locus-tag class description L1S45_00005 PF00308 Bacterial dnaA protein L1S45_00005 PF08299 Bacterial dnaA protein helix-turn-helix L1S45_00005 PF11638 DnaA N-terminal domain L1S45_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain L1S45_00010 PF02767 DNA polymerase III beta subunit, central domain L1S45_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain L1S45_00015 PF02463 RecF/RecN/SMC N terminal domain L1S45_00020 PF00204 DNA gyrase B L1S45_00020 PF00986 DNA gyrase B subunit, carboxyl terminus L1S45_00020 PF18053 DNA gyrase B subunit insert domain L1S45_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_00020 PF01751 Toprim domain L1S45_00030 PF13280 WYL domain L1S45_00030 PF08279 HTH domain L1S45_00035 PF00011 Hsp20/alpha crystallin family L1S45_00040 PF00011 Hsp20/alpha crystallin family L1S45_00045 PF00155 Aminotransferase class I and II L1S45_00060 PF07690 Major Facilitator Superfamily L1S45_00065 PF00072 Response regulator receiver domain L1S45_00065 PF00486 Transcriptional regulatory protein, C terminal L1S45_00070 PF00512 His Kinase A (phospho-acceptor) domain L1S45_00070 PF13493 Domain of unknown function (DUF4118) L1S45_00070 PF13492 GAF domain L1S45_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain L1S45_00075 PF02669 K+-transporting ATPase, c chain L1S45_00085 PF03814 Potassium-transporting ATPase A subunit L1S45_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L1S45_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_00100 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_00100 PF00512 His Kinase A (phospho-acceptor) domain L1S45_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_00105 PF00873 AcrB/AcrD/AcrF family L1S45_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_00115 PF00440 Bacterial regulatory proteins, tetR family L1S45_00150 PF07690 Major Facilitator Superfamily L1S45_00160 PF00672 HAMP domain L1S45_00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_00160 PF00512 His Kinase A (phospho-acceptor) domain L1S45_00165 PF14532 Sigma-54 interaction domain L1S45_00165 PF02954 Bacterial regulatory protein, Fis family L1S45_00165 PF00072 Response regulator receiver domain L1S45_00175 PF12146 Serine aminopeptidase, S33 L1S45_00180 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_00185 PF00588 SpoU rRNA Methylase family L1S45_00185 PF12105 SpoU, rRNA methylase, C-terminal L1S45_00190 PF13291 ACT domain L1S45_00190 PF04607 Region found in RelA / SpoT proteins L1S45_00190 PF02824 TGS domain L1S45_00195 PF01192 RNA polymerase Rpb6 L1S45_00200 PF00625 Guanylate kinase L1S45_00205 PF01075 Glycosyltransferase family 9 (heptosyltransferase) L1S45_00220 PF00892 EamA-like transporter family L1S45_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_00240 PF03466 LysR substrate binding domain L1S45_00245 PF00579 tRNA synthetases class I (W and Y) L1S45_00250 PF00582 Universal stress protein family L1S45_00255 PF07055 Enoyl reductase FAD binding domain L1S45_00255 PF12241 Trans-2-enoyl-CoA reductase catalytic region L1S45_00255 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase L1S45_00260 PF00990 Diguanylate cyclase, GGDEF domain L1S45_00265 PF00210 Ferritin-like domain L1S45_00275 PF07690 Major Facilitator Superfamily L1S45_00280 PF01810 LysE type translocator L1S45_00285 PF07694 5TMR of 5TMR-LYT L1S45_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_00285 PF06580 Histidine kinase L1S45_00290 PF04397 LytTr DNA-binding domain L1S45_00290 PF00072 Response regulator receiver domain L1S45_00295 PF07690 Major Facilitator Superfamily L1S45_00300 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain L1S45_00300 PF02222 ATP-grasp domain L1S45_00305 PF00731 AIR carboxylase L1S45_00320 PF03466 LysR substrate binding domain L1S45_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_00325 PF00593 TonB dependent receptor L1S45_00325 PF07715 TonB-dependent Receptor Plug Domain L1S45_00330 PF01177 Asp/Glu/Hydantoin racemase L1S45_00365 PF00899 ThiF family L1S45_00370 PF02657 Fe-S metabolism associated domain L1S45_00375 PF00266 Aminotransferase class-V L1S45_00380 PF00580 UvrD/REP helicase N-terminal domain L1S45_00380 PF13361 UvrD-like helicase C-terminal domain L1S45_00385 PF00990 Diguanylate cyclase, GGDEF domain L1S45_00385 PF03707 Bacterial signalling protein N terminal repeat L1S45_00385 PF13188 PAS domain L1S45_00385 PF00563 EAL domain L1S45_00390 PF13442 Cytochrome C oxidase, cbb3-type, subunit III L1S45_00395 PF08240 Alcohol dehydrogenase GroES-like domain L1S45_00395 PF00107 Zinc-binding dehydrogenase L1S45_00400 PF00155 Aminotransferase class I and II L1S45_00405 PF00440 Bacterial regulatory proteins, tetR family L1S45_00405 PF08360 QacR-like protein, C-terminal region L1S45_00410 PF01370 NAD dependent epimerase/dehydratase family L1S45_00425 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) L1S45_00445 PF00593 TonB dependent receptor L1S45_00445 PF07715 TonB-dependent Receptor Plug Domain L1S45_00450 PF01497 Periplasmic binding protein L1S45_00455 PF00005 ABC transporter L1S45_00460 PF01032 FecCD transport family L1S45_00465 PF01032 FecCD transport family L1S45_00470 PF00005 ABC transporter L1S45_00475 PF04954 Siderophore-interacting protein L1S45_00475 PF08021 Siderophore-interacting FAD-binding domain L1S45_00475 PF00005 ABC transporter L1S45_00475 PF00664 ABC transporter transmembrane region L1S45_00485 PF00668 Condensation domain L1S45_00485 PF00550 Phosphopantetheine attachment site L1S45_00485 PF00975 Thioesterase domain L1S45_00485 PF13193 AMP-binding enzyme C-terminal domain L1S45_00485 PF00501 AMP-binding enzyme L1S45_00490 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) L1S45_00495 PF00668 Condensation domain L1S45_00495 PF00501 AMP-binding enzyme L1S45_00495 PF00550 Phosphopantetheine attachment site L1S45_00505 PF00282 Pyridoxal-dependent decarboxylase conserved domain L1S45_00545 PF13362 Toprim domain L1S45_00545 PF18818 Metallopeptidase superfamily domain L1S45_00545 PF08401 Domain of unknown function (DUF1738) L1S45_00575 PF00589 Phage integrase family L1S45_00575 PF13356 Arm DNA-binding domain L1S45_00580 PF03755 YicC-like family, N-terminal region L1S45_00580 PF08340 Domain of unknown function (DUF1732) L1S45_00585 PF01138 3' exoribonuclease family, domain 1 L1S45_00585 PF03725 3' exoribonuclease family, domain 2 L1S45_00590 PF00156 Phosphoribosyl transferase domain L1S45_00595 PF00403 Heavy-metal-associated domain L1S45_00600 PF00376 MerR family regulatory protein L1S45_00600 PF09278 MerR, DNA binding L1S45_00605 PF00563 EAL domain L1S45_00605 PF01590 GAF domain L1S45_00605 PF00990 Diguanylate cyclase, GGDEF domain L1S45_00605 PF00360 Phytochrome region L1S45_00610 PF06288 Protein of unknown function (DUF1040) L1S45_00615 PF13746 4Fe-4S dicluster domain L1S45_00615 PF12801 4Fe-4S binding domain L1S45_00615 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase L1S45_00620 PF01636 Phosphotransferase enzyme family L1S45_00625 PF01323 DSBA-like thioredoxin domain L1S45_00630 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_00635 PF00005 ABC transporter L1S45_00645 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain L1S45_00645 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family L1S45_00650 PF00857 Isochorismatase family L1S45_00660 PF04463 Protein of unknown function (DUF523) L1S45_00665 PF01553 Acyltransferase L1S45_00670 PF01553 Acyltransferase L1S45_00675 PF01078 Magnesium chelatase, subunit ChlI L1S45_00675 PF13335 Magnesium chelatase, subunit ChlI C-terminal L1S45_00680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L1S45_00680 PF00205 Thiamine pyrophosphate enzyme, central domain L1S45_00680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain L1S45_00690 PF01063 Amino-transferase class IV L1S45_00695 PF00920 Dehydratase family L1S45_00700 PF00585 C-terminal regulatory domain of Threonine dehydratase L1S45_00700 PF00291 Pyridoxal-phosphate dependent enzyme L1S45_00705 PF01389 OmpA-like transmembrane domain L1S45_00705 PF00691 OmpA family L1S45_00715 PF00440 Bacterial regulatory proteins, tetR family L1S45_00725 PF00270 DEAD/DEAH box helicase L1S45_00725 PF18319 PriA DNA helicase Cys-rich region (CRR) domain L1S45_00725 PF18074 Primosomal protein N C-terminal domain L1S45_00725 PF17764 3′ DNA-binding domain (3′BD) L1S45_00725 PF00271 Helicase conserved C-terminal domain L1S45_00730 PF01197 Ribosomal protein L31 L1S45_00735 PF13460 NAD(P)H-binding L1S45_00735 PF11066 Protein of unknown function (DUF2867) L1S45_00740 PF00390 Malic enzyme, N-terminal domain L1S45_00740 PF03949 Malic enzyme, NAD binding domain L1S45_00750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_00750 PF00512 His Kinase A (phospho-acceptor) domain L1S45_00750 PF00672 HAMP domain L1S45_00755 PF00072 Response regulator receiver domain L1S45_00755 PF00486 Transcriptional regulatory protein, C terminal L1S45_00760 PF05958 tRNA (Uracil-5-)-methyltransferase L1S45_00795 PF16221 winged helix-turn-helix L1S45_00795 PF16254 Domain of unknown function (DUF4910) L1S45_00795 PF09940 Domain of unknown function (DUF2172) L1S45_00815 PF03102 NeuB family L1S45_00815 PF08666 SAF domain L1S45_00825 PF02348 Cytidylyltransferase L1S45_00845 PF13193 AMP-binding enzyme C-terminal domain L1S45_00845 PF00501 AMP-binding enzyme L1S45_00860 PF00535 Glycosyl transferase family 2 L1S45_00865 PF03275 UDP-galactopyranose mutase L1S45_00875 PF00535 Glycosyl transferase family 2 L1S45_00880 PF07478 D-ala D-ala ligase C-terminus L1S45_00880 PF01820 D-ala D-ala ligase N-terminus L1S45_00885 PF08241 Methyltransferase domain L1S45_00895 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family L1S45_00905 PF00682 HMGL-like L1S45_00910 PF03328 HpcH/HpaI aldolase/citrate lyase family L1S45_00935 PF00155 Aminotransferase class I and II L1S45_00945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family L1S45_00950 PF02719 Polysaccharide biosynthesis protein L1S45_00955 PF00128 Alpha amylase, catalytic domain L1S45_00955 PF02903 Alpha amylase, N-terminal ig-like domain L1S45_00965 PF03724 META domain L1S45_00970 PF00012 Hsp70 protein L1S45_00975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain L1S45_00975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L1S45_00980 PF05981 CreA protein L1S45_00995 PF01258 Prokaryotic dksA/traR C4-type zinc finger L1S45_01000 PF00120 Glutamine synthetase, catalytic domain L1S45_01005 PF00202 Aminotransferase class-III L1S45_01010 PF13416 Bacterial extracellular solute-binding protein L1S45_01015 PF13416 Bacterial extracellular solute-binding protein L1S45_01020 PF00005 ABC transporter L1S45_01020 PF08402 TOBE domain L1S45_01025 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_01030 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_01035 PF03473 MOSC domain L1S45_01035 PF03475 3-alpha domain L1S45_01050 PF03061 Thioesterase superfamily L1S45_01060 PF00034 Cytochrome c L1S45_01065 PF02696 Uncharacterized ACR, YdiU/UPF0061 family L1S45_01075 PF02592 Putative vitamin uptake transporter L1S45_01080 PF03737 Aldolase/RraA L1S45_01085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_01085 PF00672 HAMP domain L1S45_01090 PF01769 Divalent cation transporter L1S45_01090 PF00571 CBS domain L1S45_01090 PF03448 MgtE intracellular N domain L1S45_01095 PF10414 Sirohaem synthase dimerisation region L1S45_01095 PF14824 Sirohaem biosynthesis protein central L1S45_01095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases L1S45_01100 PF01226 Formate/nitrite transporter L1S45_01105 PF13806 Rieske-like [2Fe-2S] domain L1S45_01110 PF18267 Rubredoxin NAD+ reductase C-terminal domain L1S45_01110 PF04324 BFD-like [2Fe-2S] binding domain L1S45_01110 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_01110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain L1S45_01110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain L1S45_01115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_01115 PF03466 LysR substrate binding domain L1S45_01120 PF07690 Major Facilitator Superfamily L1S45_01125 PF07724 AAA domain (Cdc48 subfamily) L1S45_01125 PF10431 C-terminal, D2-small domain, of ClpB protein L1S45_01125 PF00004 ATPase family associated with various cellular activities (AAA) L1S45_01130 PF00227 Proteasome subunit L1S45_01140 PF05746 DALR anticodon binding domain L1S45_01140 PF03485 Arginyl tRNA synthetase N terminal domain L1S45_01140 PF00750 tRNA synthetases class I (R) L1S45_01150 PF04542 Sigma-70 region 2 L1S45_01150 PF04545 Sigma-70, region 4 L1S45_01155 PF12973 ChrR Cupin-like domain L1S45_01160 PF02673 Bacitracin resistance protein BacA L1S45_01165 PF00248 Aldo/keto reductase family L1S45_01170 PF01263 Aldose 1-epimerase L1S45_01175 PF10509 Galactokinase galactose-binding signature L1S45_01175 PF08544 GHMP kinases C terminal L1S45_01175 PF00288 GHMP kinases N terminal domain L1S45_01180 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain L1S45_01180 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain L1S45_01185 PF16363 GDP-mannose 4,6 dehydratase L1S45_01190 PF00356 Bacterial regulatory proteins, lacI family L1S45_01195 PF00703 Glycosyl hydrolases family 2 L1S45_01195 PF02837 Glycosyl hydrolases family 2, sugar binding domain L1S45_01195 PF16353 Domain of unknown function(DUF4981) L1S45_01195 PF02836 Glycosyl hydrolases family 2, TIM barrel domain L1S45_01195 PF02929 Beta galactosidase small chain L1S45_01200 PF13407 Periplasmic binding protein domain L1S45_01205 PF00005 ABC transporter L1S45_01210 PF02653 Branched-chain amino acid transport system / permease component L1S45_01215 PF02743 Cache domain L1S45_01215 PF00672 HAMP domain L1S45_01215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_01240 PF00696 Amino acid kinase family L1S45_01245 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain L1S45_01245 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain L1S45_01250 PF03606 C4-dicarboxylate anaerobic carrier L1S45_01255 PF01316 Arginine repressor, DNA binding domain L1S45_01255 PF02863 Arginine repressor, C-terminal domain L1S45_01260 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain L1S45_01260 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain L1S45_01265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain L1S45_01265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain L1S45_01285 PF02666 Phosphatidylserine decarboxylase L1S45_01295 PF00672 HAMP domain L1S45_01295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_01295 PF02743 Cache domain L1S45_01300 PF08212 Lipocalin-like domain L1S45_01305 PF06719 AraC-type transcriptional regulator N-terminus L1S45_01305 PF12833 Helix-turn-helix domain L1S45_01310 PF00465 Iron-containing alcohol dehydrogenase L1S45_01315 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch L1S45_01315 PF05222 Alanine dehydrogenase/PNT, N-terminal domain L1S45_01315 PF01262 Alanine dehydrogenase/PNT, C-terminal domain L1S45_01320 PF02233 NAD(P) transhydrogenase beta subunit L1S45_01330 PF03313 Serine dehydratase alpha chain L1S45_01335 PF00375 Sodium:dicarboxylate symporter family L1S45_01340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L1S45_01340 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_01345 PF13525 Outer membrane lipoprotein L1S45_01350 PF00849 RNA pseudouridylate synthase L1S45_01350 PF01479 S4 domain L1S45_01355 PF02578 Multi-copper polyphenol oxidoreductase laccase L1S45_01360 PF17871 AAA lid domain L1S45_01360 PF00004 ATPase family associated with various cellular activities (AAA) L1S45_01360 PF07724 AAA domain (Cdc48 subfamily) L1S45_01360 PF02861 Clp amino terminal domain, pathogenicity island component L1S45_01360 PF10431 C-terminal, D2-small domain, of ClpB protein L1S45_01370 PF03590 Aspartate-ammonia ligase L1S45_01375 PF01037 Lrp/AsnC ligand binding domain L1S45_01385 PF10063 Uncharacterized integral membrane protein (DUF2301) L1S45_01390 PF00478 IMP dehydrogenase / GMP reductase domain L1S45_01390 PF00571 CBS domain L1S45_01410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_01410 PF00512 His Kinase A (phospho-acceptor) domain L1S45_01420 PF00072 Response regulator receiver domain L1S45_01420 PF00158 Sigma-54 interaction domain L1S45_01425 PF06496 Protein of unknown function (DUF1097) L1S45_01430 PF00174 Oxidoreductase molybdopterin binding domain L1S45_01435 PF01794 Ferric reductase like transmembrane component L1S45_01450 PF00072 Response regulator receiver domain L1S45_01450 PF00486 Transcriptional regulatory protein, C terminal L1S45_01455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_01465 PF00384 Molybdopterin oxidoreductase L1S45_01465 PF18364 Molybdopterin oxidoreductase N-terminal domain L1S45_01465 PF01568 Molydopterin dinucleotide binding domain L1S45_01470 PF03264 NapC/NirT cytochrome c family, N-terminal region L1S45_01475 PF01751 Toprim domain L1S45_01475 PF01131 DNA topoisomerase L1S45_01490 PF12852 Cupin L1S45_01490 PF12833 Helix-turn-helix domain L1S45_01495 PF02386 Cation transport protein L1S45_01500 PF02254 TrkA-N domain L1S45_01500 PF02080 TrkA-C domain L1S45_01505 PF01565 FAD binding domain L1S45_01505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain L1S45_01510 PF03099 Biotin/lipoate A/B protein ligase family L1S45_01510 PF08279 HTH domain L1S45_01510 PF02237 Biotin protein ligase C terminal domain L1S45_01515 PF00485 Phosphoribulokinase / Uridine kinase family L1S45_01530 PF00009 Elongation factor Tu GTP binding domain L1S45_01530 PF03144 Elongation factor Tu domain 2 L1S45_01530 PF03143 Elongation factor Tu C-terminal domain L1S45_01540 PF00584 SecE/Sec61-gamma subunits of protein translocation complex L1S45_01545 PF00467 KOW motif L1S45_01545 PF02357 Transcription termination factor nusG L1S45_01550 PF03946 Ribosomal protein L11, N-terminal domain L1S45_01550 PF00298 Ribosomal protein L11, RNA binding domain L1S45_01555 PF00687 Ribosomal protein L1p/L10e family L1S45_01560 PF00466 Ribosomal protein L10 L1S45_01565 PF16320 Ribosomal protein L7/L12 dimerisation domain L1S45_01565 PF00542 Ribosomal protein L7/L12 C-terminal domain L1S45_01570 PF04563 RNA polymerase beta subunit L1S45_01570 PF10385 RNA polymerase beta subunit external 1 domain L1S45_01570 PF00562 RNA polymerase Rpb2, domain 6 L1S45_01570 PF04560 RNA polymerase Rpb2, domain 7 L1S45_01570 PF04561 RNA polymerase Rpb2, domain 2 L1S45_01570 PF04565 RNA polymerase Rpb2, domain 3 L1S45_01575 PF04997 RNA polymerase Rpb1, domain 1 L1S45_01575 PF00623 RNA polymerase Rpb1, domain 2 L1S45_01575 PF04983 RNA polymerase Rpb1, domain 3 L1S45_01575 PF05000 RNA polymerase Rpb1, domain 4 L1S45_01575 PF04998 RNA polymerase Rpb1, domain 5 L1S45_01580 PF13309 HTH domain L1S45_01580 PF08348 YheO-like PAS domain L1S45_01585 PF01042 Endoribonuclease L-PSP L1S45_01590 PF02635 DsrE/DsrF-like family L1S45_01595 PF02635 DsrE/DsrF-like family L1S45_01600 PF04077 DsrH like protein L1S45_01605 PF00164 Ribosomal protein S12/S23 L1S45_01610 PF00177 Ribosomal protein S7p/S5e L1S45_01615 PF00679 Elongation factor G C-terminus L1S45_01615 PF00009 Elongation factor Tu GTP binding domain L1S45_01615 PF03764 Elongation factor G, domain IV L1S45_01615 PF14492 Elongation Factor G, domain II L1S45_01615 PF03144 Elongation factor Tu domain 2 L1S45_01620 PF00009 Elongation factor Tu GTP binding domain L1S45_01620 PF03144 Elongation factor Tu domain 2 L1S45_01620 PF03143 Elongation factor Tu C-terminal domain L1S45_01660 PF00860 Permease family L1S45_01665 PF02733 Dak1 domain L1S45_01670 PF02734 DAK2 domain L1S45_01675 PF03610 PTS system fructose IIA component L1S45_01675 PF05524 PEP-utilising enzyme, N-terminal L1S45_01675 PF00391 PEP-utilising enzyme, mobile domain L1S45_01675 PF00381 PTS HPr component phosphorylation site L1S45_01680 PF00465 Iron-containing alcohol dehydrogenase L1S45_01685 PF02954 Bacterial regulatory protein, Fis family L1S45_01685 PF00989 PAS fold L1S45_01685 PF00158 Sigma-54 interaction domain L1S45_01690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_01690 PF03466 LysR substrate binding domain L1S45_01700 PF04371 Porphyromonas-type peptidyl-arginine deiminase L1S45_01710 PF01594 AI-2E family transporter L1S45_01715 PF01569 PAP2 superfamily L1S45_01740 PF00583 Acetyltransferase (GNAT) family L1S45_01760 PF00990 Diguanylate cyclase, GGDEF domain L1S45_01770 PF00005 ABC transporter L1S45_01770 PF08402 TOBE domain L1S45_01780 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_01795 PF00392 Bacterial regulatory proteins, gntR family L1S45_01795 PF07702 UTRA domain L1S45_01805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_01805 PF03466 LysR substrate binding domain L1S45_01815 PF02678 Pirin L1S45_01815 PF17954 Quercetinase C-terminal cupin domain L1S45_01820 PF07681 DoxX L1S45_01825 PF17946 RecC C-terminal domain L1S45_01830 PF12705 PD-(D/E)XK nuclease superfamily L1S45_01830 PF13361 UvrD-like helicase C-terminal domain L1S45_01830 PF00580 UvrD/REP helicase N-terminal domain L1S45_01835 PF13538 UvrD-like helicase C-terminal domain L1S45_01850 PF03466 LysR substrate binding domain L1S45_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_01860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L1S45_01870 PF00990 Diguanylate cyclase, GGDEF domain L1S45_01895 PF00486 Transcriptional regulatory protein, C terminal L1S45_01895 PF00072 Response regulator receiver domain L1S45_01900 PF00512 His Kinase A (phospho-acceptor) domain L1S45_01900 PF00672 HAMP domain L1S45_01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_01905 PF00360 Phytochrome region L1S45_01905 PF00990 Diguanylate cyclase, GGDEF domain L1S45_01905 PF01590 GAF domain L1S45_01905 PF00563 EAL domain L1S45_01910 PF00593 TonB dependent receptor L1S45_01910 PF07715 TonB-dependent Receptor Plug Domain L1S45_01915 PF00313 'Cold-shock' DNA-binding domain L1S45_01925 PF01545 Cation efflux family L1S45_01925 PF16916 Dimerisation domain of Zinc Transporter L1S45_01935 PF00436 Single-strand binding protein family L1S45_01940 PF00196 Bacterial regulatory proteins, luxR family L1S45_01945 PF17755 UvrA DNA-binding domain L1S45_01945 PF17760 UvrA interaction domain L1S45_01945 PF00005 ABC transporter L1S45_01950 PF00990 Diguanylate cyclase, GGDEF domain L1S45_01955 PF03922 OmpW family L1S45_01960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_01960 PF00672 HAMP domain L1S45_01975 PF02219 Methylenetetrahydrofolate reductase L1S45_01985 PF03594 Benzoate membrane transport protein L1S45_01990 PF07883 Cupin domain L1S45_01990 PF01381 Helix-turn-helix L1S45_02020 PF04363 Protein of unknown function (DUF496) L1S45_02030 PF04751 Protein of unknown function (DUF615) L1S45_02035 PF01523 Putative modulator of DNA gyrase L1S45_02040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) L1S45_02045 PF01722 BolA-like protein L1S45_02055 PF05494 MlaC protein L1S45_02060 PF02470 MlaD protein L1S45_02065 PF02405 Permease MlaE L1S45_02070 PF00005 ABC transporter L1S45_02075 PF00571 CBS domain L1S45_02075 PF01380 SIS domain L1S45_02085 PF06835 Lipopolysaccharide-assembly, LptC-related L1S45_02090 PF03968 OstA-like protein L1S45_02095 PF12399 Branched-chain amino acid ATP-binding cassette transporter L1S45_02095 PF00005 ABC transporter L1S45_02100 PF04963 Sigma-54 factor, core binding domain L1S45_02100 PF04552 Sigma-54, DNA binding domain L1S45_02100 PF00309 Sigma-54 factor, Activator interacting domain (AID) L1S45_02105 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein L1S45_02110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L1S45_02115 PF03668 P-loop ATPase protein family L1S45_02120 PF00381 PTS HPr component phosphorylation site L1S45_02125 PF00874 PRD domain L1S45_02125 PF08279 HTH domain L1S45_02125 PF05043 Mga helix-turn-helix domain L1S45_02125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L1S45_02130 PF07071 KDGP aldolase L1S45_02135 PF03841 L-seryl-tRNA selenium transferase L1S45_02140 PF01979 Amidohydrolase family L1S45_02170 PF13180 PDZ domain L1S45_02175 PF00595 PDZ domain L1S45_02175 PF13180 PDZ domain L1S45_02185 PF03969 AFG1-like ATPase L1S45_02190 PF00572 Ribosomal protein L13 L1S45_02195 PF00380 Ribosomal protein S9/S16 L1S45_02200 PF00355 Rieske [2Fe-2S] domain L1S45_02200 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal L1S45_02205 PF00032 Cytochrome b(C-terminal)/b6/petD L1S45_02205 PF00033 Cytochrome b/b6/petB L1S45_02210 PF02167 Cytochrome C1 family L1S45_02215 PF02798 Glutathione S-transferase, N-terminal domain L1S45_02215 PF00043 Glutathione S-transferase, C-terminal domain L1S45_02220 PF04386 Stringent starvation protein B L1S45_02225 PF04972 BON domain L1S45_02230 PF13580 SIS domain L1S45_02235 PF02021 Uncharacterised protein family UPF0102 L1S45_02240 PF04348 LppC putative lipoprotein L1S45_02245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases L1S45_02260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term L1S45_02265 PF00813 FliP family L1S45_02270 PF01313 Bacterial export proteins, family 3 L1S45_02275 PF01311 Bacterial export proteins, family 1 L1S45_02280 PF01312 FlhB HrpN YscU SpaS Family L1S45_02285 PF00771 FHIPEP family L1S45_02290 PF02954 Bacterial regulatory protein, Fis family L1S45_02290 PF00072 Response regulator receiver domain L1S45_02290 PF00158 Sigma-54 interaction domain L1S45_02295 PF02049 Flagellar hook-basal body complex protein FliE L1S45_02300 PF08345 Flagellar M-ring protein C-terminal L1S45_02300 PF01514 Secretory protein of YscJ/FliF family L1S45_02305 PF01706 FliG C-terminal domain L1S45_02305 PF14841 FliG middle domain L1S45_02305 PF14842 FliG N-terminal domain L1S45_02315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L1S45_02315 PF18269 T3SS EscN ATPase C-terminal domain L1S45_02340 PF00460 Flagella basal body rod protein L1S45_02345 PF00460 Flagella basal body rod protein L1S45_02345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_02350 PF03963 Flagellar hook capping protein - N-terminal region L1S45_02350 PF13860 FlgD Ig-like domain L1S45_02350 PF13861 FlgD Tudor-like domain L1S45_02355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_02355 PF07559 Flagellar basal body protein FlaE L1S45_02355 PF00460 Flagella basal body rod protein L1S45_02360 PF00460 Flagella basal body rod protein L1S45_02360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_02365 PF00460 Flagella basal body rod protein L1S45_02365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_02370 PF02107 Flagellar L-ring protein L1S45_02375 PF02119 Flagellar P-ring protein L1S45_02385 PF00460 Flagella basal body rod protein L1S45_02385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_02390 PF00669 Bacterial flagellin N-terminal helical region L1S45_02410 PF00700 Bacterial flagellin C-terminal helical region L1S45_02410 PF00669 Bacterial flagellin N-terminal helical region L1S45_02415 PF07196 Flagellin hook IN motif L1S45_02415 PF02465 Flagellar hook-associated protein 2 N-terminus L1S45_02415 PF07195 Flagellar hook-associated protein 2 C-terminus L1S45_02420 PF02561 Flagellar protein FliS L1S45_02440 PF04545 Sigma-70, region 4 L1S45_02440 PF04542 Sigma-70 region 2 L1S45_02445 PF01618 MotA/TolQ/ExbB proton channel family L1S45_02450 PF00691 OmpA family L1S45_02450 PF13677 Membrane MotB of proton-channel complex MotA/MotB L1S45_02455 PF01464 Transglycosylase SLT domain L1S45_02455 PF01476 LysM domain L1S45_02465 PF02381 MraZ protein, putative antitoxin-like L1S45_02470 PF01795 MraW methylase family L1S45_02475 PF04999 Cell division protein FtsL L1S45_02480 PF00905 Penicillin binding protein transpeptidase domain L1S45_02480 PF03717 Penicillin-binding Protein dimerisation domain L1S45_02485 PF02875 Mur ligase family, glutamate ligase domain L1S45_02485 PF08245 Mur ligase middle domain L1S45_02485 PF01225 Mur ligase family, catalytic domain L1S45_02490 PF08245 Mur ligase middle domain L1S45_02490 PF02875 Mur ligase family, glutamate ligase domain L1S45_02490 PF01225 Mur ligase family, catalytic domain L1S45_02495 PF00953 Glycosyl transferase family 4 L1S45_02495 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 L1S45_02500 PF02875 Mur ligase family, glutamate ligase domain L1S45_02500 PF08245 Mur ligase middle domain L1S45_02505 PF01098 Cell cycle protein L1S45_02510 PF04101 Glycosyltransferase family 28 C-terminal domain L1S45_02510 PF03033 Glycosyltransferase family 28 N-terminal domain L1S45_02515 PF08245 Mur ligase middle domain L1S45_02515 PF02875 Mur ligase family, glutamate ligase domain L1S45_02515 PF01225 Mur ligase family, catalytic domain L1S45_02520 PF03799 Cell division protein FtsQ L1S45_02520 PF08478 POTRA domain, FtsQ-type L1S45_02525 PF02491 SHS2 domain inserted in FTSA L1S45_02530 PF12327 FtsZ family, C-terminal domain L1S45_02530 PF00091 Tubulin/FtsZ family, GTPase domain L1S45_02535 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase L1S45_02545 PF02810 SEC-C motif L1S45_02545 PF07517 SecA DEAD-like domain L1S45_02545 PF01043 SecA preprotein cross-linking domain L1S45_02545 PF07516 SecA Wing and Scaffold domain L1S45_02555 PF00293 NUDIX domain L1S45_02560 PF03884 DNA gyrase inhibitor YacG L1S45_02565 PF07072 Cell division protein L1S45_02570 PF01121 Dephospho-CoA kinase L1S45_02575 PF06750 Bacterial Peptidase A24 N-terminal domain L1S45_02575 PF01478 Type IV leader peptidase family L1S45_02580 PF00482 Type II secretion system (T2SS), protein F L1S45_02585 PF00437 Type II/IV secretion system protein L1S45_02585 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain L1S45_02590 PF07963 Prokaryotic N-terminal methylation motif L1S45_02595 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain L1S45_02595 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain L1S45_02605 PF01510 N-acetylmuramoyl-L-alanine amidase L1S45_02610 PF00392 Bacterial regulatory proteins, gntR family L1S45_02610 PF07729 FCD domain L1S45_02615 PF00456 Transketolase, thiamine diphosphate binding domain L1S45_02615 PF17831 Pyruvate dehydrogenase E1 component middle domain L1S45_02620 PF02817 e3 binding domain L1S45_02620 PF00364 Biotin-requiring enzyme L1S45_02620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L1S45_02625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L1S45_02625 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_02635 PF12729 Four helix bundle sensory module for signal transduction L1S45_02635 PF00672 HAMP domain L1S45_02635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_02640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_02640 PF00672 HAMP domain L1S45_02640 PF12729 Four helix bundle sensory module for signal transduction L1S45_02645 PF01734 Patatin-like phospholipase L1S45_02650 PF11791 Aconitate B N-terminal domain L1S45_02650 PF06434 Aconitate hydratase 2 N-terminus L1S45_02650 PF00330 Aconitase family (aconitate hydratase) L1S45_02655 PF00563 EAL domain L1S45_02655 PF12792 CSS motif domain associated with EAL L1S45_02660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_02660 PF03466 LysR substrate binding domain L1S45_02665 PF01810 LysE type translocator L1S45_02670 PF01565 FAD binding domain L1S45_02670 PF04030 D-arabinono-1,4-lactone oxidase L1S45_02675 PF07683 Cobalamin synthesis protein cobW C-terminal domain L1S45_02675 PF02492 CobW/HypB/UreG, nucleotide-binding domain L1S45_02680 PF07690 Major Facilitator Superfamily L1S45_02690 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) L1S45_02695 PF02152 Dihydroneopterin aldolase L1S45_02700 PF02660 Glycerol-3-phosphate acyltransferase L1S45_02735 PF07670 Nucleoside recognition L1S45_02740 PF00072 Response regulator receiver domain L1S45_02740 PF01584 CheW-like domain L1S45_02750 PF13718 GNAT acetyltransferase 2 L1S45_02750 PF17176 tRNA-binding domain L1S45_02750 PF05127 Helicase L1S45_02750 PF08351 Domain of unknown function (DUF1726) L1S45_02765 PF00210 Ferritin-like domain L1S45_02775 PF02142 MGS-like domain L1S45_02790 PF17763 Glutaminase/Asparaginase C-terminal domain L1S45_02790 PF00710 Asparaginase, N-terminal L1S45_02805 PF00356 Bacterial regulatory proteins, lacI family L1S45_02810 PF00367 phosphotransferase system, EIIB L1S45_02810 PF02378 Phosphotransferase system, EIIC L1S45_02815 PF11941 Domain of unknown function (DUF3459) L1S45_02815 PF00128 Alpha amylase, catalytic domain L1S45_02820 PF14602 Hexapeptide repeat of succinyl-transferase L1S45_02820 PF12464 Maltose acetyltransferase L1S45_02860 PF00171 Aldehyde dehydrogenase family L1S45_02865 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_02870 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_02875 PF00005 ABC transporter L1S45_02875 PF08402 TOBE domain L1S45_02880 PF13416 Bacterial extracellular solute-binding protein L1S45_02885 PF03466 LysR substrate binding domain L1S45_02885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_02890 PF03553 Na+/H+ antiporter family L1S45_02930 PF00534 Glycosyl transferases group 1 L1S45_02930 PF08323 Starch synthase catalytic domain L1S45_02935 PF00483 Nucleotidyl transferase L1S45_02940 PF08468 Methyltransferase small domain N-terminal L1S45_02940 PF05175 Methyltransferase small domain L1S45_02945 PF00701 Dihydrodipicolinate synthetase family L1S45_02950 PF00360 Phytochrome region L1S45_02950 PF01590 GAF domain L1S45_02950 PF00990 Diguanylate cyclase, GGDEF domain L1S45_02950 PF00563 EAL domain L1S45_02960 PF13419 Haloacid dehalogenase-like hydrolase L1S45_02965 PF17209 Hfq protein L1S45_02970 PF04403 Paraquat-inducible protein A L1S45_02975 PF02470 MlaD protein L1S45_02980 PF03886 ABC-type transport auxiliary lipoprotein component L1S45_02985 PF01389 OmpA-like transmembrane domain L1S45_02985 PF00691 OmpA family L1S45_02995 PF00657 GDSL-like Lipase/Acylhydrolase L1S45_03000 PF04076 Bacterial OB fold (BOF) protein L1S45_03005 PF01464 Transglycosylase SLT domain L1S45_03005 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain L1S45_03010 PF04362 Bacterial Fe(2+) trafficking L1S45_03015 PF00633 Helix-hairpin-helix motif L1S45_03015 PF00730 HhH-GPD superfamily base excision DNA repair protein L1S45_03015 PF14815 NUDIX domain L1S45_03015 PF10576 Iron-sulfur binding domain of endonuclease III L1S45_03020 PF16537 Type II secretion system protein B L1S45_03025 PF13401 AAA domain L1S45_03025 PF01471 Putative peptidoglycan binding domain L1S45_03030 PF01743 Poly A polymerase head domain L1S45_03030 PF12627 Probable RNA and SrmB- binding site of polymerase A L1S45_03030 PF01966 HD domain L1S45_03045 PF04172 LrgB-like family L1S45_03050 PF03788 LrgA family L1S45_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_03055 PF03466 LysR substrate binding domain L1S45_03065 PF00155 Aminotransferase class I and II L1S45_03065 PF00392 Bacterial regulatory proteins, gntR family L1S45_03085 PF04073 Aminoacyl-tRNA editing domain L1S45_03090 PF01384 Phosphate transporter family L1S45_03095 PF01865 Protein of unknown function DUF47 L1S45_03110 PF03279 Bacterial lipid A biosynthesis acyltransferase L1S45_03115 PF01467 Cytidylyltransferase-like L1S45_03115 PF00294 pfkB family carbohydrate kinase L1S45_03120 PF02321 Outer membrane efflux protein L1S45_03125 PF00293 NUDIX domain L1S45_03130 PF06853 Protein of unknown function (DUF1249) L1S45_03135 PF00149 Calcineurin-like phosphoesterase L1S45_03140 PF05728 Uncharacterised protein family (UPF0227) L1S45_03145 PF00293 NUDIX domain L1S45_03155 PF07869 Protein of unknown function (DUF1656) L1S45_03160 PF00529 HlyD membrane-fusion protein of T1SS L1S45_03160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_03165 PF04632 Fusaric acid resistance protein family L1S45_03170 PF01751 Toprim domain L1S45_03170 PF00204 DNA gyrase B L1S45_03170 PF00986 DNA gyrase B subunit, carboxyl terminus L1S45_03170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_03175 PF03989 DNA gyrase C-terminal domain, beta-propeller L1S45_03175 PF00521 DNA gyrase/topoisomerase IV, subunit A L1S45_03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_03185 PF03466 LysR substrate binding domain L1S45_03190 PF07690 Major Facilitator Superfamily L1S45_03195 PF02600 Disulfide bond formation protein DsbB L1S45_03205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_03205 PF03466 LysR substrate binding domain L1S45_03245 PF00226 DnaJ domain L1S45_03245 PF01556 DnaJ C terminal domain L1S45_03245 PF00684 DnaJ central domain L1S45_03255 PF00578 AhpC/TSA family L1S45_03275 PF01553 Acyltransferase L1S45_03280 PF04012 PspA/IM30 family L1S45_03295 PF01541 GIY-YIG catalytic domain L1S45_03305 PF00892 EamA-like transporter family L1S45_03310 PF03167 Uracil DNA glycosylase superfamily L1S45_03315 PF00892 EamA-like transporter family L1S45_03320 PF03466 LysR substrate binding domain L1S45_03320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_03325 PF00950 ABC 3 transport family L1S45_03330 PF00005 ABC transporter L1S45_03335 PF01297 Zinc-uptake complex component A periplasmic L1S45_03355 PF08525 Opacity-associated protein A N-terminal motif L1S45_03355 PF01551 Peptidase family M23 L1S45_03355 PF01476 LysM domain L1S45_03360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L1S45_03365 PF04222 Protein of unknown function (DUF416) L1S45_03380 PF02028 BCCT, betaine/carnitine/choline family transporter L1S45_03385 PF05188 MutS domain II L1S45_03385 PF05192 MutS domain III L1S45_03385 PF05190 MutS family domain IV L1S45_03385 PF00488 MutS domain V L1S45_03385 PF01624 MutS domain I L1S45_03390 PF02464 Competence-damaged protein L1S45_03395 PF00154 recA bacterial DNA recombination protein L1S45_03400 PF02631 RecX family L1S45_03405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L1S45_03405 PF01411 tRNA synthetases class II (A) L1S45_03405 PF02272 DHHA1 domain L1S45_03410 PF01842 ACT domain L1S45_03410 PF13840 ACT domain L1S45_03410 PF00696 Amino acid kinase family L1S45_03415 PF02599 Global regulator protein family L1S45_03450 PF00768 D-alanyl-D-alanine carboxypeptidase L1S45_03455 PF09335 SNARE associated Golgi protein L1S45_03460 PF00571 CBS domain L1S45_03460 PF03471 Transporter associated domain L1S45_03460 PF01595 Cyclin M transmembrane N-terminal domain L1S45_03465 PF08264 Anticodon-binding domain of tRNA L1S45_03465 PF00133 tRNA synthetases class I (I, L, M and V) L1S45_03465 PF10458 Valyl tRNA synthetase tRNA binding arm L1S45_03470 PF04364 DNA polymerase III chi subunit, HolC L1S45_03475 PF00883 Cytosol aminopeptidase family, catalytic domain L1S45_03475 PF02789 Cytosol aminopeptidase family, N-terminal domain L1S45_03480 PF03739 Lipopolysaccharide export system permease LptF/LptG L1S45_03485 PF03739 Lipopolysaccharide export system permease LptF/LptG L1S45_03690 PF01381 Helix-turn-helix L1S45_03710 PF00589 Phage integrase family L1S45_03710 PF02899 Phage integrase, N-terminal SAM-like domain L1S45_03715 PF00909 Ammonium Transporter Family L1S45_03720 PF05958 tRNA (Uracil-5-)-methyltransferase L1S45_03720 PF01938 TRAM domain L1S45_03725 PF00583 Acetyltransferase (GNAT) family L1S45_03735 PF07963 Prokaryotic N-terminal methylation motif L1S45_03740 PF01026 TatD related DNase L1S45_03745 PF07662 Na+ dependent nucleoside transporter C-terminus L1S45_03745 PF07670 Nucleoside recognition L1S45_03745 PF01773 Na+ dependent nucleoside transporter N-terminus L1S45_03755 PF01791 DeoC/LacD family aldolase L1S45_03760 PF00591 Glycosyl transferase family, a/b domain L1S45_03760 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain L1S45_03760 PF02885 Glycosyl transferase family, helical bundle domain L1S45_03765 PF01676 Metalloenzyme superfamily L1S45_03770 PF01048 Phosphorylase superfamily L1S45_03775 PF13426 PAS domain L1S45_03775 PF08448 PAS fold L1S45_03775 PF08447 PAS fold L1S45_03775 PF05231 MASE1 L1S45_03775 PF00563 EAL domain L1S45_03775 PF00990 Diguanylate cyclase, GGDEF domain L1S45_03785 PF18429 Domain of unknown function (DUF5609) L1S45_03800 PF18073 Rubredoxin metal binding domain L1S45_03805 PF07238 PilZ domain L1S45_03810 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ L1S45_03820 PF00216 Bacterial DNA-binding protein L1S45_03835 PF01207 Dihydrouridine synthase (Dus) L1S45_03840 PF01475 Ferric uptake regulator family L1S45_03855 PF05525 Branched-chain amino acid transport protein L1S45_03860 PF05525 Branched-chain amino acid transport protein L1S45_03865 PF05175 Methyltransferase small domain L1S45_03870 PF00270 DEAD/DEAH box helicase L1S45_03870 PF00271 Helicase conserved C-terminal domain L1S45_03875 PF03883 Peroxide stress protein YaaA L1S45_03880 PF00437 Type II/IV secretion system protein L1S45_03885 PF00437 Type II/IV secretion system protein L1S45_03890 PF01168 Alanine racemase, N-terminal domain L1S45_03895 PF14748 Pyrroline-5-carboxylate reductase dimerisation L1S45_03895 PF03807 NADP oxidoreductase coenzyme F420-dependent L1S45_03900 PF02325 YGGT family L1S45_03905 PF02594 Uncharacterised ACR, YggU family COG1872 L1S45_03920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_03930 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_03935 PF10952 Protein of unknown function (DUF2753) L1S45_03940 PF00378 Enoyl-CoA hydratase/isomerase L1S45_03955 PF00106 short chain dehydrogenase L1S45_03960 PF03129 Anticodon binding domain L1S45_03960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L1S45_03960 PF04073 Aminoacyl-tRNA editing domain L1S45_03965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_03965 PF00672 HAMP domain L1S45_03970 PF07499 RuvA, C-terminal domain L1S45_03970 PF01330 RuvA N terminal domain L1S45_03975 PF17864 RuvB AAA lid domain L1S45_03975 PF05491 RuvB C-terminal winged helix domain L1S45_03975 PF05496 Holliday junction DNA helicase RuvB P-loop domain L1S45_03980 PF01654 Cytochrome bd terminal oxidase subunit I L1S45_03985 PF02322 Cytochrome bd terminal oxidase subunit II L1S45_03990 PF08173 Membrane bound YbgT-like protein L1S45_03995 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) L1S45_04000 PF03061 Thioesterase superfamily L1S45_04005 PF01618 MotA/TolQ/ExbB proton channel family L1S45_04010 PF02472 Biopolymer transport protein ExbD/TolR L1S45_04020 PF07676 WD40-like Beta Propeller Repeat L1S45_04020 PF04052 TolB amino-terminal domain L1S45_04025 PF00691 OmpA family L1S45_04030 PF16331 TolA binding protein trimerisation L1S45_04030 PF13174 Tetratricopeptide repeat L1S45_04105 PF00672 HAMP domain L1S45_04105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_04110 PF02445 Quinolinate synthetase A protein L1S45_04115 PF01263 Aldose 1-epimerase L1S45_04120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L1S45_04120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain L1S45_04125 PF02446 4-alpha-glucanotransferase L1S45_04130 PF02806 Alpha amylase, C-terminal all-beta domain L1S45_04130 PF00128 Alpha amylase, catalytic domain L1S45_04130 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) L1S45_04135 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) L1S45_04135 PF00128 Alpha amylase, catalytic domain L1S45_04140 PF01641 SelR domain L1S45_04150 PF00293 NUDIX domain L1S45_04155 PF16884 N-terminal domain of oxidoreductase L1S45_04155 PF00107 Zinc-binding dehydrogenase L1S45_04160 PF01047 MarR family L1S45_04175 PF01037 Lrp/AsnC ligand binding domain L1S45_04185 PF07690 Major Facilitator Superfamily L1S45_04205 PF00209 Sodium:neurotransmitter symporter family L1S45_04215 PF00209 Sodium:neurotransmitter symporter family L1S45_04240 PF00155 Aminotransferase class I and II L1S45_04240 PF00392 Bacterial regulatory proteins, gntR family L1S45_04250 PF01810 LysE type translocator L1S45_04255 PF01177 Asp/Glu/Hydantoin racemase L1S45_04260 PF10518 TAT (twin-arginine translocation) pathway signal sequence L1S45_04260 PF07732 Multicopper oxidase L1S45_04260 PF07731 Multicopper oxidase L1S45_04260 PF00394 Multicopper oxidase L1S45_04265 PF07731 Multicopper oxidase L1S45_04265 PF07732 Multicopper oxidase L1S45_04265 PF00394 Multicopper oxidase L1S45_04275 PF04074 YhcH/YjgK/YiaL L1S45_04280 PF00871 Acetokinase family L1S45_04285 PF00924 Mechanosensitive ion channel L1S45_04290 PF03734 L,D-transpeptidase catalytic domain L1S45_04290 PF17969 L,D-transpeptidase C-terminal domain L1S45_04295 PF00474 Sodium:solute symporter family L1S45_04340 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ L1S45_04350 PF12848 ABC transporter L1S45_04350 PF00005 ABC transporter L1S45_04355 PF01380 SIS domain L1S45_04355 PF00571 CBS domain L1S45_04360 PF01957 NfeD-like C-terminal, partner-binding L1S45_04365 PF01145 SPFH domain / Band 7 family L1S45_04365 PF16200 C-terminal region of band_7 L1S45_04370 PF14824 Sirohaem biosynthesis protein central L1S45_04370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases L1S45_04370 PF10414 Sirohaem synthase dimerisation region L1S45_04375 PF01507 Phosphoadenosine phosphosulfate reductase family L1S45_04380 PF00009 Elongation factor Tu GTP binding domain L1S45_04385 PF02080 TrkA-C domain L1S45_04385 PF03600 Citrate transporter L1S45_04410 PF00043 Glutathione S-transferase, C-terminal domain L1S45_04410 PF02798 Glutathione S-transferase, N-terminal domain L1S45_04415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_04415 PF08447 PAS fold L1S45_04435 PF00005 ABC transporter L1S45_04450 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) L1S45_04465 PF00719 Inorganic pyrophosphatase L1S45_04470 PF01225 Mur ligase family, catalytic domain L1S45_04470 PF02875 Mur ligase family, glutamate ligase domain L1S45_04470 PF08245 Mur ligase middle domain L1S45_04475 PF02441 Flavoprotein L1S45_04480 PF00440 Bacterial regulatory proteins, tetR family L1S45_04485 PF00156 Phosphoribosyl transferase domain L1S45_04490 PF00005 ABC transporter L1S45_04495 PF01061 ABC-2 type transporter L1S45_04500 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component L1S45_04505 PF01869 BadF/BadG/BcrA/BcrD ATPase family L1S45_04535 PF02569 Pantoate-beta-alanine ligase L1S45_04540 PF02548 Ketopantoate hydroxymethyltransferase L1S45_04545 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) L1S45_04550 PF12626 Polymerase A arginine-rich C-terminus L1S45_04550 PF01743 Poly A polymerase head domain L1S45_04550 PF12627 Probable RNA and SrmB- binding site of polymerase A L1S45_04555 PF00749 tRNA synthetases class I (E and Q), catalytic domain L1S45_04560 PF01258 Prokaryotic dksA/traR C4-type zinc finger L1S45_04565 PF17746 SfsA N-terminal OB domain L1S45_04565 PF03749 Sugar fermentation stimulation protein RE domain L1S45_04575 PF08482 ATP-dependent helicase C-terminal L1S45_04575 PF00271 Helicase conserved C-terminal domain L1S45_04575 PF04408 Helicase associated domain (HA2) L1S45_04575 PF00270 DEAD/DEAH box helicase L1S45_04580 PF14814 Bifunctional transglycosylase second domain L1S45_04580 PF00905 Penicillin binding protein transpeptidase domain L1S45_04580 PF00912 Transglycosylase L1S45_04585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L1S45_04590 PF00893 Small Multidrug Resistance protein L1S45_04595 PF00893 Small Multidrug Resistance protein L1S45_04605 PF11849 Domain of unknown function (DUF3369) L1S45_04615 PF01569 PAP2 superfamily L1S45_04630 PF00202 Aminotransferase class-III L1S45_04635 PF00654 Voltage gated chloride channel L1S45_04645 PF01521 Iron-sulphur cluster biosynthesis L1S45_04675 PF02954 Bacterial regulatory protein, Fis family L1S45_04680 PF01207 Dihydrouridine synthase (Dus) L1S45_04685 PF02321 Outer membrane efflux protein L1S45_04690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_04720 PF00072 Response regulator receiver domain L1S45_04725 PF00854 POT family L1S45_04730 PF00483 Nucleotidyl transferase L1S45_04740 PF00459 Inositol monophosphatase family L1S45_04745 PF03795 YCII-related domain L1S45_04750 PF04279 Intracellular septation protein A L1S45_04755 PF00282 Pyridoxal-dependent decarboxylase conserved domain L1S45_04760 PF03006 Haemolysin-III related L1S45_04765 PF06826 Predicted Permease Membrane Region L1S45_04765 PF02080 TrkA-C domain L1S45_04785 PF01584 CheW-like domain L1S45_04785 PF00072 Response regulator receiver domain L1S45_04790 PF13472 GDSL-like Lipase/Acylhydrolase family L1S45_04795 PF00005 ABC transporter L1S45_04805 PF01370 NAD dependent epimerase/dehydratase family L1S45_04805 PF08338 Domain of unknown function (DUF1731) L1S45_04810 PF00563 EAL domain L1S45_04810 PF12792 CSS motif domain associated with EAL L1S45_04815 PF00155 Aminotransferase class I and II L1S45_04820 PF01483 Proprotein convertase P-domain L1S45_04820 PF04389 Peptidase family M28 L1S45_04825 PF02390 Putative methyltransferase L1S45_04830 PF04320 Protein with unknown function (DUF469) L1S45_04835 PF04960 Glutaminase L1S45_04840 PF00581 Rhodanese-like domain L1S45_04845 PF05922 Peptidase inhibitor I9 L1S45_04845 PF00082 Subtilase family L1S45_04850 PF06004 Bacterial protein of unknown function (DUF903) L1S45_04855 PF00664 ABC transporter transmembrane region L1S45_04855 PF00005 ABC transporter L1S45_04860 PF00561 alpha/beta hydrolase fold L1S45_04875 PF05547 Immune inhibitor A peptidase M6 L1S45_04875 PF00801 PKD domain L1S45_04880 PF06877 Regulator of ribonuclease activity B L1S45_04885 PF00563 EAL domain L1S45_04885 PF00990 Diguanylate cyclase, GGDEF domain L1S45_04885 PF03707 Bacterial signalling protein N terminal repeat L1S45_04910 PF09905 DNA-binding protein VF530 L1S45_04915 PF02666 Phosphatidylserine decarboxylase L1S45_04920 PF03193 RsgA GTPase L1S45_04925 PF00929 Exonuclease L1S45_04965 PF00313 'Cold-shock' DNA-binding domain L1S45_04975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_04975 PF00672 HAMP domain L1S45_04980 PF00749 tRNA synthetases class I (E and Q), catalytic domain L1S45_04985 PF00749 tRNA synthetases class I (E and Q), catalytic domain L1S45_05020 PF06483 Chitinase C L1S45_05020 PF00704 Glycosyl hydrolases family 18 L1S45_05035 PF02472 Biopolymer transport protein ExbD/TolR L1S45_05040 PF01618 MotA/TolQ/ExbB proton channel family L1S45_05045 PF01618 MotA/TolQ/ExbB proton channel family L1S45_05055 PF07715 TonB-dependent Receptor Plug Domain L1S45_05055 PF00593 TonB dependent receptor L1S45_05060 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_05065 PF12911 N-terminal TM domain of oligopeptide transport permease C L1S45_05065 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_05075 PF00005 ABC transporter L1S45_05075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_05080 PF00005 ABC transporter L1S45_05080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_05085 PF07687 Peptidase dimerisation domain L1S45_05085 PF01546 Peptidase family M20/M25/M40 L1S45_05090 PF00156 Phosphoribosyl transferase domain L1S45_05095 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) L1S45_05100 PF07417 Sigma factor-binding transcriptional regulator Crl L1S45_05105 PF01472 PUA domain L1S45_05105 PF00696 Amino acid kinase family L1S45_05110 PF00171 Aldehyde dehydrogenase family L1S45_05120 PF00582 Universal stress protein family L1S45_05140 PF00294 pfkB family carbohydrate kinase L1S45_05145 PF04227 Indigoidine synthase A like protein L1S45_05150 PF00194 Eukaryotic-type carbonic anhydrase L1S45_05155 PF03150 Di-haem cytochrome c peroxidase L1S45_05155 PF00034 Cytochrome c L1S45_05190 PF00550 Phosphopantetheine attachment site L1S45_05195 PF00550 Phosphopantetheine attachment site L1S45_05205 PF00501 AMP-binding enzyme L1S45_05205 PF13193 AMP-binding enzyme C-terminal domain L1S45_05210 PF07977 FabA-like domain L1S45_05220 PF00221 Aromatic amino acid lyase L1S45_05245 PF00109 Beta-ketoacyl synthase, N-terminal domain L1S45_05245 PF02801 Beta-ketoacyl synthase, C-terminal domain L1S45_05260 PF00109 Beta-ketoacyl synthase, N-terminal domain L1S45_05260 PF02801 Beta-ketoacyl synthase, C-terminal domain L1S45_05270 PF00994 Probable molybdopterin binding domain L1S45_05280 PF06738 Putative threonine/serine exporter L1S45_05285 PF12821 Threonine/Serine exporter, ThrE L1S45_05290 PF00186 Dihydrofolate reductase L1S45_05295 PF00005 ABC transporter L1S45_05295 PF00571 CBS domain L1S45_05300 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_05305 PF04069 Substrate binding domain of ABC-type glycine betaine transport system L1S45_05310 PF01507 Phosphoadenosine phosphosulfate reductase family L1S45_05315 PF01077 Nitrite and sulphite reductase 4Fe-4S domain L1S45_05315 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain L1S45_05320 PF00667 FAD binding domain L1S45_05320 PF00258 Flavodoxin L1S45_05320 PF00175 Oxidoreductase NAD-binding domain L1S45_05325 PF02567 Phenazine biosynthesis-like protein L1S45_05330 PF00152 tRNA synthetases class II (D, K and N) L1S45_05330 PF01336 OB-fold nucleic acid binding domain L1S45_05340 PF02743 Cache domain L1S45_05340 PF00672 HAMP domain L1S45_05340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_05345 PF03616 Sodium/glutamate symporter L1S45_05350 PF00710 Asparaginase, N-terminal L1S45_05350 PF17763 Glutaminase/Asparaginase C-terminal domain L1S45_05355 PF07023 Protein of unknown function (DUF1315) L1S45_05360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain L1S45_05360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L1S45_05375 PF01343 Peptidase family S49 L1S45_05380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L1S45_05380 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_05385 PF00881 Nitroreductase family L1S45_05390 PF14602 Hexapeptide repeat of succinyl-transferase L1S45_05390 PF12464 Maltose acetyltransferase L1S45_05395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain L1S45_05395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L1S45_05395 PF01842 ACT domain L1S45_05405 PF00107 Zinc-binding dehydrogenase L1S45_05405 PF08240 Alcohol dehydrogenase GroES-like domain L1S45_05410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_05410 PF03466 LysR substrate binding domain L1S45_05415 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 L1S45_05415 PF00367 phosphotransferase system, EIIB L1S45_05415 PF02378 Phosphotransferase system, EIIC L1S45_05420 PF00474 Sodium:solute symporter family L1S45_05425 PF06196 Protein of unknown function (DUF997) L1S45_05430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L1S45_05430 PF00289 Biotin carboxylase, N-terminal domain L1S45_05430 PF02785 Biotin carboxylase C-terminal domain L1S45_05435 PF00364 Biotin-requiring enzyme L1S45_05440 PF01220 Dehydroquinase class II L1S45_05445 PF16177 Acetyl-coenzyme A synthetase N-terminus L1S45_05445 PF00501 AMP-binding enzyme L1S45_05445 PF13193 AMP-binding enzyme C-terminal domain L1S45_05455 PF03707 Bacterial signalling protein N terminal repeat L1S45_05455 PF13188 PAS domain L1S45_05455 PF00563 EAL domain L1S45_05455 PF00990 Diguanylate cyclase, GGDEF domain L1S45_05475 PF02613 Nitrate reductase delta subunit L1S45_05480 PF00384 Molybdopterin oxidoreductase L1S45_05480 PF18364 Molybdopterin oxidoreductase N-terminal domain L1S45_05480 PF01568 Molydopterin dinucleotide binding domain L1S45_05485 PF03264 NapC/NirT cytochrome c family, N-terminal region L1S45_05490 PF00072 Response regulator receiver domain L1S45_05490 PF00486 Transcriptional regulatory protein, C terminal L1S45_05495 PF02683 Cytochrome C biogenesis protein transmembrane region L1S45_05495 PF00085 Thioredoxin L1S45_05495 PF11412 Disulphide bond corrector protein DsbC L1S45_05500 PF00578 AhpC/TSA family L1S45_05505 PF00392 Bacterial regulatory proteins, gntR family L1S45_05505 PF00155 Aminotransferase class I and II L1S45_05515 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family L1S45_05520 PF01627 Hpt domain L1S45_05520 PF00072 Response regulator receiver domain L1S45_05520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_05520 PF00672 HAMP domain L1S45_05520 PF00512 His Kinase A (phospho-acceptor) domain L1S45_05530 PF00464 Serine hydroxymethyltransferase L1S45_05545 PF03477 ATP cone domain L1S45_05550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region L1S45_05550 PF01872 RibD C-terminal domain L1S45_05555 PF00677 Lumazine binding domain L1S45_05560 PF00925 GTP cyclohydrolase II L1S45_05560 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase L1S45_05570 PF00885 6,7-dimethyl-8-ribityllumazine synthase L1S45_05575 PF01029 NusB family L1S45_05580 PF02769 AIR synthase related protein, C-terminal domain L1S45_05580 PF00586 AIR synthase related protein, N-terminal domain L1S45_05585 PF04608 Phosphatidylglycerophosphatase A L1S45_05590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_05590 PF00005 ABC transporter L1S45_05595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_05600 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_05605 PF12911 N-terminal TM domain of oligopeptide transport permease C L1S45_05605 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_05610 PF02780 Transketolase, C-terminal domain L1S45_05610 PF02779 Transketolase, pyrimidine binding domain L1S45_05610 PF13292 1-deoxy-D-xylulose-5-phosphate synthase L1S45_05615 PF00348 Polyprenyl synthetase L1S45_05620 PF02609 Exonuclease VII small subunit L1S45_05625 PF01618 MotA/TolQ/ExbB proton channel family L1S45_05630 PF00691 OmpA family L1S45_05630 PF13677 Membrane MotB of proton-channel complex MotA/MotB L1S45_05635 PF01272 Transcription elongation factor, GreA/GreB, C-term L1S45_05635 PF03449 Transcription elongation factor, N-terminal L1S45_05645 PF01985 CRS1 / YhbY (CRM) domain L1S45_05650 PF01728 FtsJ-like methyltransferase L1S45_05655 PF01434 Peptidase family M41 L1S45_05655 PF06480 FtsH Extracellular L1S45_05655 PF00004 ATPase family associated with various cellular activities (AAA) L1S45_05655 PF17862 AAA+ lid domain L1S45_05660 PF00809 Pterin binding enzyme L1S45_05665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L1S45_05665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L1S45_05665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L1S45_05665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L1S45_05670 PF00121 Triosephosphate isomerase L1S45_05675 PF03840 Preprotein translocase SecG subunit L1S45_05690 PF02576 RimP N-terminal domain L1S45_05690 PF17384 RimP C-terminal SH3 domain L1S45_05695 PF00575 S1 RNA binding domain L1S45_05695 PF13184 NusA-like KH domain L1S45_05695 PF08529 NusA N-terminal domain L1S45_05700 PF08364 Bacterial translation initiation factor IF-2 associated region L1S45_05700 PF11987 Translation-initiation factor 2 L1S45_05700 PF00009 Elongation factor Tu GTP binding domain L1S45_05700 PF04760 Translation initiation factor IF-2, N-terminal region L1S45_05705 PF02033 Ribosome-binding factor A L1S45_05710 PF09157 Pseudouridine synthase II TruB, C-terminal L1S45_05710 PF16198 tRNA pseudouridylate synthase B C-terminal domain L1S45_05710 PF01509 TruB family pseudouridylate synthase (N terminal domain) L1S45_05715 PF00312 Ribosomal protein S15 L1S45_05720 PF00013 KH domain L1S45_05720 PF00575 S1 RNA binding domain L1S45_05720 PF03725 3' exoribonuclease family, domain 2 L1S45_05720 PF01138 3' exoribonuclease family, domain 1 L1S45_05720 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain L1S45_05725 PF07690 Major Facilitator Superfamily L1S45_05730 PF00990 Diguanylate cyclase, GGDEF domain L1S45_05735 PF02635 DsrE/DsrF-like family L1S45_05745 PF10415 Fumarase C C-terminus L1S45_05745 PF00206 Lyase L1S45_05750 PF03575 Peptidase family S51 L1S45_05755 PF00196 Bacterial regulatory proteins, luxR family L1S45_05755 PF00072 Response regulator receiver domain L1S45_05760 PF00989 PAS fold L1S45_05760 PF00512 His Kinase A (phospho-acceptor) domain L1S45_05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_05765 PF13247 4Fe-4S dicluster domain L1S45_05770 PF03916 Polysulphide reductase, NrfD L1S45_05775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain L1S45_05775 PF01568 Molydopterin dinucleotide binding domain L1S45_05775 PF00384 Molybdopterin oxidoreductase L1S45_05795 PF02668 Taurine catabolism dioxygenase TauD, TfdA family L1S45_05800 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase L1S45_05805 PF17969 L,D-transpeptidase C-terminal domain L1S45_05805 PF03734 L,D-transpeptidase catalytic domain L1S45_05815 PF01523 Putative modulator of DNA gyrase L1S45_05820 PF01523 Putative modulator of DNA gyrase L1S45_05825 PF00258 Flavodoxin L1S45_05830 PF00589 Phage integrase family L1S45_05830 PF02899 Phage integrase, N-terminal SAM-like domain L1S45_05835 PF00990 Diguanylate cyclase, GGDEF domain L1S45_05840 PF01741 Large-conductance mechanosensitive channel, MscL L1S45_05850 PF02272 DHHA1 domain L1S45_05850 PF01368 DHH family L1S45_05850 PF17768 RecJ OB domain L1S45_05855 PF13411 MerR HTH family regulatory protein L1S45_05870 PF02508 Rnf-Nqr subunit, membrane protein L1S45_05875 PF06821 Serine hydrolase L1S45_05880 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family L1S45_05880 PF04055 Radical SAM superfamily L1S45_05885 PF03099 Biotin/lipoate A/B protein ligase family L1S45_05890 PF04359 Protein of unknown function (DUF493) L1S45_05895 PF07943 Penicillin-binding protein 5, C-terminal domain L1S45_05895 PF00768 D-alanyl-D-alanine carboxypeptidase L1S45_05900 PF03330 Lytic transglycolase L1S45_05900 PF05036 Sporulation related domain L1S45_05905 PF13406 Transglycosylase SLT domain L1S45_05910 PF01098 Cell cycle protein L1S45_05915 PF03717 Penicillin-binding Protein dimerisation domain L1S45_05915 PF00905 Penicillin binding protein transpeptidase domain L1S45_05920 PF02590 Predicted SPOUT methyltransferase L1S45_05930 PF01467 Cytidylyltransferase-like L1S45_05945 PF13603 Leucyl-tRNA synthetase, Domain 2 L1S45_05945 PF00133 tRNA synthetases class I (I, L, M and V) L1S45_05945 PF08264 Anticodon-binding domain of tRNA L1S45_05950 PF07295 Zinc-ribbon containing domain L1S45_05955 PF00795 Carbon-nitrogen hydrolase L1S45_05960 PF03471 Transporter associated domain L1S45_05960 PF00571 CBS domain L1S45_05965 PF02130 Uncharacterized protein family UPF0054 L1S45_05970 PF02562 PhoH-like protein L1S45_05975 PF00919 Uncharacterized protein family UPF0004 L1S45_05975 PF01938 TRAM domain L1S45_05975 PF04055 Radical SAM superfamily L1S45_05980 PF01494 FAD binding domain L1S45_05995 PF05230 MASE2 domain L1S45_05995 PF00990 Diguanylate cyclase, GGDEF domain L1S45_06000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_06000 PF03466 LysR substrate binding domain L1S45_06010 PF13419 Haloacid dehalogenase-like hydrolase L1S45_06020 PF00990 Diguanylate cyclase, GGDEF domain L1S45_06030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L1S45_06030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain L1S45_06040 PF09997 Predicted membrane protein (DUF2238) L1S45_06045 PF09285 Elongation factor P, C-terminal L1S45_06045 PF01132 Elongation factor P (EF-P) OB domain L1S45_06045 PF08207 Elongation factor P (EF-P) KOW-like domain L1S45_06055 PF00478 IMP dehydrogenase / GMP reductase domain L1S45_06075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_06075 PF00512 His Kinase A (phospho-acceptor) domain L1S45_06075 PF08521 Two-component sensor kinase N-terminal L1S45_06080 PF00072 Response regulator receiver domain L1S45_06080 PF00486 Transcriptional regulatory protein, C terminal L1S45_06100 PF00501 AMP-binding enzyme L1S45_06110 PF13847 Methyltransferase domain L1S45_06115 PF06224 Winged helix DNA-binding domain L1S45_06135 PF02313 Fumarate reductase subunit D L1S45_06140 PF02300 Fumarate reductase subunit C L1S45_06145 PF13183 4Fe-4S dicluster domain L1S45_06145 PF13085 2Fe-2S iron-sulfur cluster binding domain L1S45_06150 PF00890 FAD binding domain L1S45_06150 PF02910 Fumarate reductase flavoprotein C-term L1S45_06155 PF02743 Cache domain L1S45_06155 PF00672 HAMP domain L1S45_06155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_06160 PF03009 Glycerophosphoryl diester phosphodiesterase family L1S45_06165 PF00924 Mechanosensitive ion channel L1S45_06165 PF12795 Mechanosensitive ion channel porin domain L1S45_06165 PF12794 Mechanosensitive ion channel inner membrane domain 1 L1S45_06175 PF08525 Opacity-associated protein A N-terminal motif L1S45_06175 PF01551 Peptidase family M23 L1S45_06175 PF01476 LysM domain L1S45_06190 PF03466 LysR substrate binding domain L1S45_06190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_06205 PF00672 HAMP domain L1S45_06205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_06210 PF03466 LysR substrate binding domain L1S45_06210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_06215 PF00905 Penicillin binding protein transpeptidase domain L1S45_06215 PF17092 Penicillin-binding protein OB-like domain L1S45_06215 PF00912 Transglycosylase L1S45_06220 PF11104 Type IV pilus assembly protein PilM; L1S45_06230 PF04350 Pilus assembly protein, PilO L1S45_06240 PF11741 AMIN domain L1S45_06240 PF07660 Secretin and TonB N terminus short domain L1S45_06240 PF00263 Bacterial type II and III secretion system protein L1S45_06240 PF03958 Bacterial type II/III secretion system short domain L1S45_06245 PF01202 Shikimate kinase L1S45_06250 PF01761 3-dehydroquinate synthase L1S45_06260 PF02086 D12 class N6 adenine-specific DNA methyltransferase L1S45_06270 PF00834 Ribulose-phosphate 3 epimerase family L1S45_06275 PF13419 Haloacid dehalogenase-like hydrolase L1S45_06280 PF00579 tRNA synthetases class I (W and Y) L1S45_06290 PF00117 Glutamine amidotransferase class-I L1S45_06295 PF00202 Aminotransferase class-III L1S45_06300 PF04958 Arginine N-succinyltransferase beta subunit L1S45_06305 PF00171 Aldehyde dehydrogenase family L1S45_06315 PF13419 Haloacid dehalogenase-like hydrolase L1S45_06320 PF07690 Major Facilitator Superfamily L1S45_06325 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg L1S45_06325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L1S45_06325 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase L1S45_06325 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II L1S45_06325 PF10371 Domain of unknown function L1S45_06345 PF00155 Aminotransferase class I and II L1S45_06345 PF00392 Bacterial regulatory proteins, gntR family L1S45_06355 PF00005 ABC transporter L1S45_06355 PF12848 ABC transporter L1S45_06365 PF00128 Alpha amylase, catalytic domain L1S45_06365 PF16657 Maltogenic Amylase, C-terminal domain L1S45_06375 PF00012 Hsp70 protein L1S45_06390 PF04266 ASCH domain L1S45_06400 PF01048 Phosphorylase superfamily L1S45_06405 PF04973 Nicotinamide mononucleotide transporter L1S45_06410 PF03600 Citrate transporter L1S45_06410 PF02080 TrkA-C domain L1S45_06455 PF06071 Protein of unknown function (DUF933) L1S45_06455 PF01926 50S ribosome-binding GTPase L1S45_06460 PF01195 Peptidyl-tRNA hydrolase L1S45_06465 PF00149 Calcineurin-like phosphoesterase L1S45_06465 PF02872 5'-nucleotidase, C-terminal domain L1S45_06470 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase L1S45_06470 PF14572 Phosphoribosyl synthetase-associated domain L1S45_06480 PF00288 GHMP kinases N terminal domain L1S45_06480 PF08544 GHMP kinases C terminal L1S45_06485 PF03550 Outer membrane lipoprotein LolB L1S45_06490 PF01488 Shikimate / quinate 5-dehydrogenase L1S45_06490 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain L1S45_06490 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain L1S45_06495 PF03462 PCRF domain L1S45_06495 PF00472 RF-1 domain L1S45_06500 PF13847 Methyltransferase domain L1S45_06500 PF17827 PrmC N-terminal domain L1S45_06510 PF13369 Transglutaminase-like superfamily L1S45_06515 PF00793 DAHP synthetase I family L1S45_06520 PF00375 Sodium:dicarboxylate symporter family L1S45_06525 PF01228 Glycine radical L1S45_06530 PF03167 Uracil DNA glycosylase superfamily L1S45_06545 PF00923 Transaldolase/Fructose-6-phosphate aldolase L1S45_06550 PF01235 Sodium:alanine symporter family L1S45_06555 PF11992 Domain of unknown function (DUF3488) L1S45_06555 PF13559 Domain of unknown function (DUF4129) L1S45_06555 PF01841 Transglutaminase-like superfamily L1S45_06565 PF17863 AAA lid domain L1S45_06565 PF07726 ATPase family associated with various cellular activities (AAA) L1S45_06570 PF00144 Beta-lactamase L1S45_06575 PF00854 POT family L1S45_06580 PF03652 Holliday junction resolvase L1S45_06585 PF02622 Uncharacterized ACR, COG1678 L1S45_06590 PF12729 Four helix bundle sensory module for signal transduction L1S45_06590 PF00672 HAMP domain L1S45_06590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_06600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain L1S45_06600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain L1S45_06605 PF01235 Sodium:alanine symporter family L1S45_06615 PF00860 Permease family L1S45_06620 PF00072 Response regulator receiver domain L1S45_06620 PF00990 Diguanylate cyclase, GGDEF domain L1S45_06625 PF10692 Protein of unknown function (DUF2498) L1S45_06630 PF01554 MatE L1S45_06635 PF06719 AraC-type transcriptional regulator N-terminus L1S45_06635 PF12833 Helix-turn-helix domain L1S45_06640 PF00390 Malic enzyme, N-terminal domain L1S45_06640 PF03949 Malic enzyme, NAD binding domain L1S45_06645 PF01389 OmpA-like transmembrane domain L1S45_06645 PF00691 OmpA family L1S45_06650 PF00691 OmpA family L1S45_06650 PF01389 OmpA-like transmembrane domain L1S45_06655 PF01389 OmpA-like transmembrane domain L1S45_06655 PF00691 OmpA family L1S45_06670 PF00209 Sodium:neurotransmitter symporter family L1S45_06675 PF01734 Patatin-like phospholipase L1S45_06680 PF00990 Diguanylate cyclase, GGDEF domain L1S45_06685 PF00529 HlyD membrane-fusion protein of T1SS L1S45_06685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_06690 PF00873 AcrB/AcrD/AcrF family L1S45_06700 PF11842 Domain of unknown function (DUF3362) L1S45_06700 PF04055 Radical SAM superfamily L1S45_06700 PF08497 Radical SAM N-terminal L1S45_06725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold L1S45_06730 PF02075 Crossover junction endodeoxyribonuclease RuvC L1S45_06735 PF00230 Major intrinsic protein L1S45_06740 PF01464 Transglycosylase SLT domain L1S45_06740 PF10145 Phage-related minor tail protein L1S45_06740 PF01551 Peptidase family M23 L1S45_06745 PF00128 Alpha amylase, catalytic domain L1S45_06750 PF01551 Peptidase family M23 L1S45_06765 PF13091 PLD-like domain L1S45_06765 PF13396 Phospholipase_D-nuclease N-terminal L1S45_06775 PF01842 ACT domain L1S45_06775 PF00551 Formyl transferase L1S45_06780 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase L1S45_06790 PF00085 Thioredoxin L1S45_06795 PF01648 4'-phosphopantetheinyl transferase superfamily L1S45_06800 PF00877 NlpC/P60 family L1S45_06805 PF05971 RNA methyltransferase L1S45_06810 PF01575 MaoC like domain L1S45_06820 PF17969 L,D-transpeptidase C-terminal domain L1S45_06820 PF01476 LysM domain L1S45_06820 PF03734 L,D-transpeptidase catalytic domain L1S45_06830 PF07690 Major Facilitator Superfamily L1S45_06835 PF07690 Major Facilitator Superfamily L1S45_06840 PF00873 AcrB/AcrD/AcrF family L1S45_06845 PF00529 HlyD membrane-fusion protein of T1SS L1S45_06845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_06850 PF00486 Transcriptional regulatory protein, C terminal L1S45_06850 PF00072 Response regulator receiver domain L1S45_06855 PF00672 HAMP domain L1S45_06855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_06855 PF00512 His Kinase A (phospho-acceptor) domain L1S45_06855 PF13426 PAS domain L1S45_06860 PF00893 Small Multidrug Resistance protein L1S45_06865 PF00893 Small Multidrug Resistance protein L1S45_06875 PF06130 Phosphate propanoyltransferase L1S45_06880 PF00936 BMC domain L1S45_06885 PF04055 Radical SAM superfamily L1S45_06885 PF13187 4Fe-4S dicluster domain L1S45_06890 PF02901 Pyruvate formate lyase-like L1S45_06890 PF01228 Glycine radical L1S45_06895 PF00171 Aldehyde dehydrogenase family L1S45_06895 PF00465 Iron-containing alcohol dehydrogenase L1S45_06905 PF00171 Aldehyde dehydrogenase family L1S45_06905 PF00465 Iron-containing alcohol dehydrogenase L1S45_06910 PF00936 BMC domain L1S45_06915 PF00936 BMC domain L1S45_06920 PF00936 BMC domain L1S45_06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_06940 PF03466 LysR substrate binding domain L1S45_06945 PF02634 FdhD/NarQ family L1S45_06950 PF00384 Molybdopterin oxidoreductase L1S45_06965 PF00440 Bacterial regulatory proteins, tetR family L1S45_06970 PF09317 Domain of unknown function (DUF1974) L1S45_06970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L1S45_06970 PF02770 Acyl-CoA dehydrogenase, middle domain L1S45_06970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L1S45_06975 PF00873 AcrB/AcrD/AcrF family L1S45_06985 PF00224 Pyruvate kinase, barrel domain L1S45_06985 PF02887 Pyruvate kinase, alpha/beta domain L1S45_06990 PF01418 Helix-turn-helix domain, rpiR family L1S45_06990 PF01380 SIS domain L1S45_06995 PF02685 Glucokinase L1S45_07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_07005 PF00072 Response regulator receiver domain L1S45_07005 PF00486 Transcriptional regulatory protein, C terminal L1S45_07010 PF04055 Radical SAM superfamily L1S45_07010 PF18693 TRAM domain L1S45_07010 PF00919 Uncharacterized protein family UPF0004 L1S45_07015 PF00072 Response regulator receiver domain L1S45_07025 PF02001 Protein of unknown function DUF134 L1S45_07030 PF01022 Bacterial regulatory protein, arsR family L1S45_07035 PF06953 Arsenical resistance operon trans-acting repressor ArsD L1S45_07040 PF02374 Anion-transporting ATPase L1S45_07045 PF01758 Sodium Bile acid symporter family L1S45_07050 PF03960 ArsC family L1S45_07065 PF02049 Flagellar hook-basal body complex protein FliE L1S45_07070 PF08345 Flagellar M-ring protein C-terminal L1S45_07070 PF01514 Secretory protein of YscJ/FliF family L1S45_07075 PF14842 FliG N-terminal domain L1S45_07075 PF14841 FliG middle domain L1S45_07075 PF01706 FliG C-terminal domain L1S45_07085 PF18269 T3SS EscN ATPase C-terminal domain L1S45_07085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L1S45_07105 PF02154 Flagellar motor switch protein FliM L1S45_07105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term L1S45_07110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term L1S45_07115 PF04347 Flagellar biosynthesis protein, FliO L1S45_07125 PF01313 Bacterial export proteins, family 3 L1S45_07130 PF01311 Bacterial export proteins, family 1 L1S45_07135 PF01312 FlhB HrpN YscU SpaS Family L1S45_07140 PF00771 FHIPEP family L1S45_07145 PF00448 SRP54-type protein, GTPase domain L1S45_07150 PF10609 NUBPL iron-transfer P-loop NTPase L1S45_07155 PF04542 Sigma-70 region 2 L1S45_07155 PF04539 Sigma-70 region 3 L1S45_07155 PF04545 Sigma-70, region 4 L1S45_07160 PF00072 Response regulator receiver domain L1S45_07165 PF04344 Chemotaxis phosphatase, CheZ L1S45_07170 PF02895 Signal transducing histidine kinase, homodimeric domain L1S45_07170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_07170 PF01627 Hpt domain L1S45_07170 PF00072 Response regulator receiver domain L1S45_07170 PF01584 CheW-like domain L1S45_07175 PF01339 CheB methylesterase L1S45_07175 PF00072 Response regulator receiver domain L1S45_07180 PF01618 MotA/TolQ/ExbB proton channel family L1S45_07185 PF13677 Membrane MotB of proton-channel complex MotA/MotB L1S45_07185 PF00691 OmpA family L1S45_07190 PF13614 AAA domain L1S45_07200 PF01584 CheW-like domain L1S45_07210 PF00005 ABC transporter L1S45_07215 PF03379 CcmB protein L1S45_07220 PF01578 Cytochrome C assembly protein L1S45_07225 PF04995 Heme exporter protein D (CcmD) L1S45_07230 PF03100 CcmE L1S45_07235 PF01578 Cytochrome C assembly protein L1S45_07235 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal L1S45_07240 PF08534 Redoxin L1S45_07245 PF03918 Cytochrome C biogenesis protein L1S45_07255 PF04333 MlaA lipoprotein L1S45_07260 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain L1S45_07260 PF02777 Iron/manganese superoxide dismutases, C-terminal domain L1S45_07265 PF00462 Glutaredoxin L1S45_07270 PF01189 16S rRNA methyltransferase RsmB/F L1S45_07270 PF01029 NusB family L1S45_07285 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region L1S45_07285 PF01243 Pyridoxamine 5'-phosphate oxidase L1S45_07290 PF02798 Glutathione S-transferase, N-terminal domain L1S45_07300 PF13508 Acetyltransferase (GNAT) domain L1S45_07310 PF08007 Cupin superfamily protein L1S45_07315 PF08328 Adenylosuccinate lyase C-terminal L1S45_07315 PF00206 Lyase L1S45_07320 PF04356 Protein of unknown function (DUF489) L1S45_07330 PF00293 NUDIX domain L1S45_07335 PF00849 RNA pseudouridylate synthase L1S45_07345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L1S45_07345 PF02378 Phosphotransferase system, EIIC L1S45_07345 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit L1S45_07350 PF07690 Major Facilitator Superfamily L1S45_07360 PF09013 YopH, N-terminal L1S45_07365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L1S45_07365 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit L1S45_07365 PF02378 Phosphotransferase system, EIIC L1S45_07375 PF00583 Acetyltransferase (GNAT) family L1S45_07385 PF13411 MerR HTH family regulatory protein L1S45_07390 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_07390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L1S45_07395 PF00356 Bacterial regulatory proteins, lacI family L1S45_07395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family L1S45_07400 PF00367 phosphotransferase system, EIIB L1S45_07400 PF02378 Phosphotransferase system, EIIC L1S45_07405 PF00155 Aminotransferase class I and II L1S45_07430 PF01238 Phosphomannose isomerase type I L1S45_07435 PF12833 Helix-turn-helix domain L1S45_07440 PF00180 Isocitrate/isopropylmalate dehydrogenase L1S45_07445 PF00916 Sulfate permease family L1S45_07445 PF01740 STAS domain L1S45_07455 PF00291 Pyridoxal-phosphate dependent enzyme L1S45_07460 PF03466 LysR substrate binding domain L1S45_07460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_07465 PF18766 SWI2/SNF2 ATPase L1S45_07465 PF11867 Domain of unknown function (DUF3387) L1S45_07465 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) L1S45_07470 PF01420 Type I restriction modification DNA specificity domain L1S45_07475 PF02384 N-6 DNA Methylase L1S45_07480 PF14338 Mrr N-terminal domain L1S45_07480 PF04471 Restriction endonuclease L1S45_07490 PF01668 SmpB protein L1S45_07495 PF03364 Polyketide cyclase / dehydrase and lipid transport L1S45_07500 PF03658 RnfH family Ubiquitin L1S45_07505 PF13460 NAD(P)H-binding L1S45_07510 PF04355 SmpA / OmlA family L1S45_07515 PF00465 Iron-containing alcohol dehydrogenase L1S45_07520 PF01048 Phosphorylase superfamily L1S45_07525 PF00849 RNA pseudouridylate synthase L1S45_07530 PF01156 Inosine-uridine preferring nucleoside hydrolase L1S45_07545 PF07509 Protein of unknown function (DUF1523) L1S45_07550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_07550 PF00672 HAMP domain L1S45_07550 PF12729 Four helix bundle sensory module for signal transduction L1S45_07555 PF01810 LysE type translocator L1S45_07565 PF02080 TrkA-C domain L1S45_07565 PF00999 Sodium/hydrogen exchanger family L1S45_07565 PF03471 Transporter associated domain L1S45_07575 PF03471 Transporter associated domain L1S45_07575 PF00999 Sodium/hydrogen exchanger family L1S45_07575 PF02080 TrkA-C domain L1S45_07585 PF02557 D-alanyl-D-alanine carboxypeptidase L1S45_07590 PF07687 Peptidase dimerisation domain L1S45_07590 PF01546 Peptidase family M20/M25/M40 L1S45_07595 PF03960 ArsC family L1S45_07600 PF02796 Helix-turn-helix domain of resolvase L1S45_07600 PF00239 Resolvase, N terminal domain L1S45_07605 PF13614 AAA domain L1S45_07610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_07610 PF03466 LysR substrate binding domain L1S45_07620 PF03606 C4-dicarboxylate anaerobic carrier L1S45_07625 PF07687 Peptidase dimerisation domain L1S45_07625 PF01546 Peptidase family M20/M25/M40 L1S45_07635 PF03605 Anaerobic c4-dicarboxylate membrane transporter L1S45_07640 PF01336 OB-fold nucleic acid binding domain L1S45_07640 PF00152 tRNA synthetases class II (D, K and N) L1S45_07655 PF00202 Aminotransferase class-III L1S45_07660 PF06968 Biotin and Thiamin Synthesis associated domain L1S45_07660 PF04055 Radical SAM superfamily L1S45_07665 PF00155 Aminotransferase class I and II L1S45_07670 PF12697 Alpha/beta hydrolase family L1S45_07670 PF08241 Methyltransferase domain L1S45_07680 PF01435 Peptidase family M48 L1S45_07685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_07685 PF08447 PAS fold L1S45_07685 PF13426 PAS domain L1S45_07690 PF03476 MOSC N-terminal beta barrel domain L1S45_07690 PF03473 MOSC domain L1S45_07690 PF03476 MOSC N-terminal beta barrel domain L1S45_07690 PF03473 MOSC domain L1S45_07690 PF00111 2Fe-2S iron-sulfur cluster binding domain L1S45_07690 PF00111 2Fe-2S iron-sulfur cluster binding domain L1S45_07695 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster L1S45_07695 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region L1S45_07695 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_07700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L1S45_07700 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg L1S45_07700 PF10371 Domain of unknown function L1S45_07700 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II L1S45_07700 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase L1S45_07705 PF01804 Penicillin amidase L1S45_07710 PF02311 AraC-like ligand binding domain L1S45_07710 PF12833 Helix-turn-helix domain L1S45_07715 PF04325 Protein of unknown function (DUF465) L1S45_07725 PF01554 MatE L1S45_07745 PF00291 Pyridoxal-phosphate dependent enzyme L1S45_07755 PF00465 Iron-containing alcohol dehydrogenase L1S45_07765 PF08359 YsiA-like protein, C-terminal region L1S45_07765 PF00440 Bacterial regulatory proteins, tetR family L1S45_07770 PF00171 Aldehyde dehydrogenase family L1S45_07780 PF00877 NlpC/P60 family L1S45_07785 PF12563 Hemolytic toxin N terminal L1S45_07785 PF07968 Leukocidin/Hemolysin toxin family L1S45_07790 PF03466 LysR substrate binding domain L1S45_07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_07795 PF10417 C-terminal domain of 1-Cys peroxiredoxin L1S45_07795 PF00578 AhpC/TSA family L1S45_07815 PF08003 Protein of unknown function (DUF1698) L1S45_07820 PF13649 Methyltransferase domain L1S45_07825 PF01904 Protein of unknown function DUF72 L1S45_07830 PF02938 GAD domain L1S45_07830 PF00152 tRNA synthetases class II (D, K and N) L1S45_07830 PF01336 OB-fold nucleic acid binding domain L1S45_07835 PF01709 Transcriptional regulator L1S45_07840 PF08019 Phosphoethanolamine transferase EptA/EptB L1S45_07840 PF00884 Sulfatase L1S45_07845 PF01047 MarR family L1S45_07845 PF00480 ROK family L1S45_07850 PF01979 Amidohydrolase family L1S45_07855 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase L1S45_07860 PF02378 Phosphotransferase system, EIIC L1S45_07860 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 L1S45_07860 PF00367 phosphotransferase system, EIIB L1S45_07865 PF03173 Putative carbohydrate binding domain L1S45_07865 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain L1S45_07865 PF00728 Glycosyl hydrolase family 20, catalytic domain L1S45_07865 PF02838 Glycosyl hydrolase family 20, domain 2 L1S45_07870 PF00749 tRNA synthetases class I (E and Q), catalytic domain L1S45_07870 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain L1S45_07875 PF01475 Ferric uptake regulator family L1S45_07885 PF00258 Flavodoxin L1S45_07890 PF01402 Ribbon-helix-helix protein, copG family L1S45_07900 PF12697 Alpha/beta hydrolase family L1S45_07905 PF03925 SeqA protein C-terminal domain L1S45_07905 PF17206 SeqA protein N-terminal domain L1S45_07910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L1S45_07910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L1S45_07910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L1S45_07910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L1S45_07920 PF01047 MarR family L1S45_07935 PF13406 Transglycosylase SLT domain L1S45_07940 PF01066 CDP-alcohol phosphatidyltransferase L1S45_07945 PF00005 ABC transporter L1S45_07955 PF13416 Bacterial extracellular solute-binding protein L1S45_07960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L1S45_07960 PF00403 Heavy-metal-associated domain L1S45_07960 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_07965 PF02627 Carboxymuconolactone decarboxylase family L1S45_07975 PF01625 Peptide methionine sulfoxide reductase L1S45_07980 PF05698 Bacterial trigger factor protein (TF) C-terminus L1S45_07990 PF01103 Surface antigen L1S45_07990 PF07244 Surface antigen variable number repeat L1S45_07990 PF17243 POTRA domain TamA domain 1 L1S45_07995 PF04357 TamB, inner membrane protein subunit of TAM complex L1S45_08015 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein L1S45_08020 PF00990 Diguanylate cyclase, GGDEF domain L1S45_08020 PF00563 EAL domain L1S45_08020 PF03707 Bacterial signalling protein N terminal repeat L1S45_08025 PF01464 Transglycosylase SLT domain L1S45_08025 PF14718 Soluble lytic murein transglycosylase L domain L1S45_08030 PF00356 Bacterial regulatory proteins, lacI family L1S45_08040 PF03061 Thioesterase superfamily L1S45_08050 PF03372 Endonuclease/Exonuclease/phosphatase family L1S45_08055 PF01476 LysM domain L1S45_08055 PF01464 Transglycosylase SLT domain L1S45_08065 PF16123 Hydroxyacylglutathione hydrolase C-terminus L1S45_08065 PF00753 Metallo-beta-lactamase superfamily L1S45_08070 PF08241 Methyltransferase domain L1S45_08075 PF00075 RNase H L1S45_08080 PF00929 Exonuclease L1S45_08090 PF11849 Domain of unknown function (DUF3369) L1S45_08095 PF09317 Domain of unknown function (DUF1974) L1S45_08095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L1S45_08095 PF02770 Acyl-CoA dehydrogenase, middle domain L1S45_08095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L1S45_08100 PF13580 SIS domain L1S45_08105 PF13230 Glutamine amidotransferases class-II L1S45_08115 PF01933 Uncharacterised protein family UPF0052 L1S45_08125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_08125 PF00512 His Kinase A (phospho-acceptor) domain L1S45_08125 PF09456 RcsC Alpha-Beta-Loop (ABL) L1S45_08125 PF00072 Response regulator receiver domain L1S45_08135 PF00196 Bacterial regulatory proteins, luxR family L1S45_08135 PF00072 Response regulator receiver domain L1S45_08140 PF00672 HAMP domain L1S45_08140 PF07730 Histidine kinase L1S45_08140 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term L1S45_08140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_08145 PF06463 Molybdenum Cofactor Synthesis C L1S45_08145 PF04055 Radical SAM superfamily L1S45_08150 PF00037 4Fe-4S binding domain L1S45_08150 PF12800 4Fe-4S binding domain L1S45_08150 PF13187 4Fe-4S dicluster domain L1S45_08160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain L1S45_08160 PF00384 Molybdopterin oxidoreductase L1S45_08160 PF01568 Molydopterin dinucleotide binding domain L1S45_08160 PF10518 TAT (twin-arginine translocation) pathway signal sequence L1S45_08165 PF12800 4Fe-4S binding domain L1S45_08165 PF12838 4Fe-4S dicluster domain L1S45_08170 PF12801 4Fe-4S binding domain L1S45_08170 PF13237 4Fe-4S dicluster domain L1S45_08175 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) L1S45_08180 PF03264 NapC/NirT cytochrome c family, N-terminal region L1S45_08185 PF00994 Probable molybdopterin binding domain L1S45_08190 PF01967 MoaC family L1S45_08195 PF02597 ThiS family L1S45_08200 PF02391 MoaE protein L1S45_08210 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_08215 PF03459 TOBE domain L1S45_08215 PF00005 ABC transporter L1S45_08220 PF00561 alpha/beta hydrolase fold L1S45_08225 PF06406 StbA protein L1S45_08235 PF06291 Bor protein L1S45_08240 PF06291 Bor protein L1S45_08245 PF00899 ThiF family L1S45_08250 PF00994 Probable molybdopterin binding domain L1S45_08250 PF03454 MoeA C-terminal region (domain IV) L1S45_08250 PF03453 MoeA N-terminal region (domain I and II) L1S45_08255 PF01227 GTP cyclohydrolase I L1S45_08260 PF00672 HAMP domain L1S45_08260 PF17200 Single Cache domain 2 L1S45_08260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_08265 PF01268 Formate--tetrahydrofolate ligase L1S45_08275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_08275 PF03466 LysR substrate binding domain L1S45_08280 PF04264 YceI-like domain L1S45_08305 PF07687 Peptidase dimerisation domain L1S45_08305 PF01546 Peptidase family M20/M25/M40 L1S45_08315 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain L1S45_08315 PF17810 Arginine decarboxylase helical bundle domain L1S45_08315 PF17944 Arginine decarboxylase C-terminal helical extension L1S45_08325 PF14863 Alkyl sulfatase dimerisation L1S45_08325 PF14864 Alkyl sulfatase C-terminal L1S45_08325 PF00753 Metallo-beta-lactamase superfamily L1S45_08330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_08330 PF03466 LysR substrate binding domain L1S45_08345 PF00672 HAMP domain L1S45_08345 PF12729 Four helix bundle sensory module for signal transduction L1S45_08345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_08355 PF01042 Endoribonuclease L-PSP L1S45_08360 PF03313 Serine dehydratase alpha chain L1S45_08370 PF00300 Histidine phosphatase superfamily (branch 1) L1S45_08375 PF01844 HNH endonuclease L1S45_08385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L1S45_08395 PF00849 RNA pseudouridylate synthase L1S45_08395 PF01479 S4 domain L1S45_08400 PF09101 Exotoxin A binding L1S45_08400 PF09009 Exotoxin A catalytic L1S45_08400 PF09102 Exotoxin A, targeting L1S45_08405 PF07690 Major Facilitator Superfamily L1S45_08415 PF03466 LysR substrate binding domain L1S45_08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_08430 PF10689 Protein of unknown function (DUF2496) L1S45_08445 PF00892 EamA-like transporter family L1S45_08450 PF04391 Protein of unknown function (DUF533) L1S45_08460 PF00155 Aminotransferase class I and II L1S45_08460 PF00392 Bacterial regulatory proteins, gntR family L1S45_08465 PF01654 Cytochrome bd terminal oxidase subunit I L1S45_08470 PF02322 Cytochrome bd terminal oxidase subunit II L1S45_08490 PF05114 Protein of unknown function (DUF692) L1S45_08505 PF07690 Major Facilitator Superfamily L1S45_08510 PF00248 Aldo/keto reductase family L1S45_08550 PF03466 LysR substrate binding domain L1S45_08550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_08560 PF00672 HAMP domain L1S45_08560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_08560 PF02743 Cache domain L1S45_08565 PF02782 FGGY family of carbohydrate kinases, C-terminal domain L1S45_08565 PF00370 FGGY family of carbohydrate kinases, N-terminal domain L1S45_08570 PF00230 Major intrinsic protein L1S45_08575 PF07690 Major Facilitator Superfamily L1S45_08580 PF08220 DeoR-like helix-turn-helix domain L1S45_08580 PF00455 DeoR C terminal sensor domain L1S45_08590 PF01266 FAD dependent oxidoreductase L1S45_08590 PF16901 C-terminal domain of alpha-glycerophosphate oxidase L1S45_08595 PF03009 Glycerophosphoryl diester phosphodiesterase family L1S45_08600 PF00793 DAHP synthetase I family L1S45_08605 PF01817 Chorismate mutase type II L1S45_08605 PF02153 Prephenate dehydrogenase L1S45_08610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_08610 PF03466 LysR substrate binding domain L1S45_08615 PF04219 Protein of unknown function, DUF L1S45_08620 PF03974 Ecotin L1S45_08640 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain L1S45_08640 PF00326 Prolyl oligopeptidase family L1S45_08645 PF07715 TonB-dependent Receptor Plug Domain L1S45_08645 PF00593 TonB dependent receptor L1S45_08650 PF11893 Domain of unknown function (DUF3413) L1S45_08650 PF00884 Sulfatase L1S45_08655 PF07208 Protein of unknown function (DUF1414) L1S45_08660 PF04245 37-kD nucleoid-associated bacterial protein L1S45_08665 PF01547 Bacterial extracellular solute-binding protein L1S45_08670 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_08670 PF14785 Maltose transport system permease protein MalF P2 domain L1S45_08675 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_08680 PF08402 TOBE domain L1S45_08680 PF00005 ABC transporter L1S45_08685 PF03976 Polyphosphate kinase 2 (PPK2) L1S45_08690 PF00561 alpha/beta hydrolase fold L1S45_08700 PF01594 AI-2E family transporter L1S45_08705 PF01206 Sulfurtransferase TusA L1S45_08710 PF01435 Peptidase family M48 L1S45_08710 PF13181 Tetratricopeptide repeat L1S45_08715 PF00578 AhpC/TSA family L1S45_08720 PF03960 ArsC family L1S45_08735 PF04336 Acyl carrier protein phosphodiesterase L1S45_08740 PF01979 Amidohydrolase family L1S45_08745 PF03956 Lysine exporter LysO L1S45_08750 PF00005 ABC transporter L1S45_08755 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_08760 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_08765 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_08775 PF04055 Radical SAM superfamily L1S45_08780 PF03707 Bacterial signalling protein N terminal repeat L1S45_08780 PF00990 Diguanylate cyclase, GGDEF domain L1S45_08780 PF00563 EAL domain L1S45_08785 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_08785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L1S45_08790 PF07678 A-macroglobulin TED domain L1S45_08790 PF01835 MG2 domain L1S45_08790 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain L1S45_08790 PF17962 Bacterial macroglobulin domain 6 L1S45_08790 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain L1S45_08790 PF11974 Bacterial alpha-2-macroglobulin MG3 domain L1S45_08790 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain L1S45_08790 PF07703 Alpha-2-macroglobulin bait region domain L1S45_08790 PF00207 Alpha-2-macroglobulin family L1S45_08795 PF00912 Transglycosylase L1S45_08795 PF06832 Penicillin-Binding Protein C-terminus Family L1S45_08795 PF00905 Penicillin binding protein transpeptidase domain L1S45_08805 PF02568 Thiamine biosynthesis protein (ThiI) L1S45_08805 PF02926 THUMP domain L1S45_08815 PF03458 UPF0126 domain L1S45_08820 PF00669 Bacterial flagellin N-terminal helical region L1S45_08820 PF00700 Bacterial flagellin C-terminal helical region L1S45_08825 PF00700 Bacterial flagellin C-terminal helical region L1S45_08825 PF00669 Bacterial flagellin N-terminal helical region L1S45_08835 PF07196 Flagellin hook IN motif L1S45_08835 PF02465 Flagellar hook-associated protein 2 N-terminus L1S45_08835 PF07195 Flagellar hook-associated protein 2 C-terminus L1S45_08840 PF02561 Flagellar protein FliS L1S45_08855 PF01497 Periplasmic binding protein L1S45_08865 PF01048 Phosphorylase superfamily L1S45_08875 PF02535 ZIP Zinc transporter L1S45_08880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_08880 PF00672 HAMP domain L1S45_08880 PF12729 Four helix bundle sensory module for signal transduction L1S45_08885 PF00459 Inositol monophosphatase family L1S45_08895 PF00043 Glutathione S-transferase, C-terminal domain L1S45_08895 PF02798 Glutathione S-transferase, N-terminal domain L1S45_08900 PF07690 Major Facilitator Superfamily L1S45_08910 PF05164 Cell division protein ZapA L1S45_08915 PF03695 Uncharacterised protein family (UPF0149) L1S45_08920 PF01494 FAD binding domain L1S45_08925 PF01494 FAD binding domain L1S45_08930 PF01571 Aminomethyltransferase folate-binding domain L1S45_08930 PF08669 Glycine cleavage T-protein C-terminal barrel domain L1S45_08935 PF01597 Glycine cleavage H-protein L1S45_08940 PF02347 Glycine cleavage system P-protein L1S45_08950 PF03496 ADP-ribosyltransferase exoenzyme L1S45_08955 PF01312 FlhB HrpN YscU SpaS Family L1S45_08960 PF01311 Bacterial export proteins, family 1 L1S45_08965 PF01313 Bacterial export proteins, family 3 L1S45_08970 PF00813 FliP family L1S45_08975 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term L1S45_08980 PF02120 Flagellar hook-length control protein FliK L1S45_08990 PF02874 ATP synthase alpha/beta family, beta-barrel domain L1S45_08990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L1S45_08990 PF18269 T3SS EscN ATPase C-terminal domain L1S45_08995 PF07201 HrpJ-like domain L1S45_09000 PF09059 TyeA L1S45_09020 PF00771 FHIPEP family L1S45_09025 PF09621 Type III secretion system regulator (LcrR) L1S45_09035 PF04792 V antigen (LcrV) protein L1S45_09040 PF07720 Tetratricopeptide repeat L1S45_09045 PF04888 Secretion system effector C (SseC) like family L1S45_09050 PF05844 YopD protein L1S45_09055 PF05932 Tir chaperone protein (CesT) family L1S45_09070 PF12833 Helix-turn-helix domain L1S45_09075 PF16806 Antiactivator protein ExsD L1S45_09080 PF05932 Tir chaperone protein (CesT) family L1S45_09085 PF00263 Bacterial type II and III secretion system protein L1S45_09085 PF03958 Bacterial type II/III secretion system short domain L1S45_09090 PF16697 Inner membrane component of T3SS, cytoplasmic domain L1S45_09090 PF16693 Inner membrane component of T3SS, periplasmic domain L1S45_09100 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF L1S45_09105 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) L1S45_09110 PF09025 YopR, type III needle-polymerisation regulator L1S45_09115 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI L1S45_09120 PF01514 Secretory protein of YscJ/FliF family L1S45_09130 PF02108 Flagellar assembly protein FliH L1S45_09150 PF00884 Sulfatase L1S45_09150 PF08019 Phosphoethanolamine transferase EptA/EptB L1S45_09155 PF09924 Uncharacterised conserved protein (DUF2156) L1S45_09155 PF03706 Lysylphosphatidylglycerol synthase TM region L1S45_09165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_09165 PF08447 PAS fold L1S45_09170 PF00563 EAL domain L1S45_09170 PF13426 PAS domain L1S45_09170 PF00990 Diguanylate cyclase, GGDEF domain L1S45_09175 PF00849 RNA pseudouridylate synthase L1S45_09185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L1S45_09190 PF04209 homogentisate 1,2-dioxygenase L1S45_09200 PF14497 Glutathione S-transferase, C-terminal domain L1S45_09200 PF02798 Glutathione S-transferase, N-terminal domain L1S45_09210 PF00733 Asparagine synthase L1S45_09210 PF13537 Glutamine amidotransferase domain L1S45_09220 PF00999 Sodium/hydrogen exchanger family L1S45_09220 PF02254 TrkA-N domain L1S45_09225 PF13344 Haloacid dehalogenase-like hydrolase L1S45_09230 PF00962 Adenosine/AMP deaminase L1S45_09235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L1S45_09240 PF03471 Transporter associated domain L1S45_09240 PF03741 Integral membrane protein TerC family L1S45_09250 PF02913 FAD linked oxidases, C-terminal domain L1S45_09250 PF01565 FAD binding domain L1S45_09250 PF13183 4Fe-4S dicluster domain L1S45_09260 PF03061 Thioesterase superfamily L1S45_09265 PF03880 DbpA RNA binding domain L1S45_09265 PF00270 DEAD/DEAH box helicase L1S45_09265 PF00271 Helicase conserved C-terminal domain L1S45_09270 PF13726 Na+-H+ antiporter family L1S45_09270 PF03553 Na+/H+ antiporter family L1S45_09275 PF00929 Exonuclease L1S45_09280 PF12729 Four helix bundle sensory module for signal transduction L1S45_09280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_09280 PF00672 HAMP domain L1S45_09285 PF18393 MotY N-terminal domain L1S45_09285 PF00691 OmpA family L1S45_09290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L1S45_09295 PF10576 Iron-sulfur binding domain of endonuclease III L1S45_09295 PF00633 Helix-hairpin-helix motif L1S45_09295 PF00730 HhH-GPD superfamily base excision DNA repair protein L1S45_09300 PF02508 Rnf-Nqr subunit, membrane protein L1S45_09305 PF04205 FMN-binding domain L1S45_09310 PF03116 NQR2, RnfD, RnfE family L1S45_09315 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit L1S45_09315 PF12838 4Fe-4S dicluster domain L1S45_09315 PF13375 RnfC Barrel sandwich hybrid domain L1S45_09315 PF10531 SLBB domain L1S45_09320 PF04060 Putative Fe-S cluster L1S45_09325 PF02508 Rnf-Nqr subunit, membrane protein L1S45_09330 PF00892 EamA-like transporter family L1S45_09345 PF12241 Trans-2-enoyl-CoA reductase catalytic region L1S45_09345 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase L1S45_09345 PF07055 Enoyl reductase FAD binding domain L1S45_09350 PF03606 C4-dicarboxylate anaerobic carrier L1S45_09355 PF00924 Mechanosensitive ion channel L1S45_09355 PF12795 Mechanosensitive ion channel porin domain L1S45_09355 PF12794 Mechanosensitive ion channel inner membrane domain 1 L1S45_09360 PF00155 Aminotransferase class I and II L1S45_09370 PF00462 Glutaredoxin L1S45_09375 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family L1S45_09380 PF04851 Type III restriction enzyme, res subunit L1S45_09380 PF00271 Helicase conserved C-terminal domain L1S45_09385 PF00529 HlyD membrane-fusion protein of T1SS L1S45_09385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_09390 PF11742 Protein of unknown function (DUF3302) L1S45_09395 PF02554 Carbon starvation protein CstA L1S45_09400 PF00072 Response regulator receiver domain L1S45_09400 PF04397 LytTr DNA-binding domain L1S45_09405 PF06580 Histidine kinase L1S45_09405 PF07694 5TMR of 5TMR-LYT L1S45_09410 PF01966 HD domain L1S45_09415 PF00171 Aldehyde dehydrogenase family L1S45_09415 PF00465 Iron-containing alcohol dehydrogenase L1S45_09425 PF01914 MarC family integral membrane protein L1S45_09430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_09435 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_09440 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_09440 PF12911 N-terminal TM domain of oligopeptide transport permease C L1S45_09445 PF00005 ABC transporter L1S45_09445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_09450 PF00005 ABC transporter L1S45_09450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_09455 PF03741 Integral membrane protein TerC family L1S45_09460 PF01168 Alanine racemase, N-terminal domain L1S45_09460 PF00842 Alanine racemase, C-terminal domain L1S45_09470 PF00375 Sodium:dicarboxylate symporter family L1S45_09485 PF01979 Amidohydrolase family L1S45_09495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_09495 PF00672 HAMP domain L1S45_09500 PF01230 HIT domain L1S45_09535 PF13721 SecD export protein N-terminal TM region L1S45_09535 PF07549 SecD/SecF GG Motif L1S45_09535 PF02355 Protein export membrane protein L1S45_09540 PF02355 Protein export membrane protein L1S45_09540 PF07549 SecD/SecF GG Motif L1S45_09545 PF08447 PAS fold L1S45_09545 PF13426 PAS domain L1S45_09545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_09560 PF05661 Protein of unknown function (DUF808) L1S45_09565 PF01432 Peptidase family M3 L1S45_09565 PF08439 Oligopeptidase F L1S45_09570 PF08439 Oligopeptidase F L1S45_09570 PF01432 Peptidase family M3 L1S45_09575 PF00860 Permease family L1S45_09580 PF05728 Uncharacterised protein family (UPF0227) L1S45_09585 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_09605 PF01906 Putative heavy-metal-binding L1S45_09615 PF02016 LD-carboxypeptidase N-terminal domain L1S45_09615 PF17676 LD-carboxypeptidase C-terminal domain L1S45_09620 PF00884 Sulfatase L1S45_09630 PF00696 Amino acid kinase family L1S45_09630 PF01842 ACT domain L1S45_09635 PF00583 Acetyltransferase (GNAT) family L1S45_09635 PF00696 Amino acid kinase family L1S45_09640 PF01625 Peptide methionine sulfoxide reductase L1S45_09660 PF00561 alpha/beta hydrolase fold L1S45_09665 PF03466 LysR substrate binding domain L1S45_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_09670 PF02652 L-lactate permease L1S45_09675 PF02754 Cysteine-rich domain L1S45_09680 PF11870 Domain of unknown function (DUF3390) L1S45_09680 PF13183 4Fe-4S dicluster domain L1S45_09680 PF02589 LUD domain L1S45_09685 PF02589 LUD domain L1S45_09690 PF01565 FAD binding domain L1S45_09690 PF02913 FAD linked oxidases, C-terminal domain L1S45_09705 PF05638 Type VI secretion system effector, Hcp L1S45_09710 PF04717 Type VI secretion system, phage-baseplate injector L1S45_09720 PF05593 RHS Repeat L1S45_09720 PF03527 RHS protein L1S45_09740 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath L1S45_09750 PF05947 Type VI secretion system, TssF L1S45_09770 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE L1S45_09780 PF07724 AAA domain (Cdc48 subfamily) L1S45_09780 PF10431 C-terminal, D2-small domain, of ClpB protein L1S45_09780 PF00004 ATPase family associated with various cellular activities (AAA) L1S45_09780 PF17871 AAA lid domain L1S45_09785 PF02954 Bacterial regulatory protein, Fis family L1S45_09785 PF00158 Sigma-54 interaction domain L1S45_09800 PF06761 Intracellular multiplication and human macrophage-killing L1S45_09800 PF14331 ImcF-related N-terminal domain L1S45_09800 PF06744 Type VI secretion protein IcmF C-terminal L1S45_09815 PF04717 Type VI secretion system, phage-baseplate injector L1S45_09820 PF13457 GW (Gly-Tryp) dipeptide domain L1S45_09820 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase L1S45_09850 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain L1S45_09850 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain L1S45_09890 PF03743 Bacterial conjugation TrbI-like protein L1S45_09895 PF03524 Conjugal transfer protein L1S45_09920 PF03135 CagE, TrbE, VirB family, component of type IV transporter system L1S45_09930 PF04956 TrbC/VIRB2 family L1S45_09935 PF00437 Type II/IV secretion system protein L1S45_09945 PF02534 Type IV secretory system Conjugative DNA transfer L1S45_09955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_09955 PF03466 LysR substrate binding domain L1S45_09960 PF00857 Isochorismatase family L1S45_09970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L1S45_09980 PF00857 Isochorismatase family L1S45_09985 PF03466 LysR substrate binding domain L1S45_09985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_09995 PF13533 Biotin-lipoyl like L1S45_10005 PF02321 Outer membrane efflux protein L1S45_10015 PF02777 Iron/manganese superoxide dismutases, C-terminal domain L1S45_10015 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain L1S45_10025 PF10502 Signal peptidase, peptidase S26 L1S45_10040 PF13614 AAA domain L1S45_10070 PF01734 Patatin-like phospholipase L1S45_10085 PF05284 Protein of unknown function (DUF736) L1S45_10105 PF04002 RadC-like JAB domain L1S45_10110 PF04221 RelB antitoxin L1S45_10135 PF00580 UvrD/REP helicase N-terminal domain L1S45_10135 PF13361 UvrD-like helicase C-terminal domain L1S45_10135 PF12705 PD-(D/E)XK nuclease superfamily L1S45_10140 PF17761 DUF1016 N-terminal domain L1S45_10140 PF06250 YhcG PDDEXK nuclease domain L1S45_10150 PF00313 'Cold-shock' DNA-binding domain L1S45_10155 PF02617 ATP-dependent Clp protease adaptor protein ClpS L1S45_10160 PF02861 Clp amino terminal domain, pathogenicity island component L1S45_10160 PF10431 C-terminal, D2-small domain, of ClpB protein L1S45_10160 PF17871 AAA lid domain L1S45_10160 PF07724 AAA domain (Cdc48 subfamily) L1S45_10160 PF00004 ATPase family associated with various cellular activities (AAA) L1S45_10165 PF01176 Translation initiation factor 1A / IF-1 L1S45_10170 PF04376 Arginine-tRNA-protein transferase, N terminus L1S45_10170 PF04377 Arginine-tRNA-protein transferase, C terminus L1S45_10175 PF03588 Leucyl/phenylalanyl-tRNA protein transferase L1S45_10180 PF05433 Glycine zipper 2TM domain L1S45_10185 PF17158 Membrane-associated sensor, integral membrane domain L1S45_10185 PF00990 Diguanylate cyclase, GGDEF domain L1S45_10190 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_10195 PF01037 Lrp/AsnC ligand binding domain L1S45_10200 PF01580 FtsK/SpoIIIE family L1S45_10200 PF13491 4TM region of DNA translocase FtsK/SpoIIIE L1S45_10200 PF17854 FtsK alpha domain L1S45_10200 PF09397 Ftsk gamma domain L1S45_10205 PF03548 Outer membrane lipoprotein carrier protein LolA L1S45_10210 PF12002 MgsA AAA+ ATPase C terminal L1S45_10210 PF00004 ATPase family associated with various cellular activities (AAA) L1S45_10210 PF16193 AAA C-terminal domain L1S45_10215 PF02403 Seryl-tRNA synthetase N-terminal domain L1S45_10215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L1S45_10220 PF02674 Colicin V production protein L1S45_10225 PF00156 Phosphoribosyl transferase domain L1S45_10230 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) L1S45_10235 PF00005 ABC transporter L1S45_10240 PF00005 ABC transporter L1S45_10240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_10245 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_10245 PF12911 N-terminal TM domain of oligopeptide transport permease C L1S45_10250 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_10255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_10260 PF00158 Sigma-54 interaction domain L1S45_10260 PF02954 Bacterial regulatory protein, Fis family L1S45_10265 PF04012 PspA/IM30 family L1S45_10270 PF06667 Phage shock protein B L1S45_10280 PF04317 YcjX-like family, DUF463 L1S45_10285 PF05128 Domain of unknown function (DUF697) L1S45_10290 PF00351 Biopterin-dependent aromatic amino acid hydroxylase L1S45_10305 PF00158 Sigma-54 interaction domain L1S45_10305 PF18024 Helix-turn-helix domain L1S45_10310 PF13689 YfiR/HmsC-like L1S45_10315 PF03707 Bacterial signalling protein N terminal repeat L1S45_10315 PF00563 EAL domain L1S45_10315 PF00990 Diguanylate cyclase, GGDEF domain L1S45_10320 PF00691 OmpA family L1S45_10325 PF03741 Integral membrane protein TerC family L1S45_10335 PF08891 YfcL protein L1S45_10340 PF00501 AMP-binding enzyme L1S45_10345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region L1S45_10345 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region L1S45_10350 PF04172 LrgB-like family L1S45_10355 PF03788 LrgA family L1S45_10370 PF08411 Exonuclease C-terminal L1S45_10370 PF00929 Exonuclease L1S45_10375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_10375 PF03466 LysR substrate binding domain L1S45_10380 PF02678 Pirin L1S45_10380 PF05726 Pirin C-terminal cupin domain L1S45_10385 PF00444 Ribosomal protein L36 L1S45_10390 PF01197 Ribosomal protein L31 L1S45_10405 PF01863 Protein of unknown function DUF45 L1S45_10420 PF03606 C4-dicarboxylate anaerobic carrier L1S45_10430 PF05430 S-adenosyl-L-methionine-dependent methyltransferase L1S45_10430 PF01266 FAD dependent oxidoreductase L1S45_10435 PF02801 Beta-ketoacyl synthase, C-terminal domain L1S45_10435 PF00109 Beta-ketoacyl synthase, N-terminal domain L1S45_10450 PF00285 Citrate synthase, C-terminal domain L1S45_10455 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit L1S45_10460 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit L1S45_10465 PF02910 Fumarate reductase flavoprotein C-term L1S45_10465 PF00890 FAD binding domain L1S45_10470 PF13085 2Fe-2S iron-sulfur cluster binding domain L1S45_10475 PF16870 2-oxoglutarate dehydrogenase C-terminal L1S45_10475 PF02779 Transketolase, pyrimidine binding domain L1S45_10475 PF16078 2-oxoglutarate dehydrogenase N-terminus L1S45_10475 PF00676 Dehydrogenase E1 component L1S45_10480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L1S45_10480 PF00364 Biotin-requiring enzyme L1S45_10480 PF02817 e3 binding domain L1S45_10485 PF08442 ATP-grasp domain L1S45_10485 PF00549 CoA-ligase L1S45_10490 PF02629 CoA binding domain L1S45_10490 PF00549 CoA-ligase L1S45_10500 PF00106 short chain dehydrogenase L1S45_10510 PF01810 LysE type translocator L1S45_10515 PF03692 Putative zinc- or iron-chelating domain L1S45_10520 PF01266 FAD dependent oxidoreductase L1S45_10525 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_10530 PF00005 ABC transporter L1S45_10540 PF07702 UTRA domain L1S45_10540 PF00392 Bacterial regulatory proteins, gntR family L1S45_10545 PF00266 Aminotransferase class-V L1S45_10550 PF00202 Aminotransferase class-III L1S45_10560 PF01228 Glycine radical L1S45_10560 PF02901 Pyruvate formate lyase-like L1S45_10565 PF01226 Formate/nitrite transporter L1S45_10570 PF18381 YcaO cyclodehydratase C-terminal domain L1S45_10570 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding L1S45_10575 PF00893 Small Multidrug Resistance protein L1S45_10580 PF02774 Semialdehyde dehydrogenase, dimerisation domain L1S45_10580 PF01118 Semialdehyde dehydrogenase, NAD binding domain L1S45_10585 PF00675 Insulinase (Peptidase family M16) L1S45_10585 PF05193 Peptidase M16 inactive domain L1S45_10590 PF01053 Cys/Met metabolism PLP-dependent enzyme L1S45_10600 PF13460 NAD(P)H-binding L1S45_10605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_10605 PF03466 LysR substrate binding domain L1S45_10610 PF00106 short chain dehydrogenase L1S45_10615 PF12833 Helix-turn-helix domain L1S45_10620 PF07715 TonB-dependent Receptor Plug Domain L1S45_10620 PF00593 TonB dependent receptor L1S45_10630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_10630 PF03466 LysR substrate binding domain L1S45_10635 PF08267 Cobalamin-independent synthase, N-terminal domain L1S45_10635 PF01717 Cobalamin-independent synthase, Catalytic domain L1S45_10650 PF00571 CBS domain L1S45_10650 PF00478 IMP dehydrogenase / GMP reductase domain L1S45_10655 PF01266 FAD dependent oxidoreductase L1S45_10660 PF04244 Deoxyribodipyrimidine photo-lyase-related protein L1S45_10670 PF01212 Beta-eliminating lyase L1S45_10675 PF00768 D-alanyl-D-alanine carboxypeptidase L1S45_10685 PF03918 Cytochrome C biogenesis protein L1S45_10690 PF08534 Redoxin L1S45_10695 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal L1S45_10695 PF01578 Cytochrome C assembly protein L1S45_10700 PF03916 Polysulphide reductase, NrfD L1S45_10705 PF00037 4Fe-4S binding domain L1S45_10705 PF13247 4Fe-4S dicluster domain L1S45_10710 PF13435 Cytochrome c554 and c-prime L1S45_10710 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) L1S45_10715 PF02335 Cytochrome c552 L1S45_10720 PF13183 4Fe-4S dicluster domain L1S45_10720 PF02754 Cysteine-rich domain L1S45_10725 PF00890 FAD binding domain L1S45_10730 PF04324 BFD-like [2Fe-2S] binding domain L1S45_10730 PF01266 FAD dependent oxidoreductase L1S45_10735 PF02810 SEC-C motif L1S45_10740 PF17200 Single Cache domain 2 L1S45_10740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_10740 PF00672 HAMP domain L1S45_10745 PF01047 MarR family L1S45_10745 PF00480 ROK family L1S45_10750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_10750 PF00989 PAS fold L1S45_10750 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain L1S45_10750 PF17203 Single cache domain 3 L1S45_10755 PF08279 HTH domain L1S45_10755 PF12431 Transcriptional regulator L1S45_10755 PF00072 Response regulator receiver domain L1S45_10760 PF01970 Tripartite tricarboxylate transporter TctA family L1S45_10770 PF03401 Tripartite tricarboxylate transporter family receptor L1S45_10775 PF01464 Transglycosylase SLT domain L1S45_10775 PF10145 Phage-related minor tail protein L1S45_10775 PF01551 Peptidase family M23 L1S45_10780 PF02080 TrkA-C domain L1S45_10780 PF06826 Predicted Permease Membrane Region L1S45_10790 PF12344 Ultra-violet resistance protein B L1S45_10790 PF17757 UvrB interaction domain L1S45_10790 PF02151 UvrB/uvrC motif L1S45_10790 PF00271 Helicase conserved C-terminal domain L1S45_10790 PF04851 Type III restriction enzyme, res subunit L1S45_10800 PF09335 SNARE associated Golgi protein L1S45_10805 PF02600 Disulfide bond formation protein DsbB L1S45_10810 PF06450 Bacterial Na+/H+ antiporter B (NhaB) L1S45_10815 PF07840 FadR C-terminal domain L1S45_10815 PF00392 Bacterial regulatory proteins, gntR family L1S45_10820 PF04293 SpoVR like protein L1S45_10825 PF04285 Protein of unknown function (DUF444) L1S45_10830 PF08298 PrkA AAA domain L1S45_10830 PF06798 PrkA serine protein kinase C-terminal domain L1S45_10835 PF00270 DEAD/DEAH box helicase L1S45_10835 PF00271 Helicase conserved C-terminal domain L1S45_10835 PF00570 HRDC domain L1S45_10835 PF16124 RecQ zinc-binding L1S45_10835 PF09382 RQC domain L1S45_10840 PF00375 Sodium:dicarboxylate symporter family L1S45_10845 PF03222 Tryptophan/tyrosine permease family L1S45_10850 PF00293 NUDIX domain L1S45_10855 PF00425 chorismate binding enzyme L1S45_10855 PF04715 Anthranilate synthase component I, N terminal region L1S45_10875 PF00343 Carbohydrate phosphorylase L1S45_10880 PF00939 Sodium:sulfate symporter transmembrane region L1S45_10885 PF00085 Thioredoxin L1S45_10890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_10890 PF00072 Response regulator receiver domain L1S45_10890 PF00672 HAMP domain L1S45_10890 PF00512 His Kinase A (phospho-acceptor) domain L1S45_10890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) L1S45_10890 PF01627 Hpt domain L1S45_10895 PF00664 ABC transporter transmembrane region L1S45_10895 PF00005 ABC transporter L1S45_10900 PF00005 ABC transporter L1S45_10900 PF00664 ABC transporter transmembrane region L1S45_10915 PF01575 MaoC like domain L1S45_10920 PF00561 alpha/beta hydrolase fold L1S45_10920 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus L1S45_10940 PF08543 Phosphomethylpyrimidine kinase L1S45_10945 PF03992 Antibiotic biosynthesis monooxygenase L1S45_10950 PF00465 Iron-containing alcohol dehydrogenase L1S45_10955 PF00583 Acetyltransferase (GNAT) family L1S45_10970 PF01928 CYTH domain L1S45_10985 PF13673 Acetyltransferase (GNAT) domain L1S45_10990 PF00270 DEAD/DEAH box helicase L1S45_10990 PF00271 Helicase conserved C-terminal domain L1S45_10995 PF00255 Glutathione peroxidase L1S45_11005 PF01820 D-ala D-ala ligase N-terminus L1S45_11005 PF07478 D-ala D-ala ligase C-terminus L1S45_11010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L1S45_11010 PF18029 Glyoxalase-like domain L1S45_11015 PF03942 DTW domain L1S45_11020 PF01925 Sulfite exporter TauE/SafE L1S45_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_11025 PF03466 LysR substrate binding domain L1S45_11035 PF14525 AraC-binding-like domain L1S45_11035 PF12833 Helix-turn-helix domain L1S45_11040 PF11398 Protein of unknown function (DUF2813) L1S45_11050 PF00128 Alpha amylase, catalytic domain L1S45_11050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) L1S45_11095 PF00883 Cytosol aminopeptidase family, catalytic domain L1S45_11095 PF02789 Cytosol aminopeptidase family, N-terminal domain L1S45_11100 PF13419 Haloacid dehalogenase-like hydrolase L1S45_11105 PF07687 Peptidase dimerisation domain L1S45_11105 PF01546 Peptidase family M20/M25/M40 L1S45_11110 PF00365 Phosphofructokinase L1S45_11115 PF00121 Triosephosphate isomerase L1S45_11120 PF02698 DUF218 domain L1S45_11125 PF13847 Methyltransferase domain L1S45_11130 PF03882 MukF winged-helix domain L1S45_11130 PF17193 MukF C-terminal domain L1S45_11130 PF17192 MukF middle domain L1S45_11135 PF04288 MukE-like family L1S45_11140 PF16330 MukB hinge domain L1S45_11140 PF04310 MukB N-terminal L1S45_11145 PF03330 Lytic transglycolase L1S45_11170 PF01327 Polypeptide deformylase L1S45_11195 PF02567 Phenazine biosynthesis-like protein L1S45_11200 PF03831 PhnA domain L1S45_11200 PF08274 PhnA Zinc-Ribbon L1S45_11210 PF08329 Chitinase A, N-terminal domain L1S45_11210 PF00704 Glycosyl hydrolases family 18 L1S45_11225 PF00300 Histidine phosphatase superfamily (branch 1) L1S45_11230 PF08448 PAS fold L1S45_11230 PF00990 Diguanylate cyclase, GGDEF domain L1S45_11240 PF01713 Smr domain L1S45_11245 PF05175 Methyltransferase small domain L1S45_11250 PF01264 Chorismate synthase L1S45_11260 PF00271 Helicase conserved C-terminal domain L1S45_11260 PF00270 DEAD/DEAH box helicase L1S45_11265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_11275 PF03222 Tryptophan/tyrosine permease family L1S45_11280 PF00356 Bacterial regulatory proteins, lacI family L1S45_11280 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family L1S45_11285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L1S45_11285 PF00381 PTS HPr component phosphorylation site L1S45_11290 PF00294 pfkB family carbohydrate kinase L1S45_11295 PF02378 Phosphotransferase system, EIIC L1S45_11295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit L1S45_11300 PF06945 Protein of unknown function (DUF1289) L1S45_11305 PF03562 MltA specific insert domain L1S45_11305 PF06725 3D domain L1S45_11310 PF00111 2Fe-2S iron-sulfur cluster binding domain L1S45_11315 PF00268 Ribonucleotide reductase, small chain L1S45_11320 PF00317 Ribonucleotide reductase, all-alpha domain L1S45_11320 PF02867 Ribonucleotide reductase, barrel domain L1S45_11320 PF03477 ATP cone domain L1S45_11325 PF13419 Haloacid dehalogenase-like hydrolase L1S45_11335 PF03989 DNA gyrase C-terminal domain, beta-propeller L1S45_11335 PF00521 DNA gyrase/topoisomerase IV, subunit A L1S45_11345 PF04055 Radical SAM superfamily L1S45_11355 PF02824 TGS domain L1S45_11355 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L1S45_11355 PF03129 Anticodon binding domain L1S45_11355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L1S45_11360 PF05198 Translation initiation factor IF-3, N-terminal domain L1S45_11360 PF00707 Translation initiation factor IF-3, C-terminal domain L1S45_11365 PF01632 Ribosomal protein L35 L1S45_11370 PF00453 Ribosomal protein L20 L1S45_11375 PF01409 tRNA synthetases class II core domain (F) L1S45_11375 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain L1S45_11380 PF03483 B3/4 domain L1S45_11380 PF03484 tRNA synthetase B5 domain L1S45_11380 PF03147 Ferredoxin-fold anticodon binding domain L1S45_11380 PF01588 Putative tRNA binding domain L1S45_11380 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain L1S45_11385 PF00216 Bacterial DNA-binding protein L1S45_11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_11390 PF00512 His Kinase A (phospho-acceptor) domain L1S45_11390 PF09456 RcsC Alpha-Beta-Loop (ABL) L1S45_11390 PF00072 Response regulator receiver domain L1S45_11405 PF02146 Sir2 family L1S45_11415 PF00990 Diguanylate cyclase, GGDEF domain L1S45_11415 PF00563 EAL domain L1S45_11415 PF03707 Bacterial signalling protein N terminal repeat L1S45_11420 PF00356 Bacterial regulatory proteins, lacI family L1S45_11425 PF00294 pfkB family carbohydrate kinase L1S45_11430 PF13407 Periplasmic binding protein domain L1S45_11435 PF02653 Branched-chain amino acid transport system / permease component L1S45_11440 PF00005 ABC transporter L1S45_11445 PF05025 RbsD / FucU transport protein family L1S45_11450 PF13417 Glutathione S-transferase, N-terminal domain L1S45_11465 PF01171 PP-loop family L1S45_11470 PF00582 Universal stress protein family L1S45_11475 PF00027 Cyclic nucleotide-binding domain L1S45_11475 PF13545 Crp-like helix-turn-helix domain L1S45_11490 PF00403 Heavy-metal-associated domain L1S45_11500 PF13442 Cytochrome C oxidase, cbb3-type, subunit III L1S45_11500 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP L1S45_11515 PF00115 Cytochrome C and Quinol oxidase polypeptide I L1S45_11525 PF13185 GAF domain L1S45_11530 PF04352 ProQ/FINO family L1S45_11530 PF17516 ProQ C-terminal domain L1S45_11535 PF17804 Tail specific protease N-terminal domain L1S45_11535 PF00595 PDZ domain L1S45_11535 PF03572 Peptidase family S41 L1S45_11535 PF11818 C-terminal domain of tail specific protease (DUF3340) L1S45_11540 PF11940 Domain of unknown function (DUF3458) Ig-like fold L1S45_11540 PF17432 Domain of unknown function (DUF3458_C) ARM repeats L1S45_11540 PF01433 Peptidase family M1 domain L1S45_11550 PF05088 Bacterial NAD-glutamate dehydrogenase L1S45_11555 PF01180 Dihydroorotate dehydrogenase L1S45_11560 PF07126 Cell-division protein ZapC L1S45_11565 PF10672 S-adenosylmethionine-dependent methyltransferase L1S45_11565 PF02926 THUMP domain L1S45_11565 PF01170 Putative RNA methylase family UPF0020 L1S45_11575 PF12848 ABC transporter L1S45_11575 PF00005 ABC transporter L1S45_11575 PF16326 ABC transporter C-terminal domain L1S45_11585 PF04957 Ribosome modulation factor L1S45_11590 PF07977 FabA-like domain L1S45_11595 PF13654 AAA domain L1S45_11595 PF05362 Lon protease (S16) C-terminal proteolytic domain L1S45_11630 PF10734 Protein of unknown function (DUF2523) L1S45_11635 PF05707 Zonular occludens toxin (Zot) L1S45_11665 PF07130 YebG protein L1S45_11675 PF00106 short chain dehydrogenase L1S45_11700 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain L1S45_11700 PF06974 Protein of unknown function (DUF1298) L1S45_11715 PF03972 MmgE/PrpD family L1S45_11720 PF00285 Citrate synthase, C-terminal domain L1S45_11735 PF04403 Paraquat-inducible protein A L1S45_11740 PF02470 MlaD protein L1S45_11745 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF L1S45_11745 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF L1S45_11745 PF01189 16S rRNA methyltransferase RsmB/F L1S45_11755 PF00589 Phage integrase family L1S45_11760 PF01026 TatD related DNase L1S45_11765 PF09115 DNA polymerase III, delta subunit, C terminal L1S45_11770 PF02223 Thymidylate kinase L1S45_11775 PF02618 YceG-like family L1S45_11780 PF01063 Amino-transferase class IV L1S45_11785 PF02801 Beta-ketoacyl synthase, C-terminal domain L1S45_11785 PF00109 Beta-ketoacyl synthase, N-terminal domain L1S45_11790 PF00550 Phosphopantetheine attachment site L1S45_11800 PF00698 Acyl transferase domain L1S45_11805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal L1S45_11805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III L1S45_11810 PF02504 Fatty acid synthesis protein L1S45_11815 PF01783 Ribosomal L32p protein family L1S45_11820 PF02620 Large ribosomal RNA subunit accumulation protein YceD L1S45_11830 PF02545 Maf-like protein L1S45_11835 PF13419 Haloacid dehalogenase-like hydrolase L1S45_11840 PF00849 RNA pseudouridylate synthase L1S45_11840 PF01479 S4 domain L1S45_11845 PF00575 S1 RNA binding domain L1S45_11845 PF10150 Ribonuclease E/G family L1S45_11845 PF12111 Polyribonucleotide phosphorylase C terminal L1S45_11850 PF01384 Phosphate transporter family L1S45_11855 PF00692 dUTPase L1S45_11860 PF00485 Phosphoribulokinase / Uridine kinase family L1S45_11865 PF10609 NUBPL iron-transfer P-loop NTPase L1S45_11870 PF08264 Anticodon-binding domain of tRNA L1S45_11870 PF09334 tRNA synthetases class I (M) L1S45_11870 PF01588 Putative tRNA binding domain L1S45_11875 PF02798 Glutathione S-transferase, N-terminal domain L1S45_11875 PF00043 Glutathione S-transferase, C-terminal domain L1S45_11880 PF00708 Acylphosphatase L1S45_11885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_11885 PF00672 HAMP domain L1S45_11885 PF12729 Four helix bundle sensory module for signal transduction L1S45_11890 PF10672 S-adenosylmethionine-dependent methyltransferase L1S45_11890 PF17785 PUA-like domain L1S45_11905 PF00586 AIR synthase related protein, N-terminal domain L1S45_11905 PF02769 AIR synthase related protein, C-terminal domain L1S45_11915 PF00753 Metallo-beta-lactamase superfamily L1S45_11920 PF00072 Response regulator receiver domain L1S45_11925 PF00512 His Kinase A (phospho-acceptor) domain L1S45_11925 PF01627 Hpt domain L1S45_11925 PF00072 Response regulator receiver domain L1S45_11925 PF00672 HAMP domain L1S45_11925 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) L1S45_11925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_11930 PF01386 Ribosomal L25p family L1S45_11940 PF00271 Helicase conserved C-terminal domain L1S45_11940 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold L1S45_11940 PF11898 Domain of unknown function (DUF3418) L1S45_11940 PF00270 DEAD/DEAH box helicase L1S45_11940 PF04408 Helicase associated domain (HA2) L1S45_11945 PF01743 Poly A polymerase head domain L1S45_11945 PF01368 DHH family L1S45_11945 PF02272 DHHA1 domain L1S45_11945 PF00571 CBS domain L1S45_11950 PF00196 Bacterial regulatory proteins, luxR family L1S45_11950 PF00072 Response regulator receiver domain L1S45_11955 PF07670 Nucleoside recognition L1S45_11965 PF00141 Peroxidase L1S45_11970 PF02575 YbaB/EbfC DNA-binding family L1S45_11975 PF12170 DNA polymerase III tau subunit V interacting with alpha L1S45_11975 PF12169 DNA polymerase III subunits gamma and tau domain III L1S45_11975 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding L1S45_11980 PF00156 Phosphoribosyl transferase domain L1S45_11985 PF04304 Protein of unknown function (DUF454) L1S45_11990 PF01207 Dihydrouridine synthase (Dus) L1S45_12000 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_12005 PF01612 3'-5' exonuclease L1S45_12005 PF00570 HRDC domain L1S45_12010 PF00501 AMP-binding enzyme L1S45_12010 PF13193 AMP-binding enzyme C-terminal domain L1S45_12015 PF12697 Alpha/beta hydrolase family L1S45_12025 PF00814 Glycoprotease family L1S45_12030 PF13307 Helicase C-terminal domain L1S45_12030 PF04851 Type III restriction enzyme, res subunit L1S45_12040 PF01634 ATP phosphoribosyltransferase L1S45_12040 PF08029 HisG, C-terminal domain L1S45_12045 PF00815 Histidinol dehydrogenase L1S45_12050 PF00155 Aminotransferase class I and II L1S45_12055 PF00475 Imidazoleglycerol-phosphate dehydratase L1S45_12055 PF08645 Polynucleotide kinase 3 phosphatase L1S45_12060 PF00117 Glutamine amidotransferase class-I L1S45_12065 PF00977 Histidine biosynthesis protein L1S45_12070 PF00072 Response regulator receiver domain L1S45_12075 PF00990 Diguanylate cyclase, GGDEF domain L1S45_12075 PF08448 PAS fold L1S45_12080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_12080 PF01627 Hpt domain L1S45_12080 PF00072 Response regulator receiver domain L1S45_12080 PF00512 His Kinase A (phospho-acceptor) domain L1S45_12085 PF00977 Histidine biosynthesis protein L1S45_12090 PF01502 Phosphoribosyl-AMP cyclohydrolase L1S45_12090 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase L1S45_12100 PF13280 WYL domain L1S45_12100 PF08279 HTH domain L1S45_12105 PF00501 AMP-binding enzyme L1S45_12105 PF13193 AMP-binding enzyme C-terminal domain L1S45_12110 PF03606 C4-dicarboxylate anaerobic carrier L1S45_12120 PF05433 Glycine zipper 2TM domain L1S45_12130 PF01799 [2Fe-2S] binding domain L1S45_12130 PF00111 2Fe-2S iron-sulfur cluster binding domain L1S45_12135 PF03450 CO dehydrogenase flavoprotein C-terminal domain L1S45_12135 PF00941 FAD binding domain in molybdopterin dehydrogenase L1S45_12140 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain L1S45_12140 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase L1S45_12145 PF00860 Permease family L1S45_12150 PF01979 Amidohydrolase family L1S45_12155 PF00860 Permease family L1S45_12160 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain L1S45_12160 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase L1S45_12160 PF01799 [2Fe-2S] binding domain L1S45_12165 PF00941 FAD binding domain in molybdopterin dehydrogenase L1S45_12170 PF01979 Amidohydrolase family L1S45_12175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster L1S45_12175 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_12180 PF12804 MobA-like NTP transferase domain L1S45_12190 PF13478 XdhC Rossmann domain L1S45_12190 PF02625 XdhC and CoxI family L1S45_12195 PF00892 EamA-like transporter family L1S45_12200 PF00696 Amino acid kinase family L1S45_12205 PF01979 Amidohydrolase family L1S45_12210 PF07687 Peptidase dimerisation domain L1S45_12210 PF01546 Peptidase family M20/M25/M40 L1S45_12215 PF00291 Pyridoxal-phosphate dependent enzyme L1S45_12220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain L1S45_12220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain L1S45_12225 PF02954 Bacterial regulatory protein, Fis family L1S45_12225 PF13188 PAS domain L1S45_12225 PF00158 Sigma-54 interaction domain L1S45_12235 PF07152 YaeQ protein L1S45_12245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain L1S45_12245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain L1S45_12245 PF00378 Enoyl-CoA hydratase/isomerase L1S45_12250 PF02803 Thiolase, C-terminal domain L1S45_12250 PF00108 Thiolase, N-terminal domain L1S45_12255 PF17863 AAA lid domain L1S45_12255 PF07726 ATPase family associated with various cellular activities (AAA) L1S45_12260 PF01882 Protein of unknown function DUF58 L1S45_12285 PF04542 Sigma-70 region 2 L1S45_12285 PF08281 Sigma-70, region 4 L1S45_12295 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) L1S45_12300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) L1S45_12305 PF00563 EAL domain L1S45_12305 PF08668 HDOD domain L1S45_12310 PF00108 Thiolase, N-terminal domain L1S45_12310 PF02803 Thiolase, C-terminal domain L1S45_12315 PF00376 MerR family regulatory protein L1S45_12315 PF09278 MerR, DNA binding L1S45_12320 PF00375 Sodium:dicarboxylate symporter family L1S45_12325 PF06865 Pyrimidine/purine nucleoside phosphorylase L1S45_12330 PF03313 Serine dehydratase alpha chain L1S45_12330 PF03315 Serine dehydratase beta chain L1S45_12335 PF03313 Serine dehydratase alpha chain L1S45_12335 PF03315 Serine dehydratase beta chain L1S45_12340 PF13406 Transglycosylase SLT domain L1S45_12345 PF05166 YcgL domain L1S45_12350 PF05209 Septum formation inhibitor MinC, N-terminal domain L1S45_12350 PF03775 Septum formation inhibitor MinC, C-terminal domain L1S45_12355 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain L1S45_12360 PF03776 Septum formation topological specificity factor MinE L1S45_12365 PF04269 Protein of unknown function, DUF440 L1S45_12370 PF00912 Transglycosylase L1S45_12375 PF04269 Protein of unknown function, DUF440 L1S45_12385 PF17783 CvfB-like winged helix domain L1S45_12385 PF13509 S1 domain L1S45_12410 PF02525 Flavodoxin-like fold L1S45_12415 PF00892 EamA-like transporter family L1S45_12420 PF02222 ATP-grasp domain L1S45_12420 PF01370 NAD dependent epimerase/dehydratase family L1S45_12425 PF13419 Haloacid dehalogenase-like hydrolase L1S45_12435 PF00677 Lumazine binding domain L1S45_12440 PF06786 Uncharacterised protein family (UPF0253) L1S45_12445 PF01554 MatE L1S45_12475 PF00136 DNA polymerase family B L1S45_12475 PF03104 DNA polymerase family B, exonuclease domain L1S45_12485 PF00990 Diguanylate cyclase, GGDEF domain L1S45_12500 PF03279 Bacterial lipid A biosynthesis acyltransferase L1S45_12505 PF03279 Bacterial lipid A biosynthesis acyltransferase L1S45_12515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_12515 PF03466 LysR substrate binding domain L1S45_12520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold L1S45_12520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain L1S45_12525 PF01261 Xylose isomerase-like TIM barrel L1S45_12530 PF03466 LysR substrate binding domain L1S45_12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_12540 PF01966 HD domain L1S45_12545 PF00232 Glycosyl hydrolase family 1 L1S45_12550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_12550 PF03466 LysR substrate binding domain L1S45_12555 PF00534 Glycosyl transferases group 1 L1S45_12555 PF00862 Sucrose synthase L1S45_12560 PF00534 Glycosyl transferases group 1 L1S45_12625 PF13439 Glycosyltransferase Family 4 L1S45_12625 PF00534 Glycosyl transferases group 1 L1S45_12630 PF03552 Cellulose synthase L1S45_12630 PF00535 Glycosyl transferase family 2 L1S45_12630 PF07238 PilZ domain L1S45_12635 PF02397 Bacterial sugar transferase L1S45_12640 PF00534 Glycosyl transferases group 1 L1S45_12645 PF00211 Adenylate and Guanylate cyclase catalytic domain L1S45_12645 PF00072 Response regulator receiver domain L1S45_12675 PF00072 Response regulator receiver domain L1S45_12675 PF01627 Hpt domain L1S45_12675 PF00512 His Kinase A (phospho-acceptor) domain L1S45_12675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_12675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) L1S45_12675 PF00672 HAMP domain L1S45_12680 PF12706 Beta-lactamase superfamily domain L1S45_12685 PF00248 Aldo/keto reductase family L1S45_12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_12690 PF03466 LysR substrate binding domain L1S45_12700 PF07676 WD40-like Beta Propeller Repeat L1S45_12700 PF00326 Prolyl oligopeptidase family L1S45_12700 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region L1S45_12705 PF12146 Serine aminopeptidase, S33 L1S45_12710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_12710 PF03466 LysR substrate binding domain L1S45_12735 PF02899 Phage integrase, N-terminal SAM-like domain L1S45_12735 PF00589 Phage integrase family L1S45_12745 PF02796 Helix-turn-helix domain of resolvase L1S45_12745 PF00239 Resolvase, N terminal domain L1S45_12755 PF02810 SEC-C motif L1S45_12755 PF07517 SecA DEAD-like domain L1S45_12755 PF01043 SecA preprotein cross-linking domain L1S45_12755 PF07516 SecA Wing and Scaffold domain L1S45_12775 PF01925 Sulfite exporter TauE/SafE L1S45_12780 PF13520 Amino acid permease L1S45_12790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase L1S45_12790 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase L1S45_12795 PF00378 Enoyl-CoA hydratase/isomerase L1S45_12800 PF00378 Enoyl-CoA hydratase/isomerase L1S45_12805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L1S45_12805 PF02770 Acyl-CoA dehydrogenase, middle domain L1S45_12805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L1S45_12810 PF00171 Aldehyde dehydrogenase family L1S45_12815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L1S45_12815 PF02770 Acyl-CoA dehydrogenase, middle domain L1S45_12815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L1S45_12820 PF01039 Carboxyl transferase domain L1S45_12825 PF00378 Enoyl-CoA hydratase/isomerase L1S45_12830 PF00364 Biotin-requiring enzyme L1S45_12830 PF00289 Biotin carboxylase, N-terminal domain L1S45_12830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L1S45_12830 PF02785 Biotin carboxylase C-terminal domain L1S45_12835 PF00682 HMGL-like L1S45_12840 PF00376 MerR family regulatory protein L1S45_12840 PF09278 MerR, DNA binding L1S45_12855 PF01184 GPR1/FUN34/yaaH family L1S45_12860 PF06167 Glucose-regulated metallo-peptidase M90 L1S45_12870 PF01235 Sodium:alanine symporter family L1S45_12875 PF00378 Enoyl-CoA hydratase/isomerase L1S45_12890 PF04341 Protein of unknown function, DUF485 L1S45_12895 PF00474 Sodium:solute symporter family L1S45_12900 PF00005 ABC transporter L1S45_12900 PF12848 ABC transporter L1S45_12910 PF00216 Bacterial DNA-binding protein L1S45_12915 PF02190 ATP-dependent protease La (LON) substrate-binding domain L1S45_12915 PF00004 ATPase family associated with various cellular activities (AAA) L1S45_12915 PF05362 Lon protease (S16) C-terminal proteolytic domain L1S45_12920 PF07724 AAA domain (Cdc48 subfamily) L1S45_12920 PF10431 C-terminal, D2-small domain, of ClpB protein L1S45_12920 PF06689 ClpX C4-type zinc finger L1S45_12925 PF00574 Clp protease L1S45_12930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L1S45_12930 PF05698 Bacterial trigger factor protein (TF) C-terminus L1S45_12930 PF05697 Bacterial trigger factor protein (TF) L1S45_12945 PF12704 MacB-like periplasmic core domain L1S45_12945 PF02687 FtsX-like permease family L1S45_12950 PF00005 ABC transporter L1S45_12955 PF02687 FtsX-like permease family L1S45_12955 PF12704 MacB-like periplasmic core domain L1S45_12965 PF02559 CarD-like/TRCF domain L1S45_12965 PF00270 DEAD/DEAH box helicase L1S45_12965 PF00271 Helicase conserved C-terminal domain L1S45_12965 PF03461 TRCF domain L1S45_12965 PF17757 UvrB interaction domain L1S45_12970 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain L1S45_12975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_12980 PF00892 EamA-like transporter family L1S45_12990 PF00300 Histidine phosphatase superfamily (branch 1) L1S45_12995 PF05193 Peptidase M16 inactive domain L1S45_12995 PF00675 Insulinase (Peptidase family M16) L1S45_13000 PF05724 Thiopurine S-methyltransferase (TPMT) L1S45_13015 PF02805 Metal binding domain of Ada L1S45_13015 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain L1S45_13015 PF12833 Helix-turn-helix domain L1S45_13015 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain L1S45_13045 PF00117 Glutamine amidotransferase class-I L1S45_13045 PF00958 GMP synthase C terminal domain L1S45_13045 PF02540 NAD synthase L1S45_13050 PF00571 CBS domain L1S45_13050 PF00478 IMP dehydrogenase / GMP reductase domain L1S45_13055 PF02705 K+ potassium transporter L1S45_13065 PF01618 MotA/TolQ/ExbB proton channel family L1S45_13070 PF02472 Biopolymer transport protein ExbD/TolR L1S45_13080 PF13742 OB-fold nucleic acid binding domain L1S45_13080 PF02601 Exonuclease VII, large subunit L1S45_13085 PF04055 Radical SAM superfamily L1S45_13090 PF00672 HAMP domain L1S45_13090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_13095 PF00793 DAHP synthetase I family L1S45_13100 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) L1S45_13105 PF00266 Aminotransferase class-V L1S45_13110 PF01012 Electron transfer flavoprotein domain L1S45_13110 PF00766 Electron transfer flavoprotein FAD-binding domain L1S45_13115 PF01012 Electron transfer flavoprotein domain L1S45_13125 PF01544 CorA-like Mg2+ transporter protein L1S45_13130 PF11143 Protein of unknown function (DUF2919) L1S45_13145 PF00593 TonB dependent receptor L1S45_13145 PF07715 TonB-dependent Receptor Plug Domain L1S45_13150 PF01032 FecCD transport family L1S45_13155 PF01032 FecCD transport family L1S45_13160 PF00005 ABC transporter L1S45_13165 PF01648 4'-phosphopantetheinyl transferase superfamily L1S45_13165 PF17837 4'-phosphopantetheinyl transferase N-terminal domain L1S45_13170 PF01497 Periplasmic binding protein L1S45_13175 PF13193 AMP-binding enzyme C-terminal domain L1S45_13175 PF00975 Thioesterase domain L1S45_13175 PF00550 Phosphopantetheine attachment site L1S45_13175 PF00668 Condensation domain L1S45_13175 PF00501 AMP-binding enzyme L1S45_13180 PF00550 Phosphopantetheine attachment site L1S45_13180 PF07993 Male sterility protein L1S45_13180 PF00668 Condensation domain L1S45_13180 PF00501 AMP-binding enzyme L1S45_13180 PF13193 AMP-binding enzyme C-terminal domain L1S45_13190 PF00975 Thioesterase domain L1S45_13190 PF00501 AMP-binding enzyme L1S45_13190 PF13193 AMP-binding enzyme C-terminal domain L1S45_13190 PF00668 Condensation domain L1S45_13190 PF00550 Phosphopantetheine attachment site L1S45_13195 PF00550 Phosphopantetheine attachment site L1S45_13195 PF00857 Isochorismatase family L1S45_13200 PF00501 AMP-binding enzyme L1S45_13200 PF13193 AMP-binding enzyme C-terminal domain L1S45_13205 PF00425 chorismate binding enzyme L1S45_13210 PF07273 Protein of unknown function (DUF1439) L1S45_13220 PF00483 Nucleotidyl transferase L1S45_13225 PF03707 Bacterial signalling protein N terminal repeat L1S45_13225 PF00563 EAL domain L1S45_13225 PF00990 Diguanylate cyclase, GGDEF domain L1S45_13240 PF00294 pfkB family carbohydrate kinase L1S45_13245 PF01124 MAPEG family L1S45_13250 PF00762 Ferrochelatase L1S45_13255 PF05191 Adenylate kinase, active site lid L1S45_13260 PF00183 Hsp90 protein L1S45_13260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_13265 PF13662 Toprim domain L1S45_13265 PF02132 RecR protein L1S45_13270 PF02634 FdhD/NarQ family L1S45_13275 PF00158 Sigma-54 interaction domain L1S45_13275 PF01590 GAF domain L1S45_13275 PF02954 Bacterial regulatory protein, Fis family L1S45_13290 PF13247 4Fe-4S dicluster domain L1S45_13290 PF12800 4Fe-4S binding domain L1S45_13315 PF00037 4Fe-4S binding domain L1S45_13315 PF12798 4Fe-4S binding domain L1S45_13320 PF00361 Proton-conducting membrane transporter L1S45_13325 PF00146 NADH dehydrogenase L1S45_13330 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit L1S45_13330 PF00374 Nickel-dependent hydrogenase L1S45_13330 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit L1S45_13335 PF12838 4Fe-4S dicluster domain L1S45_13340 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit L1S45_13345 PF07450 Formate hydrogenlyase maturation protein HycH L1S45_13350 PF01750 Hydrogenase maturation protease L1S45_13360 PF03841 L-seryl-tRNA selenium transferase L1S45_13360 PF12390 Selenocysteine synthase N terminal L1S45_13365 PF03144 Elongation factor Tu domain 2 L1S45_13365 PF09105 Elongation factor SelB, winged helix L1S45_13365 PF00009 Elongation factor Tu GTP binding domain L1S45_13365 PF09106 Elongation factor SelB, winged helix L1S45_13365 PF09107 Elongation factor SelB, winged helix L1S45_13370 PF07503 HypF finger L1S45_13370 PF17788 HypF Kae1-like domain L1S45_13370 PF00708 Acylphosphatase L1S45_13370 PF01300 Telomere recombination L1S45_13375 PF01455 HupF/HypC family L1S45_13380 PF01924 Hydrogenase formation hypA family L1S45_13385 PF00586 AIR synthase related protein, N-terminal domain L1S45_13385 PF02769 AIR synthase related protein, C-terminal domain L1S45_13390 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA L1S45_13400 PF02492 CobW/HypB/UreG, nucleotide-binding domain L1S45_13405 PF08402 TOBE domain L1S45_13405 PF00005 ABC transporter L1S45_13410 PF00005 ABC transporter L1S45_13410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_13415 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_13415 PF12911 N-terminal TM domain of oligopeptide transport permease C L1S45_13420 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_13425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_13430 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE L1S45_13435 PF01750 Hydrogenase maturation protease L1S45_13440 PF00374 Nickel-dependent hydrogenase L1S45_13445 PF03916 Polysulphide reductase, NrfD L1S45_13450 PF13247 4Fe-4S dicluster domain L1S45_13455 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal L1S45_13455 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit L1S45_13460 PF00842 Alanine racemase, C-terminal domain L1S45_13460 PF01168 Alanine racemase, N-terminal domain L1S45_13485 PF00916 Sulfate permease family L1S45_13485 PF01740 STAS domain L1S45_13500 PF13533 Biotin-lipoyl like L1S45_13525 PF03239 Iron permease FTR1 family L1S45_13530 PF01593 Flavin containing amine oxidoreductase L1S45_13545 PF07690 Major Facilitator Superfamily L1S45_13555 PF03600 Citrate transporter L1S45_13565 PF00005 ABC transporter L1S45_13570 PF12704 MacB-like periplasmic core domain L1S45_13570 PF02687 FtsX-like permease family L1S45_13615 PF03527 RHS protein L1S45_13615 PF05593 RHS Repeat L1S45_13625 PF05593 RHS Repeat L1S45_13625 PF03527 RHS protein L1S45_13650 PF03527 RHS protein L1S45_13650 PF05593 RHS Repeat L1S45_13685 PF04717 Type VI secretion system, phage-baseplate injector L1S45_13690 PF05638 Type VI secretion system effector, Hcp L1S45_13705 PF10722 Putative bacterial sensory transduction regulator L1S45_13715 PF00265 Thymidine kinase L1S45_13720 PF03553 Na+/H+ antiporter family L1S45_13725 PF00816 H-NS histone family L1S45_13730 PF01923 Cobalamin adenosyltransferase L1S45_13735 PF12843 Putative quorum-sensing-regulated virulence factor L1S45_13740 PF04055 Radical SAM superfamily L1S45_13745 PF06508 Queuosine biosynthesis protein QueC L1S45_13760 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family L1S45_13765 PF18073 Rubredoxin metal binding domain L1S45_13775 PF00216 Bacterial DNA-binding protein L1S45_13780 PF00575 S1 RNA binding domain L1S45_13785 PF02224 Cytidylate kinase L1S45_13790 PF00925 GTP cyclohydrolase II L1S45_13795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_13795 PF03466 LysR substrate binding domain L1S45_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_13800 PF03466 LysR substrate binding domain L1S45_13805 PF07690 Major Facilitator Superfamily L1S45_13820 PF00881 Nitroreductase family L1S45_13825 PF00990 Diguanylate cyclase, GGDEF domain L1S45_13825 PF03707 Bacterial signalling protein N terminal repeat L1S45_13825 PF00563 EAL domain L1S45_13825 PF13188 PAS domain L1S45_13835 PF03466 LysR substrate binding domain L1S45_13835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_13840 PF00072 Response regulator receiver domain L1S45_13850 PF01212 Beta-eliminating lyase L1S45_13865 PF00248 Aldo/keto reductase family L1S45_13870 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) L1S45_13880 PF03411 Penicillin-insensitive murein endopeptidase L1S45_13890 PF04536 TPM domain L1S45_13905 PF01618 MotA/TolQ/ExbB proton channel family L1S45_13910 PF13677 Membrane MotB of proton-channel complex MotA/MotB L1S45_13910 PF00691 OmpA family L1S45_13915 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 L1S45_13920 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit L1S45_13925 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit L1S45_13925 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit L1S45_13935 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region L1S45_13935 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit L1S45_13940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain L1S45_13940 PF00384 Molybdopterin oxidoreductase L1S45_13940 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region L1S45_13945 PF00146 NADH dehydrogenase L1S45_13950 PF12838 4Fe-4S dicluster domain L1S45_13955 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 L1S45_13960 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L L1S45_13965 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus L1S45_13965 PF00361 Proton-conducting membrane transporter L1S45_13970 PF00361 Proton-conducting membrane transporter L1S45_13975 PF00361 Proton-conducting membrane transporter L1S45_13985 PF00072 Response regulator receiver domain L1S45_13990 PF01966 HD domain L1S45_13995 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain L1S45_13995 PF02769 AIR synthase related protein, C-terminal domain L1S45_13995 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal L1S45_14000 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_14000 PF01464 Transglycosylase SLT domain L1S45_14005 PF07191 zinc-ribbons L1S45_14010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal L1S45_14010 PF01926 50S ribosome-binding GTPase L1S45_14015 PF13360 PQQ-like domain L1S45_14020 PF09976 Tetratricopeptide repeat-like domain L1S45_14025 PF13393 Histidyl-tRNA synthetase L1S45_14025 PF03129 Anticodon binding domain L1S45_14030 PF04551 GcpE protein L1S45_14035 PF13464 Domain of unknown function (DUF4115) L1S45_14045 PF04055 Radical SAM superfamily L1S45_14050 PF00334 Nucleoside diphosphate kinase L1S45_14055 PF00883 Cytosol aminopeptidase family, catalytic domain L1S45_14055 PF12404 Peptidase L1S45_14060 PF00883 Cytosol aminopeptidase family, catalytic domain L1S45_14060 PF12404 Peptidase L1S45_14065 PF00111 2Fe-2S iron-sulfur cluster binding domain L1S45_14070 PF00012 Hsp70 protein L1S45_14075 PF07743 HSCB C-terminal oligomerisation domain L1S45_14075 PF00226 DnaJ domain L1S45_14080 PF01521 Iron-sulphur cluster biosynthesis L1S45_14085 PF01592 NifU-like N terminal domain L1S45_14090 PF00266 Aminotransferase class-V L1S45_14095 PF02082 Transcriptional regulator L1S45_14100 PF00588 SpoU rRNA Methylase family L1S45_14110 PF02036 SCP-2 sterol transfer family L1S45_14115 PF01136 Peptidase family U32 L1S45_14120 PF01136 Peptidase family U32 L1S45_14125 PF07719 Tetratricopeptide repeat L1S45_14125 PF13181 Tetratricopeptide repeat L1S45_14135 PF07549 SecD/SecF GG Motif L1S45_14135 PF02355 Protein export membrane protein L1S45_14140 PF02355 Protein export membrane protein L1S45_14140 PF07549 SecD/SecF GG Motif L1S45_14140 PF13721 SecD export protein N-terminal TM region L1S45_14145 PF02699 Preprotein translocase subunit L1S45_14150 PF01702 Queuine tRNA-ribosyltransferase L1S45_14155 PF02547 Queuosine biosynthesis protein L1S45_14160 PF00571 CBS domain L1S45_14165 PF10417 C-terminal domain of 1-Cys peroxiredoxin L1S45_14165 PF00578 AhpC/TSA family L1S45_14170 PF13192 Thioredoxin domain L1S45_14170 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_14175 PF07690 Major Facilitator Superfamily L1S45_14180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_14180 PF00512 His Kinase A (phospho-acceptor) domain L1S45_14180 PF00989 PAS fold L1S45_14190 PF08241 Methyltransferase domain L1S45_14195 PF00884 Sulfatase L1S45_14200 PF04055 Radical SAM superfamily L1S45_14200 PF13186 Iron-sulfur cluster-binding domain L1S45_14210 PF13356 Arm DNA-binding domain L1S45_14210 PF00589 Phage integrase family L1S45_14250 PF05488 PAAR motif L1S45_14250 PF05593 RHS Repeat L1S45_14260 PF04717 Type VI secretion system, phage-baseplate injector L1S45_14265 PF05638 Type VI secretion system effector, Hcp L1S45_14270 PF03472 Autoinducer binding domain L1S45_14270 PF00196 Bacterial regulatory proteins, luxR family L1S45_14335 PF04002 RadC-like JAB domain L1S45_14380 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A L1S45_14415 PF01027 Inhibitor of apoptosis-promoting Bax1 L1S45_14420 PF12805 FUSC-like inner membrane protein yccS L1S45_14425 PF04358 DsrC like protein L1S45_14430 PF05036 Sporulation related domain L1S45_14435 PF02875 Mur ligase family, glutamate ligase domain L1S45_14435 PF08245 Mur ligase middle domain L1S45_14440 PF01039 Carboxyl transferase domain L1S45_14440 PF17848 Acetyl-coA carboxylase zinc finger domain L1S45_14445 PF01416 tRNA pseudouridine synthase L1S45_14455 PF01118 Semialdehyde dehydrogenase, NAD binding domain L1S45_14455 PF02774 Semialdehyde dehydrogenase, dimerisation domain L1S45_14460 PF11890 Domain of unknown function (DUF3410) L1S45_14460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L1S45_14460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain L1S45_14465 PF01569 PAP2 superfamily L1S45_14470 PF03180 NLPA lipoprotein L1S45_14500 PF01483 Proprotein convertase P-domain L1S45_14500 PF00082 Subtilase family L1S45_14510 PF14310 Fibronectin type III-like domain L1S45_14510 PF00933 Glycosyl hydrolase family 3 N terminal domain L1S45_14510 PF01915 Glycosyl hydrolase family 3 C-terminal domain L1S45_14515 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term L1S45_14515 PF12833 Helix-turn-helix domain L1S45_14520 PF02896 PEP-utilising enzyme, TIM barrel domain L1S45_14520 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain L1S45_14520 PF00391 PEP-utilising enzyme, mobile domain L1S45_14525 PF03618 Kinase/pyrophosphorylase L1S45_14535 PF00324 Amino acid permease L1S45_14550 PF00092 von Willebrand factor type A domain L1S45_14575 PF03412 Peptidase C39 family L1S45_14575 PF00005 ABC transporter L1S45_14575 PF00664 ABC transporter transmembrane region L1S45_14580 PF04055 Radical SAM superfamily L1S45_14580 PF16199 Radical_SAM C-terminal domain L1S45_14585 PF04898 Glutamate synthase central domain L1S45_14585 PF01645 Conserved region in glutamate synthase L1S45_14585 PF01493 GXGXG motif L1S45_14585 PF00310 Glutamine amidotransferases class-II L1S45_14590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster L1S45_14590 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_14605 PF00376 MerR family regulatory protein L1S45_14605 PF09278 MerR, DNA binding L1S45_14620 PF14521 Lysine-specific metallo-endopeptidase L1S45_14630 PF00271 Helicase conserved C-terminal domain L1S45_14630 PF00270 DEAD/DEAH box helicase L1S45_14635 PF13302 Acetyltransferase (GNAT) domain L1S45_14665 PF08378 Nuclease-related domain L1S45_14675 PF07759 Protein of unknown function (DUF1615) L1S45_14680 PF07690 Major Facilitator Superfamily L1S45_14685 PF13533 Biotin-lipoyl like L1S45_14695 PF08502 LeuA allosteric (dimerisation) domain L1S45_14695 PF00682 HMGL-like L1S45_14700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L1S45_14700 PF02142 MGS-like domain L1S45_14700 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain L1S45_14705 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain L1S45_14705 PF00117 Glutamine amidotransferase class-I L1S45_14710 PF05173 Dihydrodipicolinate reductase, C-terminus L1S45_14710 PF01113 Dihydrodipicolinate reductase, N-terminus L1S45_14720 PF01812 5-formyltetrahydrofolate cyclo-ligase family L1S45_14725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) L1S45_14730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain L1S45_14730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L1S45_14730 PF01842 ACT domain L1S45_14735 PF01219 Prokaryotic diacylglycerol kinase L1S45_14740 PF00793 DAHP synthetase I family L1S45_14745 PF00005 ABC transporter L1S45_14750 PF01032 FecCD transport family L1S45_14755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_14755 PF00512 His Kinase A (phospho-acceptor) domain L1S45_14755 PF01627 Hpt domain L1S45_14755 PF00989 PAS fold L1S45_14755 PF00072 Response regulator receiver domain L1S45_14755 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_14765 PF00437 Type II/IV secretion system protein L1S45_14770 PF00483 Nucleotidyl transferase L1S45_14785 PF07670 Nucleoside recognition L1S45_14785 PF07664 Ferrous iron transport protein B C terminus L1S45_14785 PF02421 Ferrous iron transport protein B L1S45_14795 PF01253 Translation initiation factor SUI1 L1S45_14800 PF01169 Uncharacterized protein family UPF0016 L1S45_14830 PF13185 GAF domain L1S45_14830 PF00990 Diguanylate cyclase, GGDEF domain L1S45_14845 PF09190 DALR domain L1S45_14845 PF01406 tRNA synthetases class I (C) catalytic domain L1S45_14850 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD L1S45_14860 PF00149 Calcineurin-like phosphoesterase L1S45_14865 PF03916 Polysulphide reductase, NrfD L1S45_14870 PF00037 4Fe-4S binding domain L1S45_14870 PF13247 4Fe-4S dicluster domain L1S45_14890 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) L1S45_14895 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB L1S45_14910 PF02899 Phage integrase, N-terminal SAM-like domain L1S45_14910 PF00589 Phage integrase family L1S45_14925 PF01381 Helix-turn-helix L1S45_14940 PF06892 Phage regulatory protein CII (CP76) L1S45_15050 PF01258 Prokaryotic dksA/traR C4-type zinc finger L1S45_15145 PF01066 CDP-alcohol phosphatidyltransferase L1S45_15150 PF08459 UvrC Helix-hairpin-helix N-terminal L1S45_15150 PF01541 GIY-YIG catalytic domain L1S45_15150 PF02151 UvrB/uvrC motif L1S45_15155 PF00196 Bacterial regulatory proteins, luxR family L1S45_15155 PF00072 Response regulator receiver domain L1S45_15160 PF02348 Cytidylyltransferase L1S45_15165 PF03966 Trm112p-like protein L1S45_15170 PF02606 Tetraacyldisaccharide-1-P 4'-kinase L1S45_15175 PF00664 ABC transporter transmembrane region L1S45_15175 PF00005 ABC transporter L1S45_15180 PF00753 Metallo-beta-lactamase superfamily L1S45_15180 PF03772 Competence protein L1S45_15195 PF05872 Bacterial protein of unknown function (DUF853) L1S45_15200 PF00155 Aminotransferase class I and II L1S45_15210 PF13609 Gram-negative porin L1S45_15215 PF13307 Helicase C-terminal domain L1S45_15215 PF06733 DEAD_2 L1S45_15225 PF00850 Histone deacetylase domain L1S45_15230 PF07690 Major Facilitator Superfamily L1S45_15235 PF01926 50S ribosome-binding GTPase L1S45_15240 PF00245 Alkaline phosphatase L1S45_15245 PF00245 Alkaline phosphatase L1S45_15260 PF14760 Rnk N-terminus L1S45_15260 PF01272 Transcription elongation factor, GreA/GreB, C-term L1S45_15265 PF00072 Response regulator receiver domain L1S45_15265 PF00196 Bacterial regulatory proteins, luxR family L1S45_15270 PF07730 Histidine kinase L1S45_15270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_15270 PF05231 MASE1 L1S45_15275 PF07690 Major Facilitator Superfamily L1S45_15280 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_15285 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_15290 PF00005 ABC transporter L1S45_15305 PF04116 Fatty acid hydroxylase superfamily L1S45_15310 PF13520 Amino acid permease L1S45_15325 PF00571 CBS domain L1S45_15325 PF03471 Transporter associated domain L1S45_15325 PF01595 Cyclin M transmembrane N-terminal domain L1S45_15330 PF01895 PhoU domain L1S45_15335 PF00005 ABC transporter L1S45_15340 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_15345 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_15350 PF14437 MafB19-like deaminase L1S45_15365 PF01274 Malate synthase L1S45_15370 PF00463 Isocitrate lyase family L1S45_15375 PF00308 Bacterial dnaA protein L1S45_15390 PF00586 AIR synthase related protein, N-terminal domain L1S45_15390 PF02769 AIR synthase related protein, C-terminal domain L1S45_15395 PF00551 Formyl transferase L1S45_15400 PF01784 NIF3 (NGG1p interacting factor 3) L1S45_15405 PF00072 Response regulator receiver domain L1S45_15405 PF00158 Sigma-54 interaction domain L1S45_15405 PF02954 Bacterial regulatory protein, Fis family L1S45_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_15410 PF00512 His Kinase A (phospho-acceptor) domain L1S45_15410 PF13188 PAS domain L1S45_15415 PF06490 Flagellar regulatory protein FleQ L1S45_15415 PF02954 Bacterial regulatory protein, Fis family L1S45_15415 PF00158 Sigma-54 interaction domain L1S45_15425 PF01842 ACT domain L1S45_15430 PF13089 Polyphosphate kinase N-terminal domain L1S45_15430 PF17941 Polyphosphate kinase C-terminal domain 1 L1S45_15430 PF02503 Polyphosphate kinase middle domain L1S45_15430 PF13090 Polyphosphate kinase C-terminal domain 2 L1S45_15435 PF02541 Ppx/GppA phosphatase family L1S45_15440 PF03448 MgtE intracellular N domain L1S45_15440 PF01769 Divalent cation transporter L1S45_15440 PF00571 CBS domain L1S45_15445 PF00669 Bacterial flagellin N-terminal helical region L1S45_15450 PF00460 Flagella basal body rod protein L1S45_15450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_15455 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase L1S45_15455 PF10135 Rod binding protein L1S45_15460 PF02119 Flagellar P-ring protein L1S45_15465 PF02107 Flagellar L-ring protein L1S45_15470 PF00460 Flagella basal body rod protein L1S45_15470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_15475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_15475 PF00460 Flagella basal body rod protein L1S45_15480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_15480 PF00460 Flagella basal body rod protein L1S45_15480 PF07559 Flagellar basal body protein FlaE L1S45_15490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal L1S45_15490 PF00460 Flagella basal body rod protein L1S45_15495 PF00460 Flagella basal body rod protein L1S45_15500 PF01739 CheR methyltransferase, SAM binding domain L1S45_15500 PF03705 CheR methyltransferase, all-alpha domain L1S45_15505 PF01584 CheW-like domain L1S45_15505 PF00072 Response regulator receiver domain L1S45_15510 PF13144 Chaperone for flagella basal body P-ring formation L1S45_15525 PF12850 Calcineurin-like phosphoesterase superfamily domain L1S45_15530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_15540 PF00849 RNA pseudouridylate synthase L1S45_15540 PF01479 S4 domain L1S45_15545 PF11871 Domain of unknown function (DUF3391) L1S45_15545 PF01966 HD domain L1S45_15555 PF00923 Transaldolase/Fructose-6-phosphate aldolase L1S45_15560 PF04055 Radical SAM superfamily L1S45_15565 PF01228 Glycine radical L1S45_15565 PF02901 Pyruvate formate lyase-like L1S45_15570 PF08220 DeoR-like helix-turn-helix domain L1S45_15570 PF00455 DeoR C terminal sensor domain L1S45_15575 PF00892 EamA-like transporter family L1S45_15580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_15605 PF00313 'Cold-shock' DNA-binding domain L1S45_15610 PF00364 Biotin-requiring enzyme L1S45_15610 PF02817 e3 binding domain L1S45_15610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L1S45_15615 PF02779 Transketolase, pyrimidine binding domain L1S45_15615 PF02780 Transketolase, C-terminal domain L1S45_15620 PF00676 Dehydrogenase E1 component L1S45_15625 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family L1S45_15635 PF05472 DNA replication terminus site-binding protein (Ter protein) L1S45_15640 PF00176 SNF2 family N-terminal domain L1S45_15640 PF04434 SWIM zinc finger L1S45_15640 PF00271 Helicase conserved C-terminal domain L1S45_15645 PF04337 Protein of unknown function, DUF480 L1S45_15655 PF02397 Bacterial sugar transferase L1S45_15665 PF13439 Glycosyltransferase Family 4 L1S45_15665 PF00534 Glycosyl transferases group 1 L1S45_15670 PF00535 Glycosyl transferase family 2 L1S45_15680 PF02719 Polysaccharide biosynthesis protein L1S45_15685 PF00953 Glycosyl transferase family 4 L1S45_15690 PF01370 NAD dependent epimerase/dehydratase family L1S45_15705 PF03600 Citrate transporter L1S45_15705 PF02080 TrkA-C domain L1S45_15710 PF00009 Elongation factor Tu GTP binding domain L1S45_15715 PF01507 Phosphoadenosine phosphosulfate reductase family L1S45_15725 PF02350 UDP-N-acetylglucosamine 2-epimerase L1S45_15730 PF00535 Glycosyl transferase family 2 L1S45_15740 PF00005 ABC transporter L1S45_15750 PF00263 Bacterial type II and III secretion system protein L1S45_15750 PF03958 Bacterial type II/III secretion system short domain L1S45_15790 PF07963 Prokaryotic N-terminal methylation motif L1S45_15790 PF08334 Type II secretion system (T2SS), protein G L1S45_15795 PF00482 Type II secretion system (T2SS), protein F L1S45_15800 PF00437 Type II/IV secretion system protein L1S45_15810 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase L1S45_15815 PF00483 Nucleotidyl transferase L1S45_15820 PF04321 RmlD substrate binding domain L1S45_15825 PF16363 GDP-mannose 4,6 dehydratase L1S45_15830 PF02321 Outer membrane efflux protein L1S45_15835 PF00873 AcrB/AcrD/AcrF family L1S45_15840 PF00529 HlyD membrane-fusion protein of T1SS L1S45_15840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_15845 PF08361 MAATS-type transcriptional repressor, C-terminal region L1S45_15845 PF00440 Bacterial regulatory proteins, tetR family L1S45_15865 PF00849 RNA pseudouridylate synthase L1S45_15865 PF01479 S4 domain L1S45_15870 PF04079 Segregation and condensation complex subunit ScpB L1S45_15875 PF02616 Segregation and condensation protein ScpA L1S45_15880 PF01300 Telomere recombination L1S45_15885 PF02811 PHP domain L1S45_15890 PF04715 Anthranilate synthase component I, N terminal region L1S45_15890 PF00425 chorismate binding enzyme L1S45_15895 PF00117 Glutamine amidotransferase class-I L1S45_15895 PF02885 Glycosyl transferase family, helical bundle domain L1S45_15895 PF00591 Glycosyl transferase family, a/b domain L1S45_15900 PF02885 Glycosyl transferase family, helical bundle domain L1S45_15900 PF00591 Glycosyl transferase family, a/b domain L1S45_15905 PF00218 Indole-3-glycerol phosphate synthase L1S45_15905 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase L1S45_15910 PF00291 Pyridoxal-phosphate dependent enzyme L1S45_15915 PF00290 Tryptophan synthase alpha chain L1S45_15955 PF07670 Nucleoside recognition L1S45_15955 PF07662 Na+ dependent nucleoside transporter C-terminus L1S45_15955 PF01773 Na+ dependent nucleoside transporter N-terminus L1S45_15965 PF04069 Substrate binding domain of ABC-type glycine betaine transport system L1S45_15970 PF00005 ABC transporter L1S45_15975 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_15980 PF02668 Taurine catabolism dioxygenase TauD, TfdA family L1S45_15990 PF07690 Major Facilitator Superfamily L1S45_15995 PF01040 UbiA prenyltransferase family L1S45_16000 PF03626 Prokaryotic Cytochrome C oxidase subunit IV L1S45_16005 PF00510 Cytochrome c oxidase subunit III L1S45_16010 PF00115 Cytochrome C and Quinol oxidase polypeptide I L1S45_16015 PF06481 COX Aromatic Rich Motif L1S45_16015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain L1S45_16025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III L1S45_16025 PF00034 Cytochrome c L1S45_16035 PF01156 Inosine-uridine preferring nucleoside hydrolase L1S45_16050 PF00127 Copper binding proteins, plastocyanin/azurin family L1S45_16055 PF02424 ApbE family L1S45_16060 PF07690 Major Facilitator Superfamily L1S45_16065 PF00011 Hsp20/alpha crystallin family L1S45_16080 PF03372 Endonuclease/Exonuclease/phosphatase family L1S45_16085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_16090 PF00873 AcrB/AcrD/AcrF family L1S45_16105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_16105 PF00529 HlyD membrane-fusion protein of T1SS L1S45_16110 PF00873 AcrB/AcrD/AcrF family L1S45_16125 PF03099 Biotin/lipoate A/B protein ligase family L1S45_16125 PF10437 Bacterial lipoate protein ligase C-terminus L1S45_16130 PF00563 EAL domain L1S45_16130 PF00990 Diguanylate cyclase, GGDEF domain L1S45_16130 PF03707 Bacterial signalling protein N terminal repeat L1S45_16135 PF00873 AcrB/AcrD/AcrF family L1S45_16150 PF04143 Sulphur transport L1S45_16155 PF01022 Bacterial regulatory protein, arsR family L1S45_16170 PF02308 MgtC family L1S45_16175 PF00356 Bacterial regulatory proteins, lacI family L1S45_16175 PF13407 Periplasmic binding protein domain L1S45_16190 PF00367 phosphotransferase system, EIIB L1S45_16190 PF02378 Phosphotransferase system, EIIC L1S45_16195 PF00294 pfkB family carbohydrate kinase L1S45_16200 PF02264 LamB porin L1S45_16200 PF11471 Maltoporin periplasmic N-terminal extension L1S45_16205 PF01556 DnaJ C terminal domain L1S45_16205 PF00684 DnaJ central domain L1S45_16205 PF00226 DnaJ domain L1S45_16210 PF00012 Hsp70 protein L1S45_16215 PF01025 GrpE L1S45_16220 PF01513 ATP-NAD kinase L1S45_16225 PF02463 RecF/RecN/SMC N terminal domain L1S45_16230 PF01368 DHH family L1S45_16230 PF02833 DHHA2 domain L1S45_16240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_16245 PF00005 ABC transporter L1S45_16245 PF02687 FtsX-like permease family L1S45_16245 PF12704 MacB-like periplasmic core domain L1S45_16250 PF02321 Outer membrane efflux protein L1S45_16255 PF08021 Siderophore-interacting FAD-binding domain L1S45_16255 PF04954 Siderophore-interacting protein L1S45_16260 PF00793 DAHP synthetase I family L1S45_16270 PF00816 H-NS histone family L1S45_16285 PF01266 FAD dependent oxidoreductase L1S45_16290 PF07883 Cupin domain L1S45_16290 PF01381 Helix-turn-helix L1S45_16295 PF00171 Aldehyde dehydrogenase family L1S45_16300 PF00202 Aminotransferase class-III L1S45_16305 PF00324 Amino acid permease L1S45_16315 PF13520 Amino acid permease L1S45_16325 PF02690 Na+/Pi-cotransporter L1S45_16330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L1S45_16330 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase L1S45_16335 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase L1S45_16340 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) L1S45_16340 PF01627 Hpt domain L1S45_16340 PF00512 His Kinase A (phospho-acceptor) domain L1S45_16340 PF00072 Response regulator receiver domain L1S45_16340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_16340 PF00672 HAMP domain L1S45_16345 PF00563 EAL domain L1S45_16345 PF01590 GAF domain L1S45_16345 PF00990 Diguanylate cyclase, GGDEF domain L1S45_16345 PF00360 Phytochrome region L1S45_16350 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_16350 PF00072 Response regulator receiver domain L1S45_16350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_16350 PF00512 His Kinase A (phospho-acceptor) domain L1S45_16350 PF01627 Hpt domain L1S45_16350 PF00989 PAS fold L1S45_16375 PF12848 ABC transporter L1S45_16375 PF00005 ABC transporter L1S45_16390 PF13474 SnoaL-like domain L1S45_16395 PF00291 Pyridoxal-phosphate dependent enzyme L1S45_16395 PF14821 Threonine synthase N terminus L1S45_16400 PF08544 GHMP kinases C terminal L1S45_16400 PF00288 GHMP kinases N terminal domain L1S45_16405 PF03447 Homoserine dehydrogenase, NAD binding domain L1S45_16405 PF00742 Homoserine dehydrogenase L1S45_16405 PF13840 ACT domain L1S45_16405 PF01842 ACT domain L1S45_16405 PF00696 Amino acid kinase family L1S45_16410 PF00588 SpoU rRNA Methylase family L1S45_16415 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) L1S45_16430 PF03737 Aldolase/RraA L1S45_16440 PF00486 Transcriptional regulatory protein, C terminal L1S45_16440 PF00072 Response regulator receiver domain L1S45_16455 PF00664 ABC transporter transmembrane region L1S45_16455 PF00005 ABC transporter L1S45_16460 PF00664 ABC transporter transmembrane region L1S45_16460 PF00005 ABC transporter L1S45_16480 PF01980 tRNA-methyltransferase O L1S45_16480 PF18389 TrmO C-terminal domain L1S45_16485 PF00672 HAMP domain L1S45_16485 PF01966 HD domain L1S45_16490 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal L1S45_16490 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III L1S45_16500 PF10431 C-terminal, D2-small domain, of ClpB protein L1S45_16500 PF02861 Clp amino terminal domain, pathogenicity island component L1S45_16500 PF17871 AAA lid domain L1S45_16500 PF07724 AAA domain (Cdc48 subfamily) L1S45_16500 PF00004 ATPase family associated with various cellular activities (AAA) L1S45_16505 PF00291 Pyridoxal-phosphate dependent enzyme L1S45_16510 PF00381 PTS HPr component phosphorylation site L1S45_16515 PF00391 PEP-utilising enzyme, mobile domain L1S45_16515 PF05524 PEP-utilising enzyme, N-terminal L1S45_16515 PF02896 PEP-utilising enzyme, TIM barrel domain L1S45_16520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 L1S45_16525 PF00990 Diguanylate cyclase, GGDEF domain L1S45_16525 PF00072 Response regulator receiver domain L1S45_16530 PF01292 Prokaryotic cytochrome b561 L1S45_16545 PF00149 Calcineurin-like phosphoesterase L1S45_16545 PF12320 Type 5 capsule protein repressor C-terminal domain L1S45_16555 PF04381 Putative exonuclease, RdgC L1S45_16565 PF00999 Sodium/hydrogen exchanger family L1S45_16565 PF02254 TrkA-N domain L1S45_16570 PF04389 Peptidase family M28 L1S45_16570 PF04151 Bacterial pre-peptidase C-terminal domain L1S45_16580 PF00224 Pyruvate kinase, barrel domain L1S45_16580 PF02887 Pyruvate kinase, alpha/beta domain L1S45_16585 PF00924 Mechanosensitive ion channel L1S45_16585 PF12795 Mechanosensitive ion channel porin domain L1S45_16585 PF12794 Mechanosensitive ion channel inner membrane domain 1 L1S45_16595 PF10282 Lactonase, 7-bladed beta-propeller L1S45_16605 PF00672 HAMP domain L1S45_16605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_16610 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_16615 PF00860 Permease family L1S45_16630 PF03949 Malic enzyme, NAD binding domain L1S45_16630 PF00390 Malic enzyme, N-terminal domain L1S45_16640 PF13247 4Fe-4S dicluster domain L1S45_16645 PF00384 Molybdopterin oxidoreductase L1S45_16645 PF01568 Molydopterin dinucleotide binding domain L1S45_16645 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region L1S45_16645 PF12838 4Fe-4S dicluster domain L1S45_16645 PF12838 4Fe-4S dicluster domain L1S45_16645 PF00384 Molybdopterin oxidoreductase L1S45_16645 PF01568 Molydopterin dinucleotide binding domain L1S45_16645 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region L1S45_16645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain L1S45_16645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain L1S45_16680 PF02634 FdhD/NarQ family L1S45_16685 PF12728 Helix-turn-helix domain L1S45_16685 PF12727 PBP superfamily domain L1S45_16690 PF00512 His Kinase A (phospho-acceptor) domain L1S45_16690 PF00989 PAS fold L1S45_16690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_16695 PF02954 Bacterial regulatory protein, Fis family L1S45_16695 PF00072 Response regulator receiver domain L1S45_16695 PF00158 Sigma-54 interaction domain L1S45_16700 PF12849 PBP superfamily domain L1S45_16705 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_16710 PF00005 ABC transporter L1S45_16715 PF12804 MobA-like NTP transferase domain L1S45_16720 PF03453 MoeA N-terminal region (domain I and II) L1S45_16720 PF03454 MoeA C-terminal region (domain IV) L1S45_16720 PF00994 Probable molybdopterin binding domain L1S45_16725 PF04632 Fusaric acid resistance protein family L1S45_16740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_16740 PF08447 PAS fold L1S45_16740 PF13426 PAS domain L1S45_16760 PF05114 Protein of unknown function (DUF692) L1S45_16780 PF10725 Protein of unknown function (DUF2517) L1S45_16800 PF00072 Response regulator receiver domain L1S45_16800 PF00512 His Kinase A (phospho-acceptor) domain L1S45_16800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_16800 PF09308 LuxQ, periplasmic L1S45_16805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_16810 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_16815 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_16815 PF12911 N-terminal TM domain of oligopeptide transport permease C L1S45_16820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_16820 PF00005 ABC transporter L1S45_16825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L1S45_16825 PF00005 ABC transporter L1S45_16835 PF01869 BadF/BadG/BcrA/BcrD ATPase family L1S45_16840 PF00728 Glycosyl hydrolase family 20, catalytic domain L1S45_16840 PF02838 Glycosyl hydrolase family 20, domain 2 L1S45_16845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_16845 PF08447 PAS fold L1S45_16860 PF08272 Topoisomerase I zinc-ribbon-like L1S45_16860 PF01131 DNA topoisomerase L1S45_16860 PF01751 Toprim domain L1S45_16860 PF01396 Topoisomerase DNA binding C4 zinc finger L1S45_16865 PF04996 Succinylarginine dihydrolase L1S45_16870 PF01343 Peptidase family S49 L1S45_16870 PF08496 Peptidase family S49 N-terminal L1S45_16875 PF00106 short chain dehydrogenase L1S45_16880 PF03466 LysR substrate binding domain L1S45_16880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_16885 PF07690 Major Facilitator Superfamily L1S45_16890 PF00155 Aminotransferase class I and II L1S45_16900 PF03466 LysR substrate binding domain L1S45_16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_16905 PF00709 Adenylosuccinate synthetase L1S45_16910 PF01161 Phosphatidylethanolamine-binding protein L1S45_16920 PF01204 Trehalase L1S45_16925 PF00579 tRNA synthetases class I (W and Y) L1S45_16930 PF08525 Opacity-associated protein A N-terminal motif L1S45_16930 PF01551 Peptidase family M23 L1S45_16930 PF01476 LysM domain L1S45_16935 PF03702 Anhydro-N-acetylmuramic acid kinase L1S45_16945 PF01042 Endoribonuclease L-PSP L1S45_16955 PF02779 Transketolase, pyrimidine binding domain L1S45_16955 PF02780 Transketolase, C-terminal domain L1S45_16955 PF00456 Transketolase, thiamine diphosphate binding domain L1S45_16960 PF02772 S-adenosylmethionine synthetase, central domain L1S45_16960 PF02773 S-adenosylmethionine synthetase, C-terminal domain L1S45_16960 PF00438 S-adenosylmethionine synthetase, N-terminal domain L1S45_16965 PF10263 SprT-like family L1S45_16970 PF04231 Endonuclease I L1S45_16975 PF04452 RNA methyltransferase L1S45_16980 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain L1S45_16980 PF02951 Prokaryotic glutathione synthetase, N-terminal domain L1S45_16985 PF01699 Sodium/calcium exchanger protein L1S45_16990 PF08534 Redoxin L1S45_17000 PF00293 NUDIX domain L1S45_17010 PF00005 ABC transporter L1S45_17015 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_17020 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_17025 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_17040 PF00005 ABC transporter L1S45_17045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L1S45_17045 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase L1S45_17060 PF03932 CutC family L1S45_17065 PF00480 ROK family L1S45_17075 PF01435 Peptidase family M48 L1S45_17080 PF12849 PBP superfamily domain L1S45_17085 PF11808 Phosphate regulon sensor protein PhoR L1S45_17085 PF00512 His Kinase A (phospho-acceptor) domain L1S45_17085 PF00989 PAS fold L1S45_17085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_17090 PF00072 Response regulator receiver domain L1S45_17090 PF00486 Transcriptional regulatory protein, C terminal L1S45_17095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L1S45_17100 PF02515 CoA-transferase family III L1S45_17105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L1S45_17105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L1S45_17105 PF02770 Acyl-CoA dehydrogenase, middle domain L1S45_17110 PF01590 GAF domain L1S45_17110 PF02954 Bacterial regulatory protein, Fis family L1S45_17110 PF00158 Sigma-54 interaction domain L1S45_17115 PF00171 Aldehyde dehydrogenase family L1S45_17125 PF00892 EamA-like transporter family L1S45_17130 PF12431 Transcriptional regulator L1S45_17130 PF00072 Response regulator receiver domain L1S45_17135 PF17203 Single cache domain 3 L1S45_17135 PF00989 PAS fold L1S45_17135 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain L1S45_17135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_17140 PF03949 Malic enzyme, NAD binding domain L1S45_17140 PF00390 Malic enzyme, N-terminal domain L1S45_17145 PF03390 2-hydroxycarboxylate transporter family L1S45_17155 PF01047 MarR family L1S45_17160 PF00529 HlyD membrane-fusion protein of T1SS L1S45_17160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_17185 PF01679 Proteolipid membrane potential modulator L1S45_17195 PF03477 ATP cone domain L1S45_17195 PF13597 Anaerobic ribonucleoside-triphosphate reductase L1S45_17205 PF00533 BRCA1 C Terminus (BRCT) domain L1S45_17205 PF01653 NAD-dependent DNA ligase adenylation domain L1S45_17205 PF12826 Helix-hairpin-helix motif L1S45_17205 PF03120 NAD-dependent DNA ligase OB-fold domain L1S45_17205 PF03119 NAD-dependent DNA ligase C4 zinc finger domain L1S45_17210 PF04354 ZipA, C-terminal FtsZ-binding domain L1S45_17215 PF06470 SMC proteins Flexible Hinge Domain L1S45_17215 PF02463 RecF/RecN/SMC N terminal domain L1S45_17225 PF03458 UPF0126 domain L1S45_17235 PF05951 Bacterial protein of unknown function (DUF882) L1S45_17240 PF01471 Putative peptidoglycan binding domain L1S45_17240 PF03734 L,D-transpeptidase catalytic domain L1S45_17255 PF00535 Glycosyl transferase family 2 L1S45_17270 PF00128 Alpha amylase, catalytic domain L1S45_17280 PF00196 Bacterial regulatory proteins, luxR family L1S45_17280 PF00072 Response regulator receiver domain L1S45_17305 PF00999 Sodium/hydrogen exchanger family L1S45_17305 PF02080 TrkA-C domain L1S45_17305 PF02254 TrkA-N domain L1S45_17310 PF00990 Diguanylate cyclase, GGDEF domain L1S45_17315 PF11734 TilS substrate C-terminal domain L1S45_17315 PF09179 TilS substrate binding domain L1S45_17315 PF01171 PP-loop family L1S45_17320 PF01431 Peptidase family M13 L1S45_17320 PF05649 Peptidase family M13 L1S45_17330 PF00005 ABC transporter L1S45_17330 PF16326 ABC transporter C-terminal domain L1S45_17330 PF12848 ABC transporter L1S45_17335 PF13302 Acetyltransferase (GNAT) domain L1S45_17340 PF13520 Amino acid permease L1S45_17350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_17350 PF03466 LysR substrate binding domain L1S45_17360 PF08543 Phosphomethylpyrimidine kinase L1S45_17365 PF01276 Orn/Lys/Arg decarboxylase, major domain L1S45_17365 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain L1S45_17365 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain L1S45_17370 PF13520 Amino acid permease L1S45_17375 PF18500 CadC C-terminal domain 1 L1S45_17375 PF00486 Transcriptional regulatory protein, C terminal L1S45_17380 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit L1S45_17385 PF07733 Bacterial DNA polymerase III alpha NTPase domain L1S45_17385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain L1S45_17385 PF14579 Helix-hairpin-helix motif L1S45_17385 PF02811 PHP domain L1S45_17385 PF01336 OB-fold nucleic acid binding domain L1S45_17390 PF01351 Ribonuclease HII L1S45_17395 PF02684 Lipid-A-disaccharide synthetase L1S45_17400 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 L1S45_17400 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_17405 PF07977 FabA-like domain L1S45_17410 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_17410 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD L1S45_17415 PF03938 Outer membrane protein (OmpH-like) L1S45_17420 PF01103 Surface antigen L1S45_17420 PF07244 Surface antigen variable number repeat L1S45_17425 PF02163 Peptidase family M50 L1S45_17425 PF17820 PDZ domain L1S45_17430 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase L1S45_17430 PF13288 DXP reductoisomerase C-terminal domain L1S45_17430 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain L1S45_17440 PF01255 Putative undecaprenyl diphosphate synthase L1S45_17445 PF01765 Ribosome recycling factor L1S45_17450 PF00696 Amino acid kinase family L1S45_17455 PF00889 Elongation factor TS L1S45_17460 PF00318 Ribosomal protein S2 L1S45_17465 PF00557 Metallopeptidase family M24 L1S45_17470 PF08335 GlnD PII-uridylyltransferase L1S45_17470 PF01966 HD domain L1S45_17470 PF01909 Nucleotidyltransferase domain L1S45_17470 PF01842 ACT domain L1S45_17475 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_17475 PF14602 Hexapeptide repeat of succinyl-transferase L1S45_17475 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal L1S45_17480 PF11944 Protein of unknown function (DUF3461) L1S45_17485 PF02378 Phosphotransferase system, EIIC L1S45_17485 PF00367 phosphotransferase system, EIIB L1S45_17490 PF07148 Maltose operon periplasmic protein precursor (MalM) L1S45_17495 PF02264 LamB porin L1S45_17500 PF00258 Flavodoxin L1S45_17505 PF00849 RNA pseudouridylate synthase L1S45_17510 PF04287 tRNA pseudouridine synthase C L1S45_17535 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) L1S45_17540 PF07348 Syd protein (SUKH-2) L1S45_17545 PF14489 QueF-like protein L1S45_17545 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term L1S45_17555 PF00990 Diguanylate cyclase, GGDEF domain L1S45_17560 PF03641 Possible lysine decarboxylase L1S45_17560 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases L1S45_17560 PF11892 Domain of unknown function (DUF3412) L1S45_17565 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain L1S45_17565 PF01367 5'-3' exonuclease, C-terminal SAM fold L1S45_17570 PF00180 Isocitrate/isopropylmalate dehydrogenase L1S45_17570 PF18324 Hypothetical protein TT1725 L1S45_17580 PF01728 FtsJ-like methyltransferase L1S45_17580 PF18125 RlmM ferredoxin-like domain L1S45_17585 PF04241 Protein of unknown function (DUF423) L1S45_17595 PF03466 LysR substrate binding domain L1S45_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_17600 PF00672 HAMP domain L1S45_17600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_17605 PF11798 IMS family HHH motif L1S45_17605 PF11799 impB/mucB/samB family C-terminal domain L1S45_17605 PF00817 impB/mucB/samB family L1S45_17620 PF02424 ApbE family L1S45_17625 PF00111 2Fe-2S iron-sulfur cluster binding domain L1S45_17625 PF00175 Oxidoreductase NAD-binding domain L1S45_17625 PF00970 Oxidoreductase FAD-binding domain L1S45_17630 PF02508 Rnf-Nqr subunit, membrane protein L1S45_17635 PF02508 Rnf-Nqr subunit, membrane protein L1S45_17640 PF04205 FMN-binding domain L1S45_17645 PF03116 NQR2, RnfD, RnfE family L1S45_17650 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) L1S45_17650 PF11973 NQRA C-terminal domain L1S45_17655 PF01722 BolA-like protein L1S45_17660 PF05175 Methyltransferase small domain L1S45_17670 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD L1S45_17680 PF07690 Major Facilitator Superfamily L1S45_17685 PF03502 Nucleoside-specific channel-forming protein, Tsx L1S45_17690 PF04461 Protein of unknown function (DUF520) L1S45_17695 PF02558 Ketopantoate reductase PanE/ApbA L1S45_17695 PF08546 Ketopantoate reductase PanE/ApbA C terminal L1S45_17700 PF01965 DJ-1/PfpI family L1S45_17705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain L1S45_17705 PF00205 Thiamine pyrophosphate enzyme, central domain L1S45_17705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L1S45_17710 PF03306 Alpha-acetolactate decarboxylase L1S45_17715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_17715 PF03466 LysR substrate binding domain L1S45_17740 PF13503 Domain of unknown function (DUF4123) L1S45_17745 PF04717 Type VI secretion system, phage-baseplate injector L1S45_17755 PF05638 Type VI secretion system effector, Hcp L1S45_17760 PF03472 Autoinducer binding domain L1S45_17760 PF00196 Bacterial regulatory proteins, luxR family L1S45_17770 PF00589 Phage integrase family L1S45_17770 PF13356 Arm DNA-binding domain L1S45_17785 PF00672 HAMP domain L1S45_17785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_17785 PF02743 Cache domain L1S45_17830 PF00690 Cation transporter/ATPase, N-terminus L1S45_17830 PF00689 Cation transporting ATPase, C-terminus L1S45_17865 PF00816 H-NS histone family L1S45_17875 PF05930 Prophage CP4-57 regulatory protein (AlpA) L1S45_17880 PF13148 Protein of unknown function (DUF3987) L1S45_17920 PF04002 RadC-like JAB domain L1S45_17980 PF06965 Na+/H+ antiporter 1 L1S45_17980 PF13462 Thioredoxin L1S45_17985 PF16363 GDP-mannose 4,6 dehydratase L1S45_17990 PF00175 Oxidoreductase NAD-binding domain L1S45_17990 PF00970 Oxidoreductase FAD-binding domain L1S45_17990 PF00111 2Fe-2S iron-sulfur cluster binding domain L1S45_17995 PF03063 Prismane/CO dehydrogenase family L1S45_18000 PF00210 Ferritin-like domain L1S45_18040 PF00106 short chain dehydrogenase L1S45_18050 PF03441 FAD binding domain of DNA photolyase L1S45_18050 PF00875 DNA photolyase L1S45_18055 PF13411 MerR HTH family regulatory protein L1S45_18060 PF08349 Protein of unknown function (DUF1722) L1S45_18090 PF01817 Chorismate mutase type II L1S45_18090 PF00800 Prephenate dehydratase L1S45_18115 PF00455 DeoR C terminal sensor domain L1S45_18115 PF08220 DeoR-like helix-turn-helix domain L1S45_18120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase L1S45_18120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase L1S45_18125 PF17042 Nucleotide-binding C-terminal domain L1S45_18125 PF07005 Sugar-binding N-terminal domain L1S45_18130 PF00596 Class II Aldolase and Adducin N-terminal domain L1S45_18135 PF01261 Xylose isomerase-like TIM barrel L1S45_18140 PF01370 NAD dependent epimerase/dehydratase family L1S45_18145 PF02447 GntP family permease L1S45_18155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_18155 PF00672 HAMP domain L1S45_18155 PF02743 Cache domain L1S45_18160 PF03573 outer membrane porin, OprD family L1S45_18165 PF00106 short chain dehydrogenase L1S45_18190 PF02074 Carboxypeptidase Taq (M32) metallopeptidase L1S45_18200 PF02805 Metal binding domain of Ada L1S45_18200 PF00730 HhH-GPD superfamily base excision DNA repair protein L1S45_18200 PF12833 Helix-turn-helix domain L1S45_18200 PF06029 AlkA N-terminal domain L1S45_18205 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain L1S45_18205 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain L1S45_18220 PF12392 Collagenase L1S45_18220 PF01136 Peptidase family U32 L1S45_18225 PF01810 LysE type translocator L1S45_18230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_18230 PF03466 LysR substrate binding domain L1S45_18235 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III L1S45_18235 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal L1S45_18240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_18240 PF00672 HAMP domain L1S45_18245 PF00072 Response regulator receiver domain L1S45_18255 PF09078 CheY binding L1S45_18255 PF02895 Signal transducing histidine kinase, homodimeric domain L1S45_18255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_18255 PF01627 Hpt domain L1S45_18255 PF01584 CheW-like domain L1S45_18260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_18260 PF00672 HAMP domain L1S45_18260 PF12729 Four helix bundle sensory module for signal transduction L1S45_18265 PF01584 CheW-like domain L1S45_18270 PF00672 HAMP domain L1S45_18270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_18275 PF01739 CheR methyltransferase, SAM binding domain L1S45_18275 PF03705 CheR methyltransferase, all-alpha domain L1S45_18280 PF03975 CheD chemotactic sensory transduction L1S45_18285 PF01339 CheB methylesterase L1S45_18285 PF00072 Response regulator receiver domain L1S45_18290 PF00266 Aminotransferase class-V L1S45_18315 PF00563 EAL domain L1S45_18315 PF01590 GAF domain L1S45_18315 PF00990 Diguanylate cyclase, GGDEF domain L1S45_18315 PF00989 PAS fold L1S45_18320 PF16325 Peptidase family U32 C-terminal domain L1S45_18320 PF01136 Peptidase family U32 L1S45_18325 PF12838 4Fe-4S dicluster domain L1S45_18335 PF01168 Alanine racemase, N-terminal domain L1S45_18335 PF00842 Alanine racemase, C-terminal domain L1S45_18340 PF00772 DnaB-like helicase N terminal domain L1S45_18340 PF03796 DnaB-like helicase C terminal domain L1S45_18350 PF00563 EAL domain L1S45_18350 PF12792 CSS motif domain associated with EAL L1S45_18355 PF02872 5'-nucleotidase, C-terminal domain L1S45_18355 PF00149 Calcineurin-like phosphoesterase L1S45_18375 PF00158 Sigma-54 interaction domain L1S45_18375 PF00072 Response regulator receiver domain L1S45_18375 PF02954 Bacterial regulatory protein, Fis family L1S45_18380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L1S45_18380 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase L1S45_18390 PF04102 SlyX L1S45_18395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L1S45_18400 PF09526 Probable metal-binding protein (DUF2387) L1S45_18410 PF00072 Response regulator receiver domain L1S45_18410 PF01584 CheW-like domain L1S45_18415 PF00561 alpha/beta hydrolase fold L1S45_18420 PF06794 Uncharacterised protein family (UPF0270) L1S45_18425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain L1S45_18425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain L1S45_18425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain L1S45_18430 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family L1S45_18435 PF00535 Glycosyl transferase family 2 L1S45_18440 PF01370 NAD dependent epimerase/dehydratase family L1S45_18440 PF02911 Formyl transferase, C-terminal domain L1S45_18440 PF00551 Formyl transferase L1S45_18445 PF01522 Polysaccharide deacetylase L1S45_18450 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase L1S45_18455 PF00892 EamA-like transporter family L1S45_18460 PF00893 Small Multidrug Resistance protein L1S45_18465 PF00485 Phosphoribulokinase / Uridine kinase family L1S45_18480 PF02566 OsmC-like protein L1S45_18485 PF00027 Cyclic nucleotide-binding domain L1S45_18485 PF13545 Crp-like helix-turn-helix domain L1S45_18490 PF08241 Methyltransferase domain L1S45_18495 PF18416 N-acetylglucosamine binding protein domain 2 L1S45_18495 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading L1S45_18500 PF17945 Beta/Gamma crystallin L1S45_18500 PF12561 ToxR activated gene A lipoprotein domain L1S45_18505 PF08329 Chitinase A, N-terminal domain L1S45_18505 PF00704 Glycosyl hydrolases family 18 L1S45_18510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_18510 PF00512 His Kinase A (phospho-acceptor) domain L1S45_18510 PF00989 PAS fold L1S45_18520 PF13443 Cro/C1-type HTH DNA-binding domain L1S45_18530 PF12832 MFS_1 like family L1S45_18535 PF00593 TonB dependent receptor L1S45_18535 PF07715 TonB-dependent Receptor Plug Domain L1S45_18555 PF01243 Pyridoxamine 5'-phosphate oxidase L1S45_18560 PF06228 Haem utilisation ChuX/HutX L1S45_18570 PF01032 FecCD transport family L1S45_18575 PF00005 ABC transporter L1S45_18590 PF01370 NAD dependent epimerase/dehydratase family L1S45_18600 PF01464 Transglycosylase SLT domain L1S45_18605 PF01048 Phosphorylase superfamily L1S45_18620 PF00005 ABC transporter L1S45_18620 PF12848 ABC transporter L1S45_18630 PF00860 Permease family L1S45_18635 PF00226 DnaJ domain L1S45_18635 PF05099 Tellurite resistance protein TerB L1S45_18640 PF00483 Nucleotidyl transferase L1S45_18645 PF01636 Phosphotransferase enzyme family L1S45_18650 PF04453 LPS transport system D L1S45_18650 PF03968 OstA-like protein L1S45_18655 PF00639 PPIC-type PPIASE domain L1S45_18655 PF09312 SurA N-terminal domain L1S45_18660 PF04166 Pyridoxal phosphate biosynthetic protein PdxA L1S45_18665 PF00398 Ribosomal RNA adenine dimethylase L1S45_18670 PF04379 ApaG domain L1S45_18675 PF00149 Calcineurin-like phosphoesterase L1S45_18685 PF00296 Luciferase-like monooxygenase L1S45_18705 PF00501 AMP-binding enzyme L1S45_18705 PF13193 AMP-binding enzyme C-terminal domain L1S45_18710 PF07670 Nucleoside recognition L1S45_18715 PF01018 GTP1/OBG L1S45_18715 PF01926 50S ribosome-binding GTPase L1S45_18720 PF01016 Ribosomal L27 protein L1S45_18725 PF00829 Ribosomal prokaryotic L21 protein L1S45_18730 PF00348 Polyprenyl synthetase L1S45_18735 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) L1S45_18740 PF01145 SPFH domain / Band 7 family L1S45_18745 PF01145 SPFH domain / Band 7 family L1S45_18745 PF12221 Bacterial membrane protein N terminal L1S45_18750 PF16360 GTP-binding GTPase Middle Region L1S45_18750 PF01926 50S ribosome-binding GTPase L1S45_18750 PF13167 GTP-binding GTPase N-terminal L1S45_18755 PF17209 Hfq protein L1S45_18765 PF08676 MutL C terminal dimerisation domain L1S45_18765 PF01119 DNA mismatch repair protein, C-terminal domain L1S45_18770 PF01520 N-acetylmuramoyl-L-alanine amidase L1S45_18775 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE L1S45_18780 PF03853 YjeF-related protein N-terminus L1S45_18780 PF01256 Carbohydrate kinase L1S45_18785 PF08331 Domain of unknown function (DUF1730) L1S45_18790 PF00480 ROK family L1S45_18800 PF00005 ABC transporter L1S45_18800 PF09383 NIL domain L1S45_18805 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_18810 PF03180 NLPA lipoprotein L1S45_18815 PF02357 Transcription termination factor nusG L1S45_18820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_18820 PF00672 HAMP domain L1S45_18820 PF12729 Four helix bundle sensory module for signal transduction L1S45_18825 PF00563 EAL domain L1S45_18825 PF00990 Diguanylate cyclase, GGDEF domain L1S45_18825 PF03707 Bacterial signalling protein N terminal repeat L1S45_18830 PF09456 RcsC Alpha-Beta-Loop (ABL) L1S45_18830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_18830 PF00512 His Kinase A (phospho-acceptor) domain L1S45_18830 PF00072 Response regulator receiver domain L1S45_18840 PF01966 HD domain L1S45_18840 PF13286 Phosphohydrolase-associated domain L1S45_18845 PF01627 Hpt domain L1S45_18845 PF00072 Response regulator receiver domain L1S45_18845 PF00989 PAS fold L1S45_18845 PF18415 Histidine kinase receptor ArcB trans-membrane domain L1S45_18845 PF00512 His Kinase A (phospho-acceptor) domain L1S45_18845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_18865 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) L1S45_18870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_18870 PF03466 LysR substrate binding domain L1S45_18880 PF01259 SAICAR synthetase L1S45_18885 PF06804 NlpB/DapX lipoprotein L1S45_18890 PF00701 Dihydrodipicolinate synthetase family L1S45_18895 PF01842 ACT domain L1S45_18900 PF00578 AhpC/TSA family L1S45_18905 PF03887 YfbU domain L1S45_18910 PF04217 Protein of unknown function, DUF412 L1S45_18915 PF00871 Acetokinase family L1S45_18920 PF01515 Phosphate acetyl/butaryl transferase L1S45_18920 PF07085 DRTGG domain L1S45_18925 PF10369 Small subunit of acetolactate synthase L1S45_18930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain L1S45_18930 PF00205 Thiamine pyrophosphate enzyme, central domain L1S45_18930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L1S45_18945 PF01569 PAP2 superfamily L1S45_18955 PF00682 HMGL-like L1S45_18955 PF08502 LeuA allosteric (dimerisation) domain L1S45_18960 PF00180 Isocitrate/isopropylmalate dehydrogenase L1S45_18965 PF00330 Aconitase family (aconitate hydratase) L1S45_18970 PF00694 Aconitase C-terminal domain L1S45_18990 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_18995 PF00005 ABC transporter L1S45_19000 PF02562 PhoH-like protein L1S45_19000 PF13638 PIN domain L1S45_19010 PF08343 Ribonucleotide reductase N-terminal L1S45_19010 PF00317 Ribonucleotide reductase, all-alpha domain L1S45_19010 PF02867 Ribonucleotide reductase, barrel domain L1S45_19040 PF18339 RapA N-terminal Tudor like domain 1 L1S45_19040 PF18337 RapA N-terminal Tudor like domain L1S45_19040 PF00176 SNF2 family N-terminal domain L1S45_19040 PF12137 RNA polymerase recycling family C-terminal L1S45_19040 PF00271 Helicase conserved C-terminal domain L1S45_19045 PF00849 RNA pseudouridylate synthase L1S45_19055 PF00990 Diguanylate cyclase, GGDEF domain L1S45_19055 PF00563 EAL domain L1S45_19055 PF13188 PAS domain L1S45_19055 PF03707 Bacterial signalling protein N terminal repeat L1S45_19065 PF00118 TCP-1/cpn60 chaperonin family L1S45_19070 PF00166 Chaperonin 10 Kd subunit L1S45_19075 PF01554 MatE L1S45_19080 PF04186 FxsA cytoplasmic membrane protein L1S45_19085 PF10415 Fumarase C C-terminus L1S45_19085 PF00206 Lyase L1S45_19090 PF03605 Anaerobic c4-dicarboxylate membrane transporter L1S45_19095 PF00267 Gram-negative porin L1S45_19100 PF07690 Major Facilitator Superfamily L1S45_19105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_19105 PF03466 LysR substrate binding domain L1S45_19110 PF03413 Peptidase propeptide and YPEB domain L1S45_19110 PF01447 Thermolysin metallopeptidase, catalytic domain L1S45_19110 PF02868 Thermolysin metallopeptidase, alpha-helical domain L1S45_19110 PF04151 Bacterial pre-peptidase C-terminal domain L1S45_19110 PF07504 Fungalysin/Thermolysin Propeptide Motif L1S45_19115 PF13302 Acetyltransferase (GNAT) domain L1S45_19120 PF13302 Acetyltransferase (GNAT) domain L1S45_19130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold L1S45_19130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain L1S45_19135 PF07690 Major Facilitator Superfamily L1S45_19140 PF01725 Ham1 family L1S45_19145 PF06969 HemN C-terminal domain L1S45_19145 PF04055 Radical SAM superfamily L1S45_19150 PF03889 Alternative ribosome-rescue factor A L1S45_19160 PF13411 MerR HTH family regulatory protein L1S45_19165 PF01808 AICARFT/IMPCHase bienzyme L1S45_19165 PF02142 MGS-like domain L1S45_19170 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain L1S45_19170 PF02844 Phosphoribosylglycinamide synthetase, N domain L1S45_19170 PF02843 Phosphoribosylglycinamide synthetase, C domain L1S45_19190 PF04545 Sigma-70, region 4 L1S45_19190 PF04539 Sigma-70 region 3 L1S45_19190 PF04546 Sigma-70, non-essential region L1S45_19190 PF00140 Sigma-70 factor, region 1.2 L1S45_19190 PF03979 Sigma-70 factor, region 1.1 L1S45_19190 PF04542 Sigma-70 region 2 L1S45_19195 PF10410 DnaB-helicase binding domain of primase L1S45_19195 PF08278 DNA primase DnaG DnaB-binding L1S45_19195 PF08275 DNA primase catalytic core, N-terminal domain L1S45_19195 PF01807 CHC2 zinc finger L1S45_19205 PF01165 Ribosomal protein S21 L1S45_19210 PF00814 Glycoprotease family L1S45_19215 PF00140 Sigma-70 factor, region 1.2 L1S45_19215 PF04542 Sigma-70 region 2 L1S45_19215 PF04539 Sigma-70 region 3 L1S45_19215 PF04545 Sigma-70, region 4 L1S45_19220 PF01476 LysM domain L1S45_19220 PF01551 Peptidase family M23 L1S45_19225 PF09335 SNARE associated Golgi protein L1S45_19235 PF01975 Survival protein SurE L1S45_19240 PF01142 tRNA pseudouridine synthase D (TruD) L1S45_19245 PF02542 YgbB family L1S45_19250 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase L1S45_19255 PF04977 Septum formation initiator L1S45_19260 PF03952 Enolase, N-terminal domain L1S45_19260 PF00113 Enolase, C-terminal TIM barrel domain L1S45_19265 PF00117 Glutamine amidotransferase class-I L1S45_19265 PF06418 CTP synthase N-terminus L1S45_19270 PF03819 MazG nucleotide pyrophosphohydrolase domain L1S45_19275 PF13291 ACT domain L1S45_19275 PF04607 Region found in RelA / SpoT proteins L1S45_19275 PF02824 TGS domain L1S45_19280 PF01938 TRAM domain L1S45_19280 PF05958 tRNA (Uracil-5-)-methyltransferase L1S45_19285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) L1S45_19285 PF00072 Response regulator receiver domain L1S45_19285 PF01627 Hpt domain L1S45_19285 PF00512 His Kinase A (phospho-acceptor) domain L1S45_19285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_19285 PF00672 HAMP domain L1S45_19290 PF07308 Protein of unknown function (DUF1456) L1S45_19295 PF01510 N-acetylmuramoyl-L-alanine amidase L1S45_19300 PF00455 DeoR C terminal sensor domain L1S45_19300 PF08220 DeoR-like helix-turn-helix domain L1S45_19305 PF08013 Tagatose 6 phosphate kinase L1S45_19310 PF01380 SIS domain L1S45_19315 PF03830 PTS system sorbose subfamily IIB component L1S45_19320 PF03609 PTS system sorbose-specific iic component L1S45_19325 PF03613 PTS system mannose/fructose/sorbose family IID component L1S45_19330 PF03610 PTS system fructose IIA component L1S45_19335 PF01979 Amidohydrolase family L1S45_19340 PF01116 Fructose-bisphosphate aldolase class-II L1S45_19345 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ L1S45_19350 PF02565 Recombination protein O C terminal L1S45_19350 PF11967 Recombination protein O N terminal L1S45_19355 PF07650 KH domain L1S45_19355 PF01926 50S ribosome-binding GTPase L1S45_19360 PF00035 Double-stranded RNA binding motif L1S45_19360 PF14622 Ribonuclease-III-like L1S45_19365 PF10502 Signal peptidase, peptidase S26 L1S45_19370 PF00679 Elongation factor G C-terminus L1S45_19370 PF00009 Elongation factor Tu GTP binding domain L1S45_19370 PF03144 Elongation factor Tu domain 2 L1S45_19370 PF06421 GTP-binding protein LepA C-terminus L1S45_19380 PF03888 MucB/RseB N-terminal domain L1S45_19380 PF17188 MucB/RseB C-terminal domain L1S45_19385 PF03873 Anti sigma-E protein RseA, C-terminal domain L1S45_19385 PF03872 Anti sigma-E protein RseA, N-terminal domain L1S45_19390 PF08281 Sigma-70, region 4 L1S45_19390 PF04542 Sigma-70 region 2 L1S45_19395 PF00890 FAD binding domain L1S45_19395 PF02910 Fumarate reductase flavoprotein C-term L1S45_19405 PF03937 Flavinator of succinate dehydrogenase L1S45_19410 PF01571 Aminomethyltransferase folate-binding domain L1S45_19415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_19415 PF03466 LysR substrate binding domain L1S45_19430 PF03091 CutA1 divalent ion tolerance protein L1S45_19435 PF11412 Disulphide bond corrector protein DsbC L1S45_19435 PF02683 Cytochrome C biogenesis protein transmembrane region L1S45_19455 PF01266 FAD dependent oxidoreductase L1S45_19460 PF01116 Fructose-bisphosphate aldolase class-II L1S45_19465 PF00162 Phosphoglycerate kinase L1S45_19470 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain L1S45_19470 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L1S45_19475 PF00480 ROK family L1S45_19480 PF01208 Uroporphyrinogen decarboxylase (URO-D) L1S45_19485 PF00293 NUDIX domain L1S45_19485 PF09297 NADH pyrophosphatase zinc ribbon domain L1S45_19490 PF01619 Proline dehydrogenase L1S45_19490 PF00171 Aldehyde dehydrogenase family L1S45_19490 PF18327 Proline utilization A proline dehydrogenase N-terminal domain L1S45_19490 PF14850 DNA-binding domain of Proline dehydrogenase L1S45_19495 PF08239 Bacterial SH3 domain L1S45_19500 PF00520 Ion transport protein L1S45_19500 PF00027 Cyclic nucleotide-binding domain L1S45_19505 PF00672 HAMP domain L1S45_19505 PF02743 Cache domain L1S45_19505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_19515 PF03710 Glutamate-ammonia ligase adenylyltransferase L1S45_19515 PF08335 GlnD PII-uridylyltransferase L1S45_19530 PF05170 AsmA family L1S45_19535 PF00326 Prolyl oligopeptidase family L1S45_19535 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain L1S45_19540 PF00291 Pyridoxal-phosphate dependent enzyme L1S45_19545 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_19550 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_19555 PF00005 ABC transporter L1S45_19560 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_19565 PF12704 MacB-like periplasmic core domain L1S45_19565 PF00005 ABC transporter L1S45_19565 PF02687 FtsX-like permease family L1S45_19570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L1S45_19575 PF00072 Response regulator receiver domain L1S45_19575 PF00486 Transcriptional regulatory protein, C terminal L1S45_19580 PF16527 Two-component sensor protein CpxA, periplasmic domain L1S45_19580 PF00672 HAMP domain L1S45_19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_19580 PF00512 His Kinase A (phospho-acceptor) domain L1S45_19585 PF00293 NUDIX domain L1S45_19585 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain L1S45_19585 PF09297 NADH pyrophosphatase zinc ribbon domain L1S45_19620 PF03060 Nitronate monooxygenase L1S45_19630 PF00445 Ribonuclease T2 family L1S45_19645 PF00034 Cytochrome c L1S45_19645 PF03150 Di-haem cytochrome c peroxidase L1S45_19650 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase L1S45_19670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_19670 PF03466 LysR substrate binding domain L1S45_19675 PF00271 Helicase conserved C-terminal domain L1S45_19675 PF00270 DEAD/DEAH box helicase L1S45_19685 PF02525 Flavodoxin-like fold L1S45_19690 PF02627 Carboxymuconolactone decarboxylase family L1S45_19700 PF00753 Metallo-beta-lactamase superfamily L1S45_19715 PF01425 Amidase L1S45_19720 PF04371 Porphyromonas-type peptidyl-arginine deiminase L1S45_19725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_19725 PF03466 LysR substrate binding domain L1S45_19730 PF04480 Protein of unknown function (DUF559) L1S45_19740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L1S45_19745 PF00583 Acetyltransferase (GNAT) family L1S45_19755 PF03144 Elongation factor Tu domain 2 L1S45_19755 PF16658 Class II release factor RF3, C-terminal domain L1S45_19755 PF00009 Elongation factor Tu GTP binding domain L1S45_19760 PF00072 Response regulator receiver domain L1S45_19760 PF00990 Diguanylate cyclase, GGDEF domain L1S45_19765 PF13426 PAS domain L1S45_19765 PF00990 Diguanylate cyclase, GGDEF domain L1S45_19765 PF00563 EAL domain L1S45_19770 PF01037 Lrp/AsnC ligand binding domain L1S45_19780 PF05762 VWA domain containing CoxE-like protein L1S45_19785 PF12592 Protein of unknown function (DUF3763) L1S45_19785 PF17868 AAA lid domain L1S45_19785 PF07728 AAA domain (dynein-related subfamily) L1S45_19795 PF00583 Acetyltransferase (GNAT) family L1S45_19805 PF00501 AMP-binding enzyme L1S45_19815 PF04262 Glutamate-cysteine ligase L1S45_19820 PF05193 Peptidase M16 inactive domain L1S45_19820 PF00675 Insulinase (Peptidase family M16) L1S45_19825 PF09335 SNARE associated Golgi protein L1S45_19830 PF00107 Zinc-binding dehydrogenase L1S45_19830 PF08240 Alcohol dehydrogenase GroES-like domain L1S45_19855 PF00970 Oxidoreductase FAD-binding domain L1S45_19855 PF00175 Oxidoreductase NAD-binding domain L1S45_19860 PF01281 Ribosomal protein L9, N-terminal domain L1S45_19860 PF03948 Ribosomal protein L9, C-terminal domain L1S45_19865 PF01084 Ribosomal protein S18 L1S45_19870 PF01250 Ribosomal protein S6 L1S45_19875 PF01566 Natural resistance-associated macrophage protein L1S45_19885 PF03466 LysR substrate binding domain L1S45_19885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_19895 PF07690 Major Facilitator Superfamily L1S45_19915 PF00892 EamA-like transporter family L1S45_19920 PF13673 Acetyltransferase (GNAT) domain L1S45_19930 PF00588 SpoU rRNA Methylase family L1S45_19930 PF08032 RNA 2'-O ribose methyltransferase substrate binding L1S45_19935 PF02567 Phenazine biosynthesis-like protein L1S45_19950 PF17876 Cold shock domain L1S45_19950 PF08461 Ribonuclease R winged-helix domain L1S45_19950 PF08206 Ribonuclease B OB domain L1S45_19950 PF00575 S1 RNA binding domain L1S45_19950 PF00773 RNB domain L1S45_19955 PF00990 Diguanylate cyclase, GGDEF domain L1S45_19960 PF02664 S-Ribosylhomocysteinase (LuxS) L1S45_19970 PF00543 Nitrogen regulatory protein P-II L1S45_19975 PF00795 Carbon-nitrogen hydrolase L1S45_19975 PF02540 NAD synthase L1S45_20005 PF07963 Prokaryotic N-terminal methylation motif L1S45_20005 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor L1S45_20010 PF05567 Neisseria PilC beta-propeller domain L1S45_20035 PF02401 LytB protein L1S45_20040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L1S45_20045 PF01252 Signal peptidase (SPase) II L1S45_20050 PF08264 Anticodon-binding domain of tRNA L1S45_20050 PF00133 tRNA synthetases class I (I, L, M and V) L1S45_20050 PF06827 Zinc finger found in FPG and IleRS L1S45_20055 PF01687 Riboflavin kinase L1S45_20055 PF06574 FAD synthetase L1S45_20060 PF03023 Lipid II flippase MurJ L1S45_20065 PF01649 Ribosomal protein S20 L1S45_20070 PF01022 Bacterial regulatory protein, arsR family L1S45_20075 PF03466 LysR substrate binding domain L1S45_20075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_20085 PF06965 Na+/H+ antiporter 1 L1S45_20090 PF00303 Thymidylate synthase L1S45_20095 PF01790 Prolipoprotein diacylglyceryl transferase L1S45_20100 PF05524 PEP-utilising enzyme, N-terminal L1S45_20100 PF00391 PEP-utilising enzyme, mobile domain L1S45_20100 PF02896 PEP-utilising enzyme, TIM barrel domain L1S45_20100 PF01590 GAF domain L1S45_20105 PF00293 NUDIX domain L1S45_20110 PF02976 DNA mismatch repair enzyme MutH L1S45_20120 PF01245 Ribosomal protein L19 L1S45_20125 PF01746 tRNA (Guanine-1)-methyltransferase L1S45_20130 PF01782 RimM N-terminal domain L1S45_20130 PF05239 PRC-barrel domain L1S45_20135 PF00886 Ribosomal protein S16 L1S45_20140 PF02881 SRP54-type protein, helical bundle domain L1S45_20140 PF02978 Signal peptide binding domain L1S45_20140 PF00448 SRP54-type protein, GTPase domain L1S45_20145 PF01578 Cytochrome C assembly protein L1S45_20150 PF00571 CBS domain L1S45_20150 PF03471 Transporter associated domain L1S45_20150 PF01595 Cyclin M transmembrane N-terminal domain L1S45_20155 PF02082 Transcriptional regulator L1S45_20160 PF00970 Oxidoreductase FAD-binding domain L1S45_20160 PF00042 Globin L1S45_20160 PF00175 Oxidoreductase NAD-binding domain L1S45_20165 PF08238 Sel1 repeat L1S45_20170 PF00056 lactate/malate dehydrogenase, NAD binding domain L1S45_20170 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain L1S45_20175 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_20180 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_20185 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_20190 PF00005 ABC transporter L1S45_20195 PF01316 Arginine repressor, DNA binding domain L1S45_20195 PF02863 Arginine repressor, C-terminal domain L1S45_20200 PF04261 Dyp-type peroxidase family L1S45_20205 PF00005 ABC transporter L1S45_20205 PF08402 TOBE domain L1S45_20215 PF13416 Bacterial extracellular solute-binding protein L1S45_20220 PF00543 Nitrogen regulatory protein P-II L1S45_20225 PF00472 RF-1 domain L1S45_20230 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain L1S45_20230 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain L1S45_20235 PF01773 Na+ dependent nucleoside transporter N-terminus L1S45_20235 PF07662 Na+ dependent nucleoside transporter C-terminus L1S45_20235 PF07670 Nucleoside recognition L1S45_20240 PF03466 LysR substrate binding domain L1S45_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_20245 PF00255 Glutathione peroxidase L1S45_20255 PF02595 Glycerate kinase family L1S45_20260 PF02447 GntP family permease L1S45_20265 PF17853 GGDEF-like domain L1S45_20265 PF13556 PucR C-terminal helix-turn-helix domain L1S45_20265 PF05651 Putative sugar diacid recognition L1S45_20270 PF06062 Uncharacterised protein family (UPF0231) L1S45_20285 PF03372 Endonuclease/Exonuclease/phosphatase family L1S45_20300 PF00270 DEAD/DEAH box helicase L1S45_20300 PF00271 Helicase conserved C-terminal domain L1S45_20310 PF08534 Redoxin L1S45_20315 PF00403 Heavy-metal-associated domain L1S45_20320 PF18494 Pullulanase Ins domain L1S45_20320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) L1S45_20320 PF11852 Domain of unknown function (DUF3372) L1S45_20320 PF17967 Pullulanase N2 domain L1S45_20320 PF03714 Bacterial pullanase-associated domain L1S45_20335 PF02583 Metal-sensitive transcriptional repressor L1S45_20340 PF00155 Aminotransferase class I and II L1S45_20345 PF03466 LysR substrate binding domain L1S45_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_20355 PF04055 Radical SAM superfamily L1S45_20360 PF11230 Protein of unknown function (DUF3029) L1S45_20380 PF03572 Peptidase family S41 L1S45_20380 PF07676 WD40-like Beta Propeller Repeat L1S45_20380 PF14685 Tricorn protease PDZ domain L1S45_20380 PF14684 Tricorn protease C1 domain L1S45_20410 PF08269 Cache domain L1S45_20410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_20415 PF18416 N-acetylglucosamine binding protein domain 2 L1S45_20415 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading L1S45_20420 PF03466 LysR substrate binding domain L1S45_20420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_20425 PF12857 TOBE-like domain L1S45_20425 PF00005 ABC transporter L1S45_20430 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_20435 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_20450 PF13194 Domain of unknown function (DUF4010) L1S45_20455 PF12464 Maltose acetyltransferase L1S45_20455 PF14602 Hexapeptide repeat of succinyl-transferase L1S45_20480 PF00206 Lyase L1S45_20480 PF14698 Argininosuccinate lyase C-terminal L1S45_20485 PF00764 Arginosuccinate synthase L1S45_20490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain L1S45_20490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain L1S45_20495 PF00696 Amino acid kinase family L1S45_20500 PF01118 Semialdehyde dehydrogenase, NAD binding domain L1S45_20500 PF02774 Semialdehyde dehydrogenase, dimerisation domain L1S45_20505 PF01546 Peptidase family M20/M25/M40 L1S45_20505 PF07687 Peptidase dimerisation domain L1S45_20510 PF00311 Phosphoenolpyruvate carboxylase L1S45_20515 PF03447 Homoserine dehydrogenase, NAD binding domain L1S45_20515 PF00742 Homoserine dehydrogenase L1S45_20515 PF00696 Amino acid kinase family L1S45_20520 PF01053 Cys/Met metabolism PLP-dependent enzyme L1S45_20525 PF01340 Met Apo-repressor, MetJ L1S45_20530 PF12833 Helix-turn-helix domain L1S45_20530 PF06445 GyrI-like small molecule binding domain L1S45_20535 PF01588 Putative tRNA binding domain L1S45_20540 PF03222 Tryptophan/tyrosine permease family L1S45_20545 PF00459 Inositol monophosphatase family L1S45_20550 PF00293 NUDIX domain L1S45_20555 PF13419 Haloacid dehalogenase-like hydrolase L1S45_20560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L1S45_20565 PF03466 LysR substrate binding domain L1S45_20565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_20570 PF01479 S4 domain L1S45_20570 PF00579 tRNA synthetases class I (W and Y) L1S45_20575 PF00196 Bacterial regulatory proteins, luxR family L1S45_20580 PF01203 Type II secretion system (T2SS), protein N L1S45_20585 PF04612 Type II secretion system (T2SS), protein M L1S45_20590 PF12693 GspL periplasmic domain L1S45_20590 PF05134 Type II secretion system (T2SS), protein L L1S45_20595 PF03934 Type II secretion system (T2SS), protein K L1S45_20600 PF07963 Prokaryotic N-terminal methylation motif L1S45_20600 PF11612 Type II secretion system (T2SS), protein J L1S45_20605 PF07963 Prokaryotic N-terminal methylation motif L1S45_20605 PF02501 Type II secretion system (T2SS), protein I L1S45_20610 PF12019 Type II transport protein GspH L1S45_20610 PF07963 Prokaryotic N-terminal methylation motif L1S45_20615 PF07963 Prokaryotic N-terminal methylation motif L1S45_20615 PF08334 Type II secretion system (T2SS), protein G L1S45_20620 PF00482 Type II secretion system (T2SS), protein F L1S45_20625 PF00437 Type II/IV secretion system protein L1S45_20630 PF03958 Bacterial type II/III secretion system short domain L1S45_20630 PF00263 Bacterial type II and III secretion system protein L1S45_20635 PF11356 Type II secretion system protein C L1S45_20640 PF01479 S4 domain L1S45_20645 PF01430 Hsp33 protein L1S45_20650 PF01293 Phosphoenolpyruvate carboxykinase L1S45_20655 PF00392 Bacterial regulatory proteins, gntR family L1S45_20660 PF01321 Creatinase/Prolidase N-terminal domain L1S45_20660 PF00557 Metallopeptidase family M24 L1S45_20665 PF11756 Nitrous oxide-stimulated promoter L1S45_20675 PF00583 Acetyltransferase (GNAT) family L1S45_20680 PF05433 Glycine zipper 2TM domain L1S45_20685 PF02872 5'-nucleotidase, C-terminal domain L1S45_20685 PF00149 Calcineurin-like phosphoesterase L1S45_20690 PF01810 LysE type translocator L1S45_20695 PF00196 Bacterial regulatory proteins, luxR family L1S45_20695 PF03472 Autoinducer binding domain L1S45_20700 PF00765 Autoinducer synthase L1S45_20705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_20705 PF03466 LysR substrate binding domain L1S45_20710 PF00773 RNB domain L1S45_20710 PF17876 Cold shock domain L1S45_20710 PF08206 Ribonuclease B OB domain L1S45_20715 PF00440 Bacterial regulatory proteins, tetR family L1S45_20725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit L1S45_20725 PF02378 Phosphotransferase system, EIIC L1S45_20725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L1S45_20730 PF08125 Mannitol dehydrogenase C-terminal domain L1S45_20730 PF01232 Mannitol dehydrogenase Rossmann domain L1S45_20735 PF05068 Mannitol repressor L1S45_20740 PF00999 Sodium/hydrogen exchanger family L1S45_20740 PF03471 Transporter associated domain L1S45_20740 PF02080 TrkA-C domain L1S45_20760 PF01544 CorA-like Mg2+ transporter protein L1S45_20765 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 L1S45_20780 PF04307 LexA-binding, inner membrane-associated putative hydrolase L1S45_20785 PF07670 Nucleoside recognition L1S45_20785 PF07662 Na+ dependent nucleoside transporter C-terminus L1S45_20785 PF01773 Na+ dependent nucleoside transporter N-terminus L1S45_20790 PF03880 DbpA RNA binding domain L1S45_20790 PF00271 Helicase conserved C-terminal domain L1S45_20790 PF00270 DEAD/DEAH box helicase L1S45_20820 PF01040 UbiA prenyltransferase family L1S45_20825 PF00425 chorismate binding enzyme L1S45_20830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L1S45_20830 PF16582 Middle domain of thiamine pyrophosphate L1S45_20830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain L1S45_20835 PF12697 Alpha/beta hydrolase family L1S45_20840 PF00378 Enoyl-CoA hydratase/isomerase L1S45_20845 PF13378 Enolase C-terminal domain-like L1S45_20850 PF00501 AMP-binding enzyme L1S45_20855 PF00072 Response regulator receiver domain L1S45_20855 PF00486 Transcriptional regulatory protein, C terminal L1S45_20860 PF00419 Fimbrial protein L1S45_20870 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain L1S45_20870 PF02753 Pili assembly chaperone PapD, C-terminal domain L1S45_20875 PF13953 PapC C-terminal domain L1S45_20875 PF00577 Outer membrane usher protein L1S45_20875 PF13954 PapC N-terminal domain L1S45_20885 PF00419 Fimbrial protein L1S45_20895 PF01752 Collagenase L1S45_20895 PF08453 Peptidase family M9 N-terminal L1S45_20900 PF02698 DUF218 domain L1S45_20905 PF02777 Iron/manganese superoxide dismutases, C-terminal domain L1S45_20905 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain L1S45_20915 PF00561 alpha/beta hydrolase fold L1S45_20920 PF03280 Proteobacterial lipase chaperone protein L1S45_20935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L1S45_20935 PF12793 Sugar transport-related sRNA regulator N-term L1S45_20945 PF01053 Cys/Met metabolism PLP-dependent enzyme L1S45_20955 PF00465 Iron-containing alcohol dehydrogenase L1S45_20965 PF03577 Peptidase family C69 L1S45_20970 PF00106 short chain dehydrogenase L1S45_20990 PF02308 MgtC family L1S45_20995 PF00128 Alpha amylase, catalytic domain L1S45_20995 PF02903 Alpha amylase, N-terminal ig-like domain L1S45_20995 PF16657 Maltogenic Amylase, C-terminal domain L1S45_21010 PF00884 Sulfatase L1S45_21015 PF01037 Lrp/AsnC ligand binding domain L1S45_21025 PF04204 Homoserine O-succinyltransferase L1S45_21030 PF00013 KH domain L1S45_21030 PF12072 Domain of unknown function (DUF3552) L1S45_21030 PF01966 HD domain L1S45_21035 PF02464 Competence-damaged protein L1S45_21035 PF00994 Probable molybdopterin binding domain L1S45_21045 PF00005 ABC transporter L1S45_21065 PF07722 Peptidase C26 L1S45_21075 PF13545 Crp-like helix-turn-helix domain L1S45_21075 PF00027 Cyclic nucleotide-binding domain L1S45_21085 PF13419 Haloacid dehalogenase-like hydrolase L1S45_21090 PF00589 Phage integrase family L1S45_21090 PF02899 Phage integrase, N-terminal SAM-like domain L1S45_21100 PF01678 Diaminopimelate epimerase L1S45_21105 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain L1S45_21105 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain L1S45_21115 PF01491 Frataxin-like domain L1S45_21120 PF02230 Phospholipase/Carboxylesterase L1S45_21125 PF12633 Adenylate cyclase NT domain L1S45_21125 PF01295 Adenylate cyclase, class-I L1S45_21130 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain L1S45_21130 PF03900 Porphobilinogen deaminase, C-terminal domain L1S45_21135 PF02602 Uroporphyrinogen-III synthase HemD L1S45_21140 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase L1S45_21150 PF03692 Putative zinc- or iron-chelating domain L1S45_21155 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded L1S45_21170 PF00593 TonB dependent receptor L1S45_21170 PF07715 TonB-dependent Receptor Plug Domain L1S45_21190 PF00583 Acetyltransferase (GNAT) family L1S45_21190 PF13508 Acetyltransferase (GNAT) domain L1S45_21195 PF01638 HxlR-like helix-turn-helix L1S45_21215 PF06055 Exopolysaccharide synthesis, ExoD L1S45_21225 PF00990 Diguanylate cyclase, GGDEF domain L1S45_21245 PF13036 Peptidoglycan-synthase activator LpoB L1S45_21250 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_21270 PF06968 Biotin and Thiamin Synthesis associated domain L1S45_21270 PF04055 Radical SAM superfamily L1S45_21275 PF05690 Thiazole biosynthesis protein ThiG L1S45_21285 PF00899 ThiF family L1S45_21290 PF02581 Thiamine monophosphate synthase L1S45_21295 PF13667 ThiC-associated domain L1S45_21295 PF01964 Radical SAM ThiC family L1S45_21300 PF03738 Glutathionylspermidine synthase preATP-grasp L1S45_21310 PF03994 Domain of Unknown Function (DUF350) L1S45_21315 PF03440 Aerolysin/Pertussis toxin (APT) domain L1S45_21315 PF01117 Aerolysin toxin L1S45_21330 PF00486 Transcriptional regulatory protein, C terminal L1S45_21330 PF00072 Response regulator receiver domain L1S45_21335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_21340 PF08443 RimK-like ATP-grasp domain L1S45_21340 PF18030 RimK PreATP-grasp domain L1S45_21350 PF02607 B12 binding domain L1S45_21350 PF00809 Pterin binding enzyme L1S45_21350 PF02574 Homocysteine S-methyltransferase L1S45_21350 PF02310 B12 binding domain L1S45_21350 PF02965 Vitamin B12 dependent methionine synthase, activation domain L1S45_21355 PF00999 Sodium/hydrogen exchanger family L1S45_21365 PF00356 Bacterial regulatory proteins, lacI family L1S45_21370 PF03553 Na+/H+ antiporter family L1S45_21375 PF00155 Aminotransferase class I and II L1S45_21385 PF08668 HDOD domain L1S45_21395 PF04228 Putative neutral zinc metallopeptidase L1S45_21400 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) L1S45_21415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L1S45_21415 PF13426 PAS domain L1S45_21415 PF08447 PAS fold L1S45_21430 PF00672 HAMP domain L1S45_21430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_21430 PF00512 His Kinase A (phospho-acceptor) domain L1S45_21430 PF01627 Hpt domain L1S45_21430 PF00072 Response regulator receiver domain L1S45_21430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) L1S45_21435 PF00072 Response regulator receiver domain L1S45_21445 PF07690 Major Facilitator Superfamily L1S45_21450 PF01914 MarC family integral membrane protein L1S45_21460 PF01523 Putative modulator of DNA gyrase L1S45_21465 PF00795 Carbon-nitrogen hydrolase L1S45_21475 PF13502 AsmA-like C-terminal region L1S45_21475 PF13116 Protein of unknown function L1S45_21480 PF00575 S1 RNA binding domain L1S45_21480 PF10150 Ribonuclease E/G family L1S45_21485 PF02545 Maf-like protein L1S45_21490 PF04093 rod shape-determining protein MreD L1S45_21495 PF04085 rod shape-determining protein MreC L1S45_21525 PF07963 Prokaryotic N-terminal methylation motif L1S45_21525 PF00114 Pilin (bacterial filament) L1S45_21530 PF07963 Prokaryotic N-terminal methylation motif L1S45_21530 PF00114 Pilin (bacterial filament) L1S45_21535 PF07963 Prokaryotic N-terminal methylation motif L1S45_21545 PF00482 Type II secretion system (T2SS), protein F L1S45_21550 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain L1S45_21550 PF00437 Type II/IV secretion system protein L1S45_21565 PF03958 Bacterial type II/III secretion system short domain L1S45_21565 PF00263 Bacterial type II and III secretion system protein L1S45_21595 PF17157 Gammaproteobacterial periplasmic sensor domain L1S45_21595 PF00990 Diguanylate cyclase, GGDEF domain L1S45_21595 PF00563 EAL domain L1S45_21600 PF12792 CSS motif domain associated with EAL L1S45_21600 PF00563 EAL domain L1S45_21605 PF01699 Sodium/calcium exchanger protein L1S45_21610 PF00221 Aromatic amino acid lyase L1S45_21615 PF01175 Urocanase Rossmann-like domain L1S45_21615 PF17392 Urocanase C-terminal domain L1S45_21615 PF17391 Urocanase N-terminal domain L1S45_21620 PF00491 Arginase family L1S45_21625 PF01979 Amidohydrolase family L1S45_21630 PF00392 Bacterial regulatory proteins, gntR family L1S45_21630 PF07702 UTRA domain L1S45_21635 PF00484 Carbonic anhydrase L1S45_21640 PF04542 Sigma-70 region 2 L1S45_21640 PF04545 Sigma-70, region 4 L1S45_21640 PF00140 Sigma-70 factor, region 1.2 L1S45_21645 PF18075 FtsX extracellular domain L1S45_21650 PF00005 ABC transporter L1S45_21655 PF00448 SRP54-type protein, GTPase domain L1S45_21655 PF02881 SRP54-type protein, helical bundle domain L1S45_21675 PF00440 Bacterial regulatory proteins, tetR family L1S45_21685 PF13091 PLD-like domain L1S45_21695 PF01464 Transglycosylase SLT domain L1S45_21705 PF02416 mttA/Hcf106 family L1S45_21710 PF03466 LysR substrate binding domain L1S45_21710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_21715 PF01914 MarC family integral membrane protein L1S45_21720 PF10678 Protein of unknown function (DUF2492) L1S45_21725 PF00375 Sodium:dicarboxylate symporter family L1S45_21735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_21735 PF03466 LysR substrate binding domain L1S45_21740 PF13533 Biotin-lipoyl like L1S45_21745 PF07690 Major Facilitator Superfamily L1S45_21750 PF07947 YhhN family L1S45_21765 PF16868 NMT1-like family L1S45_21770 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain L1S45_21770 PF00326 Prolyl oligopeptidase family L1S45_21785 PF00106 short chain dehydrogenase L1S45_21790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_21790 PF03466 LysR substrate binding domain L1S45_21795 PF02525 Flavodoxin-like fold L1S45_21800 PF00999 Sodium/hydrogen exchanger family L1S45_21800 PF02254 TrkA-N domain L1S45_21850 PF01196 Ribosomal protein L17 L1S45_21855 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain L1S45_21855 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain L1S45_21855 PF01000 RNA polymerase Rpb3/RpoA insert domain L1S45_21860 PF00163 Ribosomal protein S4/S9 N-terminal domain L1S45_21860 PF01479 S4 domain L1S45_21865 PF00411 Ribosomal protein S11 L1S45_21870 PF00416 Ribosomal protein S13/S18 L1S45_21875 PF00444 Ribosomal protein L36 L1S45_21880 PF00344 SecY translocase L1S45_21885 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A L1S45_21890 PF00327 Ribosomal protein L30p/L7e L1S45_21895 PF03719 Ribosomal protein S5, C-terminal domain L1S45_21895 PF00333 Ribosomal protein S5, N-terminal domain L1S45_21900 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast L1S45_21905 PF00347 Ribosomal protein L6 L1S45_21910 PF00410 Ribosomal protein S8 L1S45_21915 PF00253 Ribosomal protein S14p/S29e L1S45_21920 PF00281 Ribosomal protein L5 L1S45_21920 PF00673 ribosomal L5P family C-terminus L1S45_21925 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 L1S45_21925 PF00467 KOW motif L1S45_21930 PF00238 Ribosomal protein L14p/L23e L1S45_21935 PF00366 Ribosomal protein S17 L1S45_21940 PF00831 Ribosomal L29 protein L1S45_21945 PF00252 Ribosomal protein L16p/L10e L1S45_21950 PF07650 KH domain L1S45_21950 PF00189 Ribosomal protein S3, C-terminal domain L1S45_21955 PF00237 Ribosomal protein L22p/L17e L1S45_21960 PF00203 Ribosomal protein S19 L1S45_21965 PF03947 Ribosomal Proteins L2, C-terminal domain L1S45_21965 PF00181 Ribosomal Proteins L2, RNA binding domain L1S45_21970 PF00276 Ribosomal protein L23 L1S45_21975 PF00573 Ribosomal protein L4/L1 family L1S45_21980 PF00297 Ribosomal protein L3 L1S45_21985 PF00338 Ribosomal protein S10p/S20e L1S45_21995 PF00512 His Kinase A (phospho-acceptor) domain L1S45_21995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_21995 PF00672 HAMP domain L1S45_22000 PF00072 Response regulator receiver domain L1S45_22000 PF00486 Transcriptional regulatory protein, C terminal L1S45_22005 PF03449 Transcription elongation factor, N-terminal L1S45_22005 PF01272 Transcription elongation factor, GreA/GreB, C-term L1S45_22010 PF00575 S1 RNA binding domain L1S45_22010 PF16921 Tex protein YqgF-like domain L1S45_22010 PF09371 Tex-like protein N-terminal domain L1S45_22010 PF17674 HHH domain L1S45_22015 PF02899 Phage integrase, N-terminal SAM-like domain L1S45_22015 PF00589 Phage integrase family L1S45_22100 PF00561 alpha/beta hydrolase fold L1S45_22105 PF00156 Phosphoribosyl transferase domain L1S45_22110 PF01106 NifU-like domain L1S45_22110 PF01521 Iron-sulphur cluster biosynthesis L1S45_22115 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus L1S45_22115 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus L1S45_22120 PF02556 Preprotein translocase subunit SecB L1S45_22125 PF00581 Rhodanese-like domain L1S45_22130 PF06415 BPG-independent PGAM N-terminus (iPGM_N) L1S45_22130 PF01676 Metalloenzyme superfamily L1S45_22135 PF01551 Peptidase family M23 L1S45_22145 PF00356 Bacterial regulatory proteins, lacI family L1S45_22145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family L1S45_22150 PF01081 KDPG and KHG aldolase L1S45_22155 PF00920 Dehydratase family L1S45_22160 PF01202 Shikimate kinase L1S45_22165 PF02447 GntP family permease L1S45_22170 PF13091 PLD-like domain L1S45_22175 PF00271 Helicase conserved C-terminal domain L1S45_22175 PF00270 DEAD/DEAH box helicase L1S45_22175 PF17191 RecG wedge domain L1S45_22185 PF00583 Acetyltransferase (GNAT) family L1S45_22185 PF09500 Putative thioesterase (yiiD_Cterm) L1S45_22195 PF02580 D-Tyr-tRNA(Tyr) deacylase L1S45_22200 PF03631 Virulence factor BrkB L1S45_22205 PF00679 Elongation factor G C-terminus L1S45_22205 PF03144 Elongation factor Tu domain 2 L1S45_22205 PF00009 Elongation factor Tu GTP binding domain L1S45_22210 PF03951 Glutamine synthetase, beta-Grasp domain L1S45_22210 PF00120 Glutamine synthetase, catalytic domain L1S45_22220 PF00512 His Kinase A (phospho-acceptor) domain L1S45_22220 PF00989 PAS fold L1S45_22220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_22225 PF02954 Bacterial regulatory protein, Fis family L1S45_22225 PF00072 Response regulator receiver domain L1S45_22225 PF00158 Sigma-54 interaction domain L1S45_22230 PF00962 Adenosine/AMP deaminase L1S45_22235 PF06969 HemN C-terminal domain L1S45_22235 PF04055 Radical SAM superfamily L1S45_22240 PF10675 Protein of unknown function (DUF2489) L1S45_22245 PF04220 Der GTPase activator (YihI) L1S45_22250 PF00034 Cytochrome c L1S45_22255 PF01926 50S ribosome-binding GTPase L1S45_22260 PF07369 Protein of unknown function (DUF1488) L1S45_22265 PF08501 Shikimate dehydrogenase substrate binding domain L1S45_22265 PF01488 Shikimate / quinate 5-dehydrogenase L1S45_22265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain L1S45_22270 PF01218 Coproporphyrinogen III oxidase L1S45_22275 PF01300 Telomere recombination L1S45_22280 PF00731 AIR carboxylase L1S45_22285 PF01396 Topoisomerase DNA binding C4 zinc finger L1S45_22290 PF04361 Protein of unknown function (DUF494) L1S45_22295 PF17782 DprA winged helix domain L1S45_22295 PF02481 DNA recombination-mediator protein A L1S45_22305 PF01327 Polypeptide deformylase L1S45_22310 PF02911 Formyl transferase, C-terminal domain L1S45_22310 PF00551 Formyl transferase L1S45_22315 PF01189 16S rRNA methyltransferase RsmB/F L1S45_22315 PF01029 NusB family L1S45_22320 PF02080 TrkA-C domain L1S45_22320 PF02254 TrkA-N domain L1S45_22325 PF02386 Cation transport protein L1S45_22330 PF02646 RmuC family L1S45_22345 PF02082 Transcriptional regulator L1S45_22350 PF00294 pfkB family carbohydrate kinase L1S45_22355 PF01262 Alanine dehydrogenase/PNT, C-terminal domain L1S45_22355 PF05222 Alanine dehydrogenase/PNT, N-terminal domain L1S45_22360 PF00117 Glutamine amidotransferase class-I L1S45_22360 PF00958 GMP synthase C terminal domain L1S45_22360 PF02540 NAD synthase L1S45_22365 PF00171 Aldehyde dehydrogenase family L1S45_22370 PF00202 Aminotransferase class-III L1S45_22375 PF01381 Helix-turn-helix L1S45_22375 PF07883 Cupin domain L1S45_22380 PF00171 Aldehyde dehydrogenase family L1S45_22390 PF00892 EamA-like transporter family L1S45_22395 PF12833 Helix-turn-helix domain L1S45_22400 PF01810 LysE type translocator L1S45_22405 PF00689 Cation transporting ATPase, C-terminus L1S45_22405 PF00690 Cation transporter/ATPase, N-terminus L1S45_22410 PF04143 Sulphur transport L1S45_22420 PF01810 LysE type translocator L1S45_22430 PF06206 CpeT/CpcT family (DUF1001) L1S45_22465 PF14001 YdfZ protein L1S45_22485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_22485 PF03466 LysR substrate binding domain L1S45_22510 PF13361 UvrD-like helicase C-terminal domain L1S45_22510 PF00580 UvrD/REP helicase N-terminal domain L1S45_22515 PF02608 ABC transporter substrate-binding protein PnrA-like L1S45_22520 PF00005 ABC transporter L1S45_22525 PF02653 Branched-chain amino acid transport system / permease component L1S45_22530 PF02653 Branched-chain amino acid transport system / permease component L1S45_22535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_22535 PF03466 LysR substrate binding domain L1S45_22540 PF00107 Zinc-binding dehydrogenase L1S45_22540 PF08240 Alcohol dehydrogenase GroES-like domain L1S45_22545 PF00756 Putative esterase L1S45_22555 PF03781 Sulfatase-modifying factor enzyme 1 L1S45_22555 PF12867 DinB superfamily L1S45_22560 PF13593 SBF-like CPA transporter family (DUF4137) L1S45_22565 PF13520 Amino acid permease L1S45_22570 PF01588 Putative tRNA binding domain L1S45_22575 PF13520 Amino acid permease L1S45_22580 PF04074 YhcH/YjgK/YiaL L1S45_22585 PF02929 Beta galactosidase small chain L1S45_22585 PF02837 Glycosyl hydrolases family 2, sugar binding domain L1S45_22585 PF02836 Glycosyl hydrolases family 2, TIM barrel domain L1S45_22585 PF00703 Glycosyl hydrolases family 2 L1S45_22585 PF16353 Domain of unknown function(DUF4981) L1S45_22590 PF00356 Bacterial regulatory proteins, lacI family L1S45_22625 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_22630 PF01612 3'-5' exonuclease L1S45_22630 PF00476 DNA polymerase family A L1S45_22630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain L1S45_22630 PF01367 5'-3' exonuclease, C-terminal SAM fold L1S45_22640 PF06005 Cell division protein ZapB L1S45_22650 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_22650 PF06426 Serine acetyltransferase, N-terminal L1S45_22655 PF16916 Dimerisation domain of Zinc Transporter L1S45_22655 PF01545 Cation efflux family L1S45_22660 PF00486 Transcriptional regulatory protein, C terminal L1S45_22660 PF00072 Response regulator receiver domain L1S45_22665 PF00512 His Kinase A (phospho-acceptor) domain L1S45_22665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_22665 PF00672 HAMP domain L1S45_22665 PF16527 Two-component sensor protein CpxA, periplasmic domain L1S45_22670 PF00588 SpoU rRNA Methylase family L1S45_22675 PF01554 MatE L1S45_22680 PF02630 SCO1/SenC L1S45_22690 PF00717 Peptidase S24-like L1S45_22690 PF01726 LexA DNA binding domain L1S45_22695 PF01553 Acyltransferase L1S45_22700 PF01040 UbiA prenyltransferase family L1S45_22705 PF04345 Chorismate lyase L1S45_22710 PF03748 Flagellar basal body-associated protein FliL L1S45_22725 PF00107 Zinc-binding dehydrogenase L1S45_22725 PF08240 Alcohol dehydrogenase GroES-like domain L1S45_22730 PF00356 Bacterial regulatory proteins, lacI family L1S45_22730 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family L1S45_22735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L1S45_22745 PF03611 PTS system sugar-specific permease component L1S45_22750 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) L1S45_22755 PF01075 Glycosyltransferase family 9 (heptosyltransferase) L1S45_22760 PF00535 Glycosyl transferase family 2 L1S45_22765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) L1S45_22770 PF01467 Cytidylyltransferase-like L1S45_22775 PF04393 Protein of unknown function (DUF535) L1S45_22780 PF06827 Zinc finger found in FPG and IleRS L1S45_22780 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain L1S45_22780 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain L1S45_22790 PF00471 Ribosomal protein L33 L1S45_22795 PF00830 Ribosomal L28 family L1S45_22800 PF04002 RadC-like JAB domain L1S45_22805 PF04127 DNA / pantothenate metabolism flavoprotein L1S45_22805 PF02441 Flavoprotein L1S45_22810 PF00692 dUTPase L1S45_22815 PF00440 Bacterial regulatory proteins, tetR family L1S45_22820 PF00924 Mechanosensitive ion channel L1S45_22820 PF05552 Conserved TM helix L1S45_22830 PF00342 Phosphoglucose isomerase L1S45_22835 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain L1S45_22835 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain L1S45_22840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L1S45_22840 PF03466 LysR substrate binding domain L1S45_22855 PF00583 Acetyltransferase (GNAT) family L1S45_22855 PF13380 CoA binding domain L1S45_22855 PF13607 Succinyl-CoA ligase like flavodoxin domain L1S45_22880 PF12724 Flavodoxin domain L1S45_22885 PF02386 Cation transport protein L1S45_22890 PF09186 Domain of unknown function (DUF1949) L1S45_22890 PF01205 Uncharacterized protein family UPF0029 L1S45_22895 PF00557 Metallopeptidase family M24 L1S45_22900 PF00501 AMP-binding enzyme L1S45_22900 PF13193 AMP-binding enzyme C-terminal domain L1S45_22905 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain L1S45_22905 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain L1S45_22905 PF00378 Enoyl-CoA hydratase/isomerase L1S45_22910 PF02803 Thiolase, C-terminal domain L1S45_22910 PF00108 Thiolase, N-terminal domain L1S45_22915 PF00486 Transcriptional regulatory protein, C terminal L1S45_22915 PF00072 Response regulator receiver domain L1S45_22920 PF00512 His Kinase A (phospho-acceptor) domain L1S45_22920 PF00672 HAMP domain L1S45_22920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_22925 PF01547 Bacterial extracellular solute-binding protein L1S45_22935 PF01206 Sulfurtransferase TusA L1S45_22940 PF01042 Endoribonuclease L-PSP L1S45_22950 PF00691 OmpA family L1S45_22950 PF13488 Glycine zipper L1S45_22955 PF00857 Isochorismatase family L1S45_22960 PF03352 Methyladenine glycosylase L1S45_22965 PF02091 Glycyl-tRNA synthetase alpha subunit L1S45_22970 PF05746 DALR anticodon binding domain L1S45_22970 PF02092 Glycyl-tRNA synthetase beta subunit L1S45_22985 PF01202 Shikimate kinase L1S45_23005 PF03496 ADP-ribosyltransferase exoenzyme L1S45_23005 PF03545 Yersinia virulence determinant (YopE) L1S45_23010 PF05932 Tir chaperone protein (CesT) family L1S45_23020 PF03222 Tryptophan/tyrosine permease family L1S45_23025 PF12801 4Fe-4S binding domain L1S45_23035 PF18113 Rubredoxin binding C-terminal domain L1S45_23035 PF07992 Pyridine nucleotide-disulphide oxidoreductase L1S45_23040 PF00301 Rubredoxin L1S45_23040 PF00753 Metallo-beta-lactamase superfamily L1S45_23040 PF00258 Flavodoxin L1S45_23045 PF01590 GAF domain L1S45_23045 PF00158 Sigma-54 interaction domain L1S45_23050 PF00392 Bacterial regulatory proteins, gntR family L1S45_23050 PF07702 UTRA domain L1S45_23055 PF02378 Phosphotransferase system, EIIC L1S45_23055 PF00367 phosphotransferase system, EIIB L1S45_23060 PF02056 Family 4 glycosyl hydrolase L1S45_23060 PF11975 Family 4 glycosyl hydrolase C-terminal domain L1S45_23065 PF00356 Bacterial regulatory proteins, lacI family L1S45_23070 PF13458 Periplasmic binding protein L1S45_23075 PF02653 Branched-chain amino acid transport system / permease component L1S45_23080 PF11862 Domain of unknown function (DUF3382) L1S45_23080 PF02653 Branched-chain amino acid transport system / permease component L1S45_23085 PF12399 Branched-chain amino acid ATP-binding cassette transporter L1S45_23085 PF00005 ABC transporter L1S45_23090 PF00005 ABC transporter L1S45_23105 PF00581 Rhodanese-like domain L1S45_23110 PF01694 Rhomboid family L1S45_23110 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease L1S45_23115 PF12262 Bacterial virulence factor lipase N-terminal L1S45_23120 PF04380 Membrane fusogenic activity L1S45_23125 PF00175 Oxidoreductase NAD-binding domain L1S45_23130 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase L1S45_23140 PF07497 Rho termination factor, RNA-binding domain L1S45_23140 PF07498 Rho termination factor, N-terminal domain L1S45_23140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L1S45_23145 PF00085 Thioredoxin L1S45_23150 PF00270 DEAD/DEAH box helicase L1S45_23150 PF00271 Helicase conserved C-terminal domain L1S45_23155 PF02541 Ppx/GppA phosphatase family L1S45_23170 PF04445 Putative SAM-dependent methyltransferase L1S45_23175 PF00497 Bacterial extracellular solute-binding proteins, family 3 L1S45_23180 PF00563 EAL domain L1S45_23180 PF00990 Diguanylate cyclase, GGDEF domain L1S45_23180 PF03707 Bacterial signalling protein N terminal repeat L1S45_23185 PF01432 Peptidase family M3 L1S45_23190 PF00490 Delta-aminolevulinic acid dehydratase L1S45_23195 PF01026 TatD related DNase L1S45_23200 PF00902 Sec-independent protein translocase protein (TatC) L1S45_23205 PF02416 mttA/Hcf106 family L1S45_23210 PF02416 mttA/Hcf106 family L1S45_23215 PF03109 ABC1 family L1S45_23220 PF02036 SCP-2 sterol transfer family L1S45_23225 PF01209 ubiE/COQ5 methyltransferase family L1S45_23230 PF02537 CrcB-like protein, Camphor Resistance (CrcB) L1S45_23235 PF07969 Amidohydrolase family L1S45_23280 PF03544 Gram-negative bacterial TonB protein C-terminal L1S45_23285 PF02472 Biopolymer transport protein ExbD/TolR L1S45_23290 PF01618 MotA/TolQ/ExbB proton channel family L1S45_23295 PF01618 MotA/TolQ/ExbB proton channel family L1S45_23305 PF03472 Autoinducer binding domain L1S45_23305 PF00196 Bacterial regulatory proteins, luxR family L1S45_23310 PF01380 SIS domain L1S45_23315 PF00455 DeoR C terminal sensor domain L1S45_23315 PF08220 DeoR-like helix-turn-helix domain L1S45_23320 PF00072 Response regulator receiver domain L1S45_23320 PF00486 Transcriptional regulatory protein, C terminal L1S45_23325 PF00672 HAMP domain L1S45_23325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L1S45_23325 PF00512 His Kinase A (phospho-acceptor) domain L1S45_23330 PF00905 Penicillin binding protein transpeptidase domain L1S45_23335 PF06123 Inner membrane protein CreD L1S45_23340 PF12804 MobA-like NTP transferase domain L1S45_23340 PF00132 Bacterial transferase hexapeptide (six repeats) L1S45_23340 PF14602 Hexapeptide repeat of succinyl-transferase L1S45_23345 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain L1S45_23345 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain L1S45_23350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L1S45_23350 PF02874 ATP synthase alpha/beta family, beta-barrel domain L1S45_23355 PF00231 ATP synthase L1S45_23360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L1S45_23360 PF00306 ATP synthase alpha/beta chain, C terminal domain L1S45_23360 PF02874 ATP synthase alpha/beta family, beta-barrel domain L1S45_23365 PF00213 ATP synthase delta (OSCP) subunit L1S45_23370 PF00430 ATP synthase B/B' CF(0) L1S45_23375 PF00137 ATP synthase subunit C L1S45_23380 PF00119 ATP synthase A chain L1S45_23390 PF17762 HTH domain found in ParB protein L1S45_23390 PF02195 ParB-like nuclease domain L1S45_23395 PF13614 AAA domain L1S45_23400 PF02527 rRNA small subunit methyltransferase G L1S45_23405 PF01134 Glucose inhibited division protein A L1S45_23405 PF13932 GidA associated domain L1S45_23410 PF00258 Flavodoxin L1S45_23415 PF07715 TonB-dependent Receptor Plug Domain L1S45_23415 PF00593 TonB dependent receptor L1S45_23420 PF00005 ABC transporter L1S45_23425 PF00005 ABC transporter L1S45_23435 PF01032 FecCD transport family L1S45_23440 PF01926 50S ribosome-binding GTPase L1S45_23440 PF12631 MnmE helical domain L1S45_23440 PF10396 GTP-binding protein TrmE N-terminus L1S45_23445 PF02096 60Kd inner membrane protein L1S45_23445 PF14849 YidC periplasmic domain L1S45_23450 PF01809 Putative membrane protein insertion efficiency factor L1S45_23455 PF00825 Ribonuclease P L1S45_23460 PF00468 Ribosomal protein L34 L1S45_23465 PF00005 ABC transporter L1S45_23470 PF00528 Binding-protein-dependent transport system inner membrane component L1S45_23475 PF00497 Bacterial extracellular solute-binding proteins, family 3