 PF04461 Protein of unknown function (DUF520) NRK99_05550 PF03502 Nucleoside-specific channel-forming protein, Tsx NRK99_05555 PF07690 Major Facilitator Superfamily NRK99_05565 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRK99_05575 PF05175 Methyltransferase small domain NRK99_05580 PF01722 BolA-like protein NRK99_05585 PF11973 NQRA C-terminal domain NRK99_05585 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NRK99_05590 PF03116 NQR2, RnfD, RnfE family NRK99_05595 PF04205 FMN-binding domain NRK99_05600 PF02508 Rnf-Nqr subunit, membrane protein NRK99_05605 PF02508 Rnf-Nqr subunit, membrane protein NRK99_05610 PF00970 Oxidoreductase FAD-binding domain NRK99_05610 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK99_05610 PF00175 Oxidoreductase NAD-binding domain NRK99_05615 PF02424 ApbE family NRK99_05630 PF11798 IMS family HHH motif NRK99_05630 PF11799 impB/mucB/samB family C-terminal domain NRK99_05630 PF00817 impB/mucB/samB family NRK99_05635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_05635 PF00672 HAMP domain NRK99_05640 PF03466 LysR substrate binding domain NRK99_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_05650 PF04241 Protein of unknown function (DUF423) NRK99_05655 PF01728 FtsJ-like methyltransferase NRK99_05655 PF18125 RlmM ferredoxin-like domain NRK99_05665 PF00180 Isocitrate/isopropylmalate dehydrogenase NRK99_05665 PF18324 Hypothetical protein TT1725 NRK99_05670 PF01367 5'-3' exonuclease, C-terminal SAM fold NRK99_05670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRK99_05675 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NRK99_05675 PF03641 Possible lysine decarboxylase NRK99_05675 PF11892 Domain of unknown function (DUF3412) NRK99_05680 PF00990 Diguanylate cyclase, GGDEF domain NRK99_05690 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NRK99_05690 PF14489 QueF-like protein NRK99_05695 PF07348 Syd protein (SUKH-2) NRK99_05700 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NRK99_05725 PF04287 tRNA pseudouridine synthase C NRK99_05730 PF00849 RNA pseudouridylate synthase NRK99_05735 PF00258 Flavodoxin NRK99_05740 PF02264 LamB porin NRK99_05745 PF07148 Maltose operon periplasmic protein precursor (MalM) NRK99_05750 PF00367 phosphotransferase system, EIIB NRK99_05750 PF02378 Phosphotransferase system, EIIC NRK99_05755 PF11944 Protein of unknown function (DUF3461) NRK99_05760 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_05760 PF14602 Hexapeptide repeat of succinyl-transferase NRK99_05760 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NRK99_05765 PF08335 GlnD PII-uridylyltransferase NRK99_05765 PF01842 ACT domain NRK99_05765 PF01966 HD domain NRK99_05765 PF01909 Nucleotidyltransferase domain NRK99_05770 PF00557 Metallopeptidase family M24 NRK99_05775 PF00318 Ribosomal protein S2 NRK99_05780 PF00889 Elongation factor TS NRK99_05785 PF00696 Amino acid kinase family NRK99_05790 PF01765 Ribosome recycling factor NRK99_05795 PF01255 Putative undecaprenyl diphosphate synthase NRK99_05805 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NRK99_05805 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NRK99_05805 PF13288 DXP reductoisomerase C-terminal domain NRK99_05810 PF02163 Peptidase family M50 NRK99_05810 PF17820 PDZ domain NRK99_05815 PF07244 Surface antigen variable number repeat NRK99_05815 PF01103 Surface antigen NRK99_05820 PF03938 Outer membrane protein (OmpH-like) NRK99_05825 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_05825 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NRK99_05830 PF07977 FabA-like domain NRK99_05835 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_05835 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NRK99_05840 PF02684 Lipid-A-disaccharide synthetase NRK99_05845 PF01351 Ribonuclease HII NRK99_05850 PF01336 OB-fold nucleic acid binding domain NRK99_05850 PF02811 PHP domain NRK99_05850 PF14579 Helix-hairpin-helix motif NRK99_05850 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NRK99_05850 PF07733 Bacterial DNA polymerase III alpha NTPase domain NRK99_05855 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NRK99_05860 PF18500 CadC C-terminal domain 1 NRK99_05860 PF00486 Transcriptional regulatory protein, C terminal NRK99_05865 PF13520 Amino acid permease NRK99_05870 PF01276 Orn/Lys/Arg decarboxylase, major domain NRK99_05870 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NRK99_05870 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NRK99_05875 PF08543 Phosphomethylpyrimidine kinase NRK99_05885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_05885 PF03466 LysR substrate binding domain NRK99_05895 PF13520 Amino acid permease NRK99_05900 PF13302 Acetyltransferase (GNAT) domain NRK99_05905 PF12848 ABC transporter NRK99_05905 PF00005 ABC transporter NRK99_05910 PF00834 Ribulose-phosphate 3 epimerase family NRK99_05915 PF13419 Haloacid dehalogenase-like hydrolase NRK99_05920 PF00579 tRNA synthetases class I (W and Y) NRK99_05930 PF00117 Glutamine amidotransferase class-I NRK99_05935 PF00202 Aminotransferase class-III NRK99_05940 PF04958 Arginine N-succinyltransferase beta subunit NRK99_05945 PF00171 Aldehyde dehydrogenase family NRK99_05955 PF13419 Haloacid dehalogenase-like hydrolase NRK99_05960 PF07690 Major Facilitator Superfamily NRK99_05965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK99_05965 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRK99_05965 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRK99_05965 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRK99_05965 PF10371 Domain of unknown function NRK99_05985 PF00392 Bacterial regulatory proteins, gntR family NRK99_05985 PF00155 Aminotransferase class I and II NRK99_05995 PF12848 ABC transporter NRK99_05995 PF00005 ABC transporter NRK99_06005 PF16657 Maltogenic Amylase, C-terminal domain NRK99_06005 PF00128 Alpha amylase, catalytic domain NRK99_06015 PF04266 ASCH domain NRK99_06025 PF01048 Phosphorylase superfamily NRK99_06030 PF04973 Nicotinamide mononucleotide transporter NRK99_06035 PF03600 Citrate transporter NRK99_06035 PF02080 TrkA-C domain NRK99_06075 PF06071 Protein of unknown function (DUF933) NRK99_06075 PF01926 50S ribosome-binding GTPase NRK99_06080 PF01195 Peptidyl-tRNA hydrolase NRK99_06085 PF02872 5'-nucleotidase, C-terminal domain NRK99_06085 PF00149 Calcineurin-like phosphoesterase NRK99_06090 PF14572 Phosphoribosyl synthetase-associated domain NRK99_06090 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NRK99_06100 PF00288 GHMP kinases N terminal domain NRK99_06100 PF08544 GHMP kinases C terminal NRK99_06105 PF03550 Outer membrane lipoprotein LolB NRK99_06110 PF01488 Shikimate / quinate 5-dehydrogenase NRK99_06110 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NRK99_06110 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NRK99_06115 PF03462 PCRF domain NRK99_06115 PF00472 RF-1 domain NRK99_06120 PF13847 Methyltransferase domain NRK99_06120 PF17827 PrmC N-terminal domain NRK99_06130 PF13369 Transglutaminase-like superfamily NRK99_06135 PF00793 DAHP synthetase I family NRK99_06140 PF00375 Sodium:dicarboxylate symporter family NRK99_06145 PF01228 Glycine radical NRK99_06150 PF03167 Uracil DNA glycosylase superfamily NRK99_06165 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRK99_06170 PF01235 Sodium:alanine symporter family NRK99_06175 PF01841 Transglutaminase-like superfamily NRK99_06175 PF13559 Domain of unknown function (DUF4129) NRK99_06175 PF11992 Domain of unknown function (DUF3488) NRK99_06185 PF17863 AAA lid domain NRK99_06185 PF07726 ATPase family associated with various cellular activities (AAA) NRK99_06190 PF00144 Beta-lactamase NRK99_06195 PF00854 POT family NRK99_06200 PF03652 Holliday junction resolvase NRK99_06205 PF02622 Uncharacterized ACR, COG1678 NRK99_06210 PF00672 HAMP domain NRK99_06210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_06210 PF12729 Four helix bundle sensory module for signal transduction NRK99_06215 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NRK99_06215 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NRK99_06220 PF04452 RNA methyltransferase NRK99_06225 PF04231 Endonuclease I NRK99_06230 PF10263 SprT-like family NRK99_06235 PF02772 S-adenosylmethionine synthetase, central domain NRK99_06235 PF02773 S-adenosylmethionine synthetase, C-terminal domain NRK99_06235 PF00438 S-adenosylmethionine synthetase, N-terminal domain NRK99_06240 PF00456 Transketolase, thiamine diphosphate binding domain NRK99_06240 PF02780 Transketolase, C-terminal domain NRK99_06240 PF02779 Transketolase, pyrimidine binding domain NRK99_06250 PF01042 Endoribonuclease L-PSP NRK99_06255 PF03702 Anhydro-N-acetylmuramic acid kinase NRK99_06260 PF01476 LysM domain NRK99_06260 PF08525 Opacity-associated protein A N-terminal motif NRK99_06260 PF01551 Peptidase family M23 NRK99_06265 PF00579 tRNA synthetases class I (W and Y) NRK99_06270 PF01204 Trehalase NRK99_06280 PF01161 Phosphatidylethanolamine-binding protein NRK99_06285 PF00709 Adenylosuccinate synthetase NRK99_06290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_06290 PF03466 LysR substrate binding domain NRK99_06300 PF00155 Aminotransferase class I and II NRK99_06305 PF07690 Major Facilitator Superfamily NRK99_06310 PF03466 LysR substrate binding domain NRK99_06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_06315 PF00106 short chain dehydrogenase NRK99_06320 PF08496 Peptidase family S49 N-terminal NRK99_06320 PF01343 Peptidase family S49 NRK99_06325 PF04996 Succinylarginine dihydrolase NRK99_06330 PF01396 Topoisomerase DNA binding C4 zinc finger NRK99_06330 PF01751 Toprim domain NRK99_06330 PF01131 DNA topoisomerase NRK99_06330 PF08272 Topoisomerase I zinc-ribbon-like NRK99_06345 PF08447 PAS fold NRK99_06345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_06350 PF00728 Glycosyl hydrolase family 20, catalytic domain NRK99_06350 PF02838 Glycosyl hydrolase family 20, domain 2 NRK99_06355 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRK99_06365 PF00005 ABC transporter NRK99_06365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK99_06370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK99_06370 PF00005 ABC transporter NRK99_06375 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK99_06375 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_06380 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_06385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_06390 PF00512 His Kinase A (phospho-acceptor) domain NRK99_06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_06390 PF09308 LuxQ, periplasmic NRK99_06390 PF00072 Response regulator receiver domain NRK99_06410 PF10725 Protein of unknown function (DUF2517) NRK99_06430 PF05114 Protein of unknown function (DUF692) NRK99_06450 PF08447 PAS fold NRK99_06450 PF13426 PAS domain NRK99_06450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_06465 PF04632 Fusaric acid resistance protein family NRK99_06470 PF00994 Probable molybdopterin binding domain NRK99_06470 PF03454 MoeA C-terminal region (domain IV) NRK99_06470 PF03453 MoeA N-terminal region (domain I and II) NRK99_06475 PF12804 MobA-like NTP transferase domain NRK99_06480 PF00005 ABC transporter NRK99_06485 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_06490 PF12849 PBP superfamily domain NRK99_06495 PF02954 Bacterial regulatory protein, Fis family NRK99_06495 PF00158 Sigma-54 interaction domain NRK99_06495 PF00072 Response regulator receiver domain NRK99_06500 PF00989 PAS fold NRK99_06500 PF00512 His Kinase A (phospho-acceptor) domain NRK99_06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_06510 PF02634 FdhD/NarQ family NRK99_06550 PF00384 Molybdopterin oxidoreductase NRK99_06550 PF12838 4Fe-4S dicluster domain NRK99_06550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK99_06550 PF00384 Molybdopterin oxidoreductase NRK99_06550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK99_06550 PF12838 4Fe-4S dicluster domain NRK99_06550 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRK99_06550 PF01568 Molydopterin dinucleotide binding domain NRK99_06550 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRK99_06550 PF01568 Molydopterin dinucleotide binding domain NRK99_06555 PF13247 4Fe-4S dicluster domain NRK99_06565 PF00390 Malic enzyme, N-terminal domain NRK99_06565 PF03949 Malic enzyme, NAD binding domain NRK99_06580 PF00860 Permease family NRK99_06585 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_06590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_06590 PF00672 HAMP domain NRK99_06600 PF10282 Lactonase, 7-bladed beta-propeller NRK99_06610 PF00924 Mechanosensitive ion channel NRK99_06610 PF12795 Mechanosensitive ion channel porin domain NRK99_06610 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRK99_06615 PF02887 Pyruvate kinase, alpha/beta domain NRK99_06615 PF00224 Pyruvate kinase, barrel domain NRK99_06625 PF04389 Peptidase family M28 NRK99_06625 PF04151 Bacterial pre-peptidase C-terminal domain NRK99_06630 PF00999 Sodium/hydrogen exchanger family NRK99_06630 PF02254 TrkA-N domain NRK99_06640 PF04381 Putative exonuclease, RdgC NRK99_06650 PF12320 Type 5 capsule protein repressor C-terminal domain NRK99_06650 PF00149 Calcineurin-like phosphoesterase NRK99_06665 PF01292 Prokaryotic cytochrome b561 NRK99_06670 PF00072 Response regulator receiver domain NRK99_06670 PF00990 Diguanylate cyclase, GGDEF domain NRK99_06675 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRK99_06680 PF00391 PEP-utilising enzyme, mobile domain NRK99_06680 PF05524 PEP-utilising enzyme, N-terminal NRK99_06680 PF02896 PEP-utilising enzyme, TIM barrel domain NRK99_06685 PF00381 PTS HPr component phosphorylation site NRK99_06690 PF00291 Pyridoxal-phosphate dependent enzyme NRK99_06695 PF00004 ATPase family associated with various cellular activities (AAA) NRK99_06695 PF07724 AAA domain (Cdc48 subfamily) NRK99_06695 PF17871 AAA lid domain NRK99_06695 PF02861 Clp amino terminal domain, pathogenicity island component NRK99_06695 PF10431 C-terminal, D2-small domain, of ClpB protein NRK99_06705 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRK99_06705 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRK99_06710 PF00672 HAMP domain NRK99_06710 PF01966 HD domain NRK99_06715 PF01980 tRNA-methyltransferase O NRK99_06715 PF18389 TrmO C-terminal domain NRK99_06735 PF00005 ABC transporter NRK99_06735 PF00664 ABC transporter transmembrane region NRK99_06740 PF00664 ABC transporter transmembrane region NRK99_06740 PF00005 ABC transporter NRK99_06755 PF00072 Response regulator receiver domain NRK99_06755 PF00486 Transcriptional regulatory protein, C terminal NRK99_06765 PF03737 Aldolase/RraA NRK99_06780 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NRK99_06785 PF00588 SpoU rRNA Methylase family NRK99_06790 PF00742 Homoserine dehydrogenase NRK99_06790 PF00696 Amino acid kinase family NRK99_06790 PF03447 Homoserine dehydrogenase, NAD binding domain NRK99_06790 PF01842 ACT domain NRK99_06790 PF13840 ACT domain NRK99_06795 PF08544 GHMP kinases C terminal NRK99_06795 PF00288 GHMP kinases N terminal domain NRK99_06800 PF14821 Threonine synthase N terminus NRK99_06800 PF00291 Pyridoxal-phosphate dependent enzyme NRK99_06805 PF13474 SnoaL-like domain NRK99_06820 PF00005 ABC transporter NRK99_06820 PF12848 ABC transporter NRK99_06850 PF01048 Phosphorylase superfamily NRK99_06870 PF00072 Response regulator receiver domain NRK99_06870 PF01627 Hpt domain NRK99_06870 PF00512 His Kinase A (phospho-acceptor) domain NRK99_06870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_06870 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_06870 PF00989 PAS fold NRK99_06875 PF00990 Diguanylate cyclase, GGDEF domain NRK99_06875 PF00563 EAL domain NRK99_06875 PF00360 Phytochrome region NRK99_06875 PF01590 GAF domain NRK99_06880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK99_06880 PF00512 His Kinase A (phospho-acceptor) domain NRK99_06880 PF00072 Response regulator receiver domain NRK99_06880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_06880 PF01627 Hpt domain NRK99_06880 PF00672 HAMP domain NRK99_06885 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NRK99_06890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK99_06890 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRK99_06895 PF02690 Na+/Pi-cotransporter NRK99_06905 PF13520 Amino acid permease NRK99_06915 PF00324 Amino acid permease NRK99_06925 PF00202 Aminotransferase class-III NRK99_06930 PF00171 Aldehyde dehydrogenase family NRK99_06935 PF07883 Cupin domain NRK99_06935 PF01381 Helix-turn-helix NRK99_06940 PF01266 FAD dependent oxidoreductase NRK99_06955 PF00816 H-NS histone family NRK99_06960 PF00793 DAHP synthetase I family NRK99_06965 PF04954 Siderophore-interacting protein NRK99_06965 PF08021 Siderophore-interacting FAD-binding domain NRK99_06970 PF02321 Outer membrane efflux protein NRK99_06975 PF00005 ABC transporter NRK99_06975 PF02687 FtsX-like permease family NRK99_06975 PF12704 MacB-like periplasmic core domain NRK99_06980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_06990 PF02833 DHHA2 domain NRK99_06990 PF01368 DHH family NRK99_06995 PF02463 RecF/RecN/SMC N terminal domain NRK99_07000 PF01513 ATP-NAD kinase NRK99_07005 PF01025 GrpE NRK99_07010 PF00012 Hsp70 protein NRK99_07015 PF00226 DnaJ domain NRK99_07015 PF01556 DnaJ C terminal domain NRK99_07015 PF00684 DnaJ central domain NRK99_07020 PF11471 Maltoporin periplasmic N-terminal extension NRK99_07020 PF02264 LamB porin NRK99_07025 PF00294 pfkB family carbohydrate kinase NRK99_07030 PF02378 Phosphotransferase system, EIIC NRK99_07030 PF00367 phosphotransferase system, EIIB NRK99_07035 PF08244 Glycosyl hydrolases family 32 C terminal NRK99_07035 PF00251 Glycosyl hydrolases family 32 N-terminal domain NRK99_07040 PF13407 Periplasmic binding protein domain NRK99_07040 PF00356 Bacterial regulatory proteins, lacI family NRK99_07045 PF02308 MgtC family NRK99_07060 PF01022 Bacterial regulatory protein, arsR family NRK99_07065 PF04143 Sulphur transport NRK99_07080 PF00873 AcrB/AcrD/AcrF family NRK99_07085 PF00990 Diguanylate cyclase, GGDEF domain NRK99_07085 PF03707 Bacterial signalling protein N terminal repeat NRK99_07085 PF00563 EAL domain NRK99_07090 PF03099 Biotin/lipoate A/B protein ligase family NRK99_07090 PF10437 Bacterial lipoate protein ligase C-terminus NRK99_07105 PF00873 AcrB/AcrD/AcrF family NRK99_07110 PF00529 HlyD membrane-fusion protein of T1SS NRK99_07110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_07125 PF00873 AcrB/AcrD/AcrF family NRK99_07130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_07135 PF03372 Endonuclease/Exonuclease/phosphatase family NRK99_07150 PF00011 Hsp20/alpha crystallin family NRK99_07160 PF02424 ApbE family NRK99_07165 PF00127 Copper binding proteins, plastocyanin/azurin family NRK99_07185 PF01156 Inosine-uridine preferring nucleoside hydrolase NRK99_07195 PF00034 Cytochrome c NRK99_07195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRK99_07205 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRK99_07205 PF06481 COX Aromatic Rich Motif NRK99_07210 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRK99_07215 PF00510 Cytochrome c oxidase subunit III NRK99_07220 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NRK99_07225 PF01040 UbiA prenyltransferase family NRK99_07230 PF07690 Major Facilitator Superfamily NRK99_07240 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRK99_07245 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_07250 PF00005 ABC transporter NRK99_07255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRK99_07265 PF07662 Na+ dependent nucleoside transporter C-terminus NRK99_07265 PF01773 Na+ dependent nucleoside transporter N-terminus NRK99_07265 PF07670 Nucleoside recognition NRK99_07285 PF13657 HipA N-terminal domain NRK99_07285 PF07804 HipA-like C-terminal domain NRK99_07290 PF01381 Helix-turn-helix NRK99_07295 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRK99_07305 PF10137 Predicted nucleotide-binding protein containing TIR-like domain NRK99_07310 PF00290 Tryptophan synthase alpha chain NRK99_07315 PF00291 Pyridoxal-phosphate dependent enzyme NRK99_07320 PF00218 Indole-3-glycerol phosphate synthase NRK99_07320 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NRK99_07325 PF02885 Glycosyl transferase family, helical bundle domain NRK99_07325 PF00591 Glycosyl transferase family, a/b domain NRK99_07330 PF00117 Glutamine amidotransferase class-I NRK99_07330 PF02885 Glycosyl transferase family, helical bundle domain NRK99_07330 PF00591 Glycosyl transferase family, a/b domain NRK99_07335 PF04715 Anthranilate synthase component I, N terminal region NRK99_07335 PF00425 chorismate binding enzyme NRK99_07340 PF02811 PHP domain NRK99_07345 PF01300 Telomere recombination NRK99_07350 PF02616 Segregation and condensation protein ScpA NRK99_07355 PF04079 Segregation and condensation complex subunit ScpB NRK99_07360 PF00849 RNA pseudouridylate synthase NRK99_07360 PF01479 S4 domain NRK99_07385 PF08361 MAATS-type transcriptional repressor, C-terminal region NRK99_07385 PF00440 Bacterial regulatory proteins, tetR family NRK99_07390 PF00529 HlyD membrane-fusion protein of T1SS NRK99_07390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_07395 PF00873 AcrB/AcrD/AcrF family NRK99_07400 PF02321 Outer membrane efflux protein NRK99_07410 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRK99_07410 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRK99_07410 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRK99_07415 PF01370 NAD dependent epimerase/dehydratase family NRK99_07425 PF00534 Glycosyl transferases group 1 NRK99_07435 PF00733 Asparagine synthase NRK99_07435 PF13537 Glutamine amidotransferase domain NRK99_07440 PF13477 Glycosyl transferase 4-like NRK99_07440 PF00534 Glycosyl transferases group 1 NRK99_07445 PF01370 NAD dependent epimerase/dehydratase family NRK99_07450 PF02397 Bacterial sugar transferase NRK99_07455 PF02719 Polysaccharide biosynthesis protein NRK99_07460 PF16363 GDP-mannose 4,6 dehydratase NRK99_07465 PF04321 RmlD substrate binding domain NRK99_07470 PF00483 Nucleotidyl transferase NRK99_07475 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NRK99_07480 PF02706 Chain length determinant protein NRK99_07490 PF04337 Protein of unknown function, DUF480 NRK99_07495 PF00271 Helicase conserved C-terminal domain NRK99_07495 PF00176 SNF2 family N-terminal domain NRK99_07495 PF04434 SWIM zinc finger NRK99_07500 PF05472 DNA replication terminus site-binding protein (Ter protein) NRK99_07510 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NRK99_07515 PF00676 Dehydrogenase E1 component NRK99_07520 PF02779 Transketolase, pyrimidine binding domain NRK99_07520 PF02780 Transketolase, C-terminal domain NRK99_07525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRK99_07525 PF00364 Biotin-requiring enzyme NRK99_07525 PF02817 e3 binding domain NRK99_07530 PF00313 'Cold-shock' DNA-binding domain NRK99_07555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_07560 PF00892 EamA-like transporter family NRK99_07565 PF00455 DeoR C terminal sensor domain NRK99_07565 PF08220 DeoR-like helix-turn-helix domain NRK99_07570 PF02901 Pyruvate formate lyase-like NRK99_07570 PF01228 Glycine radical NRK99_07575 PF04055 Radical SAM superfamily NRK99_07580 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRK99_07590 PF11871 Domain of unknown function (DUF3391) NRK99_07590 PF01966 HD domain NRK99_07595 PF01479 S4 domain NRK99_07595 PF00849 RNA pseudouridylate synthase NRK99_07605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_07610 PF12850 Calcineurin-like phosphoesterase superfamily domain NRK99_07625 PF13144 Chaperone for flagella basal body P-ring formation NRK99_07630 PF00072 Response regulator receiver domain NRK99_07630 PF01584 CheW-like domain NRK99_07635 PF01739 CheR methyltransferase, SAM binding domain NRK99_07635 PF03705 CheR methyltransferase, all-alpha domain NRK99_07640 PF00460 Flagella basal body rod protein NRK99_07645 PF00460 Flagella basal body rod protein NRK99_07645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_07655 PF07559 Flagellar basal body protein FlaE NRK99_07655 PF00460 Flagella basal body rod protein NRK99_07655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_07660 PF00460 Flagella basal body rod protein NRK99_07660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_07665 PF00460 Flagella basal body rod protein NRK99_07665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_07670 PF02107 Flagellar L-ring protein NRK99_07675 PF02119 Flagellar P-ring protein NRK99_07680 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NRK99_07680 PF10135 Rod binding protein NRK99_07685 PF00460 Flagella basal body rod protein NRK99_07685 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_07690 PF00669 Bacterial flagellin N-terminal helical region NRK99_07695 PF00571 CBS domain NRK99_07695 PF01769 Divalent cation transporter NRK99_07695 PF03448 MgtE intracellular N domain NRK99_07700 PF02541 Ppx/GppA phosphatase family NRK99_07705 PF17941 Polyphosphate kinase C-terminal domain 1 NRK99_07705 PF02503 Polyphosphate kinase middle domain NRK99_07705 PF13090 Polyphosphate kinase C-terminal domain 2 NRK99_07705 PF13089 Polyphosphate kinase N-terminal domain NRK99_07710 PF01842 ACT domain NRK99_07720 PF06490 Flagellar regulatory protein FleQ NRK99_07720 PF02954 Bacterial regulatory protein, Fis family NRK99_07720 PF00158 Sigma-54 interaction domain NRK99_07725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_07725 PF00512 His Kinase A (phospho-acceptor) domain NRK99_07725 PF13188 PAS domain NRK99_07730 PF02954 Bacterial regulatory protein, Fis family NRK99_07730 PF00072 Response regulator receiver domain NRK99_07730 PF00158 Sigma-54 interaction domain NRK99_07735 PF01784 NIF3 (NGG1p interacting factor 3) NRK99_07740 PF00551 Formyl transferase NRK99_07745 PF00586 AIR synthase related protein, N-terminal domain NRK99_07745 PF02769 AIR synthase related protein, C-terminal domain NRK99_07760 PF00308 Bacterial dnaA protein NRK99_07765 PF00463 Isocitrate lyase family NRK99_07770 PF01274 Malate synthase NRK99_07785 PF14437 MafB19-like deaminase NRK99_07790 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_07795 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_07800 PF00005 ABC transporter NRK99_07805 PF01895 PhoU domain NRK99_07810 PF00571 CBS domain NRK99_07810 PF03471 Transporter associated domain NRK99_07810 PF01595 Cyclin M transmembrane N-terminal domain NRK99_07825 PF13520 Amino acid permease NRK99_07830 PF04116 Fatty acid hydroxylase superfamily NRK99_07845 PF00005 ABC transporter NRK99_07850 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_07855 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_07860 PF07690 Major Facilitator Superfamily NRK99_07865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_07865 PF07730 Histidine kinase NRK99_07865 PF05231 MASE1 NRK99_07870 PF00196 Bacterial regulatory proteins, luxR family NRK99_07870 PF00072 Response regulator receiver domain NRK99_07875 PF01272 Transcription elongation factor, GreA/GreB, C-term NRK99_07875 PF14760 Rnk N-terminus NRK99_07890 PF00245 Alkaline phosphatase NRK99_07895 PF00245 Alkaline phosphatase NRK99_07900 PF01926 50S ribosome-binding GTPase NRK99_07905 PF07690 Major Facilitator Superfamily NRK99_07915 PF00850 Histone deacetylase domain NRK99_07925 PF06733 DEAD_2 NRK99_07925 PF13307 Helicase C-terminal domain NRK99_07930 PF13609 Gram-negative porin NRK99_07940 PF00155 Aminotransferase class I and II NRK99_07945 PF05872 Bacterial protein of unknown function (DUF853) NRK99_07960 PF03772 Competence protein NRK99_07960 PF00753 Metallo-beta-lactamase superfamily NRK99_07965 PF00664 ABC transporter transmembrane region NRK99_07965 PF00005 ABC transporter NRK99_07970 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NRK99_07975 PF03966 Trm112p-like protein NRK99_07980 PF02348 Cytidylyltransferase NRK99_07985 PF00196 Bacterial regulatory proteins, luxR family NRK99_07985 PF00072 Response regulator receiver domain NRK99_07990 PF01541 GIY-YIG catalytic domain NRK99_07990 PF08459 UvrC Helix-hairpin-helix N-terminal NRK99_07990 PF02151 UvrB/uvrC motif NRK99_07995 PF01066 CDP-alcohol phosphatidyltransferase NRK99_08020 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB NRK99_08025 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRK99_08045 PF00037 4Fe-4S binding domain NRK99_08045 PF13247 4Fe-4S dicluster domain NRK99_08050 PF03916 Polysulphide reductase, NrfD NRK99_08055 PF00149 Calcineurin-like phosphoesterase NRK99_08065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRK99_08070 PF01406 tRNA synthetases class I (C) catalytic domain NRK99_08070 PF09190 DALR domain NRK99_08075 PF07179 SseB protein N-terminal domain NRK99_08075 PF14581 SseB protein C-terminal domain NRK99_08085 PF00990 Diguanylate cyclase, GGDEF domain NRK99_08085 PF13185 GAF domain NRK99_08115 PF01169 Uncharacterized protein family UPF0016 NRK99_08120 PF01253 Translation initiation factor SUI1 NRK99_08130 PF07670 Nucleoside recognition NRK99_08130 PF02421 Ferrous iron transport protein B NRK99_08130 PF07664 Ferrous iron transport protein B C terminus NRK99_08145 PF00483 Nucleotidyl transferase NRK99_08150 PF00437 Type II/IV secretion system protein NRK99_08160 PF00989 PAS fold NRK99_08160 PF00512 His Kinase A (phospho-acceptor) domain NRK99_08160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_08160 PF00072 Response regulator receiver domain NRK99_08160 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_08160 PF01627 Hpt domain NRK99_08165 PF01032 FecCD transport family NRK99_08170 PF00005 ABC transporter NRK99_08175 PF00793 DAHP synthetase I family NRK99_08180 PF01219 Prokaryotic diacylglycerol kinase NRK99_08185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK99_08185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK99_08185 PF01842 ACT domain NRK99_08190 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NRK99_08195 PF01812 5-formyltetrahydrofolate cyclo-ligase family NRK99_08205 PF05173 Dihydrodipicolinate reductase, C-terminus NRK99_08205 PF01113 Dihydrodipicolinate reductase, N-terminus NRK99_08210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NRK99_08210 PF00117 Glutamine amidotransferase class-I NRK99_08215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRK99_08215 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NRK99_08215 PF02142 MGS-like domain NRK99_08220 PF00682 HMGL-like NRK99_08220 PF08502 LeuA allosteric (dimerisation) domain NRK99_08230 PF13533 Biotin-lipoyl like NRK99_08235 PF07690 Major Facilitator Superfamily NRK99_08240 PF07759 Protein of unknown function (DUF1615) NRK99_08250 PF08378 Nuclease-related domain NRK99_08280 PF13302 Acetyltransferase (GNAT) domain NRK99_08285 PF00271 Helicase conserved C-terminal domain NRK99_08285 PF00270 DEAD/DEAH box helicase NRK99_08295 PF14521 Lysine-specific metallo-endopeptidase NRK99_08310 PF00376 MerR family regulatory protein NRK99_08310 PF09278 MerR, DNA binding NRK99_08325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRK99_08325 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_08330 PF01493 GXGXG motif NRK99_08330 PF01645 Conserved region in glutamate synthase NRK99_08330 PF04898 Glutamate synthase central domain NRK99_08330 PF00310 Glutamine amidotransferases class-II NRK99_08335 PF16199 Radical_SAM C-terminal domain NRK99_08335 PF04055 Radical SAM superfamily NRK99_08340 PF00664 ABC transporter transmembrane region NRK99_08340 PF03412 Peptidase C39 family NRK99_08340 PF00005 ABC transporter NRK99_08380 PF00324 Amino acid permease NRK99_08390 PF03618 Kinase/pyrophosphorylase NRK99_08395 PF00391 PEP-utilising enzyme, mobile domain NRK99_08395 PF02896 PEP-utilising enzyme, TIM barrel domain NRK99_08395 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRK99_08405 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRK99_08405 PF14310 Fibronectin type III-like domain NRK99_08405 PF00933 Glycosyl hydrolase family 3 N terminal domain NRK99_08415 PF00082 Subtilase family NRK99_08415 PF01483 Proprotein convertase P-domain NRK99_08435 PF03180 NLPA lipoprotein NRK99_08440 PF01569 PAP2 superfamily NRK99_08445 PF11890 Domain of unknown function (DUF3410) NRK99_08445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK99_08445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK99_08450 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRK99_08450 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRK99_08460 PF01416 tRNA pseudouridine synthase NRK99_08465 PF17848 Acetyl-coA carboxylase zinc finger domain NRK99_08465 PF01039 Carboxyl transferase domain NRK99_08470 PF08245 Mur ligase middle domain NRK99_08470 PF02875 Mur ligase family, glutamate ligase domain NRK99_08475 PF05036 Sporulation related domain NRK99_08480 PF04358 DsrC like protein NRK99_08485 PF12805 FUSC-like inner membrane protein yccS NRK99_08490 PF01027 Inhibitor of apoptosis-promoting Bax1 NRK99_08510 PF02463 RecF/RecN/SMC N terminal domain NRK99_08510 PF06470 SMC proteins Flexible Hinge Domain NRK99_08515 PF13361 UvrD-like helicase C-terminal domain NRK99_08515 PF00580 UvrD/REP helicase N-terminal domain NRK99_08535 PF13361 UvrD-like helicase C-terminal domain NRK99_08535 PF00580 UvrD/REP helicase N-terminal domain NRK99_08535 PF12462 DNA helicase IV / RNA helicase N terminal NRK99_08575 PF04002 RadC-like JAB domain NRK99_08605 PF05930 Prophage CP4-57 regulatory protein (AlpA) NRK99_08620 PF05638 Type VI secretion system effector, Hcp NRK99_08625 PF04717 Type VI secretion system, phage-baseplate injector NRK99_08635 PF05593 RHS Repeat NRK99_08635 PF05488 PAAR motif NRK99_08655 PF00589 Phage integrase family NRK99_08655 PF13356 Arm DNA-binding domain NRK99_08665 PF03496 ADP-ribosyltransferase exoenzyme NRK99_08670 PF01312 FlhB HrpN YscU SpaS Family NRK99_08675 PF01311 Bacterial export proteins, family 1 NRK99_08680 PF01313 Bacterial export proteins, family 3 NRK99_08685 PF00813 FliP family NRK99_08690 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRK99_08695 PF02120 Flagellar hook-length control protein FliK NRK99_08705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK99_08705 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRK99_08705 PF18269 T3SS EscN ATPase C-terminal domain NRK99_08710 PF07201 HrpJ-like domain NRK99_08715 PF09059 TyeA NRK99_08735 PF00771 FHIPEP family NRK99_08740 PF09621 Type III secretion system regulator (LcrR) NRK99_08750 PF04792 V antigen (LcrV) protein NRK99_08755 PF07720 Tetratricopeptide repeat NRK99_08760 PF04888 Secretion system effector C (SseC) like family NRK99_08765 PF05844 YopD protein NRK99_08770 PF05932 Tir chaperone protein (CesT) family NRK99_08785 PF12833 Helix-turn-helix domain NRK99_08790 PF16806 Antiactivator protein ExsD NRK99_08795 PF05932 Tir chaperone protein (CesT) family NRK99_08800 PF03958 Bacterial type II/III secretion system short domain NRK99_08800 PF00263 Bacterial type II and III secretion system protein NRK99_08805 PF16697 Inner membrane component of T3SS, cytoplasmic domain NRK99_08805 PF16693 Inner membrane component of T3SS, periplasmic domain NRK99_08815 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF NRK99_08820 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) NRK99_08825 PF09025 YopR, type III needle-polymerisation regulator NRK99_08830 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI NRK99_08835 PF01514 Secretory protein of YscJ/FliF family NRK99_08845 PF02108 Flagellar assembly protein FliH NRK99_08860 PF08019 Phosphoethanolamine transferase EptA/EptB NRK99_08860 PF00884 Sulfatase NRK99_08865 PF03706 Lysylphosphatidylglycerol synthase TM region NRK99_08865 PF09924 Uncharacterised conserved protein (DUF2156) NRK99_08875 PF08447 PAS fold NRK99_08875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_08880 PF00990 Diguanylate cyclase, GGDEF domain NRK99_08880 PF13426 PAS domain NRK99_08880 PF00563 EAL domain NRK99_08885 PF00849 RNA pseudouridylate synthase NRK99_08895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK99_08900 PF04209 homogentisate 1,2-dioxygenase NRK99_08910 PF02798 Glutathione S-transferase, N-terminal domain NRK99_08910 PF14497 Glutathione S-transferase, C-terminal domain NRK99_08930 PF13537 Glutamine amidotransferase domain NRK99_08930 PF00733 Asparagine synthase NRK99_08940 PF00999 Sodium/hydrogen exchanger family NRK99_08940 PF02254 TrkA-N domain NRK99_08945 PF13344 Haloacid dehalogenase-like hydrolase NRK99_08950 PF00962 Adenosine/AMP deaminase NRK99_08955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRK99_08960 PF03741 Integral membrane protein TerC family NRK99_08960 PF03471 Transporter associated domain NRK99_08970 PF02913 FAD linked oxidases, C-terminal domain NRK99_08970 PF13183 4Fe-4S dicluster domain NRK99_08970 PF01565 FAD binding domain NRK99_08980 PF03061 Thioesterase superfamily NRK99_08985 PF00270 DEAD/DEAH box helicase NRK99_08985 PF03880 DbpA RNA binding domain NRK99_08985 PF00271 Helicase conserved C-terminal domain NRK99_08990 PF03553 Na+/H+ antiporter family NRK99_08990 PF13726 Na+-H+ antiporter family NRK99_08995 PF00929 Exonuclease NRK99_09000 PF00672 HAMP domain NRK99_09000 PF12729 Four helix bundle sensory module for signal transduction NRK99_09000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_09005 PF18393 MotY N-terminal domain NRK99_09005 PF00691 OmpA family NRK99_09010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK99_09015 PF00730 HhH-GPD superfamily base excision DNA repair protein NRK99_09015 PF00633 Helix-hairpin-helix motif NRK99_09015 PF10576 Iron-sulfur binding domain of endonuclease III NRK99_09020 PF02508 Rnf-Nqr subunit, membrane protein NRK99_09025 PF04205 FMN-binding domain NRK99_09030 PF03116 NQR2, RnfD, RnfE family NRK99_09035 PF10531 SLBB domain NRK99_09035 PF12838 4Fe-4S dicluster domain NRK99_09035 PF13375 RnfC Barrel sandwich hybrid domain NRK99_09035 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRK99_09040 PF04060 Putative Fe-S cluster NRK99_09045 PF02508 Rnf-Nqr subunit, membrane protein NRK99_09050 PF00892 EamA-like transporter family NRK99_09055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_09055 PF08447 PAS fold NRK99_09055 PF13426 PAS domain NRK99_09065 PF07055 Enoyl reductase FAD binding domain NRK99_09065 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRK99_09065 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRK99_09070 PF03606 C4-dicarboxylate anaerobic carrier NRK99_09075 PF12795 Mechanosensitive ion channel porin domain NRK99_09075 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRK99_09075 PF00924 Mechanosensitive ion channel NRK99_09080 PF00155 Aminotransferase class I and II NRK99_09090 PF00462 Glutaredoxin NRK99_09095 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NRK99_09100 PF00271 Helicase conserved C-terminal domain NRK99_09100 PF04851 Type III restriction enzyme, res subunit NRK99_09105 PF00529 HlyD membrane-fusion protein of T1SS NRK99_09105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_09110 PF11742 Protein of unknown function (DUF3302) NRK99_09115 PF02554 Carbon starvation protein CstA NRK99_09120 PF00072 Response regulator receiver domain NRK99_09120 PF04397 LytTr DNA-binding domain NRK99_09125 PF06580 Histidine kinase NRK99_09125 PF07694 5TMR of 5TMR-LYT NRK99_09130 PF01966 HD domain NRK99_09135 PF00171 Aldehyde dehydrogenase family NRK99_09135 PF00465 Iron-containing alcohol dehydrogenase NRK99_09145 PF01914 MarC family integral membrane protein NRK99_09150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_09155 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_09160 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_09160 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK99_09165 PF00005 ABC transporter NRK99_09165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK99_09170 PF00005 ABC transporter NRK99_09170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK99_09175 PF03741 Integral membrane protein TerC family NRK99_09180 PF00842 Alanine racemase, C-terminal domain NRK99_09180 PF01168 Alanine racemase, N-terminal domain NRK99_09190 PF00375 Sodium:dicarboxylate symporter family NRK99_09205 PF01979 Amidohydrolase family NRK99_09215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_09215 PF00672 HAMP domain NRK99_09220 PF01230 HIT domain NRK99_09255 PF07549 SecD/SecF GG Motif NRK99_09255 PF02355 Protein export membrane protein NRK99_09255 PF13721 SecD export protein N-terminal TM region NRK99_09260 PF02355 Protein export membrane protein NRK99_09260 PF07549 SecD/SecF GG Motif NRK99_09265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_09265 PF08447 PAS fold NRK99_09265 PF13426 PAS domain NRK99_09275 PF05661 Protein of unknown function (DUF808) NRK99_09280 PF08439 Oligopeptidase F NRK99_09280 PF01432 Peptidase family M3 NRK99_09285 PF08439 Oligopeptidase F NRK99_09285 PF01432 Peptidase family M3 NRK99_09290 PF00860 Permease family NRK99_09295 PF05728 Uncharacterised protein family (UPF0227) NRK99_09300 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_09320 PF01906 Putative heavy-metal-binding NRK99_09330 PF02016 LD-carboxypeptidase N-terminal domain NRK99_09330 PF17676 LD-carboxypeptidase C-terminal domain NRK99_09335 PF00884 Sulfatase NRK99_09345 PF00696 Amino acid kinase family NRK99_09345 PF01842 ACT domain NRK99_09350 PF00583 Acetyltransferase (GNAT) family NRK99_09350 PF00696 Amino acid kinase family NRK99_09355 PF01625 Peptide methionine sulfoxide reductase NRK99_09375 PF00561 alpha/beta hydrolase fold NRK99_09380 PF03466 LysR substrate binding domain NRK99_09380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_09385 PF02652 L-lactate permease NRK99_09390 PF02754 Cysteine-rich domain NRK99_09395 PF11870 Domain of unknown function (DUF3390) NRK99_09395 PF02589 LUD domain NRK99_09395 PF13183 4Fe-4S dicluster domain NRK99_09400 PF02589 LUD domain NRK99_09405 PF01565 FAD binding domain NRK99_09405 PF02913 FAD linked oxidases, C-terminal domain NRK99_09425 PF12704 MacB-like periplasmic core domain NRK99_09425 PF02687 FtsX-like permease family NRK99_09430 PF00005 ABC transporter NRK99_09440 PF03600 Citrate transporter NRK99_09450 PF07690 Major Facilitator Superfamily NRK99_09465 PF01593 Flavin containing amine oxidoreductase NRK99_09470 PF03239 Iron permease FTR1 family NRK99_09495 PF13533 Biotin-lipoyl like NRK99_09510 PF00916 Sulfate permease family NRK99_09510 PF01740 STAS domain NRK99_09525 PF00440 Bacterial regulatory proteins, tetR family NRK99_09535 PF01168 Alanine racemase, N-terminal domain NRK99_09535 PF00842 Alanine racemase, C-terminal domain NRK99_09540 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal NRK99_09540 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRK99_09545 PF13247 4Fe-4S dicluster domain NRK99_09550 PF03916 Polysulphide reductase, NrfD NRK99_09555 PF00374 Nickel-dependent hydrogenase NRK99_09560 PF01750 Hydrogenase maturation protease NRK99_09565 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE NRK99_09570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_09575 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_09580 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_09580 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK99_09585 PF00005 ABC transporter NRK99_09590 PF00005 ABC transporter NRK99_09595 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRK99_09605 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRK99_09610 PF00586 AIR synthase related protein, N-terminal domain NRK99_09610 PF02769 AIR synthase related protein, C-terminal domain NRK99_09615 PF01924 Hydrogenase formation hypA family NRK99_09620 PF01455 HupF/HypC family NRK99_09625 PF01300 Telomere recombination NRK99_09625 PF00708 Acylphosphatase NRK99_09625 PF17788 HypF Kae1-like domain NRK99_09625 PF07503 HypF finger NRK99_09630 PF09107 Elongation factor SelB, winged helix NRK99_09630 PF09106 Elongation factor SelB, winged helix NRK99_09630 PF09105 Elongation factor SelB, winged helix NRK99_09630 PF03144 Elongation factor Tu domain 2 NRK99_09630 PF00009 Elongation factor Tu GTP binding domain NRK99_09635 PF12390 Selenocysteine synthase N terminal NRK99_09635 PF03841 L-seryl-tRNA selenium transferase NRK99_09645 PF01750 Hydrogenase maturation protease NRK99_09650 PF07450 Formate hydrogenlyase maturation protein HycH NRK99_09655 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRK99_09660 PF12838 4Fe-4S dicluster domain NRK99_09665 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRK99_09665 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRK99_09665 PF00374 Nickel-dependent hydrogenase NRK99_09670 PF00146 NADH dehydrogenase NRK99_09675 PF00361 Proton-conducting membrane transporter NRK99_09680 PF00037 4Fe-4S binding domain NRK99_09680 PF12798 4Fe-4S binding domain NRK99_09685 PF00202 Aminotransferase class-III NRK99_09690 PF08240 Alcohol dehydrogenase GroES-like domain NRK99_09690 PF00107 Zinc-binding dehydrogenase NRK99_09695 PF13419 Haloacid dehalogenase-like hydrolase NRK99_09700 PF07690 Major Facilitator Superfamily NRK99_09710 PF02705 K+ potassium transporter NRK99_09720 PF13247 4Fe-4S dicluster domain NRK99_09720 PF12800 4Fe-4S binding domain NRK99_09735 PF00158 Sigma-54 interaction domain NRK99_09735 PF01590 GAF domain NRK99_09735 PF02954 Bacterial regulatory protein, Fis family NRK99_09740 PF02634 FdhD/NarQ family NRK99_09745 PF02132 RecR protein NRK99_09745 PF13662 Toprim domain NRK99_09750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_09750 PF00183 Hsp90 protein NRK99_09755 PF05191 Adenylate kinase, active site lid NRK99_09760 PF00762 Ferrochelatase NRK99_09765 PF01124 MAPEG family NRK99_09770 PF00294 pfkB family carbohydrate kinase NRK99_09785 PF00563 EAL domain NRK99_09785 PF00990 Diguanylate cyclase, GGDEF domain NRK99_09785 PF03707 Bacterial signalling protein N terminal repeat NRK99_09790 PF00483 Nucleotidyl transferase NRK99_09800 PF07273 Protein of unknown function (DUF1439) NRK99_09810 PF00425 chorismate binding enzyme NRK99_09815 PF13193 AMP-binding enzyme C-terminal domain NRK99_09815 PF00501 AMP-binding enzyme NRK99_09820 PF00550 Phosphopantetheine attachment site NRK99_09820 PF00857 Isochorismatase family NRK99_09825 PF00501 AMP-binding enzyme NRK99_09825 PF13193 AMP-binding enzyme C-terminal domain NRK99_09825 PF00668 Condensation domain NRK99_09825 PF00550 Phosphopantetheine attachment site NRK99_09825 PF00975 Thioesterase domain NRK99_09835 PF00501 AMP-binding enzyme NRK99_09835 PF13193 AMP-binding enzyme C-terminal domain NRK99_09835 PF00668 Condensation domain NRK99_09835 PF07993 Male sterility protein NRK99_09835 PF00550 Phosphopantetheine attachment site NRK99_09840 PF00501 AMP-binding enzyme NRK99_09840 PF13193 AMP-binding enzyme C-terminal domain NRK99_09840 PF00668 Condensation domain NRK99_09840 PF16197 Ketoacyl-synthetase C-terminal extension NRK99_09840 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK99_09840 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK99_09840 PF08659 KR domain NRK99_09840 PF00550 Phosphopantetheine attachment site NRK99_09840 PF14765 Polyketide synthase dehydratase NRK99_09845 PF01497 Periplasmic binding protein NRK99_09850 PF01648 4'-phosphopantetheinyl transferase superfamily NRK99_09850 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NRK99_09855 PF00005 ABC transporter NRK99_09860 PF01032 FecCD transport family NRK99_09865 PF01032 FecCD transport family NRK99_09870 PF07715 TonB-dependent Receptor Plug Domain NRK99_09870 PF00593 TonB dependent receptor NRK99_09885 PF11143 Protein of unknown function (DUF2919) NRK99_09890 PF01544 CorA-like Mg2+ transporter protein NRK99_09900 PF01012 Electron transfer flavoprotein domain NRK99_09905 PF00766 Electron transfer flavoprotein FAD-binding domain NRK99_09905 PF01012 Electron transfer flavoprotein domain NRK99_09910 PF00266 Aminotransferase class-V NRK99_09915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRK99_09920 PF00793 DAHP synthetase I family NRK99_09925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_09925 PF00672 HAMP domain NRK99_09930 PF04055 Radical SAM superfamily NRK99_09935 PF13742 OB-fold nucleic acid binding domain NRK99_09935 PF02601 Exonuclease VII, large subunit NRK99_09940 PF00892 EamA-like transporter family NRK99_09945 PF02472 Biopolymer transport protein ExbD/TolR NRK99_09950 PF01618 MotA/TolQ/ExbB proton channel family NRK99_09960 PF02705 K+ potassium transporter NRK99_09965 PF00478 IMP dehydrogenase / GMP reductase domain NRK99_09965 PF00571 CBS domain NRK99_09970 PF02540 NAD synthase NRK99_09970 PF00958 GMP synthase C terminal domain NRK99_09970 PF00117 Glutamine amidotransferase class-I NRK99_09985 PF02805 Metal binding domain of Ada NRK99_09985 PF12833 Helix-turn-helix domain NRK99_09985 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRK99_09985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRK99_10005 PF05724 Thiopurine S-methyltransferase (TPMT) NRK99_10010 PF00675 Insulinase (Peptidase family M16) NRK99_10010 PF05193 Peptidase M16 inactive domain NRK99_10015 PF00300 Histidine phosphatase superfamily (branch 1) NRK99_10025 PF00892 EamA-like transporter family NRK99_10030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_10035 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NRK99_10040 PF00271 Helicase conserved C-terminal domain NRK99_10040 PF00270 DEAD/DEAH box helicase NRK99_10040 PF03461 TRCF domain NRK99_10040 PF02559 CarD-like/TRCF domain NRK99_10040 PF17757 UvrB interaction domain NRK99_10050 PF12704 MacB-like periplasmic core domain NRK99_10050 PF02687 FtsX-like permease family NRK99_10055 PF00005 ABC transporter NRK99_10060 PF12704 MacB-like periplasmic core domain NRK99_10060 PF02687 FtsX-like permease family NRK99_10075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK99_10075 PF05698 Bacterial trigger factor protein (TF) C-terminus NRK99_10075 PF05697 Bacterial trigger factor protein (TF) NRK99_10080 PF00574 Clp protease NRK99_10085 PF07724 AAA domain (Cdc48 subfamily) NRK99_10085 PF10431 C-terminal, D2-small domain, of ClpB protein NRK99_10085 PF06689 ClpX C4-type zinc finger NRK99_10090 PF00004 ATPase family associated with various cellular activities (AAA) NRK99_10090 PF05362 Lon protease (S16) C-terminal proteolytic domain NRK99_10090 PF02190 ATP-dependent protease La (LON) substrate-binding domain NRK99_10095 PF00216 Bacterial DNA-binding protein NRK99_10105 PF00005 ABC transporter NRK99_10105 PF12848 ABC transporter NRK99_10110 PF00474 Sodium:solute symporter family NRK99_10115 PF04341 Protein of unknown function, DUF485 NRK99_10130 PF00378 Enoyl-CoA hydratase/isomerase NRK99_10135 PF01235 Sodium:alanine symporter family NRK99_10145 PF06167 Glucose-regulated metallo-peptidase M90 NRK99_10150 PF01184 GPR1/FUN34/yaaH family NRK99_10165 PF00376 MerR family regulatory protein NRK99_10165 PF09278 MerR, DNA binding NRK99_10170 PF00682 HMGL-like NRK99_10175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRK99_10175 PF00364 Biotin-requiring enzyme NRK99_10175 PF00289 Biotin carboxylase, N-terminal domain NRK99_10175 PF02785 Biotin carboxylase C-terminal domain NRK99_10180 PF00378 Enoyl-CoA hydratase/isomerase NRK99_10185 PF01039 Carboxyl transferase domain NRK99_10190 PF02770 Acyl-CoA dehydrogenase, middle domain NRK99_10190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK99_10190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK99_10195 PF00171 Aldehyde dehydrogenase family NRK99_10200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK99_10200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK99_10200 PF02770 Acyl-CoA dehydrogenase, middle domain NRK99_10205 PF00378 Enoyl-CoA hydratase/isomerase NRK99_10210 PF00378 Enoyl-CoA hydratase/isomerase NRK99_10215 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRK99_10215 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRK99_10225 PF13520 Amino acid permease NRK99_10230 PF01925 Sulfite exporter TauE/SafE NRK99_10240 PF03466 LysR substrate binding domain NRK99_10240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_10245 PF12146 Serine aminopeptidase, S33 NRK99_10250 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NRK99_10250 PF07676 WD40-like Beta Propeller Repeat NRK99_10250 PF00326 Prolyl oligopeptidase family NRK99_10260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_10260 PF03466 LysR substrate binding domain NRK99_10265 PF00248 Aldo/keto reductase family NRK99_10270 PF12706 Beta-lactamase superfamily domain NRK99_10275 PF00672 HAMP domain NRK99_10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_10275 PF00512 His Kinase A (phospho-acceptor) domain NRK99_10275 PF01627 Hpt domain NRK99_10275 PF00072 Response regulator receiver domain NRK99_10275 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK99_10305 PF00072 Response regulator receiver domain NRK99_10305 PF00211 Adenylate and Guanylate cyclase catalytic domain NRK99_10310 PF00534 Glycosyl transferases group 1 NRK99_10315 PF02397 Bacterial sugar transferase NRK99_10320 PF00535 Glycosyl transferase family 2 NRK99_10320 PF07238 PilZ domain NRK99_10320 PF03552 Cellulose synthase NRK99_10325 PF00534 Glycosyl transferases group 1 NRK99_10325 PF13439 Glycosyltransferase Family 4 NRK99_10395 PF00534 Glycosyl transferases group 1 NRK99_10400 PF00862 Sucrose synthase NRK99_10400 PF00534 Glycosyl transferases group 1 NRK99_10405 PF03466 LysR substrate binding domain NRK99_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_10410 PF00232 Glycosyl hydrolase family 1 NRK99_10415 PF01966 HD domain NRK99_10425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_10425 PF03466 LysR substrate binding domain NRK99_10430 PF01261 Xylose isomerase-like TIM barrel NRK99_10435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRK99_10435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRK99_10440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_10440 PF03466 LysR substrate binding domain NRK99_10450 PF03279 Bacterial lipid A biosynthesis acyltransferase NRK99_10455 PF03279 Bacterial lipid A biosynthesis acyltransferase NRK99_10470 PF00990 Diguanylate cyclase, GGDEF domain NRK99_10480 PF00136 DNA polymerase family B NRK99_10480 PF03104 DNA polymerase family B, exonuclease domain NRK99_10510 PF01554 MatE NRK99_10515 PF06786 Uncharacterised protein family (UPF0253) NRK99_10520 PF00677 Lumazine binding domain NRK99_10530 PF13419 Haloacid dehalogenase-like hydrolase NRK99_10535 PF01370 NAD dependent epimerase/dehydratase family NRK99_10535 PF02222 ATP-grasp domain NRK99_10540 PF00892 EamA-like transporter family NRK99_10545 PF02525 Flavodoxin-like fold NRK99_10570 PF17783 CvfB-like winged helix domain NRK99_10570 PF13509 S1 domain NRK99_10580 PF04269 Protein of unknown function, DUF440 NRK99_10590 PF00912 Transglycosylase NRK99_10595 PF04269 Protein of unknown function, DUF440 NRK99_10600 PF03776 Septum formation topological specificity factor MinE NRK99_10605 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NRK99_10610 PF05209 Septum formation inhibitor MinC, N-terminal domain NRK99_10610 PF03775 Septum formation inhibitor MinC, C-terminal domain NRK99_10615 PF05166 YcgL domain NRK99_10620 PF13406 Transglycosylase SLT domain NRK99_10625 PF03313 Serine dehydratase alpha chain NRK99_10625 PF03315 Serine dehydratase beta chain NRK99_10630 PF03313 Serine dehydratase alpha chain NRK99_10630 PF03315 Serine dehydratase beta chain NRK99_10635 PF06865 Pyrimidine/purine nucleoside phosphorylase NRK99_10640 PF00375 Sodium:dicarboxylate symporter family NRK99_10645 PF00376 MerR family regulatory protein NRK99_10645 PF09278 MerR, DNA binding NRK99_10650 PF02803 Thiolase, C-terminal domain NRK99_10650 PF00108 Thiolase, N-terminal domain NRK99_10655 PF08668 HDOD domain NRK99_10655 PF00563 EAL domain NRK99_10660 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRK99_10665 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRK99_10675 PF04542 Sigma-70 region 2 NRK99_10675 PF08281 Sigma-70, region 4 NRK99_10700 PF01882 Protein of unknown function DUF58 NRK99_10705 PF07726 ATPase family associated with various cellular activities (AAA) NRK99_10705 PF17863 AAA lid domain NRK99_10710 PF02803 Thiolase, C-terminal domain NRK99_10710 PF00108 Thiolase, N-terminal domain NRK99_10715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRK99_10715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRK99_10715 PF00378 Enoyl-CoA hydratase/isomerase NRK99_10725 PF07152 YaeQ protein NRK99_10745 PF00158 Sigma-54 interaction domain NRK99_10745 PF13188 PAS domain NRK99_10745 PF02954 Bacterial regulatory protein, Fis family NRK99_10750 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRK99_10750 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRK99_10755 PF00291 Pyridoxal-phosphate dependent enzyme NRK99_10760 PF07687 Peptidase dimerisation domain NRK99_10760 PF01546 Peptidase family M20/M25/M40 NRK99_10765 PF01979 Amidohydrolase family NRK99_10770 PF00696 Amino acid kinase family NRK99_10775 PF00892 EamA-like transporter family NRK99_10780 PF13478 XdhC Rossmann domain NRK99_10780 PF02625 XdhC and CoxI family NRK99_10790 PF12804 MobA-like NTP transferase domain NRK99_10795 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRK99_10795 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_10800 PF01979 Amidohydrolase family NRK99_10805 PF00941 FAD binding domain in molybdopterin dehydrogenase NRK99_10810 PF01799 [2Fe-2S] binding domain NRK99_10810 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRK99_10810 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRK99_10815 PF00860 Permease family NRK99_10820 PF01979 Amidohydrolase family NRK99_10825 PF00860 Permease family NRK99_10830 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRK99_10830 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRK99_10835 PF03450 CO dehydrogenase flavoprotein C-terminal domain NRK99_10835 PF00941 FAD binding domain in molybdopterin dehydrogenase NRK99_10840 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK99_10840 PF01799 [2Fe-2S] binding domain NRK99_10850 PF05433 Glycine zipper 2TM domain NRK99_10860 PF03606 C4-dicarboxylate anaerobic carrier NRK99_10865 PF00501 AMP-binding enzyme NRK99_10865 PF13193 AMP-binding enzyme C-terminal domain NRK99_10875 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NRK99_10875 PF01502 Phosphoribosyl-AMP cyclohydrolase NRK99_10880 PF00977 Histidine biosynthesis protein NRK99_10885 PF01627 Hpt domain NRK99_10885 PF00512 His Kinase A (phospho-acceptor) domain NRK99_10885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_10885 PF00072 Response regulator receiver domain NRK99_10890 PF08448 PAS fold NRK99_10890 PF00990 Diguanylate cyclase, GGDEF domain NRK99_10895 PF00072 Response regulator receiver domain NRK99_10900 PF00977 Histidine biosynthesis protein NRK99_10905 PF00117 Glutamine amidotransferase class-I NRK99_10910 PF08645 Polynucleotide kinase 3 phosphatase NRK99_10910 PF00475 Imidazoleglycerol-phosphate dehydratase NRK99_10915 PF00155 Aminotransferase class I and II NRK99_10920 PF00815 Histidinol dehydrogenase NRK99_10925 PF01634 ATP phosphoribosyltransferase NRK99_10925 PF08029 HisG, C-terminal domain NRK99_10935 PF04851 Type III restriction enzyme, res subunit NRK99_10935 PF13307 Helicase C-terminal domain NRK99_10940 PF00814 Glycoprotease family NRK99_10950 PF00561 alpha/beta hydrolase fold NRK99_10955 PF13193 AMP-binding enzyme C-terminal domain NRK99_10955 PF00501 AMP-binding enzyme NRK99_10960 PF00570 HRDC domain NRK99_10960 PF01612 3'-5' exonuclease NRK99_10965 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_10975 PF01207 Dihydrouridine synthase (Dus) NRK99_10980 PF04304 Protein of unknown function (DUF454) NRK99_10985 PF00156 Phosphoribosyl transferase domain NRK99_10990 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NRK99_10990 PF12169 DNA polymerase III subunits gamma and tau domain III NRK99_10990 PF12170 DNA polymerase III tau subunit V interacting with alpha NRK99_10995 PF02575 YbaB/EbfC DNA-binding family NRK99_11000 PF00141 Peroxidase NRK99_11010 PF07670 Nucleoside recognition NRK99_11015 PF00196 Bacterial regulatory proteins, luxR family NRK99_11015 PF00072 Response regulator receiver domain NRK99_11020 PF00571 CBS domain NRK99_11020 PF02272 DHHA1 domain NRK99_11020 PF01743 Poly A polymerase head domain NRK99_11020 PF01368 DHH family NRK99_11025 PF04408 Helicase associated domain (HA2) NRK99_11025 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NRK99_11025 PF00270 DEAD/DEAH box helicase NRK99_11025 PF00271 Helicase conserved C-terminal domain NRK99_11025 PF11898 Domain of unknown function (DUF3418) NRK99_11035 PF01386 Ribosomal L25p family NRK99_11040 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK99_11040 PF00072 Response regulator receiver domain NRK99_11040 PF01627 Hpt domain NRK99_11040 PF00512 His Kinase A (phospho-acceptor) domain NRK99_11040 PF00672 HAMP domain NRK99_11040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_11045 PF00072 Response regulator receiver domain NRK99_11050 PF00753 Metallo-beta-lactamase superfamily NRK99_11060 PF02769 AIR synthase related protein, C-terminal domain NRK99_11060 PF00586 AIR synthase related protein, N-terminal domain NRK99_11075 PF10672 S-adenosylmethionine-dependent methyltransferase NRK99_11075 PF17785 PUA-like domain NRK99_11080 PF12729 Four helix bundle sensory module for signal transduction NRK99_11080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_11080 PF00672 HAMP domain NRK99_11085 PF00708 Acylphosphatase NRK99_11090 PF02798 Glutathione S-transferase, N-terminal domain NRK99_11090 PF00043 Glutathione S-transferase, C-terminal domain NRK99_11095 PF08264 Anticodon-binding domain of tRNA NRK99_11095 PF09334 tRNA synthetases class I (M) NRK99_11095 PF01588 Putative tRNA binding domain NRK99_11100 PF10609 NUBPL iron-transfer P-loop NTPase NRK99_11105 PF00485 Phosphoribulokinase / Uridine kinase family NRK99_11110 PF00692 dUTPase NRK99_11115 PF01384 Phosphate transporter family NRK99_11120 PF12111 Polyribonucleotide phosphorylase C terminal NRK99_11120 PF10150 Ribonuclease E/G family NRK99_11120 PF00575 S1 RNA binding domain NRK99_11125 PF01479 S4 domain NRK99_11125 PF00849 RNA pseudouridylate synthase NRK99_11130 PF13419 Haloacid dehalogenase-like hydrolase NRK99_11135 PF02545 Maf-like protein NRK99_11145 PF02620 Large ribosomal RNA subunit accumulation protein YceD NRK99_11150 PF01783 Ribosomal L32p protein family NRK99_11155 PF02504 Fatty acid synthesis protein NRK99_11160 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRK99_11160 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRK99_11165 PF00698 Acyl transferase domain NRK99_11175 PF00550 Phosphopantetheine attachment site NRK99_11180 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK99_11180 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK99_11185 PF01063 Amino-transferase class IV NRK99_11190 PF02618 YceG-like family NRK99_11195 PF02223 Thymidylate kinase NRK99_11200 PF09115 DNA polymerase III, delta subunit, C terminal NRK99_11205 PF01026 TatD related DNase NRK99_11210 PF00589 Phage integrase family NRK99_11220 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NRK99_11220 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NRK99_11220 PF01189 16S rRNA methyltransferase RsmB/F NRK99_11225 PF02470 MlaD protein NRK99_11230 PF04403 Paraquat-inducible protein A NRK99_11245 PF00285 Citrate synthase, C-terminal domain NRK99_11250 PF03972 MmgE/PrpD family NRK99_11265 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NRK99_11265 PF06974 Protein of unknown function (DUF1298) NRK99_11290 PF00106 short chain dehydrogenase NRK99_11300 PF07130 YebG protein NRK99_11325 PF05707 Zonular occludens toxin (Zot) NRK99_11330 PF10734 Protein of unknown function (DUF2523) NRK99_11370 PF13654 AAA domain NRK99_11370 PF05362 Lon protease (S16) C-terminal proteolytic domain NRK99_11375 PF07977 FabA-like domain NRK99_11380 PF04957 Ribosome modulation factor NRK99_11390 PF00005 ABC transporter NRK99_11390 PF16326 ABC transporter C-terminal domain NRK99_11390 PF12848 ABC transporter NRK99_11400 PF01170 Putative RNA methylase family UPF0020 NRK99_11400 PF02926 THUMP domain NRK99_11400 PF10672 S-adenosylmethionine-dependent methyltransferase NRK99_11405 PF07126 Cell-division protein ZapC NRK99_11410 PF01180 Dihydroorotate dehydrogenase NRK99_11415 PF05088 Bacterial NAD-glutamate dehydrogenase NRK99_11425 PF11940 Domain of unknown function (DUF3458) Ig-like fold NRK99_11425 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NRK99_11425 PF01433 Peptidase family M1 domain NRK99_11430 PF03572 Peptidase family S41 NRK99_11430 PF17804 Tail specific protease N-terminal domain NRK99_11430 PF11818 C-terminal domain of tail specific protease (DUF3340) NRK99_11430 PF00595 PDZ domain NRK99_11435 PF04352 ProQ/FINO family NRK99_11435 PF17516 ProQ C-terminal domain NRK99_11440 PF13185 GAF domain NRK99_11450 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRK99_11465 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRK99_11465 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NRK99_11475 PF00403 Heavy-metal-associated domain NRK99_11490 PF13545 Crp-like helix-turn-helix domain NRK99_11490 PF00027 Cyclic nucleotide-binding domain NRK99_11495 PF00582 Universal stress protein family NRK99_11500 PF01171 PP-loop family NRK99_11515 PF00043 Glutathione S-transferase, C-terminal domain NRK99_11515 PF02798 Glutathione S-transferase, N-terminal domain NRK99_11520 PF05025 RbsD / FucU transport protein family NRK99_11525 PF00005 ABC transporter NRK99_11530 PF02653 Branched-chain amino acid transport system / permease component NRK99_11535 PF13407 Periplasmic binding protein domain NRK99_11540 PF00294 pfkB family carbohydrate kinase NRK99_11545 PF00356 Bacterial regulatory proteins, lacI family NRK99_11550 PF00990 Diguanylate cyclase, GGDEF domain NRK99_11550 PF17152 Periplasmic sensor domain NRK99_11575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_11575 PF00512 His Kinase A (phospho-acceptor) domain NRK99_11575 PF09456 RcsC Alpha-Beta-Loop (ABL) NRK99_11575 PF00072 Response regulator receiver domain NRK99_11580 PF00216 Bacterial DNA-binding protein NRK99_11585 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NRK99_11585 PF03147 Ferredoxin-fold anticodon binding domain NRK99_11585 PF01588 Putative tRNA binding domain NRK99_11585 PF03483 B3/4 domain NRK99_11585 PF03484 tRNA synthetase B5 domain NRK99_11590 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NRK99_11590 PF01409 tRNA synthetases class II core domain (F) NRK99_11595 PF00453 Ribosomal protein L20 NRK99_11600 PF01632 Ribosomal protein L35 NRK99_11605 PF05198 Translation initiation factor IF-3, N-terminal domain NRK99_11605 PF00707 Translation initiation factor IF-3, C-terminal domain NRK99_11610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRK99_11610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRK99_11610 PF03129 Anticodon binding domain NRK99_11610 PF02824 TGS domain NRK99_11620 PF04055 Radical SAM superfamily NRK99_11630 PF03989 DNA gyrase C-terminal domain, beta-propeller NRK99_11630 PF00521 DNA gyrase/topoisomerase IV, subunit A NRK99_11640 PF13419 Haloacid dehalogenase-like hydrolase NRK99_11645 PF03477 ATP cone domain NRK99_11645 PF02867 Ribonucleotide reductase, barrel domain NRK99_11645 PF00317 Ribonucleotide reductase, all-alpha domain NRK99_11650 PF00268 Ribonucleotide reductase, small chain NRK99_11655 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK99_11660 PF06725 3D domain NRK99_11660 PF03562 MltA specific insert domain NRK99_11665 PF06945 Protein of unknown function (DUF1289) NRK99_11670 PF02378 Phosphotransferase system, EIIC NRK99_11670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRK99_11675 PF00294 pfkB family carbohydrate kinase NRK99_11680 PF00381 PTS HPr component phosphorylation site NRK99_11680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK99_11685 PF00356 Bacterial regulatory proteins, lacI family NRK99_11685 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK99_11690 PF03222 Tryptophan/tyrosine permease family NRK99_11700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_11705 PF00271 Helicase conserved C-terminal domain NRK99_11705 PF00270 DEAD/DEAH box helicase NRK99_11715 PF01264 Chorismate synthase NRK99_11720 PF05175 Methyltransferase small domain NRK99_11725 PF01713 Smr domain NRK99_11735 PF00990 Diguanylate cyclase, GGDEF domain NRK99_11735 PF08448 PAS fold NRK99_11740 PF00300 Histidine phosphatase superfamily (branch 1) NRK99_11755 PF08329 Chitinase A, N-terminal domain NRK99_11755 PF00704 Glycosyl hydrolases family 18 NRK99_11765 PF03831 PhnA domain NRK99_11765 PF08274 PhnA Zinc-Ribbon NRK99_11785 PF02567 Phenazine biosynthesis-like protein NRK99_11810 PF01327 Polypeptide deformylase NRK99_11835 PF03330 Lytic transglycolase NRK99_11845 PF04310 MukB N-terminal NRK99_11845 PF16330 MukB hinge domain NRK99_11850 PF04288 MukE-like family NRK99_11855 PF03882 MukF winged-helix domain NRK99_11855 PF17193 MukF C-terminal domain NRK99_11855 PF17192 MukF middle domain NRK99_11860 PF13847 Methyltransferase domain NRK99_11865 PF02698 DUF218 domain NRK99_11870 PF00121 Triosephosphate isomerase NRK99_11875 PF00365 Phosphofructokinase NRK99_11880 PF07687 Peptidase dimerisation domain NRK99_11880 PF01546 Peptidase family M20/M25/M40 NRK99_11885 PF13419 Haloacid dehalogenase-like hydrolase NRK99_11890 PF00883 Cytosol aminopeptidase family, catalytic domain NRK99_11890 PF02789 Cytosol aminopeptidase family, N-terminal domain NRK99_11935 PF00128 Alpha amylase, catalytic domain NRK99_11935 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRK99_11945 PF11398 Protein of unknown function (DUF2813) NRK99_11955 PF14525 AraC-binding-like domain NRK99_11955 PF12833 Helix-turn-helix domain NRK99_11965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_11965 PF03466 LysR substrate binding domain NRK99_11970 PF01925 Sulfite exporter TauE/SafE NRK99_11975 PF03942 DTW domain NRK99_11980 PF18029 Glyoxalase-like domain NRK99_11980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK99_11985 PF07478 D-ala D-ala ligase C-terminus NRK99_11985 PF01820 D-ala D-ala ligase N-terminus NRK99_11995 PF00255 Glutathione peroxidase NRK99_12000 PF00271 Helicase conserved C-terminal domain NRK99_12000 PF00270 DEAD/DEAH box helicase NRK99_12005 PF13673 Acetyltransferase (GNAT) domain NRK99_12020 PF01928 CYTH domain NRK99_12035 PF00583 Acetyltransferase (GNAT) family NRK99_12040 PF00465 Iron-containing alcohol dehydrogenase NRK99_12045 PF03992 Antibiotic biosynthesis monooxygenase NRK99_12050 PF08543 Phosphomethylpyrimidine kinase NRK99_12070 PF00561 alpha/beta hydrolase fold NRK99_12070 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NRK99_12075 PF01575 MaoC like domain NRK99_12095 PF00664 ABC transporter transmembrane region NRK99_12095 PF00005 ABC transporter NRK99_12100 PF00664 ABC transporter transmembrane region NRK99_12100 PF00005 ABC transporter NRK99_12105 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRK99_12105 PF00512 His Kinase A (phospho-acceptor) domain NRK99_12105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_12105 PF00672 HAMP domain NRK99_12105 PF01627 Hpt domain NRK99_12105 PF00072 Response regulator receiver domain NRK99_12110 PF00085 Thioredoxin NRK99_12115 PF00939 Sodium:sulfate symporter transmembrane region NRK99_12120 PF00343 Carbohydrate phosphorylase NRK99_12140 PF04715 Anthranilate synthase component I, N terminal region NRK99_12140 PF00425 chorismate binding enzyme NRK99_12145 PF00293 NUDIX domain NRK99_12150 PF03222 Tryptophan/tyrosine permease family NRK99_12155 PF00375 Sodium:dicarboxylate symporter family NRK99_12160 PF16124 RecQ zinc-binding NRK99_12160 PF00570 HRDC domain NRK99_12160 PF00271 Helicase conserved C-terminal domain NRK99_12160 PF09382 RQC domain NRK99_12160 PF00270 DEAD/DEAH box helicase NRK99_12165 PF08298 PrkA AAA domain NRK99_12165 PF06798 PrkA serine protein kinase C-terminal domain NRK99_12170 PF04285 Protein of unknown function (DUF444) NRK99_12175 PF04293 SpoVR like protein NRK99_12180 PF07840 FadR C-terminal domain NRK99_12180 PF00392 Bacterial regulatory proteins, gntR family NRK99_12185 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NRK99_12190 PF02600 Disulfide bond formation protein DsbB NRK99_12195 PF09335 SNARE associated Golgi protein NRK99_12205 PF00271 Helicase conserved C-terminal domain NRK99_12205 PF17757 UvrB interaction domain NRK99_12205 PF12344 Ultra-violet resistance protein B NRK99_12205 PF02151 UvrB/uvrC motif NRK99_12205 PF04851 Type III restriction enzyme, res subunit NRK99_12215 PF06826 Predicted Permease Membrane Region NRK99_12215 PF02080 TrkA-C domain NRK99_12220 PF01464 Transglycosylase SLT domain NRK99_12220 PF01551 Peptidase family M23 NRK99_12220 PF10145 Phage-related minor tail protein NRK99_12225 PF03401 Tripartite tricarboxylate transporter family receptor NRK99_12235 PF01970 Tripartite tricarboxylate transporter TctA family NRK99_12240 PF00072 Response regulator receiver domain NRK99_12240 PF12431 Transcriptional regulator NRK99_12240 PF08279 HTH domain NRK99_12245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_12245 PF00989 PAS fold NRK99_12245 PF17203 Single cache domain 3 NRK99_12245 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRK99_12250 PF00480 ROK family NRK99_12250 PF01047 MarR family NRK99_12255 PF17200 Single Cache domain 2 NRK99_12255 PF00672 HAMP domain NRK99_12255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_12260 PF02810 SEC-C motif NRK99_12265 PF04324 BFD-like [2Fe-2S] binding domain NRK99_12265 PF01266 FAD dependent oxidoreductase NRK99_12270 PF00890 FAD binding domain NRK99_12275 PF02754 Cysteine-rich domain NRK99_12275 PF13183 4Fe-4S dicluster domain NRK99_12285 PF02335 Cytochrome c552 NRK99_12290 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRK99_12290 PF13435 Cytochrome c554 and c-prime NRK99_12295 PF00037 4Fe-4S binding domain NRK99_12295 PF13247 4Fe-4S dicluster domain NRK99_12300 PF03916 Polysulphide reductase, NrfD NRK99_12305 PF01578 Cytochrome C assembly protein NRK99_12305 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRK99_12310 PF08534 Redoxin NRK99_12315 PF03918 Cytochrome C biogenesis protein NRK99_12325 PF00768 D-alanyl-D-alanine carboxypeptidase NRK99_12330 PF01212 Beta-eliminating lyase NRK99_12340 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NRK99_12345 PF01266 FAD dependent oxidoreductase NRK99_12350 PF00571 CBS domain NRK99_12350 PF00478 IMP dehydrogenase / GMP reductase domain NRK99_12365 PF08267 Cobalamin-independent synthase, N-terminal domain NRK99_12365 PF01717 Cobalamin-independent synthase, Catalytic domain NRK99_12370 PF03466 LysR substrate binding domain NRK99_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_12380 PF00593 TonB dependent receptor NRK99_12380 PF07715 TonB-dependent Receptor Plug Domain NRK99_12385 PF12833 Helix-turn-helix domain NRK99_12390 PF00106 short chain dehydrogenase NRK99_12395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_12395 PF03466 LysR substrate binding domain NRK99_12400 PF13460 NAD(P)H-binding NRK99_12410 PF01053 Cys/Met metabolism PLP-dependent enzyme NRK99_12415 PF00675 Insulinase (Peptidase family M16) NRK99_12415 PF05193 Peptidase M16 inactive domain NRK99_12420 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRK99_12420 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRK99_12425 PF00893 Small Multidrug Resistance protein NRK99_12430 PF18381 YcaO cyclodehydratase C-terminal domain NRK99_12430 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NRK99_12435 PF01226 Formate/nitrite transporter NRK99_12440 PF01228 Glycine radical NRK99_12440 PF02901 Pyruvate formate lyase-like NRK99_12450 PF00202 Aminotransferase class-III NRK99_12455 PF00266 Aminotransferase class-V NRK99_12460 PF00392 Bacterial regulatory proteins, gntR family NRK99_12460 PF07702 UTRA domain NRK99_12470 PF00005 ABC transporter NRK99_12475 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_12480 PF01266 FAD dependent oxidoreductase NRK99_12485 PF03692 Putative zinc- or iron-chelating domain NRK99_12500 PF00549 CoA-ligase NRK99_12500 PF02629 CoA binding domain NRK99_12505 PF00549 CoA-ligase NRK99_12505 PF08442 ATP-grasp domain NRK99_12510 PF02817 e3 binding domain NRK99_12510 PF00364 Biotin-requiring enzyme NRK99_12510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRK99_12515 PF00676 Dehydrogenase E1 component NRK99_12515 PF16078 2-oxoglutarate dehydrogenase N-terminus NRK99_12515 PF02779 Transketolase, pyrimidine binding domain NRK99_12515 PF16870 2-oxoglutarate dehydrogenase C-terminal NRK99_12520 PF13085 2Fe-2S iron-sulfur cluster binding domain NRK99_12525 PF00890 FAD binding domain NRK99_12525 PF02910 Fumarate reductase flavoprotein C-term NRK99_12530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRK99_12535 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRK99_12540 PF00285 Citrate synthase, C-terminal domain NRK99_12555 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK99_12555 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK99_12560 PF01266 FAD dependent oxidoreductase NRK99_12560 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NRK99_12570 PF03606 C4-dicarboxylate anaerobic carrier NRK99_12585 PF01863 Protein of unknown function DUF45 NRK99_12600 PF01197 Ribosomal protein L31 NRK99_12605 PF00444 Ribosomal protein L36 NRK99_12610 PF02678 Pirin NRK99_12610 PF05726 Pirin C-terminal cupin domain NRK99_12615 PF03466 LysR substrate binding domain NRK99_12615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_12620 PF08411 Exonuclease C-terminal NRK99_12620 PF00929 Exonuclease NRK99_12635 PF03788 LrgA family NRK99_12640 PF04172 LrgB-like family NRK99_12645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRK99_12645 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NRK99_12650 PF00501 AMP-binding enzyme NRK99_12655 PF08891 YfcL protein NRK99_12665 PF03741 Integral membrane protein TerC family NRK99_12670 PF00691 OmpA family NRK99_12675 PF03707 Bacterial signalling protein N terminal repeat NRK99_12675 PF00990 Diguanylate cyclase, GGDEF domain NRK99_12675 PF00563 EAL domain NRK99_12680 PF13689 YfiR/HmsC-like NRK99_12685 PF18024 Helix-turn-helix domain NRK99_12685 PF00158 Sigma-54 interaction domain NRK99_12695 PF01329 Pterin 4 alpha carbinolamine dehydratase NRK99_12700 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NRK99_12705 PF05128 Domain of unknown function (DUF697) NRK99_12710 PF04317 YcjX-like family, DUF463 NRK99_12720 PF06667 Phage shock protein B NRK99_12725 PF04012 PspA/IM30 family NRK99_12730 PF02954 Bacterial regulatory protein, Fis family NRK99_12730 PF00158 Sigma-54 interaction domain NRK99_12735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_12740 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_12745 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_12745 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK99_12750 PF00005 ABC transporter NRK99_12750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK99_12755 PF00005 ABC transporter NRK99_12760 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NRK99_12765 PF00156 Phosphoribosyl transferase domain NRK99_12770 PF02674 Colicin V production protein NRK99_12775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRK99_12775 PF02403 Seryl-tRNA synthetase N-terminal domain NRK99_12780 PF00004 ATPase family associated with various cellular activities (AAA) NRK99_12780 PF16193 AAA C-terminal domain NRK99_12780 PF12002 MgsA AAA+ ATPase C terminal NRK99_12785 PF03548 Outer membrane lipoprotein carrier protein LolA NRK99_12790 PF01580 FtsK/SpoIIIE family NRK99_12790 PF09397 Ftsk gamma domain NRK99_12790 PF17854 FtsK alpha domain NRK99_12790 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NRK99_12795 PF01037 Lrp/AsnC ligand binding domain NRK99_12800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_12805 PF17158 Membrane-associated sensor, integral membrane domain NRK99_12805 PF00990 Diguanylate cyclase, GGDEF domain NRK99_12810 PF05433 Glycine zipper 2TM domain NRK99_12815 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NRK99_12820 PF04377 Arginine-tRNA-protein transferase, C terminus NRK99_12820 PF04376 Arginine-tRNA-protein transferase, N terminus NRK99_12825 PF01176 Translation initiation factor 1A / IF-1 NRK99_12830 PF00004 ATPase family associated with various cellular activities (AAA) NRK99_12830 PF07724 AAA domain (Cdc48 subfamily) NRK99_12830 PF17871 AAA lid domain NRK99_12830 PF02861 Clp amino terminal domain, pathogenicity island component NRK99_12830 PF10431 C-terminal, D2-small domain, of ClpB protein NRK99_12835 PF02617 ATP-dependent Clp protease adaptor protein ClpS NRK99_12840 PF00313 'Cold-shock' DNA-binding domain NRK99_12845 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NRK99_12845 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NRK99_12895 PF04717 Type VI secretion system, phage-baseplate injector NRK99_12910 PF06744 Type VI secretion protein IcmF C-terminal NRK99_12910 PF14331 ImcF-related N-terminal domain NRK99_12910 PF06761 Intracellular multiplication and human macrophage-killing NRK99_12925 PF00158 Sigma-54 interaction domain NRK99_12925 PF02954 Bacterial regulatory protein, Fis family NRK99_12930 PF17871 AAA lid domain NRK99_12930 PF10431 C-terminal, D2-small domain, of ClpB protein NRK99_12930 PF00004 ATPase family associated with various cellular activities (AAA) NRK99_12930 PF07724 AAA domain (Cdc48 subfamily) NRK99_12940 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NRK99_12960 PF05947 Type VI secretion system, TssF NRK99_12970 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NRK99_12995 PF03527 RHS protein NRK99_12995 PF05593 RHS Repeat NRK99_13005 PF04717 Type VI secretion system, phage-baseplate injector NRK99_13010 PF05638 Type VI secretion system effector, Hcp NRK99_13020 PF10722 Putative bacterial sensory transduction regulator NRK99_13030 PF00265 Thymidine kinase NRK99_13035 PF03553 Na+/H+ antiporter family NRK99_13040 PF00816 H-NS histone family NRK99_13045 PF01923 Cobalamin adenosyltransferase NRK99_13050 PF12843 Putative quorum-sensing-regulated virulence factor NRK99_13055 PF04055 Radical SAM superfamily NRK99_13060 PF06508 Queuosine biosynthesis protein QueC NRK99_13075 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NRK99_13080 PF18073 Rubredoxin metal binding domain NRK99_13090 PF00216 Bacterial DNA-binding protein NRK99_13095 PF00575 S1 RNA binding domain NRK99_13100 PF02224 Cytidylate kinase NRK99_13105 PF00925 GTP cyclohydrolase II NRK99_13120 PF03466 LysR substrate binding domain NRK99_13120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_13125 PF03466 LysR substrate binding domain NRK99_13125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_13130 PF07690 Major Facilitator Superfamily NRK99_13145 PF00881 Nitroreductase family NRK99_13150 PF13188 PAS domain NRK99_13150 PF00563 EAL domain NRK99_13150 PF00990 Diguanylate cyclase, GGDEF domain NRK99_13150 PF03707 Bacterial signalling protein N terminal repeat NRK99_13160 PF03466 LysR substrate binding domain NRK99_13160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_13165 PF00072 Response regulator receiver domain NRK99_13175 PF01212 Beta-eliminating lyase NRK99_13190 PF00248 Aldo/keto reductase family NRK99_13195 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NRK99_13205 PF03411 Penicillin-insensitive murein endopeptidase NRK99_13215 PF04536 TPM domain NRK99_13240 PF01618 MotA/TolQ/ExbB proton channel family NRK99_13245 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRK99_13245 PF00691 OmpA family NRK99_13250 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NRK99_13255 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRK99_13260 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRK99_13260 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRK99_13270 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRK99_13270 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRK99_13275 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRK99_13275 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK99_13275 PF00384 Molybdopterin oxidoreductase NRK99_13280 PF00146 NADH dehydrogenase NRK99_13285 PF12838 4Fe-4S dicluster domain NRK99_13290 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NRK99_13295 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NRK99_13300 PF00361 Proton-conducting membrane transporter NRK99_13300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NRK99_13305 PF00361 Proton-conducting membrane transporter NRK99_13310 PF00361 Proton-conducting membrane transporter NRK99_13320 PF00072 Response regulator receiver domain NRK99_13325 PF01966 HD domain NRK99_13330 PF02769 AIR synthase related protein, C-terminal domain NRK99_13330 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NRK99_13330 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NRK99_13335 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_13335 PF01464 Transglycosylase SLT domain NRK99_13340 PF07191 zinc-ribbons NRK99_13345 PF01926 50S ribosome-binding GTPase NRK99_13345 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NRK99_13350 PF13360 PQQ-like domain NRK99_13355 PF09976 Tetratricopeptide repeat-like domain NRK99_13360 PF03129 Anticodon binding domain NRK99_13360 PF13393 Histidyl-tRNA synthetase NRK99_13365 PF04551 GcpE protein NRK99_13370 PF13464 Domain of unknown function (DUF4115) NRK99_13380 PF04055 Radical SAM superfamily NRK99_13385 PF00334 Nucleoside diphosphate kinase NRK99_13390 PF12404 Peptidase NRK99_13390 PF00883 Cytosol aminopeptidase family, catalytic domain NRK99_13395 PF00883 Cytosol aminopeptidase family, catalytic domain NRK99_13395 PF12404 Peptidase NRK99_13400 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK99_13405 PF00012 Hsp70 protein NRK99_13410 PF07743 HSCB C-terminal oligomerisation domain NRK99_13415 PF01521 Iron-sulphur cluster biosynthesis NRK99_13420 PF01592 NifU-like N terminal domain NRK99_13425 PF00266 Aminotransferase class-V NRK99_13430 PF02082 Transcriptional regulator NRK99_13435 PF00588 SpoU rRNA Methylase family NRK99_13445 PF02036 SCP-2 sterol transfer family NRK99_13450 PF01136 Peptidase family U32 NRK99_13455 PF01136 Peptidase family U32 NRK99_13460 PF13181 Tetratricopeptide repeat NRK99_13460 PF07719 Tetratricopeptide repeat NRK99_13470 PF07549 SecD/SecF GG Motif NRK99_13470 PF02355 Protein export membrane protein NRK99_13475 PF07549 SecD/SecF GG Motif NRK99_13475 PF13721 SecD export protein N-terminal TM region NRK99_13475 PF02355 Protein export membrane protein NRK99_13480 PF02699 Preprotein translocase subunit NRK99_13485 PF01702 Queuine tRNA-ribosyltransferase NRK99_13490 PF02547 Queuosine biosynthesis protein NRK99_13495 PF00571 CBS domain NRK99_13500 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRK99_13500 PF00578 AhpC/TSA family NRK99_13505 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_13505 PF13192 Thioredoxin domain NRK99_13510 PF07690 Major Facilitator Superfamily NRK99_13515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_13515 PF00512 His Kinase A (phospho-acceptor) domain NRK99_13515 PF00989 PAS fold NRK99_13525 PF08241 Methyltransferase domain NRK99_13530 PF00884 Sulfatase NRK99_13535 PF04055 Radical SAM superfamily NRK99_13535 PF13186 Iron-sulfur cluster-binding domain NRK99_13545 PF14490 Helix-hairpin-helix containing domain NRK99_13545 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NRK99_13545 PF13538 UvrD-like helicase C-terminal domain NRK99_13550 PF09722 Protein of unknown function (DUF2384) NRK99_13575 PF00665 Integrase core domain NRK99_13600 PF02347 Glycine cleavage system P-protein NRK99_13605 PF01597 Glycine cleavage H-protein NRK99_13610 PF08669 Glycine cleavage T-protein C-terminal barrel domain NRK99_13610 PF01571 Aminomethyltransferase folate-binding domain NRK99_13615 PF01494 FAD binding domain NRK99_13620 PF01494 FAD binding domain NRK99_13625 PF03695 Uncharacterised protein family (UPF0149) NRK99_13630 PF05164 Cell division protein ZapA NRK99_13640 PF07690 Major Facilitator Superfamily NRK99_13645 PF02798 Glutathione S-transferase, N-terminal domain NRK99_13645 PF00043 Glutathione S-transferase, C-terminal domain NRK99_13655 PF00459 Inositol monophosphatase family NRK99_13660 PF12729 Four helix bundle sensory module for signal transduction NRK99_13660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_13660 PF00672 HAMP domain NRK99_13665 PF02535 ZIP Zinc transporter NRK99_13675 PF01048 Phosphorylase superfamily NRK99_13685 PF01497 Periplasmic binding protein NRK99_13700 PF02561 Flagellar protein FliS NRK99_13705 PF02465 Flagellar hook-associated protein 2 N-terminus NRK99_13705 PF07195 Flagellar hook-associated protein 2 C-terminus NRK99_13705 PF07196 Flagellin hook IN motif NRK99_13715 PF00669 Bacterial flagellin N-terminal helical region NRK99_13715 PF07196 Flagellin hook IN motif NRK99_13715 PF00700 Bacterial flagellin C-terminal helical region NRK99_13720 PF00669 Bacterial flagellin N-terminal helical region NRK99_13720 PF00700 Bacterial flagellin C-terminal helical region NRK99_13720 PF07196 Flagellin hook IN motif NRK99_13725 PF03458 UPF0126 domain NRK99_13735 PF02926 THUMP domain NRK99_13735 PF02568 Thiamine biosynthesis protein (ThiI) NRK99_13750 PF10711 Hypothetical protein (DUF2513) NRK99_13765 PF02796 Helix-turn-helix domain of resolvase NRK99_13765 PF00239 Resolvase, N terminal domain NRK99_13790 PF06832 Penicillin-Binding Protein C-terminus Family NRK99_13790 PF00912 Transglycosylase NRK99_13790 PF00905 Penicillin binding protein transpeptidase domain NRK99_13795 PF00207 Alpha-2-macroglobulin family NRK99_13795 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NRK99_13795 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NRK99_13795 PF17962 Bacterial macroglobulin domain 6 NRK99_13795 PF01835 MG2 domain NRK99_13795 PF07678 A-macroglobulin TED domain NRK99_13795 PF07703 Alpha-2-macroglobulin bait region domain NRK99_13795 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NRK99_13795 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NRK99_13800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK99_13800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_13805 PF03707 Bacterial signalling protein N terminal repeat NRK99_13805 PF00563 EAL domain NRK99_13805 PF00990 Diguanylate cyclase, GGDEF domain NRK99_13810 PF04055 Radical SAM superfamily NRK99_13820 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_13825 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_13830 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_13835 PF00005 ABC transporter NRK99_13840 PF03956 Lysine exporter LysO NRK99_13845 PF01979 Amidohydrolase family NRK99_13850 PF04336 Acyl carrier protein phosphodiesterase NRK99_13870 PF03960 ArsC family NRK99_13875 PF00578 AhpC/TSA family NRK99_13880 PF13181 Tetratricopeptide repeat NRK99_13880 PF01435 Peptidase family M48 NRK99_13885 PF01206 Sulfurtransferase TusA NRK99_13890 PF01594 AI-2E family transporter NRK99_13900 PF00561 alpha/beta hydrolase fold NRK99_13905 PF03976 Polyphosphate kinase 2 (PPK2) NRK99_13910 PF08402 TOBE domain NRK99_13910 PF00005 ABC transporter NRK99_13915 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_13920 PF14785 Maltose transport system permease protein MalF P2 domain NRK99_13920 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_13925 PF01547 Bacterial extracellular solute-binding protein NRK99_13930 PF04245 37-kD nucleoid-associated bacterial protein NRK99_13935 PF07208 Protein of unknown function (DUF1414) NRK99_13940 PF11893 Domain of unknown function (DUF3413) NRK99_13940 PF00884 Sulfatase NRK99_13945 PF00593 TonB dependent receptor NRK99_13945 PF07715 TonB-dependent Receptor Plug Domain NRK99_13950 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRK99_13950 PF00326 Prolyl oligopeptidase family NRK99_13970 PF03974 Ecotin NRK99_13975 PF04219 Protein of unknown function, DUF NRK99_13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_13980 PF03466 LysR substrate binding domain NRK99_13985 PF01817 Chorismate mutase type II NRK99_13985 PF02153 Prephenate dehydrogenase NRK99_13990 PF00793 DAHP synthetase I family NRK99_13995 PF03009 Glycerophosphoryl diester phosphodiesterase family NRK99_14000 PF01266 FAD dependent oxidoreductase NRK99_14000 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NRK99_14010 PF00455 DeoR C terminal sensor domain NRK99_14010 PF08220 DeoR-like helix-turn-helix domain NRK99_14015 PF07690 Major Facilitator Superfamily NRK99_14020 PF00230 Major intrinsic protein NRK99_14025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRK99_14025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NRK99_14030 PF02743 Cache domain NRK99_14030 PF00672 HAMP domain NRK99_14030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_14040 PF03466 LysR substrate binding domain NRK99_14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_14070 PF00248 Aldo/keto reductase family NRK99_14075 PF07690 Major Facilitator Superfamily NRK99_14090 PF05114 Protein of unknown function (DUF692) NRK99_14110 PF02322 Cytochrome bd terminal oxidase subunit II NRK99_14115 PF01654 Cytochrome bd terminal oxidase subunit I NRK99_14120 PF00155 Aminotransferase class I and II NRK99_14120 PF00392 Bacterial regulatory proteins, gntR family NRK99_14130 PF04391 Protein of unknown function (DUF533) NRK99_14135 PF00892 EamA-like transporter family NRK99_14150 PF10689 Protein of unknown function (DUF2496) NRK99_14160 PF07690 Major Facilitator Superfamily NRK99_14165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_14165 PF03466 LysR substrate binding domain NRK99_14175 PF07690 Major Facilitator Superfamily NRK99_14180 PF09102 Exotoxin A, targeting NRK99_14180 PF09009 Exotoxin A catalytic NRK99_14180 PF09101 Exotoxin A binding NRK99_14185 PF01479 S4 domain NRK99_14185 PF00849 RNA pseudouridylate synthase NRK99_14195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK99_14205 PF01844 HNH endonuclease NRK99_14210 PF00300 Histidine phosphatase superfamily (branch 1) NRK99_14215 PF13309 HTH domain NRK99_14215 PF08348 YheO-like PAS domain NRK99_14220 PF03313 Serine dehydratase alpha chain NRK99_14225 PF01042 Endoribonuclease L-PSP NRK99_14235 PF00672 HAMP domain NRK99_14235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_14250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_14250 PF03466 LysR substrate binding domain NRK99_14255 PF00753 Metallo-beta-lactamase superfamily NRK99_14255 PF14864 Alkyl sulfatase C-terminal NRK99_14255 PF14863 Alkyl sulfatase dimerisation NRK99_14265 PF17944 Arginine decarboxylase C-terminal helical extension NRK99_14265 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRK99_14265 PF17810 Arginine decarboxylase helical bundle domain NRK99_14275 PF07687 Peptidase dimerisation domain NRK99_14275 PF01546 Peptidase family M20/M25/M40 NRK99_14300 PF04264 YceI-like domain NRK99_14305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_14305 PF03466 LysR substrate binding domain NRK99_14315 PF01268 Formate--tetrahydrofolate ligase NRK99_14320 PF00672 HAMP domain NRK99_14320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_14320 PF17200 Single Cache domain 2 NRK99_14325 PF01227 GTP cyclohydrolase I NRK99_14330 PF00994 Probable molybdopterin binding domain NRK99_14330 PF03454 MoeA C-terminal region (domain IV) NRK99_14330 PF03453 MoeA N-terminal region (domain I and II) NRK99_14335 PF00899 ThiF family NRK99_14340 PF06291 Bor protein NRK99_14345 PF06291 Bor protein NRK99_14355 PF06406 StbA protein NRK99_14360 PF00561 alpha/beta hydrolase fold NRK99_14365 PF00005 ABC transporter NRK99_14365 PF03459 TOBE domain NRK99_14370 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_14380 PF02391 MoaE protein NRK99_14385 PF02597 ThiS family NRK99_14390 PF01967 MoaC family NRK99_14395 PF00994 Probable molybdopterin binding domain NRK99_14400 PF03264 NapC/NirT cytochrome c family, N-terminal region NRK99_14405 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NRK99_14410 PF13237 4Fe-4S dicluster domain NRK99_14410 PF12801 4Fe-4S binding domain NRK99_14415 PF12838 4Fe-4S dicluster domain NRK99_14415 PF12800 4Fe-4S binding domain NRK99_14420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRK99_14420 PF01568 Molydopterin dinucleotide binding domain NRK99_14420 PF10518 TAT (twin-arginine translocation) pathway signal sequence NRK99_14420 PF00384 Molybdopterin oxidoreductase NRK99_14430 PF13187 4Fe-4S dicluster domain NRK99_14430 PF12800 4Fe-4S binding domain NRK99_14430 PF00037 4Fe-4S binding domain NRK99_14435 PF06463 Molybdenum Cofactor Synthesis C NRK99_14435 PF04055 Radical SAM superfamily NRK99_14440 PF00672 HAMP domain NRK99_14440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_14440 PF07730 Histidine kinase NRK99_14440 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NRK99_14445 PF00196 Bacterial regulatory proteins, luxR family NRK99_14445 PF00072 Response regulator receiver domain NRK99_14455 PF09456 RcsC Alpha-Beta-Loop (ABL) NRK99_14455 PF00072 Response regulator receiver domain NRK99_14455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_14455 PF00512 His Kinase A (phospho-acceptor) domain NRK99_14465 PF01933 Uncharacterised protein family UPF0052 NRK99_14475 PF13230 Glutamine amidotransferases class-II NRK99_14480 PF13580 SIS domain NRK99_14485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK99_14485 PF02770 Acyl-CoA dehydrogenase, middle domain NRK99_14485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK99_14485 PF09317 Domain of unknown function (DUF1974) NRK99_14490 PF11849 Domain of unknown function (DUF3369) NRK99_14500 PF00929 Exonuclease NRK99_14505 PF00075 RNase H NRK99_14510 PF08241 Methyltransferase domain NRK99_14515 PF16123 Hydroxyacylglutathione hydrolase C-terminus NRK99_14515 PF00753 Metallo-beta-lactamase superfamily NRK99_14520 PF01476 LysM domain NRK99_14520 PF01464 Transglycosylase SLT domain NRK99_14525 PF03372 Endonuclease/Exonuclease/phosphatase family NRK99_14535 PF03061 Thioesterase superfamily NRK99_14545 PF00356 Bacterial regulatory proteins, lacI family NRK99_14550 PF01464 Transglycosylase SLT domain NRK99_14550 PF14718 Soluble lytic murein transglycosylase L domain NRK99_14555 PF03707 Bacterial signalling protein N terminal repeat NRK99_14555 PF00990 Diguanylate cyclase, GGDEF domain NRK99_14555 PF00563 EAL domain NRK99_14560 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRK99_14580 PF04357 TamB, inner membrane protein subunit of TAM complex NRK99_14585 PF17243 POTRA domain TamA domain 1 NRK99_14585 PF01103 Surface antigen NRK99_14585 PF07244 Surface antigen variable number repeat NRK99_14600 PF01625 Peptide methionine sulfoxide reductase NRK99_14610 PF02627 Carboxymuconolactone decarboxylase family NRK99_14615 PF00403 Heavy-metal-associated domain NRK99_14615 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_14615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK99_14620 PF13416 Bacterial extracellular solute-binding protein NRK99_14630 PF00005 ABC transporter NRK99_14635 PF01066 CDP-alcohol phosphatidyltransferase NRK99_14640 PF13406 Transglycosylase SLT domain NRK99_14655 PF01047 MarR family NRK99_14665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRK99_14665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRK99_14665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRK99_14665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRK99_14670 PF03925 SeqA protein C-terminal domain NRK99_14670 PF17206 SeqA protein N-terminal domain NRK99_14675 PF12697 Alpha/beta hydrolase family NRK99_14685 PF01402 Ribbon-helix-helix protein, copG family NRK99_14690 PF00258 Flavodoxin NRK99_14700 PF01475 Ferric uptake regulator family NRK99_14705 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRK99_14705 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NRK99_14710 PF03173 Putative carbohydrate binding domain NRK99_14710 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NRK99_14710 PF00728 Glycosyl hydrolase family 20, catalytic domain NRK99_14710 PF02838 Glycosyl hydrolase family 20, domain 2 NRK99_14715 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRK99_14715 PF00367 phosphotransferase system, EIIB NRK99_14715 PF02378 Phosphotransferase system, EIIC NRK99_14720 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NRK99_14725 PF01979 Amidohydrolase family NRK99_14730 PF00480 ROK family NRK99_14730 PF01047 MarR family NRK99_14735 PF00884 Sulfatase NRK99_14735 PF08019 Phosphoethanolamine transferase EptA/EptB NRK99_14740 PF01709 Transcriptional regulator NRK99_14745 PF02938 GAD domain NRK99_14745 PF00152 tRNA synthetases class II (D, K and N) NRK99_14745 PF01336 OB-fold nucleic acid binding domain NRK99_14750 PF01904 Protein of unknown function DUF72 NRK99_14755 PF13649 Methyltransferase domain NRK99_14760 PF08003 Protein of unknown function (DUF1698) NRK99_14780 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRK99_14780 PF00578 AhpC/TSA family NRK99_14785 PF03466 LysR substrate binding domain NRK99_14785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_14790 PF12563 Hemolytic toxin N terminal NRK99_14790 PF07968 Leukocidin/Hemolysin toxin family NRK99_14795 PF00877 NlpC/P60 family NRK99_14805 PF00171 Aldehyde dehydrogenase family NRK99_14810 PF00440 Bacterial regulatory proteins, tetR family NRK99_14810 PF08359 YsiA-like protein, C-terminal region NRK99_14820 PF00465 Iron-containing alcohol dehydrogenase NRK99_14830 PF00291 Pyridoxal-phosphate dependent enzyme NRK99_14850 PF01554 MatE NRK99_14860 PF04325 Protein of unknown function (DUF465) NRK99_14865 PF12833 Helix-turn-helix domain NRK99_14865 PF02311 AraC-like ligand binding domain NRK99_14870 PF01804 Penicillin amidase NRK99_14875 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRK99_14875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK99_14875 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRK99_14875 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRK99_14875 PF10371 Domain of unknown function NRK99_14880 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRK99_14880 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRK99_14880 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_14885 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK99_14885 PF03473 MOSC domain NRK99_14885 PF03476 MOSC N-terminal beta barrel domain NRK99_14885 PF03476 MOSC N-terminal beta barrel domain NRK99_14885 PF00111 2Fe-2S iron-sulfur cluster binding domain NRK99_14885 PF03473 MOSC domain NRK99_14890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_14890 PF08447 PAS fold NRK99_14890 PF13426 PAS domain NRK99_14895 PF01435 Peptidase family M48 NRK99_14905 PF12697 Alpha/beta hydrolase family NRK99_14905 PF08241 Methyltransferase domain NRK99_14910 PF00155 Aminotransferase class I and II NRK99_14915 PF06968 Biotin and Thiamin Synthesis associated domain NRK99_14915 PF04055 Radical SAM superfamily NRK99_14920 PF00202 Aminotransferase class-III NRK99_14935 PF01336 OB-fold nucleic acid binding domain NRK99_14935 PF00152 tRNA synthetases class II (D, K and N) NRK99_14940 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRK99_14950 PF07687 Peptidase dimerisation domain NRK99_14950 PF01546 Peptidase family M20/M25/M40 NRK99_14955 PF03606 C4-dicarboxylate anaerobic carrier NRK99_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_14965 PF03466 LysR substrate binding domain NRK99_14970 PF03960 ArsC family NRK99_14975 PF07687 Peptidase dimerisation domain NRK99_14975 PF01546 Peptidase family M20/M25/M40 NRK99_14980 PF02557 D-alanyl-D-alanine carboxypeptidase NRK99_14990 PF02080 TrkA-C domain NRK99_14990 PF03471 Transporter associated domain NRK99_14990 PF00999 Sodium/hydrogen exchanger family NRK99_15000 PF03471 Transporter associated domain NRK99_15000 PF00999 Sodium/hydrogen exchanger family NRK99_15000 PF02080 TrkA-C domain NRK99_15010 PF01810 LysE type translocator NRK99_15015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_15015 PF00672 HAMP domain NRK99_15015 PF12729 Four helix bundle sensory module for signal transduction NRK99_15020 PF07509 Protein of unknown function (DUF1523) NRK99_15035 PF01156 Inosine-uridine preferring nucleoside hydrolase NRK99_15040 PF00849 RNA pseudouridylate synthase NRK99_15045 PF01048 Phosphorylase superfamily NRK99_15050 PF00465 Iron-containing alcohol dehydrogenase NRK99_15055 PF04355 SmpA / OmlA family NRK99_15060 PF13460 NAD(P)H-binding NRK99_15065 PF03658 RnfH family Ubiquitin NRK99_15070 PF03364 Polyketide cyclase / dehydrase and lipid transport NRK99_15075 PF01668 SmpB protein NRK99_15085 PF04851 Type III restriction enzyme, res subunit NRK99_15085 PF00271 Helicase conserved C-terminal domain NRK99_15085 PF08463 EcoEI R protein C-terminal NRK99_15085 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NRK99_15090 PF12161 HsdM N-terminal domain NRK99_15090 PF02384 N-6 DNA Methylase NRK99_15095 PF01420 Type I restriction modification DNA specificity domain NRK99_15125 PF03466 LysR substrate binding domain NRK99_15125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_15130 PF00291 Pyridoxal-phosphate dependent enzyme NRK99_15140 PF01740 STAS domain NRK99_15140 PF00916 Sulfate permease family NRK99_15145 PF00180 Isocitrate/isopropylmalate dehydrogenase NRK99_15150 PF12833 Helix-turn-helix domain NRK99_15155 PF01238 Phosphomannose isomerase type I NRK99_15185 PF00155 Aminotransferase class I and II NRK99_15190 PF00367 phosphotransferase system, EIIB NRK99_15190 PF02378 Phosphotransferase system, EIIC NRK99_15195 PF00356 Bacterial regulatory proteins, lacI family NRK99_15195 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK99_15205 PF00583 Acetyltransferase (GNAT) family NRK99_15220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK99_15220 PF02378 Phosphotransferase system, EIIC NRK99_15220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRK99_15225 PF07690 Major Facilitator Superfamily NRK99_15230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK99_15230 PF02378 Phosphotransferase system, EIIC NRK99_15230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRK99_15240 PF00849 RNA pseudouridylate synthase NRK99_15245 PF00293 NUDIX domain NRK99_15255 PF04356 Protein of unknown function (DUF489) NRK99_15260 PF00206 Lyase NRK99_15260 PF08328 Adenylosuccinate lyase C-terminal NRK99_15265 PF08007 Cupin superfamily protein NRK99_15280 PF13508 Acetyltransferase (GNAT) domain NRK99_15290 PF00043 Glutathione S-transferase, C-terminal domain NRK99_15290 PF13417 Glutathione S-transferase, N-terminal domain NRK99_15295 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NRK99_15295 PF01243 Pyridoxamine 5'-phosphate oxidase NRK99_15310 PF01189 16S rRNA methyltransferase RsmB/F NRK99_15310 PF01029 NusB family NRK99_15315 PF00462 Glutaredoxin NRK99_15320 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRK99_15320 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRK99_15325 PF04333 MlaA lipoprotein NRK99_15335 PF03918 Cytochrome C biogenesis protein NRK99_15340 PF08534 Redoxin NRK99_15345 PF01578 Cytochrome C assembly protein NRK99_15345 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRK99_15350 PF03100 CcmE NRK99_15355 PF04995 Heme exporter protein D (CcmD) NRK99_15360 PF01578 Cytochrome C assembly protein NRK99_15365 PF03379 CcmB protein NRK99_15370 PF00005 ABC transporter NRK99_15380 PF01584 CheW-like domain NRK99_15390 PF13614 AAA domain NRK99_15395 PF00691 OmpA family NRK99_15395 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRK99_15400 PF01618 MotA/TolQ/ExbB proton channel family NRK99_15405 PF01339 CheB methylesterase NRK99_15405 PF00072 Response regulator receiver domain NRK99_15410 PF01627 Hpt domain NRK99_15410 PF00072 Response regulator receiver domain NRK99_15410 PF02895 Signal transducing histidine kinase, homodimeric domain NRK99_15410 PF01584 CheW-like domain NRK99_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_15415 PF04344 Chemotaxis phosphatase, CheZ NRK99_15420 PF00072 Response regulator receiver domain NRK99_15425 PF04545 Sigma-70, region 4 NRK99_15425 PF04539 Sigma-70 region 3 NRK99_15425 PF04542 Sigma-70 region 2 NRK99_15430 PF10609 NUBPL iron-transfer P-loop NTPase NRK99_15435 PF00448 SRP54-type protein, GTPase domain NRK99_15440 PF00771 FHIPEP family NRK99_15445 PF01312 FlhB HrpN YscU SpaS Family NRK99_15450 PF01311 Bacterial export proteins, family 1 NRK99_15455 PF01313 Bacterial export proteins, family 3 NRK99_15460 PF00813 FliP family NRK99_15465 PF04347 Flagellar biosynthesis protein, FliO NRK99_15470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRK99_15475 PF02154 Flagellar motor switch protein FliM NRK99_15475 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRK99_15495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK99_15495 PF18269 T3SS EscN ATPase C-terminal domain NRK99_15505 PF01706 FliG C-terminal domain NRK99_15505 PF14841 FliG middle domain NRK99_15505 PF14842 FliG N-terminal domain NRK99_15510 PF08345 Flagellar M-ring protein C-terminal NRK99_15510 PF01514 Secretory protein of YscJ/FliF family NRK99_15515 PF02049 Flagellar hook-basal body complex protein FliE NRK99_15530 PF03960 ArsC family NRK99_15535 PF01758 Sodium Bile acid symporter family NRK99_15540 PF02374 Anion-transporting ATPase NRK99_15545 PF06953 Arsenical resistance operon trans-acting repressor ArsD NRK99_15550 PF01022 Bacterial regulatory protein, arsR family NRK99_15555 PF02001 Protein of unknown function DUF134 NRK99_15565 PF00072 Response regulator receiver domain NRK99_15570 PF04055 Radical SAM superfamily NRK99_15570 PF18693 TRAM domain NRK99_15570 PF00919 Uncharacterized protein family UPF0004 NRK99_15575 PF00072 Response regulator receiver domain NRK99_15575 PF00486 Transcriptional regulatory protein, C terminal NRK99_15580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_15585 PF02685 Glucokinase NRK99_15590 PF01418 Helix-turn-helix domain, rpiR family NRK99_15590 PF01380 SIS domain NRK99_15595 PF00224 Pyruvate kinase, barrel domain NRK99_15595 PF02887 Pyruvate kinase, alpha/beta domain NRK99_15605 PF00873 AcrB/AcrD/AcrF family NRK99_15610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK99_15610 PF09317 Domain of unknown function (DUF1974) NRK99_15610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK99_15610 PF02770 Acyl-CoA dehydrogenase, middle domain NRK99_15615 PF00440 Bacterial regulatory proteins, tetR family NRK99_15630 PF00384 Molybdopterin oxidoreductase NRK99_15635 PF02634 FdhD/NarQ family NRK99_15640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_15640 PF03466 LysR substrate binding domain NRK99_15660 PF00936 BMC domain NRK99_15665 PF00936 BMC domain NRK99_15670 PF00936 BMC domain NRK99_15675 PF00171 Aldehyde dehydrogenase family NRK99_15675 PF00465 Iron-containing alcohol dehydrogenase NRK99_15685 PF00465 Iron-containing alcohol dehydrogenase NRK99_15685 PF00171 Aldehyde dehydrogenase family NRK99_15690 PF02901 Pyruvate formate lyase-like NRK99_15690 PF01228 Glycine radical NRK99_15695 PF04055 Radical SAM superfamily NRK99_15695 PF13187 4Fe-4S dicluster domain NRK99_15700 PF00936 BMC domain NRK99_15705 PF06130 Phosphate propanoyltransferase NRK99_15715 PF00893 Small Multidrug Resistance protein NRK99_15720 PF00893 Small Multidrug Resistance protein NRK99_15725 PF13426 PAS domain NRK99_15725 PF00512 His Kinase A (phospho-acceptor) domain NRK99_15725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_15725 PF00672 HAMP domain NRK99_15730 PF00486 Transcriptional regulatory protein, C terminal NRK99_15730 PF00072 Response regulator receiver domain NRK99_15735 PF00529 HlyD membrane-fusion protein of T1SS NRK99_15735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_15740 PF00873 AcrB/AcrD/AcrF family NRK99_15745 PF07690 Major Facilitator Superfamily NRK99_15760 PF01476 LysM domain NRK99_15760 PF17969 L,D-transpeptidase C-terminal domain NRK99_15760 PF03734 L,D-transpeptidase catalytic domain NRK99_15770 PF01575 MaoC like domain NRK99_15775 PF05971 RNA methyltransferase NRK99_15780 PF00877 NlpC/P60 family NRK99_15785 PF01648 4'-phosphopantetheinyl transferase superfamily NRK99_15790 PF00085 Thioredoxin NRK99_15800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRK99_15805 PF01842 ACT domain NRK99_15805 PF00551 Formyl transferase NRK99_15815 PF13091 PLD-like domain NRK99_15815 PF13396 Phospholipase_D-nuclease N-terminal NRK99_15830 PF01551 Peptidase family M23 NRK99_15835 PF00128 Alpha amylase, catalytic domain NRK99_15840 PF10145 Phage-related minor tail protein NRK99_15840 PF01464 Transglycosylase SLT domain NRK99_15840 PF01551 Peptidase family M23 NRK99_15845 PF00230 Major intrinsic protein NRK99_15850 PF02075 Crossover junction endodeoxyribonuclease RuvC NRK99_15855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRK99_15910 PF08497 Radical SAM N-terminal NRK99_15910 PF04055 Radical SAM superfamily NRK99_15910 PF11842 Domain of unknown function (DUF3362) NRK99_15920 PF00873 AcrB/AcrD/AcrF family NRK99_15925 PF00529 HlyD membrane-fusion protein of T1SS NRK99_15925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_15930 PF00990 Diguanylate cyclase, GGDEF domain NRK99_15935 PF01734 Patatin-like phospholipase NRK99_15940 PF00209 Sodium:neurotransmitter symporter family NRK99_15955 PF01389 OmpA-like transmembrane domain NRK99_15955 PF00691 OmpA family NRK99_15960 PF00691 OmpA family NRK99_15960 PF01389 OmpA-like transmembrane domain NRK99_15965 PF00691 OmpA family NRK99_15965 PF01389 OmpA-like transmembrane domain NRK99_15970 PF00390 Malic enzyme, N-terminal domain NRK99_15970 PF03949 Malic enzyme, NAD binding domain NRK99_15975 PF06719 AraC-type transcriptional regulator N-terminus NRK99_15975 PF12833 Helix-turn-helix domain NRK99_15980 PF01554 MatE NRK99_15985 PF10692 Protein of unknown function (DUF2498) NRK99_15990 PF00990 Diguanylate cyclase, GGDEF domain NRK99_15990 PF00072 Response regulator receiver domain NRK99_15995 PF00860 Permease family NRK99_16010 PF04829 Pre-toxin domain with VENN motif NRK99_16010 PF15526 Novel toxin 21 NRK99_16010 PF05860 haemagglutination activity domain NRK99_16010 PF13332 Hemagglutinin repeat NRK99_16010 PF05594 Haemagluttinin repeat NRK99_16010 PF04829 Pre-toxin domain with VENN motif NRK99_16010 PF15526 Novel toxin 21 NRK99_16010 PF05860 haemagglutination activity domain NRK99_16010 PF05594 Haemagluttinin repeat NRK99_16010 PF13332 Hemagglutinin repeat NRK99_16015 PF17287 POTRA domain NRK99_16015 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NRK99_16015 PF08479 POTRA domain, ShlB-type NRK99_16020 PF01235 Sodium:alanine symporter family NRK99_16025 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRK99_16025 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRK99_16030 PF01699 Sodium/calcium exchanger protein NRK99_16035 PF08534 Redoxin NRK99_16045 PF00293 NUDIX domain NRK99_16055 PF00005 ABC transporter NRK99_16060 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_16065 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_16070 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_16085 PF00005 ABC transporter NRK99_16090 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRK99_16090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRK99_16100 PF03932 CutC family NRK99_16105 PF00480 ROK family NRK99_16115 PF01435 Peptidase family M48 NRK99_16120 PF12849 PBP superfamily domain NRK99_16125 PF11808 Phosphate regulon sensor protein PhoR NRK99_16125 PF00989 PAS fold NRK99_16125 PF00512 His Kinase A (phospho-acceptor) domain NRK99_16125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_16130 PF00072 Response regulator receiver domain NRK99_16130 PF00486 Transcriptional regulatory protein, C terminal NRK99_16135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK99_16140 PF02515 CoA-transferase family III NRK99_16145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRK99_16145 PF02770 Acyl-CoA dehydrogenase, middle domain NRK99_16145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRK99_16150 PF00158 Sigma-54 interaction domain NRK99_16150 PF02954 Bacterial regulatory protein, Fis family NRK99_16150 PF01590 GAF domain NRK99_16155 PF00171 Aldehyde dehydrogenase family NRK99_16165 PF00892 EamA-like transporter family NRK99_16170 PF12431 Transcriptional regulator NRK99_16170 PF00072 Response regulator receiver domain NRK99_16175 PF17203 Single cache domain 3 NRK99_16175 PF00989 PAS fold NRK99_16175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_16175 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRK99_16180 PF03949 Malic enzyme, NAD binding domain NRK99_16180 PF00390 Malic enzyme, N-terminal domain NRK99_16185 PF03390 2-hydroxycarboxylate transporter family NRK99_16195 PF01047 MarR family NRK99_16200 PF00529 HlyD membrane-fusion protein of T1SS NRK99_16200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_16225 PF01679 Proteolipid membrane potential modulator NRK99_16235 PF03477 ATP cone domain NRK99_16235 PF13597 Anaerobic ribonucleoside-triphosphate reductase NRK99_16245 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NRK99_16245 PF01653 NAD-dependent DNA ligase adenylation domain NRK99_16245 PF00533 BRCA1 C Terminus (BRCT) domain NRK99_16245 PF03120 NAD-dependent DNA ligase OB-fold domain NRK99_16245 PF12826 Helix-hairpin-helix motif NRK99_16250 PF04354 ZipA, C-terminal FtsZ-binding domain NRK99_16255 PF02463 RecF/RecN/SMC N terminal domain NRK99_16255 PF06470 SMC proteins Flexible Hinge Domain NRK99_16265 PF03458 UPF0126 domain NRK99_16275 PF05951 Bacterial protein of unknown function (DUF882) NRK99_16280 PF01471 Putative peptidoglycan binding domain NRK99_16280 PF03734 L,D-transpeptidase catalytic domain NRK99_16295 PF00535 Glycosyl transferase family 2 NRK99_16310 PF00128 Alpha amylase, catalytic domain NRK99_16320 PF00196 Bacterial regulatory proteins, luxR family NRK99_16320 PF00072 Response regulator receiver domain NRK99_16340 PF02254 TrkA-N domain NRK99_16340 PF02080 TrkA-C domain NRK99_16340 PF00999 Sodium/hydrogen exchanger family NRK99_16345 PF00990 Diguanylate cyclase, GGDEF domain NRK99_16350 PF01171 PP-loop family NRK99_16350 PF09179 TilS substrate binding domain NRK99_16350 PF11734 TilS substrate C-terminal domain NRK99_16355 PF01431 Peptidase family M13 NRK99_16355 PF05649 Peptidase family M13 NRK99_16365 PF02086 D12 class N6 adenine-specific DNA methyltransferase NRK99_16375 PF01761 3-dehydroquinate synthase NRK99_16380 PF01202 Shikimate kinase NRK99_16385 PF07660 Secretin and TonB N terminus short domain NRK99_16385 PF11741 AMIN domain NRK99_16385 PF00263 Bacterial type II and III secretion system protein NRK99_16385 PF03958 Bacterial type II/III secretion system short domain NRK99_16395 PF04350 Pilus assembly protein, PilO NRK99_16405 PF11104 Type IV pilus assembly protein PilM; NRK99_16410 PF00905 Penicillin binding protein transpeptidase domain NRK99_16410 PF17092 Penicillin-binding protein OB-like domain NRK99_16410 PF00912 Transglycosylase NRK99_16415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_16415 PF03466 LysR substrate binding domain NRK99_16420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_16420 PF00672 HAMP domain NRK99_16435 PF03466 LysR substrate binding domain NRK99_16435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_16450 PF01551 Peptidase family M23 NRK99_16450 PF01476 LysM domain NRK99_16450 PF08525 Opacity-associated protein A N-terminal motif NRK99_16460 PF12795 Mechanosensitive ion channel porin domain NRK99_16460 PF00924 Mechanosensitive ion channel NRK99_16460 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRK99_16465 PF03009 Glycerophosphoryl diester phosphodiesterase family NRK99_16470 PF00672 HAMP domain NRK99_16470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_16470 PF02743 Cache domain NRK99_16475 PF00890 FAD binding domain NRK99_16475 PF02910 Fumarate reductase flavoprotein C-term NRK99_16480 PF13085 2Fe-2S iron-sulfur cluster binding domain NRK99_16480 PF13183 4Fe-4S dicluster domain NRK99_16485 PF02300 Fumarate reductase subunit C NRK99_16490 PF02313 Fumarate reductase subunit D NRK99_16510 PF06224 Winged helix DNA-binding domain NRK99_16525 PF00501 AMP-binding enzyme NRK99_16545 PF00486 Transcriptional regulatory protein, C terminal NRK99_16545 PF00072 Response regulator receiver domain NRK99_16550 PF00512 His Kinase A (phospho-acceptor) domain NRK99_16550 PF08521 Two-component sensor kinase N-terminal NRK99_16550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_16570 PF00478 IMP dehydrogenase / GMP reductase domain NRK99_16580 PF09285 Elongation factor P, C-terminal NRK99_16580 PF08207 Elongation factor P (EF-P) KOW-like domain NRK99_16580 PF01132 Elongation factor P (EF-P) OB domain NRK99_16585 PF09997 Predicted membrane protein (DUF2238) NRK99_16595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK99_16595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK99_16605 PF00990 Diguanylate cyclase, GGDEF domain NRK99_16615 PF13419 Haloacid dehalogenase-like hydrolase NRK99_16625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_16625 PF03466 LysR substrate binding domain NRK99_16630 PF00990 Diguanylate cyclase, GGDEF domain NRK99_16630 PF05230 MASE2 domain NRK99_16640 PF00857 Isochorismatase family NRK99_16645 PF01494 FAD binding domain NRK99_16650 PF04055 Radical SAM superfamily NRK99_16650 PF01938 TRAM domain NRK99_16650 PF00919 Uncharacterized protein family UPF0004 NRK99_16655 PF02562 PhoH-like protein NRK99_16660 PF02130 Uncharacterized protein family UPF0054 NRK99_16665 PF00571 CBS domain NRK99_16665 PF03471 Transporter associated domain NRK99_16670 PF00795 Carbon-nitrogen hydrolase NRK99_16675 PF07295 Zinc-ribbon containing domain NRK99_16680 PF08264 Anticodon-binding domain of tRNA NRK99_16680 PF00133 tRNA synthetases class I (I, L, M and V) NRK99_16680 PF13603 Leucyl-tRNA synthetase, Domain 2 NRK99_16695 PF01467 Cytidylyltransferase-like NRK99_16705 PF02590 Predicted SPOUT methyltransferase NRK99_16710 PF00905 Penicillin binding protein transpeptidase domain NRK99_16710 PF03717 Penicillin-binding Protein dimerisation domain NRK99_16715 PF01098 Cell cycle protein NRK99_16720 PF13406 Transglycosylase SLT domain NRK99_16725 PF03330 Lytic transglycolase NRK99_16725 PF05036 Sporulation related domain NRK99_16730 PF07943 Penicillin-binding protein 5, C-terminal domain NRK99_16730 PF00768 D-alanyl-D-alanine carboxypeptidase NRK99_16735 PF04359 Protein of unknown function (DUF493) NRK99_16740 PF03099 Biotin/lipoate A/B protein ligase family NRK99_16745 PF04055 Radical SAM superfamily NRK99_16745 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NRK99_16750 PF06821 Serine hydrolase NRK99_16755 PF02508 Rnf-Nqr subunit, membrane protein NRK99_16770 PF13411 MerR HTH family regulatory protein NRK99_16775 PF01368 DHH family NRK99_16775 PF02272 DHHA1 domain NRK99_16775 PF17768 RecJ OB domain NRK99_16785 PF01741 Large-conductance mechanosensitive channel, MscL NRK99_16790 PF00990 Diguanylate cyclase, GGDEF domain NRK99_16795 PF02899 Phage integrase, N-terminal SAM-like domain NRK99_16795 PF00589 Phage integrase family NRK99_16800 PF00258 Flavodoxin NRK99_16805 PF01523 Putative modulator of DNA gyrase NRK99_16810 PF01523 Putative modulator of DNA gyrase NRK99_16820 PF17969 L,D-transpeptidase C-terminal domain NRK99_16820 PF03734 L,D-transpeptidase catalytic domain NRK99_16825 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NRK99_16830 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRK99_16850 PF03575 Peptidase family S51 NRK99_16855 PF10415 Fumarase C C-terminus NRK99_16855 PF00206 Lyase NRK99_16865 PF02635 DsrE/DsrF-like family NRK99_16870 PF00990 Diguanylate cyclase, GGDEF domain NRK99_16875 PF07690 Major Facilitator Superfamily NRK99_16880 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NRK99_16880 PF01138 3' exoribonuclease family, domain 1 NRK99_16880 PF03725 3' exoribonuclease family, domain 2 NRK99_16880 PF00575 S1 RNA binding domain NRK99_16880 PF00013 KH domain NRK99_16885 PF00312 Ribosomal protein S15 NRK99_16890 PF01509 TruB family pseudouridylate synthase (N terminal domain) NRK99_16890 PF09157 Pseudouridine synthase II TruB, C-terminal NRK99_16890 PF16198 tRNA pseudouridylate synthase B C-terminal domain NRK99_16895 PF02033 Ribosome-binding factor A NRK99_16900 PF00009 Elongation factor Tu GTP binding domain NRK99_16900 PF11987 Translation-initiation factor 2 NRK99_16900 PF08364 Bacterial translation initiation factor IF-2 associated region NRK99_16900 PF04760 Translation initiation factor IF-2, N-terminal region NRK99_16905 PF13184 NusA-like KH domain NRK99_16905 PF08529 NusA N-terminal domain NRK99_16905 PF00575 S1 RNA binding domain NRK99_16910 PF02576 RimP N-terminal domain NRK99_16910 PF17384 RimP C-terminal SH3 domain NRK99_16925 PF03840 Preprotein translocase SecG subunit NRK99_16930 PF00121 Triosephosphate isomerase NRK99_16935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRK99_16935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRK99_16935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRK99_16935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRK99_16940 PF00809 Pterin binding enzyme NRK99_16945 PF00004 ATPase family associated with various cellular activities (AAA) NRK99_16945 PF17862 AAA+ lid domain NRK99_16945 PF06480 FtsH Extracellular NRK99_16945 PF01434 Peptidase family M41 NRK99_16950 PF01728 FtsJ-like methyltransferase NRK99_16955 PF01985 CRS1 / YhbY (CRM) domain NRK99_16965 PF01272 Transcription elongation factor, GreA/GreB, C-term NRK99_16965 PF03449 Transcription elongation factor, N-terminal NRK99_16970 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRK99_16970 PF00691 OmpA family NRK99_16975 PF01618 MotA/TolQ/ExbB proton channel family NRK99_16980 PF02609 Exonuclease VII small subunit NRK99_16985 PF00348 Polyprenyl synthetase NRK99_16990 PF02780 Transketolase, C-terminal domain NRK99_16990 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NRK99_16990 PF02779 Transketolase, pyrimidine binding domain NRK99_16995 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_16995 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK99_17000 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_17005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_17010 PF00005 ABC transporter NRK99_17010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK99_17015 PF04608 Phosphatidylglycerophosphatase A NRK99_17020 PF00586 AIR synthase related protein, N-terminal domain NRK99_17020 PF02769 AIR synthase related protein, C-terminal domain NRK99_17025 PF01029 NusB family NRK99_17030 PF00885 6,7-dimethyl-8-ribityllumazine synthase NRK99_17035 PF00925 GTP cyclohydrolase II NRK99_17035 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRK99_17040 PF00677 Lumazine binding domain NRK99_17045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRK99_17045 PF01872 RibD C-terminal domain NRK99_17050 PF03477 ATP cone domain NRK99_17065 PF00464 Serine hydroxymethyltransferase NRK99_17075 PF00072 Response regulator receiver domain NRK99_17075 PF01627 Hpt domain NRK99_17075 PF00512 His Kinase A (phospho-acceptor) domain NRK99_17075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_17075 PF00672 HAMP domain NRK99_17080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRK99_17090 PF00072 Response regulator receiver domain NRK99_17090 PF00486 Transcriptional regulatory protein, C terminal NRK99_17095 PF03264 NapC/NirT cytochrome c family, N-terminal region NRK99_17100 PF18364 Molybdopterin oxidoreductase N-terminal domain NRK99_17100 PF01568 Molydopterin dinucleotide binding domain NRK99_17100 PF00384 Molybdopterin oxidoreductase NRK99_17105 PF02613 Nitrate reductase delta subunit NRK99_17125 PF00563 EAL domain NRK99_17125 PF00990 Diguanylate cyclase, GGDEF domain NRK99_17125 PF03707 Bacterial signalling protein N terminal repeat NRK99_17125 PF13188 PAS domain NRK99_17135 PF16177 Acetyl-coenzyme A synthetase N-terminus NRK99_17135 PF00501 AMP-binding enzyme NRK99_17135 PF13193 AMP-binding enzyme C-terminal domain NRK99_17140 PF01220 Dehydroquinase class II NRK99_17145 PF00364 Biotin-requiring enzyme NRK99_17150 PF02785 Biotin carboxylase C-terminal domain NRK99_17150 PF00289 Biotin carboxylase, N-terminal domain NRK99_17150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRK99_17155 PF06196 Protein of unknown function (DUF997) NRK99_17160 PF00474 Sodium:solute symporter family NRK99_17165 PF02378 Phosphotransferase system, EIIC NRK99_17165 PF00367 phosphotransferase system, EIIB NRK99_17165 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRK99_17170 PF03466 LysR substrate binding domain NRK99_17170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_17175 PF00107 Zinc-binding dehydrogenase NRK99_17175 PF08240 Alcohol dehydrogenase GroES-like domain NRK99_17185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK99_17185 PF01842 ACT domain NRK99_17185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK99_17190 PF14602 Hexapeptide repeat of succinyl-transferase NRK99_17190 PF12464 Maltose acetyltransferase NRK99_17195 PF00881 Nitroreductase family NRK99_17200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRK99_17200 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_17205 PF01343 Peptidase family S49 NRK99_17220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRK99_17220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRK99_17225 PF07023 Protein of unknown function (DUF1315) NRK99_17230 PF00710 Asparaginase, N-terminal NRK99_17230 PF17763 Glutaminase/Asparaginase C-terminal domain NRK99_17235 PF03616 Sodium/glutamate symporter NRK99_17240 PF02743 Cache domain NRK99_17240 PF00672 HAMP domain NRK99_17240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_17250 PF00152 tRNA synthetases class II (D, K and N) NRK99_17250 PF01336 OB-fold nucleic acid binding domain NRK99_17255 PF02567 Phenazine biosynthesis-like protein NRK99_17260 PF00175 Oxidoreductase NAD-binding domain NRK99_17260 PF00667 FAD binding domain NRK99_17260 PF00258 Flavodoxin NRK99_17265 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRK99_17265 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRK99_17270 PF01507 Phosphoadenosine phosphosulfate reductase family NRK99_17275 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRK99_17280 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_17285 PF00005 ABC transporter NRK99_17285 PF00571 CBS domain NRK99_17290 PF00186 Dihydrofolate reductase NRK99_17295 PF12821 Threonine/Serine exporter, ThrE NRK99_17300 PF06738 Putative threonine/serine exporter NRK99_17310 PF00994 Probable molybdopterin binding domain NRK99_17320 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK99_17320 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK99_17335 PF00109 Beta-ketoacyl synthase, N-terminal domain NRK99_17335 PF02801 Beta-ketoacyl synthase, C-terminal domain NRK99_17360 PF00221 Aromatic amino acid lyase NRK99_17370 PF07977 FabA-like domain NRK99_17375 PF00501 AMP-binding enzyme NRK99_17375 PF13193 AMP-binding enzyme C-terminal domain NRK99_17385 PF00550 Phosphopantetheine attachment site NRK99_17390 PF00550 Phosphopantetheine attachment site NRK99_17425 PF03150 Di-haem cytochrome c peroxidase NRK99_17425 PF00034 Cytochrome c NRK99_17430 PF00194 Eukaryotic-type carbonic anhydrase NRK99_17435 PF04227 Indigoidine synthase A like protein NRK99_17440 PF00294 pfkB family carbohydrate kinase NRK99_17460 PF00582 Universal stress protein family NRK99_17475 PF01472 PUA domain NRK99_17475 PF00696 Amino acid kinase family NRK99_17480 PF07417 Sigma factor-binding transcriptional regulator Crl NRK99_17485 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NRK99_17490 PF00156 Phosphoribosyl transferase domain NRK99_17495 PF07687 Peptidase dimerisation domain NRK99_17495 PF01546 Peptidase family M20/M25/M40 NRK99_17500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK99_17500 PF00005 ABC transporter NRK99_17505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRK99_17505 PF00005 ABC transporter NRK99_17515 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_17515 PF12911 N-terminal TM domain of oligopeptide transport permease C NRK99_17520 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_17525 PF00593 TonB dependent receptor NRK99_17525 PF07715 TonB-dependent Receptor Plug Domain NRK99_17535 PF01618 MotA/TolQ/ExbB proton channel family NRK99_17540 PF01618 MotA/TolQ/ExbB proton channel family NRK99_17545 PF02472 Biopolymer transport protein ExbD/TolR NRK99_17560 PF06483 Chitinase C NRK99_17560 PF00704 Glycosyl hydrolases family 18 NRK99_17595 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRK99_17600 PF00672 HAMP domain NRK99_17600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_17610 PF00313 'Cold-shock' DNA-binding domain NRK99_17650 PF00929 Exonuclease NRK99_17655 PF03193 RsgA GTPase NRK99_17660 PF02666 Phosphatidylserine decarboxylase NRK99_17665 PF09905 DNA-binding protein VF530 NRK99_17685 PF03707 Bacterial signalling protein N terminal repeat NRK99_17685 PF00990 Diguanylate cyclase, GGDEF domain NRK99_17685 PF00563 EAL domain NRK99_17690 PF06877 Regulator of ribonuclease activity B NRK99_17695 PF05547 Immune inhibitor A peptidase M6 NRK99_17695 PF00801 PKD domain NRK99_17710 PF00561 alpha/beta hydrolase fold NRK99_17715 PF00664 ABC transporter transmembrane region NRK99_17715 PF00005 ABC transporter NRK99_17720 PF06004 Bacterial protein of unknown function (DUF903) NRK99_17725 PF05922 Peptidase inhibitor I9 NRK99_17725 PF00082 Subtilase family NRK99_17730 PF00581 Rhodanese-like domain NRK99_17735 PF04960 Glutaminase NRK99_17740 PF04320 Protein with unknown function (DUF469) NRK99_17745 PF02390 Putative methyltransferase NRK99_17750 PF01483 Proprotein convertase P-domain NRK99_17750 PF04389 Peptidase family M28 NRK99_17755 PF00155 Aminotransferase class I and II NRK99_17760 PF12792 CSS motif domain associated with EAL NRK99_17760 PF00563 EAL domain NRK99_17765 PF08338 Domain of unknown function (DUF1731) NRK99_17765 PF01370 NAD dependent epimerase/dehydratase family NRK99_17775 PF00005 ABC transporter NRK99_17780 PF13472 GDSL-like Lipase/Acylhydrolase family NRK99_17785 PF01584 CheW-like domain NRK99_17785 PF00072 Response regulator receiver domain NRK99_17805 PF02080 TrkA-C domain NRK99_17805 PF06826 Predicted Permease Membrane Region NRK99_17810 PF03006 Haemolysin-III related NRK99_17815 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRK99_17820 PF04279 Intracellular septation protein A NRK99_17825 PF03795 YCII-related domain NRK99_17830 PF00459 Inositol monophosphatase family NRK99_17840 PF00483 Nucleotidyl transferase NRK99_17845 PF00854 POT family NRK99_17850 PF00072 Response regulator receiver domain NRK99_17880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_17885 PF02321 Outer membrane efflux protein NRK99_17890 PF01207 Dihydrouridine synthase (Dus) NRK99_17895 PF02954 Bacterial regulatory protein, Fis family NRK99_17925 PF01521 Iron-sulphur cluster biosynthesis NRK99_17935 PF00654 Voltage gated chloride channel NRK99_17940 PF00202 Aminotransferase class-III NRK99_17955 PF01569 PAP2 superfamily NRK99_17965 PF11849 Domain of unknown function (DUF3369) NRK99_17975 PF00893 Small Multidrug Resistance protein NRK99_17980 PF00893 Small Multidrug Resistance protein NRK99_17985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK99_17990 PF14814 Bifunctional transglycosylase second domain NRK99_17990 PF00912 Transglycosylase NRK99_17990 PF00905 Penicillin binding protein transpeptidase domain NRK99_17995 PF00270 DEAD/DEAH box helicase NRK99_17995 PF04408 Helicase associated domain (HA2) NRK99_17995 PF00271 Helicase conserved C-terminal domain NRK99_17995 PF08482 ATP-dependent helicase C-terminal NRK99_18005 PF03749 Sugar fermentation stimulation protein RE domain NRK99_18005 PF17746 SfsA N-terminal OB domain NRK99_18010 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRK99_18015 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRK99_18020 PF01743 Poly A polymerase head domain NRK99_18020 PF12626 Polymerase A arginine-rich C-terminus NRK99_18020 PF12627 Probable RNA and SrmB- binding site of polymerase A NRK99_18025 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRK99_18030 PF02548 Ketopantoate hydroxymethyltransferase NRK99_18035 PF02569 Pantoate-beta-alanine ligase NRK99_18065 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRK99_18070 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NRK99_18075 PF01061 ABC-2 type transporter NRK99_18080 PF00005 ABC transporter NRK99_18085 PF00156 Phosphoribosyl transferase domain NRK99_18090 PF00440 Bacterial regulatory proteins, tetR family NRK99_18095 PF02441 Flavoprotein NRK99_18100 PF01225 Mur ligase family, catalytic domain NRK99_18100 PF02875 Mur ligase family, glutamate ligase domain NRK99_18100 PF08245 Mur ligase middle domain NRK99_18105 PF00719 Inorganic pyrophosphatase NRK99_18120 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NRK99_18135 PF00005 ABC transporter NRK99_18155 PF08447 PAS fold NRK99_18155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_18160 PF02798 Glutathione S-transferase, N-terminal domain NRK99_18160 PF00043 Glutathione S-transferase, C-terminal domain NRK99_18190 PF03600 Citrate transporter NRK99_18190 PF02080 TrkA-C domain NRK99_18195 PF00009 Elongation factor Tu GTP binding domain NRK99_18200 PF01507 Phosphoadenosine phosphosulfate reductase family NRK99_18205 PF10414 Sirohaem synthase dimerisation region NRK99_18205 PF14824 Sirohaem biosynthesis protein central NRK99_18205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRK99_18210 PF01145 SPFH domain / Band 7 family NRK99_18210 PF16200 C-terminal region of band_7 NRK99_18215 PF01957 NfeD-like C-terminal, partner-binding NRK99_18220 PF00571 CBS domain NRK99_18220 PF01380 SIS domain NRK99_18225 PF12848 ABC transporter NRK99_18225 PF00005 ABC transporter NRK99_18235 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NRK99_18275 PF00474 Sodium:solute symporter family NRK99_18280 PF03734 L,D-transpeptidase catalytic domain NRK99_18280 PF17969 L,D-transpeptidase C-terminal domain NRK99_18285 PF00924 Mechanosensitive ion channel NRK99_18290 PF00871 Acetokinase family NRK99_18295 PF04074 YhcH/YjgK/YiaL NRK99_18305 PF00394 Multicopper oxidase NRK99_18305 PF07731 Multicopper oxidase NRK99_18305 PF07732 Multicopper oxidase NRK99_18310 PF01177 Asp/Glu/Hydantoin racemase NRK99_18315 PF01810 LysE type translocator NRK99_18325 PF00155 Aminotransferase class I and II NRK99_18325 PF00392 Bacterial regulatory proteins, gntR family NRK99_18350 PF00209 Sodium:neurotransmitter symporter family NRK99_18360 PF00209 Sodium:neurotransmitter symporter family NRK99_18380 PF07690 Major Facilitator Superfamily NRK99_18390 PF01037 Lrp/AsnC ligand binding domain NRK99_18405 PF01047 MarR family NRK99_18410 PF00107 Zinc-binding dehydrogenase NRK99_18410 PF16884 N-terminal domain of oxidoreductase NRK99_18415 PF00293 NUDIX domain NRK99_18425 PF01641 SelR domain NRK99_18430 PF00128 Alpha amylase, catalytic domain NRK99_18430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRK99_18435 PF00128 Alpha amylase, catalytic domain NRK99_18435 PF02806 Alpha amylase, C-terminal all-beta domain NRK99_18435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRK99_18440 PF02446 4-alpha-glucanotransferase NRK99_18445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRK99_18445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRK99_18450 PF01263 Aldose 1-epimerase NRK99_18455 PF02445 Quinolinate synthetase A protein NRK99_18460 PF00672 HAMP domain NRK99_18460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_18535 PF16331 TolA binding protein trimerisation NRK99_18535 PF13174 Tetratricopeptide repeat NRK99_18540 PF00691 OmpA family NRK99_18545 PF04052 TolB amino-terminal domain NRK99_18545 PF07676 WD40-like Beta Propeller Repeat NRK99_18555 PF02472 Biopolymer transport protein ExbD/TolR NRK99_18560 PF01618 MotA/TolQ/ExbB proton channel family NRK99_18565 PF03061 Thioesterase superfamily NRK99_18570 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) NRK99_18575 PF08173 Membrane bound YbgT-like protein NRK99_18580 PF02322 Cytochrome bd terminal oxidase subunit II NRK99_18585 PF01654 Cytochrome bd terminal oxidase subunit I NRK99_18590 PF17864 RuvB AAA lid domain NRK99_18590 PF05491 RuvB C-terminal winged helix domain NRK99_18590 PF05496 Holliday junction DNA helicase RuvB P-loop domain NRK99_18595 PF01330 RuvA N terminal domain NRK99_18595 PF07499 RuvA, C-terminal domain NRK99_18600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_18600 PF00672 HAMP domain NRK99_18605 PF03129 Anticodon binding domain NRK99_18605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRK99_18605 PF04073 Aminoacyl-tRNA editing domain NRK99_18610 PF00106 short chain dehydrogenase NRK99_18625 PF00378 Enoyl-CoA hydratase/isomerase NRK99_18630 PF10952 Protein of unknown function (DUF2753) NRK99_18635 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_18645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRK99_18660 PF02594 Uncharacterised ACR, YggU family COG1872 NRK99_18665 PF02325 YGGT family NRK99_18670 PF03807 NADP oxidoreductase coenzyme F420-dependent NRK99_18670 PF14748 Pyrroline-5-carboxylate reductase dimerisation NRK99_18675 PF01168 Alanine racemase, N-terminal domain NRK99_18680 PF00437 Type II/IV secretion system protein NRK99_18685 PF00437 Type II/IV secretion system protein NRK99_18690 PF03883 Peroxide stress protein YaaA NRK99_18695 PF00270 DEAD/DEAH box helicase NRK99_18695 PF00271 Helicase conserved C-terminal domain NRK99_18700 PF05175 Methyltransferase small domain NRK99_18705 PF05525 Branched-chain amino acid transport protein NRK99_18710 PF05525 Branched-chain amino acid transport protein NRK99_18725 PF01475 Ferric uptake regulator family NRK99_18730 PF01207 Dihydrouridine synthase (Dus) NRK99_18745 PF00216 Bacterial DNA-binding protein NRK99_18755 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NRK99_18760 PF07238 PilZ domain NRK99_18765 PF18073 Rubredoxin metal binding domain NRK99_18780 PF18429 Domain of unknown function (DUF5609) NRK99_18790 PF13426 PAS domain NRK99_18790 PF00563 EAL domain NRK99_18790 PF00990 Diguanylate cyclase, GGDEF domain NRK99_18790 PF05231 MASE1 NRK99_18790 PF08448 PAS fold NRK99_18790 PF08447 PAS fold NRK99_18795 PF01048 Phosphorylase superfamily NRK99_18800 PF01676 Metalloenzyme superfamily NRK99_18805 PF00591 Glycosyl transferase family, a/b domain NRK99_18805 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NRK99_18805 PF02885 Glycosyl transferase family, helical bundle domain NRK99_18810 PF01791 DeoC/LacD family aldolase NRK99_18820 PF07670 Nucleoside recognition NRK99_18820 PF07662 Na+ dependent nucleoside transporter C-terminus NRK99_18820 PF01773 Na+ dependent nucleoside transporter N-terminus NRK99_18825 PF01026 TatD related DNase NRK99_18830 PF07963 Prokaryotic N-terminal methylation motif NRK99_18840 PF00583 Acetyltransferase (GNAT) family NRK99_18845 PF01938 TRAM domain NRK99_18845 PF05958 tRNA (Uracil-5-)-methyltransferase NRK99_18850 PF00909 Ammonium Transporter Family NRK99_18855 PF00589 Phage integrase family NRK99_18855 PF02899 Phage integrase, N-terminal SAM-like domain NRK99_19085 PF03739 Lipopolysaccharide export system permease LptF/LptG NRK99_19090 PF03739 Lipopolysaccharide export system permease LptF/LptG NRK99_19095 PF00883 Cytosol aminopeptidase family, catalytic domain NRK99_19095 PF02789 Cytosol aminopeptidase family, N-terminal domain NRK99_19100 PF04364 DNA polymerase III chi subunit, HolC NRK99_19105 PF08264 Anticodon-binding domain of tRNA NRK99_19105 PF00133 tRNA synthetases class I (I, L, M and V) NRK99_19105 PF10458 Valyl tRNA synthetase tRNA binding arm NRK99_19110 PF00571 CBS domain NRK99_19110 PF01595 Cyclin M transmembrane N-terminal domain NRK99_19110 PF03471 Transporter associated domain NRK99_19115 PF09335 SNARE associated Golgi protein NRK99_19120 PF00768 D-alanyl-D-alanine carboxypeptidase NRK99_19155 PF02599 Global regulator protein family NRK99_19160 PF00696 Amino acid kinase family NRK99_19160 PF01842 ACT domain NRK99_19160 PF13840 ACT domain NRK99_19165 PF02272 DHHA1 domain NRK99_19165 PF01411 tRNA synthetases class II (A) NRK99_19165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRK99_19170 PF02631 RecX family NRK99_19175 PF00154 recA bacterial DNA recombination protein NRK99_19180 PF02464 Competence-damaged protein NRK99_19185 PF01624 MutS domain I NRK99_19185 PF05188 MutS domain II NRK99_19185 PF05190 MutS family domain IV NRK99_19185 PF05192 MutS domain III NRK99_19185 PF00488 MutS domain V NRK99_19190 PF02028 BCCT, betaine/carnitine/choline family transporter NRK99_19205 PF04222 Protein of unknown function (DUF416) NRK99_19210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK99_19215 PF01551 Peptidase family M23 NRK99_19215 PF08525 Opacity-associated protein A N-terminal motif NRK99_19215 PF01476 LysM domain NRK99_19235 PF01297 Zinc-uptake complex component A periplasmic NRK99_19240 PF00005 ABC transporter NRK99_19245 PF00950 ABC 3 transport family NRK99_19250 PF03466 LysR substrate binding domain NRK99_19250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_19255 PF00892 EamA-like transporter family NRK99_19260 PF03167 Uracil DNA glycosylase superfamily NRK99_19265 PF00892 EamA-like transporter family NRK99_19275 PF01541 GIY-YIG catalytic domain NRK99_19290 PF04012 PspA/IM30 family NRK99_19295 PF01553 Acyltransferase NRK99_19315 PF00578 AhpC/TSA family NRK99_19325 PF00226 DnaJ domain NRK99_19325 PF01556 DnaJ C terminal domain NRK99_19325 PF00684 DnaJ central domain NRK99_19370 PF03466 LysR substrate binding domain NRK99_19370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_19380 PF02600 Disulfide bond formation protein DsbB NRK99_19385 PF07690 Major Facilitator Superfamily NRK99_19390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_19390 PF03466 LysR substrate binding domain NRK99_19400 PF03989 DNA gyrase C-terminal domain, beta-propeller NRK99_19400 PF00521 DNA gyrase/topoisomerase IV, subunit A NRK99_19405 PF01751 Toprim domain NRK99_19405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_19405 PF00204 DNA gyrase B NRK99_19405 PF00986 DNA gyrase B subunit, carboxyl terminus NRK99_19410 PF04632 Fusaric acid resistance protein family NRK99_19415 PF00529 HlyD membrane-fusion protein of T1SS NRK99_19415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRK99_19420 PF07869 Protein of unknown function (DUF1656) NRK99_19430 PF00293 NUDIX domain NRK99_19435 PF05728 Uncharacterised protein family (UPF0227) NRK99_19440 PF00149 Calcineurin-like phosphoesterase NRK99_19445 PF06853 Protein of unknown function (DUF1249) NRK99_19450 PF00293 NUDIX domain NRK99_19455 PF02321 Outer membrane efflux protein NRK99_19460 PF00294 pfkB family carbohydrate kinase NRK99_19460 PF01467 Cytidylyltransferase-like NRK99_19465 PF03279 Bacterial lipid A biosynthesis acyltransferase NRK99_19480 PF01865 Protein of unknown function DUF47 NRK99_19485 PF01384 Phosphate transporter family NRK99_19490 PF04073 Aminoacyl-tRNA editing domain NRK99_19510 PF00392 Bacterial regulatory proteins, gntR family NRK99_19510 PF00155 Aminotransferase class I and II NRK99_19520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_19520 PF03466 LysR substrate binding domain NRK99_19525 PF03788 LrgA family NRK99_19530 PF04172 LrgB-like family NRK99_19545 PF01743 Poly A polymerase head domain NRK99_19545 PF12627 Probable RNA and SrmB- binding site of polymerase A NRK99_19545 PF01966 HD domain NRK99_19550 PF01471 Putative peptidoglycan binding domain NRK99_19550 PF13401 AAA domain NRK99_19555 PF16537 Type II secretion system protein B NRK99_19560 PF10576 Iron-sulfur binding domain of endonuclease III NRK99_19560 PF00633 Helix-hairpin-helix motif NRK99_19560 PF00730 HhH-GPD superfamily base excision DNA repair protein NRK99_19560 PF14815 NUDIX domain NRK99_19565 PF04362 Bacterial Fe(2+) trafficking NRK99_19570 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NRK99_19570 PF01464 Transglycosylase SLT domain NRK99_19575 PF04076 Bacterial OB fold (BOF) protein NRK99_19580 PF00657 GDSL-like Lipase/Acylhydrolase NRK99_19590 PF01389 OmpA-like transmembrane domain NRK99_19590 PF00691 OmpA family NRK99_19595 PF03886 ABC-type transport auxiliary lipoprotein component NRK99_19600 PF02470 MlaD protein NRK99_19605 PF04403 Paraquat-inducible protein A NRK99_19610 PF17209 Hfq protein NRK99_19615 PF13419 Haloacid dehalogenase-like hydrolase NRK99_19625 PF00360 Phytochrome region NRK99_19625 PF00563 EAL domain NRK99_19625 PF01590 GAF domain NRK99_19625 PF00990 Diguanylate cyclase, GGDEF domain NRK99_19630 PF00701 Dihydrodipicolinate synthetase family NRK99_19635 PF05175 Methyltransferase small domain NRK99_19635 PF08468 Methyltransferase small domain N-terminal NRK99_19640 PF00483 Nucleotidyl transferase NRK99_19645 PF00534 Glycosyl transferases group 1 NRK99_19645 PF08323 Starch synthase catalytic domain NRK99_19680 PF03553 Na+/H+ antiporter family NRK99_19685 PF03466 LysR substrate binding domain NRK99_19685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_19690 PF13416 Bacterial extracellular solute-binding protein NRK99_19695 PF08402 TOBE domain NRK99_19695 PF00005 ABC transporter NRK99_19700 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_19705 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_19710 PF00171 Aldehyde dehydrogenase family NRK99_19735 PF14602 Hexapeptide repeat of succinyl-transferase NRK99_19735 PF12464 Maltose acetyltransferase NRK99_19740 PF00128 Alpha amylase, catalytic domain NRK99_19740 PF11941 Domain of unknown function (DUF3459) NRK99_19745 PF00367 phosphotransferase system, EIIB NRK99_19745 PF02378 Phosphotransferase system, EIIC NRK99_19750 PF00356 Bacterial regulatory proteins, lacI family NRK99_19765 PF00710 Asparaginase, N-terminal NRK99_19765 PF17763 Glutaminase/Asparaginase C-terminal domain NRK99_19780 PF02142 MGS-like domain NRK99_19790 PF00210 Ferritin-like domain NRK99_19805 PF08351 Domain of unknown function (DUF1726) NRK99_19805 PF17176 tRNA-binding domain NRK99_19805 PF05127 Helicase NRK99_19805 PF13718 GNAT acetyltransferase 2 NRK99_19810 PF00106 short chain dehydrogenase NRK99_19815 PF01584 CheW-like domain NRK99_19815 PF00072 Response regulator receiver domain NRK99_19820 PF07670 Nucleoside recognition NRK99_19855 PF02660 Glycerol-3-phosphate acyltransferase NRK99_19860 PF02152 Dihydroneopterin aldolase NRK99_19865 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRK99_19875 PF07690 Major Facilitator Superfamily NRK99_19880 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRK99_19880 PF07683 Cobalamin synthesis protein cobW C-terminal domain NRK99_19885 PF04030 D-arabinono-1,4-lactone oxidase NRK99_19885 PF01565 FAD binding domain NRK99_19890 PF01810 LysE type translocator NRK99_19895 PF03466 LysR substrate binding domain NRK99_19895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_19900 PF00563 EAL domain NRK99_19900 PF12792 CSS motif domain associated with EAL NRK99_19905 PF06434 Aconitate hydratase 2 N-terminus NRK99_19905 PF11791 Aconitate B N-terminal domain NRK99_19905 PF00330 Aconitase family (aconitate hydratase) NRK99_19910 PF01734 Patatin-like phospholipase NRK99_19915 PF00672 HAMP domain NRK99_19915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_19915 PF12729 Four helix bundle sensory module for signal transduction NRK99_19920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_19920 PF00672 HAMP domain NRK99_19920 PF12729 Four helix bundle sensory module for signal transduction NRK99_19930 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_19930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK99_19935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRK99_19935 PF00364 Biotin-requiring enzyme NRK99_19935 PF02817 e3 binding domain NRK99_19940 PF17831 Pyruvate dehydrogenase E1 component middle domain NRK99_19940 PF00456 Transketolase, thiamine diphosphate binding domain NRK99_19945 PF07729 FCD domain NRK99_19945 PF00392 Bacterial regulatory proteins, gntR family NRK99_19950 PF01510 N-acetylmuramoyl-L-alanine amidase NRK99_19960 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NRK99_19960 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NRK99_19965 PF07963 Prokaryotic N-terminal methylation motif NRK99_19970 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRK99_19970 PF00437 Type II/IV secretion system protein NRK99_19975 PF00482 Type II secretion system (T2SS), protein F NRK99_19980 PF06750 Bacterial Peptidase A24 N-terminal domain NRK99_19980 PF01478 Type IV leader peptidase family NRK99_19985 PF01121 Dephospho-CoA kinase NRK99_19990 PF07072 Cell division protein NRK99_19995 PF03884 DNA gyrase inhibitor YacG NRK99_20000 PF00293 NUDIX domain NRK99_20010 PF02810 SEC-C motif NRK99_20010 PF01043 SecA preprotein cross-linking domain NRK99_20010 PF07517 SecA DEAD-like domain NRK99_20010 PF07516 SecA Wing and Scaffold domain NRK99_20020 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NRK99_20025 PF12327 FtsZ family, C-terminal domain NRK99_20025 PF00091 Tubulin/FtsZ family, GTPase domain NRK99_20030 PF02491 SHS2 domain inserted in FTSA NRK99_20035 PF03799 Cell division protein FtsQ NRK99_20035 PF08478 POTRA domain, FtsQ-type NRK99_20040 PF08245 Mur ligase middle domain NRK99_20040 PF01225 Mur ligase family, catalytic domain NRK99_20040 PF02875 Mur ligase family, glutamate ligase domain NRK99_20045 PF03033 Glycosyltransferase family 28 N-terminal domain NRK99_20045 PF04101 Glycosyltransferase family 28 C-terminal domain NRK99_20050 PF01098 Cell cycle protein NRK99_20055 PF08245 Mur ligase middle domain NRK99_20055 PF02875 Mur ligase family, glutamate ligase domain NRK99_20060 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NRK99_20060 PF00953 Glycosyl transferase family 4 NRK99_20065 PF02875 Mur ligase family, glutamate ligase domain NRK99_20065 PF01225 Mur ligase family, catalytic domain NRK99_20065 PF08245 Mur ligase middle domain NRK99_20070 PF02875 Mur ligase family, glutamate ligase domain NRK99_20070 PF08245 Mur ligase middle domain NRK99_20070 PF01225 Mur ligase family, catalytic domain NRK99_20075 PF03717 Penicillin-binding Protein dimerisation domain NRK99_20075 PF00905 Penicillin binding protein transpeptidase domain NRK99_20080 PF04999 Cell division protein FtsL NRK99_20085 PF01795 MraW methylase family NRK99_20090 PF02381 MraZ protein, putative antitoxin-like NRK99_20100 PF01464 Transglycosylase SLT domain NRK99_20100 PF01476 LysM domain NRK99_20105 PF00691 OmpA family NRK99_20105 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRK99_20110 PF01618 MotA/TolQ/ExbB proton channel family NRK99_20115 PF04545 Sigma-70, region 4 NRK99_20115 PF04542 Sigma-70 region 2 NRK99_20135 PF02561 Flagellar protein FliS NRK99_20140 PF07195 Flagellar hook-associated protein 2 C-terminus NRK99_20140 PF02465 Flagellar hook-associated protein 2 N-terminus NRK99_20140 PF07196 Flagellin hook IN motif NRK99_20145 PF00700 Bacterial flagellin C-terminal helical region NRK99_20145 PF00669 Bacterial flagellin N-terminal helical region NRK99_20150 PF00700 Bacterial flagellin C-terminal helical region NRK99_20150 PF00669 Bacterial flagellin N-terminal helical region NRK99_20165 PF00669 Bacterial flagellin N-terminal helical region NRK99_20170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_20170 PF00460 Flagella basal body rod protein NRK99_20180 PF02119 Flagellar P-ring protein NRK99_20185 PF02107 Flagellar L-ring protein NRK99_20190 PF00460 Flagella basal body rod protein NRK99_20190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_20195 PF00460 Flagella basal body rod protein NRK99_20195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_20200 PF07559 Flagellar basal body protein FlaE NRK99_20200 PF00460 Flagella basal body rod protein NRK99_20200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_20205 PF03963 Flagellar hook capping protein - N-terminal region NRK99_20205 PF13860 FlgD Ig-like domain NRK99_20205 PF13861 FlgD Tudor-like domain NRK99_20210 PF00460 Flagella basal body rod protein NRK99_20210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRK99_20215 PF00460 Flagella basal body rod protein NRK99_20240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK99_20240 PF18269 T3SS EscN ATPase C-terminal domain NRK99_20250 PF01706 FliG C-terminal domain NRK99_20250 PF14841 FliG middle domain NRK99_20250 PF14842 FliG N-terminal domain NRK99_20255 PF01514 Secretory protein of YscJ/FliF family NRK99_20255 PF08345 Flagellar M-ring protein C-terminal NRK99_20260 PF02049 Flagellar hook-basal body complex protein FliE NRK99_20265 PF00072 Response regulator receiver domain NRK99_20265 PF02954 Bacterial regulatory protein, Fis family NRK99_20265 PF00158 Sigma-54 interaction domain NRK99_20270 PF00771 FHIPEP family NRK99_20275 PF01312 FlhB HrpN YscU SpaS Family NRK99_20280 PF01311 Bacterial export proteins, family 1 NRK99_20285 PF01313 Bacterial export proteins, family 3 NRK99_20290 PF00813 FliP family NRK99_20295 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRK99_20310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRK99_20315 PF04348 LppC putative lipoprotein NRK99_20320 PF02021 Uncharacterised protein family UPF0102 NRK99_20325 PF13580 SIS domain NRK99_20330 PF04972 BON domain NRK99_20335 PF04386 Stringent starvation protein B NRK99_20340 PF00043 Glutathione S-transferase, C-terminal domain NRK99_20340 PF02798 Glutathione S-transferase, N-terminal domain NRK99_20345 PF02167 Cytochrome C1 family NRK99_20350 PF00032 Cytochrome b(C-terminal)/b6/petD NRK99_20350 PF00033 Cytochrome b/b6/petB NRK99_20355 PF00355 Rieske [2Fe-2S] domain NRK99_20355 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NRK99_20360 PF00380 Ribosomal protein S9/S16 NRK99_20365 PF00572 Ribosomal protein L13 NRK99_20370 PF03969 AFG1-like ATPase NRK99_20380 PF13180 PDZ domain NRK99_20380 PF00595 PDZ domain NRK99_20385 PF13180 PDZ domain NRK99_20415 PF01979 Amidohydrolase family NRK99_20420 PF03841 L-seryl-tRNA selenium transferase NRK99_20425 PF07071 KDGP aldolase NRK99_20430 PF08279 HTH domain NRK99_20430 PF05043 Mga helix-turn-helix domain NRK99_20430 PF00874 PRD domain NRK99_20430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK99_20435 PF00381 PTS HPr component phosphorylation site NRK99_20440 PF03668 P-loop ATPase protein family NRK99_20445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRK99_20450 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRK99_20455 PF00309 Sigma-54 factor, Activator interacting domain (AID) NRK99_20455 PF04963 Sigma-54 factor, core binding domain NRK99_20455 PF04552 Sigma-54, DNA binding domain NRK99_20460 PF00005 ABC transporter NRK99_20460 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRK99_20465 PF03968 OstA-like protein NRK99_20470 PF06835 Lipopolysaccharide-assembly, LptC-related NRK99_20480 PF00571 CBS domain NRK99_20480 PF01380 SIS domain NRK99_20485 PF00005 ABC transporter NRK99_20490 PF02405 Permease MlaE NRK99_20495 PF02470 MlaD protein NRK99_20500 PF05494 MlaC protein NRK99_20510 PF01722 BolA-like protein NRK99_20515 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRK99_20520 PF01523 Putative modulator of DNA gyrase NRK99_20525 PF04751 Protein of unknown function (DUF615) NRK99_20535 PF04363 Protein of unknown function (DUF496) NRK99_20570 PF01381 Helix-turn-helix NRK99_20570 PF07883 Cupin domain NRK99_20575 PF03594 Benzoate membrane transport protein NRK99_20585 PF02219 Methylenetetrahydrofolate reductase NRK99_20600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_20600 PF00672 HAMP domain NRK99_20605 PF03922 OmpW family NRK99_20610 PF00990 Diguanylate cyclase, GGDEF domain NRK99_20615 PF00005 ABC transporter NRK99_20615 PF17755 UvrA DNA-binding domain NRK99_20615 PF17760 UvrA interaction domain NRK99_20620 PF00196 Bacterial regulatory proteins, luxR family NRK99_20625 PF00436 Single-strand binding protein family NRK99_20640 PF01545 Cation efflux family NRK99_20640 PF16916 Dimerisation domain of Zinc Transporter NRK99_20650 PF00313 'Cold-shock' DNA-binding domain NRK99_20655 PF00593 TonB dependent receptor NRK99_20655 PF07715 TonB-dependent Receptor Plug Domain NRK99_20660 PF00360 Phytochrome region NRK99_20660 PF00990 Diguanylate cyclase, GGDEF domain NRK99_20660 PF01590 GAF domain NRK99_20660 PF00563 EAL domain NRK99_20665 PF00512 His Kinase A (phospho-acceptor) domain NRK99_20665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_20665 PF00672 HAMP domain NRK99_20670 PF00072 Response regulator receiver domain NRK99_20670 PF00486 Transcriptional regulatory protein, C terminal NRK99_20695 PF00990 Diguanylate cyclase, GGDEF domain NRK99_20705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRK99_20715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_20715 PF03466 LysR substrate binding domain NRK99_20730 PF13538 UvrD-like helicase C-terminal domain NRK99_20735 PF13361 UvrD-like helicase C-terminal domain NRK99_20735 PF12705 PD-(D/E)XK nuclease superfamily NRK99_20735 PF00580 UvrD/REP helicase N-terminal domain NRK99_20740 PF17946 RecC C-terminal domain NRK99_20745 PF07681 DoxX NRK99_20750 PF17954 Quercetinase C-terminal cupin domain NRK99_20750 PF02678 Pirin NRK99_20760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_20760 PF03466 LysR substrate binding domain NRK99_20770 PF00392 Bacterial regulatory proteins, gntR family NRK99_20770 PF07702 UTRA domain NRK99_20785 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_20795 PF08402 TOBE domain NRK99_20795 PF00005 ABC transporter NRK99_20805 PF00990 Diguanylate cyclase, GGDEF domain NRK99_20825 PF00583 Acetyltransferase (GNAT) family NRK99_20850 PF01569 PAP2 superfamily NRK99_20855 PF01594 AI-2E family transporter NRK99_20870 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRK99_20875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_20875 PF03466 LysR substrate binding domain NRK99_20880 PF02954 Bacterial regulatory protein, Fis family NRK99_20880 PF00158 Sigma-54 interaction domain NRK99_20880 PF00989 PAS fold NRK99_20885 PF00465 Iron-containing alcohol dehydrogenase NRK99_20890 PF00381 PTS HPr component phosphorylation site NRK99_20890 PF00391 PEP-utilising enzyme, mobile domain NRK99_20890 PF05524 PEP-utilising enzyme, N-terminal NRK99_20890 PF03610 PTS system fructose IIA component NRK99_20895 PF02734 DAK2 domain NRK99_20900 PF02733 Dak1 domain NRK99_20905 PF00860 Permease family NRK99_20945 PF03143 Elongation factor Tu C-terminal domain NRK99_20945 PF00009 Elongation factor Tu GTP binding domain NRK99_20945 PF03144 Elongation factor Tu domain 2 NRK99_20950 PF03144 Elongation factor Tu domain 2 NRK99_20950 PF00009 Elongation factor Tu GTP binding domain NRK99_20950 PF03764 Elongation factor G, domain IV NRK99_20950 PF14492 Elongation Factor G, domain II NRK99_20950 PF00679 Elongation factor G C-terminus NRK99_20955 PF00177 Ribosomal protein S7p/S5e NRK99_20960 PF00164 Ribosomal protein S12/S23 NRK99_20965 PF04077 DsrH like protein NRK99_20970 PF02635 DsrE/DsrF-like family NRK99_20975 PF02635 DsrE/DsrF-like family NRK99_20980 PF01042 Endoribonuclease L-PSP NRK99_20985 PF08348 YheO-like PAS domain NRK99_20985 PF13309 HTH domain NRK99_20990 PF04998 RNA polymerase Rpb1, domain 5 NRK99_20990 PF04997 RNA polymerase Rpb1, domain 1 NRK99_20990 PF00623 RNA polymerase Rpb1, domain 2 NRK99_20990 PF04983 RNA polymerase Rpb1, domain 3 NRK99_20990 PF05000 RNA polymerase Rpb1, domain 4 NRK99_20995 PF04563 RNA polymerase beta subunit NRK99_20995 PF04561 RNA polymerase Rpb2, domain 2 NRK99_20995 PF10385 RNA polymerase beta subunit external 1 domain NRK99_20995 PF00562 RNA polymerase Rpb2, domain 6 NRK99_20995 PF04560 RNA polymerase Rpb2, domain 7 NRK99_20995 PF04565 RNA polymerase Rpb2, domain 3 NRK99_21000 PF16320 Ribosomal protein L7/L12 dimerisation domain NRK99_21000 PF00542 Ribosomal protein L7/L12 C-terminal domain NRK99_21005 PF00466 Ribosomal protein L10 NRK99_21010 PF00687 Ribosomal protein L1p/L10e family NRK99_21015 PF03946 Ribosomal protein L11, N-terminal domain NRK99_21015 PF00298 Ribosomal protein L11, RNA binding domain NRK99_21020 PF02357 Transcription termination factor nusG NRK99_21020 PF00467 KOW motif NRK99_21025 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NRK99_21035 PF00009 Elongation factor Tu GTP binding domain NRK99_21035 PF03143 Elongation factor Tu C-terminal domain NRK99_21035 PF03144 Elongation factor Tu domain 2 NRK99_21050 PF00485 Phosphoribulokinase / Uridine kinase family NRK99_21055 PF02237 Biotin protein ligase C terminal domain NRK99_21055 PF03099 Biotin/lipoate A/B protein ligase family NRK99_21055 PF08279 HTH domain NRK99_21060 PF01565 FAD binding domain NRK99_21060 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NRK99_21065 PF02254 TrkA-N domain NRK99_21065 PF02080 TrkA-C domain NRK99_21070 PF02386 Cation transport protein NRK99_21075 PF12833 Helix-turn-helix domain NRK99_21075 PF12852 Cupin NRK99_21090 PF01751 Toprim domain NRK99_21090 PF01131 DNA topoisomerase NRK99_21095 PF03264 NapC/NirT cytochrome c family, N-terminal region NRK99_21100 PF00384 Molybdopterin oxidoreductase NRK99_21100 PF18364 Molybdopterin oxidoreductase N-terminal domain NRK99_21100 PF01568 Molydopterin dinucleotide binding domain NRK99_21110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_21115 PF00486 Transcriptional regulatory protein, C terminal NRK99_21115 PF00072 Response regulator receiver domain NRK99_21130 PF01794 Ferric reductase like transmembrane component NRK99_21135 PF00174 Oxidoreductase molybdopterin binding domain NRK99_21140 PF06496 Protein of unknown function (DUF1097) NRK99_21145 PF00072 Response regulator receiver domain NRK99_21145 PF00158 Sigma-54 interaction domain NRK99_21155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_21155 PF00512 His Kinase A (phospho-acceptor) domain NRK99_21175 PF00571 CBS domain NRK99_21175 PF00478 IMP dehydrogenase / GMP reductase domain NRK99_21180 PF10063 Uncharacterized integral membrane protein (DUF2301) NRK99_21190 PF01037 Lrp/AsnC ligand binding domain NRK99_21195 PF03590 Aspartate-ammonia ligase NRK99_21205 PF00004 ATPase family associated with various cellular activities (AAA) NRK99_21205 PF07724 AAA domain (Cdc48 subfamily) NRK99_21205 PF17871 AAA lid domain NRK99_21205 PF02861 Clp amino terminal domain, pathogenicity island component NRK99_21205 PF10431 C-terminal, D2-small domain, of ClpB protein NRK99_21210 PF02578 Multi-copper polyphenol oxidoreductase laccase NRK99_21215 PF01479 S4 domain NRK99_21215 PF00849 RNA pseudouridylate synthase NRK99_21220 PF13525 Outer membrane lipoprotein NRK99_21225 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_21225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRK99_21230 PF00375 Sodium:dicarboxylate symporter family NRK99_21235 PF03313 Serine dehydratase alpha chain NRK99_21245 PF02233 NAD(P) transhydrogenase beta subunit NRK99_21250 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRK99_21250 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRK99_21250 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRK99_21255 PF00465 Iron-containing alcohol dehydrogenase NRK99_21260 PF12833 Helix-turn-helix domain NRK99_21260 PF06719 AraC-type transcriptional regulator N-terminus NRK99_21265 PF08212 Lipocalin-like domain NRK99_21270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_21270 PF00672 HAMP domain NRK99_21270 PF02743 Cache domain NRK99_21280 PF02666 Phosphatidylserine decarboxylase NRK99_21300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRK99_21300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRK99_21305 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NRK99_21305 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NRK99_21310 PF01316 Arginine repressor, DNA binding domain NRK99_21310 PF02863 Arginine repressor, C-terminal domain NRK99_21315 PF03606 C4-dicarboxylate anaerobic carrier NRK99_21320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRK99_21320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRK99_21325 PF00696 Amino acid kinase family NRK99_21350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_21350 PF00672 HAMP domain NRK99_21350 PF02743 Cache domain NRK99_21355 PF02653 Branched-chain amino acid transport system / permease component NRK99_21360 PF00005 ABC transporter NRK99_21365 PF13407 Periplasmic binding protein domain NRK99_21370 PF16353 Domain of unknown function(DUF4981) NRK99_21370 PF02929 Beta galactosidase small chain NRK99_21370 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRK99_21370 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRK99_21370 PF00703 Glycosyl hydrolases family 2 NRK99_21375 PF00356 Bacterial regulatory proteins, lacI family NRK99_21380 PF16363 GDP-mannose 4,6 dehydratase NRK99_21385 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NRK99_21385 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NRK99_21390 PF10509 Galactokinase galactose-binding signature NRK99_21390 PF08544 GHMP kinases C terminal NRK99_21390 PF00288 GHMP kinases N terminal domain NRK99_21395 PF01263 Aldose 1-epimerase NRK99_21400 PF00248 Aldo/keto reductase family NRK99_21405 PF02673 Bacitracin resistance protein BacA NRK99_21410 PF12973 ChrR Cupin-like domain NRK99_21415 PF04542 Sigma-70 region 2 NRK99_21415 PF04545 Sigma-70, region 4 NRK99_21425 PF03485 Arginyl tRNA synthetase N terminal domain NRK99_21425 PF05746 DALR anticodon binding domain NRK99_21425 PF00750 tRNA synthetases class I (R) NRK99_21435 PF00227 Proteasome subunit NRK99_21440 PF07724 AAA domain (Cdc48 subfamily) NRK99_21440 PF10431 C-terminal, D2-small domain, of ClpB protein NRK99_21440 PF00004 ATPase family associated with various cellular activities (AAA) NRK99_21445 PF07690 Major Facilitator Superfamily NRK99_21450 PF03466 LysR substrate binding domain NRK99_21450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRK99_21455 PF04324 BFD-like [2Fe-2S] binding domain NRK99_21455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRK99_21455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRK99_21455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRK99_21455 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRK99_21460 PF13806 Rieske-like [2Fe-2S] domain NRK99_21465 PF01226 Formate/nitrite transporter NRK99_21470 PF10414 Sirohaem synthase dimerisation region NRK99_21470 PF14824 Sirohaem biosynthesis protein central NRK99_21470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRK99_21475 PF01769 Divalent cation transporter NRK99_21475 PF03448 MgtE intracellular N domain NRK99_21475 PF00571 CBS domain NRK99_21480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRK99_21480 PF00672 HAMP domain NRK99_21485 PF03737 Aldolase/RraA NRK99_21490 PF02592 Putative vitamin uptake transporter NRK99_21500 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NRK99_21505 PF00034 Cytochrome c NRK99_21510 PF09382 RQC domain NRK99_21510 PF16124 RecQ zinc-binding NRK99_21510 PF00570 HRDC domain NRK99_21510 PF00271 Helicase conserved C-terminal domain NRK99_21510 PF00270 DEAD/DEAH box helicase NRK99_21515 PF03061 Thioesterase superfamily NRK99_21530 PF03475 3-alpha domain NRK99_21530 PF03473 MOSC domain NRK99_21535 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_21540 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_21545 PF00005 ABC transporter NRK99_21545 PF08402 TOBE domain NRK99_21550 PF13416 Bacterial extracellular solute-binding protein NRK99_21555 PF13416 Bacterial extracellular solute-binding protein NRK99_21560 PF00202 Aminotransferase class-III NRK99_21565 PF00120 Glutamine synthetase, catalytic domain NRK99_21570 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRK99_21585 PF05981 CreA protein NRK99_21590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRK99_21590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRK99_21595 PF00012 Hsp70 protein NRK99_21600 PF03724 META domain NRK99_21610 PF00128 Alpha amylase, catalytic domain NRK99_21610 PF02903 Alpha amylase, N-terminal ig-like domain NRK99_21615 PF02719 Polysaccharide biosynthesis protein NRK99_21620 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRK99_21630 PF13537 Glutamine amidotransferase domain NRK99_21630 PF00733 Asparagine synthase NRK99_21635 PF00534 Glycosyl transferases group 1 NRK99_21635 PF13439 Glycosyltransferase Family 4 NRK99_21650 PF03275 UDP-galactopyranose mutase NRK99_21655 PF00535 Glycosyl transferase family 2 NRK99_21670 PF13193 AMP-binding enzyme C-terminal domain NRK99_21670 PF00501 AMP-binding enzyme NRK99_21690 PF02348 Cytidylyltransferase NRK99_21700 PF03102 NeuB family NRK99_21700 PF08666 SAF domain NRK99_21720 PF09940 Domain of unknown function (DUF2172) NRK99_21720 PF16254 Domain of unknown function (DUF4910) NRK99_21720 PF16221 winged helix-turn-helix NRK99_21755 PF05958 tRNA (Uracil-5-)-methyltransferase NRK99_21760 PF00072 Response regulator receiver domain NRK99_21760 PF00486 Transcriptional regulatory protein, C terminal NRK99_21765 PF00512 His Kinase A (phospho-acceptor) domain NRK99_21765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_21765 PF00672 HAMP domain NRK99_21775 PF00390 Malic enzyme, N-terminal domain NRK99_21775 PF03949 Malic enzyme, NAD binding domain NRK99_21780 PF11066 Protein of unknown function (DUF2867) NRK99_21780 PF13460 NAD(P)H-binding NRK99_21785 PF01197 Ribosomal protein L31 NRK99_21790 PF00270 DEAD/DEAH box helicase NRK99_21790 PF00271 Helicase conserved C-terminal domain NRK99_21790 PF18074 Primosomal protein N C-terminal domain NRK99_21790 PF17764 3′ DNA-binding domain (3′BD) NRK99_21790 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NRK99_21800 PF00440 Bacterial regulatory proteins, tetR family NRK99_21810 PF01389 OmpA-like transmembrane domain NRK99_21810 PF00691 OmpA family NRK99_21815 PF00291 Pyridoxal-phosphate dependent enzyme NRK99_21815 PF00585 C-terminal regulatory domain of Threonine dehydratase NRK99_21820 PF00920 Dehydratase family NRK99_21825 PF01063 Amino-transferase class IV NRK99_21835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRK99_21835 PF00205 Thiamine pyrophosphate enzyme, central domain NRK99_21835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRK99_21840 PF13335 Magnesium chelatase, subunit ChlI C-terminal NRK99_21840 PF01078 Magnesium chelatase, subunit ChlI NRK99_21845 PF01553 Acyltransferase NRK99_21850 PF01553 Acyltransferase NRK99_21855 PF04463 Protein of unknown function (DUF523) NRK99_21865 PF00857 Isochorismatase family NRK99_21870 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NRK99_21870 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NRK99_21880 PF00005 ABC transporter NRK99_21885 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_21890 PF01323 DSBA-like thioredoxin domain NRK99_21895 PF01636 Phosphotransferase enzyme family NRK99_21900 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NRK99_21900 PF12801 4Fe-4S binding domain NRK99_21900 PF13746 4Fe-4S dicluster domain NRK99_21905 PF06288 Protein of unknown function (DUF1040) NRK99_21910 PF00563 EAL domain NRK99_21910 PF01590 GAF domain NRK99_21910 PF00990 Diguanylate cyclase, GGDEF domain NRK99_21910 PF00360 Phytochrome region NRK99_21915 PF09278 MerR, DNA binding NRK99_21915 PF00376 MerR family regulatory protein NRK99_21920 PF00403 Heavy-metal-associated domain NRK99_21925 PF00156 Phosphoribosyl transferase domain NRK99_21930 PF03725 3' exoribonuclease family, domain 2 NRK99_21930 PF01138 3' exoribonuclease family, domain 1 NRK99_21935 PF03755 YicC-like family, N-terminal region NRK99_21935 PF08340 Domain of unknown function (DUF1732) NRK99_21940 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRK99_21950 PF00550 Phosphopantetheine attachment site NRK99_21950 PF00668 Condensation domain NRK99_21950 PF13193 AMP-binding enzyme C-terminal domain NRK99_21950 PF00501 AMP-binding enzyme NRK99_21955 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NRK99_21960 PF13193 AMP-binding enzyme C-terminal domain NRK99_21960 PF00668 Condensation domain NRK99_21960 PF00550 Phosphopantetheine attachment site NRK99_21960 PF00975 Thioesterase domain NRK99_21960 PF00501 AMP-binding enzyme NRK99_21970 PF04954 Siderophore-interacting protein NRK99_21970 PF08021 Siderophore-interacting FAD-binding domain NRK99_21970 PF00005 ABC transporter NRK99_21970 PF00664 ABC transporter transmembrane region NRK99_21975 PF00005 ABC transporter NRK99_21980 PF01032 FecCD transport family NRK99_21985 PF01032 FecCD transport family NRK99_21990 PF00005 ABC transporter NRK99_21995 PF01497 Periplasmic binding protein NRK99_22000 PF00593 TonB dependent receptor NRK99_22000 PF07715 TonB-dependent Receptor Plug Domain NRK99_22020 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NRK99_22035 PF01370 NAD dependent epimerase/dehydratase family NRK99_22040 PF08360 QacR-like protein, C-terminal region NRK99_22040 PF00440 Bacterial regulatory proteins, tetR family NRK99_22045 PF00155 Aminotransferase class I and II NRK99_22050 PF00107 Zinc-binding dehydrogenase NRK99_22050 PF08240 Alcohol dehydrogenase GroES-like domain NRK99_22055 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRK99_22060 PF13188 PAS domain NRK99_22060 PF03707 Bacterial signalling protein N terminal repeat NRK99_22060 PF00990 Diguanylate cyclase, GGDEF domain NRK99_22060 PF00563 EAL domain NRK99_22065 PF00580 UvrD/REP helicase N-terminal domain NRK99_22065 PF13361 UvrD-like helicase C-terminal domain NRK99_22070 PF00266 Aminotransferase class-V NRK99_22075 PF02657 Fe-S metabolism associated domain NRK99_22080 PF00899 ThiF family NRK99_22110 PF12724 Flavodoxin domain NRK99_22115 PF02386 Cation transport protein NRK99_22120 PF09186 Domain of unknown function (DUF1949) NRK99_22120 PF01205 Uncharacterized protein family UPF0029 NRK99_22125 PF00557 Metallopeptidase family M24 NRK99_22130 PF13193 AMP-binding enzyme C-terminal domain NRK99_22130 PF00501 AMP-binding enzyme NRK99_22135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRK99_22135 PF00378 Enoyl-CoA hydratase/isomerase NRK99_22135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRK99_22140 PF00108 Thiolase, N-terminal domain NRK99_22140 PF02803 Thiolase, C-terminal domain NRK99_22145 PF00072 Response regulator receiver domain NRK99_22145 PF00486 Transcriptional regulatory protein, C terminal NRK99_22150 PF00672 HAMP domain NRK99_22150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_22150 PF00512 His Kinase A (phospho-acceptor) domain NRK99_22155 PF01547 Bacterial extracellular solute-binding protein NRK99_22165 PF01206 Sulfurtransferase TusA NRK99_22170 PF01042 Endoribonuclease L-PSP NRK99_22180 PF00691 OmpA family NRK99_22180 PF13488 Glycine zipper NRK99_22185 PF00857 Isochorismatase family NRK99_22190 PF03352 Methyladenine glycosylase NRK99_22195 PF02091 Glycyl-tRNA synthetase alpha subunit NRK99_22200 PF05746 DALR anticodon binding domain NRK99_22200 PF02092 Glycyl-tRNA synthetase beta subunit NRK99_22215 PF14306 PUA-like domain NRK99_22215 PF01747 ATP-sulfurylase NRK99_22235 PF03496 ADP-ribosyltransferase exoenzyme NRK99_22235 PF03545 Yersinia virulence determinant (YopE) NRK99_22240 PF05932 Tir chaperone protein (CesT) family NRK99_22250 PF03222 Tryptophan/tyrosine permease family NRK99_22255 PF12801 4Fe-4S binding domain NRK99_22260 PF00392 Bacterial regulatory proteins, gntR family NRK99_22260 PF07702 UTRA domain NRK99_22265 PF00367 phosphotransferase system, EIIB NRK99_22265 PF02378 Phosphotransferase system, EIIC NRK99_22270 PF02056 Family 4 glycosyl hydrolase NRK99_22270 PF11975 Family 4 glycosyl hydrolase C-terminal domain NRK99_22275 PF00356 Bacterial regulatory proteins, lacI family NRK99_22280 PF13458 Periplasmic binding protein NRK99_22285 PF02653 Branched-chain amino acid transport system / permease component NRK99_22290 PF11862 Domain of unknown function (DUF3382) NRK99_22290 PF02653 Branched-chain amino acid transport system / permease component NRK99_22295 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRK99_22295 PF00005 ABC transporter NRK99_22300 PF00005 ABC transporter NRK99_22315 PF00581 Rhodanese-like domain NRK99_22320 PF01694 Rhomboid family NRK99_22320 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NRK99_22325 PF12262 Bacterial virulence factor lipase N-terminal NRK99_22330 PF04380 Membrane fusogenic activity NRK99_22335 PF00175 Oxidoreductase NAD-binding domain NRK99_22340 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NRK99_22350 PF07497 Rho termination factor, RNA-binding domain NRK99_22350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK99_22350 PF07498 Rho termination factor, N-terminal domain NRK99_22355 PF00085 Thioredoxin NRK99_22360 PF00270 DEAD/DEAH box helicase NRK99_22360 PF00271 Helicase conserved C-terminal domain NRK99_22365 PF02541 Ppx/GppA phosphatase family NRK99_22380 PF04445 Putative SAM-dependent methyltransferase NRK99_22385 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRK99_22390 PF00990 Diguanylate cyclase, GGDEF domain NRK99_22390 PF03707 Bacterial signalling protein N terminal repeat NRK99_22390 PF00563 EAL domain NRK99_22395 PF01432 Peptidase family M3 NRK99_22400 PF00490 Delta-aminolevulinic acid dehydratase NRK99_22405 PF01026 TatD related DNase NRK99_22410 PF00902 Sec-independent protein translocase protein (TatC) NRK99_22415 PF02416 mttA/Hcf106 family NRK99_22420 PF02416 mttA/Hcf106 family NRK99_22425 PF03109 ABC1 family NRK99_22430 PF02036 SCP-2 sterol transfer family NRK99_22435 PF01209 ubiE/COQ5 methyltransferase family NRK99_22440 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NRK99_22445 PF07969 Amidohydrolase family NRK99_22490 PF03544 Gram-negative bacterial TonB protein C-terminal NRK99_22495 PF02472 Biopolymer transport protein ExbD/TolR NRK99_22500 PF01618 MotA/TolQ/ExbB proton channel family NRK99_22505 PF01618 MotA/TolQ/ExbB proton channel family NRK99_22515 PF03472 Autoinducer binding domain NRK99_22515 PF00196 Bacterial regulatory proteins, luxR family NRK99_22520 PF01380 SIS domain NRK99_22525 PF00455 DeoR C terminal sensor domain NRK99_22525 PF08220 DeoR-like helix-turn-helix domain NRK99_22530 PF00072 Response regulator receiver domain NRK99_22530 PF00486 Transcriptional regulatory protein, C terminal NRK99_22535 PF00672 HAMP domain NRK99_22535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRK99_22535 PF00512 His Kinase A (phospho-acceptor) domain NRK99_22540 PF00905 Penicillin binding protein transpeptidase domain NRK99_22545 PF06123 Inner membrane protein CreD NRK99_22550 PF12804 MobA-like NTP transferase domain NRK99_22550 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_22550 PF14602 Hexapeptide repeat of succinyl-transferase NRK99_22555 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NRK99_22555 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NRK99_22560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK99_22560 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRK99_22565 PF00231 ATP synthase NRK99_22570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRK99_22570 PF00306 ATP synthase alpha/beta chain, C terminal domain NRK99_22570 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRK99_22575 PF00213 ATP synthase delta (OSCP) subunit NRK99_22580 PF00430 ATP synthase B/B' CF(0) NRK99_22585 PF00137 ATP synthase subunit C NRK99_22590 PF00119 ATP synthase A chain NRK99_22600 PF02195 ParB-like nuclease domain NRK99_22600 PF17762 HTH domain found in ParB protein NRK99_22605 PF13614 AAA domain NRK99_22610 PF02527 rRNA small subunit methyltransferase G NRK99_22615 PF01134 Glucose inhibited division protein A NRK99_22615 PF13932 GidA associated domain NRK99_22620 PF00258 Flavodoxin NRK99_22625 PF07715 TonB-dependent Receptor Plug Domain NRK99_22625 PF00593 TonB dependent receptor NRK99_22630 PF00005 ABC transporter NRK99_22635 PF00005 ABC transporter NRK99_22645 PF01032 FecCD transport family NRK99_22650 PF13657 HipA N-terminal domain NRK99_22650 PF07804 HipA-like C-terminal domain NRK99_22665 PF13610 DDE domain NRK99_22680 PF00809 Pterin binding enzyme NRK99_22685 PF00893 Small Multidrug Resistance protein NRK99_22695 PF00132 Bacterial transferase hexapeptide (six repeats) NRK99_22705 PF13610 DDE domain NRK99_22710 PF01420 Type I restriction modification DNA specificity domain NRK99_22750 PF02899 Phage integrase, N-terminal SAM-like domain NRK99_22750 PF00589 Phage integrase family NRK99_22755 PF01926 50S ribosome-binding GTPase NRK99_22755 PF12631 MnmE helical domain NRK99_22755 PF10396 GTP-binding protein TrmE N-terminus NRK99_22760 PF02096 60Kd inner membrane protein NRK99_22760 PF14849 YidC periplasmic domain NRK99_22765 PF01809 Putative membrane protein insertion efficiency factor NRK99_22770 PF00825 Ribonuclease P NRK99_22775 PF00468 Ribosomal protein L34 NRK99_22780 PF00005 ABC transporter NRK99_22785 PF00528 Binding-protein-dependent transport system inner membrane component NRK99_22790 PF00497 Bacterial extracellular solute-binding proteins, family 3