locus-tag class description NRL00_00005 PF00308 Bacterial dnaA protein NRL00_00005 PF08299 Bacterial dnaA protein helix-turn-helix NRL00_00005 PF11638 DnaA N-terminal domain NRL00_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NRL00_00010 PF02767 DNA polymerase III beta subunit, central domain NRL00_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NRL00_00015 PF02463 RecF/RecN/SMC N terminal domain NRL00_00020 PF00204 DNA gyrase B NRL00_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NRL00_00020 PF18053 DNA gyrase B subunit insert domain NRL00_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_00020 PF01751 Toprim domain NRL00_00030 PF08279 HTH domain NRL00_00030 PF13280 WYL domain NRL00_00035 PF00011 Hsp20/alpha crystallin family NRL00_00040 PF00011 Hsp20/alpha crystallin family NRL00_00045 PF00155 Aminotransferase class I and II NRL00_00060 PF07690 Major Facilitator Superfamily NRL00_00065 PF00072 Response regulator receiver domain NRL00_00065 PF00486 Transcriptional regulatory protein, C terminal NRL00_00070 PF13493 Domain of unknown function (DUF4118) NRL00_00070 PF13492 GAF domain NRL00_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_00070 PF00512 His Kinase A (phospho-acceptor) domain NRL00_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain NRL00_00075 PF02669 K+-transporting ATPase, c chain NRL00_00085 PF03814 Potassium-transporting ATPase A subunit NRL00_00100 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_00100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL00_00105 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_00105 PF00512 His Kinase A (phospho-acceptor) domain NRL00_00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_00110 PF00873 AcrB/AcrD/AcrF family NRL00_00115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_00120 PF00440 Bacterial regulatory proteins, tetR family NRL00_00155 PF07690 Major Facilitator Superfamily NRL00_00165 PF00672 HAMP domain NRL00_00165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_00165 PF00512 His Kinase A (phospho-acceptor) domain NRL00_00170 PF02954 Bacterial regulatory protein, Fis family NRL00_00170 PF00072 Response regulator receiver domain NRL00_00170 PF14532 Sigma-54 interaction domain NRL00_00180 PF12146 Serine aminopeptidase, S33 NRL00_00185 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_00190 PF00588 SpoU rRNA Methylase family NRL00_00190 PF12105 SpoU, rRNA methylase, C-terminal NRL00_00195 PF13291 ACT domain NRL00_00195 PF04607 Region found in RelA / SpoT proteins NRL00_00195 PF02824 TGS domain NRL00_00200 PF01192 RNA polymerase Rpb6 NRL00_00205 PF00625 Guanylate kinase NRL00_00210 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL00_00225 PF00892 EamA-like transporter family NRL00_00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_00245 PF03466 LysR substrate binding domain NRL00_00250 PF00579 tRNA synthetases class I (W and Y) NRL00_00255 PF00582 Universal stress protein family NRL00_00260 PF07055 Enoyl reductase FAD binding domain NRL00_00260 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRL00_00260 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRL00_00265 PF00990 Diguanylate cyclase, GGDEF domain NRL00_00270 PF00210 Ferritin-like domain NRL00_00280 PF07690 Major Facilitator Superfamily NRL00_00285 PF01810 LysE type translocator NRL00_00290 PF06580 Histidine kinase NRL00_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_00290 PF07694 5TMR of 5TMR-LYT NRL00_00295 PF00072 Response regulator receiver domain NRL00_00295 PF04397 LytTr DNA-binding domain NRL00_00300 PF07690 Major Facilitator Superfamily NRL00_00305 PF02222 ATP-grasp domain NRL00_00305 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NRL00_00310 PF00731 AIR carboxylase NRL00_00325 PF03466 LysR substrate binding domain NRL00_00325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_00330 PF07715 TonB-dependent Receptor Plug Domain NRL00_00330 PF00593 TonB dependent receptor NRL00_00335 PF01177 Asp/Glu/Hydantoin racemase NRL00_00365 PF13607 Succinyl-CoA ligase like flavodoxin domain NRL00_00365 PF00583 Acetyltransferase (GNAT) family NRL00_00365 PF13380 CoA binding domain NRL00_00380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_00380 PF03466 LysR substrate binding domain NRL00_00385 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NRL00_00385 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NRL00_00390 PF00342 Phosphoglucose isomerase NRL00_00400 PF05552 Conserved TM helix NRL00_00400 PF00924 Mechanosensitive ion channel NRL00_00405 PF00440 Bacterial regulatory proteins, tetR family NRL00_00410 PF00692 dUTPase NRL00_00415 PF04127 DNA / pantothenate metabolism flavoprotein NRL00_00415 PF02441 Flavoprotein NRL00_00420 PF04002 RadC-like JAB domain NRL00_00425 PF00830 Ribosomal L28 family NRL00_00430 PF00471 Ribosomal protein L33 NRL00_00440 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NRL00_00440 PF06827 Zinc finger found in FPG and IleRS NRL00_00440 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NRL00_00445 PF04393 Protein of unknown function (DUF535) NRL00_00450 PF01467 Cytidylyltransferase-like NRL00_00455 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL00_00460 PF00535 Glycosyl transferase family 2 NRL00_00465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRL00_00470 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NRL00_00475 PF03611 PTS system sugar-specific permease component NRL00_00485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL00_00490 PF00356 Bacterial regulatory proteins, lacI family NRL00_00490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL00_00495 PF00107 Zinc-binding dehydrogenase NRL00_00495 PF08240 Alcohol dehydrogenase GroES-like domain NRL00_00515 PF03748 Flagellar basal body-associated protein FliL NRL00_00520 PF04345 Chorismate lyase NRL00_00525 PF01040 UbiA prenyltransferase family NRL00_00530 PF01553 Acyltransferase NRL00_00535 PF00717 Peptidase S24-like NRL00_00535 PF01726 LexA DNA binding domain NRL00_00545 PF02630 SCO1/SenC NRL00_00550 PF01554 MatE NRL00_00555 PF00588 SpoU rRNA Methylase family NRL00_00560 PF16527 Two-component sensor protein CpxA, periplasmic domain NRL00_00560 PF00672 HAMP domain NRL00_00560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_00560 PF00512 His Kinase A (phospho-acceptor) domain NRL00_00565 PF00072 Response regulator receiver domain NRL00_00565 PF00486 Transcriptional regulatory protein, C terminal NRL00_00570 PF16916 Dimerisation domain of Zinc Transporter NRL00_00570 PF01545 Cation efflux family NRL00_00575 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_00575 PF06426 Serine acetyltransferase, N-terminal NRL00_00585 PF06005 Cell division protein ZapB NRL00_00595 PF01612 3'-5' exonuclease NRL00_00595 PF00476 DNA polymerase family A NRL00_00595 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRL00_00595 PF01367 5'-3' exonuclease, C-terminal SAM fold NRL00_00600 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_00635 PF00356 Bacterial regulatory proteins, lacI family NRL00_00640 PF16353 Domain of unknown function(DUF4981) NRL00_00640 PF00703 Glycosyl hydrolases family 2 NRL00_00640 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRL00_00640 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRL00_00640 PF02929 Beta galactosidase small chain NRL00_00645 PF04074 YhcH/YjgK/YiaL NRL00_00650 PF13520 Amino acid permease NRL00_00655 PF01588 Putative tRNA binding domain NRL00_00660 PF13520 Amino acid permease NRL00_00665 PF13593 SBF-like CPA transporter family (DUF4137) NRL00_00670 PF03781 Sulfatase-modifying factor enzyme 1 NRL00_00670 PF12867 DinB superfamily NRL00_00680 PF00756 Putative esterase NRL00_00685 PF08240 Alcohol dehydrogenase GroES-like domain NRL00_00685 PF00107 Zinc-binding dehydrogenase NRL00_00690 PF03466 LysR substrate binding domain NRL00_00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_00695 PF02653 Branched-chain amino acid transport system / permease component NRL00_00700 PF02653 Branched-chain amino acid transport system / permease component NRL00_00705 PF00005 ABC transporter NRL00_00710 PF02608 ABC transporter substrate-binding protein PnrA-like NRL00_00715 PF13361 UvrD-like helicase C-terminal domain NRL00_00715 PF00580 UvrD/REP helicase N-terminal domain NRL00_00750 PF03466 LysR substrate binding domain NRL00_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_00760 PF14001 YdfZ protein NRL00_00795 PF06206 CpeT/CpcT family (DUF1001) NRL00_00805 PF01810 LysE type translocator NRL00_00815 PF04143 Sulphur transport NRL00_00820 PF00690 Cation transporter/ATPase, N-terminus NRL00_00820 PF00689 Cation transporting ATPase, C-terminus NRL00_00825 PF01810 LysE type translocator NRL00_00830 PF12833 Helix-turn-helix domain NRL00_00835 PF00892 EamA-like transporter family NRL00_00845 PF00171 Aldehyde dehydrogenase family NRL00_00850 PF07883 Cupin domain NRL00_00850 PF01381 Helix-turn-helix NRL00_00855 PF00202 Aminotransferase class-III NRL00_00860 PF00171 Aldehyde dehydrogenase family NRL00_00865 PF00958 GMP synthase C terminal domain NRL00_00865 PF00117 Glutamine amidotransferase class-I NRL00_00865 PF02540 NAD synthase NRL00_00870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRL00_00870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRL00_00875 PF00294 pfkB family carbohydrate kinase NRL00_00880 PF02082 Transcriptional regulator NRL00_00895 PF02646 RmuC family NRL00_00900 PF02386 Cation transport protein NRL00_00905 PF02254 TrkA-N domain NRL00_00905 PF02080 TrkA-C domain NRL00_00910 PF01029 NusB family NRL00_00910 PF01189 16S rRNA methyltransferase RsmB/F NRL00_00915 PF00551 Formyl transferase NRL00_00915 PF02911 Formyl transferase, C-terminal domain NRL00_00920 PF01327 Polypeptide deformylase NRL00_00930 PF17782 DprA winged helix domain NRL00_00930 PF02481 DNA recombination-mediator protein A NRL00_00935 PF04361 Protein of unknown function (DUF494) NRL00_00940 PF01396 Topoisomerase DNA binding C4 zinc finger NRL00_00945 PF00731 AIR carboxylase NRL00_00950 PF01300 Telomere recombination NRL00_00955 PF01218 Coproporphyrinogen III oxidase NRL00_00960 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NRL00_00960 PF01488 Shikimate / quinate 5-dehydrogenase NRL00_00960 PF08501 Shikimate dehydrogenase substrate binding domain NRL00_00965 PF07369 Protein of unknown function (DUF1488) NRL00_00970 PF01926 50S ribosome-binding GTPase NRL00_00975 PF00034 Cytochrome c NRL00_00980 PF04220 Der GTPase activator (YihI) NRL00_00985 PF10675 Protein of unknown function (DUF2489) NRL00_00990 PF06969 HemN C-terminal domain NRL00_00990 PF04055 Radical SAM superfamily NRL00_00995 PF00962 Adenosine/AMP deaminase NRL00_01000 PF02954 Bacterial regulatory protein, Fis family NRL00_01000 PF00072 Response regulator receiver domain NRL00_01000 PF00158 Sigma-54 interaction domain NRL00_01005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_01005 PF00512 His Kinase A (phospho-acceptor) domain NRL00_01005 PF00989 PAS fold NRL00_01015 PF03951 Glutamine synthetase, beta-Grasp domain NRL00_01015 PF00120 Glutamine synthetase, catalytic domain NRL00_01020 PF03144 Elongation factor Tu domain 2 NRL00_01020 PF00009 Elongation factor Tu GTP binding domain NRL00_01020 PF00679 Elongation factor G C-terminus NRL00_01025 PF03631 Virulence factor BrkB NRL00_01030 PF02580 D-Tyr-tRNA(Tyr) deacylase NRL00_01040 PF00583 Acetyltransferase (GNAT) family NRL00_01040 PF09500 Putative thioesterase (yiiD_Cterm) NRL00_01050 PF00270 DEAD/DEAH box helicase NRL00_01050 PF00271 Helicase conserved C-terminal domain NRL00_01050 PF17191 RecG wedge domain NRL00_01055 PF13091 PLD-like domain NRL00_01060 PF02447 GntP family permease NRL00_01065 PF01202 Shikimate kinase NRL00_01070 PF00920 Dehydratase family NRL00_01075 PF01081 KDPG and KHG aldolase NRL00_01080 PF00356 Bacterial regulatory proteins, lacI family NRL00_01080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL00_01090 PF01551 Peptidase family M23 NRL00_01095 PF01676 Metalloenzyme superfamily NRL00_01095 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NRL00_01100 PF00581 Rhodanese-like domain NRL00_01105 PF02556 Preprotein translocase subunit SecB NRL00_01110 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NRL00_01110 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NRL00_01115 PF01521 Iron-sulphur cluster biosynthesis NRL00_01115 PF01106 NifU-like domain NRL00_01120 PF00156 Phosphoribosyl transferase domain NRL00_01125 PF00561 alpha/beta hydrolase fold NRL00_01145 PF00575 S1 RNA binding domain NRL00_01145 PF17674 HHH domain NRL00_01145 PF09371 Tex-like protein N-terminal domain NRL00_01145 PF16921 Tex protein YqgF-like domain NRL00_01150 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL00_01150 PF03449 Transcription elongation factor, N-terminal NRL00_01155 PF00072 Response regulator receiver domain NRL00_01155 PF00486 Transcriptional regulatory protein, C terminal NRL00_01160 PF00672 HAMP domain NRL00_01160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_01160 PF00512 His Kinase A (phospho-acceptor) domain NRL00_01170 PF00338 Ribosomal protein S10p/S20e NRL00_01175 PF00297 Ribosomal protein L3 NRL00_01180 PF00573 Ribosomal protein L4/L1 family NRL00_01185 PF00276 Ribosomal protein L23 NRL00_01190 PF00181 Ribosomal Proteins L2, RNA binding domain NRL00_01190 PF03947 Ribosomal Proteins L2, C-terminal domain NRL00_01195 PF00203 Ribosomal protein S19 NRL00_01200 PF00237 Ribosomal protein L22p/L17e NRL00_01205 PF07650 KH domain NRL00_01205 PF00189 Ribosomal protein S3, C-terminal domain NRL00_01210 PF00252 Ribosomal protein L16p/L10e NRL00_01215 PF00831 Ribosomal L29 protein NRL00_01220 PF00366 Ribosomal protein S17 NRL00_01225 PF00238 Ribosomal protein L14p/L23e NRL00_01230 PF00467 KOW motif NRL00_01230 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NRL00_01235 PF00673 ribosomal L5P family C-terminus NRL00_01235 PF00281 Ribosomal protein L5 NRL00_01240 PF00253 Ribosomal protein S14p/S29e NRL00_01245 PF00410 Ribosomal protein S8 NRL00_01250 PF00347 Ribosomal protein L6 NRL00_01255 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NRL00_01260 PF00333 Ribosomal protein S5, N-terminal domain NRL00_01260 PF03719 Ribosomal protein S5, C-terminal domain NRL00_01265 PF00327 Ribosomal protein L30p/L7e NRL00_01270 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NRL00_01275 PF00344 SecY translocase NRL00_01280 PF00444 Ribosomal protein L36 NRL00_01285 PF00416 Ribosomal protein S13/S18 NRL00_01290 PF00411 Ribosomal protein S11 NRL00_01295 PF00163 Ribosomal protein S4/S9 N-terminal domain NRL00_01295 PF01479 S4 domain NRL00_01300 PF01000 RNA polymerase Rpb3/RpoA insert domain NRL00_01300 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NRL00_01300 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NRL00_01305 PF01196 Ribosomal protein L17 NRL00_01345 PF00999 Sodium/hydrogen exchanger family NRL00_01345 PF02254 TrkA-N domain NRL00_01350 PF02525 Flavodoxin-like fold NRL00_01355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_01355 PF03466 LysR substrate binding domain NRL00_01360 PF00106 short chain dehydrogenase NRL00_01375 PF00326 Prolyl oligopeptidase family NRL00_01375 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL00_01380 PF16868 NMT1-like family NRL00_01395 PF07947 YhhN family NRL00_01400 PF07690 Major Facilitator Superfamily NRL00_01405 PF13533 Biotin-lipoyl like NRL00_01410 PF03466 LysR substrate binding domain NRL00_01410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_01420 PF00375 Sodium:dicarboxylate symporter family NRL00_01425 PF10678 Protein of unknown function (DUF2492) NRL00_01430 PF01914 MarC family integral membrane protein NRL00_01435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_01435 PF03466 LysR substrate binding domain NRL00_01440 PF02416 mttA/Hcf106 family NRL00_01450 PF01464 Transglycosylase SLT domain NRL00_01460 PF13091 PLD-like domain NRL00_01470 PF00440 Bacterial regulatory proteins, tetR family NRL00_01490 PF02881 SRP54-type protein, helical bundle domain NRL00_01490 PF00448 SRP54-type protein, GTPase domain NRL00_01495 PF00005 ABC transporter NRL00_01500 PF18075 FtsX extracellular domain NRL00_01505 PF04542 Sigma-70 region 2 NRL00_01505 PF00140 Sigma-70 factor, region 1.2 NRL00_01505 PF04545 Sigma-70, region 4 NRL00_01510 PF00484 Carbonic anhydrase NRL00_01515 PF07702 UTRA domain NRL00_01515 PF00392 Bacterial regulatory proteins, gntR family NRL00_01520 PF01979 Amidohydrolase family NRL00_01525 PF00491 Arginase family NRL00_01530 PF17391 Urocanase N-terminal domain NRL00_01530 PF01175 Urocanase Rossmann-like domain NRL00_01530 PF17392 Urocanase C-terminal domain NRL00_01535 PF00221 Aromatic amino acid lyase NRL00_01540 PF01699 Sodium/calcium exchanger protein NRL00_01545 PF00563 EAL domain NRL00_01545 PF12792 CSS motif domain associated with EAL NRL00_01550 PF00990 Diguanylate cyclase, GGDEF domain NRL00_01550 PF00563 EAL domain NRL00_01550 PF17157 Gammaproteobacterial periplasmic sensor domain NRL00_01580 PF00263 Bacterial type II and III secretion system protein NRL00_01580 PF03958 Bacterial type II/III secretion system short domain NRL00_01595 PF00437 Type II/IV secretion system protein NRL00_01595 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRL00_01600 PF00482 Type II secretion system (T2SS), protein F NRL00_01610 PF07963 Prokaryotic N-terminal methylation motif NRL00_01620 PF00114 Pilin (bacterial filament) NRL00_01620 PF07963 Prokaryotic N-terminal methylation motif NRL00_01650 PF04085 rod shape-determining protein MreC NRL00_01655 PF04093 rod shape-determining protein MreD NRL00_01660 PF02545 Maf-like protein NRL00_01665 PF00575 S1 RNA binding domain NRL00_01665 PF10150 Ribonuclease E/G family NRL00_01670 PF13502 AsmA-like C-terminal region NRL00_01670 PF13116 Protein of unknown function NRL00_01685 PF00795 Carbon-nitrogen hydrolase NRL00_01690 PF01523 Putative modulator of DNA gyrase NRL00_01700 PF01914 MarC family integral membrane protein NRL00_01705 PF07690 Major Facilitator Superfamily NRL00_01715 PF00072 Response regulator receiver domain NRL00_01720 PF00072 Response regulator receiver domain NRL00_01720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL00_01720 PF01627 Hpt domain NRL00_01720 PF00512 His Kinase A (phospho-acceptor) domain NRL00_01720 PF00672 HAMP domain NRL00_01720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_01725 PF13581 Histidine kinase-like ATPase domain NRL00_01730 PF08678 Rsbr N terminal NRL00_01730 PF01740 STAS domain NRL00_01735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_01735 PF08447 PAS fold NRL00_01735 PF13426 PAS domain NRL00_01750 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) NRL00_01755 PF04228 Putative neutral zinc metallopeptidase NRL00_01765 PF08668 HDOD domain NRL00_01780 PF00999 Sodium/hydrogen exchanger family NRL00_01785 PF02574 Homocysteine S-methyltransferase NRL00_01785 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRL00_01785 PF02607 B12 binding domain NRL00_01785 PF02310 B12 binding domain NRL00_01785 PF00809 Pterin binding enzyme NRL00_01790 PF08443 RimK-like ATP-grasp domain NRL00_01790 PF18030 RimK PreATP-grasp domain NRL00_01795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_01800 PF00072 Response regulator receiver domain NRL00_01800 PF00486 Transcriptional regulatory protein, C terminal NRL00_01815 PF01117 Aerolysin toxin NRL00_01815 PF03440 Aerolysin/Pertussis toxin (APT) domain NRL00_01820 PF05935 Arylsulfotransferase (ASST) NRL00_01820 PF17425 Arylsulfotransferase Ig-like domain NRL00_01825 PF13667 ThiC-associated domain NRL00_01825 PF01964 Radical SAM ThiC family NRL00_01830 PF02581 Thiamine monophosphate synthase NRL00_01835 PF00899 ThiF family NRL00_01845 PF05690 Thiazole biosynthesis protein ThiG NRL00_01850 PF06968 Biotin and Thiamin Synthesis associated domain NRL00_01850 PF04055 Radical SAM superfamily NRL00_01870 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_01875 PF13036 Peptidoglycan-synthase activator LpoB NRL00_01895 PF00990 Diguanylate cyclase, GGDEF domain NRL00_01905 PF06055 Exopolysaccharide synthesis, ExoD NRL00_01920 PF08803 Putative mono-oxygenase ydhR NRL00_01925 PF01638 HxlR-like helix-turn-helix NRL00_01955 PF07715 TonB-dependent Receptor Plug Domain NRL00_01955 PF00593 TonB dependent receptor NRL00_01970 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NRL00_01975 PF03692 Putative zinc- or iron-chelating domain NRL00_01985 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NRL00_01990 PF02602 Uroporphyrinogen-III synthase HemD NRL00_01995 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NRL00_01995 PF03900 Porphobilinogen deaminase, C-terminal domain NRL00_02000 PF12633 Adenylate cyclase NT domain NRL00_02000 PF01295 Adenylate cyclase, class-I NRL00_02005 PF02230 Phospholipase/Carboxylesterase NRL00_02010 PF01491 Frataxin-like domain NRL00_02020 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL00_02020 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRL00_02025 PF01678 Diaminopimelate epimerase NRL00_02035 PF00589 Phage integrase family NRL00_02035 PF02899 Phage integrase, N-terminal SAM-like domain NRL00_02040 PF13419 Haloacid dehalogenase-like hydrolase NRL00_02050 PF00027 Cyclic nucleotide-binding domain NRL00_02050 PF13545 Crp-like helix-turn-helix domain NRL00_02060 PF07722 Peptidase C26 NRL00_02080 PF00005 ABC transporter NRL00_02090 PF02464 Competence-damaged protein NRL00_02090 PF00994 Probable molybdopterin binding domain NRL00_02095 PF01966 HD domain NRL00_02095 PF00013 KH domain NRL00_02095 PF12072 Domain of unknown function (DUF3552) NRL00_02100 PF04204 Homoserine O-succinyltransferase NRL00_02110 PF01037 Lrp/AsnC ligand binding domain NRL00_02115 PF00884 Sulfatase NRL00_02130 PF02903 Alpha amylase, N-terminal ig-like domain NRL00_02130 PF16657 Maltogenic Amylase, C-terminal domain NRL00_02130 PF00128 Alpha amylase, catalytic domain NRL00_02135 PF02308 MgtC family NRL00_02155 PF00106 short chain dehydrogenase NRL00_02160 PF03577 Peptidase family C69 NRL00_02170 PF00465 Iron-containing alcohol dehydrogenase NRL00_02180 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL00_02190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_02190 PF12793 Sugar transport-related sRNA regulator N-term NRL00_02205 PF03280 Proteobacterial lipase chaperone protein NRL00_02210 PF00561 alpha/beta hydrolase fold NRL00_02220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRL00_02220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRL00_02225 PF02698 DUF218 domain NRL00_02230 PF01752 Collagenase NRL00_02230 PF08453 Peptidase family M9 N-terminal NRL00_02240 PF00419 Fimbrial protein NRL00_02250 PF13953 PapC C-terminal domain NRL00_02250 PF13954 PapC N-terminal domain NRL00_02250 PF00577 Outer membrane usher protein NRL00_02255 PF02753 Pili assembly chaperone PapD, C-terminal domain NRL00_02255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NRL00_02265 PF00419 Fimbrial protein NRL00_02270 PF00072 Response regulator receiver domain NRL00_02270 PF00486 Transcriptional regulatory protein, C terminal NRL00_02275 PF00501 AMP-binding enzyme NRL00_02280 PF13378 Enolase C-terminal domain-like NRL00_02285 PF00378 Enoyl-CoA hydratase/isomerase NRL00_02290 PF12697 Alpha/beta hydrolase family NRL00_02295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL00_02295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL00_02295 PF16582 Middle domain of thiamine pyrophosphate NRL00_02300 PF00425 chorismate binding enzyme NRL00_02305 PF01040 UbiA prenyltransferase family NRL00_02335 PF00271 Helicase conserved C-terminal domain NRL00_02335 PF03880 DbpA RNA binding domain NRL00_02335 PF00270 DEAD/DEAH box helicase NRL00_02340 PF07670 Nucleoside recognition NRL00_02340 PF07662 Na+ dependent nucleoside transporter C-terminus NRL00_02340 PF01773 Na+ dependent nucleoside transporter N-terminus NRL00_02345 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRL00_02360 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NRL00_02365 PF01544 CorA-like Mg2+ transporter protein NRL00_02385 PF03471 Transporter associated domain NRL00_02385 PF00999 Sodium/hydrogen exchanger family NRL00_02385 PF02080 TrkA-C domain NRL00_02390 PF05068 Mannitol repressor NRL00_02395 PF08125 Mannitol dehydrogenase C-terminal domain NRL00_02395 PF01232 Mannitol dehydrogenase Rossmann domain NRL00_02400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL00_02400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL00_02400 PF02378 Phosphotransferase system, EIIC NRL00_02410 PF00440 Bacterial regulatory proteins, tetR family NRL00_02415 PF17876 Cold shock domain NRL00_02415 PF08206 Ribonuclease B OB domain NRL00_02415 PF00773 RNB domain NRL00_02420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_02420 PF03466 LysR substrate binding domain NRL00_02425 PF00765 Autoinducer synthase NRL00_02430 PF03472 Autoinducer binding domain NRL00_02430 PF00196 Bacterial regulatory proteins, luxR family NRL00_02435 PF01810 LysE type translocator NRL00_02440 PF02872 5'-nucleotidase, C-terminal domain NRL00_02440 PF00149 Calcineurin-like phosphoesterase NRL00_02445 PF05433 Glycine zipper 2TM domain NRL00_02450 PF00583 Acetyltransferase (GNAT) family NRL00_02455 PF11756 Nitrous oxide-stimulated promoter NRL00_02460 PF01321 Creatinase/Prolidase N-terminal domain NRL00_02460 PF00557 Metallopeptidase family M24 NRL00_02465 PF00392 Bacterial regulatory proteins, gntR family NRL00_02470 PF01293 Phosphoenolpyruvate carboxykinase NRL00_02475 PF01430 Hsp33 protein NRL00_02480 PF01479 S4 domain NRL00_02485 PF11356 Type II secretion system protein C NRL00_02490 PF00263 Bacterial type II and III secretion system protein NRL00_02490 PF03958 Bacterial type II/III secretion system short domain NRL00_02495 PF00437 Type II/IV secretion system protein NRL00_02500 PF00482 Type II secretion system (T2SS), protein F NRL00_02505 PF07963 Prokaryotic N-terminal methylation motif NRL00_02505 PF08334 Type II secretion system (T2SS), protein G NRL00_02510 PF12019 Type II transport protein GspH NRL00_02510 PF07963 Prokaryotic N-terminal methylation motif NRL00_02515 PF07963 Prokaryotic N-terminal methylation motif NRL00_02515 PF02501 Type II secretion system (T2SS), protein I NRL00_02520 PF07963 Prokaryotic N-terminal methylation motif NRL00_02520 PF11612 Type II secretion system (T2SS), protein J NRL00_02535 PF03934 Type II secretion system (T2SS), protein K NRL00_02540 PF05134 Type II secretion system (T2SS), protein L NRL00_02540 PF12693 GspL periplasmic domain NRL00_02545 PF04612 Type II secretion system (T2SS), protein M NRL00_02550 PF01203 Type II secretion system (T2SS), protein N NRL00_02555 PF00196 Bacterial regulatory proteins, luxR family NRL00_02560 PF00579 tRNA synthetases class I (W and Y) NRL00_02560 PF01479 S4 domain NRL00_02565 PF13419 Haloacid dehalogenase-like hydrolase NRL00_02570 PF00293 NUDIX domain NRL00_02575 PF00459 Inositol monophosphatase family NRL00_02580 PF03222 Tryptophan/tyrosine permease family NRL00_02585 PF01588 Putative tRNA binding domain NRL00_02590 PF06445 GyrI-like small molecule binding domain NRL00_02590 PF12833 Helix-turn-helix domain NRL00_02595 PF01340 Met Apo-repressor, MetJ NRL00_02600 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL00_02605 PF00696 Amino acid kinase family NRL00_02605 PF00742 Homoserine dehydrogenase NRL00_02605 PF03447 Homoserine dehydrogenase, NAD binding domain NRL00_02610 PF00311 Phosphoenolpyruvate carboxylase NRL00_02615 PF07687 Peptidase dimerisation domain NRL00_02615 PF01546 Peptidase family M20/M25/M40 NRL00_02620 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL00_02620 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL00_02625 PF00696 Amino acid kinase family NRL00_02630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL00_02630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL00_02635 PF00764 Arginosuccinate synthase NRL00_02640 PF00206 Lyase NRL00_02640 PF14698 Argininosuccinate lyase C-terminal NRL00_02650 PF01757 Acyltransferase family NRL00_02670 PF12464 Maltose acetyltransferase NRL00_02670 PF14602 Hexapeptide repeat of succinyl-transferase NRL00_02675 PF13194 Domain of unknown function (DUF4010) NRL00_02690 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_02695 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_02700 PF00005 ABC transporter NRL00_02700 PF12857 TOBE-like domain NRL00_02705 PF03466 LysR substrate binding domain NRL00_02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_02710 PF18416 N-acetylglucosamine binding protein domain 2 NRL00_02710 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRL00_02715 PF08269 Cache domain NRL00_02715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_02745 PF14685 Tricorn protease PDZ domain NRL00_02745 PF03572 Peptidase family S41 NRL00_02745 PF07676 WD40-like Beta Propeller Repeat NRL00_02745 PF14684 Tricorn protease C1 domain NRL00_02765 PF11230 Protein of unknown function (DUF3029) NRL00_02770 PF04055 Radical SAM superfamily NRL00_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_02780 PF03466 LysR substrate binding domain NRL00_02785 PF00155 Aminotransferase class I and II NRL00_02790 PF02583 Metal-sensitive transcriptional repressor NRL00_02805 PF18494 Pullulanase Ins domain NRL00_02805 PF17967 Pullulanase N2 domain NRL00_02805 PF11852 Domain of unknown function (DUF3372) NRL00_02805 PF03714 Bacterial pullanase-associated domain NRL00_02805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL00_02810 PF00403 Heavy-metal-associated domain NRL00_02815 PF08534 Redoxin NRL00_02825 PF00270 DEAD/DEAH box helicase NRL00_02825 PF00271 Helicase conserved C-terminal domain NRL00_02840 PF03372 Endonuclease/Exonuclease/phosphatase family NRL00_02855 PF06062 Uncharacterised protein family (UPF0231) NRL00_02860 PF05651 Putative sugar diacid recognition NRL00_02860 PF17853 GGDEF-like domain NRL00_02860 PF13556 PucR C-terminal helix-turn-helix domain NRL00_02865 PF02447 GntP family permease NRL00_02870 PF02595 Glycerate kinase family NRL00_02880 PF00255 Glutathione peroxidase NRL00_02885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_02885 PF03466 LysR substrate binding domain NRL00_02890 PF07670 Nucleoside recognition NRL00_02890 PF07662 Na+ dependent nucleoside transporter C-terminus NRL00_02890 PF01773 Na+ dependent nucleoside transporter N-terminus NRL00_02895 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRL00_02895 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRL00_02900 PF00472 RF-1 domain NRL00_02905 PF00543 Nitrogen regulatory protein P-II NRL00_02920 PF00005 ABC transporter NRL00_02920 PF08402 TOBE domain NRL00_02925 PF04261 Dyp-type peroxidase family NRL00_02930 PF02863 Arginine repressor, C-terminal domain NRL00_02930 PF01316 Arginine repressor, DNA binding domain NRL00_02935 PF00005 ABC transporter NRL00_02940 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_02945 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_02950 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_02955 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NRL00_02955 PF00056 lactate/malate dehydrogenase, NAD binding domain NRL00_02960 PF08238 Sel1 repeat NRL00_02965 PF00042 Globin NRL00_02965 PF00175 Oxidoreductase NAD-binding domain NRL00_02965 PF00970 Oxidoreductase FAD-binding domain NRL00_02970 PF02082 Transcriptional regulator NRL00_02975 PF03471 Transporter associated domain NRL00_02975 PF01595 Cyclin M transmembrane N-terminal domain NRL00_02975 PF00571 CBS domain NRL00_02980 PF01578 Cytochrome C assembly protein NRL00_02985 PF00448 SRP54-type protein, GTPase domain NRL00_02985 PF02881 SRP54-type protein, helical bundle domain NRL00_02985 PF02978 Signal peptide binding domain NRL00_02990 PF00886 Ribosomal protein S16 NRL00_02995 PF05239 PRC-barrel domain NRL00_02995 PF01782 RimM N-terminal domain NRL00_03000 PF01746 tRNA (Guanine-1)-methyltransferase NRL00_03005 PF01245 Ribosomal protein L19 NRL00_03015 PF02976 DNA mismatch repair enzyme MutH NRL00_03020 PF00293 NUDIX domain NRL00_03025 PF01590 GAF domain NRL00_03025 PF05524 PEP-utilising enzyme, N-terminal NRL00_03025 PF00391 PEP-utilising enzyme, mobile domain NRL00_03025 PF02896 PEP-utilising enzyme, TIM barrel domain NRL00_03030 PF01790 Prolipoprotein diacylglyceryl transferase NRL00_03035 PF00303 Thymidylate synthase NRL00_03040 PF06965 Na+/H+ antiporter 1 NRL00_03050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_03050 PF03466 LysR substrate binding domain NRL00_03055 PF01022 Bacterial regulatory protein, arsR family NRL00_03060 PF01649 Ribosomal protein S20 NRL00_03065 PF03023 Lipid II flippase MurJ NRL00_03070 PF01687 Riboflavin kinase NRL00_03070 PF06574 FAD synthetase NRL00_03075 PF06827 Zinc finger found in FPG and IleRS NRL00_03075 PF08264 Anticodon-binding domain of tRNA NRL00_03075 PF00133 tRNA synthetases class I (I, L, M and V) NRL00_03080 PF01252 Signal peptidase (SPase) II NRL00_03085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL00_03090 PF02401 LytB protein NRL00_03095 PF07963 Prokaryotic N-terminal methylation motif NRL00_03095 PF12019 Type II transport protein GspH NRL00_03115 PF05567 Neisseria PilC beta-propeller domain NRL00_03120 PF07963 Prokaryotic N-terminal methylation motif NRL00_03120 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor NRL00_03150 PF02540 NAD synthase NRL00_03150 PF00795 Carbon-nitrogen hydrolase NRL00_03155 PF00543 Nitrogen regulatory protein P-II NRL00_03165 PF02664 S-Ribosylhomocysteinase (LuxS) NRL00_03170 PF00990 Diguanylate cyclase, GGDEF domain NRL00_03175 PF17876 Cold shock domain NRL00_03175 PF00773 RNB domain NRL00_03175 PF00575 S1 RNA binding domain NRL00_03175 PF08206 Ribonuclease B OB domain NRL00_03175 PF08461 Ribonuclease R winged-helix domain NRL00_03200 PF00588 SpoU rRNA Methylase family NRL00_03200 PF08032 RNA 2'-O ribose methyltransferase substrate binding NRL00_03210 PF13673 Acetyltransferase (GNAT) domain NRL00_03215 PF00892 EamA-like transporter family NRL00_03235 PF07690 Major Facilitator Superfamily NRL00_03250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_03250 PF03466 LysR substrate binding domain NRL00_03260 PF01566 Natural resistance-associated macrophage protein NRL00_03265 PF01250 Ribosomal protein S6 NRL00_03270 PF01084 Ribosomal protein S18 NRL00_03275 PF01281 Ribosomal protein L9, N-terminal domain NRL00_03275 PF03948 Ribosomal protein L9, C-terminal domain NRL00_03280 PF00175 Oxidoreductase NAD-binding domain NRL00_03280 PF00970 Oxidoreductase FAD-binding domain NRL00_03305 PF00550 Phosphopantetheine attachment site NRL00_03305 PF14765 Polyketide synthase dehydratase NRL00_03305 PF08659 KR domain NRL00_03305 PF08990 Erythronolide synthase docking NRL00_03305 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL00_03305 PF00698 Acyl transferase domain NRL00_03305 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL00_03305 PF16197 Ketoacyl-synthetase C-terminal extension NRL00_03305 PF08240 Alcohol dehydrogenase GroES-like domain NRL00_03310 PF09335 SNARE associated Golgi protein NRL00_03315 PF00675 Insulinase (Peptidase family M16) NRL00_03315 PF05193 Peptidase M16 inactive domain NRL00_03320 PF04262 Glutamate-cysteine ligase NRL00_03325 PF00501 AMP-binding enzyme NRL00_03335 PF00583 Acetyltransferase (GNAT) family NRL00_03345 PF07728 AAA domain (dynein-related subfamily) NRL00_03345 PF17868 AAA lid domain NRL00_03345 PF12592 Protein of unknown function (DUF3763) NRL00_03350 PF05762 VWA domain containing CoxE-like protein NRL00_03360 PF00072 Response regulator receiver domain NRL00_03360 PF00990 Diguanylate cyclase, GGDEF domain NRL00_03365 PF16658 Class II release factor RF3, C-terminal domain NRL00_03365 PF03144 Elongation factor Tu domain 2 NRL00_03365 PF00009 Elongation factor Tu GTP binding domain NRL00_03375 PF00583 Acetyltransferase (GNAT) family NRL00_03380 PF00583 Acetyltransferase (GNAT) family NRL00_03385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL00_03395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_03395 PF03466 LysR substrate binding domain NRL00_03400 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRL00_03405 PF01425 Amidase NRL00_03420 PF00753 Metallo-beta-lactamase superfamily NRL00_03430 PF02627 Carboxymuconolactone decarboxylase family NRL00_03435 PF02525 Flavodoxin-like fold NRL00_03445 PF00271 Helicase conserved C-terminal domain NRL00_03445 PF00270 DEAD/DEAH box helicase NRL00_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_03450 PF03466 LysR substrate binding domain NRL00_03470 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase NRL00_03475 PF03150 Di-haem cytochrome c peroxidase NRL00_03475 PF00034 Cytochrome c NRL00_03490 PF00445 Ribonuclease T2 family NRL00_03500 PF03060 Nitronate monooxygenase NRL00_03530 PF09297 NADH pyrophosphatase zinc ribbon domain NRL00_03530 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NRL00_03530 PF00293 NUDIX domain NRL00_03535 PF00512 His Kinase A (phospho-acceptor) domain NRL00_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_03535 PF00672 HAMP domain NRL00_03535 PF16527 Two-component sensor protein CpxA, periplasmic domain NRL00_03540 PF00486 Transcriptional regulatory protein, C terminal NRL00_03540 PF00072 Response regulator receiver domain NRL00_03545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_03550 PF12704 MacB-like periplasmic core domain NRL00_03550 PF00005 ABC transporter NRL00_03550 PF02687 FtsX-like permease family NRL00_03555 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_03560 PF00005 ABC transporter NRL00_03565 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_03570 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_03575 PF00291 Pyridoxal-phosphate dependent enzyme NRL00_03580 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL00_03580 PF00326 Prolyl oligopeptidase family NRL00_03585 PF05170 AsmA family NRL00_03600 PF08335 GlnD PII-uridylyltransferase NRL00_03600 PF03710 Glutamate-ammonia ligase adenylyltransferase NRL00_03610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_03610 PF00672 HAMP domain NRL00_03610 PF02743 Cache domain NRL00_03615 PF00520 Ion transport protein NRL00_03615 PF00027 Cyclic nucleotide-binding domain NRL00_03620 PF08239 Bacterial SH3 domain NRL00_03625 PF00171 Aldehyde dehydrogenase family NRL00_03625 PF14850 DNA-binding domain of Proline dehydrogenase NRL00_03625 PF01619 Proline dehydrogenase NRL00_03625 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NRL00_03630 PF00293 NUDIX domain NRL00_03630 PF09297 NADH pyrophosphatase zinc ribbon domain NRL00_03635 PF01208 Uroporphyrinogen decarboxylase (URO-D) NRL00_03640 PF00480 ROK family NRL00_03645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL00_03645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL00_03650 PF00162 Phosphoglycerate kinase NRL00_03655 PF01116 Fructose-bisphosphate aldolase class-II NRL00_03660 PF01266 FAD dependent oxidoreductase NRL00_03680 PF11412 Disulphide bond corrector protein DsbC NRL00_03680 PF02683 Cytochrome C biogenesis protein transmembrane region NRL00_03685 PF03091 CutA1 divalent ion tolerance protein NRL00_03700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_03700 PF03466 LysR substrate binding domain NRL00_03705 PF01571 Aminomethyltransferase folate-binding domain NRL00_03710 PF03937 Flavinator of succinate dehydrogenase NRL00_03720 PF02910 Fumarate reductase flavoprotein C-term NRL00_03720 PF00890 FAD binding domain NRL00_03725 PF04542 Sigma-70 region 2 NRL00_03725 PF08281 Sigma-70, region 4 NRL00_03730 PF03872 Anti sigma-E protein RseA, N-terminal domain NRL00_03730 PF03873 Anti sigma-E protein RseA, C-terminal domain NRL00_03735 PF17188 MucB/RseB C-terminal domain NRL00_03735 PF03888 MucB/RseB N-terminal domain NRL00_03745 PF00009 Elongation factor Tu GTP binding domain NRL00_03745 PF03144 Elongation factor Tu domain 2 NRL00_03745 PF00679 Elongation factor G C-terminus NRL00_03745 PF06421 GTP-binding protein LepA C-terminus NRL00_03750 PF10502 Signal peptidase, peptidase S26 NRL00_03755 PF14622 Ribonuclease-III-like NRL00_03755 PF00035 Double-stranded RNA binding motif NRL00_03760 PF01926 50S ribosome-binding GTPase NRL00_03760 PF07650 KH domain NRL00_03765 PF11967 Recombination protein O N terminal NRL00_03765 PF02565 Recombination protein O C terminal NRL00_03770 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NRL00_03775 PF01116 Fructose-bisphosphate aldolase class-II NRL00_03780 PF01979 Amidohydrolase family NRL00_03785 PF03610 PTS system fructose IIA component NRL00_03790 PF03613 PTS system mannose/fructose/sorbose family IID component NRL00_03795 PF03609 PTS system sorbose-specific iic component NRL00_03800 PF03830 PTS system sorbose subfamily IIB component NRL00_03805 PF01380 SIS domain NRL00_03810 PF08013 Tagatose 6 phosphate kinase NRL00_03815 PF00455 DeoR C terminal sensor domain NRL00_03815 PF08220 DeoR-like helix-turn-helix domain NRL00_03820 PF01510 N-acetylmuramoyl-L-alanine amidase NRL00_03825 PF07308 Protein of unknown function (DUF1456) NRL00_03830 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL00_03830 PF00072 Response regulator receiver domain NRL00_03830 PF01627 Hpt domain NRL00_03830 PF00512 His Kinase A (phospho-acceptor) domain NRL00_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_03830 PF00672 HAMP domain NRL00_03835 PF05958 tRNA (Uracil-5-)-methyltransferase NRL00_03835 PF01938 TRAM domain NRL00_03840 PF02824 TGS domain NRL00_03840 PF04607 Region found in RelA / SpoT proteins NRL00_03840 PF13291 ACT domain NRL00_03845 PF03819 MazG nucleotide pyrophosphohydrolase domain NRL00_03850 PF00117 Glutamine amidotransferase class-I NRL00_03850 PF06418 CTP synthase N-terminus NRL00_03855 PF00113 Enolase, C-terminal TIM barrel domain NRL00_03855 PF03952 Enolase, N-terminal domain NRL00_03860 PF04977 Septum formation initiator NRL00_03865 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRL00_03870 PF02542 YgbB family NRL00_03875 PF01142 tRNA pseudouridine synthase D (TruD) NRL00_03880 PF01975 Survival protein SurE NRL00_03890 PF09335 SNARE associated Golgi protein NRL00_03895 PF01551 Peptidase family M23 NRL00_03895 PF01476 LysM domain NRL00_03900 PF00140 Sigma-70 factor, region 1.2 NRL00_03900 PF04542 Sigma-70 region 2 NRL00_03900 PF04539 Sigma-70 region 3 NRL00_03900 PF04545 Sigma-70, region 4 NRL00_03905 PF00814 Glycoprotease family NRL00_03910 PF01165 Ribosomal protein S21 NRL00_03915 PF09424 Yqey-like protein NRL00_03920 PF01807 CHC2 zinc finger NRL00_03920 PF08278 DNA primase DnaG DnaB-binding NRL00_03920 PF10410 DnaB-helicase binding domain of primase NRL00_03920 PF08275 DNA primase catalytic core, N-terminal domain NRL00_03925 PF04546 Sigma-70, non-essential region NRL00_03925 PF04545 Sigma-70, region 4 NRL00_03925 PF04539 Sigma-70 region 3 NRL00_03925 PF04542 Sigma-70 region 2 NRL00_03925 PF00140 Sigma-70 factor, region 1.2 NRL00_03925 PF03979 Sigma-70 factor, region 1.1 NRL00_03945 PF02843 Phosphoribosylglycinamide synthetase, C domain NRL00_03945 PF02844 Phosphoribosylglycinamide synthetase, N domain NRL00_03945 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NRL00_03950 PF02142 MGS-like domain NRL00_03950 PF01808 AICARFT/IMPCHase bienzyme NRL00_03955 PF13411 MerR HTH family regulatory protein NRL00_03965 PF03889 Alternative ribosome-rescue factor A NRL00_03970 PF04055 Radical SAM superfamily NRL00_03970 PF06969 HemN C-terminal domain NRL00_03975 PF01725 Ham1 family NRL00_03980 PF07690 Major Facilitator Superfamily NRL00_03985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL00_03985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRL00_03995 PF13302 Acetyltransferase (GNAT) domain NRL00_04000 PF13302 Acetyltransferase (GNAT) domain NRL00_04005 PF03413 Peptidase propeptide and YPEB domain NRL00_04005 PF04151 Bacterial pre-peptidase C-terminal domain NRL00_04005 PF02868 Thermolysin metallopeptidase, alpha-helical domain NRL00_04005 PF01447 Thermolysin metallopeptidase, catalytic domain NRL00_04005 PF07504 Fungalysin/Thermolysin Propeptide Motif NRL00_04010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_04010 PF03466 LysR substrate binding domain NRL00_04015 PF07690 Major Facilitator Superfamily NRL00_04020 PF00267 Gram-negative porin NRL00_04025 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRL00_04030 PF00206 Lyase NRL00_04030 PF10415 Fumarase C C-terminus NRL00_04035 PF04186 FxsA cytoplasmic membrane protein NRL00_04040 PF01554 MatE NRL00_04045 PF00166 Chaperonin 10 Kd subunit NRL00_04050 PF00118 TCP-1/cpn60 chaperonin family NRL00_04060 PF00563 EAL domain NRL00_04060 PF13188 PAS domain NRL00_04060 PF03707 Bacterial signalling protein N terminal repeat NRL00_04060 PF00990 Diguanylate cyclase, GGDEF domain NRL00_04070 PF00849 RNA pseudouridylate synthase NRL00_04075 PF18337 RapA N-terminal Tudor like domain NRL00_04075 PF18339 RapA N-terminal Tudor like domain 1 NRL00_04075 PF00176 SNF2 family N-terminal domain NRL00_04075 PF12137 RNA polymerase recycling family C-terminal NRL00_04075 PF00271 Helicase conserved C-terminal domain NRL00_04110 PF00317 Ribonucleotide reductase, all-alpha domain NRL00_04110 PF08343 Ribonucleotide reductase N-terminal NRL00_04110 PF02867 Ribonucleotide reductase, barrel domain NRL00_04120 PF02562 PhoH-like protein NRL00_04120 PF13638 PIN domain NRL00_04125 PF00005 ABC transporter NRL00_04130 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_04150 PF00694 Aconitase C-terminal domain NRL00_04155 PF00330 Aconitase family (aconitate hydratase) NRL00_04160 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL00_04165 PF00682 HMGL-like NRL00_04165 PF08502 LeuA allosteric (dimerisation) domain NRL00_04175 PF01569 PAP2 superfamily NRL00_04190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL00_04190 PF00205 Thiamine pyrophosphate enzyme, central domain NRL00_04190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL00_04195 PF10369 Small subunit of acetolactate synthase NRL00_04200 PF01515 Phosphate acetyl/butaryl transferase NRL00_04200 PF07085 DRTGG domain NRL00_04205 PF00871 Acetokinase family NRL00_04210 PF04217 Protein of unknown function, DUF412 NRL00_04215 PF03887 YfbU domain NRL00_04220 PF00578 AhpC/TSA family NRL00_04225 PF01842 ACT domain NRL00_04230 PF00701 Dihydrodipicolinate synthetase family NRL00_04235 PF06804 NlpB/DapX lipoprotein NRL00_04240 PF01259 SAICAR synthetase NRL00_04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_04250 PF03466 LysR substrate binding domain NRL00_04255 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NRL00_04275 PF00512 His Kinase A (phospho-acceptor) domain NRL00_04275 PF18415 Histidine kinase receptor ArcB trans-membrane domain NRL00_04275 PF00989 PAS fold NRL00_04275 PF00072 Response regulator receiver domain NRL00_04275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_04275 PF01627 Hpt domain NRL00_04280 PF01966 HD domain NRL00_04280 PF13286 Phosphohydrolase-associated domain NRL00_04290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_04290 PF00512 His Kinase A (phospho-acceptor) domain NRL00_04290 PF00072 Response regulator receiver domain NRL00_04290 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL00_04295 PF00990 Diguanylate cyclase, GGDEF domain NRL00_04295 PF00563 EAL domain NRL00_04295 PF03707 Bacterial signalling protein N terminal repeat NRL00_04300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_04300 PF12729 Four helix bundle sensory module for signal transduction NRL00_04300 PF00672 HAMP domain NRL00_04305 PF02357 Transcription termination factor nusG NRL00_04310 PF03180 NLPA lipoprotein NRL00_04315 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_04320 PF00005 ABC transporter NRL00_04320 PF09383 NIL domain NRL00_04330 PF00480 ROK family NRL00_04335 PF08331 Domain of unknown function (DUF1730) NRL00_04340 PF01256 Carbohydrate kinase NRL00_04340 PF03853 YjeF-related protein N-terminus NRL00_04345 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NRL00_04350 PF01520 N-acetylmuramoyl-L-alanine amidase NRL00_04355 PF01119 DNA mismatch repair protein, C-terminal domain NRL00_04355 PF08676 MutL C terminal dimerisation domain NRL00_04365 PF17209 Hfq protein NRL00_04370 PF01926 50S ribosome-binding GTPase NRL00_04370 PF13167 GTP-binding GTPase N-terminal NRL00_04370 PF16360 GTP-binding GTPase Middle Region NRL00_04375 PF01145 SPFH domain / Band 7 family NRL00_04375 PF12221 Bacterial membrane protein N terminal NRL00_04380 PF01145 SPFH domain / Band 7 family NRL00_04385 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NRL00_04390 PF00348 Polyprenyl synthetase NRL00_04395 PF00829 Ribosomal prokaryotic L21 protein NRL00_04400 PF01016 Ribosomal L27 protein NRL00_04405 PF01018 GTP1/OBG NRL00_04405 PF01926 50S ribosome-binding GTPase NRL00_04410 PF07670 Nucleoside recognition NRL00_04415 PF00501 AMP-binding enzyme NRL00_04415 PF13193 AMP-binding enzyme C-terminal domain NRL00_04435 PF00296 Luciferase-like monooxygenase NRL00_04445 PF00149 Calcineurin-like phosphoesterase NRL00_04450 PF04379 ApaG domain NRL00_04455 PF00398 Ribosomal RNA adenine dimethylase NRL00_04460 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NRL00_04465 PF00639 PPIC-type PPIASE domain NRL00_04465 PF09312 SurA N-terminal domain NRL00_04470 PF04453 LPS transport system D NRL00_04470 PF03968 OstA-like protein NRL00_04475 PF01636 Phosphotransferase enzyme family NRL00_04480 PF00483 Nucleotidyl transferase NRL00_04485 PF00226 DnaJ domain NRL00_04485 PF05099 Tellurite resistance protein TerB NRL00_04490 PF00860 Permease family NRL00_04500 PF00005 ABC transporter NRL00_04500 PF12848 ABC transporter NRL00_04515 PF01048 Phosphorylase superfamily NRL00_04520 PF01464 Transglycosylase SLT domain NRL00_04545 PF00005 ABC transporter NRL00_04550 PF01032 FecCD transport family NRL00_04560 PF06228 Haem utilisation ChuX/HutX NRL00_04565 PF01243 Pyridoxamine 5'-phosphate oxidase NRL00_04585 PF07715 TonB-dependent Receptor Plug Domain NRL00_04585 PF00593 TonB dependent receptor NRL00_04590 PF12832 MFS_1 like family NRL00_04600 PF13443 Cro/C1-type HTH DNA-binding domain NRL00_04610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_04610 PF00512 His Kinase A (phospho-acceptor) domain NRL00_04610 PF00989 PAS fold NRL00_04615 PF08329 Chitinase A, N-terminal domain NRL00_04615 PF00704 Glycosyl hydrolases family 18 NRL00_04620 PF17945 Beta/Gamma crystallin NRL00_04620 PF12561 ToxR activated gene A lipoprotein domain NRL00_04625 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRL00_04625 PF18416 N-acetylglucosamine binding protein domain 2 NRL00_04630 PF08241 Methyltransferase domain NRL00_04635 PF00027 Cyclic nucleotide-binding domain NRL00_04635 PF13545 Crp-like helix-turn-helix domain NRL00_04640 PF02566 OsmC-like protein NRL00_04655 PF00485 Phosphoribulokinase / Uridine kinase family NRL00_04660 PF00893 Small Multidrug Resistance protein NRL00_04665 PF00892 EamA-like transporter family NRL00_04670 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NRL00_04675 PF01522 Polysaccharide deacetylase NRL00_04680 PF01370 NAD dependent epimerase/dehydratase family NRL00_04680 PF02911 Formyl transferase, C-terminal domain NRL00_04680 PF00551 Formyl transferase NRL00_04685 PF00535 Glycosyl transferase family 2 NRL00_04690 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRL00_04695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRL00_04695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRL00_04695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRL00_04700 PF06794 Uncharacterised protein family (UPF0270) NRL00_04705 PF00561 alpha/beta hydrolase fold NRL00_04710 PF01584 CheW-like domain NRL00_04710 PF00072 Response regulator receiver domain NRL00_04720 PF09526 Probable metal-binding protein (DUF2387) NRL00_04725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL00_04730 PF04102 SlyX NRL00_04740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL00_04740 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL00_04745 PF02954 Bacterial regulatory protein, Fis family NRL00_04745 PF00072 Response regulator receiver domain NRL00_04745 PF00158 Sigma-54 interaction domain NRL00_04765 PF02872 5'-nucleotidase, C-terminal domain NRL00_04765 PF00149 Calcineurin-like phosphoesterase NRL00_04770 PF12792 CSS motif domain associated with EAL NRL00_04770 PF00563 EAL domain NRL00_04780 PF00772 DnaB-like helicase N terminal domain NRL00_04780 PF03796 DnaB-like helicase C terminal domain NRL00_04785 PF00842 Alanine racemase, C-terminal domain NRL00_04785 PF01168 Alanine racemase, N-terminal domain NRL00_04790 PF12838 4Fe-4S dicluster domain NRL00_04795 PF16325 Peptidase family U32 C-terminal domain NRL00_04795 PF01136 Peptidase family U32 NRL00_04800 PF00563 EAL domain NRL00_04800 PF01590 GAF domain NRL00_04800 PF00990 Diguanylate cyclase, GGDEF domain NRL00_04800 PF00989 PAS fold NRL00_04825 PF00266 Aminotransferase class-V NRL00_04830 PF01339 CheB methylesterase NRL00_04830 PF00072 Response regulator receiver domain NRL00_04835 PF03975 CheD chemotactic sensory transduction NRL00_04840 PF01739 CheR methyltransferase, SAM binding domain NRL00_04840 PF03705 CheR methyltransferase, all-alpha domain NRL00_04845 PF00672 HAMP domain NRL00_04845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_04850 PF01584 CheW-like domain NRL00_04855 PF12729 Four helix bundle sensory module for signal transduction NRL00_04855 PF00672 HAMP domain NRL00_04855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_04860 PF01627 Hpt domain NRL00_04860 PF01584 CheW-like domain NRL00_04860 PF09078 CheY binding NRL00_04860 PF02895 Signal transducing histidine kinase, homodimeric domain NRL00_04860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_04870 PF00072 Response regulator receiver domain NRL00_04875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_04875 PF00672 HAMP domain NRL00_04880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL00_04880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL00_04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_04885 PF03466 LysR substrate binding domain NRL00_04890 PF01810 LysE type translocator NRL00_04895 PF01136 Peptidase family U32 NRL00_04895 PF12392 Collagenase NRL00_04910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRL00_04910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRL00_04915 PF06029 AlkA N-terminal domain NRL00_04915 PF02805 Metal binding domain of Ada NRL00_04915 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL00_04915 PF12833 Helix-turn-helix domain NRL00_04925 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NRL00_04950 PF00106 short chain dehydrogenase NRL00_04955 PF03573 outer membrane porin, OprD family NRL00_04960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_04960 PF00672 HAMP domain NRL00_04960 PF02743 Cache domain NRL00_04995 PF00800 Prephenate dehydratase NRL00_04995 PF01817 Chorismate mutase type II NRL00_05025 PF08349 Protein of unknown function (DUF1722) NRL00_05030 PF13411 MerR HTH family regulatory protein NRL00_05035 PF00875 DNA photolyase NRL00_05035 PF03441 FAD binding domain of DNA photolyase NRL00_05045 PF00106 short chain dehydrogenase NRL00_05085 PF00210 Ferritin-like domain NRL00_05090 PF03063 Prismane/CO dehydrogenase family NRL00_05095 PF00970 Oxidoreductase FAD-binding domain NRL00_05095 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL00_05095 PF00175 Oxidoreductase NAD-binding domain NRL00_05100 PF16363 GDP-mannose 4,6 dehydratase NRL00_05105 PF06965 Na+/H+ antiporter 1 NRL00_05105 PF13462 Thioredoxin NRL00_05115 PF08479 POTRA domain, ShlB-type NRL00_05115 PF17287 POTRA domain NRL00_05115 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NRL00_05120 PF04829 Pre-toxin domain with VENN motif NRL00_05120 PF05860 haemagglutination activity domain NRL00_05120 PF13332 Hemagglutinin repeat NRL00_05120 PF04829 Pre-toxin domain with VENN motif NRL00_05120 PF13332 Hemagglutinin repeat NRL00_05120 PF05860 haemagglutination activity domain NRL00_05140 PF13332 Hemagglutinin repeat NRL00_05140 PF05860 haemagglutination activity domain NRL00_05140 PF04829 Pre-toxin domain with VENN motif NRL00_05170 PF04829 Pre-toxin domain with VENN motif NRL00_05170 PF15605 Bacterial toxin 28 NRL00_05170 PF05860 haemagglutination activity domain NRL00_05170 PF13332 Hemagglutinin repeat NRL00_05180 PF03472 Autoinducer binding domain NRL00_05180 PF00196 Bacterial regulatory proteins, luxR family NRL00_05185 PF05638 Type VI secretion system effector, Hcp NRL00_05195 PF04717 Type VI secretion system, phage-baseplate injector NRL00_05200 PF13503 Domain of unknown function (DUF4123) NRL00_05230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_05230 PF03466 LysR substrate binding domain NRL00_05235 PF03306 Alpha-acetolactate decarboxylase NRL00_05240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL00_05240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL00_05240 PF00205 Thiamine pyrophosphate enzyme, central domain NRL00_05245 PF01965 DJ-1/PfpI family NRL00_05250 PF02558 Ketopantoate reductase PanE/ApbA NRL00_05250 PF08546 Ketopantoate reductase PanE/ApbA C terminal NRL00_05255 PF04461 Protein of unknown function (DUF520) NRL00_05260 PF03502 Nucleoside-specific channel-forming protein, Tsx NRL00_05265 PF07690 Major Facilitator Superfamily NRL00_05275 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRL00_05285 PF05175 Methyltransferase small domain NRL00_05290 PF01722 BolA-like protein NRL00_05295 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NRL00_05295 PF11973 NQRA C-terminal domain NRL00_05300 PF03116 NQR2, RnfD, RnfE family NRL00_05305 PF04205 FMN-binding domain NRL00_05310 PF02508 Rnf-Nqr subunit, membrane protein NRL00_05315 PF02508 Rnf-Nqr subunit, membrane protein NRL00_05320 PF00970 Oxidoreductase FAD-binding domain NRL00_05320 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL00_05320 PF00175 Oxidoreductase NAD-binding domain NRL00_05325 PF02424 ApbE family NRL00_05340 PF11798 IMS family HHH motif NRL00_05340 PF00817 impB/mucB/samB family NRL00_05340 PF11799 impB/mucB/samB family C-terminal domain NRL00_05345 PF00672 HAMP domain NRL00_05345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_05350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_05350 PF03466 LysR substrate binding domain NRL00_05360 PF04241 Protein of unknown function (DUF423) NRL00_05365 PF01728 FtsJ-like methyltransferase NRL00_05365 PF18125 RlmM ferredoxin-like domain NRL00_05375 PF18324 Hypothetical protein TT1725 NRL00_05375 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL00_05380 PF01367 5'-3' exonuclease, C-terminal SAM fold NRL00_05380 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRL00_05385 PF03641 Possible lysine decarboxylase NRL00_05385 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NRL00_05385 PF11892 Domain of unknown function (DUF3412) NRL00_05390 PF00990 Diguanylate cyclase, GGDEF domain NRL00_05400 PF14489 QueF-like protein NRL00_05400 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NRL00_05405 PF07348 Syd protein (SUKH-2) NRL00_05410 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NRL00_05435 PF04287 tRNA pseudouridine synthase C NRL00_05440 PF00849 RNA pseudouridylate synthase NRL00_05445 PF00258 Flavodoxin NRL00_05450 PF02264 LamB porin NRL00_05455 PF07148 Maltose operon periplasmic protein precursor (MalM) NRL00_05460 PF02378 Phosphotransferase system, EIIC NRL00_05460 PF00367 phosphotransferase system, EIIB NRL00_05465 PF11944 Protein of unknown function (DUF3461) NRL00_05470 PF14602 Hexapeptide repeat of succinyl-transferase NRL00_05470 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NRL00_05470 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_05475 PF08335 GlnD PII-uridylyltransferase NRL00_05475 PF01842 ACT domain NRL00_05475 PF01966 HD domain NRL00_05475 PF01909 Nucleotidyltransferase domain NRL00_05480 PF00557 Metallopeptidase family M24 NRL00_05485 PF00318 Ribosomal protein S2 NRL00_05490 PF00889 Elongation factor TS NRL00_05495 PF00696 Amino acid kinase family NRL00_05500 PF01765 Ribosome recycling factor NRL00_05505 PF01255 Putative undecaprenyl diphosphate synthase NRL00_05515 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NRL00_05515 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NRL00_05515 PF13288 DXP reductoisomerase C-terminal domain NRL00_05520 PF17820 PDZ domain NRL00_05520 PF02163 Peptidase family M50 NRL00_05525 PF01103 Surface antigen NRL00_05525 PF07244 Surface antigen variable number repeat NRL00_05530 PF03938 Outer membrane protein (OmpH-like) NRL00_05535 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NRL00_05535 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_05540 PF07977 FabA-like domain NRL00_05545 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_05545 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NRL00_05550 PF02684 Lipid-A-disaccharide synthetase NRL00_05555 PF01351 Ribonuclease HII NRL00_05560 PF01336 OB-fold nucleic acid binding domain NRL00_05560 PF07733 Bacterial DNA polymerase III alpha NTPase domain NRL00_05560 PF02811 PHP domain NRL00_05560 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NRL00_05560 PF14579 Helix-hairpin-helix motif NRL00_05565 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NRL00_05570 PF00486 Transcriptional regulatory protein, C terminal NRL00_05570 PF18500 CadC C-terminal domain 1 NRL00_05575 PF13520 Amino acid permease NRL00_05580 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NRL00_05580 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NRL00_05580 PF01276 Orn/Lys/Arg decarboxylase, major domain NRL00_05585 PF08543 Phosphomethylpyrimidine kinase NRL00_05595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_05595 PF03466 LysR substrate binding domain NRL00_05605 PF13520 Amino acid permease NRL00_05610 PF13302 Acetyltransferase (GNAT) domain NRL00_05620 PF00834 Ribulose-phosphate 3 epimerase family NRL00_05625 PF13419 Haloacid dehalogenase-like hydrolase NRL00_05630 PF00579 tRNA synthetases class I (W and Y) NRL00_05640 PF00117 Glutamine amidotransferase class-I NRL00_05645 PF00202 Aminotransferase class-III NRL00_05650 PF04958 Arginine N-succinyltransferase beta subunit NRL00_05655 PF00171 Aldehyde dehydrogenase family NRL00_05665 PF13419 Haloacid dehalogenase-like hydrolase NRL00_05670 PF07690 Major Facilitator Superfamily NRL00_05675 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRL00_05675 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRL00_05675 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRL00_05675 PF10371 Domain of unknown function NRL00_05675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL00_05700 PF00155 Aminotransferase class I and II NRL00_05700 PF00392 Bacterial regulatory proteins, gntR family NRL00_05705 PF07690 Major Facilitator Superfamily NRL00_05710 PF12848 ABC transporter NRL00_05710 PF00005 ABC transporter NRL00_05720 PF00128 Alpha amylase, catalytic domain NRL00_05720 PF16657 Maltogenic Amylase, C-terminal domain NRL00_05730 PF04266 ASCH domain NRL00_05740 PF01048 Phosphorylase superfamily NRL00_05745 PF04973 Nicotinamide mononucleotide transporter NRL00_05750 PF02080 TrkA-C domain NRL00_05750 PF03600 Citrate transporter NRL00_05790 PF06071 Protein of unknown function (DUF933) NRL00_05790 PF01926 50S ribosome-binding GTPase NRL00_05795 PF01195 Peptidyl-tRNA hydrolase NRL00_05800 PF00149 Calcineurin-like phosphoesterase NRL00_05800 PF02872 5'-nucleotidase, C-terminal domain NRL00_05805 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NRL00_05805 PF14572 Phosphoribosyl synthetase-associated domain NRL00_05815 PF00288 GHMP kinases N terminal domain NRL00_05815 PF08544 GHMP kinases C terminal NRL00_05820 PF03550 Outer membrane lipoprotein LolB NRL00_05825 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NRL00_05825 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NRL00_05825 PF01488 Shikimate / quinate 5-dehydrogenase NRL00_05830 PF03462 PCRF domain NRL00_05830 PF00472 RF-1 domain NRL00_05835 PF13847 Methyltransferase domain NRL00_05835 PF17827 PrmC N-terminal domain NRL00_05845 PF13369 Transglutaminase-like superfamily NRL00_05850 PF00793 DAHP synthetase I family NRL00_05855 PF00375 Sodium:dicarboxylate symporter family NRL00_05860 PF01228 Glycine radical NRL00_05865 PF03167 Uracil DNA glycosylase superfamily NRL00_05880 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRL00_05885 PF01235 Sodium:alanine symporter family NRL00_05890 PF11992 Domain of unknown function (DUF3488) NRL00_05890 PF13559 Domain of unknown function (DUF4129) NRL00_05890 PF01841 Transglutaminase-like superfamily NRL00_05900 PF17863 AAA lid domain NRL00_05900 PF07726 ATPase family associated with various cellular activities (AAA) NRL00_05905 PF00144 Beta-lactamase NRL00_05910 PF00854 POT family NRL00_05915 PF03652 Holliday junction resolvase NRL00_05920 PF02622 Uncharacterized ACR, COG1678 NRL00_05925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_05925 PF12729 Four helix bundle sensory module for signal transduction NRL00_05925 PF00672 HAMP domain NRL00_05930 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NRL00_05930 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NRL00_05935 PF04452 RNA methyltransferase NRL00_05940 PF04231 Endonuclease I NRL00_05945 PF17283 SprT-like zinc ribbon domain NRL00_05945 PF10263 SprT-like family NRL00_05950 PF00438 S-adenosylmethionine synthetase, N-terminal domain NRL00_05950 PF02773 S-adenosylmethionine synthetase, C-terminal domain NRL00_05950 PF02772 S-adenosylmethionine synthetase, central domain NRL00_05955 PF02779 Transketolase, pyrimidine binding domain NRL00_05955 PF02780 Transketolase, C-terminal domain NRL00_05955 PF00456 Transketolase, thiamine diphosphate binding domain NRL00_05965 PF01042 Endoribonuclease L-PSP NRL00_05970 PF03702 Anhydro-N-acetylmuramic acid kinase NRL00_05975 PF01551 Peptidase family M23 NRL00_05975 PF01476 LysM domain NRL00_05975 PF08525 Opacity-associated protein A N-terminal motif NRL00_05980 PF00579 tRNA synthetases class I (W and Y) NRL00_05985 PF01204 Trehalase NRL00_05995 PF01161 Phosphatidylethanolamine-binding protein NRL00_06000 PF00709 Adenylosuccinate synthetase NRL00_06005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_06005 PF03466 LysR substrate binding domain NRL00_06015 PF00155 Aminotransferase class I and II NRL00_06020 PF07690 Major Facilitator Superfamily NRL00_06025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_06025 PF03466 LysR substrate binding domain NRL00_06030 PF00106 short chain dehydrogenase NRL00_06035 PF08496 Peptidase family S49 N-terminal NRL00_06035 PF01343 Peptidase family S49 NRL00_06040 PF04996 Succinylarginine dihydrolase NRL00_06045 PF08272 Topoisomerase I zinc-ribbon-like NRL00_06045 PF01131 DNA topoisomerase NRL00_06045 PF01751 Toprim domain NRL00_06045 PF01396 Topoisomerase DNA binding C4 zinc finger NRL00_06060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_06060 PF08447 PAS fold NRL00_06065 PF00728 Glycosyl hydrolase family 20, catalytic domain NRL00_06065 PF02838 Glycosyl hydrolase family 20, domain 2 NRL00_06070 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRL00_06080 PF00005 ABC transporter NRL00_06080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_06085 PF00005 ABC transporter NRL00_06085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_06090 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL00_06090 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_06095 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_06100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_06105 PF09308 LuxQ, periplasmic NRL00_06105 PF00512 His Kinase A (phospho-acceptor) domain NRL00_06105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_06105 PF00072 Response regulator receiver domain NRL00_06125 PF10725 Protein of unknown function (DUF2517) NRL00_06145 PF05114 Protein of unknown function (DUF692) NRL00_06165 PF08447 PAS fold NRL00_06165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_06165 PF13426 PAS domain NRL00_06180 PF04632 Fusaric acid resistance protein family NRL00_06185 PF00994 Probable molybdopterin binding domain NRL00_06185 PF03454 MoeA C-terminal region (domain IV) NRL00_06185 PF03453 MoeA N-terminal region (domain I and II) NRL00_06190 PF12804 MobA-like NTP transferase domain NRL00_06195 PF00005 ABC transporter NRL00_06200 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_06205 PF12849 PBP superfamily domain NRL00_06210 PF02954 Bacterial regulatory protein, Fis family NRL00_06210 PF00072 Response regulator receiver domain NRL00_06210 PF00158 Sigma-54 interaction domain NRL00_06215 PF00989 PAS fold NRL00_06215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_06215 PF00512 His Kinase A (phospho-acceptor) domain NRL00_06220 PF12728 Helix-turn-helix domain NRL00_06220 PF12727 PBP superfamily domain NRL00_06225 PF02634 FdhD/NarQ family NRL00_06260 PF12838 4Fe-4S dicluster domain NRL00_06260 PF01568 Molydopterin dinucleotide binding domain NRL00_06260 PF00384 Molybdopterin oxidoreductase NRL00_06260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL00_06260 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRL00_06260 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRL00_06260 PF12838 4Fe-4S dicluster domain NRL00_06260 PF00384 Molybdopterin oxidoreductase NRL00_06260 PF01568 Molydopterin dinucleotide binding domain NRL00_06260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL00_06265 PF13247 4Fe-4S dicluster domain NRL00_06275 PF00390 Malic enzyme, N-terminal domain NRL00_06275 PF03949 Malic enzyme, NAD binding domain NRL00_06285 PF01458 Uncharacterized protein family (UPF0051) NRL00_06290 PF00860 Permease family NRL00_06295 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_06300 PF00672 HAMP domain NRL00_06300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_06310 PF10282 Lactonase, 7-bladed beta-propeller NRL00_06320 PF00924 Mechanosensitive ion channel NRL00_06320 PF12795 Mechanosensitive ion channel porin domain NRL00_06320 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL00_06325 PF00224 Pyruvate kinase, barrel domain NRL00_06325 PF02887 Pyruvate kinase, alpha/beta domain NRL00_06335 PF04151 Bacterial pre-peptidase C-terminal domain NRL00_06335 PF04389 Peptidase family M28 NRL00_06340 PF02254 TrkA-N domain NRL00_06340 PF00999 Sodium/hydrogen exchanger family NRL00_06350 PF04381 Putative exonuclease, RdgC NRL00_06360 PF00149 Calcineurin-like phosphoesterase NRL00_06360 PF12320 Type 5 capsule protein repressor C-terminal domain NRL00_06365 PF13476 AAA domain NRL00_06380 PF01292 Prokaryotic cytochrome b561 NRL00_06385 PF00072 Response regulator receiver domain NRL00_06385 PF00990 Diguanylate cyclase, GGDEF domain NRL00_06390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL00_06395 PF02896 PEP-utilising enzyme, TIM barrel domain NRL00_06395 PF05524 PEP-utilising enzyme, N-terminal NRL00_06395 PF00391 PEP-utilising enzyme, mobile domain NRL00_06400 PF00381 PTS HPr component phosphorylation site NRL00_06405 PF00291 Pyridoxal-phosphate dependent enzyme NRL00_06410 PF17871 AAA lid domain NRL00_06410 PF10431 C-terminal, D2-small domain, of ClpB protein NRL00_06410 PF00004 ATPase family associated with various cellular activities (AAA) NRL00_06410 PF07724 AAA domain (Cdc48 subfamily) NRL00_06410 PF02861 Clp amino terminal domain, pathogenicity island component NRL00_06420 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL00_06420 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL00_06425 PF01966 HD domain NRL00_06425 PF00672 HAMP domain NRL00_06430 PF18389 TrmO C-terminal domain NRL00_06430 PF01980 tRNA-methyltransferase O NRL00_06450 PF00005 ABC transporter NRL00_06450 PF00664 ABC transporter transmembrane region NRL00_06455 PF00005 ABC transporter NRL00_06455 PF00664 ABC transporter transmembrane region NRL00_06470 PF00486 Transcriptional regulatory protein, C terminal NRL00_06470 PF00072 Response regulator receiver domain NRL00_06480 PF03737 Aldolase/RraA NRL00_06495 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NRL00_06500 PF00588 SpoU rRNA Methylase family NRL00_06505 PF00696 Amino acid kinase family NRL00_06505 PF01842 ACT domain NRL00_06505 PF13840 ACT domain NRL00_06505 PF00742 Homoserine dehydrogenase NRL00_06505 PF03447 Homoserine dehydrogenase, NAD binding domain NRL00_06510 PF00288 GHMP kinases N terminal domain NRL00_06510 PF08544 GHMP kinases C terminal NRL00_06515 PF14821 Threonine synthase N terminus NRL00_06515 PF00291 Pyridoxal-phosphate dependent enzyme NRL00_06535 PF01048 Phosphorylase superfamily NRL00_06555 PF00563 EAL domain NRL00_06555 PF01590 GAF domain NRL00_06555 PF00990 Diguanylate cyclase, GGDEF domain NRL00_06555 PF00360 Phytochrome region NRL00_06560 PF01627 Hpt domain NRL00_06560 PF00072 Response regulator receiver domain NRL00_06560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL00_06560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_06560 PF00672 HAMP domain NRL00_06560 PF00512 His Kinase A (phospho-acceptor) domain NRL00_06565 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NRL00_06570 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL00_06570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL00_06575 PF02690 Na+/Pi-cotransporter NRL00_06585 PF13520 Amino acid permease NRL00_06595 PF00324 Amino acid permease NRL00_06605 PF00202 Aminotransferase class-III NRL00_06610 PF00171 Aldehyde dehydrogenase family NRL00_06615 PF07883 Cupin domain NRL00_06615 PF01381 Helix-turn-helix NRL00_06620 PF01266 FAD dependent oxidoreductase NRL00_06635 PF00816 H-NS histone family NRL00_06640 PF00793 DAHP synthetase I family NRL00_06645 PF04954 Siderophore-interacting protein NRL00_06645 PF08021 Siderophore-interacting FAD-binding domain NRL00_06650 PF02321 Outer membrane efflux protein NRL00_06655 PF02687 FtsX-like permease family NRL00_06655 PF00005 ABC transporter NRL00_06655 PF12704 MacB-like periplasmic core domain NRL00_06660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_06670 PF01368 DHH family NRL00_06670 PF02833 DHHA2 domain NRL00_06675 PF02463 RecF/RecN/SMC N terminal domain NRL00_06680 PF01513 ATP-NAD kinase NRL00_06685 PF01025 GrpE NRL00_06690 PF00012 Hsp70 protein NRL00_06695 PF00684 DnaJ central domain NRL00_06695 PF00226 DnaJ domain NRL00_06695 PF01556 DnaJ C terminal domain NRL00_06700 PF11471 Maltoporin periplasmic N-terminal extension NRL00_06700 PF02264 LamB porin NRL00_06705 PF00294 pfkB family carbohydrate kinase NRL00_06710 PF00367 phosphotransferase system, EIIB NRL00_06710 PF02378 Phosphotransferase system, EIIC NRL00_06715 PF08244 Glycosyl hydrolases family 32 C terminal NRL00_06715 PF00251 Glycosyl hydrolases family 32 N-terminal domain NRL00_06720 PF00356 Bacterial regulatory proteins, lacI family NRL00_06720 PF13407 Periplasmic binding protein domain NRL00_06725 PF02308 MgtC family NRL00_06740 PF01022 Bacterial regulatory protein, arsR family NRL00_06745 PF04143 Sulphur transport NRL00_06760 PF00873 AcrB/AcrD/AcrF family NRL00_06765 PF03707 Bacterial signalling protein N terminal repeat NRL00_06765 PF00563 EAL domain NRL00_06765 PF00990 Diguanylate cyclase, GGDEF domain NRL00_06770 PF03099 Biotin/lipoate A/B protein ligase family NRL00_06770 PF10437 Bacterial lipoate protein ligase C-terminus NRL00_06785 PF00873 AcrB/AcrD/AcrF family NRL00_06790 PF00529 HlyD membrane-fusion protein of T1SS NRL00_06790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_06805 PF00873 AcrB/AcrD/AcrF family NRL00_06810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_06815 PF03372 Endonuclease/Exonuclease/phosphatase family NRL00_06830 PF00011 Hsp20/alpha crystallin family NRL00_06835 PF07690 Major Facilitator Superfamily NRL00_06840 PF02424 ApbE family NRL00_06845 PF00127 Copper binding proteins, plastocyanin/azurin family NRL00_06860 PF01156 Inosine-uridine preferring nucleoside hydrolase NRL00_06870 PF00034 Cytochrome c NRL00_06870 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL00_06880 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRL00_06880 PF06481 COX Aromatic Rich Motif NRL00_06885 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRL00_06890 PF00510 Cytochrome c oxidase subunit III NRL00_06895 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NRL00_06900 PF01040 UbiA prenyltransferase family NRL00_06905 PF07690 Major Facilitator Superfamily NRL00_06920 PF05656 Protein of unknown function (DUF805) NRL00_06930 PF07662 Na+ dependent nucleoside transporter C-terminus NRL00_06930 PF07670 Nucleoside recognition NRL00_06930 PF01773 Na+ dependent nucleoside transporter N-terminus NRL00_06950 PF13657 HipA N-terminal domain NRL00_06950 PF07804 HipA-like C-terminal domain NRL00_06955 PF01381 Helix-turn-helix NRL00_06960 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRL00_06995 PF00290 Tryptophan synthase alpha chain NRL00_07000 PF00291 Pyridoxal-phosphate dependent enzyme NRL00_07005 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NRL00_07005 PF00218 Indole-3-glycerol phosphate synthase NRL00_07010 PF02885 Glycosyl transferase family, helical bundle domain NRL00_07010 PF00591 Glycosyl transferase family, a/b domain NRL00_07015 PF00117 Glutamine amidotransferase class-I NRL00_07015 PF00591 Glycosyl transferase family, a/b domain NRL00_07015 PF02885 Glycosyl transferase family, helical bundle domain NRL00_07020 PF04715 Anthranilate synthase component I, N terminal region NRL00_07020 PF00425 chorismate binding enzyme NRL00_07025 PF02811 PHP domain NRL00_07030 PF01300 Telomere recombination NRL00_07035 PF02616 Segregation and condensation protein ScpA NRL00_07040 PF04079 Segregation and condensation complex subunit ScpB NRL00_07045 PF00849 RNA pseudouridylate synthase NRL00_07045 PF01479 S4 domain NRL00_07065 PF00440 Bacterial regulatory proteins, tetR family NRL00_07065 PF08361 MAATS-type transcriptional repressor, C-terminal region NRL00_07070 PF00529 HlyD membrane-fusion protein of T1SS NRL00_07070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_07075 PF00873 AcrB/AcrD/AcrF family NRL00_07080 PF02321 Outer membrane efflux protein NRL00_07085 PF16363 GDP-mannose 4,6 dehydratase NRL00_07090 PF04321 RmlD substrate binding domain NRL00_07095 PF00483 Nucleotidyl transferase NRL00_07100 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NRL00_07105 PF05523 WxcM-like, C-terminal NRL00_07110 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_07110 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NRL00_07115 PF01575 MaoC like domain NRL00_07120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRL00_07125 PF01943 Polysaccharide biosynthesis protein NRL00_07145 PF00535 Glycosyl transferase family 2 NRL00_07150 PF02397 Bacterial sugar transferase NRL00_07165 PF04337 Protein of unknown function, DUF480 NRL00_07170 PF00176 SNF2 family N-terminal domain NRL00_07170 PF00271 Helicase conserved C-terminal domain NRL00_07170 PF04434 SWIM zinc finger NRL00_07175 PF05472 DNA replication terminus site-binding protein (Ter protein) NRL00_07185 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NRL00_07190 PF00676 Dehydrogenase E1 component NRL00_07195 PF02780 Transketolase, C-terminal domain NRL00_07195 PF02779 Transketolase, pyrimidine binding domain NRL00_07200 PF02817 e3 binding domain NRL00_07200 PF00364 Biotin-requiring enzyme NRL00_07200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL00_07205 PF00313 'Cold-shock' DNA-binding domain NRL00_07230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_07235 PF00892 EamA-like transporter family NRL00_07240 PF08220 DeoR-like helix-turn-helix domain NRL00_07240 PF00455 DeoR C terminal sensor domain NRL00_07245 PF02901 Pyruvate formate lyase-like NRL00_07245 PF01228 Glycine radical NRL00_07250 PF04055 Radical SAM superfamily NRL00_07255 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRL00_07265 PF11871 Domain of unknown function (DUF3391) NRL00_07265 PF01966 HD domain NRL00_07270 PF00849 RNA pseudouridylate synthase NRL00_07270 PF01479 S4 domain NRL00_07280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_07285 PF12850 Calcineurin-like phosphoesterase superfamily domain NRL00_07300 PF13144 Chaperone for flagella basal body P-ring formation NRL00_07305 PF01584 CheW-like domain NRL00_07305 PF00072 Response regulator receiver domain NRL00_07310 PF01739 CheR methyltransferase, SAM binding domain NRL00_07310 PF03705 CheR methyltransferase, all-alpha domain NRL00_07315 PF00460 Flagella basal body rod protein NRL00_07320 PF00460 Flagella basal body rod protein NRL00_07320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_07330 PF07559 Flagellar basal body protein FlaE NRL00_07330 PF00460 Flagella basal body rod protein NRL00_07330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_07335 PF00460 Flagella basal body rod protein NRL00_07335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_07340 PF00460 Flagella basal body rod protein NRL00_07340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_07345 PF02107 Flagellar L-ring protein NRL00_07350 PF02119 Flagellar P-ring protein NRL00_07355 PF10135 Rod binding protein NRL00_07355 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NRL00_07360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_07360 PF00460 Flagella basal body rod protein NRL00_07365 PF00669 Bacterial flagellin N-terminal helical region NRL00_07370 PF03448 MgtE intracellular N domain NRL00_07370 PF00571 CBS domain NRL00_07370 PF01769 Divalent cation transporter NRL00_07375 PF02541 Ppx/GppA phosphatase family NRL00_07380 PF17941 Polyphosphate kinase C-terminal domain 1 NRL00_07380 PF02503 Polyphosphate kinase middle domain NRL00_07380 PF13090 Polyphosphate kinase C-terminal domain 2 NRL00_07380 PF13089 Polyphosphate kinase N-terminal domain NRL00_07385 PF01842 ACT domain NRL00_07395 PF00158 Sigma-54 interaction domain NRL00_07395 PF02954 Bacterial regulatory protein, Fis family NRL00_07395 PF06490 Flagellar regulatory protein FleQ NRL00_07400 PF00512 His Kinase A (phospho-acceptor) domain NRL00_07400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_07400 PF13188 PAS domain NRL00_07405 PF00158 Sigma-54 interaction domain NRL00_07405 PF00072 Response regulator receiver domain NRL00_07405 PF02954 Bacterial regulatory protein, Fis family NRL00_07410 PF01784 NIF3 (NGG1p interacting factor 3) NRL00_07415 PF00551 Formyl transferase NRL00_07420 PF00586 AIR synthase related protein, N-terminal domain NRL00_07420 PF02769 AIR synthase related protein, C-terminal domain NRL00_07435 PF00308 Bacterial dnaA protein NRL00_07440 PF00463 Isocitrate lyase family NRL00_07445 PF01274 Malate synthase NRL00_07460 PF14437 MafB19-like deaminase NRL00_07465 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_07470 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_07475 PF00005 ABC transporter NRL00_07480 PF01895 PhoU domain NRL00_07495 PF00571 CBS domain NRL00_07495 PF03471 Transporter associated domain NRL00_07495 PF01595 Cyclin M transmembrane N-terminal domain NRL00_07510 PF13520 Amino acid permease NRL00_07515 PF04116 Fatty acid hydroxylase superfamily NRL00_07530 PF00005 ABC transporter NRL00_07535 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_07540 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_07545 PF07690 Major Facilitator Superfamily NRL00_07550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_07550 PF07730 Histidine kinase NRL00_07550 PF05231 MASE1 NRL00_07555 PF00072 Response regulator receiver domain NRL00_07555 PF00196 Bacterial regulatory proteins, luxR family NRL00_07560 PF14760 Rnk N-terminus NRL00_07560 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL00_07575 PF00245 Alkaline phosphatase NRL00_07580 PF00245 Alkaline phosphatase NRL00_07585 PF01926 50S ribosome-binding GTPase NRL00_07590 PF07690 Major Facilitator Superfamily NRL00_07595 PF00850 Histone deacetylase domain NRL00_07605 PF13307 Helicase C-terminal domain NRL00_07605 PF06733 DEAD_2 NRL00_07610 PF13609 Gram-negative porin NRL00_07620 PF00155 Aminotransferase class I and II NRL00_07625 PF05872 Bacterial protein of unknown function (DUF853) NRL00_07640 PF03772 Competence protein NRL00_07640 PF00753 Metallo-beta-lactamase superfamily NRL00_07645 PF00664 ABC transporter transmembrane region NRL00_07645 PF00005 ABC transporter NRL00_07650 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NRL00_07655 PF03966 Trm112p-like protein NRL00_07660 PF02348 Cytidylyltransferase NRL00_07665 PF00196 Bacterial regulatory proteins, luxR family NRL00_07665 PF00072 Response regulator receiver domain NRL00_07670 PF01541 GIY-YIG catalytic domain NRL00_07670 PF02151 UvrB/uvrC motif NRL00_07670 PF08459 UvrC Helix-hairpin-helix N-terminal NRL00_07675 PF01066 CDP-alcohol phosphatidyltransferase NRL00_07700 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB NRL00_07705 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRL00_07715 PF00034 Cytochrome c NRL00_07720 PF13435 Cytochrome c554 and c-prime NRL00_07720 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRL00_07725 PF00037 4Fe-4S binding domain NRL00_07725 PF13247 4Fe-4S dicluster domain NRL00_07730 PF03916 Polysulphide reductase, NrfD NRL00_07735 PF00149 Calcineurin-like phosphoesterase NRL00_07745 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRL00_07750 PF09190 DALR domain NRL00_07750 PF01406 tRNA synthetases class I (C) catalytic domain NRL00_07755 PF14581 SseB protein C-terminal domain NRL00_07755 PF07179 SseB protein N-terminal domain NRL00_07765 PF00990 Diguanylate cyclase, GGDEF domain NRL00_07765 PF13185 GAF domain NRL00_07810 PF01169 Uncharacterized protein family UPF0016 NRL00_07815 PF01253 Translation initiation factor SUI1 NRL00_07825 PF07664 Ferrous iron transport protein B C terminus NRL00_07825 PF02421 Ferrous iron transport protein B NRL00_07825 PF07670 Nucleoside recognition NRL00_07840 PF00483 Nucleotidyl transferase NRL00_07845 PF00437 Type II/IV secretion system protein NRL00_07855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_07855 PF00989 PAS fold NRL00_07855 PF01627 Hpt domain NRL00_07855 PF00512 His Kinase A (phospho-acceptor) domain NRL00_07855 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_07855 PF00072 Response regulator receiver domain NRL00_07860 PF01032 FecCD transport family NRL00_07865 PF00005 ABC transporter NRL00_07870 PF00793 DAHP synthetase I family NRL00_07875 PF01219 Prokaryotic diacylglycerol kinase NRL00_07880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL00_07880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL00_07880 PF01842 ACT domain NRL00_07885 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NRL00_07890 PF01812 5-formyltetrahydrofolate cyclo-ligase family NRL00_07900 PF01113 Dihydrodipicolinate reductase, N-terminus NRL00_07900 PF05173 Dihydrodipicolinate reductase, C-terminus NRL00_07905 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NRL00_07905 PF00117 Glutamine amidotransferase class-I NRL00_07910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL00_07910 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NRL00_07910 PF02142 MGS-like domain NRL00_07915 PF08502 LeuA allosteric (dimerisation) domain NRL00_07915 PF00682 HMGL-like NRL00_07925 PF07759 Protein of unknown function (DUF1615) NRL00_07950 PF13302 Acetyltransferase (GNAT) domain NRL00_07955 PF00271 Helicase conserved C-terminal domain NRL00_07955 PF00270 DEAD/DEAH box helicase NRL00_07965 PF14521 Lysine-specific metallo-endopeptidase NRL00_07980 PF09278 MerR, DNA binding NRL00_07980 PF00376 MerR family regulatory protein NRL00_07995 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRL00_07995 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_08000 PF01493 GXGXG motif NRL00_08000 PF01645 Conserved region in glutamate synthase NRL00_08000 PF04898 Glutamate synthase central domain NRL00_08000 PF00310 Glutamine amidotransferases class-II NRL00_08005 PF04055 Radical SAM superfamily NRL00_08005 PF16199 Radical_SAM C-terminal domain NRL00_08010 PF03412 Peptidase C39 family NRL00_08010 PF00005 ABC transporter NRL00_08010 PF00664 ABC transporter transmembrane region NRL00_08055 PF00324 Amino acid permease NRL00_08065 PF03618 Kinase/pyrophosphorylase NRL00_08070 PF00391 PEP-utilising enzyme, mobile domain NRL00_08070 PF02896 PEP-utilising enzyme, TIM barrel domain NRL00_08070 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRL00_08080 PF14310 Fibronectin type III-like domain NRL00_08080 PF00933 Glycosyl hydrolase family 3 N terminal domain NRL00_08080 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRL00_08090 PF01483 Proprotein convertase P-domain NRL00_08090 PF00082 Subtilase family NRL00_08110 PF03180 NLPA lipoprotein NRL00_08115 PF01569 PAP2 superfamily NRL00_08120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL00_08120 PF11890 Domain of unknown function (DUF3410) NRL00_08120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL00_08125 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL00_08125 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL00_08135 PF01416 tRNA pseudouridine synthase NRL00_08140 PF01039 Carboxyl transferase domain NRL00_08140 PF17848 Acetyl-coA carboxylase zinc finger domain NRL00_08145 PF02875 Mur ligase family, glutamate ligase domain NRL00_08145 PF08245 Mur ligase middle domain NRL00_08150 PF05036 Sporulation related domain NRL00_08155 PF04358 DsrC like protein NRL00_08160 PF12805 FUSC-like inner membrane protein yccS NRL00_08165 PF01027 Inhibitor of apoptosis-promoting Bax1 NRL00_08180 PF03496 ADP-ribosyltransferase exoenzyme NRL00_08185 PF01312 FlhB HrpN YscU SpaS Family NRL00_08190 PF01311 Bacterial export proteins, family 1 NRL00_08195 PF01313 Bacterial export proteins, family 3 NRL00_08200 PF00813 FliP family NRL00_08205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRL00_08210 PF02120 Flagellar hook-length control protein FliK NRL00_08220 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRL00_08220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL00_08220 PF18269 T3SS EscN ATPase C-terminal domain NRL00_08225 PF07201 HrpJ-like domain NRL00_08230 PF09059 TyeA NRL00_08250 PF00771 FHIPEP family NRL00_08255 PF09621 Type III secretion system regulator (LcrR) NRL00_08265 PF04792 V antigen (LcrV) protein NRL00_08270 PF07720 Tetratricopeptide repeat NRL00_08275 PF04888 Secretion system effector C (SseC) like family NRL00_08280 PF05844 YopD protein NRL00_08285 PF05932 Tir chaperone protein (CesT) family NRL00_08300 PF12833 Helix-turn-helix domain NRL00_08305 PF16806 Antiactivator protein ExsD NRL00_08310 PF05932 Tir chaperone protein (CesT) family NRL00_08315 PF00263 Bacterial type II and III secretion system protein NRL00_08315 PF03958 Bacterial type II/III secretion system short domain NRL00_08320 PF16697 Inner membrane component of T3SS, cytoplasmic domain NRL00_08320 PF16693 Inner membrane component of T3SS, periplasmic domain NRL00_08330 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF NRL00_08335 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) NRL00_08340 PF09025 YopR, type III needle-polymerisation regulator NRL00_08345 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI NRL00_08350 PF01514 Secretory protein of YscJ/FliF family NRL00_08355 PF06578 YOP proteins translocation protein K (YscK) NRL00_08360 PF02108 Flagellar assembly protein FliH NRL00_08375 PF00884 Sulfatase NRL00_08375 PF08019 Phosphoethanolamine transferase EptA/EptB NRL00_08380 PF09924 Uncharacterised conserved protein (DUF2156) NRL00_08380 PF03706 Lysylphosphatidylglycerol synthase TM region NRL00_08390 PF08447 PAS fold NRL00_08390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_08395 PF00563 EAL domain NRL00_08395 PF00990 Diguanylate cyclase, GGDEF domain NRL00_08395 PF13426 PAS domain NRL00_08400 PF00849 RNA pseudouridylate synthase NRL00_08410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL00_08415 PF04209 homogentisate 1,2-dioxygenase NRL00_08425 PF14497 Glutathione S-transferase, C-terminal domain NRL00_08425 PF02798 Glutathione S-transferase, N-terminal domain NRL00_08445 PF00733 Asparagine synthase NRL00_08445 PF13537 Glutamine amidotransferase domain NRL00_08455 PF02254 TrkA-N domain NRL00_08455 PF00999 Sodium/hydrogen exchanger family NRL00_08460 PF13344 Haloacid dehalogenase-like hydrolase NRL00_08465 PF00962 Adenosine/AMP deaminase NRL00_08470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL00_08475 PF03741 Integral membrane protein TerC family NRL00_08475 PF03471 Transporter associated domain NRL00_08485 PF02913 FAD linked oxidases, C-terminal domain NRL00_08485 PF01565 FAD binding domain NRL00_08485 PF13183 4Fe-4S dicluster domain NRL00_08495 PF03061 Thioesterase superfamily NRL00_08500 PF03880 DbpA RNA binding domain NRL00_08500 PF00270 DEAD/DEAH box helicase NRL00_08500 PF00271 Helicase conserved C-terminal domain NRL00_08505 PF13726 Na+-H+ antiporter family NRL00_08505 PF03553 Na+/H+ antiporter family NRL00_08510 PF00929 Exonuclease NRL00_08515 PF00672 HAMP domain NRL00_08515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_08515 PF12729 Four helix bundle sensory module for signal transduction NRL00_08520 PF00691 OmpA family NRL00_08520 PF18393 MotY N-terminal domain NRL00_08525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL00_08530 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL00_08530 PF10576 Iron-sulfur binding domain of endonuclease III NRL00_08530 PF00633 Helix-hairpin-helix motif NRL00_08535 PF02508 Rnf-Nqr subunit, membrane protein NRL00_08540 PF04205 FMN-binding domain NRL00_08545 PF03116 NQR2, RnfD, RnfE family NRL00_08550 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRL00_08550 PF12838 4Fe-4S dicluster domain NRL00_08550 PF13375 RnfC Barrel sandwich hybrid domain NRL00_08550 PF10531 SLBB domain NRL00_08555 PF04060 Putative Fe-S cluster NRL00_08560 PF02508 Rnf-Nqr subunit, membrane protein NRL00_08565 PF00892 EamA-like transporter family NRL00_08570 PF13426 PAS domain NRL00_08570 PF08447 PAS fold NRL00_08570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_08580 PF07055 Enoyl reductase FAD binding domain NRL00_08580 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRL00_08580 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRL00_08585 PF03606 C4-dicarboxylate anaerobic carrier NRL00_08590 PF12795 Mechanosensitive ion channel porin domain NRL00_08590 PF00924 Mechanosensitive ion channel NRL00_08590 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL00_08595 PF00155 Aminotransferase class I and II NRL00_08605 PF00462 Glutaredoxin NRL00_08610 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NRL00_08615 PF00271 Helicase conserved C-terminal domain NRL00_08615 PF04851 Type III restriction enzyme, res subunit NRL00_08620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_08620 PF00529 HlyD membrane-fusion protein of T1SS NRL00_08625 PF11742 Protein of unknown function (DUF3302) NRL00_08630 PF02554 Carbon starvation protein CstA NRL00_08635 PF04397 LytTr DNA-binding domain NRL00_08635 PF00072 Response regulator receiver domain NRL00_08640 PF07694 5TMR of 5TMR-LYT NRL00_08640 PF06580 Histidine kinase NRL00_08645 PF01966 HD domain NRL00_08650 PF00171 Aldehyde dehydrogenase family NRL00_08650 PF00465 Iron-containing alcohol dehydrogenase NRL00_08660 PF01914 MarC family integral membrane protein NRL00_08665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_08670 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_08675 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_08675 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL00_08680 PF00005 ABC transporter NRL00_08680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_08685 PF00005 ABC transporter NRL00_08685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_08690 PF03741 Integral membrane protein TerC family NRL00_08695 PF00842 Alanine racemase, C-terminal domain NRL00_08695 PF01168 Alanine racemase, N-terminal domain NRL00_08705 PF00375 Sodium:dicarboxylate symporter family NRL00_08720 PF01979 Amidohydrolase family NRL00_08730 PF00672 HAMP domain NRL00_08730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_08730 PF17200 Single Cache domain 2 NRL00_08735 PF01230 HIT domain NRL00_08770 PF07549 SecD/SecF GG Motif NRL00_08770 PF02355 Protein export membrane protein NRL00_08770 PF13721 SecD export protein N-terminal TM region NRL00_08775 PF07549 SecD/SecF GG Motif NRL00_08775 PF02355 Protein export membrane protein NRL00_08780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_08780 PF08447 PAS fold NRL00_08780 PF13426 PAS domain NRL00_08790 PF05661 Protein of unknown function (DUF808) NRL00_08795 PF08439 Oligopeptidase F NRL00_08795 PF01432 Peptidase family M3 NRL00_08800 PF01432 Peptidase family M3 NRL00_08800 PF08439 Oligopeptidase F NRL00_08805 PF00860 Permease family NRL00_08810 PF05728 Uncharacterised protein family (UPF0227) NRL00_08815 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_08835 PF01906 Putative heavy-metal-binding NRL00_08850 PF00884 Sulfatase NRL00_08860 PF00696 Amino acid kinase family NRL00_08860 PF01842 ACT domain NRL00_08865 PF00696 Amino acid kinase family NRL00_08865 PF00583 Acetyltransferase (GNAT) family NRL00_08870 PF01625 Peptide methionine sulfoxide reductase NRL00_08890 PF00561 alpha/beta hydrolase fold NRL00_08895 PF03466 LysR substrate binding domain NRL00_08895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_08900 PF02652 L-lactate permease NRL00_08905 PF02754 Cysteine-rich domain NRL00_08910 PF02589 LUD domain NRL00_08910 PF13183 4Fe-4S dicluster domain NRL00_08910 PF11870 Domain of unknown function (DUF3390) NRL00_08915 PF02589 LUD domain NRL00_08920 PF02913 FAD linked oxidases, C-terminal domain NRL00_08920 PF01565 FAD binding domain NRL00_08950 PF12704 MacB-like periplasmic core domain NRL00_08950 PF02687 FtsX-like permease family NRL00_08955 PF00005 ABC transporter NRL00_08965 PF03600 Citrate transporter NRL00_08975 PF07690 Major Facilitator Superfamily NRL00_08990 PF01593 Flavin containing amine oxidoreductase NRL00_08995 PF03239 Iron permease FTR1 family NRL00_09020 PF13533 Biotin-lipoyl like NRL00_09035 PF00916 Sulfate permease family NRL00_09035 PF01740 STAS domain NRL00_09045 PF01168 Alanine racemase, N-terminal domain NRL00_09045 PF00842 Alanine racemase, C-terminal domain NRL00_09050 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal NRL00_09050 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRL00_09055 PF13247 4Fe-4S dicluster domain NRL00_09060 PF03916 Polysulphide reductase, NrfD NRL00_09065 PF00374 Nickel-dependent hydrogenase NRL00_09070 PF01750 Hydrogenase maturation protease NRL00_09075 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE NRL00_09080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_09085 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_09090 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL00_09090 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_09095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_09095 PF00005 ABC transporter NRL00_09100 PF00005 ABC transporter NRL00_09105 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRL00_09115 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRL00_09120 PF02769 AIR synthase related protein, C-terminal domain NRL00_09120 PF00586 AIR synthase related protein, N-terminal domain NRL00_09125 PF01924 Hydrogenase formation hypA family NRL00_09130 PF01455 HupF/HypC family NRL00_09135 PF17788 HypF Kae1-like domain NRL00_09135 PF00708 Acylphosphatase NRL00_09135 PF07503 HypF finger NRL00_09135 PF01300 Telomere recombination NRL00_09140 PF09106 Elongation factor SelB, winged helix NRL00_09140 PF00009 Elongation factor Tu GTP binding domain NRL00_09140 PF03144 Elongation factor Tu domain 2 NRL00_09140 PF09105 Elongation factor SelB, winged helix NRL00_09140 PF09107 Elongation factor SelB, winged helix NRL00_09145 PF12390 Selenocysteine synthase N terminal NRL00_09145 PF03841 L-seryl-tRNA selenium transferase NRL00_09155 PF01750 Hydrogenase maturation protease NRL00_09160 PF07450 Formate hydrogenlyase maturation protein HycH NRL00_09165 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRL00_09170 PF12838 4Fe-4S dicluster domain NRL00_09175 PF00374 Nickel-dependent hydrogenase NRL00_09175 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRL00_09175 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRL00_09180 PF00146 NADH dehydrogenase NRL00_09185 PF00361 Proton-conducting membrane transporter NRL00_09190 PF00037 4Fe-4S binding domain NRL00_09190 PF12798 4Fe-4S binding domain NRL00_09195 PF02705 K+ potassium transporter NRL00_09205 PF13247 4Fe-4S dicluster domain NRL00_09205 PF12800 4Fe-4S binding domain NRL00_09220 PF01590 GAF domain NRL00_09220 PF02954 Bacterial regulatory protein, Fis family NRL00_09220 PF00158 Sigma-54 interaction domain NRL00_09225 PF02634 FdhD/NarQ family NRL00_09230 PF13662 Toprim domain NRL00_09230 PF02132 RecR protein NRL00_09235 PF00183 Hsp90 protein NRL00_09235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_09240 PF05191 Adenylate kinase, active site lid NRL00_09245 PF00762 Ferrochelatase NRL00_09250 PF01124 MAPEG family NRL00_09255 PF00294 pfkB family carbohydrate kinase NRL00_09270 PF00563 EAL domain NRL00_09270 PF03707 Bacterial signalling protein N terminal repeat NRL00_09270 PF00990 Diguanylate cyclase, GGDEF domain NRL00_09275 PF00483 Nucleotidyl transferase NRL00_09285 PF07273 Protein of unknown function (DUF1439) NRL00_09295 PF00425 chorismate binding enzyme NRL00_09300 PF13193 AMP-binding enzyme C-terminal domain NRL00_09300 PF00501 AMP-binding enzyme NRL00_09305 PF00550 Phosphopantetheine attachment site NRL00_09305 PF00857 Isochorismatase family NRL00_09310 PF00501 AMP-binding enzyme NRL00_09310 PF13193 AMP-binding enzyme C-terminal domain NRL00_09310 PF00668 Condensation domain NRL00_09310 PF00550 Phosphopantetheine attachment site NRL00_09310 PF00975 Thioesterase domain NRL00_09320 PF00501 AMP-binding enzyme NRL00_09320 PF00668 Condensation domain NRL00_09320 PF13193 AMP-binding enzyme C-terminal domain NRL00_09320 PF07993 Male sterility protein NRL00_09320 PF00550 Phosphopantetheine attachment site NRL00_09325 PF14765 Polyketide synthase dehydratase NRL00_09325 PF00550 Phosphopantetheine attachment site NRL00_09325 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL00_09325 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL00_09325 PF16197 Ketoacyl-synthetase C-terminal extension NRL00_09325 PF00668 Condensation domain NRL00_09325 PF13193 AMP-binding enzyme C-terminal domain NRL00_09325 PF00501 AMP-binding enzyme NRL00_09325 PF08659 KR domain NRL00_09330 PF01497 Periplasmic binding protein NRL00_09335 PF01648 4'-phosphopantetheinyl transferase superfamily NRL00_09335 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NRL00_09340 PF00005 ABC transporter NRL00_09345 PF01032 FecCD transport family NRL00_09350 PF01032 FecCD transport family NRL00_09355 PF00593 TonB dependent receptor NRL00_09355 PF07715 TonB-dependent Receptor Plug Domain NRL00_09370 PF11143 Protein of unknown function (DUF2919) NRL00_09375 PF01544 CorA-like Mg2+ transporter protein NRL00_09385 PF01012 Electron transfer flavoprotein domain NRL00_09390 PF01012 Electron transfer flavoprotein domain NRL00_09390 PF00766 Electron transfer flavoprotein FAD-binding domain NRL00_09395 PF00266 Aminotransferase class-V NRL00_09400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRL00_09405 PF00793 DAHP synthetase I family NRL00_09410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_09410 PF00672 HAMP domain NRL00_09415 PF04055 Radical SAM superfamily NRL00_09420 PF02601 Exonuclease VII, large subunit NRL00_09420 PF13742 OB-fold nucleic acid binding domain NRL00_09430 PF02472 Biopolymer transport protein ExbD/TolR NRL00_09435 PF01618 MotA/TolQ/ExbB proton channel family NRL00_09445 PF02705 K+ potassium transporter NRL00_09450 PF00478 IMP dehydrogenase / GMP reductase domain NRL00_09450 PF00571 CBS domain NRL00_09455 PF02540 NAD synthase NRL00_09455 PF00958 GMP synthase C terminal domain NRL00_09455 PF00117 Glutamine amidotransferase class-I NRL00_09475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRL00_09475 PF12833 Helix-turn-helix domain NRL00_09475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRL00_09475 PF02805 Metal binding domain of Ada NRL00_09490 PF05724 Thiopurine S-methyltransferase (TPMT) NRL00_09495 PF05193 Peptidase M16 inactive domain NRL00_09495 PF00675 Insulinase (Peptidase family M16) NRL00_09500 PF00300 Histidine phosphatase superfamily (branch 1) NRL00_09510 PF00892 EamA-like transporter family NRL00_09515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_09520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NRL00_09525 PF02559 CarD-like/TRCF domain NRL00_09525 PF00271 Helicase conserved C-terminal domain NRL00_09525 PF17757 UvrB interaction domain NRL00_09525 PF03461 TRCF domain NRL00_09525 PF00270 DEAD/DEAH box helicase NRL00_09535 PF12704 MacB-like periplasmic core domain NRL00_09535 PF02687 FtsX-like permease family NRL00_09540 PF00005 ABC transporter NRL00_09545 PF12704 MacB-like periplasmic core domain NRL00_09545 PF02687 FtsX-like permease family NRL00_09560 PF05698 Bacterial trigger factor protein (TF) C-terminus NRL00_09560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL00_09560 PF05697 Bacterial trigger factor protein (TF) NRL00_09565 PF00574 Clp protease NRL00_09570 PF07724 AAA domain (Cdc48 subfamily) NRL00_09570 PF10431 C-terminal, D2-small domain, of ClpB protein NRL00_09570 PF06689 ClpX C4-type zinc finger NRL00_09575 PF00004 ATPase family associated with various cellular activities (AAA) NRL00_09575 PF05362 Lon protease (S16) C-terminal proteolytic domain NRL00_09575 PF02190 ATP-dependent protease La (LON) substrate-binding domain NRL00_09580 PF00216 Bacterial DNA-binding protein NRL00_09590 PF00005 ABC transporter NRL00_09590 PF12848 ABC transporter NRL00_09595 PF00474 Sodium:solute symporter family NRL00_09600 PF04341 Protein of unknown function, DUF485 NRL00_09615 PF00378 Enoyl-CoA hydratase/isomerase NRL00_09660 PF01235 Sodium:alanine symporter family NRL00_09670 PF06167 Glucose-regulated metallo-peptidase M90 NRL00_09675 PF01184 GPR1/FUN34/yaaH family NRL00_09690 PF09278 MerR, DNA binding NRL00_09690 PF00376 MerR family regulatory protein NRL00_09695 PF00682 HMGL-like NRL00_09700 PF02785 Biotin carboxylase C-terminal domain NRL00_09700 PF00289 Biotin carboxylase, N-terminal domain NRL00_09700 PF00364 Biotin-requiring enzyme NRL00_09700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL00_09705 PF00378 Enoyl-CoA hydratase/isomerase NRL00_09710 PF01039 Carboxyl transferase domain NRL00_09715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL00_09715 PF02770 Acyl-CoA dehydrogenase, middle domain NRL00_09715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL00_09720 PF00171 Aldehyde dehydrogenase family NRL00_09725 PF02770 Acyl-CoA dehydrogenase, middle domain NRL00_09725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL00_09725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL00_09730 PF00378 Enoyl-CoA hydratase/isomerase NRL00_09735 PF00378 Enoyl-CoA hydratase/isomerase NRL00_09740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRL00_09740 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRL00_09750 PF13520 Amino acid permease NRL00_09755 PF01925 Sulfite exporter TauE/SafE NRL00_09765 PF03466 LysR substrate binding domain NRL00_09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_09770 PF12146 Serine aminopeptidase, S33 NRL00_09775 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NRL00_09775 PF07676 WD40-like Beta Propeller Repeat NRL00_09775 PF00326 Prolyl oligopeptidase family NRL00_09785 PF03466 LysR substrate binding domain NRL00_09785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_09790 PF00248 Aldo/keto reductase family NRL00_09795 PF12706 Beta-lactamase superfamily domain NRL00_09800 PF00072 Response regulator receiver domain NRL00_09800 PF01627 Hpt domain NRL00_09800 PF00512 His Kinase A (phospho-acceptor) domain NRL00_09800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_09800 PF00672 HAMP domain NRL00_09800 PF17149 Periplasmic sensor domain found in signal transduction proteins NRL00_09830 PF00072 Response regulator receiver domain NRL00_09830 PF00211 Adenylate and Guanylate cyclase catalytic domain NRL00_09835 PF00534 Glycosyl transferases group 1 NRL00_09840 PF02397 Bacterial sugar transferase NRL00_09850 PF00534 Glycosyl transferases group 1 NRL00_09850 PF13439 Glycosyltransferase Family 4 NRL00_09915 PF00534 Glycosyl transferases group 1 NRL00_09920 PF00534 Glycosyl transferases group 1 NRL00_09920 PF00862 Sucrose synthase NRL00_09925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_09925 PF03466 LysR substrate binding domain NRL00_09930 PF00232 Glycosyl hydrolase family 1 NRL00_09935 PF01966 HD domain NRL00_09945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_09945 PF03466 LysR substrate binding domain NRL00_09950 PF01261 Xylose isomerase-like TIM barrel NRL00_09955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRL00_09955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL00_09960 PF03466 LysR substrate binding domain NRL00_09960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_09970 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL00_09975 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL00_09990 PF00990 Diguanylate cyclase, GGDEF domain NRL00_10000 PF03104 DNA polymerase family B, exonuclease domain NRL00_10000 PF00136 DNA polymerase family B NRL00_10030 PF01554 MatE NRL00_10035 PF06786 Uncharacterised protein family (UPF0253) NRL00_10040 PF00677 Lumazine binding domain NRL00_10050 PF13419 Haloacid dehalogenase-like hydrolase NRL00_10055 PF02222 ATP-grasp domain NRL00_10055 PF01370 NAD dependent epimerase/dehydratase family NRL00_10060 PF00892 EamA-like transporter family NRL00_10065 PF02525 Flavodoxin-like fold NRL00_10090 PF13509 S1 domain NRL00_10090 PF17783 CvfB-like winged helix domain NRL00_10100 PF04269 Protein of unknown function, DUF440 NRL00_10110 PF00912 Transglycosylase NRL00_10115 PF04269 Protein of unknown function, DUF440 NRL00_10120 PF03776 Septum formation topological specificity factor MinE NRL00_10125 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NRL00_10130 PF03775 Septum formation inhibitor MinC, C-terminal domain NRL00_10130 PF05209 Septum formation inhibitor MinC, N-terminal domain NRL00_10135 PF05166 YcgL domain NRL00_10140 PF13406 Transglycosylase SLT domain NRL00_10145 PF03313 Serine dehydratase alpha chain NRL00_10145 PF03315 Serine dehydratase beta chain NRL00_10150 PF03313 Serine dehydratase alpha chain NRL00_10150 PF03315 Serine dehydratase beta chain NRL00_10155 PF06865 Pyrimidine/purine nucleoside phosphorylase NRL00_10160 PF00375 Sodium:dicarboxylate symporter family NRL00_10165 PF00376 MerR family regulatory protein NRL00_10165 PF09278 MerR, DNA binding NRL00_10170 PF02803 Thiolase, C-terminal domain NRL00_10170 PF00108 Thiolase, N-terminal domain NRL00_10175 PF08668 HDOD domain NRL00_10175 PF00563 EAL domain NRL00_10180 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRL00_10185 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRL00_10195 PF08281 Sigma-70, region 4 NRL00_10195 PF04542 Sigma-70 region 2 NRL00_10220 PF01882 Protein of unknown function DUF58 NRL00_10225 PF07726 ATPase family associated with various cellular activities (AAA) NRL00_10225 PF17863 AAA lid domain NRL00_10230 PF00108 Thiolase, N-terminal domain NRL00_10230 PF02803 Thiolase, C-terminal domain NRL00_10235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRL00_10235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRL00_10235 PF00378 Enoyl-CoA hydratase/isomerase NRL00_10245 PF07152 YaeQ protein NRL00_10255 PF06074 Protein of unknown function (DUF935) NRL00_10290 PF13188 PAS domain NRL00_10290 PF00158 Sigma-54 interaction domain NRL00_10290 PF02954 Bacterial regulatory protein, Fis family NRL00_10295 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL00_10295 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL00_10300 PF00291 Pyridoxal-phosphate dependent enzyme NRL00_10305 PF07687 Peptidase dimerisation domain NRL00_10305 PF01546 Peptidase family M20/M25/M40 NRL00_10310 PF01979 Amidohydrolase family NRL00_10315 PF00696 Amino acid kinase family NRL00_10320 PF00892 EamA-like transporter family NRL00_10325 PF02625 XdhC and CoxI family NRL00_10325 PF13478 XdhC Rossmann domain NRL00_10335 PF12804 MobA-like NTP transferase domain NRL00_10340 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_10340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRL00_10345 PF01979 Amidohydrolase family NRL00_10350 PF00941 FAD binding domain in molybdopterin dehydrogenase NRL00_10355 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRL00_10355 PF01799 [2Fe-2S] binding domain NRL00_10355 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRL00_10360 PF00860 Permease family NRL00_10365 PF01979 Amidohydrolase family NRL00_10370 PF00860 Permease family NRL00_10375 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRL00_10375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRL00_10380 PF00941 FAD binding domain in molybdopterin dehydrogenase NRL00_10380 PF03450 CO dehydrogenase flavoprotein C-terminal domain NRL00_10385 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL00_10385 PF01799 [2Fe-2S] binding domain NRL00_10395 PF05433 Glycine zipper 2TM domain NRL00_10405 PF03606 C4-dicarboxylate anaerobic carrier NRL00_10410 PF00501 AMP-binding enzyme NRL00_10410 PF13193 AMP-binding enzyme C-terminal domain NRL00_10420 PF01502 Phosphoribosyl-AMP cyclohydrolase NRL00_10420 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NRL00_10425 PF00977 Histidine biosynthesis protein NRL00_10430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_10430 PF00512 His Kinase A (phospho-acceptor) domain NRL00_10430 PF01627 Hpt domain NRL00_10430 PF00072 Response regulator receiver domain NRL00_10435 PF00990 Diguanylate cyclase, GGDEF domain NRL00_10435 PF08448 PAS fold NRL00_10440 PF00072 Response regulator receiver domain NRL00_10445 PF00977 Histidine biosynthesis protein NRL00_10450 PF00117 Glutamine amidotransferase class-I NRL00_10455 PF08645 Polynucleotide kinase 3 phosphatase NRL00_10455 PF00475 Imidazoleglycerol-phosphate dehydratase NRL00_10460 PF00155 Aminotransferase class I and II NRL00_10465 PF00815 Histidinol dehydrogenase NRL00_10470 PF01634 ATP phosphoribosyltransferase NRL00_10470 PF08029 HisG, C-terminal domain NRL00_10480 PF13307 Helicase C-terminal domain NRL00_10480 PF04851 Type III restriction enzyme, res subunit NRL00_10485 PF00814 Glycoprotease family NRL00_10495 PF00561 alpha/beta hydrolase fold NRL00_10500 PF00501 AMP-binding enzyme NRL00_10500 PF13193 AMP-binding enzyme C-terminal domain NRL00_10505 PF01612 3'-5' exonuclease NRL00_10505 PF00570 HRDC domain NRL00_10510 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_10520 PF01207 Dihydrouridine synthase (Dus) NRL00_10525 PF04304 Protein of unknown function (DUF454) NRL00_10530 PF00156 Phosphoribosyl transferase domain NRL00_10535 PF12169 DNA polymerase III subunits gamma and tau domain III NRL00_10535 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NRL00_10535 PF12170 DNA polymerase III tau subunit V interacting with alpha NRL00_10540 PF02575 YbaB/EbfC DNA-binding family NRL00_10565 PF00141 Peroxidase NRL00_10575 PF07670 Nucleoside recognition NRL00_10580 PF00196 Bacterial regulatory proteins, luxR family NRL00_10580 PF00072 Response regulator receiver domain NRL00_10585 PF00571 CBS domain NRL00_10585 PF01368 DHH family NRL00_10585 PF02272 DHHA1 domain NRL00_10585 PF01743 Poly A polymerase head domain NRL00_10590 PF00270 DEAD/DEAH box helicase NRL00_10590 PF11898 Domain of unknown function (DUF3418) NRL00_10590 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NRL00_10590 PF00271 Helicase conserved C-terminal domain NRL00_10590 PF04408 Helicase associated domain (HA2) NRL00_10600 PF01386 Ribosomal L25p family NRL00_10605 PF00072 Response regulator receiver domain NRL00_10605 PF01627 Hpt domain NRL00_10605 PF00512 His Kinase A (phospho-acceptor) domain NRL00_10605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_10605 PF00672 HAMP domain NRL00_10605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL00_10610 PF00072 Response regulator receiver domain NRL00_10615 PF00753 Metallo-beta-lactamase superfamily NRL00_10625 PF02769 AIR synthase related protein, C-terminal domain NRL00_10625 PF00586 AIR synthase related protein, N-terminal domain NRL00_10640 PF17785 PUA-like domain NRL00_10640 PF10672 S-adenosylmethionine-dependent methyltransferase NRL00_10645 PF12729 Four helix bundle sensory module for signal transduction NRL00_10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_10645 PF00672 HAMP domain NRL00_10650 PF00708 Acylphosphatase NRL00_10655 PF00043 Glutathione S-transferase, C-terminal domain NRL00_10655 PF02798 Glutathione S-transferase, N-terminal domain NRL00_10660 PF08264 Anticodon-binding domain of tRNA NRL00_10660 PF01588 Putative tRNA binding domain NRL00_10660 PF09334 tRNA synthetases class I (M) NRL00_10665 PF10609 NUBPL iron-transfer P-loop NTPase NRL00_10670 PF00485 Phosphoribulokinase / Uridine kinase family NRL00_10675 PF00692 dUTPase NRL00_10680 PF01384 Phosphate transporter family NRL00_10685 PF12111 Polyribonucleotide phosphorylase C terminal NRL00_10685 PF10150 Ribonuclease E/G family NRL00_10685 PF00575 S1 RNA binding domain NRL00_10690 PF01479 S4 domain NRL00_10690 PF00849 RNA pseudouridylate synthase NRL00_10695 PF13419 Haloacid dehalogenase-like hydrolase NRL00_10700 PF02545 Maf-like protein NRL00_10705 PF07690 Major Facilitator Superfamily NRL00_10710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_10710 PF03466 LysR substrate binding domain NRL00_10720 PF02620 Large ribosomal RNA subunit accumulation protein YceD NRL00_10725 PF01783 Ribosomal L32p protein family NRL00_10730 PF02504 Fatty acid synthesis protein NRL00_10735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRL00_10735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRL00_10740 PF00698 Acyl transferase domain NRL00_10750 PF00550 Phosphopantetheine attachment site NRL00_10755 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL00_10755 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL00_10760 PF01063 Amino-transferase class IV NRL00_10765 PF02618 YceG-like family NRL00_10770 PF02223 Thymidylate kinase NRL00_10775 PF09115 DNA polymerase III, delta subunit, C terminal NRL00_10780 PF01026 TatD related DNase NRL00_10785 PF00589 Phage integrase family NRL00_10795 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NRL00_10795 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NRL00_10795 PF01189 16S rRNA methyltransferase RsmB/F NRL00_10800 PF02470 MlaD protein NRL00_10805 PF04403 Paraquat-inducible protein A NRL00_10820 PF00285 Citrate synthase, C-terminal domain NRL00_10825 PF03972 MmgE/PrpD family NRL00_10840 PF06974 Protein of unknown function (DUF1298) NRL00_10840 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NRL00_10865 PF00106 short chain dehydrogenase NRL00_10875 PF07130 YebG protein NRL00_10895 PF05707 Zonular occludens toxin (Zot) NRL00_10900 PF10734 Protein of unknown function (DUF2523) NRL00_10935 PF13654 AAA domain NRL00_10935 PF05362 Lon protease (S16) C-terminal proteolytic domain NRL00_10940 PF07977 FabA-like domain NRL00_10945 PF04957 Ribosome modulation factor NRL00_10955 PF12848 ABC transporter NRL00_10955 PF00005 ABC transporter NRL00_10955 PF16326 ABC transporter C-terminal domain NRL00_10965 PF01170 Putative RNA methylase family UPF0020 NRL00_10965 PF02926 THUMP domain NRL00_10965 PF10672 S-adenosylmethionine-dependent methyltransferase NRL00_10970 PF07126 Cell-division protein ZapC NRL00_10975 PF01180 Dihydroorotate dehydrogenase NRL00_10980 PF05088 Bacterial NAD-glutamate dehydrogenase NRL00_10990 PF11940 Domain of unknown function (DUF3458) Ig-like fold NRL00_10990 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NRL00_10990 PF01433 Peptidase family M1 domain NRL00_10995 PF11818 C-terminal domain of tail specific protease (DUF3340) NRL00_10995 PF00595 PDZ domain NRL00_10995 PF03572 Peptidase family S41 NRL00_10995 PF17804 Tail specific protease N-terminal domain NRL00_11000 PF04352 ProQ/FINO family NRL00_11000 PF17516 ProQ C-terminal domain NRL00_11005 PF13185 GAF domain NRL00_11015 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRL00_11030 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NRL00_11030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL00_11040 PF00403 Heavy-metal-associated domain NRL00_11055 PF13545 Crp-like helix-turn-helix domain NRL00_11055 PF00027 Cyclic nucleotide-binding domain NRL00_11060 PF00582 Universal stress protein family NRL00_11065 PF01171 PP-loop family NRL00_11080 PF13417 Glutathione S-transferase, N-terminal domain NRL00_11085 PF05025 RbsD / FucU transport protein family NRL00_11090 PF00005 ABC transporter NRL00_11095 PF02653 Branched-chain amino acid transport system / permease component NRL00_11100 PF13407 Periplasmic binding protein domain NRL00_11105 PF00294 pfkB family carbohydrate kinase NRL00_11110 PF00356 Bacterial regulatory proteins, lacI family NRL00_11115 PF00563 EAL domain NRL00_11115 PF00990 Diguanylate cyclase, GGDEF domain NRL00_11115 PF03707 Bacterial signalling protein N terminal repeat NRL00_11140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_11140 PF00512 His Kinase A (phospho-acceptor) domain NRL00_11140 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL00_11140 PF00072 Response regulator receiver domain NRL00_11145 PF00216 Bacterial DNA-binding protein NRL00_11150 PF03483 B3/4 domain NRL00_11150 PF03484 tRNA synthetase B5 domain NRL00_11150 PF03147 Ferredoxin-fold anticodon binding domain NRL00_11150 PF01588 Putative tRNA binding domain NRL00_11150 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NRL00_11155 PF01409 tRNA synthetases class II core domain (F) NRL00_11155 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NRL00_11160 PF00453 Ribosomal protein L20 NRL00_11165 PF01632 Ribosomal protein L35 NRL00_11170 PF00707 Translation initiation factor IF-3, C-terminal domain NRL00_11170 PF05198 Translation initiation factor IF-3, N-terminal domain NRL00_11175 PF03129 Anticodon binding domain NRL00_11175 PF02824 TGS domain NRL00_11175 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL00_11175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRL00_11185 PF04055 Radical SAM superfamily NRL00_11195 PF03989 DNA gyrase C-terminal domain, beta-propeller NRL00_11195 PF00521 DNA gyrase/topoisomerase IV, subunit A NRL00_11205 PF13419 Haloacid dehalogenase-like hydrolase NRL00_11210 PF02867 Ribonucleotide reductase, barrel domain NRL00_11210 PF00317 Ribonucleotide reductase, all-alpha domain NRL00_11210 PF03477 ATP cone domain NRL00_11215 PF00268 Ribonucleotide reductase, small chain NRL00_11220 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL00_11225 PF06725 3D domain NRL00_11225 PF03562 MltA specific insert domain NRL00_11230 PF06945 Protein of unknown function (DUF1289) NRL00_11235 PF02378 Phosphotransferase system, EIIC NRL00_11235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL00_11240 PF00294 pfkB family carbohydrate kinase NRL00_11245 PF00381 PTS HPr component phosphorylation site NRL00_11245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL00_11250 PF00356 Bacterial regulatory proteins, lacI family NRL00_11250 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL00_11255 PF03222 Tryptophan/tyrosine permease family NRL00_11265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_11270 PF00270 DEAD/DEAH box helicase NRL00_11270 PF00271 Helicase conserved C-terminal domain NRL00_11280 PF01264 Chorismate synthase NRL00_11285 PF05175 Methyltransferase small domain NRL00_11290 PF01713 Smr domain NRL00_11300 PF00990 Diguanylate cyclase, GGDEF domain NRL00_11300 PF08448 PAS fold NRL00_11305 PF00300 Histidine phosphatase superfamily (branch 1) NRL00_11320 PF08329 Chitinase A, N-terminal domain NRL00_11320 PF00704 Glycosyl hydrolases family 18 NRL00_11330 PF03831 PhnA domain NRL00_11330 PF08274 PhnA Zinc-Ribbon NRL00_11335 PF02567 Phenazine biosynthesis-like protein NRL00_11360 PF01327 Polypeptide deformylase NRL00_11385 PF03330 Lytic transglycolase NRL00_11390 PF04310 MukB N-terminal NRL00_11390 PF16330 MukB hinge domain NRL00_11395 PF04288 MukE-like family NRL00_11400 PF03882 MukF winged-helix domain NRL00_11400 PF17193 MukF C-terminal domain NRL00_11400 PF17192 MukF middle domain NRL00_11405 PF13847 Methyltransferase domain NRL00_11410 PF02698 DUF218 domain NRL00_11415 PF00121 Triosephosphate isomerase NRL00_11420 PF00365 Phosphofructokinase NRL00_11425 PF07687 Peptidase dimerisation domain NRL00_11425 PF01546 Peptidase family M20/M25/M40 NRL00_11430 PF13419 Haloacid dehalogenase-like hydrolase NRL00_11435 PF00883 Cytosol aminopeptidase family, catalytic domain NRL00_11435 PF02789 Cytosol aminopeptidase family, N-terminal domain NRL00_11460 PF00128 Alpha amylase, catalytic domain NRL00_11460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL00_11470 PF11398 Protein of unknown function (DUF2813) NRL00_11480 PF14525 AraC-binding-like domain NRL00_11480 PF12833 Helix-turn-helix domain NRL00_11490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_11490 PF03466 LysR substrate binding domain NRL00_11495 PF01925 Sulfite exporter TauE/SafE NRL00_11500 PF03942 DTW domain NRL00_11505 PF18029 Glyoxalase-like domain NRL00_11505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL00_11510 PF01820 D-ala D-ala ligase N-terminus NRL00_11510 PF07478 D-ala D-ala ligase C-terminus NRL00_11520 PF00255 Glutathione peroxidase NRL00_11525 PF00271 Helicase conserved C-terminal domain NRL00_11525 PF00270 DEAD/DEAH box helicase NRL00_11530 PF13673 Acetyltransferase (GNAT) domain NRL00_11545 PF01928 CYTH domain NRL00_11560 PF00583 Acetyltransferase (GNAT) family NRL00_11565 PF00465 Iron-containing alcohol dehydrogenase NRL00_11570 PF03992 Antibiotic biosynthesis monooxygenase NRL00_11575 PF08543 Phosphomethylpyrimidine kinase NRL00_11595 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NRL00_11595 PF00561 alpha/beta hydrolase fold NRL00_11600 PF01575 MaoC like domain NRL00_11620 PF00005 ABC transporter NRL00_11620 PF00664 ABC transporter transmembrane region NRL00_11625 PF00664 ABC transporter transmembrane region NRL00_11625 PF00005 ABC transporter NRL00_11630 PF00672 HAMP domain NRL00_11630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_11630 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRL00_11630 PF00512 His Kinase A (phospho-acceptor) domain NRL00_11630 PF01627 Hpt domain NRL00_11630 PF00072 Response regulator receiver domain NRL00_11635 PF00085 Thioredoxin NRL00_11640 PF00939 Sodium:sulfate symporter transmembrane region NRL00_11645 PF00343 Carbohydrate phosphorylase NRL00_11665 PF04715 Anthranilate synthase component I, N terminal region NRL00_11665 PF00425 chorismate binding enzyme NRL00_11670 PF00293 NUDIX domain NRL00_11675 PF03222 Tryptophan/tyrosine permease family NRL00_11680 PF00375 Sodium:dicarboxylate symporter family NRL00_11685 PF16124 RecQ zinc-binding NRL00_11685 PF00570 HRDC domain NRL00_11685 PF00271 Helicase conserved C-terminal domain NRL00_11685 PF09382 RQC domain NRL00_11685 PF00270 DEAD/DEAH box helicase NRL00_11690 PF08298 PrkA AAA domain NRL00_11690 PF06798 PrkA serine protein kinase C-terminal domain NRL00_11695 PF04285 Protein of unknown function (DUF444) NRL00_11700 PF04293 SpoVR like protein NRL00_11705 PF00392 Bacterial regulatory proteins, gntR family NRL00_11705 PF07840 FadR C-terminal domain NRL00_11710 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NRL00_11715 PF02600 Disulfide bond formation protein DsbB NRL00_11720 PF09335 SNARE associated Golgi protein NRL00_11730 PF00271 Helicase conserved C-terminal domain NRL00_11730 PF04851 Type III restriction enzyme, res subunit NRL00_11730 PF02151 UvrB/uvrC motif NRL00_11730 PF12344 Ultra-violet resistance protein B NRL00_11730 PF17757 UvrB interaction domain NRL00_11740 PF06826 Predicted Permease Membrane Region NRL00_11740 PF02080 TrkA-C domain NRL00_11745 PF01551 Peptidase family M23 NRL00_11745 PF10145 Phage-related minor tail protein NRL00_11745 PF01464 Transglycosylase SLT domain NRL00_11750 PF03401 Tripartite tricarboxylate transporter family receptor NRL00_11760 PF01970 Tripartite tricarboxylate transporter TctA family NRL00_11765 PF12431 Transcriptional regulator NRL00_11765 PF08279 HTH domain NRL00_11765 PF00072 Response regulator receiver domain NRL00_11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_11770 PF00989 PAS fold NRL00_11770 PF17203 Single cache domain 3 NRL00_11770 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRL00_11775 PF01047 MarR family NRL00_11775 PF00480 ROK family NRL00_11780 PF00672 HAMP domain NRL00_11780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_11780 PF17200 Single Cache domain 2 NRL00_11785 PF02810 SEC-C motif NRL00_11790 PF01266 FAD dependent oxidoreductase NRL00_11790 PF04324 BFD-like [2Fe-2S] binding domain NRL00_11795 PF00890 FAD binding domain NRL00_11800 PF13183 4Fe-4S dicluster domain NRL00_11800 PF02754 Cysteine-rich domain NRL00_11810 PF02335 Cytochrome c552 NRL00_11815 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRL00_11815 PF13435 Cytochrome c554 and c-prime NRL00_11820 PF13247 4Fe-4S dicluster domain NRL00_11820 PF00037 4Fe-4S binding domain NRL00_11825 PF03916 Polysulphide reductase, NrfD NRL00_11830 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRL00_11830 PF01578 Cytochrome C assembly protein NRL00_11835 PF08534 Redoxin NRL00_11840 PF03918 Cytochrome C biogenesis protein NRL00_11850 PF00768 D-alanyl-D-alanine carboxypeptidase NRL00_11855 PF01212 Beta-eliminating lyase NRL00_11865 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NRL00_11870 PF01266 FAD dependent oxidoreductase NRL00_11875 PF00571 CBS domain NRL00_11875 PF00478 IMP dehydrogenase / GMP reductase domain NRL00_11890 PF01717 Cobalamin-independent synthase, Catalytic domain NRL00_11890 PF08267 Cobalamin-independent synthase, N-terminal domain NRL00_11895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_11895 PF03466 LysR substrate binding domain NRL00_11905 PF00593 TonB dependent receptor NRL00_11905 PF07715 TonB-dependent Receptor Plug Domain NRL00_11910 PF12833 Helix-turn-helix domain NRL00_11915 PF00106 short chain dehydrogenase NRL00_11920 PF03466 LysR substrate binding domain NRL00_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_11925 PF13460 NAD(P)H-binding NRL00_11935 PF01053 Cys/Met metabolism PLP-dependent enzyme NRL00_11940 PF05193 Peptidase M16 inactive domain NRL00_11940 PF00675 Insulinase (Peptidase family M16) NRL00_11945 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRL00_11945 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRL00_11950 PF00893 Small Multidrug Resistance protein NRL00_11955 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NRL00_11955 PF18381 YcaO cyclodehydratase C-terminal domain NRL00_11960 PF01226 Formate/nitrite transporter NRL00_11965 PF02901 Pyruvate formate lyase-like NRL00_11965 PF01228 Glycine radical NRL00_11975 PF00202 Aminotransferase class-III NRL00_11980 PF00266 Aminotransferase class-V NRL00_11985 PF00392 Bacterial regulatory proteins, gntR family NRL00_11985 PF07702 UTRA domain NRL00_11995 PF00005 ABC transporter NRL00_12000 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_12005 PF01266 FAD dependent oxidoreductase NRL00_12010 PF03692 Putative zinc- or iron-chelating domain NRL00_12015 PF01810 LysE type translocator NRL00_12020 PF12833 Helix-turn-helix domain NRL00_12040 PF00549 CoA-ligase NRL00_12040 PF02629 CoA binding domain NRL00_12045 PF00549 CoA-ligase NRL00_12045 PF08442 ATP-grasp domain NRL00_12050 PF02817 e3 binding domain NRL00_12050 PF00364 Biotin-requiring enzyme NRL00_12050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL00_12055 PF16870 2-oxoglutarate dehydrogenase C-terminal NRL00_12055 PF00676 Dehydrogenase E1 component NRL00_12055 PF16078 2-oxoglutarate dehydrogenase N-terminus NRL00_12055 PF02779 Transketolase, pyrimidine binding domain NRL00_12060 PF13085 2Fe-2S iron-sulfur cluster binding domain NRL00_12065 PF00890 FAD binding domain NRL00_12065 PF02910 Fumarate reductase flavoprotein C-term NRL00_12070 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRL00_12075 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRL00_12080 PF00285 Citrate synthase, C-terminal domain NRL00_12095 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL00_12095 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL00_12100 PF01266 FAD dependent oxidoreductase NRL00_12100 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NRL00_12110 PF03606 C4-dicarboxylate anaerobic carrier NRL00_12125 PF01863 Protein of unknown function DUF45 NRL00_12140 PF01197 Ribosomal protein L31 NRL00_12145 PF00444 Ribosomal protein L36 NRL00_12150 PF02678 Pirin NRL00_12150 PF05726 Pirin C-terminal cupin domain NRL00_12155 PF03466 LysR substrate binding domain NRL00_12155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_12160 PF08411 Exonuclease C-terminal NRL00_12160 PF00929 Exonuclease NRL00_12175 PF03788 LrgA family NRL00_12180 PF04172 LrgB-like family NRL00_12185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRL00_12185 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NRL00_12190 PF00501 AMP-binding enzyme NRL00_12195 PF08891 YfcL protein NRL00_12205 PF03741 Integral membrane protein TerC family NRL00_12210 PF00691 OmpA family NRL00_12215 PF00563 EAL domain NRL00_12215 PF03707 Bacterial signalling protein N terminal repeat NRL00_12215 PF00990 Diguanylate cyclase, GGDEF domain NRL00_12220 PF13689 YfiR/HmsC-like NRL00_12225 PF00158 Sigma-54 interaction domain NRL00_12225 PF18024 Helix-turn-helix domain NRL00_12235 PF01329 Pterin 4 alpha carbinolamine dehydratase NRL00_12240 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NRL00_12245 PF05128 Domain of unknown function (DUF697) NRL00_12250 PF04317 YcjX-like family, DUF463 NRL00_12260 PF06667 Phage shock protein B NRL00_12265 PF04012 PspA/IM30 family NRL00_12270 PF02954 Bacterial regulatory protein, Fis family NRL00_12270 PF00158 Sigma-54 interaction domain NRL00_12275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_12280 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_12285 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_12285 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL00_12295 PF00005 ABC transporter NRL00_12295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_12300 PF00005 ABC transporter NRL00_12305 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NRL00_12310 PF00156 Phosphoribosyl transferase domain NRL00_12315 PF02674 Colicin V production protein NRL00_12320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL00_12320 PF02403 Seryl-tRNA synthetase N-terminal domain NRL00_12325 PF00004 ATPase family associated with various cellular activities (AAA) NRL00_12325 PF16193 AAA C-terminal domain NRL00_12325 PF12002 MgsA AAA+ ATPase C terminal NRL00_12330 PF03548 Outer membrane lipoprotein carrier protein LolA NRL00_12335 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NRL00_12335 PF17854 FtsK alpha domain NRL00_12335 PF01580 FtsK/SpoIIIE family NRL00_12335 PF09397 Ftsk gamma domain NRL00_12340 PF01037 Lrp/AsnC ligand binding domain NRL00_12345 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_12350 PF00990 Diguanylate cyclase, GGDEF domain NRL00_12350 PF17158 Membrane-associated sensor, integral membrane domain NRL00_12355 PF05433 Glycine zipper 2TM domain NRL00_12360 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NRL00_12365 PF04376 Arginine-tRNA-protein transferase, N terminus NRL00_12365 PF04377 Arginine-tRNA-protein transferase, C terminus NRL00_12370 PF01176 Translation initiation factor 1A / IF-1 NRL00_12375 PF02861 Clp amino terminal domain, pathogenicity island component NRL00_12375 PF10431 C-terminal, D2-small domain, of ClpB protein NRL00_12375 PF17871 AAA lid domain NRL00_12375 PF07724 AAA domain (Cdc48 subfamily) NRL00_12375 PF00004 ATPase family associated with various cellular activities (AAA) NRL00_12380 PF02617 ATP-dependent Clp protease adaptor protein ClpS NRL00_12385 PF00313 'Cold-shock' DNA-binding domain NRL00_12390 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NRL00_12390 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NRL00_12435 PF04717 Type VI secretion system, phage-baseplate injector NRL00_12450 PF14331 ImcF-related N-terminal domain NRL00_12450 PF06761 Intracellular multiplication and human macrophage-killing NRL00_12450 PF06744 Type VI secretion protein IcmF C-terminal NRL00_12465 PF00158 Sigma-54 interaction domain NRL00_12465 PF02954 Bacterial regulatory protein, Fis family NRL00_12470 PF07724 AAA domain (Cdc48 subfamily) NRL00_12470 PF00004 ATPase family associated with various cellular activities (AAA) NRL00_12470 PF17871 AAA lid domain NRL00_12470 PF10431 C-terminal, D2-small domain, of ClpB protein NRL00_12480 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NRL00_12500 PF05947 Type VI secretion system, TssF NRL00_12510 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NRL00_12525 PF03527 RHS protein NRL00_12525 PF05593 RHS Repeat NRL00_12535 PF04717 Type VI secretion system, phage-baseplate injector NRL00_12540 PF05638 Type VI secretion system effector, Hcp NRL00_12550 PF10722 Putative bacterial sensory transduction regulator NRL00_12560 PF00265 Thymidine kinase NRL00_12565 PF03553 Na+/H+ antiporter family NRL00_12570 PF00816 H-NS histone family NRL00_12575 PF01923 Cobalamin adenosyltransferase NRL00_12580 PF12843 Putative quorum-sensing-regulated virulence factor NRL00_12585 PF04055 Radical SAM superfamily NRL00_12590 PF06508 Queuosine biosynthesis protein QueC NRL00_12605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NRL00_12610 PF18073 Rubredoxin metal binding domain NRL00_12620 PF00216 Bacterial DNA-binding protein NRL00_12625 PF00575 S1 RNA binding domain NRL00_12630 PF02224 Cytidylate kinase NRL00_12635 PF00925 GTP cyclohydrolase II NRL00_12640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_12640 PF03466 LysR substrate binding domain NRL00_12645 PF03466 LysR substrate binding domain NRL00_12645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_12650 PF07690 Major Facilitator Superfamily NRL00_12665 PF00881 Nitroreductase family NRL00_12670 PF00563 EAL domain NRL00_12670 PF13188 PAS domain NRL00_12670 PF03707 Bacterial signalling protein N terminal repeat NRL00_12670 PF00990 Diguanylate cyclase, GGDEF domain NRL00_12680 PF03466 LysR substrate binding domain NRL00_12680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_12685 PF00072 Response regulator receiver domain NRL00_12695 PF01212 Beta-eliminating lyase NRL00_12710 PF00248 Aldo/keto reductase family NRL00_12715 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NRL00_12725 PF03411 Penicillin-insensitive murein endopeptidase NRL00_12735 PF04536 TPM domain NRL00_12755 PF01618 MotA/TolQ/ExbB proton channel family NRL00_12760 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL00_12760 PF00691 OmpA family NRL00_12765 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NRL00_12770 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRL00_12775 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRL00_12775 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRL00_12785 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRL00_12785 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRL00_12790 PF00384 Molybdopterin oxidoreductase NRL00_12790 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRL00_12790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL00_12795 PF00146 NADH dehydrogenase NRL00_12800 PF12838 4Fe-4S dicluster domain NRL00_12805 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NRL00_12810 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NRL00_12815 PF00361 Proton-conducting membrane transporter NRL00_12815 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NRL00_12820 PF00361 Proton-conducting membrane transporter NRL00_12825 PF00361 Proton-conducting membrane transporter NRL00_12835 PF00072 Response regulator receiver domain NRL00_12840 PF01966 HD domain NRL00_12845 PF02769 AIR synthase related protein, C-terminal domain NRL00_12845 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NRL00_12845 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NRL00_12850 PF01464 Transglycosylase SLT domain NRL00_12850 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_12855 PF07191 zinc-ribbons NRL00_12860 PF01926 50S ribosome-binding GTPase NRL00_12860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NRL00_12865 PF13360 PQQ-like domain NRL00_12870 PF09976 Tetratricopeptide repeat-like domain NRL00_12875 PF03129 Anticodon binding domain NRL00_12875 PF13393 Histidyl-tRNA synthetase NRL00_12880 PF04551 GcpE protein NRL00_12885 PF13464 Domain of unknown function (DUF4115) NRL00_12895 PF04055 Radical SAM superfamily NRL00_12900 PF00334 Nucleoside diphosphate kinase NRL00_12905 PF00883 Cytosol aminopeptidase family, catalytic domain NRL00_12905 PF12404 Peptidase NRL00_12910 PF00883 Cytosol aminopeptidase family, catalytic domain NRL00_12910 PF12404 Peptidase NRL00_12915 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL00_12920 PF00012 Hsp70 protein NRL00_12925 PF07743 HSCB C-terminal oligomerisation domain NRL00_12925 PF00226 DnaJ domain NRL00_12930 PF01521 Iron-sulphur cluster biosynthesis NRL00_12935 PF01592 NifU-like N terminal domain NRL00_12940 PF00266 Aminotransferase class-V NRL00_12945 PF02082 Transcriptional regulator NRL00_12950 PF00588 SpoU rRNA Methylase family NRL00_12960 PF02036 SCP-2 sterol transfer family NRL00_12965 PF01136 Peptidase family U32 NRL00_12970 PF01136 Peptidase family U32 NRL00_12975 PF07719 Tetratricopeptide repeat NRL00_12975 PF13181 Tetratricopeptide repeat NRL00_12985 PF07549 SecD/SecF GG Motif NRL00_12985 PF02355 Protein export membrane protein NRL00_12990 PF02355 Protein export membrane protein NRL00_12990 PF07549 SecD/SecF GG Motif NRL00_12990 PF13721 SecD export protein N-terminal TM region NRL00_12995 PF02699 Preprotein translocase subunit NRL00_13000 PF01702 Queuine tRNA-ribosyltransferase NRL00_13005 PF02547 Queuosine biosynthesis protein NRL00_13010 PF00571 CBS domain NRL00_13015 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRL00_13015 PF00578 AhpC/TSA family NRL00_13020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_13020 PF13192 Thioredoxin domain NRL00_13025 PF07690 Major Facilitator Superfamily NRL00_13030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_13030 PF00512 His Kinase A (phospho-acceptor) domain NRL00_13030 PF00989 PAS fold NRL00_13040 PF08241 Methyltransferase domain NRL00_13045 PF00884 Sulfatase NRL00_13050 PF04055 Radical SAM superfamily NRL00_13050 PF13186 Iron-sulfur cluster-binding domain NRL00_13055 PF02347 Glycine cleavage system P-protein NRL00_13060 PF01597 Glycine cleavage H-protein NRL00_13065 PF08669 Glycine cleavage T-protein C-terminal barrel domain NRL00_13065 PF01571 Aminomethyltransferase folate-binding domain NRL00_13070 PF01494 FAD binding domain NRL00_13075 PF01494 FAD binding domain NRL00_13080 PF03695 Uncharacterised protein family (UPF0149) NRL00_13085 PF05164 Cell division protein ZapA NRL00_13095 PF07690 Major Facilitator Superfamily NRL00_13100 PF00043 Glutathione S-transferase, C-terminal domain NRL00_13100 PF02798 Glutathione S-transferase, N-terminal domain NRL00_13110 PF00459 Inositol monophosphatase family NRL00_13115 PF00672 HAMP domain NRL00_13115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_13120 PF02535 ZIP Zinc transporter NRL00_13130 PF01048 Phosphorylase superfamily NRL00_13140 PF01497 Periplasmic binding protein NRL00_13155 PF02561 Flagellar protein FliS NRL00_13160 PF07196 Flagellin hook IN motif NRL00_13160 PF07195 Flagellar hook-associated protein 2 C-terminus NRL00_13160 PF02465 Flagellar hook-associated protein 2 N-terminus NRL00_13170 PF00700 Bacterial flagellin C-terminal helical region NRL00_13170 PF07196 Flagellin hook IN motif NRL00_13170 PF00669 Bacterial flagellin N-terminal helical region NRL00_13175 PF00700 Bacterial flagellin C-terminal helical region NRL00_13175 PF07196 Flagellin hook IN motif NRL00_13175 PF00669 Bacterial flagellin N-terminal helical region NRL00_13180 PF03458 UPF0126 domain NRL00_13190 PF02926 THUMP domain NRL00_13190 PF02568 Thiamine biosynthesis protein (ThiI) NRL00_13200 PF06832 Penicillin-Binding Protein C-terminus Family NRL00_13200 PF00912 Transglycosylase NRL00_13200 PF00905 Penicillin binding protein transpeptidase domain NRL00_13205 PF01835 MG2 domain NRL00_13205 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NRL00_13205 PF07678 A-macroglobulin TED domain NRL00_13205 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NRL00_13205 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NRL00_13205 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NRL00_13205 PF17962 Bacterial macroglobulin domain 6 NRL00_13205 PF00207 Alpha-2-macroglobulin family NRL00_13205 PF07703 Alpha-2-macroglobulin bait region domain NRL00_13210 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_13210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL00_13215 PF00990 Diguanylate cyclase, GGDEF domain NRL00_13215 PF03707 Bacterial signalling protein N terminal repeat NRL00_13215 PF00563 EAL domain NRL00_13220 PF04055 Radical SAM superfamily NRL00_13230 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_13235 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_13240 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_13245 PF00005 ABC transporter NRL00_13250 PF03956 Lysine exporter LysO NRL00_13255 PF01979 Amidohydrolase family NRL00_13260 PF04336 Acyl carrier protein phosphodiesterase NRL00_13280 PF03960 ArsC family NRL00_13285 PF00578 AhpC/TSA family NRL00_13290 PF13181 Tetratricopeptide repeat NRL00_13290 PF01435 Peptidase family M48 NRL00_13295 PF01206 Sulfurtransferase TusA NRL00_13300 PF01594 AI-2E family transporter NRL00_13310 PF00561 alpha/beta hydrolase fold NRL00_13315 PF03976 Polyphosphate kinase 2 (PPK2) NRL00_13320 PF00005 ABC transporter NRL00_13320 PF08402 TOBE domain NRL00_13325 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_13330 PF14785 Maltose transport system permease protein MalF P2 domain NRL00_13330 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_13335 PF01547 Bacterial extracellular solute-binding protein NRL00_13340 PF04245 37-kD nucleoid-associated bacterial protein NRL00_13345 PF07208 Protein of unknown function (DUF1414) NRL00_13350 PF00884 Sulfatase NRL00_13350 PF11893 Domain of unknown function (DUF3413) NRL00_13355 PF00593 TonB dependent receptor NRL00_13355 PF07715 TonB-dependent Receptor Plug Domain NRL00_13360 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRL00_13360 PF00326 Prolyl oligopeptidase family NRL00_13380 PF03974 Ecotin NRL00_13385 PF04219 Protein of unknown function, DUF NRL00_13390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_13390 PF03466 LysR substrate binding domain NRL00_13395 PF02153 Prephenate dehydrogenase NRL00_13395 PF01817 Chorismate mutase type II NRL00_13400 PF00793 DAHP synthetase I family NRL00_13405 PF03009 Glycerophosphoryl diester phosphodiesterase family NRL00_13410 PF01266 FAD dependent oxidoreductase NRL00_13410 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NRL00_13420 PF00455 DeoR C terminal sensor domain NRL00_13420 PF08220 DeoR-like helix-turn-helix domain NRL00_13425 PF07690 Major Facilitator Superfamily NRL00_13430 PF00230 Major intrinsic protein NRL00_13435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NRL00_13435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRL00_13440 PF02743 Cache domain NRL00_13440 PF00672 HAMP domain NRL00_13440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_13450 PF03466 LysR substrate binding domain NRL00_13450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_13475 PF00248 Aldo/keto reductase family NRL00_13480 PF07690 Major Facilitator Superfamily NRL00_13495 PF05114 Protein of unknown function (DUF692) NRL00_13515 PF02322 Cytochrome bd terminal oxidase subunit II NRL00_13520 PF01654 Cytochrome bd terminal oxidase subunit I NRL00_13525 PF00392 Bacterial regulatory proteins, gntR family NRL00_13525 PF00155 Aminotransferase class I and II NRL00_13540 PF04391 Protein of unknown function (DUF533) NRL00_13545 PF00892 EamA-like transporter family NRL00_13560 PF10689 Protein of unknown function (DUF2496) NRL00_13570 PF07690 Major Facilitator Superfamily NRL00_13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_13575 PF03466 LysR substrate binding domain NRL00_13585 PF07690 Major Facilitator Superfamily NRL00_13590 PF09009 Exotoxin A catalytic NRL00_13590 PF09101 Exotoxin A binding NRL00_13590 PF09102 Exotoxin A, targeting NRL00_13595 PF00849 RNA pseudouridylate synthase NRL00_13595 PF01479 S4 domain NRL00_13610 PF01844 HNH endonuclease NRL00_13615 PF00300 Histidine phosphatase superfamily (branch 1) NRL00_13620 PF13309 HTH domain NRL00_13620 PF08348 YheO-like PAS domain NRL00_13625 PF03313 Serine dehydratase alpha chain NRL00_13630 PF01042 Endoribonuclease L-PSP NRL00_13640 PF00672 HAMP domain NRL00_13640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_13655 PF03466 LysR substrate binding domain NRL00_13660 PF14864 Alkyl sulfatase C-terminal NRL00_13660 PF14863 Alkyl sulfatase dimerisation NRL00_13660 PF00753 Metallo-beta-lactamase superfamily NRL00_13670 PF17810 Arginine decarboxylase helical bundle domain NRL00_13670 PF17944 Arginine decarboxylase C-terminal helical extension NRL00_13670 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL00_13680 PF07687 Peptidase dimerisation domain NRL00_13680 PF01546 Peptidase family M20/M25/M40 NRL00_13705 PF04264 YceI-like domain NRL00_13710 PF03466 LysR substrate binding domain NRL00_13710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_13720 PF01268 Formate--tetrahydrofolate ligase NRL00_13725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_13725 PF00672 HAMP domain NRL00_13725 PF17200 Single Cache domain 2 NRL00_13730 PF01227 GTP cyclohydrolase I NRL00_13735 PF00994 Probable molybdopterin binding domain NRL00_13735 PF03454 MoeA C-terminal region (domain IV) NRL00_13735 PF03453 MoeA N-terminal region (domain I and II) NRL00_13740 PF00899 ThiF family NRL00_13745 PF06291 Bor protein NRL00_13750 PF06291 Bor protein NRL00_13760 PF06406 StbA protein NRL00_13765 PF00561 alpha/beta hydrolase fold NRL00_13770 PF03459 TOBE domain NRL00_13770 PF00005 ABC transporter NRL00_13775 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_13785 PF02391 MoaE protein NRL00_13790 PF02597 ThiS family NRL00_13795 PF01967 MoaC family NRL00_13800 PF00994 Probable molybdopterin binding domain NRL00_13805 PF03264 NapC/NirT cytochrome c family, N-terminal region NRL00_13810 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NRL00_13815 PF13237 4Fe-4S dicluster domain NRL00_13815 PF12801 4Fe-4S binding domain NRL00_13820 PF12800 4Fe-4S binding domain NRL00_13820 PF12838 4Fe-4S dicluster domain NRL00_13825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL00_13825 PF00384 Molybdopterin oxidoreductase NRL00_13825 PF01568 Molydopterin dinucleotide binding domain NRL00_13825 PF10518 TAT (twin-arginine translocation) pathway signal sequence NRL00_13835 PF00037 4Fe-4S binding domain NRL00_13835 PF12800 4Fe-4S binding domain NRL00_13835 PF13187 4Fe-4S dicluster domain NRL00_13840 PF06463 Molybdenum Cofactor Synthesis C NRL00_13840 PF04055 Radical SAM superfamily NRL00_13845 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NRL00_13845 PF00672 HAMP domain NRL00_13845 PF07730 Histidine kinase NRL00_13845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_13850 PF00072 Response regulator receiver domain NRL00_13850 PF00196 Bacterial regulatory proteins, luxR family NRL00_13860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_13860 PF00512 His Kinase A (phospho-acceptor) domain NRL00_13860 PF09456 RcsC Alpha-Beta-Loop (ABL) NRL00_13860 PF00072 Response regulator receiver domain NRL00_13870 PF01933 Uncharacterised protein family UPF0052 NRL00_13880 PF13230 Glutamine amidotransferases class-II NRL00_13885 PF13580 SIS domain NRL00_13890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL00_13890 PF09317 Domain of unknown function (DUF1974) NRL00_13890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL00_13890 PF02770 Acyl-CoA dehydrogenase, middle domain NRL00_13895 PF11849 Domain of unknown function (DUF3369) NRL00_13905 PF00929 Exonuclease NRL00_13910 PF00075 RNase H NRL00_13915 PF08241 Methyltransferase domain NRL00_13920 PF16123 Hydroxyacylglutathione hydrolase C-terminus NRL00_13920 PF00753 Metallo-beta-lactamase superfamily NRL00_13925 PF01476 LysM domain NRL00_13925 PF01464 Transglycosylase SLT domain NRL00_13930 PF03372 Endonuclease/Exonuclease/phosphatase family NRL00_13940 PF03061 Thioesterase superfamily NRL00_13950 PF00356 Bacterial regulatory proteins, lacI family NRL00_13955 PF01464 Transglycosylase SLT domain NRL00_13955 PF14718 Soluble lytic murein transglycosylase L domain NRL00_13960 PF03707 Bacterial signalling protein N terminal repeat NRL00_13960 PF00990 Diguanylate cyclase, GGDEF domain NRL00_13960 PF00563 EAL domain NRL00_13965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRL00_13985 PF04357 TamB, inner membrane protein subunit of TAM complex NRL00_13990 PF01103 Surface antigen NRL00_13990 PF17243 POTRA domain TamA domain 1 NRL00_13990 PF07244 Surface antigen variable number repeat NRL00_14005 PF01625 Peptide methionine sulfoxide reductase NRL00_14015 PF02627 Carboxymuconolactone decarboxylase family NRL00_14020 PF00403 Heavy-metal-associated domain NRL00_14020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_14020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL00_14025 PF13416 Bacterial extracellular solute-binding protein NRL00_14035 PF00005 ABC transporter NRL00_14040 PF01066 CDP-alcohol phosphatidyltransferase NRL00_14045 PF13406 Transglycosylase SLT domain NRL00_14060 PF01047 MarR family NRL00_14070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRL00_14070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRL00_14070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRL00_14070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRL00_14075 PF17206 SeqA protein N-terminal domain NRL00_14075 PF03925 SeqA protein C-terminal domain NRL00_14080 PF12697 Alpha/beta hydrolase family NRL00_14090 PF01402 Ribbon-helix-helix protein, copG family NRL00_14095 PF00258 Flavodoxin NRL00_14105 PF01475 Ferric uptake regulator family NRL00_14110 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NRL00_14110 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL00_14115 PF00728 Glycosyl hydrolase family 20, catalytic domain NRL00_14115 PF02838 Glycosyl hydrolase family 20, domain 2 NRL00_14115 PF03173 Putative carbohydrate binding domain NRL00_14115 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NRL00_14120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL00_14120 PF00367 phosphotransferase system, EIIB NRL00_14120 PF02378 Phosphotransferase system, EIIC NRL00_14125 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NRL00_14130 PF01979 Amidohydrolase family NRL00_14135 PF01047 MarR family NRL00_14135 PF00480 ROK family NRL00_14145 PF00884 Sulfatase NRL00_14145 PF08019 Phosphoethanolamine transferase EptA/EptB NRL00_14150 PF01709 Transcriptional regulator NRL00_14155 PF01336 OB-fold nucleic acid binding domain NRL00_14155 PF02938 GAD domain NRL00_14155 PF00152 tRNA synthetases class II (D, K and N) NRL00_14160 PF01904 Protein of unknown function DUF72 NRL00_14165 PF13649 Methyltransferase domain NRL00_14170 PF08003 Protein of unknown function (DUF1698) NRL00_14190 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRL00_14190 PF00578 AhpC/TSA family NRL00_14195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_14195 PF03466 LysR substrate binding domain NRL00_14200 PF12563 Hemolytic toxin N terminal NRL00_14200 PF07968 Leukocidin/Hemolysin toxin family NRL00_14205 PF00877 NlpC/P60 family NRL00_14215 PF00171 Aldehyde dehydrogenase family NRL00_14220 PF08359 YsiA-like protein, C-terminal region NRL00_14220 PF00440 Bacterial regulatory proteins, tetR family NRL00_14230 PF00465 Iron-containing alcohol dehydrogenase NRL00_14240 PF00291 Pyridoxal-phosphate dependent enzyme NRL00_14260 PF01554 MatE NRL00_14270 PF04325 Protein of unknown function (DUF465) NRL00_14275 PF12833 Helix-turn-helix domain NRL00_14275 PF02311 AraC-like ligand binding domain NRL00_14280 PF01804 Penicillin amidase NRL00_14285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL00_14285 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRL00_14285 PF10371 Domain of unknown function NRL00_14285 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRL00_14285 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRL00_14290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRL00_14290 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRL00_14290 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_14295 PF03476 MOSC N-terminal beta barrel domain NRL00_14295 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL00_14295 PF03473 MOSC domain NRL00_14295 PF03476 MOSC N-terminal beta barrel domain NRL00_14295 PF00111 2Fe-2S iron-sulfur cluster binding domain NRL00_14295 PF03473 MOSC domain NRL00_14300 PF13426 PAS domain NRL00_14300 PF08447 PAS fold NRL00_14300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_14305 PF01435 Peptidase family M48 NRL00_14315 PF12697 Alpha/beta hydrolase family NRL00_14315 PF08241 Methyltransferase domain NRL00_14320 PF00155 Aminotransferase class I and II NRL00_14325 PF04055 Radical SAM superfamily NRL00_14325 PF06968 Biotin and Thiamin Synthesis associated domain NRL00_14330 PF00202 Aminotransferase class-III NRL00_14345 PF00152 tRNA synthetases class II (D, K and N) NRL00_14345 PF01336 OB-fold nucleic acid binding domain NRL00_14350 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRL00_14360 PF07687 Peptidase dimerisation domain NRL00_14360 PF01546 Peptidase family M20/M25/M40 NRL00_14365 PF03606 C4-dicarboxylate anaerobic carrier NRL00_14375 PF03466 LysR substrate binding domain NRL00_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_14390 PF03960 ArsC family NRL00_14395 PF07687 Peptidase dimerisation domain NRL00_14395 PF01546 Peptidase family M20/M25/M40 NRL00_14400 PF02557 D-alanyl-D-alanine carboxypeptidase NRL00_14410 PF02080 TrkA-C domain NRL00_14410 PF00999 Sodium/hydrogen exchanger family NRL00_14410 PF03471 Transporter associated domain NRL00_14420 PF02080 TrkA-C domain NRL00_14420 PF00999 Sodium/hydrogen exchanger family NRL00_14420 PF03471 Transporter associated domain NRL00_14430 PF01810 LysE type translocator NRL00_14435 PF12729 Four helix bundle sensory module for signal transduction NRL00_14435 PF00672 HAMP domain NRL00_14435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_14440 PF07509 Protein of unknown function (DUF1523) NRL00_14455 PF01156 Inosine-uridine preferring nucleoside hydrolase NRL00_14460 PF00849 RNA pseudouridylate synthase NRL00_14465 PF01048 Phosphorylase superfamily NRL00_14470 PF00465 Iron-containing alcohol dehydrogenase NRL00_14475 PF04355 SmpA / OmlA family NRL00_14480 PF13460 NAD(P)H-binding NRL00_14485 PF03658 RnfH family Ubiquitin NRL00_14490 PF03364 Polyketide cyclase / dehydrase and lipid transport NRL00_14495 PF01668 SmpB protein NRL00_14525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_14525 PF03466 LysR substrate binding domain NRL00_14530 PF00291 Pyridoxal-phosphate dependent enzyme NRL00_14540 PF00916 Sulfate permease family NRL00_14540 PF01740 STAS domain NRL00_14545 PF00180 Isocitrate/isopropylmalate dehydrogenase NRL00_14550 PF12833 Helix-turn-helix domain NRL00_14555 PF01238 Phosphomannose isomerase type I NRL00_14580 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_14580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL00_14585 PF13411 MerR HTH family regulatory protein NRL00_14595 PF00583 Acetyltransferase (GNAT) family NRL00_14625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL00_14625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL00_14625 PF02378 Phosphotransferase system, EIIC NRL00_14630 PF07690 Major Facilitator Superfamily NRL00_14635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL00_14635 PF02378 Phosphotransferase system, EIIC NRL00_14635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRL00_14645 PF00849 RNA pseudouridylate synthase NRL00_14650 PF00293 NUDIX domain NRL00_14660 PF04356 Protein of unknown function (DUF489) NRL00_14665 PF08328 Adenylosuccinate lyase C-terminal NRL00_14665 PF00206 Lyase NRL00_14670 PF08007 Cupin superfamily protein NRL00_14685 PF13508 Acetyltransferase (GNAT) domain NRL00_14695 PF13417 Glutathione S-transferase, N-terminal domain NRL00_14700 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NRL00_14700 PF01243 Pyridoxamine 5'-phosphate oxidase NRL00_14715 PF01189 16S rRNA methyltransferase RsmB/F NRL00_14715 PF01029 NusB family NRL00_14720 PF00462 Glutaredoxin NRL00_14725 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRL00_14725 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRL00_14730 PF04333 MlaA lipoprotein NRL00_14740 PF03918 Cytochrome C biogenesis protein NRL00_14745 PF08534 Redoxin NRL00_14750 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRL00_14750 PF01578 Cytochrome C assembly protein NRL00_14755 PF03100 CcmE NRL00_14760 PF04995 Heme exporter protein D (CcmD) NRL00_14765 PF01578 Cytochrome C assembly protein NRL00_14770 PF03379 CcmB protein NRL00_14775 PF00005 ABC transporter NRL00_14785 PF01584 CheW-like domain NRL00_14795 PF13614 AAA domain NRL00_14800 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL00_14800 PF00691 OmpA family NRL00_14805 PF01618 MotA/TolQ/ExbB proton channel family NRL00_14810 PF00072 Response regulator receiver domain NRL00_14810 PF01339 CheB methylesterase NRL00_14815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_14815 PF01584 CheW-like domain NRL00_14815 PF02895 Signal transducing histidine kinase, homodimeric domain NRL00_14815 PF01627 Hpt domain NRL00_14815 PF00072 Response regulator receiver domain NRL00_14820 PF04344 Chemotaxis phosphatase, CheZ NRL00_14825 PF00072 Response regulator receiver domain NRL00_14830 PF04542 Sigma-70 region 2 NRL00_14830 PF04539 Sigma-70 region 3 NRL00_14830 PF04545 Sigma-70, region 4 NRL00_14835 PF10609 NUBPL iron-transfer P-loop NTPase NRL00_14840 PF00448 SRP54-type protein, GTPase domain NRL00_14845 PF00771 FHIPEP family NRL00_14850 PF01312 FlhB HrpN YscU SpaS Family NRL00_14855 PF01311 Bacterial export proteins, family 1 NRL00_14860 PF01313 Bacterial export proteins, family 3 NRL00_14865 PF00813 FliP family NRL00_14870 PF04347 Flagellar biosynthesis protein, FliO NRL00_14875 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRL00_14880 PF02154 Flagellar motor switch protein FliM NRL00_14880 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRL00_14900 PF18269 T3SS EscN ATPase C-terminal domain NRL00_14900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL00_14910 PF14842 FliG N-terminal domain NRL00_14910 PF14841 FliG middle domain NRL00_14910 PF01706 FliG C-terminal domain NRL00_14915 PF08345 Flagellar M-ring protein C-terminal NRL00_14915 PF01514 Secretory protein of YscJ/FliF family NRL00_14920 PF02049 Flagellar hook-basal body complex protein FliE NRL00_14935 PF03960 ArsC family NRL00_14940 PF01758 Sodium Bile acid symporter family NRL00_14945 PF02374 Anion-transporting ATPase NRL00_14950 PF06953 Arsenical resistance operon trans-acting repressor ArsD NRL00_14955 PF01022 Bacterial regulatory protein, arsR family NRL00_14960 PF02001 Protein of unknown function DUF134 NRL00_14970 PF00072 Response regulator receiver domain NRL00_14975 PF00919 Uncharacterized protein family UPF0004 NRL00_14975 PF18693 TRAM domain NRL00_14975 PF04055 Radical SAM superfamily NRL00_14980 PF00486 Transcriptional regulatory protein, C terminal NRL00_14980 PF00072 Response regulator receiver domain NRL00_14985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_14990 PF02685 Glucokinase NRL00_14995 PF01418 Helix-turn-helix domain, rpiR family NRL00_14995 PF01380 SIS domain NRL00_15000 PF00224 Pyruvate kinase, barrel domain NRL00_15000 PF02887 Pyruvate kinase, alpha/beta domain NRL00_15010 PF00873 AcrB/AcrD/AcrF family NRL00_15015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL00_15015 PF02770 Acyl-CoA dehydrogenase, middle domain NRL00_15015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL00_15015 PF09317 Domain of unknown function (DUF1974) NRL00_15020 PF00440 Bacterial regulatory proteins, tetR family NRL00_15035 PF00384 Molybdopterin oxidoreductase NRL00_15040 PF02634 FdhD/NarQ family NRL00_15045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_15045 PF03466 LysR substrate binding domain NRL00_15055 PF01476 LysM domain NRL00_15055 PF17969 L,D-transpeptidase C-terminal domain NRL00_15055 PF03734 L,D-transpeptidase catalytic domain NRL00_15065 PF01575 MaoC like domain NRL00_15070 PF05971 RNA methyltransferase NRL00_15075 PF00877 NlpC/P60 family NRL00_15080 PF01648 4'-phosphopantetheinyl transferase superfamily NRL00_15085 PF00085 Thioredoxin NRL00_15095 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRL00_15100 PF00551 Formyl transferase NRL00_15100 PF01842 ACT domain NRL00_15110 PF13091 PLD-like domain NRL00_15110 PF13396 Phospholipase_D-nuclease N-terminal NRL00_15125 PF01551 Peptidase family M23 NRL00_15130 PF00128 Alpha amylase, catalytic domain NRL00_15135 PF01551 Peptidase family M23 NRL00_15135 PF01464 Transglycosylase SLT domain NRL00_15135 PF10145 Phage-related minor tail protein NRL00_15140 PF00230 Major intrinsic protein NRL00_15145 PF02075 Crossover junction endodeoxyribonuclease RuvC NRL00_15150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRL00_15175 PF05656 Protein of unknown function (DUF805) NRL00_15180 PF12833 Helix-turn-helix domain NRL00_15200 PF08497 Radical SAM N-terminal NRL00_15200 PF11842 Domain of unknown function (DUF3362) NRL00_15200 PF04055 Radical SAM superfamily NRL00_15210 PF00873 AcrB/AcrD/AcrF family NRL00_15215 PF00529 HlyD membrane-fusion protein of T1SS NRL00_15215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_15220 PF00990 Diguanylate cyclase, GGDEF domain NRL00_15225 PF01734 Patatin-like phospholipase NRL00_15230 PF00209 Sodium:neurotransmitter symporter family NRL00_15245 PF01389 OmpA-like transmembrane domain NRL00_15245 PF00691 OmpA family NRL00_15250 PF01389 OmpA-like transmembrane domain NRL00_15250 PF00691 OmpA family NRL00_15255 PF00691 OmpA family NRL00_15255 PF01389 OmpA-like transmembrane domain NRL00_15260 PF00390 Malic enzyme, N-terminal domain NRL00_15260 PF03949 Malic enzyme, NAD binding domain NRL00_15265 PF06719 AraC-type transcriptional regulator N-terminus NRL00_15265 PF12833 Helix-turn-helix domain NRL00_15270 PF01554 MatE NRL00_15275 PF10692 Protein of unknown function (DUF2498) NRL00_15280 PF00990 Diguanylate cyclase, GGDEF domain NRL00_15280 PF00072 Response regulator receiver domain NRL00_15285 PF00860 Permease family NRL00_15295 PF01235 Sodium:alanine symporter family NRL00_15300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRL00_15300 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRL00_15305 PF01699 Sodium/calcium exchanger protein NRL00_15310 PF08534 Redoxin NRL00_15320 PF00293 NUDIX domain NRL00_15330 PF00005 ABC transporter NRL00_15335 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_15340 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_15345 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_15360 PF00005 ABC transporter NRL00_15365 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRL00_15365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRL00_15370 PF03932 CutC family NRL00_15375 PF00480 ROK family NRL00_15385 PF01435 Peptidase family M48 NRL00_15390 PF12849 PBP superfamily domain NRL00_15395 PF11808 Phosphate regulon sensor protein PhoR NRL00_15395 PF00989 PAS fold NRL00_15395 PF00512 His Kinase A (phospho-acceptor) domain NRL00_15395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_15400 PF00072 Response regulator receiver domain NRL00_15400 PF00486 Transcriptional regulatory protein, C terminal NRL00_15405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL00_15410 PF02515 CoA-transferase family III NRL00_15415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRL00_15415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRL00_15415 PF02770 Acyl-CoA dehydrogenase, middle domain NRL00_15420 PF01590 GAF domain NRL00_15420 PF02954 Bacterial regulatory protein, Fis family NRL00_15420 PF00158 Sigma-54 interaction domain NRL00_15425 PF00171 Aldehyde dehydrogenase family NRL00_15435 PF00892 EamA-like transporter family NRL00_15440 PF00072 Response regulator receiver domain NRL00_15440 PF12431 Transcriptional regulator NRL00_15445 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRL00_15445 PF00989 PAS fold NRL00_15445 PF17203 Single cache domain 3 NRL00_15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_15450 PF00390 Malic enzyme, N-terminal domain NRL00_15450 PF03949 Malic enzyme, NAD binding domain NRL00_15455 PF03390 2-hydroxycarboxylate transporter family NRL00_15465 PF01047 MarR family NRL00_15470 PF00529 HlyD membrane-fusion protein of T1SS NRL00_15470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_15495 PF01679 Proteolipid membrane potential modulator NRL00_15505 PF13597 Anaerobic ribonucleoside-triphosphate reductase NRL00_15505 PF03477 ATP cone domain NRL00_15515 PF01653 NAD-dependent DNA ligase adenylation domain NRL00_15515 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NRL00_15515 PF12826 Helix-hairpin-helix motif NRL00_15515 PF00533 BRCA1 C Terminus (BRCT) domain NRL00_15515 PF03120 NAD-dependent DNA ligase OB-fold domain NRL00_15520 PF04354 ZipA, C-terminal FtsZ-binding domain NRL00_15525 PF06470 SMC proteins Flexible Hinge Domain NRL00_15525 PF02463 RecF/RecN/SMC N terminal domain NRL00_15535 PF03458 UPF0126 domain NRL00_15545 PF05951 Bacterial protein of unknown function (DUF882) NRL00_15550 PF01471 Putative peptidoglycan binding domain NRL00_15550 PF03734 L,D-transpeptidase catalytic domain NRL00_15565 PF00535 Glycosyl transferase family 2 NRL00_15580 PF00128 Alpha amylase, catalytic domain NRL00_15590 PF00196 Bacterial regulatory proteins, luxR family NRL00_15590 PF00072 Response regulator receiver domain NRL00_15610 PF02080 TrkA-C domain NRL00_15610 PF02254 TrkA-N domain NRL00_15610 PF00999 Sodium/hydrogen exchanger family NRL00_15615 PF00990 Diguanylate cyclase, GGDEF domain NRL00_15620 PF11734 TilS substrate C-terminal domain NRL00_15620 PF01171 PP-loop family NRL00_15620 PF09179 TilS substrate binding domain NRL00_15625 PF05649 Peptidase family M13 NRL00_15625 PF01431 Peptidase family M13 NRL00_15645 PF02086 D12 class N6 adenine-specific DNA methyltransferase NRL00_15655 PF01761 3-dehydroquinate synthase NRL00_15660 PF01202 Shikimate kinase NRL00_15665 PF07660 Secretin and TonB N terminus short domain NRL00_15665 PF03958 Bacterial type II/III secretion system short domain NRL00_15665 PF11741 AMIN domain NRL00_15665 PF00263 Bacterial type II and III secretion system protein NRL00_15675 PF04350 Pilus assembly protein, PilO NRL00_15685 PF11104 Type IV pilus assembly protein PilM; NRL00_15690 PF17092 Penicillin-binding protein OB-like domain NRL00_15690 PF00912 Transglycosylase NRL00_15690 PF00905 Penicillin binding protein transpeptidase domain NRL00_15695 PF03466 LysR substrate binding domain NRL00_15695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_15700 PF00672 HAMP domain NRL00_15700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_15715 PF03466 LysR substrate binding domain NRL00_15715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_15730 PF01551 Peptidase family M23 NRL00_15730 PF08525 Opacity-associated protein A N-terminal motif NRL00_15730 PF01476 LysM domain NRL00_15740 PF12795 Mechanosensitive ion channel porin domain NRL00_15740 PF00924 Mechanosensitive ion channel NRL00_15740 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRL00_15745 PF03009 Glycerophosphoryl diester phosphodiesterase family NRL00_15750 PF02743 Cache domain NRL00_15750 PF00672 HAMP domain NRL00_15750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_15755 PF00890 FAD binding domain NRL00_15755 PF02910 Fumarate reductase flavoprotein C-term NRL00_15760 PF13085 2Fe-2S iron-sulfur cluster binding domain NRL00_15760 PF13183 4Fe-4S dicluster domain NRL00_15765 PF02300 Fumarate reductase subunit C NRL00_15770 PF02313 Fumarate reductase subunit D NRL00_15790 PF06224 Winged helix DNA-binding domain NRL00_15795 PF13847 Methyltransferase domain NRL00_15805 PF00501 AMP-binding enzyme NRL00_15825 PF00072 Response regulator receiver domain NRL00_15825 PF00486 Transcriptional regulatory protein, C terminal NRL00_15830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_15830 PF00512 His Kinase A (phospho-acceptor) domain NRL00_15830 PF08521 Two-component sensor kinase N-terminal NRL00_15850 PF00478 IMP dehydrogenase / GMP reductase domain NRL00_15860 PF08207 Elongation factor P (EF-P) KOW-like domain NRL00_15860 PF09285 Elongation factor P, C-terminal NRL00_15860 PF01132 Elongation factor P (EF-P) OB domain NRL00_15865 PF09997 Predicted membrane protein (DUF2238) NRL00_15875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL00_15875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL00_15885 PF00990 Diguanylate cyclase, GGDEF domain NRL00_15895 PF13419 Haloacid dehalogenase-like hydrolase NRL00_15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_15905 PF03466 LysR substrate binding domain NRL00_15910 PF05230 MASE2 domain NRL00_15910 PF00990 Diguanylate cyclase, GGDEF domain NRL00_15920 PF00857 Isochorismatase family NRL00_15925 PF01494 FAD binding domain NRL00_15930 PF04055 Radical SAM superfamily NRL00_15930 PF00919 Uncharacterized protein family UPF0004 NRL00_15930 PF01938 TRAM domain NRL00_15935 PF02562 PhoH-like protein NRL00_15940 PF02130 Uncharacterized protein family UPF0054 NRL00_15945 PF00571 CBS domain NRL00_15945 PF03471 Transporter associated domain NRL00_15950 PF00795 Carbon-nitrogen hydrolase NRL00_15955 PF07295 Zinc-ribbon containing domain NRL00_15960 PF00133 tRNA synthetases class I (I, L, M and V) NRL00_15960 PF13603 Leucyl-tRNA synthetase, Domain 2 NRL00_15960 PF08264 Anticodon-binding domain of tRNA NRL00_15975 PF01467 Cytidylyltransferase-like NRL00_15985 PF02590 Predicted SPOUT methyltransferase NRL00_15990 PF03717 Penicillin-binding Protein dimerisation domain NRL00_15990 PF00905 Penicillin binding protein transpeptidase domain NRL00_15995 PF01098 Cell cycle protein NRL00_16000 PF13406 Transglycosylase SLT domain NRL00_16005 PF05036 Sporulation related domain NRL00_16005 PF03330 Lytic transglycolase NRL00_16010 PF00768 D-alanyl-D-alanine carboxypeptidase NRL00_16010 PF07943 Penicillin-binding protein 5, C-terminal domain NRL00_16015 PF04359 Protein of unknown function (DUF493) NRL00_16020 PF03099 Biotin/lipoate A/B protein ligase family NRL00_16025 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NRL00_16025 PF04055 Radical SAM superfamily NRL00_16030 PF06821 Serine hydrolase NRL00_16035 PF02508 Rnf-Nqr subunit, membrane protein NRL00_16050 PF13411 MerR HTH family regulatory protein NRL00_16055 PF01368 DHH family NRL00_16055 PF02272 DHHA1 domain NRL00_16055 PF17768 RecJ OB domain NRL00_16065 PF01741 Large-conductance mechanosensitive channel, MscL NRL00_16070 PF00990 Diguanylate cyclase, GGDEF domain NRL00_16075 PF00589 Phage integrase family NRL00_16075 PF02899 Phage integrase, N-terminal SAM-like domain NRL00_16080 PF00258 Flavodoxin NRL00_16085 PF01523 Putative modulator of DNA gyrase NRL00_16090 PF01523 Putative modulator of DNA gyrase NRL00_16100 PF03734 L,D-transpeptidase catalytic domain NRL00_16100 PF17969 L,D-transpeptidase C-terminal domain NRL00_16105 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NRL00_16110 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRL00_16130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRL00_16130 PF00384 Molybdopterin oxidoreductase NRL00_16130 PF01568 Molydopterin dinucleotide binding domain NRL00_16135 PF03916 Polysulphide reductase, NrfD NRL00_16140 PF13247 4Fe-4S dicluster domain NRL00_16145 PF00512 His Kinase A (phospho-acceptor) domain NRL00_16145 PF00989 PAS fold NRL00_16145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_16150 PF00196 Bacterial regulatory proteins, luxR family NRL00_16150 PF00072 Response regulator receiver domain NRL00_16155 PF03575 Peptidase family S51 NRL00_16160 PF10415 Fumarase C C-terminus NRL00_16160 PF00206 Lyase NRL00_16170 PF02635 DsrE/DsrF-like family NRL00_16175 PF00990 Diguanylate cyclase, GGDEF domain NRL00_16180 PF07690 Major Facilitator Superfamily NRL00_16185 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NRL00_16185 PF00013 KH domain NRL00_16185 PF01138 3' exoribonuclease family, domain 1 NRL00_16185 PF03725 3' exoribonuclease family, domain 2 NRL00_16185 PF00575 S1 RNA binding domain NRL00_16190 PF00312 Ribosomal protein S15 NRL00_16195 PF09157 Pseudouridine synthase II TruB, C-terminal NRL00_16195 PF16198 tRNA pseudouridylate synthase B C-terminal domain NRL00_16195 PF01509 TruB family pseudouridylate synthase (N terminal domain) NRL00_16200 PF02033 Ribosome-binding factor A NRL00_16205 PF00009 Elongation factor Tu GTP binding domain NRL00_16205 PF08364 Bacterial translation initiation factor IF-2 associated region NRL00_16205 PF04760 Translation initiation factor IF-2, N-terminal region NRL00_16205 PF11987 Translation-initiation factor 2 NRL00_16210 PF13184 NusA-like KH domain NRL00_16210 PF08529 NusA N-terminal domain NRL00_16210 PF00575 S1 RNA binding domain NRL00_16215 PF02576 RimP N-terminal domain NRL00_16215 PF17384 RimP C-terminal SH3 domain NRL00_16230 PF03840 Preprotein translocase SecG subunit NRL00_16235 PF00121 Triosephosphate isomerase NRL00_16240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRL00_16240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRL00_16240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRL00_16240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRL00_16245 PF00809 Pterin binding enzyme NRL00_16250 PF01434 Peptidase family M41 NRL00_16250 PF00004 ATPase family associated with various cellular activities (AAA) NRL00_16250 PF17862 AAA+ lid domain NRL00_16250 PF06480 FtsH Extracellular NRL00_16255 PF01728 FtsJ-like methyltransferase NRL00_16260 PF01985 CRS1 / YhbY (CRM) domain NRL00_16270 PF01272 Transcription elongation factor, GreA/GreB, C-term NRL00_16270 PF03449 Transcription elongation factor, N-terminal NRL00_16275 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL00_16275 PF00691 OmpA family NRL00_16280 PF01618 MotA/TolQ/ExbB proton channel family NRL00_16285 PF02609 Exonuclease VII small subunit NRL00_16290 PF00348 Polyprenyl synthetase NRL00_16295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NRL00_16295 PF02779 Transketolase, pyrimidine binding domain NRL00_16295 PF02780 Transketolase, C-terminal domain NRL00_16300 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL00_16300 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_16305 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_16310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_16315 PF00005 ABC transporter NRL00_16315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_16320 PF04608 Phosphatidylglycerophosphatase A NRL00_16325 PF00586 AIR synthase related protein, N-terminal domain NRL00_16325 PF02769 AIR synthase related protein, C-terminal domain NRL00_16330 PF01029 NusB family NRL00_16335 PF00885 6,7-dimethyl-8-ribityllumazine synthase NRL00_16340 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRL00_16340 PF00925 GTP cyclohydrolase II NRL00_16345 PF00677 Lumazine binding domain NRL00_16350 PF01872 RibD C-terminal domain NRL00_16350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRL00_16355 PF03477 ATP cone domain NRL00_16370 PF00464 Serine hydroxymethyltransferase NRL00_16380 PF01627 Hpt domain NRL00_16380 PF00672 HAMP domain NRL00_16380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_16380 PF00512 His Kinase A (phospho-acceptor) domain NRL00_16380 PF00072 Response regulator receiver domain NRL00_16385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRL00_16395 PF00486 Transcriptional regulatory protein, C terminal NRL00_16395 PF00072 Response regulator receiver domain NRL00_16400 PF03264 NapC/NirT cytochrome c family, N-terminal region NRL00_16405 PF00384 Molybdopterin oxidoreductase NRL00_16405 PF18364 Molybdopterin oxidoreductase N-terminal domain NRL00_16405 PF01568 Molydopterin dinucleotide binding domain NRL00_16410 PF02613 Nitrate reductase delta subunit NRL00_16430 PF00563 EAL domain NRL00_16430 PF00990 Diguanylate cyclase, GGDEF domain NRL00_16430 PF03707 Bacterial signalling protein N terminal repeat NRL00_16430 PF13188 PAS domain NRL00_16440 PF16177 Acetyl-coenzyme A synthetase N-terminus NRL00_16440 PF00501 AMP-binding enzyme NRL00_16440 PF13193 AMP-binding enzyme C-terminal domain NRL00_16445 PF01220 Dehydroquinase class II NRL00_16450 PF00364 Biotin-requiring enzyme NRL00_16455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRL00_16455 PF00289 Biotin carboxylase, N-terminal domain NRL00_16455 PF02785 Biotin carboxylase C-terminal domain NRL00_16460 PF06196 Protein of unknown function (DUF997) NRL00_16465 PF00474 Sodium:solute symporter family NRL00_16470 PF02378 Phosphotransferase system, EIIC NRL00_16470 PF00367 phosphotransferase system, EIIB NRL00_16470 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRL00_16475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_16475 PF03466 LysR substrate binding domain NRL00_16480 PF08240 Alcohol dehydrogenase GroES-like domain NRL00_16480 PF00107 Zinc-binding dehydrogenase NRL00_16490 PF01842 ACT domain NRL00_16490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL00_16490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL00_16495 PF12464 Maltose acetyltransferase NRL00_16495 PF14602 Hexapeptide repeat of succinyl-transferase NRL00_16500 PF00881 Nitroreductase family NRL00_16505 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_16505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRL00_16510 PF01343 Peptidase family S49 NRL00_16525 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL00_16525 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL00_16530 PF07023 Protein of unknown function (DUF1315) NRL00_16535 PF00710 Asparaginase, N-terminal NRL00_16535 PF17763 Glutaminase/Asparaginase C-terminal domain NRL00_16540 PF03616 Sodium/glutamate symporter NRL00_16545 PF00672 HAMP domain NRL00_16545 PF02743 Cache domain NRL00_16545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_16555 PF00152 tRNA synthetases class II (D, K and N) NRL00_16555 PF01336 OB-fold nucleic acid binding domain NRL00_16560 PF02567 Phenazine biosynthesis-like protein NRL00_16565 PF00175 Oxidoreductase NAD-binding domain NRL00_16565 PF00258 Flavodoxin NRL00_16565 PF00667 FAD binding domain NRL00_16570 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL00_16570 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL00_16575 PF01507 Phosphoadenosine phosphosulfate reductase family NRL00_16580 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRL00_16585 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_16590 PF00571 CBS domain NRL00_16590 PF00005 ABC transporter NRL00_16595 PF00186 Dihydrofolate reductase NRL00_16600 PF12821 Threonine/Serine exporter, ThrE NRL00_16605 PF06738 Putative threonine/serine exporter NRL00_16615 PF00994 Probable molybdopterin binding domain NRL00_16625 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL00_16625 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL00_16640 PF00109 Beta-ketoacyl synthase, N-terminal domain NRL00_16640 PF02801 Beta-ketoacyl synthase, C-terminal domain NRL00_16665 PF00221 Aromatic amino acid lyase NRL00_16675 PF07977 FabA-like domain NRL00_16680 PF13193 AMP-binding enzyme C-terminal domain NRL00_16680 PF00501 AMP-binding enzyme NRL00_16690 PF00550 Phosphopantetheine attachment site NRL00_16695 PF00550 Phosphopantetheine attachment site NRL00_16730 PF00034 Cytochrome c NRL00_16730 PF03150 Di-haem cytochrome c peroxidase NRL00_16735 PF00194 Eukaryotic-type carbonic anhydrase NRL00_16740 PF04227 Indigoidine synthase A like protein NRL00_16745 PF00294 pfkB family carbohydrate kinase NRL00_16765 PF00582 Universal stress protein family NRL00_16780 PF01472 PUA domain NRL00_16780 PF00696 Amino acid kinase family NRL00_16785 PF07417 Sigma factor-binding transcriptional regulator Crl NRL00_16790 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NRL00_16795 PF00156 Phosphoribosyl transferase domain NRL00_16800 PF01546 Peptidase family M20/M25/M40 NRL00_16800 PF07687 Peptidase dimerisation domain NRL00_16805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_16805 PF00005 ABC transporter NRL00_16810 PF00005 ABC transporter NRL00_16810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRL00_16820 PF12911 N-terminal TM domain of oligopeptide transport permease C NRL00_16820 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_16825 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_16830 PF00593 TonB dependent receptor NRL00_16830 PF07715 TonB-dependent Receptor Plug Domain NRL00_16840 PF01618 MotA/TolQ/ExbB proton channel family NRL00_16845 PF01618 MotA/TolQ/ExbB proton channel family NRL00_16850 PF02472 Biopolymer transport protein ExbD/TolR NRL00_16865 PF00704 Glycosyl hydrolases family 18 NRL00_16865 PF06483 Chitinase C NRL00_16900 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL00_16905 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL00_16910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_16910 PF00672 HAMP domain NRL00_16920 PF00313 'Cold-shock' DNA-binding domain NRL00_16940 PF00929 Exonuclease NRL00_16945 PF03193 RsgA GTPase NRL00_16950 PF02666 Phosphatidylserine decarboxylase NRL00_16955 PF09905 DNA-binding protein VF530 NRL00_16975 PF03707 Bacterial signalling protein N terminal repeat NRL00_16975 PF00990 Diguanylate cyclase, GGDEF domain NRL00_16975 PF00563 EAL domain NRL00_16980 PF06877 Regulator of ribonuclease activity B NRL00_16985 PF05547 Immune inhibitor A peptidase M6 NRL00_16985 PF00801 PKD domain NRL00_17005 PF00561 alpha/beta hydrolase fold NRL00_17010 PF00005 ABC transporter NRL00_17010 PF00664 ABC transporter transmembrane region NRL00_17015 PF06004 Bacterial protein of unknown function (DUF903) NRL00_17020 PF00082 Subtilase family NRL00_17020 PF05922 Peptidase inhibitor I9 NRL00_17025 PF00581 Rhodanese-like domain NRL00_17030 PF04960 Glutaminase NRL00_17035 PF04320 Protein with unknown function (DUF469) NRL00_17040 PF02390 Putative methyltransferase NRL00_17045 PF01483 Proprotein convertase P-domain NRL00_17045 PF04389 Peptidase family M28 NRL00_17050 PF00155 Aminotransferase class I and II NRL00_17055 PF00563 EAL domain NRL00_17055 PF12792 CSS motif domain associated with EAL NRL00_17060 PF08338 Domain of unknown function (DUF1731) NRL00_17060 PF01370 NAD dependent epimerase/dehydratase family NRL00_17070 PF00005 ABC transporter NRL00_17075 PF13472 GDSL-like Lipase/Acylhydrolase family NRL00_17080 PF00072 Response regulator receiver domain NRL00_17080 PF01584 CheW-like domain NRL00_17100 PF06826 Predicted Permease Membrane Region NRL00_17100 PF02080 TrkA-C domain NRL00_17105 PF03006 Haemolysin-III related NRL00_17110 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRL00_17115 PF04279 Intracellular septation protein A NRL00_17120 PF03795 YCII-related domain NRL00_17125 PF00459 Inositol monophosphatase family NRL00_17135 PF00483 Nucleotidyl transferase NRL00_17140 PF00854 POT family NRL00_17145 PF00072 Response regulator receiver domain NRL00_17175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_17180 PF02321 Outer membrane efflux protein NRL00_17185 PF01207 Dihydrouridine synthase (Dus) NRL00_17190 PF02954 Bacterial regulatory protein, Fis family NRL00_17220 PF01521 Iron-sulphur cluster biosynthesis NRL00_17230 PF00654 Voltage gated chloride channel NRL00_17235 PF00202 Aminotransferase class-III NRL00_17250 PF01569 PAP2 superfamily NRL00_17260 PF11849 Domain of unknown function (DUF3369) NRL00_17270 PF00893 Small Multidrug Resistance protein NRL00_17275 PF00893 Small Multidrug Resistance protein NRL00_17280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL00_17285 PF14814 Bifunctional transglycosylase second domain NRL00_17285 PF00905 Penicillin binding protein transpeptidase domain NRL00_17285 PF00912 Transglycosylase NRL00_17290 PF00270 DEAD/DEAH box helicase NRL00_17290 PF04408 Helicase associated domain (HA2) NRL00_17290 PF00271 Helicase conserved C-terminal domain NRL00_17290 PF08482 ATP-dependent helicase C-terminal NRL00_17300 PF03749 Sugar fermentation stimulation protein RE domain NRL00_17300 PF17746 SfsA N-terminal OB domain NRL00_17305 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRL00_17310 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRL00_17315 PF12626 Polymerase A arginine-rich C-terminus NRL00_17315 PF12627 Probable RNA and SrmB- binding site of polymerase A NRL00_17315 PF01743 Poly A polymerase head domain NRL00_17320 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRL00_17325 PF02548 Ketopantoate hydroxymethyltransferase NRL00_17330 PF02569 Pantoate-beta-alanine ligase NRL00_17360 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRL00_17365 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NRL00_17370 PF01061 ABC-2 type transporter NRL00_17375 PF00005 ABC transporter NRL00_17380 PF00156 Phosphoribosyl transferase domain NRL00_17385 PF00440 Bacterial regulatory proteins, tetR family NRL00_17390 PF02441 Flavoprotein NRL00_17395 PF01225 Mur ligase family, catalytic domain NRL00_17395 PF02875 Mur ligase family, glutamate ligase domain NRL00_17395 PF08245 Mur ligase middle domain NRL00_17400 PF00719 Inorganic pyrophosphatase NRL00_17415 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NRL00_17430 PF00005 ABC transporter NRL00_17450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_17450 PF08447 PAS fold NRL00_17480 PF03600 Citrate transporter NRL00_17480 PF02080 TrkA-C domain NRL00_17485 PF00009 Elongation factor Tu GTP binding domain NRL00_17490 PF01507 Phosphoadenosine phosphosulfate reductase family NRL00_17495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL00_17495 PF10414 Sirohaem synthase dimerisation region NRL00_17495 PF14824 Sirohaem biosynthesis protein central NRL00_17500 PF16200 C-terminal region of band_7 NRL00_17500 PF01145 SPFH domain / Band 7 family NRL00_17505 PF01957 NfeD-like C-terminal, partner-binding NRL00_17510 PF01380 SIS domain NRL00_17510 PF00571 CBS domain NRL00_17515 PF12848 ABC transporter NRL00_17515 PF00005 ABC transporter NRL00_17525 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NRL00_17550 PF00474 Sodium:solute symporter family NRL00_17555 PF03734 L,D-transpeptidase catalytic domain NRL00_17555 PF17969 L,D-transpeptidase C-terminal domain NRL00_17560 PF00924 Mechanosensitive ion channel NRL00_17565 PF00871 Acetokinase family NRL00_17570 PF04074 YhcH/YjgK/YiaL NRL00_17580 PF00394 Multicopper oxidase NRL00_17580 PF07731 Multicopper oxidase NRL00_17580 PF07732 Multicopper oxidase NRL00_17585 PF01177 Asp/Glu/Hydantoin racemase NRL00_17590 PF01810 LysE type translocator NRL00_17600 PF00392 Bacterial regulatory proteins, gntR family NRL00_17600 PF00155 Aminotransferase class I and II NRL00_17625 PF00209 Sodium:neurotransmitter symporter family NRL00_17635 PF00209 Sodium:neurotransmitter symporter family NRL00_17655 PF07690 Major Facilitator Superfamily NRL00_17665 PF01037 Lrp/AsnC ligand binding domain NRL00_17680 PF01047 MarR family NRL00_17685 PF00107 Zinc-binding dehydrogenase NRL00_17685 PF16884 N-terminal domain of oxidoreductase NRL00_17690 PF00293 NUDIX domain NRL00_17700 PF01641 SelR domain NRL00_17705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL00_17705 PF00128 Alpha amylase, catalytic domain NRL00_17710 PF02806 Alpha amylase, C-terminal all-beta domain NRL00_17710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRL00_17710 PF00128 Alpha amylase, catalytic domain NRL00_17715 PF02446 4-alpha-glucanotransferase NRL00_17720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRL00_17720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRL00_17725 PF01263 Aldose 1-epimerase NRL00_17730 PF02445 Quinolinate synthetase A protein NRL00_17735 PF00672 HAMP domain NRL00_17735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_17810 PF13174 Tetratricopeptide repeat NRL00_17810 PF16331 TolA binding protein trimerisation NRL00_17815 PF00691 OmpA family NRL00_17820 PF04052 TolB amino-terminal domain NRL00_17820 PF07676 WD40-like Beta Propeller Repeat NRL00_17830 PF02472 Biopolymer transport protein ExbD/TolR NRL00_17835 PF01618 MotA/TolQ/ExbB proton channel family NRL00_17840 PF03061 Thioesterase superfamily NRL00_17845 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) NRL00_17850 PF08173 Membrane bound YbgT-like protein NRL00_17855 PF02322 Cytochrome bd terminal oxidase subunit II NRL00_17860 PF01654 Cytochrome bd terminal oxidase subunit I NRL00_17865 PF05496 Holliday junction DNA helicase RuvB P-loop domain NRL00_17865 PF05491 RuvB C-terminal winged helix domain NRL00_17865 PF17864 RuvB AAA lid domain NRL00_17870 PF07499 RuvA, C-terminal domain NRL00_17870 PF01330 RuvA N terminal domain NRL00_17875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_17875 PF00672 HAMP domain NRL00_17880 PF03129 Anticodon binding domain NRL00_17880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRL00_17880 PF04073 Aminoacyl-tRNA editing domain NRL00_17885 PF00106 short chain dehydrogenase NRL00_17900 PF00378 Enoyl-CoA hydratase/isomerase NRL00_17905 PF10952 Protein of unknown function (DUF2753) NRL00_17910 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_17920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRL00_17935 PF02594 Uncharacterised ACR, YggU family COG1872 NRL00_17940 PF02325 YGGT family NRL00_17945 PF03807 NADP oxidoreductase coenzyme F420-dependent NRL00_17945 PF14748 Pyrroline-5-carboxylate reductase dimerisation NRL00_17950 PF01168 Alanine racemase, N-terminal domain NRL00_17955 PF00437 Type II/IV secretion system protein NRL00_17960 PF00437 Type II/IV secretion system protein NRL00_17965 PF03883 Peroxide stress protein YaaA NRL00_17970 PF00270 DEAD/DEAH box helicase NRL00_17970 PF00271 Helicase conserved C-terminal domain NRL00_17975 PF05175 Methyltransferase small domain NRL00_17980 PF05525 Branched-chain amino acid transport protein NRL00_17985 PF05525 Branched-chain amino acid transport protein NRL00_18000 PF01475 Ferric uptake regulator family NRL00_18005 PF01207 Dihydrouridine synthase (Dus) NRL00_18020 PF00216 Bacterial DNA-binding protein NRL00_18030 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NRL00_18035 PF07238 PilZ domain NRL00_18040 PF18073 Rubredoxin metal binding domain NRL00_18055 PF18429 Domain of unknown function (DUF5609) NRL00_18065 PF00563 EAL domain NRL00_18065 PF00990 Diguanylate cyclase, GGDEF domain NRL00_18065 PF05231 MASE1 NRL00_18065 PF08447 PAS fold NRL00_18065 PF08448 PAS fold NRL00_18065 PF13426 PAS domain NRL00_18070 PF01048 Phosphorylase superfamily NRL00_18075 PF01676 Metalloenzyme superfamily NRL00_18080 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NRL00_18080 PF02885 Glycosyl transferase family, helical bundle domain NRL00_18080 PF00591 Glycosyl transferase family, a/b domain NRL00_18085 PF01791 DeoC/LacD family aldolase NRL00_18095 PF01773 Na+ dependent nucleoside transporter N-terminus NRL00_18095 PF07662 Na+ dependent nucleoside transporter C-terminus NRL00_18095 PF07670 Nucleoside recognition NRL00_18100 PF01026 TatD related DNase NRL00_18105 PF07963 Prokaryotic N-terminal methylation motif NRL00_18120 PF05958 tRNA (Uracil-5-)-methyltransferase NRL00_18120 PF01938 TRAM domain NRL00_18125 PF00909 Ammonium Transporter Family NRL00_18140 PF03739 Lipopolysaccharide export system permease LptF/LptG NRL00_18145 PF03739 Lipopolysaccharide export system permease LptF/LptG NRL00_18150 PF02789 Cytosol aminopeptidase family, N-terminal domain NRL00_18150 PF00883 Cytosol aminopeptidase family, catalytic domain NRL00_18155 PF04364 DNA polymerase III chi subunit, HolC NRL00_18160 PF08264 Anticodon-binding domain of tRNA NRL00_18160 PF00133 tRNA synthetases class I (I, L, M and V) NRL00_18160 PF10458 Valyl tRNA synthetase tRNA binding arm NRL00_18165 PF00571 CBS domain NRL00_18165 PF03471 Transporter associated domain NRL00_18165 PF01595 Cyclin M transmembrane N-terminal domain NRL00_18170 PF09335 SNARE associated Golgi protein NRL00_18175 PF00768 D-alanyl-D-alanine carboxypeptidase NRL00_18210 PF02599 Global regulator protein family NRL00_18215 PF01842 ACT domain NRL00_18215 PF00696 Amino acid kinase family NRL00_18215 PF13840 ACT domain NRL00_18220 PF01411 tRNA synthetases class II (A) NRL00_18220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRL00_18220 PF02272 DHHA1 domain NRL00_18225 PF02631 RecX family NRL00_18230 PF00154 recA bacterial DNA recombination protein NRL00_18235 PF02464 Competence-damaged protein NRL00_18240 PF00488 MutS domain V NRL00_18240 PF01624 MutS domain I NRL00_18240 PF05188 MutS domain II NRL00_18240 PF05192 MutS domain III NRL00_18240 PF05190 MutS family domain IV NRL00_18245 PF02028 BCCT, betaine/carnitine/choline family transporter NRL00_18260 PF04222 Protein of unknown function (DUF416) NRL00_18265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL00_18270 PF01551 Peptidase family M23 NRL00_18270 PF08525 Opacity-associated protein A N-terminal motif NRL00_18270 PF01476 LysM domain NRL00_18290 PF01297 Zinc-uptake complex component A periplasmic NRL00_18295 PF00005 ABC transporter NRL00_18300 PF00950 ABC 3 transport family NRL00_18305 PF03466 LysR substrate binding domain NRL00_18305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_18310 PF00892 EamA-like transporter family NRL00_18315 PF03167 Uracil DNA glycosylase superfamily NRL00_18320 PF00892 EamA-like transporter family NRL00_18330 PF01541 GIY-YIG catalytic domain NRL00_18345 PF04012 PspA/IM30 family NRL00_18350 PF01553 Acyltransferase NRL00_18370 PF00578 AhpC/TSA family NRL00_18380 PF00226 DnaJ domain NRL00_18380 PF01556 DnaJ C terminal domain NRL00_18380 PF00684 DnaJ central domain NRL00_18420 PF02600 Disulfide bond formation protein DsbB NRL00_18425 PF07690 Major Facilitator Superfamily NRL00_18430 PF03466 LysR substrate binding domain NRL00_18430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_18445 PF00521 DNA gyrase/topoisomerase IV, subunit A NRL00_18445 PF03989 DNA gyrase C-terminal domain, beta-propeller NRL00_18450 PF00204 DNA gyrase B NRL00_18450 PF01751 Toprim domain NRL00_18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_18450 PF00986 DNA gyrase B subunit, carboxyl terminus NRL00_18455 PF04632 Fusaric acid resistance protein family NRL00_18460 PF00529 HlyD membrane-fusion protein of T1SS NRL00_18460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRL00_18465 PF07869 Protein of unknown function (DUF1656) NRL00_18475 PF00293 NUDIX domain NRL00_18480 PF05728 Uncharacterised protein family (UPF0227) NRL00_18485 PF00149 Calcineurin-like phosphoesterase NRL00_18490 PF06853 Protein of unknown function (DUF1249) NRL00_18495 PF00293 NUDIX domain NRL00_18500 PF02321 Outer membrane efflux protein NRL00_18505 PF01467 Cytidylyltransferase-like NRL00_18505 PF00294 pfkB family carbohydrate kinase NRL00_18510 PF03279 Bacterial lipid A biosynthesis acyltransferase NRL00_18525 PF01865 Protein of unknown function DUF47 NRL00_18530 PF01384 Phosphate transporter family NRL00_18535 PF04073 Aminoacyl-tRNA editing domain NRL00_18555 PF00392 Bacterial regulatory proteins, gntR family NRL00_18555 PF00155 Aminotransferase class I and II NRL00_18565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_18565 PF03466 LysR substrate binding domain NRL00_18570 PF03788 LrgA family NRL00_18575 PF04172 LrgB-like family NRL00_18590 PF12627 Probable RNA and SrmB- binding site of polymerase A NRL00_18590 PF01743 Poly A polymerase head domain NRL00_18590 PF01966 HD domain NRL00_18595 PF01471 Putative peptidoglycan binding domain NRL00_18595 PF13401 AAA domain NRL00_18600 PF16537 Type II secretion system protein B NRL00_18605 PF10576 Iron-sulfur binding domain of endonuclease III NRL00_18605 PF00730 HhH-GPD superfamily base excision DNA repair protein NRL00_18605 PF14815 NUDIX domain NRL00_18605 PF00633 Helix-hairpin-helix motif NRL00_18610 PF04362 Bacterial Fe(2+) trafficking NRL00_18615 PF01464 Transglycosylase SLT domain NRL00_18615 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NRL00_18620 PF04076 Bacterial OB fold (BOF) protein NRL00_18625 PF00657 GDSL-like Lipase/Acylhydrolase NRL00_18635 PF01389 OmpA-like transmembrane domain NRL00_18635 PF00691 OmpA family NRL00_18640 PF03886 ABC-type transport auxiliary lipoprotein component NRL00_18645 PF02470 MlaD protein NRL00_18650 PF04403 Paraquat-inducible protein A NRL00_18655 PF17209 Hfq protein NRL00_18660 PF13419 Haloacid dehalogenase-like hydrolase NRL00_18670 PF00360 Phytochrome region NRL00_18670 PF00990 Diguanylate cyclase, GGDEF domain NRL00_18670 PF01590 GAF domain NRL00_18670 PF00563 EAL domain NRL00_18675 PF00701 Dihydrodipicolinate synthetase family NRL00_18680 PF05175 Methyltransferase small domain NRL00_18680 PF08468 Methyltransferase small domain N-terminal NRL00_18685 PF00483 Nucleotidyl transferase NRL00_18690 PF08323 Starch synthase catalytic domain NRL00_18690 PF00534 Glycosyl transferases group 1 NRL00_18730 PF03553 Na+/H+ antiporter family NRL00_18735 PF03466 LysR substrate binding domain NRL00_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_18740 PF13416 Bacterial extracellular solute-binding protein NRL00_18745 PF08402 TOBE domain NRL00_18745 PF00005 ABC transporter NRL00_18750 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_18755 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_18760 PF00171 Aldehyde dehydrogenase family NRL00_18785 PF12464 Maltose acetyltransferase NRL00_18785 PF14602 Hexapeptide repeat of succinyl-transferase NRL00_18790 PF11941 Domain of unknown function (DUF3459) NRL00_18790 PF00128 Alpha amylase, catalytic domain NRL00_18795 PF00367 phosphotransferase system, EIIB NRL00_18795 PF02378 Phosphotransferase system, EIIC NRL00_18800 PF00356 Bacterial regulatory proteins, lacI family NRL00_18815 PF00710 Asparaginase, N-terminal NRL00_18815 PF17763 Glutaminase/Asparaginase C-terminal domain NRL00_18830 PF02142 MGS-like domain NRL00_18840 PF00210 Ferritin-like domain NRL00_18855 PF08351 Domain of unknown function (DUF1726) NRL00_18855 PF13718 GNAT acetyltransferase 2 NRL00_18855 PF05127 Helicase NRL00_18855 PF17176 tRNA-binding domain NRL00_18860 PF00106 short chain dehydrogenase NRL00_18865 PF01584 CheW-like domain NRL00_18865 PF00072 Response regulator receiver domain NRL00_18870 PF07670 Nucleoside recognition NRL00_18905 PF02660 Glycerol-3-phosphate acyltransferase NRL00_18910 PF02152 Dihydroneopterin aldolase NRL00_18915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRL00_18925 PF07690 Major Facilitator Superfamily NRL00_18930 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRL00_18930 PF07683 Cobalamin synthesis protein cobW C-terminal domain NRL00_18935 PF04030 D-arabinono-1,4-lactone oxidase NRL00_18935 PF01565 FAD binding domain NRL00_18940 PF01810 LysE type translocator NRL00_18945 PF03466 LysR substrate binding domain NRL00_18945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_18950 PF00330 Aconitase family (aconitate hydratase) NRL00_18950 PF06434 Aconitate hydratase 2 N-terminus NRL00_18950 PF11791 Aconitate B N-terminal domain NRL00_18955 PF01734 Patatin-like phospholipase NRL00_18960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_18960 PF00672 HAMP domain NRL00_18960 PF12729 Four helix bundle sensory module for signal transduction NRL00_18965 PF00672 HAMP domain NRL00_18965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_18965 PF12729 Four helix bundle sensory module for signal transduction NRL00_18975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL00_18975 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_18980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRL00_18980 PF02817 e3 binding domain NRL00_18980 PF00364 Biotin-requiring enzyme NRL00_18985 PF00456 Transketolase, thiamine diphosphate binding domain NRL00_18985 PF17831 Pyruvate dehydrogenase E1 component middle domain NRL00_18990 PF00392 Bacterial regulatory proteins, gntR family NRL00_18990 PF07729 FCD domain NRL00_18995 PF01510 N-acetylmuramoyl-L-alanine amidase NRL00_19005 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NRL00_19005 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NRL00_19015 PF00437 Type II/IV secretion system protein NRL00_19015 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRL00_19020 PF00482 Type II secretion system (T2SS), protein F NRL00_19025 PF06750 Bacterial Peptidase A24 N-terminal domain NRL00_19025 PF01478 Type IV leader peptidase family NRL00_19030 PF01121 Dephospho-CoA kinase NRL00_19035 PF07072 Cell division protein NRL00_19040 PF03884 DNA gyrase inhibitor YacG NRL00_19045 PF00293 NUDIX domain NRL00_19055 PF07517 SecA DEAD-like domain NRL00_19055 PF07516 SecA Wing and Scaffold domain NRL00_19055 PF01043 SecA preprotein cross-linking domain NRL00_19055 PF02810 SEC-C motif NRL00_19065 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NRL00_19070 PF00091 Tubulin/FtsZ family, GTPase domain NRL00_19070 PF12327 FtsZ family, C-terminal domain NRL00_19075 PF02491 SHS2 domain inserted in FTSA NRL00_19080 PF08478 POTRA domain, FtsQ-type NRL00_19080 PF03799 Cell division protein FtsQ NRL00_19085 PF01225 Mur ligase family, catalytic domain NRL00_19085 PF02875 Mur ligase family, glutamate ligase domain NRL00_19085 PF08245 Mur ligase middle domain NRL00_19090 PF04101 Glycosyltransferase family 28 C-terminal domain NRL00_19090 PF03033 Glycosyltransferase family 28 N-terminal domain NRL00_19095 PF01098 Cell cycle protein NRL00_19100 PF08245 Mur ligase middle domain NRL00_19100 PF02875 Mur ligase family, glutamate ligase domain NRL00_19105 PF00953 Glycosyl transferase family 4 NRL00_19105 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NRL00_19110 PF01225 Mur ligase family, catalytic domain NRL00_19110 PF02875 Mur ligase family, glutamate ligase domain NRL00_19110 PF08245 Mur ligase middle domain NRL00_19115 PF01225 Mur ligase family, catalytic domain NRL00_19115 PF02875 Mur ligase family, glutamate ligase domain NRL00_19115 PF08245 Mur ligase middle domain NRL00_19120 PF03717 Penicillin-binding Protein dimerisation domain NRL00_19120 PF00905 Penicillin binding protein transpeptidase domain NRL00_19125 PF04999 Cell division protein FtsL NRL00_19130 PF01795 MraW methylase family NRL00_19135 PF02381 MraZ protein, putative antitoxin-like NRL00_19145 PF01476 LysM domain NRL00_19145 PF01464 Transglycosylase SLT domain NRL00_19150 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRL00_19150 PF00691 OmpA family NRL00_19155 PF01618 MotA/TolQ/ExbB proton channel family NRL00_19160 PF04542 Sigma-70 region 2 NRL00_19160 PF04545 Sigma-70, region 4 NRL00_19180 PF02561 Flagellar protein FliS NRL00_19185 PF07196 Flagellin hook IN motif NRL00_19185 PF07195 Flagellar hook-associated protein 2 C-terminus NRL00_19185 PF02465 Flagellar hook-associated protein 2 N-terminus NRL00_19190 PF00669 Bacterial flagellin N-terminal helical region NRL00_19190 PF00700 Bacterial flagellin C-terminal helical region NRL00_19195 PF00700 Bacterial flagellin C-terminal helical region NRL00_19195 PF00669 Bacterial flagellin N-terminal helical region NRL00_19210 PF00669 Bacterial flagellin N-terminal helical region NRL00_19215 PF00460 Flagella basal body rod protein NRL00_19215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_19225 PF02119 Flagellar P-ring protein NRL00_19230 PF02107 Flagellar L-ring protein NRL00_19235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_19235 PF00460 Flagella basal body rod protein NRL00_19240 PF00460 Flagella basal body rod protein NRL00_19240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_19245 PF07559 Flagellar basal body protein FlaE NRL00_19245 PF00460 Flagella basal body rod protein NRL00_19245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_19250 PF03963 Flagellar hook capping protein - N-terminal region NRL00_19250 PF13860 FlgD Ig-like domain NRL00_19250 PF13861 FlgD Tudor-like domain NRL00_19255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRL00_19255 PF00460 Flagella basal body rod protein NRL00_19260 PF00460 Flagella basal body rod protein NRL00_19285 PF18269 T3SS EscN ATPase C-terminal domain NRL00_19285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL00_19295 PF14842 FliG N-terminal domain NRL00_19295 PF14841 FliG middle domain NRL00_19295 PF01706 FliG C-terminal domain NRL00_19300 PF08345 Flagellar M-ring protein C-terminal NRL00_19300 PF01514 Secretory protein of YscJ/FliF family NRL00_19305 PF02049 Flagellar hook-basal body complex protein FliE NRL00_19310 PF02954 Bacterial regulatory protein, Fis family NRL00_19310 PF00072 Response regulator receiver domain NRL00_19310 PF00158 Sigma-54 interaction domain NRL00_19315 PF00771 FHIPEP family NRL00_19320 PF01312 FlhB HrpN YscU SpaS Family NRL00_19325 PF01311 Bacterial export proteins, family 1 NRL00_19330 PF01313 Bacterial export proteins, family 3 NRL00_19335 PF00813 FliP family NRL00_19340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRL00_19355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL00_19360 PF04348 LppC putative lipoprotein NRL00_19365 PF02021 Uncharacterised protein family UPF0102 NRL00_19370 PF13580 SIS domain NRL00_19375 PF04972 BON domain NRL00_19380 PF04386 Stringent starvation protein B NRL00_19385 PF02798 Glutathione S-transferase, N-terminal domain NRL00_19385 PF00043 Glutathione S-transferase, C-terminal domain NRL00_19390 PF02167 Cytochrome C1 family NRL00_19395 PF00032 Cytochrome b(C-terminal)/b6/petD NRL00_19395 PF00033 Cytochrome b/b6/petB NRL00_19400 PF00355 Rieske [2Fe-2S] domain NRL00_19400 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NRL00_19405 PF00380 Ribosomal protein S9/S16 NRL00_19410 PF00572 Ribosomal protein L13 NRL00_19415 PF03969 AFG1-like ATPase NRL00_19425 PF13180 PDZ domain NRL00_19425 PF00595 PDZ domain NRL00_19430 PF13180 PDZ domain NRL00_19460 PF01979 Amidohydrolase family NRL00_19465 PF03841 L-seryl-tRNA selenium transferase NRL00_19470 PF07071 KDGP aldolase NRL00_19475 PF05043 Mga helix-turn-helix domain NRL00_19475 PF08279 HTH domain NRL00_19475 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL00_19475 PF00874 PRD domain NRL00_19480 PF00381 PTS HPr component phosphorylation site NRL00_19485 PF03668 P-loop ATPase protein family NRL00_19490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRL00_19495 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRL00_19500 PF04552 Sigma-54, DNA binding domain NRL00_19500 PF04963 Sigma-54 factor, core binding domain NRL00_19500 PF00309 Sigma-54 factor, Activator interacting domain (AID) NRL00_19505 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRL00_19505 PF00005 ABC transporter NRL00_19510 PF03968 OstA-like protein NRL00_19515 PF06835 Lipopolysaccharide-assembly, LptC-related NRL00_19525 PF00571 CBS domain NRL00_19525 PF01380 SIS domain NRL00_19530 PF00005 ABC transporter NRL00_19535 PF02405 Permease MlaE NRL00_19540 PF02470 MlaD protein NRL00_19545 PF05494 MlaC protein NRL00_19555 PF01722 BolA-like protein NRL00_19560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRL00_19565 PF01523 Putative modulator of DNA gyrase NRL00_19570 PF04751 Protein of unknown function (DUF615) NRL00_19580 PF04363 Protein of unknown function (DUF496) NRL00_19610 PF07883 Cupin domain NRL00_19610 PF01381 Helix-turn-helix NRL00_19615 PF03594 Benzoate membrane transport protein NRL00_19625 PF02219 Methylenetetrahydrofolate reductase NRL00_19640 PF00672 HAMP domain NRL00_19640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_19645 PF03922 OmpW family NRL00_19650 PF00990 Diguanylate cyclase, GGDEF domain NRL00_19655 PF17760 UvrA interaction domain NRL00_19655 PF00005 ABC transporter NRL00_19655 PF17755 UvrA DNA-binding domain NRL00_19660 PF00196 Bacterial regulatory proteins, luxR family NRL00_19665 PF00436 Single-strand binding protein family NRL00_19680 PF16916 Dimerisation domain of Zinc Transporter NRL00_19680 PF01545 Cation efflux family NRL00_19690 PF00313 'Cold-shock' DNA-binding domain NRL00_19695 PF00593 TonB dependent receptor NRL00_19695 PF07715 TonB-dependent Receptor Plug Domain NRL00_19700 PF00360 Phytochrome region NRL00_19700 PF00990 Diguanylate cyclase, GGDEF domain NRL00_19700 PF01590 GAF domain NRL00_19700 PF00563 EAL domain NRL00_19705 PF00672 HAMP domain NRL00_19705 PF00512 His Kinase A (phospho-acceptor) domain NRL00_19705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_19710 PF00072 Response regulator receiver domain NRL00_19710 PF00486 Transcriptional regulatory protein, C terminal NRL00_19735 PF00990 Diguanylate cyclase, GGDEF domain NRL00_19745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRL00_19755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_19755 PF03466 LysR substrate binding domain NRL00_19765 PF13538 UvrD-like helicase C-terminal domain NRL00_19770 PF12705 PD-(D/E)XK nuclease superfamily NRL00_19770 PF00580 UvrD/REP helicase N-terminal domain NRL00_19770 PF13361 UvrD-like helicase C-terminal domain NRL00_19775 PF17946 RecC C-terminal domain NRL00_19780 PF07681 DoxX NRL00_19785 PF02678 Pirin NRL00_19785 PF17954 Quercetinase C-terminal cupin domain NRL00_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_19795 PF03466 LysR substrate binding domain NRL00_19805 PF07702 UTRA domain NRL00_19805 PF00392 Bacterial regulatory proteins, gntR family NRL00_19820 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_19830 PF08402 TOBE domain NRL00_19830 PF00005 ABC transporter NRL00_19840 PF00990 Diguanylate cyclase, GGDEF domain NRL00_19860 PF00583 Acetyltransferase (GNAT) family NRL00_19885 PF01569 PAP2 superfamily NRL00_19890 PF01594 AI-2E family transporter NRL00_19895 PF00106 short chain dehydrogenase NRL00_19900 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRL00_19905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_19905 PF03466 LysR substrate binding domain NRL00_19910 PF00158 Sigma-54 interaction domain NRL00_19910 PF00989 PAS fold NRL00_19910 PF02954 Bacterial regulatory protein, Fis family NRL00_19915 PF00465 Iron-containing alcohol dehydrogenase NRL00_19920 PF00381 PTS HPr component phosphorylation site NRL00_19920 PF00391 PEP-utilising enzyme, mobile domain NRL00_19920 PF05524 PEP-utilising enzyme, N-terminal NRL00_19920 PF03610 PTS system fructose IIA component NRL00_19925 PF02734 DAK2 domain NRL00_19930 PF02733 Dak1 domain NRL00_19935 PF00860 Permease family NRL00_19980 PF03144 Elongation factor Tu domain 2 NRL00_19980 PF00009 Elongation factor Tu GTP binding domain NRL00_19980 PF03143 Elongation factor Tu C-terminal domain NRL00_19985 PF03764 Elongation factor G, domain IV NRL00_19985 PF00009 Elongation factor Tu GTP binding domain NRL00_19985 PF03144 Elongation factor Tu domain 2 NRL00_19985 PF00679 Elongation factor G C-terminus NRL00_19985 PF14492 Elongation Factor G, domain II NRL00_19990 PF00177 Ribosomal protein S7p/S5e NRL00_19995 PF00164 Ribosomal protein S12/S23 NRL00_20000 PF04077 DsrH like protein NRL00_20005 PF02635 DsrE/DsrF-like family NRL00_20010 PF02635 DsrE/DsrF-like family NRL00_20015 PF01042 Endoribonuclease L-PSP NRL00_20020 PF08348 YheO-like PAS domain NRL00_20020 PF13309 HTH domain NRL00_20025 PF04997 RNA polymerase Rpb1, domain 1 NRL00_20025 PF00623 RNA polymerase Rpb1, domain 2 NRL00_20025 PF04983 RNA polymerase Rpb1, domain 3 NRL00_20025 PF05000 RNA polymerase Rpb1, domain 4 NRL00_20025 PF04998 RNA polymerase Rpb1, domain 5 NRL00_20030 PF00562 RNA polymerase Rpb2, domain 6 NRL00_20030 PF04563 RNA polymerase beta subunit NRL00_20030 PF04561 RNA polymerase Rpb2, domain 2 NRL00_20030 PF04560 RNA polymerase Rpb2, domain 7 NRL00_20030 PF10385 RNA polymerase beta subunit external 1 domain NRL00_20030 PF04565 RNA polymerase Rpb2, domain 3 NRL00_20035 PF00542 Ribosomal protein L7/L12 C-terminal domain NRL00_20035 PF16320 Ribosomal protein L7/L12 dimerisation domain NRL00_20040 PF00466 Ribosomal protein L10 NRL00_20045 PF00687 Ribosomal protein L1p/L10e family NRL00_20050 PF03946 Ribosomal protein L11, N-terminal domain NRL00_20050 PF00298 Ribosomal protein L11, RNA binding domain NRL00_20055 PF00467 KOW motif NRL00_20055 PF02357 Transcription termination factor nusG NRL00_20060 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NRL00_20070 PF03143 Elongation factor Tu C-terminal domain NRL00_20070 PF03144 Elongation factor Tu domain 2 NRL00_20070 PF00009 Elongation factor Tu GTP binding domain NRL00_20085 PF00485 Phosphoribulokinase / Uridine kinase family NRL00_20090 PF02237 Biotin protein ligase C terminal domain NRL00_20090 PF03099 Biotin/lipoate A/B protein ligase family NRL00_20090 PF08279 HTH domain NRL00_20095 PF01565 FAD binding domain NRL00_20095 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NRL00_20105 PF02386 Cation transport protein NRL00_20110 PF12852 Cupin NRL00_20110 PF12833 Helix-turn-helix domain NRL00_20125 PF01131 DNA topoisomerase NRL00_20125 PF01751 Toprim domain NRL00_20130 PF03264 NapC/NirT cytochrome c family, N-terminal region NRL00_20135 PF00384 Molybdopterin oxidoreductase NRL00_20135 PF18364 Molybdopterin oxidoreductase N-terminal domain NRL00_20135 PF01568 Molydopterin dinucleotide binding domain NRL00_20145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_20150 PF00072 Response regulator receiver domain NRL00_20150 PF00486 Transcriptional regulatory protein, C terminal NRL00_20165 PF01794 Ferric reductase like transmembrane component NRL00_20170 PF00174 Oxidoreductase molybdopterin binding domain NRL00_20175 PF06496 Protein of unknown function (DUF1097) NRL00_20180 PF00158 Sigma-54 interaction domain NRL00_20180 PF00072 Response regulator receiver domain NRL00_20190 PF00512 His Kinase A (phospho-acceptor) domain NRL00_20190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_20210 PF00478 IMP dehydrogenase / GMP reductase domain NRL00_20210 PF00571 CBS domain NRL00_20215 PF10063 Uncharacterized integral membrane protein (DUF2301) NRL00_20225 PF01037 Lrp/AsnC ligand binding domain NRL00_20230 PF03590 Aspartate-ammonia ligase NRL00_20240 PF17871 AAA lid domain NRL00_20240 PF02861 Clp amino terminal domain, pathogenicity island component NRL00_20240 PF10431 C-terminal, D2-small domain, of ClpB protein NRL00_20240 PF07724 AAA domain (Cdc48 subfamily) NRL00_20240 PF00004 ATPase family associated with various cellular activities (AAA) NRL00_20245 PF02578 Multi-copper polyphenol oxidoreductase laccase NRL00_20250 PF00849 RNA pseudouridylate synthase NRL00_20250 PF01479 S4 domain NRL00_20255 PF13525 Outer membrane lipoprotein NRL00_20260 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_20260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRL00_20265 PF00375 Sodium:dicarboxylate symporter family NRL00_20270 PF03313 Serine dehydratase alpha chain NRL00_20280 PF02233 NAD(P) transhydrogenase beta subunit NRL00_20285 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRL00_20285 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRL00_20285 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRL00_20290 PF00465 Iron-containing alcohol dehydrogenase NRL00_20295 PF12833 Helix-turn-helix domain NRL00_20295 PF06719 AraC-type transcriptional regulator N-terminus NRL00_20300 PF08212 Lipocalin-like domain NRL00_20305 PF00672 HAMP domain NRL00_20305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_20305 PF02743 Cache domain NRL00_20315 PF02666 Phosphatidylserine decarboxylase NRL00_20335 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL00_20335 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL00_20340 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NRL00_20340 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NRL00_20345 PF01316 Arginine repressor, DNA binding domain NRL00_20345 PF02863 Arginine repressor, C-terminal domain NRL00_20350 PF03606 C4-dicarboxylate anaerobic carrier NRL00_20355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRL00_20355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRL00_20360 PF00696 Amino acid kinase family NRL00_20385 PF00672 HAMP domain NRL00_20385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_20385 PF02743 Cache domain NRL00_20390 PF02653 Branched-chain amino acid transport system / permease component NRL00_20395 PF00005 ABC transporter NRL00_20400 PF13407 Periplasmic binding protein domain NRL00_20405 PF16353 Domain of unknown function(DUF4981) NRL00_20405 PF00703 Glycosyl hydrolases family 2 NRL00_20405 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRL00_20405 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRL00_20405 PF02929 Beta galactosidase small chain NRL00_20410 PF00356 Bacterial regulatory proteins, lacI family NRL00_20415 PF16363 GDP-mannose 4,6 dehydratase NRL00_20420 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NRL00_20420 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NRL00_20425 PF00288 GHMP kinases N terminal domain NRL00_20425 PF08544 GHMP kinases C terminal NRL00_20425 PF10509 Galactokinase galactose-binding signature NRL00_20430 PF01263 Aldose 1-epimerase NRL00_20435 PF00248 Aldo/keto reductase family NRL00_20440 PF02673 Bacitracin resistance protein BacA NRL00_20445 PF12973 ChrR Cupin-like domain NRL00_20450 PF04545 Sigma-70, region 4 NRL00_20450 PF04542 Sigma-70 region 2 NRL00_20460 PF00750 tRNA synthetases class I (R) NRL00_20460 PF05746 DALR anticodon binding domain NRL00_20460 PF03485 Arginyl tRNA synthetase N terminal domain NRL00_20470 PF00227 Proteasome subunit NRL00_20475 PF00004 ATPase family associated with various cellular activities (AAA) NRL00_20475 PF07724 AAA domain (Cdc48 subfamily) NRL00_20475 PF10431 C-terminal, D2-small domain, of ClpB protein NRL00_20480 PF07690 Major Facilitator Superfamily NRL00_20485 PF03466 LysR substrate binding domain NRL00_20485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRL00_20490 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_20490 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRL00_20490 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRL00_20490 PF04324 BFD-like [2Fe-2S] binding domain NRL00_20490 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRL00_20500 PF13806 Rieske-like [2Fe-2S] domain NRL00_20505 PF01226 Formate/nitrite transporter NRL00_20510 PF10414 Sirohaem synthase dimerisation region NRL00_20510 PF14824 Sirohaem biosynthesis protein central NRL00_20510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRL00_20515 PF00571 CBS domain NRL00_20515 PF03448 MgtE intracellular N domain NRL00_20515 PF01769 Divalent cation transporter NRL00_20520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_20520 PF00672 HAMP domain NRL00_20525 PF03737 Aldolase/RraA NRL00_20530 PF02592 Putative vitamin uptake transporter NRL00_20540 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NRL00_20545 PF00034 Cytochrome c NRL00_20550 PF09382 RQC domain NRL00_20550 PF16124 RecQ zinc-binding NRL00_20550 PF00570 HRDC domain NRL00_20550 PF00271 Helicase conserved C-terminal domain NRL00_20550 PF00270 DEAD/DEAH box helicase NRL00_20555 PF03061 Thioesterase superfamily NRL00_20570 PF03475 3-alpha domain NRL00_20570 PF03473 MOSC domain NRL00_20575 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_20580 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_20585 PF00005 ABC transporter NRL00_20585 PF08402 TOBE domain NRL00_20590 PF13416 Bacterial extracellular solute-binding protein NRL00_20595 PF13416 Bacterial extracellular solute-binding protein NRL00_20600 PF00202 Aminotransferase class-III NRL00_20605 PF00120 Glutamine synthetase, catalytic domain NRL00_20610 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRL00_20625 PF05981 CreA protein NRL00_20630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRL00_20630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRL00_20635 PF00012 Hsp70 protein NRL00_20640 PF03724 META domain NRL00_20650 PF00128 Alpha amylase, catalytic domain NRL00_20650 PF02903 Alpha amylase, N-terminal ig-like domain NRL00_20655 PF02719 Polysaccharide biosynthesis protein NRL00_20660 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRL00_20665 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRL00_20665 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRL00_20665 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRL00_20670 PF01370 NAD dependent epimerase/dehydratase family NRL00_20675 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRL00_20685 PF08889 WbqC-like protein family NRL00_20700 PF13537 Glutamine amidotransferase domain NRL00_20700 PF00733 Asparagine synthase NRL00_20725 PF03275 UDP-galactopyranose mutase NRL00_20730 PF00535 Glycosyl transferase family 2 NRL00_20745 PF00501 AMP-binding enzyme NRL00_20745 PF13193 AMP-binding enzyme C-terminal domain NRL00_20765 PF02348 Cytidylyltransferase NRL00_20775 PF03102 NeuB family NRL00_20775 PF08666 SAF domain NRL00_20795 PF09940 Domain of unknown function (DUF2172) NRL00_20795 PF16254 Domain of unknown function (DUF4910) NRL00_20795 PF16221 winged helix-turn-helix NRL00_20830 PF05958 tRNA (Uracil-5-)-methyltransferase NRL00_20835 PF00072 Response regulator receiver domain NRL00_20835 PF00486 Transcriptional regulatory protein, C terminal NRL00_20840 PF00512 His Kinase A (phospho-acceptor) domain NRL00_20840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_20840 PF00672 HAMP domain NRL00_20850 PF00390 Malic enzyme, N-terminal domain NRL00_20850 PF03949 Malic enzyme, NAD binding domain NRL00_20855 PF11066 Protein of unknown function (DUF2867) NRL00_20855 PF13460 NAD(P)H-binding NRL00_20860 PF01197 Ribosomal protein L31 NRL00_20865 PF00270 DEAD/DEAH box helicase NRL00_20865 PF00271 Helicase conserved C-terminal domain NRL00_20865 PF17764 3′ DNA-binding domain (3′BD) NRL00_20865 PF18074 Primosomal protein N C-terminal domain NRL00_20865 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NRL00_20875 PF00440 Bacterial regulatory proteins, tetR family NRL00_20885 PF01389 OmpA-like transmembrane domain NRL00_20885 PF00691 OmpA family NRL00_20890 PF00585 C-terminal regulatory domain of Threonine dehydratase NRL00_20890 PF00291 Pyridoxal-phosphate dependent enzyme NRL00_20895 PF00920 Dehydratase family NRL00_20900 PF01063 Amino-transferase class IV NRL00_20910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRL00_20910 PF00205 Thiamine pyrophosphate enzyme, central domain NRL00_20910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRL00_20965 PF00149 Calcineurin-like phosphoesterase NRL00_20975 PF00145 C-5 cytosine-specific DNA methylase NRL00_21020 PF00665 Integrase core domain NRL00_21035 PF01553 Acyltransferase NRL00_21040 PF01553 Acyltransferase NRL00_21045 PF04463 Protein of unknown function (DUF523) NRL00_21055 PF00857 Isochorismatase family NRL00_21060 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NRL00_21060 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NRL00_21070 PF00005 ABC transporter NRL00_21075 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_21080 PF01323 DSBA-like thioredoxin domain NRL00_21085 PF01636 Phosphotransferase enzyme family NRL00_21090 PF13746 4Fe-4S dicluster domain NRL00_21090 PF12801 4Fe-4S binding domain NRL00_21090 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NRL00_21095 PF06288 Protein of unknown function (DUF1040) NRL00_21100 PF00990 Diguanylate cyclase, GGDEF domain NRL00_21100 PF00563 EAL domain NRL00_21100 PF01590 GAF domain NRL00_21100 PF00360 Phytochrome region NRL00_21105 PF00376 MerR family regulatory protein NRL00_21105 PF09278 MerR, DNA binding NRL00_21110 PF00403 Heavy-metal-associated domain NRL00_21115 PF00156 Phosphoribosyl transferase domain NRL00_21120 PF03725 3' exoribonuclease family, domain 2 NRL00_21120 PF01138 3' exoribonuclease family, domain 1 NRL00_21125 PF03755 YicC-like family, N-terminal region NRL00_21125 PF08340 Domain of unknown function (DUF1732) NRL00_21130 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRL00_21140 PF00550 Phosphopantetheine attachment site NRL00_21140 PF00668 Condensation domain NRL00_21140 PF00501 AMP-binding enzyme NRL00_21145 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NRL00_21150 PF13193 AMP-binding enzyme C-terminal domain NRL00_21150 PF00668 Condensation domain NRL00_21150 PF00550 Phosphopantetheine attachment site NRL00_21150 PF00975 Thioesterase domain NRL00_21150 PF00501 AMP-binding enzyme NRL00_21160 PF00664 ABC transporter transmembrane region NRL00_21160 PF08021 Siderophore-interacting FAD-binding domain NRL00_21160 PF00005 ABC transporter NRL00_21160 PF04954 Siderophore-interacting protein NRL00_21165 PF00005 ABC transporter NRL00_21170 PF01032 FecCD transport family NRL00_21175 PF01032 FecCD transport family NRL00_21180 PF00005 ABC transporter NRL00_21185 PF01497 Periplasmic binding protein NRL00_21190 PF07715 TonB-dependent Receptor Plug Domain NRL00_21190 PF00593 TonB dependent receptor NRL00_21210 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NRL00_21225 PF01370 NAD dependent epimerase/dehydratase family NRL00_21230 PF08360 QacR-like protein, C-terminal region NRL00_21230 PF00440 Bacterial regulatory proteins, tetR family NRL00_21235 PF00155 Aminotransferase class I and II NRL00_21240 PF08240 Alcohol dehydrogenase GroES-like domain NRL00_21240 PF00107 Zinc-binding dehydrogenase NRL00_21245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRL00_21250 PF03707 Bacterial signalling protein N terminal repeat NRL00_21250 PF13188 PAS domain NRL00_21250 PF00563 EAL domain NRL00_21250 PF00990 Diguanylate cyclase, GGDEF domain NRL00_21255 PF00580 UvrD/REP helicase N-terminal domain NRL00_21255 PF13361 UvrD-like helicase C-terminal domain NRL00_21260 PF00266 Aminotransferase class-V NRL00_21265 PF02657 Fe-S metabolism associated domain NRL00_21270 PF00899 ThiF family NRL00_21300 PF12724 Flavodoxin domain NRL00_21305 PF02386 Cation transport protein NRL00_21310 PF09186 Domain of unknown function (DUF1949) NRL00_21310 PF01205 Uncharacterized protein family UPF0029 NRL00_21315 PF00557 Metallopeptidase family M24 NRL00_21320 PF13193 AMP-binding enzyme C-terminal domain NRL00_21320 PF00501 AMP-binding enzyme NRL00_21325 PF00378 Enoyl-CoA hydratase/isomerase NRL00_21325 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRL00_21325 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRL00_21330 PF00108 Thiolase, N-terminal domain NRL00_21330 PF02803 Thiolase, C-terminal domain NRL00_21335 PF00072 Response regulator receiver domain NRL00_21335 PF00486 Transcriptional regulatory protein, C terminal NRL00_21340 PF00672 HAMP domain NRL00_21340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_21340 PF00512 His Kinase A (phospho-acceptor) domain NRL00_21345 PF01547 Bacterial extracellular solute-binding protein NRL00_21355 PF01206 Sulfurtransferase TusA NRL00_21360 PF01042 Endoribonuclease L-PSP NRL00_21375 PF13488 Glycine zipper NRL00_21375 PF00691 OmpA family NRL00_21380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRL00_21380 PF00672 HAMP domain NRL00_21380 PF02743 Cache domain NRL00_21385 PF03352 Methyladenine glycosylase NRL00_21390 PF02091 Glycyl-tRNA synthetase alpha subunit NRL00_21395 PF05746 DALR anticodon binding domain NRL00_21395 PF02092 Glycyl-tRNA synthetase beta subunit NRL00_21415 PF03496 ADP-ribosyltransferase exoenzyme NRL00_21415 PF03545 Yersinia virulence determinant (YopE) NRL00_21420 PF05932 Tir chaperone protein (CesT) family NRL00_21430 PF03222 Tryptophan/tyrosine permease family NRL00_21435 PF12801 4Fe-4S binding domain NRL00_21445 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRL00_21445 PF18113 Rubredoxin binding C-terminal domain NRL00_21450 PF00258 Flavodoxin NRL00_21450 PF00753 Metallo-beta-lactamase superfamily NRL00_21450 PF00301 Rubredoxin NRL00_21455 PF00158 Sigma-54 interaction domain NRL00_21455 PF01590 GAF domain NRL00_21460 PF07702 UTRA domain NRL00_21460 PF00392 Bacterial regulatory proteins, gntR family NRL00_21465 PF02378 Phosphotransferase system, EIIC NRL00_21465 PF00367 phosphotransferase system, EIIB NRL00_21470 PF11975 Family 4 glycosyl hydrolase C-terminal domain NRL00_21470 PF02056 Family 4 glycosyl hydrolase NRL00_21475 PF00356 Bacterial regulatory proteins, lacI family NRL00_21480 PF13458 Periplasmic binding protein NRL00_21485 PF02653 Branched-chain amino acid transport system / permease component NRL00_21490 PF02653 Branched-chain amino acid transport system / permease component NRL00_21490 PF11862 Domain of unknown function (DUF3382) NRL00_21495 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRL00_21495 PF00005 ABC transporter NRL00_21500 PF00005 ABC transporter NRL00_21515 PF00581 Rhodanese-like domain NRL00_21520 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NRL00_21520 PF01694 Rhomboid family NRL00_21525 PF12262 Bacterial virulence factor lipase N-terminal NRL00_21530 PF04380 Membrane fusogenic activity NRL00_21535 PF00175 Oxidoreductase NAD-binding domain NRL00_21540 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NRL00_21550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL00_21550 PF07498 Rho termination factor, N-terminal domain NRL00_21550 PF07497 Rho termination factor, RNA-binding domain NRL00_21555 PF00085 Thioredoxin NRL00_21560 PF00271 Helicase conserved C-terminal domain NRL00_21560 PF00270 DEAD/DEAH box helicase NRL00_21565 PF02541 Ppx/GppA phosphatase family NRL00_21580 PF04445 Putative SAM-dependent methyltransferase NRL00_21585 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRL00_21590 PF00563 EAL domain NRL00_21590 PF00990 Diguanylate cyclase, GGDEF domain NRL00_21590 PF03707 Bacterial signalling protein N terminal repeat NRL00_21595 PF01432 Peptidase family M3 NRL00_21600 PF00490 Delta-aminolevulinic acid dehydratase NRL00_21605 PF01026 TatD related DNase NRL00_21610 PF00902 Sec-independent protein translocase protein (TatC) NRL00_21615 PF02416 mttA/Hcf106 family NRL00_21620 PF02416 mttA/Hcf106 family NRL00_21625 PF03109 ABC1 family NRL00_21630 PF02036 SCP-2 sterol transfer family NRL00_21635 PF01209 ubiE/COQ5 methyltransferase family NRL00_21640 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NRL00_21645 PF07969 Amidohydrolase family NRL00_21690 PF03544 Gram-negative bacterial TonB protein C-terminal NRL00_21695 PF02472 Biopolymer transport protein ExbD/TolR NRL00_21700 PF01618 MotA/TolQ/ExbB proton channel family NRL00_21705 PF01618 MotA/TolQ/ExbB proton channel family NRL00_21715 PF03472 Autoinducer binding domain NRL00_21715 PF00196 Bacterial regulatory proteins, luxR family NRL00_21720 PF01380 SIS domain NRL00_21725 PF00455 DeoR C terminal sensor domain NRL00_21725 PF08220 DeoR-like helix-turn-helix domain NRL00_21730 PF00072 Response regulator receiver domain NRL00_21730 PF00486 Transcriptional regulatory protein, C terminal NRL00_21735 PF00512 His Kinase A (phospho-acceptor) domain NRL00_21735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRL00_21735 PF00672 HAMP domain NRL00_21740 PF00905 Penicillin binding protein transpeptidase domain NRL00_21745 PF06123 Inner membrane protein CreD NRL00_21750 PF00132 Bacterial transferase hexapeptide (six repeats) NRL00_21750 PF14602 Hexapeptide repeat of succinyl-transferase NRL00_21750 PF12804 MobA-like NTP transferase domain NRL00_21755 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NRL00_21755 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NRL00_21760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL00_21760 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRL00_21765 PF00231 ATP synthase NRL00_21770 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRL00_21770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRL00_21770 PF00306 ATP synthase alpha/beta chain, C terminal domain NRL00_21775 PF00213 ATP synthase delta (OSCP) subunit NRL00_21780 PF00430 ATP synthase B/B' CF(0) NRL00_21785 PF00137 ATP synthase subunit C NRL00_21790 PF00119 ATP synthase A chain NRL00_21800 PF17762 HTH domain found in ParB protein NRL00_21800 PF02195 ParB-like nuclease domain NRL00_21805 PF13614 AAA domain NRL00_21810 PF02527 rRNA small subunit methyltransferase G NRL00_21815 PF01134 Glucose inhibited division protein A NRL00_21815 PF13932 GidA associated domain NRL00_21820 PF00258 Flavodoxin NRL00_21825 PF07715 TonB-dependent Receptor Plug Domain NRL00_21825 PF00593 TonB dependent receptor NRL00_21830 PF00005 ABC transporter NRL00_21835 PF00005 ABC transporter NRL00_21845 PF01032 FecCD transport family NRL00_21865 PF02384 N-6 DNA Methylase NRL00_21870 PF14338 Mrr N-terminal domain NRL00_21870 PF04471 Restriction endonuclease NRL00_21875 PF00772 DnaB-like helicase N terminal domain NRL00_21875 PF03796 DnaB-like helicase C terminal domain NRL00_21900 PF13356 Arm DNA-binding domain NRL00_21900 PF00589 Phage integrase family NRL00_21905 PF01926 50S ribosome-binding GTPase NRL00_21905 PF12631 MnmE helical domain NRL00_21905 PF10396 GTP-binding protein TrmE N-terminus NRL00_21910 PF02096 60Kd inner membrane protein NRL00_21910 PF14849 YidC periplasmic domain NRL00_21915 PF01809 Putative membrane protein insertion efficiency factor NRL00_21920 PF00825 Ribonuclease P NRL00_21925 PF00468 Ribosomal protein L34 NRL00_21930 PF00005 ABC transporter NRL00_21935 PF00528 Binding-protein-dependent transport system inner membrane component NRL00_21940 PF00497 Bacterial extracellular solute-binding proteins, family 3