locus-tag class description LA341_00010 PF03313 Serine dehydratase alpha chain LA341_00020 PF00072 Response regulator receiver domain LA341_00020 PF00486 Transcriptional regulatory protein, C terminal LA341_00025 PF00672 HAMP domain LA341_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_00025 PF00512 His Kinase A (phospho-acceptor) domain LA341_00035 PF07055 Enoyl reductase FAD binding domain LA341_00035 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LA341_00035 PF12241 Trans-2-enoyl-CoA reductase catalytic region LA341_00040 PF00924 Mechanosensitive ion channel LA341_00040 PF12795 Mechanosensitive ion channel porin domain LA341_00040 PF12794 Mechanosensitive ion channel inner membrane domain 1 LA341_00045 PF00155 Aminotransferase class I and II LA341_00055 PF00230 Major intrinsic protein LA341_00060 PF10145 Phage-related minor tail protein LA341_00060 PF01464 Transglycosylase SLT domain LA341_00060 PF01551 Peptidase family M23 LA341_00070 PF07273 Protein of unknown function (DUF1439) LA341_00075 PF13091 PLD-like domain LA341_00075 PF13396 Phospholipase_D-nuclease N-terminal LA341_00085 PF01842 ACT domain LA341_00085 PF00551 Formyl transferase LA341_00090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LA341_00100 PF00085 Thioredoxin LA341_00105 PF01648 4'-phosphopantetheinyl transferase superfamily LA341_00110 PF00877 NlpC/P60 family LA341_00115 PF05971 RNA methyltransferase LA341_00120 PF01575 MaoC like domain LA341_00125 PF00939 Sodium:sulfate symporter transmembrane region LA341_00135 PF17969 L,D-transpeptidase C-terminal domain LA341_00135 PF01476 LysM domain LA341_00135 PF03734 L,D-transpeptidase catalytic domain LA341_00145 PF01380 SIS domain LA341_00145 PF01418 Helix-turn-helix domain, rpiR family LA341_00150 PF02378 Phosphotransferase system, EIIC LA341_00150 PF00367 phosphotransferase system, EIIB LA341_00150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LA341_00155 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LA341_00160 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LA341_00160 PF07676 WD40-like Beta Propeller Repeat LA341_00160 PF00326 Prolyl oligopeptidase family LA341_00165 PF12146 Serine aminopeptidase, S33 LA341_00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_00170 PF03466 LysR substrate binding domain LA341_00175 PF05638 Type VI secretion system effector, Hcp LA341_00180 PF04717 Type VI secretion system, phage-baseplate injector LA341_00205 PF03527 RHS protein LA341_00205 PF05593 RHS Repeat LA341_00220 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LA341_00230 PF05947 Type VI secretion system, TssF LA341_00250 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LA341_00260 PF10431 C-terminal, D2-small domain, of ClpB protein LA341_00260 PF07724 AAA domain (Cdc48 subfamily) LA341_00260 PF00004 ATPase family associated with various cellular activities (AAA) LA341_00260 PF17871 AAA lid domain LA341_00265 PF02954 Bacterial regulatory protein, Fis family LA341_00265 PF00158 Sigma-54 interaction domain LA341_00280 PF06761 Intracellular multiplication and human macrophage-killing LA341_00280 PF14331 ImcF-related N-terminal domain LA341_00280 PF06744 Type VI secretion protein IcmF C-terminal LA341_00295 PF04717 Type VI secretion system, phage-baseplate injector LA341_00300 PF13503 Domain of unknown function (DUF4123) LA341_00325 PF00271 Helicase conserved C-terminal domain LA341_00325 PF00176 SNF2 family N-terminal domain LA341_00325 PF04434 SWIM zinc finger LA341_00330 PF05472 DNA replication terminus site-binding protein (Ter protein) LA341_00340 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LA341_00345 PF01476 LysM domain LA341_00345 PF01464 Transglycosylase SLT domain LA341_00350 PF16123 Hydroxyacylglutathione hydrolase C-terminus LA341_00350 PF00753 Metallo-beta-lactamase superfamily LA341_00355 PF08241 Methyltransferase domain LA341_00360 PF00075 RNase H LA341_00365 PF00929 Exonuclease LA341_00375 PF11849 Domain of unknown function (DUF3369) LA341_00380 PF08021 Siderophore-interacting FAD-binding domain LA341_00380 PF04954 Siderophore-interacting protein LA341_00385 PF07715 TonB-dependent Receptor Plug Domain LA341_00385 PF00593 TonB dependent receptor LA341_00390 PF01032 FecCD transport family LA341_00395 PF01032 FecCD transport family LA341_00400 PF00005 ABC transporter LA341_00405 PF01497 Periplasmic binding protein LA341_00415 PF00873 AcrB/AcrD/AcrF family LA341_00420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_00420 PF00529 HlyD membrane-fusion protein of T1SS LA341_00430 PF00873 AcrB/AcrD/AcrF family LA341_00435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_00440 PF03372 Endonuclease/Exonuclease/phosphatase family LA341_00455 PF02424 ApbE family LA341_00460 PF00127 Copper binding proteins, plastocyanin/azurin family LA341_00470 PF04337 Protein of unknown function, DUF480 LA341_00475 PF00990 Diguanylate cyclase, GGDEF domain LA341_00475 PF00563 EAL domain LA341_00475 PF08448 PAS fold LA341_00480 PF01547 Bacterial extracellular solute-binding protein LA341_00485 PF04325 Protein of unknown function (DUF465) LA341_00495 PF01554 MatE LA341_00515 PF00465 Iron-containing alcohol dehydrogenase LA341_00525 PF00440 Bacterial regulatory proteins, tetR family LA341_00525 PF08359 YsiA-like protein, C-terminal region LA341_00530 PF00171 Aldehyde dehydrogenase family LA341_00540 PF01156 Inosine-uridine preferring nucleoside hydrolase LA341_00555 PF05656 Protein of unknown function (DUF805) LA341_00560 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LA341_00565 PF00528 Binding-protein-dependent transport system inner membrane component LA341_00570 PF00005 ABC transporter LA341_00575 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LA341_00610 PF07971 Glycosyl hydrolase family 92 LA341_00610 PF17678 Glycosyl hydrolase family 92 N-terminal domain LA341_00615 PF01238 Phosphomannose isomerase type I LA341_00620 PF12833 Helix-turn-helix domain LA341_00625 PF00180 Isocitrate/isopropylmalate dehydrogenase LA341_00630 PF01740 STAS domain LA341_00630 PF00916 Sulfate permease family LA341_00640 PF00877 NlpC/P60 family LA341_00645 PF03466 LysR substrate binding domain LA341_00645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_00650 PF00578 AhpC/TSA family LA341_00650 PF10417 C-terminal domain of 1-Cys peroxiredoxin LA341_00670 PF08003 Protein of unknown function (DUF1698) LA341_00675 PF13649 Methyltransferase domain LA341_00680 PF01904 Protein of unknown function DUF72 LA341_00690 PF01336 OB-fold nucleic acid binding domain LA341_00690 PF00152 tRNA synthetases class II (D, K and N) LA341_00690 PF02938 GAD domain LA341_00695 PF01709 Transcriptional regulator LA341_00700 PF00465 Iron-containing alcohol dehydrogenase LA341_00700 PF00171 Aldehyde dehydrogenase family LA341_00705 PF01914 MarC family integral membrane protein LA341_00710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_00715 PF00528 Binding-protein-dependent transport system inner membrane component LA341_00720 PF12911 N-terminal TM domain of oligopeptide transport permease C LA341_00720 PF00528 Binding-protein-dependent transport system inner membrane component LA341_00725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA341_00725 PF00005 ABC transporter LA341_00730 PF00005 ABC transporter LA341_00730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA341_00735 PF03741 Integral membrane protein TerC family LA341_00740 PF01168 Alanine racemase, N-terminal domain LA341_00740 PF00842 Alanine racemase, C-terminal domain LA341_00750 PF00437 Type II/IV secretion system protein LA341_00765 PF01032 FecCD transport family LA341_00770 PF00005 ABC transporter LA341_00775 PF00793 DAHP synthetase I family LA341_00780 PF01219 Prokaryotic diacylglycerol kinase LA341_00785 PF00183 Hsp90 protein LA341_00790 PF01842 ACT domain LA341_00790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA341_00790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA341_00795 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LA341_00800 PF01812 5-formyltetrahydrofolate cyclo-ligase family LA341_00810 PF05173 Dihydrodipicolinate reductase, C-terminus LA341_00810 PF01113 Dihydrodipicolinate reductase, N-terminus LA341_00815 PF00117 Glutamine amidotransferase class-I LA341_00815 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LA341_00820 PF02142 MGS-like domain LA341_00820 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LA341_00820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA341_00825 PF08502 LeuA allosteric (dimerisation) domain LA341_00825 PF00682 HMGL-like LA341_00835 PF07759 Protein of unknown function (DUF1615) LA341_00850 PF00672 HAMP domain LA341_00850 PF12729 Four helix bundle sensory module for signal transduction LA341_00850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_00855 PF18393 MotY N-terminal domain LA341_00855 PF00691 OmpA family LA341_00860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA341_00865 PF00730 HhH-GPD superfamily base excision DNA repair protein LA341_00865 PF10576 Iron-sulfur binding domain of endonuclease III LA341_00865 PF00633 Helix-hairpin-helix motif LA341_00870 PF02508 Rnf-Nqr subunit, membrane protein LA341_00875 PF04205 FMN-binding domain LA341_00880 PF03116 NQR2, RnfD, RnfE family LA341_00885 PF10531 SLBB domain LA341_00885 PF13375 RnfC Barrel sandwich hybrid domain LA341_00885 PF12838 4Fe-4S dicluster domain LA341_00885 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LA341_00890 PF04060 Putative Fe-S cluster LA341_00895 PF02508 Rnf-Nqr subunit, membrane protein LA341_00900 PF04851 Type III restriction enzyme, res subunit LA341_00900 PF00271 Helicase conserved C-terminal domain LA341_00910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA341_00920 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LA341_00920 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LA341_00925 PF01479 S4 domain LA341_00925 PF00849 RNA pseudouridylate synthase LA341_00930 PF10689 Protein of unknown function (DUF2496) LA341_00935 PF03061 Thioesterase superfamily LA341_00945 PF00892 EamA-like transporter family LA341_00950 PF04391 Protein of unknown function (DUF533) LA341_00955 PF00155 Aminotransferase class I and II LA341_00955 PF00392 Bacterial regulatory proteins, gntR family LA341_00960 PF01654 Cytochrome bd terminal oxidase subunit I LA341_00965 PF02322 Cytochrome bd terminal oxidase subunit II LA341_00985 PF05114 Protein of unknown function (DUF692) LA341_01000 PF07690 Major Facilitator Superfamily LA341_01010 PF00248 Aldo/keto reductase family LA341_01045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_01045 PF03466 LysR substrate binding domain LA341_01050 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LA341_01050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LA341_01055 PF00230 Major intrinsic protein LA341_01060 PF07690 Major Facilitator Superfamily LA341_01065 PF00455 DeoR C terminal sensor domain LA341_01065 PF08220 DeoR-like helix-turn-helix domain LA341_01070 PF01266 FAD dependent oxidoreductase LA341_01070 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LA341_01075 PF03009 Glycerophosphoryl diester phosphodiesterase family LA341_01080 PF03974 Ecotin LA341_01085 PF04219 Protein of unknown function, DUF LA341_01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_01090 PF03466 LysR substrate binding domain LA341_01100 PF00155 Aminotransferase class I and II LA341_01105 PF05872 Bacterial protein of unknown function (DUF853) LA341_01120 PF03772 Competence protein LA341_01120 PF00753 Metallo-beta-lactamase superfamily LA341_01125 PF00005 ABC transporter LA341_01125 PF00664 ABC transporter transmembrane region LA341_01130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LA341_01135 PF03966 Trm112p-like protein LA341_01140 PF02348 Cytidylyltransferase LA341_01145 PF00072 Response regulator receiver domain LA341_01145 PF00196 Bacterial regulatory proteins, luxR family LA341_01150 PF01541 GIY-YIG catalytic domain LA341_01150 PF08459 UvrC Helix-hairpin-helix N-terminal LA341_01150 PF02151 UvrB/uvrC motif LA341_01155 PF01066 CDP-alcohol phosphatidyltransferase LA341_01175 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system LA341_01245 PF13737 Transposase DDE domain LA341_01250 PF01136 Peptidase family U32 LA341_01255 PF01136 Peptidase family U32 LA341_01260 PF02036 SCP-2 sterol transfer family LA341_01270 PF00588 SpoU rRNA Methylase family LA341_01275 PF02082 Transcriptional regulator LA341_01280 PF00266 Aminotransferase class-V LA341_01285 PF01592 NifU-like N terminal domain LA341_01290 PF01521 Iron-sulphur cluster biosynthesis LA341_01295 PF07743 HSCB C-terminal oligomerisation domain LA341_01300 PF00012 Hsp70 protein LA341_01305 PF00111 2Fe-2S iron-sulfur cluster binding domain LA341_01310 PF12404 Peptidase LA341_01310 PF00883 Cytosol aminopeptidase family, catalytic domain LA341_01315 PF12404 Peptidase LA341_01315 PF00883 Cytosol aminopeptidase family, catalytic domain LA341_01320 PF00334 Nucleoside diphosphate kinase LA341_01325 PF04055 Radical SAM superfamily LA341_01335 PF13464 Domain of unknown function (DUF4115) LA341_01340 PF04551 GcpE protein LA341_01345 PF13393 Histidyl-tRNA synthetase LA341_01345 PF03129 Anticodon binding domain LA341_01350 PF09976 Tetratricopeptide repeat-like domain LA341_01355 PF13360 PQQ-like domain LA341_01360 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LA341_01360 PF01926 50S ribosome-binding GTPase LA341_01365 PF07191 zinc-ribbons LA341_01375 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_01375 PF01464 Transglycosylase SLT domain LA341_01380 PF02769 AIR synthase related protein, C-terminal domain LA341_01380 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LA341_01380 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LA341_01385 PF03553 Na+/H+ antiporter family LA341_01385 PF13726 Na+-H+ antiporter family LA341_01390 PF00929 Exonuclease LA341_01395 PF01569 PAP2 superfamily LA341_01400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA341_01400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA341_01400 PF11890 Domain of unknown function (DUF3410) LA341_01405 PF01118 Semialdehyde dehydrogenase, NAD binding domain LA341_01405 PF02774 Semialdehyde dehydrogenase, dimerisation domain LA341_01415 PF01416 tRNA pseudouridine synthase LA341_01420 PF01039 Carboxyl transferase domain LA341_01420 PF17848 Acetyl-coA carboxylase zinc finger domain LA341_01425 PF02875 Mur ligase family, glutamate ligase domain LA341_01425 PF08245 Mur ligase middle domain LA341_01430 PF05036 Sporulation related domain LA341_01435 PF01906 Putative heavy-metal-binding LA341_01440 PF00884 Sulfatase LA341_01450 PF00696 Amino acid kinase family LA341_01450 PF01842 ACT domain LA341_01455 PF00583 Acetyltransferase (GNAT) family LA341_01455 PF00696 Amino acid kinase family LA341_01460 PF01625 Peptide methionine sulfoxide reductase LA341_01480 PF00561 alpha/beta hydrolase fold LA341_01485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA341_01495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_01495 PF03466 LysR substrate binding domain LA341_01500 PF02652 L-lactate permease LA341_01505 PF02754 Cysteine-rich domain LA341_01510 PF11870 Domain of unknown function (DUF3390) LA341_01510 PF02589 LUD domain LA341_01510 PF13183 4Fe-4S dicluster domain LA341_01515 PF02589 LUD domain LA341_01520 PF02913 FAD linked oxidases, C-terminal domain LA341_01520 PF01565 FAD binding domain LA341_01550 PF02687 FtsX-like permease family LA341_01550 PF12704 MacB-like periplasmic core domain LA341_01555 PF00005 ABC transporter LA341_01565 PF03600 Citrate transporter LA341_01575 PF07690 Major Facilitator Superfamily LA341_01595 PF01593 Flavin containing amine oxidoreductase LA341_01600 PF03239 Iron permease FTR1 family LA341_01620 PF00733 Asparagine synthase LA341_01620 PF13537 Glutamine amidotransferase domain LA341_01630 PF00999 Sodium/hydrogen exchanger family LA341_01630 PF02254 TrkA-N domain LA341_01635 PF13344 Haloacid dehalogenase-like hydrolase LA341_01640 PF00962 Adenosine/AMP deaminase LA341_01645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA341_01650 PF03471 Transporter associated domain LA341_01650 PF03741 Integral membrane protein TerC family LA341_01660 PF13183 4Fe-4S dicluster domain LA341_01660 PF01565 FAD binding domain LA341_01660 PF02913 FAD linked oxidases, C-terminal domain LA341_01670 PF03061 Thioesterase superfamily LA341_01675 PF00270 DEAD/DEAH box helicase LA341_01675 PF03880 DbpA RNA binding domain LA341_01675 PF00271 Helicase conserved C-terminal domain LA341_01680 PF01966 HD domain LA341_01685 PF01966 HD domain LA341_01695 PF00361 Proton-conducting membrane transporter LA341_01700 PF00361 Proton-conducting membrane transporter LA341_01705 PF00361 Proton-conducting membrane transporter LA341_01705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LA341_01710 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LA341_01715 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LA341_01720 PF12838 4Fe-4S dicluster domain LA341_01725 PF00146 NADH dehydrogenase LA341_01730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA341_01730 PF00384 Molybdopterin oxidoreductase LA341_01730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA341_01735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LA341_01735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LA341_01745 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LA341_01745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LA341_01750 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LA341_01755 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LA341_01760 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA341_01760 PF00691 OmpA family LA341_01765 PF01618 MotA/TolQ/ExbB proton channel family LA341_01785 PF04536 TPM domain LA341_01795 PF03411 Penicillin-insensitive murein endopeptidase LA341_01800 PF00528 Binding-protein-dependent transport system inner membrane component LA341_01805 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_01810 PF00528 Binding-protein-dependent transport system inner membrane component LA341_01815 PF00005 ABC transporter LA341_01825 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LA341_01830 PF00248 Aldo/keto reductase family LA341_01845 PF01212 Beta-eliminating lyase LA341_01855 PF00072 Response regulator receiver domain LA341_01860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_01860 PF03466 LysR substrate binding domain LA341_01865 PF03707 Bacterial signalling protein N terminal repeat LA341_01865 PF13188 PAS domain LA341_01865 PF00990 Diguanylate cyclase, GGDEF domain LA341_01865 PF00563 EAL domain LA341_01870 PF03806 AbgT putative transporter family LA341_01875 PF00881 Nitroreductase family LA341_01890 PF06445 GyrI-like small molecule binding domain LA341_01890 PF12833 Helix-turn-helix domain LA341_01895 PF07715 TonB-dependent Receptor Plug Domain LA341_01895 PF00593 TonB dependent receptor LA341_01905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_01905 PF03466 LysR substrate binding domain LA341_01910 PF08267 Cobalamin-independent synthase, N-terminal domain LA341_01910 PF01717 Cobalamin-independent synthase, Catalytic domain LA341_01915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_01915 PF03466 LysR substrate binding domain LA341_01920 PF00232 Glycosyl hydrolase family 1 LA341_01925 PF18381 YcaO cyclodehydratase C-terminal domain LA341_01925 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LA341_01930 PF01226 Formate/nitrite transporter LA341_01935 PF02901 Pyruvate formate lyase-like LA341_01935 PF01228 Glycine radical LA341_01940 PF03692 Putative zinc- or iron-chelating domain LA341_01955 PF00343 Carbohydrate phosphorylase LA341_01960 PF00939 Sodium:sulfate symporter transmembrane region LA341_01965 PF00085 Thioredoxin LA341_01970 PF00512 His Kinase A (phospho-acceptor) domain LA341_01970 PF01627 Hpt domain LA341_01970 PF00672 HAMP domain LA341_01970 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LA341_01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_01970 PF00072 Response regulator receiver domain LA341_01975 PF00664 ABC transporter transmembrane region LA341_01975 PF00005 ABC transporter LA341_01980 PF00664 ABC transporter transmembrane region LA341_01980 PF00005 ABC transporter LA341_01985 PF02321 Outer membrane efflux protein LA341_01990 PF00873 AcrB/AcrD/AcrF family LA341_01995 PF13533 Biotin-lipoyl like LA341_02000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_02000 PF03466 LysR substrate binding domain LA341_02015 PF01575 MaoC like domain LA341_02020 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LA341_02020 PF00561 alpha/beta hydrolase fold LA341_02040 PF08543 Phosphomethylpyrimidine kinase LA341_02045 PF00583 Acetyltransferase (GNAT) family LA341_02055 PF01928 CYTH domain LA341_02065 PF04560 RNA polymerase Rpb2, domain 7 LA341_02065 PF04563 RNA polymerase beta subunit LA341_02065 PF10385 RNA polymerase beta subunit external 1 domain LA341_02065 PF00562 RNA polymerase Rpb2, domain 6 LA341_02065 PF04561 RNA polymerase Rpb2, domain 2 LA341_02065 PF04565 RNA polymerase Rpb2, domain 3 LA341_02075 PF00285 Citrate synthase, C-terminal domain LA341_02085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LA341_02090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LA341_02095 PF00890 FAD binding domain LA341_02095 PF02910 Fumarate reductase flavoprotein C-term LA341_02100 PF13085 2Fe-2S iron-sulfur cluster binding domain LA341_02105 PF00676 Dehydrogenase E1 component LA341_02105 PF16078 2-oxoglutarate dehydrogenase N-terminus LA341_02105 PF16870 2-oxoglutarate dehydrogenase C-terminal LA341_02105 PF02779 Transketolase, pyrimidine binding domain LA341_02110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LA341_02110 PF00364 Biotin-requiring enzyme LA341_02110 PF02817 e3 binding domain LA341_02115 PF00549 CoA-ligase LA341_02115 PF08442 ATP-grasp domain LA341_02120 PF02629 CoA binding domain LA341_02120 PF00549 CoA-ligase LA341_02130 PF00892 EamA-like transporter family LA341_02135 PF01112 Asparaginase LA341_02150 PF01266 FAD dependent oxidoreductase LA341_02155 PF00528 Binding-protein-dependent transport system inner membrane component LA341_02160 PF00005 ABC transporter LA341_02170 PF00392 Bacterial regulatory proteins, gntR family LA341_02170 PF07702 UTRA domain LA341_02175 PF00266 Aminotransferase class-V LA341_02180 PF00202 Aminotransferase class-III LA341_02190 PF03918 Cytochrome C biogenesis protein LA341_02195 PF08534 Redoxin LA341_02200 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LA341_02200 PF01578 Cytochrome C assembly protein LA341_02205 PF03916 Polysulphide reductase, NrfD LA341_02210 PF00037 4Fe-4S binding domain LA341_02210 PF13247 4Fe-4S dicluster domain LA341_02215 PF13435 Cytochrome c554 and c-prime LA341_02215 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LA341_02220 PF02335 Cytochrome c552 LA341_02230 PF13183 4Fe-4S dicluster domain LA341_02230 PF02754 Cysteine-rich domain LA341_02235 PF00890 FAD binding domain LA341_02240 PF01266 FAD dependent oxidoreductase LA341_02240 PF04324 BFD-like [2Fe-2S] binding domain LA341_02245 PF02810 SEC-C motif LA341_02250 PF00672 HAMP domain LA341_02250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_02250 PF17200 Single Cache domain 2 LA341_02255 PF01047 MarR family LA341_02255 PF00480 ROK family LA341_02260 PF03942 DTW domain LA341_02265 PF01925 Sulfite exporter TauE/SafE LA341_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_02270 PF03466 LysR substrate binding domain LA341_02280 PF12833 Helix-turn-helix domain LA341_02280 PF14525 AraC-binding-like domain LA341_02285 PF11398 Protein of unknown function (DUF2813) LA341_02295 PF00128 Alpha amylase, catalytic domain LA341_02295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA341_02345 PF00883 Cytosol aminopeptidase family, catalytic domain LA341_02345 PF02789 Cytosol aminopeptidase family, N-terminal domain LA341_02350 PF13419 Haloacid dehalogenase-like hydrolase LA341_02360 PF01207 Dihydrouridine synthase (Dus) LA341_02365 PF04304 Protein of unknown function (DUF454) LA341_02370 PF00156 Phosphoribosyl transferase domain LA341_02375 PF12170 DNA polymerase III tau subunit V interacting with alpha LA341_02375 PF12169 DNA polymerase III subunits gamma and tau domain III LA341_02375 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LA341_02380 PF02575 YbaB/EbfC DNA-binding family LA341_02385 PF01261 Xylose isomerase-like TIM barrel LA341_02390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_02390 PF03466 LysR substrate binding domain LA341_02400 PF03279 Bacterial lipid A biosynthesis acyltransferase LA341_02405 PF03279 Bacterial lipid A biosynthesis acyltransferase LA341_02420 PF00136 DNA polymerase family B LA341_02420 PF03104 DNA polymerase family B, exonuclease domain LA341_02435 PF01863 Protein of unknown function DUF45 LA341_02450 PF03606 C4-dicarboxylate anaerobic carrier LA341_02465 PF01266 FAD dependent oxidoreductase LA341_02465 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LA341_02470 PF02801 Beta-ketoacyl synthase, C-terminal domain LA341_02470 PF00109 Beta-ketoacyl synthase, N-terminal domain LA341_02480 PF06826 Predicted Permease Membrane Region LA341_02480 PF02080 TrkA-C domain LA341_02495 PF17757 UvrB interaction domain LA341_02495 PF00271 Helicase conserved C-terminal domain LA341_02495 PF04851 Type III restriction enzyme, res subunit LA341_02495 PF02151 UvrB/uvrC motif LA341_02495 PF12344 Ultra-violet resistance protein B LA341_02505 PF09335 SNARE associated Golgi protein LA341_02510 PF02600 Disulfide bond formation protein DsbB LA341_02515 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LA341_02520 PF00392 Bacterial regulatory proteins, gntR family LA341_02520 PF07840 FadR C-terminal domain LA341_02530 PF07152 YaeQ protein LA341_02540 PF13188 PAS domain LA341_02540 PF02954 Bacterial regulatory protein, Fis family LA341_02540 PF00158 Sigma-54 interaction domain LA341_02570 PF01554 MatE LA341_02575 PF06786 Uncharacterised protein family (UPF0253) LA341_02580 PF00677 Lumazine binding domain LA341_02590 PF13419 Haloacid dehalogenase-like hydrolase LA341_02595 PF02222 ATP-grasp domain LA341_02595 PF01370 NAD dependent epimerase/dehydratase family LA341_02600 PF00892 EamA-like transporter family LA341_02605 PF02525 Flavodoxin-like fold LA341_02630 PF13509 S1 domain LA341_02630 PF17783 CvfB-like winged helix domain LA341_02640 PF04269 Protein of unknown function, DUF440 LA341_02645 PF00912 Transglycosylase LA341_02650 PF04269 Protein of unknown function, DUF440 LA341_02655 PF03776 Septum formation topological specificity factor MinE LA341_02660 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LA341_02665 PF03775 Septum formation inhibitor MinC, C-terminal domain LA341_02665 PF05209 Septum formation inhibitor MinC, N-terminal domain LA341_02670 PF05166 YcgL domain LA341_02675 PF03315 Serine dehydratase beta chain LA341_02675 PF03313 Serine dehydratase alpha chain LA341_02680 PF03313 Serine dehydratase alpha chain LA341_02680 PF03315 Serine dehydratase beta chain LA341_02685 PF06865 Pyrimidine/purine nucleoside phosphorylase LA341_02690 PF00375 Sodium:dicarboxylate symporter family LA341_02700 PF00365 Phosphofructokinase LA341_02705 PF00121 Triosephosphate isomerase LA341_02710 PF02698 DUF218 domain LA341_02715 PF13847 Methyltransferase domain LA341_02720 PF03882 MukF winged-helix domain LA341_02720 PF17193 MukF C-terminal domain LA341_02720 PF17192 MukF middle domain LA341_02725 PF04288 MukE-like family LA341_02730 PF04310 MukB N-terminal LA341_02730 PF16330 MukB hinge domain LA341_02735 PF03330 Lytic transglycolase LA341_02740 PF00583 Acetyltransferase (GNAT) family LA341_02755 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA341_02755 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA341_02760 PF00291 Pyridoxal-phosphate dependent enzyme LA341_02765 PF07687 Peptidase dimerisation domain LA341_02765 PF01546 Peptidase family M20/M25/M40 LA341_02770 PF01979 Amidohydrolase family LA341_02775 PF00696 Amino acid kinase family LA341_02780 PF00892 EamA-like transporter family LA341_02785 PF01699 Sodium/calcium exchanger protein LA341_02790 PF02625 XdhC and CoxI family LA341_02790 PF13478 XdhC Rossmann domain LA341_02800 PF12804 MobA-like NTP transferase domain LA341_02805 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LA341_02805 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_02810 PF01979 Amidohydrolase family LA341_02815 PF00941 FAD binding domain in molybdopterin dehydrogenase LA341_02820 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LA341_02820 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LA341_02820 PF01799 [2Fe-2S] binding domain LA341_02825 PF00860 Permease family LA341_02830 PF01979 Amidohydrolase family LA341_02835 PF00860 Permease family LA341_02840 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LA341_02840 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LA341_02845 PF00941 FAD binding domain in molybdopterin dehydrogenase LA341_02845 PF03450 CO dehydrogenase flavoprotein C-terminal domain LA341_02850 PF01799 [2Fe-2S] binding domain LA341_02850 PF00111 2Fe-2S iron-sulfur cluster binding domain LA341_02855 PF05433 Glycine zipper 2TM domain LA341_02865 PF03606 C4-dicarboxylate anaerobic carrier LA341_02870 PF00501 AMP-binding enzyme LA341_02870 PF13193 AMP-binding enzyme C-terminal domain LA341_02875 PF07694 5TMR of 5TMR-LYT LA341_02875 PF00990 Diguanylate cyclase, GGDEF domain LA341_02880 PF08274 PhnA Zinc-Ribbon LA341_02880 PF03831 PhnA domain LA341_02890 PF00704 Glycosyl hydrolases family 18 LA341_02890 PF08329 Chitinase A, N-terminal domain LA341_02895 PF00728 Glycosyl hydrolase family 20, catalytic domain LA341_02895 PF02838 Glycosyl hydrolase family 20, domain 2 LA341_02895 PF07691 PA14 domain LA341_02905 PF04107 Glutamate-cysteine ligase family 2(GCS2) LA341_02910 PF08448 PAS fold LA341_02910 PF00990 Diguanylate cyclase, GGDEF domain LA341_02920 PF01713 Smr domain LA341_02925 PF05175 Methyltransferase small domain LA341_02930 PF01264 Chorismate synthase LA341_02935 PF00271 Helicase conserved C-terminal domain LA341_02935 PF00270 DEAD/DEAH box helicase LA341_02940 PF03222 Tryptophan/tyrosine permease family LA341_02945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LA341_02945 PF00356 Bacterial regulatory proteins, lacI family LA341_02950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA341_02950 PF00381 PTS HPr component phosphorylation site LA341_02955 PF00294 pfkB family carbohydrate kinase LA341_02960 PF02378 Phosphotransferase system, EIIC LA341_02960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA341_02965 PF06945 Protein of unknown function (DUF1289) LA341_02970 PF06725 3D domain LA341_02970 PF03562 MltA specific insert domain LA341_02975 PF00111 2Fe-2S iron-sulfur cluster binding domain LA341_02980 PF00268 Ribonucleotide reductase, small chain LA341_02985 PF03477 ATP cone domain LA341_02985 PF02867 Ribonucleotide reductase, barrel domain LA341_02985 PF00317 Ribonucleotide reductase, all-alpha domain LA341_02990 PF13419 Haloacid dehalogenase-like hydrolase LA341_03000 PF03989 DNA gyrase C-terminal domain, beta-propeller LA341_03000 PF00521 DNA gyrase/topoisomerase IV, subunit A LA341_03010 PF04055 Radical SAM superfamily LA341_03020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA341_03020 PF02824 TGS domain LA341_03020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LA341_03020 PF03129 Anticodon binding domain LA341_03025 PF05198 Translation initiation factor IF-3, N-terminal domain LA341_03025 PF00707 Translation initiation factor IF-3, C-terminal domain LA341_03030 PF01632 Ribosomal protein L35 LA341_03035 PF00453 Ribosomal protein L20 LA341_03040 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LA341_03040 PF01409 tRNA synthetases class II core domain (F) LA341_03045 PF03483 B3/4 domain LA341_03045 PF03484 tRNA synthetase B5 domain LA341_03045 PF03147 Ferredoxin-fold anticodon binding domain LA341_03045 PF01588 Putative tRNA binding domain LA341_03045 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LA341_03050 PF00216 Bacterial DNA-binding protein LA341_03055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_03055 PF00512 His Kinase A (phospho-acceptor) domain LA341_03055 PF09456 RcsC Alpha-Beta-Loop (ABL) LA341_03055 PF00072 Response regulator receiver domain LA341_03070 PF02146 Sir2 family LA341_03080 PF00563 EAL domain LA341_03080 PF00990 Diguanylate cyclase, GGDEF domain LA341_03080 PF03707 Bacterial signalling protein N terminal repeat LA341_03085 PF00356 Bacterial regulatory proteins, lacI family LA341_03090 PF00294 pfkB family carbohydrate kinase LA341_03095 PF13407 Periplasmic binding protein domain LA341_03100 PF02653 Branched-chain amino acid transport system / permease component LA341_03105 PF00005 ABC transporter LA341_03110 PF05025 RbsD / FucU transport protein family LA341_03115 PF08019 Phosphoethanolamine transferase EptA/EptB LA341_03115 PF00884 Sulfatase LA341_03120 PF13416 Bacterial extracellular solute-binding protein LA341_03125 PF00528 Binding-protein-dependent transport system inner membrane component LA341_03130 PF00528 Binding-protein-dependent transport system inner membrane component LA341_03135 PF00005 ABC transporter LA341_03135 PF08402 TOBE domain LA341_03150 PF01171 PP-loop family LA341_03155 PF00582 Universal stress protein family LA341_03160 PF13545 Crp-like helix-turn-helix domain LA341_03160 PF00027 Cyclic nucleotide-binding domain LA341_03175 PF00403 Heavy-metal-associated domain LA341_03185 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LA341_03185 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LA341_03200 PF00115 Cytochrome C and Quinol oxidase polypeptide I LA341_03210 PF13185 GAF domain LA341_03215 PF17516 ProQ C-terminal domain LA341_03215 PF04352 ProQ/FINO family LA341_03220 PF11818 C-terminal domain of tail specific protease (DUF3340) LA341_03220 PF00595 PDZ domain LA341_03220 PF03572 Peptidase family S41 LA341_03220 PF17804 Tail specific protease N-terminal domain LA341_03225 PF01433 Peptidase family M1 domain LA341_03225 PF11940 Domain of unknown function (DUF3458) Ig-like fold LA341_03225 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LA341_03235 PF05088 Bacterial NAD-glutamate dehydrogenase LA341_03240 PF01180 Dihydroorotate dehydrogenase LA341_03245 PF07126 Cell-division protein ZapC LA341_03250 PF01590 GAF domain LA341_03250 PF00990 Diguanylate cyclase, GGDEF domain LA341_03250 PF00360 Phytochrome region LA341_03250 PF00563 EAL domain LA341_03255 PF01339 CheB methylesterase LA341_03255 PF00072 Response regulator receiver domain LA341_03260 PF03705 CheR methyltransferase, all-alpha domain LA341_03260 PF01739 CheR methyltransferase, SAM binding domain LA341_03265 PF01584 CheW-like domain LA341_03270 PF17202 Single cache domain 3 LA341_03270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_03270 PF00672 HAMP domain LA341_03275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_03275 PF09078 CheY binding LA341_03275 PF01584 CheW-like domain LA341_03275 PF01627 Hpt domain LA341_03275 PF02895 Signal transducing histidine kinase, homodimeric domain LA341_03285 PF00072 Response regulator receiver domain LA341_03290 PF01197 Ribosomal protein L31 LA341_03295 PF00444 Ribosomal protein L36 LA341_03300 PF10672 S-adenosylmethionine-dependent methyltransferase LA341_03300 PF02926 THUMP domain LA341_03300 PF01170 Putative RNA methylase family UPF0020 LA341_03310 PF00005 ABC transporter LA341_03310 PF16326 ABC transporter C-terminal domain LA341_03310 PF12848 ABC transporter LA341_03315 PF04957 Ribosome modulation factor LA341_03320 PF07977 FabA-like domain LA341_03325 PF13654 AAA domain LA341_03325 PF05362 Lon protease (S16) C-terminal proteolytic domain LA341_03345 PF07130 YebG protein LA341_03355 PF00106 short chain dehydrogenase LA341_03380 PF06974 Protein of unknown function (DUF1298) LA341_03380 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LA341_03395 PF03972 MmgE/PrpD family LA341_03400 PF00285 Citrate synthase, C-terminal domain LA341_03415 PF04403 Paraquat-inducible protein A LA341_03420 PF02470 MlaD protein LA341_03425 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LA341_03425 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LA341_03425 PF01189 16S rRNA methyltransferase RsmB/F LA341_03435 PF00589 Phage integrase family LA341_03440 PF01026 TatD related DNase LA341_03445 PF09115 DNA polymerase III, delta subunit, C terminal LA341_03450 PF02223 Thymidylate kinase LA341_03455 PF02618 YceG-like family LA341_03460 PF01063 Amino-transferase class IV LA341_03465 PF00109 Beta-ketoacyl synthase, N-terminal domain LA341_03465 PF02801 Beta-ketoacyl synthase, C-terminal domain LA341_03470 PF00550 Phosphopantetheine attachment site LA341_03480 PF00698 Acyl transferase domain LA341_03485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA341_03485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA341_03490 PF02504 Fatty acid synthesis protein LA341_03495 PF01783 Ribosomal L32p protein family LA341_03500 PF02620 Large ribosomal RNA subunit accumulation protein YceD LA341_03505 PF02545 Maf-like protein LA341_03510 PF00849 RNA pseudouridylate synthase LA341_03510 PF01479 S4 domain LA341_03515 PF00575 S1 RNA binding domain LA341_03515 PF12111 Polyribonucleotide phosphorylase C terminal LA341_03515 PF10150 Ribonuclease E/G family LA341_03520 PF01384 Phosphate transporter family LA341_03525 PF00692 dUTPase LA341_03530 PF00485 Phosphoribulokinase / Uridine kinase family LA341_03535 PF10609 NUBPL iron-transfer P-loop NTPase LA341_03540 PF08264 Anticodon-binding domain of tRNA LA341_03540 PF09334 tRNA synthetases class I (M) LA341_03540 PF01588 Putative tRNA binding domain LA341_03545 PF02798 Glutathione S-transferase, N-terminal domain LA341_03545 PF00043 Glutathione S-transferase, C-terminal domain LA341_03550 PF00708 Acylphosphatase LA341_03555 PF00672 HAMP domain LA341_03555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_03555 PF17200 Single Cache domain 2 LA341_03560 PF10672 S-adenosylmethionine-dependent methyltransferase LA341_03560 PF17785 PUA-like domain LA341_03575 PF00586 AIR synthase related protein, N-terminal domain LA341_03575 PF02769 AIR synthase related protein, C-terminal domain LA341_03585 PF00753 Metallo-beta-lactamase superfamily LA341_03590 PF01612 3'-5' exonuclease LA341_03590 PF00570 HRDC domain LA341_03595 PF13193 AMP-binding enzyme C-terminal domain LA341_03595 PF00501 AMP-binding enzyme LA341_03600 PF12697 Alpha/beta hydrolase family LA341_03610 PF00814 Glycoprotease family LA341_03615 PF13307 Helicase C-terminal domain LA341_03615 PF04851 Type III restriction enzyme, res subunit LA341_03625 PF08029 HisG, C-terminal domain LA341_03625 PF01634 ATP phosphoribosyltransferase LA341_03630 PF00815 Histidinol dehydrogenase LA341_03635 PF00155 Aminotransferase class I and II LA341_03640 PF08645 Polynucleotide kinase 3 phosphatase LA341_03640 PF00475 Imidazoleglycerol-phosphate dehydratase LA341_03645 PF00117 Glutamine amidotransferase class-I LA341_03650 PF00977 Histidine biosynthesis protein LA341_03655 PF00977 Histidine biosynthesis protein LA341_03660 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LA341_03660 PF01502 Phosphoribosyl-AMP cyclohydrolase LA341_03675 PF00425 chorismate binding enzyme LA341_03675 PF04715 Anthranilate synthase component I, N terminal region LA341_03680 PF00293 NUDIX domain LA341_03685 PF03222 Tryptophan/tyrosine permease family LA341_03690 PF00375 Sodium:dicarboxylate symporter family LA341_03695 PF16124 RecQ zinc-binding LA341_03695 PF09382 RQC domain LA341_03695 PF00271 Helicase conserved C-terminal domain LA341_03695 PF00270 DEAD/DEAH box helicase LA341_03695 PF00570 HRDC domain LA341_03700 PF08298 PrkA AAA domain LA341_03700 PF06798 PrkA serine protein kinase C-terminal domain LA341_03705 PF04285 Protein of unknown function (DUF444) LA341_03710 PF04293 SpoVR like protein LA341_03715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LA341_03715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LA341_03715 PF00378 Enoyl-CoA hydratase/isomerase LA341_03720 PF02803 Thiolase, C-terminal domain LA341_03720 PF00108 Thiolase, N-terminal domain LA341_03725 PF17863 AAA lid domain LA341_03725 PF07726 ATPase family associated with various cellular activities (AAA) LA341_03730 PF01882 Protein of unknown function DUF58 LA341_03745 PF13519 von Willebrand factor type A domain LA341_03745 PF07584 Aerotolerance regulator N-terminal LA341_03755 PF04542 Sigma-70 region 2 LA341_03755 PF08281 Sigma-70, region 4 LA341_03765 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LA341_03770 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LA341_03775 PF00563 EAL domain LA341_03775 PF08668 HDOD domain LA341_03780 PF02803 Thiolase, C-terminal domain LA341_03780 PF00108 Thiolase, N-terminal domain LA341_03785 PF00376 MerR family regulatory protein LA341_03785 PF09278 MerR, DNA binding LA341_03790 PF01386 Ribosomal L25p family LA341_03800 PF11898 Domain of unknown function (DUF3418) LA341_03800 PF04408 Helicase associated domain (HA2) LA341_03800 PF00271 Helicase conserved C-terminal domain LA341_03800 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LA341_03800 PF00270 DEAD/DEAH box helicase LA341_03805 PF01368 DHH family LA341_03805 PF01743 Poly A polymerase head domain LA341_03805 PF02272 DHHA1 domain LA341_03805 PF00571 CBS domain LA341_03810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_03810 PF03466 LysR substrate binding domain LA341_03815 PF00155 Aminotransferase class I and II LA341_03820 PF00795 Carbon-nitrogen hydrolase LA341_03825 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_03965 PF00816 H-NS histone family LA341_03970 PF00717 Peptidase S24-like LA341_03975 PF11799 impB/mucB/samB family C-terminal domain LA341_03975 PF13438 Domain of unknown function (DUF4113) LA341_03975 PF00817 impB/mucB/samB family LA341_04010 PF03009 Glycerophosphoryl diester phosphodiesterase family LA341_04020 PF07690 Major Facilitator Superfamily LA341_04040 PF01032 FecCD transport family LA341_04050 PF00005 ABC transporter LA341_04130 PF06630 Enterobacterial exodeoxyribonuclease VIII LA341_04130 PF12684 PDDEXK-like domain of unknown function (DUF3799) LA341_04145 PF13356 Arm DNA-binding domain LA341_04145 PF14659 Phage integrase, N-terminal SAM-like domain LA341_04145 PF00589 Phage integrase family LA341_04150 PF08411 Exonuclease C-terminal LA341_04150 PF00929 Exonuclease LA341_04165 PF03788 LrgA family LA341_04170 PF04172 LrgB-like family LA341_04175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LA341_04175 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LA341_04180 PF01266 FAD dependent oxidoreductase LA341_04185 PF01118 Semialdehyde dehydrogenase, NAD binding domain LA341_04185 PF02774 Semialdehyde dehydrogenase, dimerisation domain LA341_04190 PF02634 FdhD/NarQ family LA341_04195 PF02954 Bacterial regulatory protein, Fis family LA341_04195 PF01590 GAF domain LA341_04195 PF00158 Sigma-54 interaction domain LA341_04210 PF13247 4Fe-4S dicluster domain LA341_04210 PF12800 4Fe-4S binding domain LA341_04225 PF00037 4Fe-4S binding domain LA341_04225 PF12798 4Fe-4S binding domain LA341_04230 PF00361 Proton-conducting membrane transporter LA341_04235 PF00146 NADH dehydrogenase LA341_04240 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LA341_04240 PF00374 Nickel-dependent hydrogenase LA341_04240 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LA341_04245 PF12838 4Fe-4S dicluster domain LA341_04250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LA341_04255 PF07450 Formate hydrogenlyase maturation protein HycH LA341_04260 PF01750 Hydrogenase maturation protease LA341_04270 PF12390 Selenocysteine synthase N terminal LA341_04270 PF03841 L-seryl-tRNA selenium transferase LA341_04275 PF09106 Elongation factor SelB, winged helix LA341_04275 PF09107 Elongation factor SelB, winged helix LA341_04275 PF00009 Elongation factor Tu GTP binding domain LA341_04275 PF03144 Elongation factor Tu domain 2 LA341_04275 PF09105 Elongation factor SelB, winged helix LA341_04280 PF00708 Acylphosphatase LA341_04280 PF17788 HypF Kae1-like domain LA341_04280 PF01300 Telomere recombination LA341_04280 PF07503 HypF finger LA341_04285 PF01455 HupF/HypC family LA341_04290 PF01924 Hydrogenase formation hypA family LA341_04295 PF02769 AIR synthase related protein, C-terminal domain LA341_04295 PF00586 AIR synthase related protein, N-terminal domain LA341_04300 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LA341_04310 PF02492 CobW/HypB/UreG, nucleotide-binding domain LA341_04315 PF00005 ABC transporter LA341_04315 PF17850 CysA C-terminal regulatory domain LA341_04315 PF12857 TOBE-like domain LA341_04320 PF00005 ABC transporter LA341_04325 PF00528 Binding-protein-dependent transport system inner membrane component LA341_04325 PF12911 N-terminal TM domain of oligopeptide transport permease C LA341_04330 PF00528 Binding-protein-dependent transport system inner membrane component LA341_04335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_04340 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE LA341_04345 PF01750 Hydrogenase maturation protease LA341_04350 PF00374 Nickel-dependent hydrogenase LA341_04355 PF03916 Polysulphide reductase, NrfD LA341_04360 PF13247 4Fe-4S dicluster domain LA341_04365 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LA341_04365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LA341_04370 PF00862 Sucrose synthase LA341_04370 PF00534 Glycosyl transferases group 1 LA341_04375 PF00534 Glycosyl transferases group 1 LA341_04445 PF00534 Glycosyl transferases group 1 LA341_04445 PF13439 Glycosyltransferase Family 4 LA341_04455 PF02397 Bacterial sugar transferase LA341_04460 PF00534 Glycosyl transferases group 1 LA341_04465 PF00072 Response regulator receiver domain LA341_04465 PF00211 Adenylate and Guanylate cyclase catalytic domain LA341_04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_04495 PF00512 His Kinase A (phospho-acceptor) domain LA341_04495 PF09308 LuxQ, periplasmic LA341_04495 PF00072 Response regulator receiver domain LA341_04500 PF12706 Beta-lactamase superfamily domain LA341_04505 PF00248 Aldo/keto reductase family LA341_04510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_04510 PF03466 LysR substrate binding domain LA341_04515 PF07715 TonB-dependent Receptor Plug Domain LA341_04515 PF00593 TonB dependent receptor LA341_04525 PF01925 Sulfite exporter TauE/SafE LA341_04530 PF13520 Amino acid permease LA341_04540 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LA341_04540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LA341_04545 PF00378 Enoyl-CoA hydratase/isomerase LA341_04550 PF00378 Enoyl-CoA hydratase/isomerase LA341_04555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA341_04555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA341_04555 PF02770 Acyl-CoA dehydrogenase, middle domain LA341_04560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA341_04560 PF02770 Acyl-CoA dehydrogenase, middle domain LA341_04560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA341_04565 PF01039 Carboxyl transferase domain LA341_04570 PF00378 Enoyl-CoA hydratase/isomerase LA341_04575 PF00289 Biotin carboxylase, N-terminal domain LA341_04575 PF02785 Biotin carboxylase C-terminal domain LA341_04575 PF00364 Biotin-requiring enzyme LA341_04575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA341_04580 PF00682 HMGL-like LA341_04585 PF09278 MerR, DNA binding LA341_04585 PF00376 MerR family regulatory protein LA341_04600 PF01184 GPR1/FUN34/yaaH family LA341_04605 PF06167 Glucose-regulated metallo-peptidase M90 LA341_04620 PF00378 Enoyl-CoA hydratase/isomerase LA341_04635 PF04341 Protein of unknown function, DUF485 LA341_04640 PF00474 Sodium:solute symporter family LA341_04645 PF00704 Glycosyl hydrolases family 18 LA341_04650 PF00005 ABC transporter LA341_04650 PF12848 ABC transporter LA341_04655 PF13145 PPIC-type PPIASE domain LA341_04660 PF00216 Bacterial DNA-binding protein LA341_04665 PF00004 ATPase family associated with various cellular activities (AAA) LA341_04665 PF05362 Lon protease (S16) C-terminal proteolytic domain LA341_04665 PF02190 ATP-dependent protease La (LON) substrate-binding domain LA341_04670 PF07724 AAA domain (Cdc48 subfamily) LA341_04670 PF10431 C-terminal, D2-small domain, of ClpB protein LA341_04670 PF06689 ClpX C4-type zinc finger LA341_04675 PF00574 Clp protease LA341_04680 PF05698 Bacterial trigger factor protein (TF) C-terminus LA341_04680 PF05697 Bacterial trigger factor protein (TF) LA341_04680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA341_04695 PF02687 FtsX-like permease family LA341_04695 PF12704 MacB-like periplasmic core domain LA341_04700 PF00005 ABC transporter LA341_04705 PF02687 FtsX-like permease family LA341_04705 PF12704 MacB-like periplasmic core domain LA341_04715 PF00270 DEAD/DEAH box helicase LA341_04715 PF17757 UvrB interaction domain LA341_04715 PF00271 Helicase conserved C-terminal domain LA341_04715 PF03461 TRCF domain LA341_04715 PF02559 CarD-like/TRCF domain LA341_04720 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LA341_04725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_04730 PF00892 EamA-like transporter family LA341_04740 PF00300 Histidine phosphatase superfamily (branch 1) LA341_04745 PF00675 Insulinase (Peptidase family M16) LA341_04745 PF05193 Peptidase M16 inactive domain LA341_04745 PF16187 Middle or third domain of peptidase_M16 LA341_04750 PF05724 Thiopurine S-methyltransferase (TPMT) LA341_04765 PF02805 Metal binding domain of Ada LA341_04765 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LA341_04765 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LA341_04765 PF12833 Helix-turn-helix domain LA341_04785 PF00117 Glutamine amidotransferase class-I LA341_04785 PF00958 GMP synthase C terminal domain LA341_04785 PF02540 NAD synthase LA341_04790 PF00571 CBS domain LA341_04790 PF00478 IMP dehydrogenase / GMP reductase domain LA341_04795 PF00563 EAL domain LA341_04795 PF12792 CSS motif domain associated with EAL LA341_04800 PF02601 Exonuclease VII, large subunit LA341_04800 PF13742 OB-fold nucleic acid binding domain LA341_04805 PF07478 D-ala D-ala ligase C-terminus LA341_04805 PF01820 D-ala D-ala ligase N-terminus LA341_04815 PF00255 Glutathione peroxidase LA341_04820 PF00270 DEAD/DEAH box helicase LA341_04820 PF00271 Helicase conserved C-terminal domain LA341_04825 PF04055 Radical SAM superfamily LA341_04830 PF00672 HAMP domain LA341_04830 PF02743 Cache domain LA341_04830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_04835 PF00793 DAHP synthetase I family LA341_04840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LA341_04845 PF00266 Aminotransferase class-V LA341_04850 PF01012 Electron transfer flavoprotein domain LA341_04850 PF00766 Electron transfer flavoprotein FAD-binding domain LA341_04855 PF01012 Electron transfer flavoprotein domain LA341_04870 PF01544 CorA-like Mg2+ transporter protein LA341_04875 PF11143 Protein of unknown function (DUF2919) LA341_04885 PF07273 Protein of unknown function (DUF1439) LA341_04895 PF00483 Nucleotidyl transferase LA341_04900 PF00990 Diguanylate cyclase, GGDEF domain LA341_04900 PF03707 Bacterial signalling protein N terminal repeat LA341_04900 PF00563 EAL domain LA341_04915 PF17200 Single Cache domain 2 LA341_04915 PF00672 HAMP domain LA341_04915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_04920 PF00294 pfkB family carbohydrate kinase LA341_04930 PF00762 Ferrochelatase LA341_04935 PF05191 Adenylate kinase, active site lid LA341_04940 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LA341_04945 PF00156 Phosphoribosyl transferase domain LA341_04950 PF02674 Colicin V production protein LA341_04955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA341_04955 PF02403 Seryl-tRNA synthetase N-terminal domain LA341_04960 PF16193 AAA C-terminal domain LA341_04960 PF12002 MgsA AAA+ ATPase C terminal LA341_04960 PF00004 ATPase family associated with various cellular activities (AAA) LA341_04965 PF03548 Outer membrane lipoprotein carrier protein LolA LA341_04970 PF17854 FtsK alpha domain LA341_04970 PF01580 FtsK/SpoIIIE family LA341_04970 PF09397 Ftsk gamma domain LA341_04970 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LA341_04975 PF01037 Lrp/AsnC ligand binding domain LA341_04980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LA341_04980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LA341_04985 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_04990 PF00990 Diguanylate cyclase, GGDEF domain LA341_04995 PF05433 Glycine zipper 2TM domain LA341_05000 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LA341_05005 PF04376 Arginine-tRNA-protein transferase, N terminus LA341_05005 PF04377 Arginine-tRNA-protein transferase, C terminus LA341_05010 PF01176 Translation initiation factor 1A / IF-1 LA341_05015 PF10431 C-terminal, D2-small domain, of ClpB protein LA341_05015 PF02861 Clp amino terminal domain, pathogenicity island component LA341_05015 PF17871 AAA lid domain LA341_05015 PF07724 AAA domain (Cdc48 subfamily) LA341_05015 PF00004 ATPase family associated with various cellular activities (AAA) LA341_05020 PF02617 ATP-dependent Clp protease adaptor protein ClpS LA341_05025 PF00313 'Cold-shock' DNA-binding domain LA341_05030 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LA341_05030 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LA341_05050 PF01053 Cys/Met metabolism PLP-dependent enzyme LA341_05055 PF00501 AMP-binding enzyme LA341_05060 PF08891 YfcL protein LA341_05070 PF03741 Integral membrane protein TerC family LA341_05075 PF00691 OmpA family LA341_05080 PF00990 Diguanylate cyclase, GGDEF domain LA341_05080 PF17152 Periplasmic sensor domain LA341_05090 PF18024 Helix-turn-helix domain LA341_05090 PF00158 Sigma-54 interaction domain LA341_05100 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LA341_05105 PF00171 Aldehyde dehydrogenase family LA341_05110 PF00528 Binding-protein-dependent transport system inner membrane component LA341_05115 PF00528 Binding-protein-dependent transport system inner membrane component LA341_05120 PF08402 TOBE domain LA341_05120 PF00005 ABC transporter LA341_05125 PF13416 Bacterial extracellular solute-binding protein LA341_05130 PF03466 LysR substrate binding domain LA341_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_05135 PF05128 Domain of unknown function (DUF697) LA341_05140 PF04317 YcjX-like family, DUF463 LA341_05150 PF06667 Phage shock protein B LA341_05155 PF04012 PspA/IM30 family LA341_05160 PF00158 Sigma-54 interaction domain LA341_05160 PF02954 Bacterial regulatory protein, Fis family LA341_05165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_05170 PF00528 Binding-protein-dependent transport system inner membrane component LA341_05175 PF00528 Binding-protein-dependent transport system inner membrane component LA341_05175 PF12911 N-terminal TM domain of oligopeptide transport permease C LA341_05180 PF00005 ABC transporter LA341_05180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA341_05185 PF00005 ABC transporter LA341_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_05190 PF00183 Hsp90 protein LA341_05195 PF02132 RecR protein LA341_05195 PF13662 Toprim domain LA341_05200 PF01168 Alanine racemase, N-terminal domain LA341_05200 PF00842 Alanine racemase, C-terminal domain LA341_05250 PF00589 Phage integrase family LA341_05250 PF13495 Phage integrase, N-terminal SAM-like domain LA341_05265 PF10722 Putative bacterial sensory transduction regulator LA341_05275 PF00265 Thymidine kinase LA341_05280 PF03553 Na+/H+ antiporter family LA341_05285 PF00816 H-NS histone family LA341_05290 PF01923 Cobalamin adenosyltransferase LA341_05295 PF12843 Putative quorum-sensing-regulated virulence factor LA341_05300 PF04055 Radical SAM superfamily LA341_05305 PF06508 Queuosine biosynthesis protein QueC LA341_05320 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LA341_05325 PF18073 Rubredoxin metal binding domain LA341_05335 PF00216 Bacterial DNA-binding protein LA341_05340 PF00575 S1 RNA binding domain LA341_05345 PF02224 Cytidylate kinase LA341_05350 PF00925 GTP cyclohydrolase II LA341_05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_05355 PF03466 LysR substrate binding domain LA341_05360 PF07690 Major Facilitator Superfamily LA341_05370 PF01740 STAS domain LA341_05370 PF00916 Sulfate permease family LA341_05395 PF13737 Transposase DDE domain LA341_05420 PF14497 Glutathione S-transferase, C-terminal domain LA341_05420 PF02798 Glutathione S-transferase, N-terminal domain LA341_05430 PF04209 homogentisate 1,2-dioxygenase LA341_05435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA341_05445 PF00849 RNA pseudouridylate synthase LA341_05450 PF00528 Binding-protein-dependent transport system inner membrane component LA341_05455 PF00528 Binding-protein-dependent transport system inner membrane component LA341_05460 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_05465 PF00005 ABC transporter LA341_05470 PF03956 Lysine exporter LysO LA341_05475 PF04336 Acyl carrier protein phosphodiesterase LA341_05485 PF03960 ArsC family LA341_05495 PF01435 Peptidase family M48 LA341_05495 PF13181 Tetratricopeptide repeat LA341_05500 PF01206 Sulfurtransferase TusA LA341_05505 PF01594 AI-2E family transporter LA341_05515 PF00561 alpha/beta hydrolase fold LA341_05520 PF03976 Polyphosphate kinase 2 (PPK2) LA341_05530 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_05535 PF00155 Aminotransferase class I and II LA341_05540 PF08402 TOBE domain LA341_05540 PF00005 ABC transporter LA341_05545 PF00528 Binding-protein-dependent transport system inner membrane component LA341_05550 PF14785 Maltose transport system permease protein MalF P2 domain LA341_05550 PF00528 Binding-protein-dependent transport system inner membrane component LA341_05555 PF01547 Bacterial extracellular solute-binding protein LA341_05560 PF04245 37-kD nucleoid-associated bacterial protein LA341_05565 PF07208 Protein of unknown function (DUF1414) LA341_05570 PF00884 Sulfatase LA341_05570 PF11893 Domain of unknown function (DUF3413) LA341_05575 PF03180 NLPA lipoprotein LA341_05590 PF01483 Proprotein convertase P-domain LA341_05590 PF00082 Subtilase family LA341_05600 PF00391 PEP-utilising enzyme, mobile domain LA341_05600 PF02896 PEP-utilising enzyme, TIM barrel domain LA341_05600 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LA341_05605 PF03618 Kinase/pyrophosphorylase LA341_05615 PF00324 Amino acid permease LA341_05620 PF07690 Major Facilitator Superfamily LA341_05625 PF00512 His Kinase A (phospho-acceptor) domain LA341_05625 PF00989 PAS fold LA341_05625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_05635 PF08241 Methyltransferase domain LA341_05640 PF00884 Sulfatase LA341_05645 PF04055 Radical SAM superfamily LA341_05645 PF13186 Iron-sulfur cluster-binding domain LA341_05650 PF00672 HAMP domain LA341_05650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_05655 PF02347 Glycine cleavage system P-protein LA341_05660 PF01597 Glycine cleavage H-protein LA341_05665 PF01571 Aminomethyltransferase folate-binding domain LA341_05665 PF08669 Glycine cleavage T-protein C-terminal barrel domain LA341_05670 PF01494 FAD binding domain LA341_05675 PF01494 FAD binding domain LA341_05680 PF03695 Uncharacterised protein family (UPF0149) LA341_05685 PF05164 Cell division protein ZapA LA341_05695 PF08521 Two-component sensor kinase N-terminal LA341_05695 PF00512 His Kinase A (phospho-acceptor) domain LA341_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_05700 PF00486 Transcriptional regulatory protein, C terminal LA341_05700 PF00072 Response regulator receiver domain LA341_05715 PF01970 Tripartite tricarboxylate transporter TctA family LA341_05720 PF07719 Tetratricopeptide repeat LA341_05720 PF13181 Tetratricopeptide repeat LA341_05730 PF02355 Protein export membrane protein LA341_05730 PF07549 SecD/SecF GG Motif LA341_05735 PF07549 SecD/SecF GG Motif LA341_05735 PF02355 Protein export membrane protein LA341_05735 PF13721 SecD export protein N-terminal TM region LA341_05740 PF02699 Preprotein translocase subunit LA341_05745 PF01702 Queuine tRNA-ribosyltransferase LA341_05750 PF02547 Queuosine biosynthesis protein LA341_05755 PF00571 CBS domain LA341_05760 PF10417 C-terminal domain of 1-Cys peroxiredoxin LA341_05760 PF00578 AhpC/TSA family LA341_05765 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_05765 PF13192 Thioredoxin domain LA341_05815 PF03412 Peptidase C39 family LA341_05815 PF00005 ABC transporter LA341_05815 PF00664 ABC transporter transmembrane region LA341_05820 PF16199 Radical_SAM C-terminal domain LA341_05820 PF04055 Radical SAM superfamily LA341_05825 PF04898 Glutamate synthase central domain LA341_05825 PF00310 Glutamine amidotransferases class-II LA341_05825 PF01645 Conserved region in glutamate synthase LA341_05825 PF01493 GXGXG motif LA341_05830 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LA341_05830 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_05835 PF00271 Helicase conserved C-terminal domain LA341_05835 PF00270 DEAD/DEAH box helicase LA341_05850 PF07670 Nucleoside recognition LA341_05850 PF17910 FeoB cytosolic helical domain LA341_05850 PF07664 Ferrous iron transport protein B C terminus LA341_05850 PF02421 Ferrous iron transport protein B LA341_05860 PF01253 Translation initiation factor SUI1 LA341_05865 PF01169 Uncharacterized protein family UPF0016 LA341_05910 PF01406 tRNA synthetases class I (C) catalytic domain LA341_05910 PF09190 DALR domain LA341_05915 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LA341_05925 PF00149 Calcineurin-like phosphoesterase LA341_05930 PF07690 Major Facilitator Superfamily LA341_05935 PF00043 Glutathione S-transferase, C-terminal domain LA341_05935 PF02798 Glutathione S-transferase, N-terminal domain LA341_05945 PF00459 Inositol monophosphatase family LA341_05950 PF00672 HAMP domain LA341_05950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_05955 PF02535 ZIP Zinc transporter LA341_05960 PF01048 Phosphorylase superfamily LA341_05970 PF01497 Periplasmic binding protein LA341_05975 PF02719 Polysaccharide biosynthesis protein LA341_05980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LA341_05985 PF13737 Transposase DDE domain LA341_05995 PF00501 AMP-binding enzyme LA341_05995 PF13193 AMP-binding enzyme C-terminal domain LA341_06010 PF04989 Cephalosporin hydroxylase LA341_06020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LA341_06025 PF08484 C-methyltransferase C-terminal domain LA341_06025 PF08421 Putative zinc binding domain LA341_06030 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LA341_06035 PF16363 GDP-mannose 4,6 dehydratase LA341_06040 PF00483 Nucleotidyl transferase LA341_06045 PF00535 Glycosyl transferase family 2 LA341_06070 PF03275 UDP-galactopyranose mutase LA341_06075 PF00535 Glycosyl transferase family 2 LA341_06090 PF13193 AMP-binding enzyme C-terminal domain LA341_06090 PF00501 AMP-binding enzyme LA341_06110 PF02348 Cytidylyltransferase LA341_06120 PF03102 NeuB family LA341_06120 PF08666 SAF domain LA341_06145 PF02561 Flagellar protein FliS LA341_06150 PF07196 Flagellin hook IN motif LA341_06150 PF07195 Flagellar hook-associated protein 2 C-terminus LA341_06150 PF02465 Flagellar hook-associated protein 2 N-terminus LA341_06155 PF03646 FlaG protein LA341_06160 PF00669 Bacterial flagellin N-terminal helical region LA341_06160 PF00700 Bacterial flagellin C-terminal helical region LA341_06160 PF00700 Bacterial flagellin C-terminal helical region LA341_06160 PF00669 Bacterial flagellin N-terminal helical region LA341_06165 PF00669 Bacterial flagellin N-terminal helical region LA341_06165 PF00700 Bacterial flagellin C-terminal helical region LA341_06170 PF03458 UPF0126 domain LA341_06180 PF02568 Thiamine biosynthesis protein (ThiI) LA341_06180 PF02926 THUMP domain LA341_06190 PF00905 Penicillin binding protein transpeptidase domain LA341_06190 PF06832 Penicillin-Binding Protein C-terminus Family LA341_06190 PF00912 Transglycosylase LA341_06195 PF07678 A-macroglobulin TED domain LA341_06195 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LA341_06195 PF17962 Bacterial macroglobulin domain 6 LA341_06195 PF00207 Alpha-2-macroglobulin family LA341_06195 PF07703 Alpha-2-macroglobulin bait region domain LA341_06195 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LA341_06195 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LA341_06195 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LA341_06195 PF01835 MG2 domain LA341_06205 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_06205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA341_06210 PF00563 EAL domain LA341_06210 PF00990 Diguanylate cyclase, GGDEF domain LA341_06210 PF03707 Bacterial signalling protein N terminal repeat LA341_06215 PF04055 Radical SAM superfamily LA341_06235 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_06240 PF05728 Uncharacterised protein family (UPF0227) LA341_06245 PF00860 Permease family LA341_06250 PF01432 Peptidase family M3 LA341_06250 PF08439 Oligopeptidase F LA341_06255 PF05661 Protein of unknown function (DUF808) LA341_06265 PF03358 NADPH-dependent FMN reductase LA341_06270 PF01638 HxlR-like helix-turn-helix LA341_06275 PF00375 Sodium:dicarboxylate symporter family LA341_06290 PF01979 Amidohydrolase family LA341_06300 PF01810 LysE type translocator LA341_06305 PF00672 HAMP domain LA341_06305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_06310 PF01230 HIT domain LA341_06345 PF02355 Protein export membrane protein LA341_06345 PF13721 SecD export protein N-terminal TM region LA341_06345 PF07549 SecD/SecF GG Motif LA341_06350 PF02355 Protein export membrane protein LA341_06350 PF07549 SecD/SecF GG Motif LA341_06355 PF00483 Nucleotidyl transferase LA341_06360 PF00793 DAHP synthetase I family LA341_06365 PF01817 Chorismate mutase type II LA341_06365 PF02153 Prephenate dehydrogenase LA341_06375 PF06733 DEAD_2 LA341_06375 PF13307 Helicase C-terminal domain LA341_06385 PF00850 Histone deacetylase domain LA341_06390 PF07690 Major Facilitator Superfamily LA341_06395 PF01926 50S ribosome-binding GTPase LA341_06400 PF00245 Alkaline phosphatase LA341_06405 PF00245 Alkaline phosphatase LA341_06420 PF01272 Transcription elongation factor, GreA/GreB, C-term LA341_06420 PF14760 Rnk N-terminus LA341_06425 PF00196 Bacterial regulatory proteins, luxR family LA341_06425 PF00072 Response regulator receiver domain LA341_06430 PF05231 MASE1 LA341_06430 PF07730 Histidine kinase LA341_06430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_06435 PF07690 Major Facilitator Superfamily LA341_06440 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_06445 PF00528 Binding-protein-dependent transport system inner membrane component LA341_06450 PF00005 ABC transporter LA341_06460 PF04116 Fatty acid hydroxylase superfamily LA341_06470 PF00571 CBS domain LA341_06470 PF03471 Transporter associated domain LA341_06470 PF01595 Cyclin M transmembrane N-terminal domain LA341_06475 PF01895 PhoU domain LA341_06480 PF00005 ABC transporter LA341_06485 PF00528 Binding-protein-dependent transport system inner membrane component LA341_06490 PF00528 Binding-protein-dependent transport system inner membrane component LA341_06495 PF14437 MafB19-like deaminase LA341_06510 PF01274 Malate synthase LA341_06515 PF00463 Isocitrate lyase family LA341_06520 PF00308 Bacterial dnaA protein LA341_06535 PF00586 AIR synthase related protein, N-terminal domain LA341_06535 PF02769 AIR synthase related protein, C-terminal domain LA341_06540 PF00551 Formyl transferase LA341_06545 PF01784 NIF3 (NGG1p interacting factor 3) LA341_06550 PF00072 Response regulator receiver domain LA341_06550 PF02954 Bacterial regulatory protein, Fis family LA341_06550 PF00158 Sigma-54 interaction domain LA341_06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_06555 PF00512 His Kinase A (phospho-acceptor) domain LA341_06555 PF13188 PAS domain LA341_06560 PF06490 Flagellar regulatory protein FleQ LA341_06560 PF02954 Bacterial regulatory protein, Fis family LA341_06560 PF00158 Sigma-54 interaction domain LA341_06570 PF01842 ACT domain LA341_06575 PF13089 Polyphosphate kinase N-terminal domain LA341_06575 PF17941 Polyphosphate kinase C-terminal domain 1 LA341_06575 PF02503 Polyphosphate kinase middle domain LA341_06575 PF13090 Polyphosphate kinase C-terminal domain 2 LA341_06580 PF02541 Ppx/GppA phosphatase family LA341_06585 PF00571 CBS domain LA341_06585 PF01769 Divalent cation transporter LA341_06585 PF03448 MgtE intracellular N domain LA341_06590 PF00669 Bacterial flagellin N-terminal helical region LA341_06595 PF07196 Flagellin hook IN motif LA341_06595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_06600 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LA341_06600 PF10135 Rod binding protein LA341_06605 PF02119 Flagellar P-ring protein LA341_06610 PF02107 Flagellar L-ring protein LA341_06615 PF00460 Flagella basal body rod protein LA341_06615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_06620 PF00460 Flagella basal body rod protein LA341_06620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_06625 PF07559 Flagellar basal body protein FlaE LA341_06625 PF00460 Flagella basal body rod protein LA341_06625 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_06635 PF00460 Flagella basal body rod protein LA341_06635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_06640 PF00460 Flagella basal body rod protein LA341_06645 PF03705 CheR methyltransferase, all-alpha domain LA341_06645 PF01739 CheR methyltransferase, SAM binding domain LA341_06650 PF00072 Response regulator receiver domain LA341_06650 PF01584 CheW-like domain LA341_06655 PF13144 Chaperone for flagella basal body P-ring formation LA341_06670 PF12850 Calcineurin-like phosphoesterase superfamily domain LA341_06675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_06685 PF00849 RNA pseudouridylate synthase LA341_06685 PF01479 S4 domain LA341_06690 PF01966 HD domain LA341_06700 PF00923 Transaldolase/Fructose-6-phosphate aldolase LA341_06705 PF04055 Radical SAM superfamily LA341_06710 PF01228 Glycine radical LA341_06710 PF02901 Pyruvate formate lyase-like LA341_06715 PF08220 DeoR-like helix-turn-helix domain LA341_06715 PF00455 DeoR C terminal sensor domain LA341_06720 PF00892 EamA-like transporter family LA341_06725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_06750 PF00313 'Cold-shock' DNA-binding domain LA341_06755 PF02817 e3 binding domain LA341_06755 PF00364 Biotin-requiring enzyme LA341_06755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LA341_06760 PF02779 Transketolase, pyrimidine binding domain LA341_06760 PF02780 Transketolase, C-terminal domain LA341_06765 PF00676 Dehydrogenase E1 component LA341_06775 PF00668 Condensation domain LA341_06775 PF00501 AMP-binding enzyme LA341_06775 PF13193 AMP-binding enzyme C-terminal domain LA341_06775 PF00550 Phosphopantetheine attachment site LA341_06775 PF00975 Thioesterase domain LA341_06785 PF00550 Phosphopantetheine attachment site LA341_06785 PF00857 Isochorismatase family LA341_06790 PF00501 AMP-binding enzyme LA341_06790 PF13193 AMP-binding enzyme C-terminal domain LA341_06795 PF00425 chorismate binding enzyme LA341_06800 PF07715 TonB-dependent Receptor Plug Domain LA341_06800 PF00593 TonB dependent receptor LA341_06805 PF00793 DAHP synthetase I family LA341_06810 PF00356 Bacterial regulatory proteins, lacI family LA341_06815 PF14718 Soluble lytic murein transglycosylase L domain LA341_06815 PF01464 Transglycosylase SLT domain LA341_06820 PF00563 EAL domain LA341_06820 PF00990 Diguanylate cyclase, GGDEF domain LA341_06820 PF03707 Bacterial signalling protein N terminal repeat LA341_06825 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LA341_06845 PF04357 TamB, inner membrane protein subunit of TAM complex LA341_06850 PF01103 Surface antigen LA341_06850 PF07244 Surface antigen variable number repeat LA341_06850 PF17243 POTRA domain TamA domain 1 LA341_06865 PF03466 LysR substrate binding domain LA341_06865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_06880 PF02627 Carboxymuconolactone decarboxylase family LA341_06885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA341_06885 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_06885 PF00403 Heavy-metal-associated domain LA341_06890 PF13416 Bacterial extracellular solute-binding protein LA341_06895 PF00528 Binding-protein-dependent transport system inner membrane component LA341_06900 PF00005 ABC transporter LA341_06905 PF01066 CDP-alcohol phosphatidyltransferase LA341_06910 PF13406 Transglycosylase SLT domain LA341_06915 PF00578 AhpC/TSA family LA341_06925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LA341_06925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LA341_06925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LA341_06925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LA341_06930 PF17206 SeqA protein N-terminal domain LA341_06930 PF03925 SeqA protein C-terminal domain LA341_06935 PF12697 Alpha/beta hydrolase family LA341_06945 PF01402 Ribbon-helix-helix protein, copG family LA341_06950 PF00258 Flavodoxin LA341_06960 PF01475 Ferric uptake regulator family LA341_06965 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LA341_06965 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA341_06970 PF03173 Putative carbohydrate binding domain LA341_06970 PF00728 Glycosyl hydrolase family 20, catalytic domain LA341_06970 PF02838 Glycosyl hydrolase family 20, domain 2 LA341_06970 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LA341_06975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LA341_06975 PF02378 Phosphotransferase system, EIIC LA341_06975 PF00367 phosphotransferase system, EIIB LA341_06980 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LA341_06985 PF01979 Amidohydrolase family LA341_06990 PF01047 MarR family LA341_06990 PF00480 ROK family LA341_06995 PF08019 Phosphoethanolamine transferase EptA/EptB LA341_06995 PF00884 Sulfatase LA341_07000 PF01966 HD domain LA341_07000 PF11871 Domain of unknown function (DUF3391) LA341_07005 PF06580 Histidine kinase LA341_07005 PF07694 5TMR of 5TMR-LYT LA341_07010 PF00072 Response regulator receiver domain LA341_07010 PF04397 LytTr DNA-binding domain LA341_07015 PF02554 Carbon starvation protein CstA LA341_07020 PF11742 Protein of unknown function (DUF3302) LA341_07025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_07025 PF00529 HlyD membrane-fusion protein of T1SS LA341_07030 PF00271 Helicase conserved C-terminal domain LA341_07030 PF04851 Type III restriction enzyme, res subunit LA341_07035 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LA341_07040 PF00462 Glutaredoxin LA341_07045 PF03372 Endonuclease/Exonuclease/phosphatase family LA341_07055 PF03061 Thioesterase superfamily LA341_07060 PF01370 NAD dependent epimerase/dehydratase family LA341_07075 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LA341_07075 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LA341_07075 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LA341_07075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA341_07075 PF10371 Domain of unknown function LA341_07080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LA341_07080 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LA341_07080 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_07085 PF03476 MOSC N-terminal beta barrel domain LA341_07085 PF00111 2Fe-2S iron-sulfur cluster binding domain LA341_07085 PF03476 MOSC N-terminal beta barrel domain LA341_07085 PF03473 MOSC domain LA341_07085 PF00111 2Fe-2S iron-sulfur cluster binding domain LA341_07085 PF03473 MOSC domain LA341_07090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_07090 PF08447 PAS fold LA341_07090 PF13426 PAS domain LA341_07095 PF01435 Peptidase family M48 LA341_07105 PF12697 Alpha/beta hydrolase family LA341_07105 PF08241 Methyltransferase domain LA341_07110 PF00155 Aminotransferase class I and II LA341_07115 PF06968 Biotin and Thiamin Synthesis associated domain LA341_07115 PF04055 Radical SAM superfamily LA341_07120 PF00202 Aminotransferase class-III LA341_07135 PF01336 OB-fold nucleic acid binding domain LA341_07135 PF00152 tRNA synthetases class II (D, K and N) LA341_07140 PF03605 Anaerobic c4-dicarboxylate membrane transporter LA341_07150 PF07687 Peptidase dimerisation domain LA341_07150 PF01546 Peptidase family M20/M25/M40 LA341_07155 PF03606 C4-dicarboxylate anaerobic carrier LA341_07165 PF03960 ArsC family LA341_07170 PF01546 Peptidase family M20/M25/M40 LA341_07170 PF07687 Peptidase dimerisation domain LA341_07175 PF02557 D-alanyl-D-alanine carboxypeptidase LA341_07185 PF00990 Diguanylate cyclase, GGDEF domain LA341_07190 PF00999 Sodium/hydrogen exchanger family LA341_07190 PF02080 TrkA-C domain LA341_07190 PF03471 Transporter associated domain LA341_07200 PF03471 Transporter associated domain LA341_07200 PF00999 Sodium/hydrogen exchanger family LA341_07200 PF02080 TrkA-C domain LA341_07205 PF01810 LysE type translocator LA341_07210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_07210 PF12729 Four helix bundle sensory module for signal transduction LA341_07210 PF00672 HAMP domain LA341_07215 PF07509 Protein of unknown function (DUF1523) LA341_07230 PF01156 Inosine-uridine preferring nucleoside hydrolase LA341_07235 PF00849 RNA pseudouridylate synthase LA341_07240 PF01048 Phosphorylase superfamily LA341_07245 PF00465 Iron-containing alcohol dehydrogenase LA341_07250 PF04355 SmpA / OmlA family LA341_07255 PF13460 NAD(P)H-binding LA341_07265 PF10437 Bacterial lipoate protein ligase C-terminus LA341_07265 PF03099 Biotin/lipoate A/B protein ligase family LA341_07270 PF00563 EAL domain LA341_07270 PF00990 Diguanylate cyclase, GGDEF domain LA341_07270 PF03707 Bacterial signalling protein N terminal repeat LA341_07275 PF00873 AcrB/AcrD/AcrF family LA341_07290 PF04143 Sulphur transport LA341_07295 PF01022 Bacterial regulatory protein, arsR family LA341_07310 PF02308 MgtC family LA341_07315 PF00684 DnaJ central domain LA341_07315 PF01556 DnaJ C terminal domain LA341_07315 PF00226 DnaJ domain LA341_07320 PF00012 Hsp70 protein LA341_07325 PF01025 GrpE LA341_07330 PF01513 ATP-NAD kinase LA341_07335 PF03466 LysR substrate binding domain LA341_07335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_07340 PF11975 Family 4 glycosyl hydrolase C-terminal domain LA341_07340 PF02056 Family 4 glycosyl hydrolase LA341_07345 PF02463 RecF/RecN/SMC N terminal domain LA341_07350 PF01368 DHH family LA341_07350 PF02833 DHHA2 domain LA341_07355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_07360 PF00005 ABC transporter LA341_07360 PF02687 FtsX-like permease family LA341_07360 PF12704 MacB-like periplasmic core domain LA341_07365 PF02321 Outer membrane efflux protein LA341_07370 PF00816 H-NS histone family LA341_07390 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LA341_07415 PF04321 RmlD substrate binding domain LA341_07420 PF16363 GDP-mannose 4,6 dehydratase LA341_07425 PF02719 Polysaccharide biosynthesis protein LA341_07430 PF02397 Bacterial sugar transferase LA341_07450 PF01370 NAD dependent epimerase/dehydratase family LA341_07480 PF00005 ABC transporter LA341_07480 PF00664 ABC transporter transmembrane region LA341_07490 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LA341_07500 PF05523 WxcM-like, C-terminal LA341_07505 PF00483 Nucleotidyl transferase LA341_07515 PF16363 GDP-mannose 4,6 dehydratase LA341_07520 PF00873 AcrB/AcrD/AcrF family LA341_07525 PF00529 HlyD membrane-fusion protein of T1SS LA341_07525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_07530 PF00440 Bacterial regulatory proteins, tetR family LA341_07530 PF08361 MAATS-type transcriptional repressor, C-terminal region LA341_07545 PF02001 Protein of unknown function DUF134 LA341_07560 PF00072 Response regulator receiver domain LA341_07595 PF03707 Bacterial signalling protein N terminal repeat LA341_07595 PF00990 Diguanylate cyclase, GGDEF domain LA341_07595 PF00563 EAL domain LA341_07600 PF00990 Diguanylate cyclase, GGDEF domain LA341_07605 PF08859 DGC domain LA341_07625 PF02665 Nitrate reductase gamma subunit LA341_07630 PF02613 Nitrate reductase delta subunit LA341_07635 PF14711 Respiratory nitrate reductase beta C-terminal LA341_07635 PF13247 4Fe-4S dicluster domain LA341_07640 PF00384 Molybdopterin oxidoreductase LA341_07640 PF01568 Molydopterin dinucleotide binding domain LA341_07640 PF14710 Respiratory nitrate reductase alpha N-terminal LA341_07645 PF07690 Major Facilitator Superfamily LA341_07655 PF00196 Bacterial regulatory proteins, luxR family LA341_07655 PF00072 Response regulator receiver domain LA341_07670 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_07670 PF18113 Rubredoxin binding C-terminal domain LA341_07675 PF00258 Flavodoxin LA341_07675 PF00301 Rubredoxin LA341_07675 PF00753 Metallo-beta-lactamase superfamily LA341_07680 PF01590 GAF domain LA341_07680 PF00158 Sigma-54 interaction domain LA341_07685 PF00072 Response regulator receiver domain LA341_07685 PF00196 Bacterial regulatory proteins, luxR family LA341_07695 PF03601 Conserved hypothetical protein 698 LA341_07700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_07700 PF03466 LysR substrate binding domain LA341_07710 PF00582 Universal stress protein family LA341_07715 PF01740 STAS domain LA341_07715 PF00916 Sulfate permease family LA341_07730 PF00816 H-NS histone family LA341_07745 PF01734 Patatin-like phospholipase LA341_07770 PF04055 Radical SAM superfamily LA341_07770 PF18693 TRAM domain LA341_07770 PF00919 Uncharacterized protein family UPF0004 LA341_07790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA341_07790 PF02378 Phosphotransferase system, EIIC LA341_07790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA341_07795 PF07690 Major Facilitator Superfamily LA341_07800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA341_07810 PF00849 RNA pseudouridylate synthase LA341_07815 PF00293 NUDIX domain LA341_07825 PF04356 Protein of unknown function (DUF489) LA341_07830 PF08328 Adenylosuccinate lyase C-terminal LA341_07830 PF00206 Lyase LA341_07835 PF08007 Cupin superfamily protein LA341_07845 PF13508 Acetyltransferase (GNAT) domain LA341_07850 PF13417 Glutathione S-transferase, N-terminal domain LA341_07850 PF00043 Glutathione S-transferase, C-terminal domain LA341_07855 PF01243 Pyridoxamine 5'-phosphate oxidase LA341_07855 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LA341_07860 PF01189 16S rRNA methyltransferase RsmB/F LA341_07860 PF01029 NusB family LA341_07865 PF00462 Glutaredoxin LA341_07870 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LA341_07870 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LA341_07875 PF04333 MlaA lipoprotein LA341_07885 PF03918 Cytochrome C biogenesis protein LA341_07890 PF08534 Redoxin LA341_07895 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LA341_07895 PF01578 Cytochrome C assembly protein LA341_07900 PF03100 CcmE LA341_07905 PF04995 Heme exporter protein D (CcmD) LA341_07910 PF01578 Cytochrome C assembly protein LA341_07915 PF03379 CcmB protein LA341_07920 PF00005 ABC transporter LA341_07930 PF01584 CheW-like domain LA341_07940 PF13614 AAA domain LA341_07945 PF00691 OmpA family LA341_07945 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA341_07950 PF01618 MotA/TolQ/ExbB proton channel family LA341_07955 PF00072 Response regulator receiver domain LA341_07955 PF01339 CheB methylesterase LA341_07960 PF02895 Signal transducing histidine kinase, homodimeric domain LA341_07960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_07960 PF01584 CheW-like domain LA341_07960 PF00072 Response regulator receiver domain LA341_07960 PF01627 Hpt domain LA341_07965 PF04344 Chemotaxis phosphatase, CheZ LA341_07970 PF00072 Response regulator receiver domain LA341_07975 PF04539 Sigma-70 region 3 LA341_07975 PF04542 Sigma-70 region 2 LA341_07975 PF04545 Sigma-70, region 4 LA341_07980 PF10609 NUBPL iron-transfer P-loop NTPase LA341_07985 PF00448 SRP54-type protein, GTPase domain LA341_07990 PF00771 FHIPEP family LA341_07995 PF01312 FlhB HrpN YscU SpaS Family LA341_08000 PF01311 Bacterial export proteins, family 1 LA341_08005 PF01313 Bacterial export proteins, family 3 LA341_08010 PF00813 FliP family LA341_08015 PF04347 Flagellar biosynthesis protein, FliO LA341_08020 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LA341_08025 PF02154 Flagellar motor switch protein FliM LA341_08025 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LA341_08045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA341_08045 PF18269 T3SS EscN ATPase C-terminal domain LA341_08055 PF01706 FliG C-terminal domain LA341_08055 PF14842 FliG N-terminal domain LA341_08055 PF14841 FliG middle domain LA341_08060 PF08345 Flagellar M-ring protein C-terminal LA341_08060 PF01514 Secretory protein of YscJ/FliF family LA341_08065 PF02049 Flagellar hook-basal body complex protein FliE LA341_08080 PF00224 Pyruvate kinase, barrel domain LA341_08080 PF02887 Pyruvate kinase, alpha/beta domain LA341_08085 PF01418 Helix-turn-helix domain, rpiR family LA341_08085 PF01380 SIS domain LA341_08090 PF02685 Glucokinase LA341_08105 PF00860 Permease family LA341_08120 PF03949 Malic enzyme, NAD binding domain LA341_08120 PF00390 Malic enzyme, N-terminal domain LA341_08130 PF13247 4Fe-4S dicluster domain LA341_08135 PF00384 Molybdopterin oxidoreductase LA341_08135 PF01568 Molydopterin dinucleotide binding domain LA341_08135 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA341_08135 PF12838 4Fe-4S dicluster domain LA341_08135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA341_08135 PF00384 Molybdopterin oxidoreductase LA341_08135 PF01568 Molydopterin dinucleotide binding domain LA341_08135 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA341_08135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA341_08135 PF12838 4Fe-4S dicluster domain LA341_08170 PF02634 FdhD/NarQ family LA341_08175 PF12727 PBP superfamily domain LA341_08175 PF12728 Helix-turn-helix domain LA341_08180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_08180 PF00512 His Kinase A (phospho-acceptor) domain LA341_08180 PF00989 PAS fold LA341_08185 PF02954 Bacterial regulatory protein, Fis family LA341_08185 PF00072 Response regulator receiver domain LA341_08185 PF00158 Sigma-54 interaction domain LA341_08190 PF12849 PBP superfamily domain LA341_08195 PF00528 Binding-protein-dependent transport system inner membrane component LA341_08200 PF00005 ABC transporter LA341_08205 PF12804 MobA-like NTP transferase domain LA341_08210 PF00994 Probable molybdopterin binding domain LA341_08210 PF03454 MoeA C-terminal region (domain IV) LA341_08210 PF03453 MoeA N-terminal region (domain I and II) LA341_08215 PF04632 Fusaric acid resistance protein family LA341_08225 PF08447 PAS fold LA341_08225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_08225 PF13426 PAS domain LA341_08250 PF05114 Protein of unknown function (DUF692) LA341_08270 PF10725 Protein of unknown function (DUF2517) LA341_08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_08290 PF00512 His Kinase A (phospho-acceptor) domain LA341_08290 PF01627 Hpt domain LA341_08290 PF00072 Response regulator receiver domain LA341_08290 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_08295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_08300 PF00528 Binding-protein-dependent transport system inner membrane component LA341_08305 PF00528 Binding-protein-dependent transport system inner membrane component LA341_08305 PF12911 N-terminal TM domain of oligopeptide transport permease C LA341_08310 PF00005 ABC transporter LA341_08310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA341_08315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA341_08315 PF00005 ABC transporter LA341_08325 PF01869 BadF/BadG/BcrA/BcrD ATPase family LA341_08330 PF00728 Glycosyl hydrolase family 20, catalytic domain LA341_08330 PF02838 Glycosyl hydrolase family 20, domain 2 LA341_08335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_08335 PF08447 PAS fold LA341_08350 PF08272 Topoisomerase I zinc-ribbon-like LA341_08350 PF01131 DNA topoisomerase LA341_08350 PF01751 Toprim domain LA341_08350 PF01396 Topoisomerase DNA binding C4 zinc finger LA341_08355 PF04996 Succinylarginine dihydrolase LA341_08380 PF16325 Peptidase family U32 C-terminal domain LA341_08380 PF01136 Peptidase family U32 LA341_08385 PF12838 4Fe-4S dicluster domain LA341_08405 PF02635 DsrE/DsrF-like family LA341_08410 PF00990 Diguanylate cyclase, GGDEF domain LA341_08415 PF07690 Major Facilitator Superfamily LA341_08420 PF01343 Peptidase family S49 LA341_08420 PF08496 Peptidase family S49 N-terminal LA341_08425 PF00106 short chain dehydrogenase LA341_08430 PF03466 LysR substrate binding domain LA341_08430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_08435 PF07690 Major Facilitator Superfamily LA341_08440 PF00155 Aminotransferase class I and II LA341_08455 PF00709 Adenylosuccinate synthetase LA341_08460 PF01161 Phosphatidylethanolamine-binding protein LA341_08475 PF03167 Uracil DNA glycosylase superfamily LA341_08480 PF01228 Glycine radical LA341_08485 PF00793 DAHP synthetase I family LA341_08490 PF13369 Transglutaminase-like superfamily LA341_08500 PF13847 Methyltransferase domain LA341_08500 PF17827 PrmC N-terminal domain LA341_08505 PF03462 PCRF domain LA341_08505 PF00472 RF-1 domain LA341_08510 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LA341_08510 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LA341_08510 PF01488 Shikimate / quinate 5-dehydrogenase LA341_08515 PF03550 Outer membrane lipoprotein LolB LA341_08520 PF00288 GHMP kinases N terminal domain LA341_08520 PF08544 GHMP kinases C terminal LA341_08530 PF14572 Phosphoribosyl synthetase-associated domain LA341_08530 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LA341_08535 PF02872 5'-nucleotidase, C-terminal domain LA341_08535 PF00149 Calcineurin-like phosphoesterase LA341_08540 PF01195 Peptidyl-tRNA hydrolase LA341_08545 PF01926 50S ribosome-binding GTPase LA341_08545 PF06071 Protein of unknown function (DUF933) LA341_08590 PF03600 Citrate transporter LA341_08590 PF02080 TrkA-C domain LA341_08595 PF04973 Nicotinamide mononucleotide transporter LA341_08600 PF01048 Phosphorylase superfamily LA341_08610 PF04266 ASCH domain LA341_08615 PF07859 alpha/beta hydrolase fold LA341_08630 PF00012 Hsp70 protein LA341_08640 PF00005 ABC transporter LA341_08640 PF12848 ABC transporter LA341_08650 PF07690 Major Facilitator Superfamily LA341_08655 PF13419 Haloacid dehalogenase-like hydrolase LA341_08670 PF00171 Aldehyde dehydrogenase family LA341_08675 PF04958 Arginine N-succinyltransferase beta subunit LA341_08680 PF00202 Aminotransferase class-III LA341_08685 PF00117 Glutamine amidotransferase class-I LA341_08695 PF00579 tRNA synthetases class I (W and Y) LA341_08700 PF13419 Haloacid dehalogenase-like hydrolase LA341_08705 PF00834 Ribulose-phosphate 3 epimerase family LA341_08710 PF02086 D12 class N6 adenine-specific DNA methyltransferase LA341_08720 PF01761 3-dehydroquinate synthase LA341_08725 PF01202 Shikimate kinase LA341_08730 PF03958 Bacterial type II/III secretion system short domain LA341_08730 PF00263 Bacterial type II and III secretion system protein LA341_08730 PF11741 AMIN domain LA341_08730 PF07660 Secretin and TonB N terminus short domain LA341_08750 PF11104 Type IV pilus assembly protein PilM; LA341_08755 PF00905 Penicillin binding protein transpeptidase domain LA341_08755 PF00912 Transglycosylase LA341_08755 PF17092 Penicillin-binding protein OB-like domain LA341_08760 PF03466 LysR substrate binding domain LA341_08760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_08765 PF00672 HAMP domain LA341_08765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_08780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_08780 PF03466 LysR substrate binding domain LA341_08790 PF01551 Peptidase family M23 LA341_08790 PF08525 Opacity-associated protein A N-terminal motif LA341_08790 PF01476 LysM domain LA341_08800 PF00924 Mechanosensitive ion channel LA341_08800 PF12795 Mechanosensitive ion channel porin domain LA341_08800 PF12794 Mechanosensitive ion channel inner membrane domain 1 LA341_08805 PF03009 Glycerophosphoryl diester phosphodiesterase family LA341_08810 PF02743 Cache domain LA341_08810 PF00672 HAMP domain LA341_08810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_08815 PF00890 FAD binding domain LA341_08815 PF02910 Fumarate reductase flavoprotein C-term LA341_08820 PF13085 2Fe-2S iron-sulfur cluster binding domain LA341_08820 PF13183 4Fe-4S dicluster domain LA341_08825 PF02300 Fumarate reductase subunit C LA341_08830 PF02313 Fumarate reductase subunit D LA341_08840 PF07670 Nucleoside recognition LA341_08845 PF07670 Nucleoside recognition LA341_08850 PF07687 Peptidase dimerisation domain LA341_08850 PF01546 Peptidase family M20/M25/M40 LA341_08860 PF06224 Winged helix DNA-binding domain LA341_08875 PF00501 AMP-binding enzyme LA341_08885 PF00106 short chain dehydrogenase LA341_08895 PF00486 Transcriptional regulatory protein, C terminal LA341_08895 PF00072 Response regulator receiver domain LA341_08900 PF00512 His Kinase A (phospho-acceptor) domain LA341_08900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_08900 PF08521 Two-component sensor kinase N-terminal LA341_08905 PF08443 RimK-like ATP-grasp domain LA341_08905 PF18030 RimK PreATP-grasp domain LA341_08910 PF00478 IMP dehydrogenase / GMP reductase domain LA341_08920 PF01132 Elongation factor P (EF-P) OB domain LA341_08920 PF08207 Elongation factor P (EF-P) KOW-like domain LA341_08920 PF09285 Elongation factor P, C-terminal LA341_08930 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA341_08930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA341_08940 PF00990 Diguanylate cyclase, GGDEF domain LA341_08940 PF00072 Response regulator receiver domain LA341_08945 PF00990 Diguanylate cyclase, GGDEF domain LA341_08950 PF13419 Haloacid dehalogenase-like hydrolase LA341_08960 PF03466 LysR substrate binding domain LA341_08960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_08970 PF01494 FAD binding domain LA341_08975 PF04055 Radical SAM superfamily LA341_08975 PF00919 Uncharacterized protein family UPF0004 LA341_08975 PF01938 TRAM domain LA341_08980 PF02562 PhoH-like protein LA341_08985 PF02130 Uncharacterized protein family UPF0054 LA341_08990 PF03471 Transporter associated domain LA341_08990 PF00571 CBS domain LA341_08995 PF00795 Carbon-nitrogen hydrolase LA341_09005 PF13411 MerR HTH family regulatory protein LA341_09010 PF17768 RecJ OB domain LA341_09010 PF01368 DHH family LA341_09010 PF02272 DHHA1 domain LA341_09020 PF01741 Large-conductance mechanosensitive channel, MscL LA341_09025 PF00990 Diguanylate cyclase, GGDEF domain LA341_09030 PF02899 Phage integrase, N-terminal SAM-like domain LA341_09030 PF00589 Phage integrase family LA341_09035 PF00258 Flavodoxin LA341_09040 PF01523 Putative modulator of DNA gyrase LA341_09045 PF01523 Putative modulator of DNA gyrase LA341_09050 PF07295 Zinc-ribbon containing domain LA341_09055 PF13603 Leucyl-tRNA synthetase, Domain 2 LA341_09055 PF08264 Anticodon-binding domain of tRNA LA341_09055 PF00133 tRNA synthetases class I (I, L, M and V) LA341_09070 PF01467 Cytidylyltransferase-like LA341_09080 PF02590 Predicted SPOUT methyltransferase LA341_09085 PF00905 Penicillin binding protein transpeptidase domain LA341_09085 PF03717 Penicillin-binding Protein dimerisation domain LA341_09090 PF01098 Cell cycle protein LA341_09095 PF13406 Transglycosylase SLT domain LA341_09100 PF05036 Sporulation related domain LA341_09100 PF03330 Lytic transglycolase LA341_09105 PF00768 D-alanyl-D-alanine carboxypeptidase LA341_09105 PF07943 Penicillin-binding protein 5, C-terminal domain LA341_09110 PF04359 Protein of unknown function (DUF493) LA341_09115 PF03099 Biotin/lipoate A/B protein ligase family LA341_09120 PF04055 Radical SAM superfamily LA341_09120 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LA341_09135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LA341_09135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LA341_09140 PF07023 Protein of unknown function (DUF1315) LA341_09145 PF17763 Glutaminase/Asparaginase C-terminal domain LA341_09145 PF00710 Asparaginase, N-terminal LA341_09150 PF03616 Sodium/glutamate symporter LA341_09155 PF00672 HAMP domain LA341_09155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_09155 PF02743 Cache domain LA341_09165 PF00152 tRNA synthetases class II (D, K and N) LA341_09165 PF01336 OB-fold nucleic acid binding domain LA341_09170 PF02567 Phenazine biosynthesis-like protein LA341_09175 PF00175 Oxidoreductase NAD-binding domain LA341_09175 PF00258 Flavodoxin LA341_09175 PF00667 FAD binding domain LA341_09180 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LA341_09180 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LA341_09185 PF01507 Phosphoadenosine phosphosulfate reductase family LA341_09190 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LA341_09195 PF00528 Binding-protein-dependent transport system inner membrane component LA341_09200 PF00005 ABC transporter LA341_09200 PF00571 CBS domain LA341_09205 PF00186 Dihydrofolate reductase LA341_09210 PF12821 Threonine/Serine exporter, ThrE LA341_09215 PF06738 Putative threonine/serine exporter LA341_09225 PF00994 Probable molybdopterin binding domain LA341_09235 PF06004 Bacterial protein of unknown function (DUF903) LA341_09240 PF05922 Peptidase inhibitor I9 LA341_09240 PF00082 Subtilase family LA341_09245 PF00581 Rhodanese-like domain LA341_09250 PF04960 Glutaminase LA341_09255 PF04320 Protein with unknown function (DUF469) LA341_09260 PF02390 Putative methyltransferase LA341_09265 PF00155 Aminotransferase class I and II LA341_09270 PF08338 Domain of unknown function (DUF1731) LA341_09270 PF01370 NAD dependent epimerase/dehydratase family LA341_09280 PF00005 ABC transporter LA341_09285 PF13472 GDSL-like Lipase/Acylhydrolase family LA341_09290 PF01584 CheW-like domain LA341_09290 PF00072 Response regulator receiver domain LA341_09295 PF00704 Glycosyl hydrolases family 18 LA341_09295 PF06483 Chitinase C LA341_09330 PF00704 Glycosyl hydrolases family 18 LA341_09330 PF08329 Chitinase A, N-terminal domain LA341_09335 PF07689 KaiB domain LA341_09335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_09335 PF00512 His Kinase A (phospho-acceptor) domain LA341_09340 PF12832 MFS_1 like family LA341_09350 PF13457 GW (Gly-Tryp) dipeptide domain LA341_09350 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LA341_09355 PF04717 Type VI secretion system, phage-baseplate injector LA341_09360 PF05638 Type VI secretion system effector, Hcp LA341_09365 PF07715 TonB-dependent Receptor Plug Domain LA341_09365 PF00593 TonB dependent receptor LA341_09385 PF01243 Pyridoxamine 5'-phosphate oxidase LA341_09390 PF06228 Haem utilisation ChuX/HutX LA341_09400 PF01032 FecCD transport family LA341_09405 PF00005 ABC transporter LA341_09415 PF03575 Peptidase family S51 LA341_09420 PF01894 Uncharacterised protein family UPF0047 LA341_09425 PF01168 Alanine racemase, N-terminal domain LA341_09425 PF00842 Alanine racemase, C-terminal domain LA341_09430 PF00772 DnaB-like helicase N terminal domain LA341_09430 PF03796 DnaB-like helicase C terminal domain LA341_09440 PF00149 Calcineurin-like phosphoesterase LA341_09440 PF02872 5'-nucleotidase, C-terminal domain LA341_09460 PF02954 Bacterial regulatory protein, Fis family LA341_09460 PF00072 Response regulator receiver domain LA341_09460 PF00158 Sigma-54 interaction domain LA341_09465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA341_09465 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LA341_09475 PF04102 SlyX LA341_09480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA341_09485 PF09526 Probable metal-binding protein (DUF2387) LA341_09495 PF01584 CheW-like domain LA341_09495 PF00072 Response regulator receiver domain LA341_09500 PF00561 alpha/beta hydrolase fold LA341_09505 PF06794 Uncharacterised protein family (UPF0270) LA341_09510 PF00485 Phosphoribulokinase / Uridine kinase family LA341_09525 PF02566 OsmC-like protein LA341_09530 PF13545 Crp-like helix-turn-helix domain LA341_09530 PF00027 Cyclic nucleotide-binding domain LA341_09535 PF08241 Methyltransferase domain LA341_09540 PF00267 Gram-negative porin LA341_09550 PF00582 Universal stress protein family LA341_09565 PF00294 pfkB family carbohydrate kinase LA341_09570 PF04227 Indigoidine synthase A like protein LA341_09600 PF00550 Phosphopantetheine attachment site LA341_09605 PF00550 Phosphopantetheine attachment site LA341_09615 PF00501 AMP-binding enzyme LA341_09615 PF13193 AMP-binding enzyme C-terminal domain LA341_09620 PF07977 FabA-like domain LA341_09630 PF00221 Aromatic amino acid lyase LA341_09655 PF00109 Beta-ketoacyl synthase, N-terminal domain LA341_09655 PF02801 Beta-ketoacyl synthase, C-terminal domain LA341_09670 PF00109 Beta-ketoacyl synthase, N-terminal domain LA341_09670 PF02801 Beta-ketoacyl synthase, C-terminal domain LA341_09675 PF00194 Eukaryotic-type carbonic anhydrase LA341_09680 PF00034 Cytochrome c LA341_09680 PF03150 Di-haem cytochrome c peroxidase LA341_09685 PF00561 alpha/beta hydrolase fold LA341_09700 PF06877 Regulator of ribonuclease activity B LA341_09705 PF03707 Bacterial signalling protein N terminal repeat LA341_09705 PF00990 Diguanylate cyclase, GGDEF domain LA341_09705 PF00563 EAL domain LA341_09730 PF06826 Predicted Permease Membrane Region LA341_09730 PF02080 TrkA-C domain LA341_09735 PF03006 Haemolysin-III related LA341_09740 PF00282 Pyridoxal-dependent decarboxylase conserved domain LA341_09745 PF04279 Intracellular septation protein A LA341_09750 PF03795 YCII-related domain LA341_09755 PF00459 Inositol monophosphatase family LA341_09765 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LA341_09770 PF11967 Recombination protein O N terminal LA341_09770 PF02565 Recombination protein O C terminal LA341_09775 PF01926 50S ribosome-binding GTPase LA341_09775 PF07650 KH domain LA341_09780 PF14622 Ribonuclease-III-like LA341_09780 PF00035 Double-stranded RNA binding motif LA341_09785 PF10502 Signal peptidase, peptidase S26 LA341_09790 PF00679 Elongation factor G C-terminus LA341_09790 PF03144 Elongation factor Tu domain 2 LA341_09790 PF06421 GTP-binding protein LepA C-terminus LA341_09790 PF00009 Elongation factor Tu GTP binding domain LA341_09800 PF03888 MucB/RseB N-terminal domain LA341_09800 PF17188 MucB/RseB C-terminal domain LA341_09805 PF03873 Anti sigma-E protein RseA, C-terminal domain LA341_09805 PF03872 Anti sigma-E protein RseA, N-terminal domain LA341_09810 PF08281 Sigma-70, region 4 LA341_09810 PF04542 Sigma-70 region 2 LA341_09815 PF02910 Fumarate reductase flavoprotein C-term LA341_09815 PF00890 FAD binding domain LA341_09825 PF03937 Flavinator of succinate dehydrogenase LA341_09830 PF01571 Aminomethyltransferase folate-binding domain LA341_09835 PF03466 LysR substrate binding domain LA341_09835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_09850 PF03091 CutA1 divalent ion tolerance protein LA341_09855 PF02683 Cytochrome C biogenesis protein transmembrane region LA341_09855 PF11412 Disulphide bond corrector protein DsbC LA341_09865 PF01266 FAD dependent oxidoreductase LA341_09870 PF01116 Fructose-bisphosphate aldolase class-II LA341_09875 PF00162 Phosphoglycerate kinase LA341_09880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LA341_09880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LA341_09885 PF00480 ROK family LA341_09890 PF01208 Uroporphyrinogen decarboxylase (URO-D) LA341_09895 PF09297 NADH pyrophosphatase zinc ribbon domain LA341_09895 PF00293 NUDIX domain LA341_09900 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LA341_09900 PF14850 DNA-binding domain of Proline dehydrogenase LA341_09900 PF01619 Proline dehydrogenase LA341_09900 PF00171 Aldehyde dehydrogenase family LA341_09905 PF08239 Bacterial SH3 domain LA341_09910 PF00520 Ion transport protein LA341_09910 PF00027 Cyclic nucleotide-binding domain LA341_09915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_09915 PF00672 HAMP domain LA341_09915 PF02743 Cache domain LA341_09920 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA341_09925 PF00672 HAMP domain LA341_09925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_09935 PF00313 'Cold-shock' DNA-binding domain LA341_09975 PF00929 Exonuclease LA341_09980 PF03193 RsgA GTPase LA341_09985 PF02666 Phosphatidylserine decarboxylase LA341_09990 PF09905 DNA-binding protein VF530 LA341_10000 PF00171 Aldehyde dehydrogenase family LA341_10005 PF00696 Amino acid kinase family LA341_10005 PF01472 PUA domain LA341_10010 PF07417 Sigma factor-binding transcriptional regulator Crl LA341_10015 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LA341_10020 PF00156 Phosphoribosyl transferase domain LA341_10025 PF01546 Peptidase family M20/M25/M40 LA341_10025 PF07687 Peptidase dimerisation domain LA341_10030 PF00226 DnaJ domain LA341_10030 PF05099 Tellurite resistance protein TerB LA341_10035 PF00483 Nucleotidyl transferase LA341_10040 PF01636 Phosphotransferase enzyme family LA341_10045 PF04453 LPS transport system D LA341_10045 PF03968 OstA-like protein LA341_10050 PF00639 PPIC-type PPIASE domain LA341_10050 PF09312 SurA N-terminal domain LA341_10055 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LA341_10060 PF00398 Ribosomal RNA adenine dimethylase LA341_10065 PF04379 ApaG domain LA341_10070 PF00149 Calcineurin-like phosphoesterase LA341_10080 PF00296 Luciferase-like monooxygenase LA341_10090 PF00501 AMP-binding enzyme LA341_10090 PF13193 AMP-binding enzyme C-terminal domain LA341_10095 PF07670 Nucleoside recognition LA341_10100 PF01018 GTP1/OBG LA341_10100 PF01926 50S ribosome-binding GTPase LA341_10105 PF01016 Ribosomal L27 protein LA341_10110 PF00829 Ribosomal prokaryotic L21 protein LA341_10115 PF00348 Polyprenyl synthetase LA341_10120 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LA341_10125 PF01145 SPFH domain / Band 7 family LA341_10130 PF12221 Bacterial membrane protein N terminal LA341_10130 PF01145 SPFH domain / Band 7 family LA341_10135 PF16360 GTP-binding GTPase Middle Region LA341_10135 PF13167 GTP-binding GTPase N-terminal LA341_10135 PF01926 50S ribosome-binding GTPase LA341_10140 PF17209 Hfq protein LA341_10150 PF01119 DNA mismatch repair protein, C-terminal domain LA341_10150 PF08676 MutL C terminal dimerisation domain LA341_10155 PF01520 N-acetylmuramoyl-L-alanine amidase LA341_10160 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LA341_10165 PF03853 YjeF-related protein N-terminus LA341_10165 PF01256 Carbohydrate kinase LA341_10170 PF08331 Domain of unknown function (DUF1730) LA341_10175 PF00480 ROK family LA341_10185 PF00005 ABC transporter LA341_10185 PF09383 NIL domain LA341_10190 PF00528 Binding-protein-dependent transport system inner membrane component LA341_10195 PF03180 NLPA lipoprotein LA341_10200 PF02357 Transcription termination factor nusG LA341_10205 PF03707 Bacterial signalling protein N terminal repeat LA341_10205 PF00990 Diguanylate cyclase, GGDEF domain LA341_10205 PF00563 EAL domain LA341_10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_10210 PF00512 His Kinase A (phospho-acceptor) domain LA341_10210 PF09456 RcsC Alpha-Beta-Loop (ABL) LA341_10210 PF00072 Response regulator receiver domain LA341_10220 PF01966 HD domain LA341_10225 PF01627 Hpt domain LA341_10225 PF18415 Histidine kinase receptor ArcB trans-membrane domain LA341_10225 PF00512 His Kinase A (phospho-acceptor) domain LA341_10225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_10225 PF00072 Response regulator receiver domain LA341_10225 PF00989 PAS fold LA341_10245 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LA341_10250 PF01259 SAICAR synthetase LA341_10255 PF06804 NlpB/DapX lipoprotein LA341_10260 PF00701 Dihydrodipicolinate synthetase family LA341_10265 PF01842 ACT domain LA341_10270 PF00578 AhpC/TSA family LA341_10275 PF03887 YfbU domain LA341_10280 PF04217 Protein of unknown function, DUF412 LA341_10285 PF00871 Acetokinase family LA341_10290 PF01515 Phosphate acetyl/butaryl transferase LA341_10290 PF07085 DRTGG domain LA341_10300 PF00483 Nucleotidyl transferase LA341_10305 PF00854 POT family LA341_10310 PF00072 Response regulator receiver domain LA341_10340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_10350 PF01207 Dihydrouridine synthase (Dus) LA341_10355 PF02954 Bacterial regulatory protein, Fis family LA341_10375 PF01546 Peptidase family M20/M25/M40 LA341_10380 PF03466 LysR substrate binding domain LA341_10380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_10385 PF01810 LysE type translocator LA341_10390 PF10369 Small subunit of acetolactate synthase LA341_10395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA341_10395 PF00205 Thiamine pyrophosphate enzyme, central domain LA341_10395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LA341_10410 PF01569 PAP2 superfamily LA341_10420 PF08502 LeuA allosteric (dimerisation) domain LA341_10420 PF00682 HMGL-like LA341_10425 PF00180 Isocitrate/isopropylmalate dehydrogenase LA341_10430 PF00330 Aconitase family (aconitate hydratase) LA341_10435 PF00694 Aconitase C-terminal domain LA341_10455 PF00528 Binding-protein-dependent transport system inner membrane component LA341_10460 PF00005 ABC transporter LA341_10470 PF02562 PhoH-like protein LA341_10470 PF13638 PIN domain LA341_10480 PF02867 Ribonucleotide reductase, barrel domain LA341_10480 PF00317 Ribonucleotide reductase, all-alpha domain LA341_10480 PF08343 Ribonucleotide reductase N-terminal LA341_10510 PF00990 Diguanylate cyclase, GGDEF domain LA341_10510 PF03707 Bacterial signalling protein N terminal repeat LA341_10510 PF00563 EAL domain LA341_10520 PF00118 TCP-1/cpn60 chaperonin family LA341_10525 PF00166 Chaperonin 10 Kd subunit LA341_10530 PF01554 MatE LA341_10535 PF04186 FxsA cytoplasmic membrane protein LA341_10540 PF10415 Fumarase C C-terminus LA341_10540 PF00206 Lyase LA341_10545 PF03605 Anaerobic c4-dicarboxylate membrane transporter LA341_10550 PF00814 Glycoprotease family LA341_10555 PF01165 Ribosomal protein S21 LA341_10560 PF09424 Yqey-like protein LA341_10565 PF10410 DnaB-helicase binding domain of primase LA341_10565 PF01807 CHC2 zinc finger LA341_10565 PF08278 DNA primase DnaG DnaB-binding LA341_10565 PF08275 DNA primase catalytic core, N-terminal domain LA341_10570 PF03979 Sigma-70 factor, region 1.1 LA341_10570 PF04542 Sigma-70 region 2 LA341_10570 PF04539 Sigma-70 region 3 LA341_10570 PF04545 Sigma-70, region 4 LA341_10570 PF04546 Sigma-70, non-essential region LA341_10570 PF00140 Sigma-70 factor, region 1.2 LA341_10590 PF01037 Lrp/AsnC ligand binding domain LA341_10600 PF07690 Major Facilitator Superfamily LA341_10620 PF00209 Sodium:neurotransmitter symporter family LA341_10630 PF00209 Sodium:neurotransmitter symporter family LA341_10695 PF16331 TolA binding protein trimerisation LA341_10695 PF13174 Tetratricopeptide repeat LA341_10700 PF00691 OmpA family LA341_10705 PF04052 TolB amino-terminal domain LA341_10705 PF07676 WD40-like Beta Propeller Repeat LA341_10715 PF02472 Biopolymer transport protein ExbD/TolR LA341_10720 PF01618 MotA/TolQ/ExbB proton channel family LA341_10725 PF03061 Thioesterase superfamily LA341_10730 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LA341_10735 PF08173 Membrane bound YbgT-like protein LA341_10740 PF02322 Cytochrome bd terminal oxidase subunit II LA341_10745 PF01654 Cytochrome bd terminal oxidase subunit I LA341_10750 PF17864 RuvB AAA lid domain LA341_10750 PF05496 Holliday junction DNA helicase RuvB P-loop domain LA341_10750 PF05491 RuvB C-terminal winged helix domain LA341_10755 PF07499 RuvA, C-terminal domain LA341_10755 PF01330 RuvA N terminal domain LA341_10760 PF00672 HAMP domain LA341_10760 PF12729 Four helix bundle sensory module for signal transduction LA341_10760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_10765 PF00149 Calcineurin-like phosphoesterase LA341_10765 PF02872 5'-nucleotidase, C-terminal domain LA341_10770 PF01810 LysE type translocator LA341_10780 PF00765 Autoinducer synthase LA341_10785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_10785 PF03466 LysR substrate binding domain LA341_10790 PF17876 Cold shock domain LA341_10790 PF00773 RNB domain LA341_10790 PF08206 Ribonuclease B OB domain LA341_10795 PF00360 Phytochrome region LA341_10795 PF00563 EAL domain LA341_10795 PF01590 GAF domain LA341_10795 PF00990 Diguanylate cyclase, GGDEF domain LA341_10805 PF13419 Haloacid dehalogenase-like hydrolase LA341_10810 PF17209 Hfq protein LA341_10815 PF04403 Paraquat-inducible protein A LA341_10820 PF02470 MlaD protein LA341_10825 PF03886 ABC-type transport auxiliary lipoprotein component LA341_10830 PF01938 TRAM domain LA341_10830 PF05958 tRNA (Uracil-5-)-methyltransferase LA341_10835 PF03129 Anticodon binding domain LA341_10835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA341_10835 PF04073 Aminoacyl-tRNA editing domain LA341_10840 PF00106 short chain dehydrogenase LA341_10855 PF00378 Enoyl-CoA hydratase/isomerase LA341_10860 PF10952 Protein of unknown function (DUF2753) LA341_10865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_10865 PF00512 His Kinase A (phospho-acceptor) domain LA341_10865 PF02743 Cache domain LA341_10870 PF02954 Bacterial regulatory protein, Fis family LA341_10870 PF00072 Response regulator receiver domain LA341_10870 PF00158 Sigma-54 interaction domain LA341_10875 PF03480 Bacterial extracellular solute-binding protein, family 7 LA341_10880 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LA341_10885 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LA341_10895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_10905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_10905 PF08447 PAS fold LA341_10910 PF01207 Dihydrouridine synthase (Dus) LA341_10915 PF01475 Ferric uptake regulator family LA341_10930 PF05525 Branched-chain amino acid transport protein LA341_10935 PF05175 Methyltransferase small domain LA341_10940 PF00270 DEAD/DEAH box helicase LA341_10940 PF00271 Helicase conserved C-terminal domain LA341_10945 PF13673 Acetyltransferase (GNAT) domain LA341_10955 PF08032 RNA 2'-O ribose methyltransferase substrate binding LA341_10955 PF00588 SpoU rRNA Methylase family LA341_10985 PF17876 Cold shock domain LA341_10985 PF08461 Ribonuclease R winged-helix domain LA341_10985 PF08206 Ribonuclease B OB domain LA341_10985 PF00773 RNB domain LA341_10985 PF00575 S1 RNA binding domain LA341_10990 PF00990 Diguanylate cyclase, GGDEF domain LA341_10995 PF00691 OmpA family LA341_10995 PF01389 OmpA-like transmembrane domain LA341_11000 PF00657 GDSL-like Lipase/Acylhydrolase LA341_11005 PF04076 Bacterial OB fold (BOF) protein LA341_11010 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LA341_11010 PF01464 Transglycosylase SLT domain LA341_11015 PF04362 Bacterial Fe(2+) trafficking LA341_11020 PF14815 NUDIX domain LA341_11020 PF00730 HhH-GPD superfamily base excision DNA repair protein LA341_11020 PF00633 Helix-hairpin-helix motif LA341_11020 PF10576 Iron-sulfur binding domain of endonuclease III LA341_11025 PF01743 Poly A polymerase head domain LA341_11025 PF01966 HD domain LA341_11025 PF12627 Probable RNA and SrmB- binding site of polymerase A LA341_11030 PF02028 BCCT, betaine/carnitine/choline family transporter LA341_11045 PF00543 Nitrogen regulatory protein P-II LA341_11050 PF00472 RF-1 domain LA341_11055 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LA341_11055 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LA341_11065 PF03883 Peroxide stress protein YaaA LA341_11070 PF00437 Type II/IV secretion system protein LA341_11075 PF00437 Type II/IV secretion system protein LA341_11080 PF01168 Alanine racemase, N-terminal domain LA341_11085 PF03807 NADP oxidoreductase coenzyme F420-dependent LA341_11085 PF14748 Pyrroline-5-carboxylate reductase dimerisation LA341_11090 PF02325 YGGT family LA341_11095 PF02594 Uncharacterised ACR, YggU family COG1872 LA341_11105 PF01773 Na+ dependent nucleoside transporter N-terminus LA341_11105 PF07662 Na+ dependent nucleoside transporter C-terminus LA341_11105 PF07670 Nucleoside recognition LA341_11110 PF03466 LysR substrate binding domain LA341_11110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_11115 PF00255 Glutathione peroxidase LA341_11125 PF02595 Glycerate kinase family LA341_11130 PF02447 GntP family permease LA341_11135 PF05651 Putative sugar diacid recognition LA341_11135 PF17853 GGDEF-like domain LA341_11135 PF13556 PucR C-terminal helix-turn-helix domain LA341_11140 PF06062 Uncharacterised protein family (UPF0231) LA341_11155 PF00271 Helicase conserved C-terminal domain LA341_11155 PF00270 DEAD/DEAH box helicase LA341_11160 PF08534 Redoxin LA341_11165 PF00403 Heavy-metal-associated domain LA341_11170 PF17967 Pullulanase N2 domain LA341_11170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA341_11170 PF11852 Domain of unknown function (DUF3372) LA341_11170 PF03714 Bacterial pullanase-associated domain LA341_11170 PF18494 Pullulanase Ins domain LA341_11180 PF00303 Thymidylate synthase LA341_11185 PF01790 Prolipoprotein diacylglyceryl transferase LA341_11190 PF01590 GAF domain LA341_11190 PF02896 PEP-utilising enzyme, TIM barrel domain LA341_11190 PF00391 PEP-utilising enzyme, mobile domain LA341_11190 PF05524 PEP-utilising enzyme, N-terminal LA341_11195 PF00293 NUDIX domain LA341_11200 PF02976 DNA mismatch repair enzyme MutH LA341_11210 PF01245 Ribosomal protein L19 LA341_11215 PF01746 tRNA (Guanine-1)-methyltransferase LA341_11220 PF05239 PRC-barrel domain LA341_11220 PF01782 RimM N-terminal domain LA341_11225 PF00886 Ribosomal protein S16 LA341_11230 PF02978 Signal peptide binding domain LA341_11230 PF02881 SRP54-type protein, helical bundle domain LA341_11230 PF00448 SRP54-type protein, GTPase domain LA341_11235 PF01578 Cytochrome C assembly protein LA341_11240 PF03471 Transporter associated domain LA341_11240 PF00571 CBS domain LA341_11240 PF01595 Cyclin M transmembrane N-terminal domain LA341_11245 PF02082 Transcriptional regulator LA341_11250 PF00970 Oxidoreductase FAD-binding domain LA341_11250 PF00042 Globin LA341_11250 PF00175 Oxidoreductase NAD-binding domain LA341_11255 PF08238 Sel1 repeat LA341_11260 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LA341_11260 PF00056 lactate/malate dehydrogenase, NAD binding domain LA341_11265 PF00528 Binding-protein-dependent transport system inner membrane component LA341_11270 PF00528 Binding-protein-dependent transport system inner membrane component LA341_11275 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_11280 PF00005 ABC transporter LA341_11285 PF02863 Arginine repressor, C-terminal domain LA341_11285 PF01316 Arginine repressor, DNA binding domain LA341_11290 PF04261 Dyp-type peroxidase family LA341_11295 PF00005 ABC transporter LA341_11295 PF08402 TOBE domain LA341_11305 PF13416 Bacterial extracellular solute-binding protein LA341_11315 PF02583 Metal-sensitive transcriptional repressor LA341_11320 PF00155 Aminotransferase class I and II LA341_11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_11325 PF03466 LysR substrate binding domain LA341_11335 PF04055 Radical SAM superfamily LA341_11340 PF11230 Protein of unknown function (DUF3029) LA341_11355 PF01594 AI-2E family transporter LA341_11360 PF02321 Outer membrane efflux protein LA341_11410 PF00535 Glycosyl transferase family 2 LA341_11415 PF01522 Polysaccharide deacetylase LA341_11415 PF14883 Hypothetical glycosyl hydrolase family 13 LA341_11445 PF12729 Four helix bundle sensory module for signal transduction LA341_11445 PF00672 HAMP domain LA341_11445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_11450 PF18416 N-acetylglucosamine binding protein domain 2 LA341_11450 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LA341_11455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_11455 PF03466 LysR substrate binding domain LA341_11460 PF00005 ABC transporter LA341_11460 PF12857 TOBE-like domain LA341_11465 PF00528 Binding-protein-dependent transport system inner membrane component LA341_11470 PF00528 Binding-protein-dependent transport system inner membrane component LA341_11485 PF13194 Domain of unknown function (DUF4010) LA341_11490 PF14602 Hexapeptide repeat of succinyl-transferase LA341_11490 PF12464 Maltose acetyltransferase LA341_11505 PF13419 Haloacid dehalogenase-like hydrolase LA341_11510 PF00293 NUDIX domain LA341_11515 PF00459 Inositol monophosphatase family LA341_11520 PF03222 Tryptophan/tyrosine permease family LA341_11525 PF01588 Putative tRNA binding domain LA341_11530 PF01340 Met Apo-repressor, MetJ LA341_11535 PF01053 Cys/Met metabolism PLP-dependent enzyme LA341_11540 PF00742 Homoserine dehydrogenase LA341_11540 PF03447 Homoserine dehydrogenase, NAD binding domain LA341_11540 PF00696 Amino acid kinase family LA341_11545 PF01384 Phosphate transporter family LA341_11550 PF01865 Protein of unknown function DUF47 LA341_11560 PF00701 Dihydrodipicolinate synthetase family LA341_11565 PF08468 Methyltransferase small domain N-terminal LA341_11565 PF05175 Methyltransferase small domain LA341_11570 PF00483 Nucleotidyl transferase LA341_11575 PF08323 Starch synthase catalytic domain LA341_11575 PF00534 Glycosyl transferases group 1 LA341_11615 PF03553 Na+/H+ antiporter family LA341_11620 PF01521 Iron-sulphur cluster biosynthesis LA341_11630 PF00654 Voltage gated chloride channel LA341_11635 PF00202 Aminotransferase class-III LA341_11650 PF06965 Na+/H+ antiporter 1 LA341_11650 PF13462 Thioredoxin LA341_11700 PF01381 Helix-turn-helix LA341_11700 PF07883 Cupin domain LA341_11705 PF03594 Benzoate membrane transport protein LA341_11710 PF02219 Methylenetetrahydrofolate reductase LA341_11725 PF00672 HAMP domain LA341_11725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_11730 PF03922 OmpW family LA341_11735 PF00990 Diguanylate cyclase, GGDEF domain LA341_11740 PF00005 ABC transporter LA341_11740 PF17755 UvrA DNA-binding domain LA341_11740 PF17760 UvrA interaction domain LA341_11745 PF00436 Single-strand binding protein family LA341_11755 PF01545 Cation efflux family LA341_11755 PF16916 Dimerisation domain of Zinc Transporter LA341_11760 PF00313 'Cold-shock' DNA-binding domain LA341_11765 PF00860 Permease family LA341_11770 PF02733 Dak1 domain LA341_11775 PF02734 DAK2 domain LA341_11780 PF03610 PTS system fructose IIA component LA341_11780 PF05524 PEP-utilising enzyme, N-terminal LA341_11780 PF00391 PEP-utilising enzyme, mobile domain LA341_11780 PF00381 PTS HPr component phosphorylation site LA341_11785 PF00465 Iron-containing alcohol dehydrogenase LA341_11790 PF02954 Bacterial regulatory protein, Fis family LA341_11790 PF00158 Sigma-54 interaction domain LA341_11790 PF00989 PAS fold LA341_11810 PF01594 AI-2E family transporter LA341_11815 PF13344 Haloacid dehalogenase-like hydrolase LA341_11815 PF00293 NUDIX domain LA341_11825 PF01479 S4 domain LA341_11830 PF01430 Hsp33 protein LA341_11840 PF00392 Bacterial regulatory proteins, gntR family LA341_11845 PF01321 Creatinase/Prolidase N-terminal domain LA341_11845 PF00557 Metallopeptidase family M24 LA341_11850 PF11756 Nitrous oxide-stimulated promoter LA341_11855 PF00583 Acetyltransferase (GNAT) family LA341_11860 PF05433 Glycine zipper 2TM domain LA341_11865 PF00909 Ammonium Transporter Family LA341_11870 PF01638 HxlR-like helix-turn-helix LA341_11880 PF06055 Exopolysaccharide synthesis, ExoD LA341_11890 PF00990 Diguanylate cyclase, GGDEF domain LA341_11900 PF13036 Peptidoglycan-synthase activator LpoB LA341_11905 PF00990 Diguanylate cyclase, GGDEF domain LA341_11930 PF02660 Glycerol-3-phosphate acyltransferase LA341_11935 PF02152 Dihydroneopterin aldolase LA341_11940 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LA341_11950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_11950 PF00672 HAMP domain LA341_11955 PF07690 Major Facilitator Superfamily LA341_11960 PF02492 CobW/HypB/UreG, nucleotide-binding domain LA341_11960 PF07683 Cobalamin synthesis protein cobW C-terminal domain LA341_11990 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LA341_12000 PF07690 Major Facilitator Superfamily LA341_12005 PF01914 MarC family integral membrane protein LA341_12015 PF01523 Putative modulator of DNA gyrase LA341_12020 PF00795 Carbon-nitrogen hydrolase LA341_12025 PF13502 AsmA-like C-terminal region LA341_12025 PF13116 Protein of unknown function LA341_12030 PF00575 S1 RNA binding domain LA341_12030 PF10150 Ribonuclease E/G family LA341_12035 PF02545 Maf-like protein LA341_12040 PF04093 rod shape-determining protein MreD LA341_12045 PF04085 rod shape-determining protein MreC LA341_12075 PF00114 Pilin (bacterial filament) LA341_12075 PF07963 Prokaryotic N-terminal methylation motif LA341_12080 PF07963 Prokaryotic N-terminal methylation motif LA341_12085 PF07963 Prokaryotic N-terminal methylation motif LA341_12095 PF00482 Type II secretion system (T2SS), protein F LA341_12100 PF00437 Type II/IV secretion system protein LA341_12100 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LA341_12115 PF00263 Bacterial type II and III secretion system protein LA341_12115 PF03958 Bacterial type II/III secretion system short domain LA341_12145 PF17157 Gammaproteobacterial periplasmic sensor domain LA341_12145 PF00563 EAL domain LA341_12145 PF00990 Diguanylate cyclase, GGDEF domain LA341_12155 PF00563 EAL domain LA341_12155 PF12792 CSS motif domain associated with EAL LA341_12160 PF01699 Sodium/calcium exchanger protein LA341_12165 PF00221 Aromatic amino acid lyase LA341_12170 PF01175 Urocanase Rossmann-like domain LA341_12170 PF17392 Urocanase C-terminal domain LA341_12170 PF17391 Urocanase N-terminal domain LA341_12175 PF00491 Arginase family LA341_12180 PF01979 Amidohydrolase family LA341_12185 PF07670 Nucleoside recognition LA341_12190 PF00392 Bacterial regulatory proteins, gntR family LA341_12190 PF07702 UTRA domain LA341_12195 PF00484 Carbonic anhydrase LA341_12200 PF04545 Sigma-70, region 4 LA341_12200 PF00140 Sigma-70 factor, region 1.2 LA341_12200 PF04542 Sigma-70 region 2 LA341_12205 PF18075 FtsX extracellular domain LA341_12210 PF00005 ABC transporter LA341_12215 PF00448 SRP54-type protein, GTPase domain LA341_12215 PF02881 SRP54-type protein, helical bundle domain LA341_12240 PF02254 TrkA-N domain LA341_12240 PF00999 Sodium/hydrogen exchanger family LA341_12245 PF02525 Flavodoxin-like fold LA341_12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_12250 PF03466 LysR substrate binding domain LA341_12255 PF00106 short chain dehydrogenase LA341_12270 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LA341_12270 PF00326 Prolyl oligopeptidase family LA341_12285 PF13091 PLD-like domain LA341_12290 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_12290 PF01464 Transglycosylase SLT domain LA341_12300 PF02416 mttA/Hcf106 family LA341_12305 PF03466 LysR substrate binding domain LA341_12305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_12310 PF01914 MarC family integral membrane protein LA341_12315 PF10678 Protein of unknown function (DUF2492) LA341_12320 PF00375 Sodium:dicarboxylate symporter family LA341_12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_12330 PF03466 LysR substrate binding domain LA341_12335 PF13533 Biotin-lipoyl like LA341_12340 PF07690 Major Facilitator Superfamily LA341_12345 PF07947 YhhN family LA341_12355 PF00440 Bacterial regulatory proteins, tetR family LA341_12400 PF03144 Elongation factor Tu domain 2 LA341_12400 PF00009 Elongation factor Tu GTP binding domain LA341_12400 PF03143 Elongation factor Tu C-terminal domain LA341_12405 PF14492 Elongation Factor G, domain II LA341_12405 PF03764 Elongation factor G, domain IV LA341_12405 PF00009 Elongation factor Tu GTP binding domain LA341_12405 PF03144 Elongation factor Tu domain 2 LA341_12405 PF00679 Elongation factor G C-terminus LA341_12410 PF00177 Ribosomal protein S7p/S5e LA341_12415 PF00164 Ribosomal protein S12/S23 LA341_12420 PF04077 DsrH like protein LA341_12425 PF02635 DsrE/DsrF-like family LA341_12430 PF02635 DsrE/DsrF-like family LA341_12435 PF01042 Endoribonuclease L-PSP LA341_12440 PF08348 YheO-like PAS domain LA341_12440 PF13309 HTH domain LA341_12445 PF04997 RNA polymerase Rpb1, domain 1 LA341_12445 PF04998 RNA polymerase Rpb1, domain 5 LA341_12445 PF05000 RNA polymerase Rpb1, domain 4 LA341_12445 PF04983 RNA polymerase Rpb1, domain 3 LA341_12445 PF00623 RNA polymerase Rpb1, domain 2 LA341_12450 PF04560 RNA polymerase Rpb2, domain 7 LA341_12450 PF00562 RNA polymerase Rpb2, domain 6 LA341_12450 PF10385 RNA polymerase beta subunit external 1 domain LA341_12450 PF04565 RNA polymerase Rpb2, domain 3 LA341_12450 PF04561 RNA polymerase Rpb2, domain 2 LA341_12450 PF04563 RNA polymerase beta subunit LA341_12455 PF16320 Ribosomal protein L7/L12 dimerisation domain LA341_12455 PF00542 Ribosomal protein L7/L12 C-terminal domain LA341_12460 PF00466 Ribosomal protein L10 LA341_12465 PF00687 Ribosomal protein L1p/L10e family LA341_12470 PF00298 Ribosomal protein L11, RNA binding domain LA341_12470 PF03946 Ribosomal protein L11, N-terminal domain LA341_12475 PF00467 KOW motif LA341_12475 PF02357 Transcription termination factor nusG LA341_12480 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LA341_12490 PF00009 Elongation factor Tu GTP binding domain LA341_12490 PF03144 Elongation factor Tu domain 2 LA341_12490 PF03143 Elongation factor Tu C-terminal domain LA341_12510 PF00485 Phosphoribulokinase / Uridine kinase family LA341_12515 PF02237 Biotin protein ligase C terminal domain LA341_12515 PF03099 Biotin/lipoate A/B protein ligase family LA341_12515 PF08279 HTH domain LA341_12520 PF01565 FAD binding domain LA341_12520 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LA341_12525 PF02080 TrkA-C domain LA341_12525 PF02254 TrkA-N domain LA341_12530 PF02386 Cation transport protein LA341_12550 PF01131 DNA topoisomerase LA341_12550 PF01751 Toprim domain LA341_12560 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_12560 PF00512 His Kinase A (phospho-acceptor) domain LA341_12560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_12565 PF03264 NapC/NirT cytochrome c family, N-terminal region LA341_12570 PF18364 Molybdopterin oxidoreductase N-terminal domain LA341_12570 PF00384 Molybdopterin oxidoreductase LA341_12570 PF01568 Molydopterin dinucleotide binding domain LA341_12580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_12585 PF00486 Transcriptional regulatory protein, C terminal LA341_12585 PF00072 Response regulator receiver domain LA341_12600 PF01794 Ferric reductase like transmembrane component LA341_12605 PF00174 Oxidoreductase molybdopterin binding domain LA341_12615 PF00158 Sigma-54 interaction domain LA341_12615 PF00072 Response regulator receiver domain LA341_12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_12625 PF00512 His Kinase A (phospho-acceptor) domain LA341_12645 PF00571 CBS domain LA341_12645 PF01368 DHH family LA341_12645 PF02272 DHHA1 domain LA341_12645 PF01743 Poly A polymerase head domain LA341_12650 PF10063 Uncharacterized integral membrane protein (DUF2301) LA341_12660 PF01037 Lrp/AsnC ligand binding domain LA341_12665 PF03590 Aspartate-ammonia ligase LA341_12670 PF10431 C-terminal, D2-small domain, of ClpB protein LA341_12670 PF02861 Clp amino terminal domain, pathogenicity island component LA341_12670 PF00004 ATPase family associated with various cellular activities (AAA) LA341_12670 PF07724 AAA domain (Cdc48 subfamily) LA341_12670 PF17871 AAA lid domain LA341_12675 PF02578 Multi-copper polyphenol oxidoreductase laccase LA341_12680 PF00849 RNA pseudouridylate synthase LA341_12680 PF01479 S4 domain LA341_12685 PF13525 Outer membrane lipoprotein LA341_12690 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_12690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA341_12695 PF00375 Sodium:dicarboxylate symporter family LA341_12700 PF03313 Serine dehydratase alpha chain LA341_12705 PF02899 Phage integrase, N-terminal SAM-like domain LA341_12705 PF00589 Phage integrase family LA341_12775 PF00929 Exonuclease LA341_12860 PF01258 Prokaryotic dksA/traR C4-type zinc finger LA341_12935 PF02233 NAD(P) transhydrogenase beta subunit LA341_12940 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LA341_12940 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LA341_12940 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LA341_12945 PF00465 Iron-containing alcohol dehydrogenase LA341_12950 PF12833 Helix-turn-helix domain LA341_12950 PF06719 AraC-type transcriptional regulator N-terminus LA341_12955 PF08212 Lipocalin-like domain LA341_12960 PF02743 Cache domain LA341_12960 PF00672 HAMP domain LA341_12960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_12975 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA341_12975 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA341_12980 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LA341_12980 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LA341_12985 PF01316 Arginine repressor, DNA binding domain LA341_12985 PF02863 Arginine repressor, C-terminal domain LA341_12990 PF03606 C4-dicarboxylate anaerobic carrier LA341_12995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA341_12995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA341_13000 PF00696 Amino acid kinase family LA341_13025 PF04055 Radical SAM superfamily LA341_13025 PF06969 HemN C-terminal domain LA341_13030 PF10675 Protein of unknown function (DUF2489) LA341_13035 PF04220 Der GTPase activator (YihI) LA341_13040 PF00034 Cytochrome c LA341_13045 PF01926 50S ribosome-binding GTPase LA341_13055 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LA341_13055 PF01488 Shikimate / quinate 5-dehydrogenase LA341_13055 PF08501 Shikimate dehydrogenase substrate binding domain LA341_13060 PF01218 Coproporphyrinogen III oxidase LA341_13065 PF01300 Telomere recombination LA341_13070 PF01396 Topoisomerase DNA binding C4 zinc finger LA341_13075 PF04361 Protein of unknown function (DUF494) LA341_13080 PF17782 DprA winged helix domain LA341_13080 PF02481 DNA recombination-mediator protein A LA341_13085 PF01476 LysM domain LA341_13090 PF01327 Polypeptide deformylase LA341_13095 PF02911 Formyl transferase, C-terminal domain LA341_13095 PF00551 Formyl transferase LA341_13100 PF01029 NusB family LA341_13100 PF01189 16S rRNA methyltransferase RsmB/F LA341_13105 PF02080 TrkA-C domain LA341_13105 PF02254 TrkA-N domain LA341_13110 PF02386 Cation transport protein LA341_13115 PF00679 Elongation factor G C-terminus LA341_13115 PF00009 Elongation factor Tu GTP binding domain LA341_13115 PF03144 Elongation factor Tu domain 2 LA341_13120 PF03951 Glutamine synthetase, beta-Grasp domain LA341_13120 PF00120 Glutamine synthetase, catalytic domain LA341_13130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_13130 PF00989 PAS fold LA341_13130 PF00512 His Kinase A (phospho-acceptor) domain LA341_13135 PF02954 Bacterial regulatory protein, Fis family LA341_13135 PF00072 Response regulator receiver domain LA341_13135 PF00158 Sigma-54 interaction domain LA341_13140 PF00962 Adenosine/AMP deaminase LA341_13150 PF02646 RmuC family LA341_13165 PF02082 Transcriptional regulator LA341_13170 PF00294 pfkB family carbohydrate kinase LA341_13175 PF03466 LysR substrate binding domain LA341_13175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_13180 PF00958 GMP synthase C terminal domain LA341_13180 PF02540 NAD synthase LA341_13180 PF00117 Glutamine amidotransferase class-I LA341_13185 PF00171 Aldehyde dehydrogenase family LA341_13190 PF00202 Aminotransferase class-III LA341_13195 PF01381 Helix-turn-helix LA341_13195 PF07883 Cupin domain LA341_13200 PF00171 Aldehyde dehydrogenase family LA341_13210 PF00892 EamA-like transporter family LA341_13215 PF12833 Helix-turn-helix domain LA341_13220 PF01810 LysE type translocator LA341_13225 PF04143 Sulphur transport LA341_13230 PF01389 OmpA-like transmembrane domain LA341_13230 PF00691 OmpA family LA341_13235 PF00440 Bacterial regulatory proteins, tetR family LA341_13245 PF00585 C-terminal regulatory domain of Threonine dehydratase LA341_13245 PF00291 Pyridoxal-phosphate dependent enzyme LA341_13250 PF00920 Dehydratase family LA341_13255 PF01063 Amino-transferase class IV LA341_13265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA341_13265 PF00205 Thiamine pyrophosphate enzyme, central domain LA341_13265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LA341_13270 PF13335 Magnesium chelatase, subunit ChlI C-terminal LA341_13270 PF01078 Magnesium chelatase, subunit ChlI LA341_13275 PF01553 Acyltransferase LA341_13280 PF01553 Acyltransferase LA341_13285 PF04463 Protein of unknown function (DUF523) LA341_13295 PF00857 Isochorismatase family LA341_13300 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LA341_13300 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LA341_13310 PF00005 ABC transporter LA341_13315 PF00528 Binding-protein-dependent transport system inner membrane component LA341_13320 PF01323 DSBA-like thioredoxin domain LA341_13325 PF01636 Phosphotransferase enzyme family LA341_13330 PF12801 4Fe-4S binding domain LA341_13330 PF13746 4Fe-4S dicluster domain LA341_13330 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LA341_13335 PF06288 Protein of unknown function (DUF1040) LA341_13340 PF00360 Phytochrome region LA341_13340 PF00990 Diguanylate cyclase, GGDEF domain LA341_13340 PF01590 GAF domain LA341_13340 PF00563 EAL domain LA341_13345 PF00376 MerR family regulatory protein LA341_13345 PF09278 MerR, DNA binding LA341_13350 PF00403 Heavy-metal-associated domain LA341_13355 PF00156 Phosphoribosyl transferase domain LA341_13360 PF01138 3' exoribonuclease family, domain 1 LA341_13360 PF03725 3' exoribonuclease family, domain 2 LA341_13365 PF08340 Domain of unknown function (DUF1732) LA341_13365 PF03755 YicC-like family, N-terminal region LA341_13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_13370 PF03466 LysR substrate binding domain LA341_13375 PF00107 Zinc-binding dehydrogenase LA341_13375 PF08240 Alcohol dehydrogenase GroES-like domain LA341_13380 PF00756 Putative esterase LA341_13390 PF12867 DinB superfamily LA341_13390 PF03781 Sulfatase-modifying factor enzyme 1 LA341_13395 PF13593 SBF-like CPA transporter family (DUF4137) LA341_13400 PF13520 Amino acid permease LA341_13405 PF01588 Putative tRNA binding domain LA341_13410 PF13520 Amino acid permease LA341_13415 PF04074 YhcH/YjgK/YiaL LA341_13420 PF00703 Glycosyl hydrolases family 2 LA341_13420 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LA341_13420 PF16353 Domain of unknown function(DUF4981) LA341_13420 PF02837 Glycosyl hydrolases family 2, sugar binding domain LA341_13420 PF02929 Beta galactosidase small chain LA341_13425 PF00356 Bacterial regulatory proteins, lacI family LA341_13460 PF00132 Bacterial transferase hexapeptide (six repeats) LA341_13465 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LA341_13465 PF00476 DNA polymerase family A LA341_13465 PF01612 3'-5' exonuclease LA341_13465 PF01367 5'-3' exonuclease, C-terminal SAM fold LA341_13475 PF06005 Cell division protein ZapB LA341_13485 PF00132 Bacterial transferase hexapeptide (six repeats) LA341_13485 PF06426 Serine acetyltransferase, N-terminal LA341_13490 PF01545 Cation efflux family LA341_13490 PF16916 Dimerisation domain of Zinc Transporter LA341_13495 PF00072 Response regulator receiver domain LA341_13495 PF00486 Transcriptional regulatory protein, C terminal LA341_13500 PF16527 Two-component sensor protein CpxA, periplasmic domain LA341_13500 PF00672 HAMP domain LA341_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_13500 PF00512 His Kinase A (phospho-acceptor) domain LA341_13505 PF00588 SpoU rRNA Methylase family LA341_13510 PF01554 MatE LA341_13515 PF02630 SCO1/SenC LA341_13520 PF02653 Branched-chain amino acid transport system / permease component LA341_13525 PF02653 Branched-chain amino acid transport system / permease component LA341_13530 PF00005 ABC transporter LA341_13535 PF02608 ABC transporter substrate-binding protein PnrA-like LA341_13540 PF00580 UvrD/REP helicase N-terminal domain LA341_13540 PF13361 UvrD-like helicase C-terminal domain LA341_13580 PF14001 YdfZ protein LA341_13620 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) LA341_13625 PF13439 Glycosyltransferase Family 4 LA341_13625 PF00534 Glycosyl transferases group 1 LA341_13640 PF01370 NAD dependent epimerase/dehydratase family LA341_13645 PF08360 QacR-like protein, C-terminal region LA341_13645 PF00440 Bacterial regulatory proteins, tetR family LA341_13650 PF00155 Aminotransferase class I and II LA341_13655 PF08240 Alcohol dehydrogenase GroES-like domain LA341_13655 PF00107 Zinc-binding dehydrogenase LA341_13660 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LA341_13665 PF00990 Diguanylate cyclase, GGDEF domain LA341_13665 PF00563 EAL domain LA341_13665 PF03707 Bacterial signalling protein N terminal repeat LA341_13670 PF00580 UvrD/REP helicase N-terminal domain LA341_13670 PF13361 UvrD-like helicase C-terminal domain LA341_13675 PF00266 Aminotransferase class-V LA341_13680 PF02657 Fe-S metabolism associated domain LA341_13685 PF00899 ThiF family LA341_13720 PF12724 Flavodoxin domain LA341_13725 PF02386 Cation transport protein LA341_13730 PF09186 Domain of unknown function (DUF1949) LA341_13730 PF01205 Uncharacterized protein family UPF0029 LA341_13735 PF00557 Metallopeptidase family M24 LA341_13740 PF00501 AMP-binding enzyme LA341_13740 PF13193 AMP-binding enzyme C-terminal domain LA341_13745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LA341_13745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LA341_13745 PF00378 Enoyl-CoA hydratase/isomerase LA341_13750 PF00108 Thiolase, N-terminal domain LA341_13750 PF02803 Thiolase, C-terminal domain LA341_13755 PF00486 Transcriptional regulatory protein, C terminal LA341_13755 PF00072 Response regulator receiver domain LA341_13760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_13760 PF00672 HAMP domain LA341_13760 PF00512 His Kinase A (phospho-acceptor) domain LA341_13765 PF01547 Bacterial extracellular solute-binding protein LA341_13775 PF01206 Sulfurtransferase TusA LA341_13780 PF01042 Endoribonuclease L-PSP LA341_13785 PF13488 Glycine zipper LA341_13785 PF00691 OmpA family LA341_13790 PF03352 Methyladenine glycosylase LA341_13795 PF02091 Glycyl-tRNA synthetase alpha subunit LA341_13800 PF05746 DALR anticodon binding domain LA341_13800 PF02092 Glycyl-tRNA synthetase beta subunit LA341_13820 PF03222 Tryptophan/tyrosine permease family LA341_13825 PF12801 4Fe-4S binding domain LA341_13830 PF00356 Bacterial regulatory proteins, lacI family LA341_13835 PF13458 Periplasmic binding protein LA341_13840 PF02653 Branched-chain amino acid transport system / permease component LA341_13845 PF02653 Branched-chain amino acid transport system / permease component LA341_13845 PF11862 Domain of unknown function (DUF3382) LA341_13850 PF12399 Branched-chain amino acid ATP-binding cassette transporter LA341_13850 PF00005 ABC transporter LA341_13855 PF00005 ABC transporter LA341_13870 PF00581 Rhodanese-like domain LA341_13875 PF01694 Rhomboid family LA341_13875 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LA341_13880 PF04380 Membrane fusogenic activity LA341_13885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_13885 PF00672 HAMP domain LA341_13885 PF00072 Response regulator receiver domain LA341_13885 PF01627 Hpt domain LA341_13885 PF00512 His Kinase A (phospho-acceptor) domain LA341_13885 PF17149 Periplasmic sensor domain found in signal transduction proteins LA341_13890 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_13890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA341_13895 PF03814 Potassium-transporting ATPase A subunit LA341_13905 PF02669 K+-transporting ATPase, c chain LA341_13910 PF13493 Domain of unknown function (DUF4118) LA341_13910 PF13492 GAF domain LA341_13910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_13910 PF00512 His Kinase A (phospho-acceptor) domain LA341_13910 PF02702 Osmosensitive K+ channel His kinase sensor domain LA341_13915 PF00072 Response regulator receiver domain LA341_13915 PF00486 Transcriptional regulatory protein, C terminal LA341_13920 PF07690 Major Facilitator Superfamily LA341_13935 PF00155 Aminotransferase class I and II LA341_13940 PF00011 Hsp20/alpha crystallin family LA341_13945 PF00011 Hsp20/alpha crystallin family LA341_13950 PF00204 DNA gyrase B LA341_13950 PF00986 DNA gyrase B subunit, carboxyl terminus LA341_13950 PF18053 DNA gyrase B subunit insert domain LA341_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_13950 PF01751 Toprim domain LA341_13955 PF02463 RecF/RecN/SMC N terminal domain LA341_13960 PF02768 DNA polymerase III beta subunit, C-terminal domain LA341_13960 PF02767 DNA polymerase III beta subunit, central domain LA341_13960 PF00712 DNA polymerase III beta subunit, N-terminal domain LA341_13965 PF00308 Bacterial dnaA protein LA341_13965 PF11638 DnaA N-terminal domain LA341_13965 PF08299 Bacterial dnaA protein helix-turn-helix LA341_13970 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_13975 PF00528 Binding-protein-dependent transport system inner membrane component LA341_13980 PF00005 ABC transporter LA341_13985 PF00468 Ribosomal protein L34 LA341_13990 PF00825 Ribonuclease P LA341_13995 PF01809 Putative membrane protein insertion efficiency factor LA341_14000 PF14849 YidC periplasmic domain LA341_14000 PF02096 60Kd inner membrane protein LA341_14005 PF01926 50S ribosome-binding GTPase LA341_14005 PF10396 GTP-binding protein TrmE N-terminus LA341_14005 PF12631 MnmE helical domain LA341_14010 PF01810 LysE type translocator LA341_14015 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA341_14020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_14020 PF03466 LysR substrate binding domain LA341_14025 PF01032 FecCD transport family LA341_14030 PF01497 Periplasmic binding protein LA341_14035 PF00005 ABC transporter LA341_14040 PF00005 ABC transporter LA341_14045 PF00593 TonB dependent receptor LA341_14045 PF07715 TonB-dependent Receptor Plug Domain LA341_14050 PF00258 Flavodoxin LA341_14055 PF13932 GidA associated domain LA341_14055 PF01134 Glucose inhibited division protein A LA341_14060 PF02527 rRNA small subunit methyltransferase G LA341_14065 PF13614 AAA domain LA341_14070 PF02195 ParB-like nuclease domain LA341_14070 PF17762 HTH domain found in ParB protein LA341_14080 PF00119 ATP synthase A chain LA341_14085 PF00137 ATP synthase subunit C LA341_14090 PF00430 ATP synthase B/B' CF(0) LA341_14095 PF00213 ATP synthase delta (OSCP) subunit LA341_14100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA341_14100 PF00306 ATP synthase alpha/beta chain, C terminal domain LA341_14100 PF02874 ATP synthase alpha/beta family, beta-barrel domain LA341_14105 PF00231 ATP synthase LA341_14110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA341_14110 PF02874 ATP synthase alpha/beta family, beta-barrel domain LA341_14115 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LA341_14115 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LA341_14120 PF00132 Bacterial transferase hexapeptide (six repeats) LA341_14120 PF14602 Hexapeptide repeat of succinyl-transferase LA341_14120 PF12804 MobA-like NTP transferase domain LA341_14125 PF06123 Inner membrane protein CreD LA341_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_14130 PF00672 HAMP domain LA341_14130 PF00512 His Kinase A (phospho-acceptor) domain LA341_14135 PF00486 Transcriptional regulatory protein, C terminal LA341_14135 PF00072 Response regulator receiver domain LA341_14140 PF08220 DeoR-like helix-turn-helix domain LA341_14140 PF00455 DeoR C terminal sensor domain LA341_14145 PF01380 SIS domain LA341_14150 PF03472 Autoinducer binding domain LA341_14150 PF00196 Bacterial regulatory proteins, luxR family LA341_14160 PF01618 MotA/TolQ/ExbB proton channel family LA341_14165 PF01618 MotA/TolQ/ExbB proton channel family LA341_14170 PF02472 Biopolymer transport protein ExbD/TolR LA341_14175 PF03544 Gram-negative bacterial TonB protein C-terminal LA341_14210 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LA341_14215 PF07969 Amidohydrolase family LA341_14220 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LA341_14225 PF01209 ubiE/COQ5 methyltransferase family LA341_14230 PF02036 SCP-2 sterol transfer family LA341_14235 PF03109 ABC1 family LA341_14240 PF02416 mttA/Hcf106 family LA341_14245 PF02416 mttA/Hcf106 family LA341_14250 PF00902 Sec-independent protein translocase protein (TatC) LA341_14255 PF01026 TatD related DNase LA341_14260 PF00490 Delta-aminolevulinic acid dehydratase LA341_14265 PF01432 Peptidase family M3 LA341_14270 PF00563 EAL domain LA341_14270 PF00990 Diguanylate cyclase, GGDEF domain LA341_14270 PF03707 Bacterial signalling protein N terminal repeat LA341_14275 PF04445 Putative SAM-dependent methyltransferase LA341_14285 PF02541 Ppx/GppA phosphatase family LA341_14290 PF00270 DEAD/DEAH box helicase LA341_14290 PF00271 Helicase conserved C-terminal domain LA341_14295 PF00085 Thioredoxin LA341_14300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA341_14300 PF07497 Rho termination factor, RNA-binding domain LA341_14300 PF07498 Rho termination factor, N-terminal domain LA341_14310 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LA341_14315 PF00175 Oxidoreductase NAD-binding domain LA341_14320 PF00873 AcrB/AcrD/AcrF family LA341_14325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_14330 PF00440 Bacterial regulatory proteins, tetR family LA341_14360 PF00224 Pyruvate kinase, barrel domain LA341_14360 PF02887 Pyruvate kinase, alpha/beta domain LA341_14365 PF07690 Major Facilitator Superfamily LA341_14375 PF00512 His Kinase A (phospho-acceptor) domain LA341_14375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_14375 PF00672 HAMP domain LA341_14380 PF14532 Sigma-54 interaction domain LA341_14380 PF00072 Response regulator receiver domain LA341_14380 PF02954 Bacterial regulatory protein, Fis family LA341_14385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_14385 PF00672 HAMP domain LA341_14385 PF02743 Cache domain LA341_14400 PF12146 Serine aminopeptidase, S33 LA341_14405 PF00132 Bacterial transferase hexapeptide (six repeats) LA341_14410 PF00588 SpoU rRNA Methylase family LA341_14410 PF12105 SpoU, rRNA methylase, C-terminal LA341_14415 PF13291 ACT domain LA341_14415 PF02824 TGS domain LA341_14415 PF04607 Region found in RelA / SpoT proteins LA341_14420 PF01192 RNA polymerase Rpb6 LA341_14425 PF00625 Guanylate kinase LA341_14430 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LA341_14445 PF00892 EamA-like transporter family LA341_14465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_14465 PF03466 LysR substrate binding domain LA341_14470 PF00579 tRNA synthetases class I (W and Y) LA341_14475 PF00582 Universal stress protein family LA341_14480 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LA341_14480 PF07055 Enoyl reductase FAD binding domain LA341_14480 PF12241 Trans-2-enoyl-CoA reductase catalytic region LA341_14485 PF00210 Ferritin-like domain LA341_14495 PF01810 LysE type translocator LA341_14500 PF07694 5TMR of 5TMR-LYT LA341_14500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_14500 PF06580 Histidine kinase LA341_14505 PF04397 LytTr DNA-binding domain LA341_14505 PF00072 Response regulator receiver domain LA341_14510 PF07690 Major Facilitator Superfamily LA341_14515 PF02222 ATP-grasp domain LA341_14515 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LA341_14520 PF00731 AIR carboxylase LA341_14535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_14535 PF03466 LysR substrate binding domain LA341_14540 PF00593 TonB dependent receptor LA341_14540 PF07715 TonB-dependent Receptor Plug Domain LA341_14545 PF01177 Asp/Glu/Hydantoin racemase LA341_14575 PF13380 CoA binding domain LA341_14575 PF13607 Succinyl-CoA ligase like flavodoxin domain LA341_14575 PF00583 Acetyltransferase (GNAT) family LA341_14590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_14590 PF03466 LysR substrate binding domain LA341_14595 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LA341_14595 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LA341_14600 PF00342 Phosphoglucose isomerase LA341_14605 PF00924 Mechanosensitive ion channel LA341_14605 PF05552 Conserved TM helix LA341_14610 PF00440 Bacterial regulatory proteins, tetR family LA341_14615 PF00692 dUTPase LA341_14620 PF04127 DNA / pantothenate metabolism flavoprotein LA341_14620 PF02441 Flavoprotein LA341_14625 PF04002 RadC-like JAB domain LA341_14630 PF00830 Ribosomal L28 family LA341_14635 PF00471 Ribosomal protein L33 LA341_14645 PF06827 Zinc finger found in FPG and IleRS LA341_14645 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LA341_14645 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LA341_14650 PF04393 Protein of unknown function (DUF535) LA341_14655 PF01467 Cytidylyltransferase-like LA341_14660 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LA341_14665 PF00535 Glycosyl transferase family 2 LA341_14670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LA341_14675 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LA341_14680 PF08240 Alcohol dehydrogenase GroES-like domain LA341_14680 PF00107 Zinc-binding dehydrogenase LA341_14695 PF03748 Flagellar basal body-associated protein FliL LA341_14700 PF04345 Chorismate lyase LA341_14705 PF01040 UbiA prenyltransferase family LA341_14710 PF01553 Acyltransferase LA341_14715 PF00717 Peptidase S24-like LA341_14715 PF01726 LexA DNA binding domain LA341_14725 PF03448 MgtE intracellular N domain LA341_14725 PF01769 Divalent cation transporter LA341_14725 PF00571 CBS domain LA341_14730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA341_14730 PF10414 Sirohaem synthase dimerisation region LA341_14730 PF14824 Sirohaem biosynthesis protein central LA341_14735 PF01226 Formate/nitrite transporter LA341_14740 PF13806 Rieske-like [2Fe-2S] domain LA341_14750 PF04324 BFD-like [2Fe-2S] binding domain LA341_14750 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LA341_14750 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LA341_14750 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_14750 PF18267 Rubredoxin NAD+ reductase C-terminal domain LA341_14765 PF00005 ABC transporter LA341_14770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_14780 PF00004 ATPase family associated with various cellular activities (AAA) LA341_14780 PF07724 AAA domain (Cdc48 subfamily) LA341_14780 PF10431 C-terminal, D2-small domain, of ClpB protein LA341_14785 PF00227 Proteasome subunit LA341_14795 PF05746 DALR anticodon binding domain LA341_14795 PF03485 Arginyl tRNA synthetase N terminal domain LA341_14795 PF00750 tRNA synthetases class I (R) LA341_14800 PF02673 Bacitracin resistance protein BacA LA341_14805 PF01263 Aldose 1-epimerase LA341_14810 PF08544 GHMP kinases C terminal LA341_14810 PF10509 Galactokinase galactose-binding signature LA341_14810 PF00288 GHMP kinases N terminal domain LA341_14815 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LA341_14815 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LA341_14820 PF16363 GDP-mannose 4,6 dehydratase LA341_14825 PF00356 Bacterial regulatory proteins, lacI family LA341_14830 PF16353 Domain of unknown function(DUF4981) LA341_14830 PF00703 Glycosyl hydrolases family 2 LA341_14830 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LA341_14830 PF02837 Glycosyl hydrolases family 2, sugar binding domain LA341_14830 PF02929 Beta galactosidase small chain LA341_14835 PF13407 Periplasmic binding protein domain LA341_14840 PF00005 ABC transporter LA341_14845 PF02653 Branched-chain amino acid transport system / permease component LA341_14850 PF05958 tRNA (Uracil-5-)-methyltransferase LA341_14865 PF02903 Alpha amylase, N-terminal ig-like domain LA341_14865 PF00128 Alpha amylase, catalytic domain LA341_14880 PF09940 Domain of unknown function (DUF2172) LA341_14880 PF16254 Domain of unknown function (DUF4910) LA341_14880 PF16221 winged helix-turn-helix LA341_14890 PF00012 Hsp70 protein LA341_14895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA341_14895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA341_14905 PF05981 CreA protein LA341_14915 PF01258 Prokaryotic dksA/traR C4-type zinc finger LA341_14920 PF00120 Glutamine synthetase, catalytic domain LA341_14925 PF00202 Aminotransferase class-III LA341_14930 PF13416 Bacterial extracellular solute-binding protein LA341_14935 PF13416 Bacterial extracellular solute-binding protein LA341_14940 PF00005 ABC transporter LA341_14940 PF08402 TOBE domain LA341_14945 PF00528 Binding-protein-dependent transport system inner membrane component LA341_14950 PF00528 Binding-protein-dependent transport system inner membrane component LA341_14955 PF03475 3-alpha domain LA341_14955 PF03473 MOSC domain LA341_14970 PF03061 Thioesterase superfamily LA341_14975 PF09382 RQC domain LA341_14975 PF16124 RecQ zinc-binding LA341_14975 PF00570 HRDC domain LA341_14975 PF00271 Helicase conserved C-terminal domain LA341_14975 PF00270 DEAD/DEAH box helicase LA341_14980 PF00034 Cytochrome c LA341_14985 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LA341_14995 PF02592 Putative vitamin uptake transporter LA341_15000 PF03737 Aldolase/RraA LA341_15010 PF01197 Ribosomal protein L31 LA341_15015 PF00270 DEAD/DEAH box helicase LA341_15015 PF17764 3′ DNA-binding domain (3′BD) LA341_15015 PF18074 Primosomal protein N C-terminal domain LA341_15015 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LA341_15015 PF00271 Helicase conserved C-terminal domain LA341_15025 PF11066 Protein of unknown function (DUF2867) LA341_15025 PF13460 NAD(P)H-binding LA341_15030 PF00390 Malic enzyme, N-terminal domain LA341_15030 PF03949 Malic enzyme, NAD binding domain LA341_15035 PF03631 Virulence factor BrkB LA341_15040 PF02580 D-Tyr-tRNA(Tyr) deacylase LA341_15045 PF00398 Ribosomal RNA adenine dimethylase LA341_15050 PF00583 Acetyltransferase (GNAT) family LA341_15050 PF09500 Putative thioesterase (yiiD_Cterm) LA341_15060 PF00270 DEAD/DEAH box helicase LA341_15060 PF00271 Helicase conserved C-terminal domain LA341_15060 PF17191 RecG wedge domain LA341_15065 PF13091 PLD-like domain LA341_15070 PF02447 GntP family permease LA341_15075 PF01202 Shikimate kinase LA341_15080 PF00920 Dehydratase family LA341_15085 PF01081 KDPG and KHG aldolase LA341_15090 PF00356 Bacterial regulatory proteins, lacI family LA341_15090 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LA341_15100 PF01551 Peptidase family M23 LA341_15105 PF01676 Metalloenzyme superfamily LA341_15105 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LA341_15110 PF00581 Rhodanese-like domain LA341_15115 PF02556 Preprotein translocase subunit SecB LA341_15120 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LA341_15120 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LA341_15125 PF01521 Iron-sulphur cluster biosynthesis LA341_15125 PF01106 NifU-like domain LA341_15130 PF00156 Phosphoribosyl transferase domain LA341_15135 PF00561 alpha/beta hydrolase fold LA341_15155 PF09371 Tex-like protein N-terminal domain LA341_15155 PF00575 S1 RNA binding domain LA341_15155 PF16921 Tex protein YqgF-like domain LA341_15155 PF17674 HHH domain LA341_15160 PF01272 Transcription elongation factor, GreA/GreB, C-term LA341_15160 PF03449 Transcription elongation factor, N-terminal LA341_15165 PF00072 Response regulator receiver domain LA341_15165 PF00486 Transcriptional regulatory protein, C terminal LA341_15170 PF00672 HAMP domain LA341_15170 PF00512 His Kinase A (phospho-acceptor) domain LA341_15170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_15180 PF00338 Ribosomal protein S10p/S20e LA341_15185 PF00297 Ribosomal protein L3 LA341_15190 PF00573 Ribosomal protein L4/L1 family LA341_15195 PF00276 Ribosomal protein L23 LA341_15200 PF00181 Ribosomal Proteins L2, RNA binding domain LA341_15200 PF03947 Ribosomal Proteins L2, C-terminal domain LA341_15205 PF00203 Ribosomal protein S19 LA341_15210 PF00237 Ribosomal protein L22p/L17e LA341_15215 PF07650 KH domain LA341_15215 PF00189 Ribosomal protein S3, C-terminal domain LA341_15220 PF00252 Ribosomal protein L16p/L10e LA341_15225 PF00831 Ribosomal L29 protein LA341_15230 PF00366 Ribosomal protein S17 LA341_15235 PF00238 Ribosomal protein L14p/L23e LA341_15240 PF00467 KOW motif LA341_15240 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LA341_15245 PF00281 Ribosomal protein L5 LA341_15245 PF00673 ribosomal L5P family C-terminus LA341_15250 PF00253 Ribosomal protein S14p/S29e LA341_15255 PF00410 Ribosomal protein S8 LA341_15260 PF00347 Ribosomal protein L6 LA341_15265 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LA341_15270 PF03719 Ribosomal protein S5, C-terminal domain LA341_15270 PF00333 Ribosomal protein S5, N-terminal domain LA341_15275 PF00327 Ribosomal protein L30p/L7e LA341_15280 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LA341_15285 PF00344 SecY translocase LA341_15290 PF00444 Ribosomal protein L36 LA341_15295 PF00416 Ribosomal protein S13/S18 LA341_15300 PF00411 Ribosomal protein S11 LA341_15305 PF00163 Ribosomal protein S4/S9 N-terminal domain LA341_15305 PF01479 S4 domain LA341_15310 PF01000 RNA polymerase Rpb3/RpoA insert domain LA341_15310 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LA341_15310 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LA341_15315 PF01196 Ribosomal protein L17 LA341_15345 PF07715 TonB-dependent Receptor Plug Domain LA341_15345 PF00593 TonB dependent receptor LA341_15350 PF00672 HAMP domain LA341_15350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_15350 PF00512 His Kinase A (phospho-acceptor) domain LA341_15355 PF00072 Response regulator receiver domain LA341_15355 PF00486 Transcriptional regulatory protein, C terminal LA341_15365 PF03466 LysR substrate binding domain LA341_15365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_15375 PF17954 Quercetinase C-terminal cupin domain LA341_15375 PF02678 Pirin LA341_15380 PF07681 DoxX LA341_15385 PF17946 RecC C-terminal domain LA341_15390 PF12705 PD-(D/E)XK nuclease superfamily LA341_15390 PF13361 UvrD-like helicase C-terminal domain LA341_15390 PF00580 UvrD/REP helicase N-terminal domain LA341_15395 PF13538 UvrD-like helicase C-terminal domain LA341_15415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA341_15425 PF00990 Diguanylate cyclase, GGDEF domain LA341_15430 PF03606 C4-dicarboxylate anaerobic carrier LA341_15440 PF07702 UTRA domain LA341_15440 PF00392 Bacterial regulatory proteins, gntR family LA341_15455 PF00528 Binding-protein-dependent transport system inner membrane component LA341_15465 PF00005 ABC transporter LA341_15465 PF08402 TOBE domain LA341_15475 PF00990 Diguanylate cyclase, GGDEF domain LA341_15490 PF01053 Cys/Met metabolism PLP-dependent enzyme LA341_15500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_15500 PF12793 Sugar transport-related sRNA regulator N-term LA341_15505 PF00141 Peroxidase LA341_15520 PF01479 S4 domain LA341_15520 PF00579 tRNA synthetases class I (W and Y) LA341_15525 PF00196 Bacterial regulatory proteins, luxR family LA341_15530 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA341_15545 PF00199 Catalase LA341_15545 PF06628 Catalase-related immune-responsive LA341_15550 PF00583 Acetyltransferase (GNAT) family LA341_15565 PF00133 tRNA synthetases class I (I, L, M and V) LA341_15565 PF08264 Anticodon-binding domain of tRNA LA341_15565 PF10458 Valyl tRNA synthetase tRNA binding arm LA341_15570 PF04364 DNA polymerase III chi subunit, HolC LA341_15575 PF02789 Cytosol aminopeptidase family, N-terminal domain LA341_15575 PF00883 Cytosol aminopeptidase family, catalytic domain LA341_15580 PF03739 Lipopolysaccharide export system permease LptF/LptG LA341_15585 PF03739 Lipopolysaccharide export system permease LptF/LptG LA341_15605 PF00593 TonB dependent receptor LA341_15605 PF07715 TonB-dependent Receptor Plug Domain LA341_15615 PF00768 D-alanyl-D-alanine carboxypeptidase LA341_15625 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LA341_15640 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LA341_15645 PF02602 Uroporphyrinogen-III synthase HemD LA341_15650 PF03900 Porphobilinogen deaminase, C-terminal domain LA341_15650 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LA341_15655 PF01295 Adenylate cyclase, class-I LA341_15655 PF12633 Adenylate cyclase NT domain LA341_15660 PF02230 Phospholipase/Carboxylesterase LA341_15665 PF01491 Frataxin-like domain LA341_15675 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LA341_15675 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LA341_15680 PF01678 Diaminopimelate epimerase LA341_15690 PF02899 Phage integrase, N-terminal SAM-like domain LA341_15690 PF00589 Phage integrase family LA341_15695 PF13419 Haloacid dehalogenase-like hydrolase LA341_15700 PF00924 Mechanosensitive ion channel LA341_15710 PF07722 Peptidase C26 LA341_15715 PF04751 Protein of unknown function (DUF615) LA341_15720 PF01523 Putative modulator of DNA gyrase LA341_15725 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LA341_15730 PF01722 BolA-like protein LA341_15740 PF05494 MlaC protein LA341_15745 PF02470 MlaD protein LA341_15750 PF02405 Permease MlaE LA341_15755 PF00005 ABC transporter LA341_15760 PF00571 CBS domain LA341_15760 PF01380 SIS domain LA341_15770 PF06835 Lipopolysaccharide-assembly, LptC-related LA341_15775 PF03968 OstA-like protein LA341_15780 PF00005 ABC transporter LA341_15780 PF12399 Branched-chain amino acid ATP-binding cassette transporter LA341_15785 PF04963 Sigma-54 factor, core binding domain LA341_15785 PF04552 Sigma-54, DNA binding domain LA341_15785 PF00309 Sigma-54 factor, Activator interacting domain (AID) LA341_15790 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LA341_15795 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA341_15800 PF03668 P-loop ATPase protein family LA341_15805 PF00381 PTS HPr component phosphorylation site LA341_15810 PF13180 PDZ domain LA341_15815 PF00595 PDZ domain LA341_15815 PF13180 PDZ domain LA341_15825 PF03969 AFG1-like ATPase LA341_15830 PF00572 Ribosomal protein L13 LA341_15835 PF00380 Ribosomal protein S9/S16 LA341_15840 PF00355 Rieske [2Fe-2S] domain LA341_15840 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LA341_15845 PF00032 Cytochrome b(C-terminal)/b6/petD LA341_15845 PF00033 Cytochrome b/b6/petB LA341_15850 PF02167 Cytochrome C1 family LA341_15855 PF02798 Glutathione S-transferase, N-terminal domain LA341_15855 PF00043 Glutathione S-transferase, C-terminal domain LA341_15860 PF04386 Stringent starvation protein B LA341_15865 PF04972 BON domain LA341_15870 PF13580 SIS domain LA341_15875 PF02021 Uncharacterised protein family UPF0102 LA341_15880 PF04348 LppC putative lipoprotein LA341_15885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA341_15900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LA341_15905 PF00813 FliP family LA341_15910 PF01313 Bacterial export proteins, family 3 LA341_15915 PF01311 Bacterial export proteins, family 1 LA341_15920 PF01312 FlhB HrpN YscU SpaS Family LA341_15925 PF00771 FHIPEP family LA341_15930 PF00072 Response regulator receiver domain LA341_15930 PF00158 Sigma-54 interaction domain LA341_15930 PF02954 Bacterial regulatory protein, Fis family LA341_15935 PF02049 Flagellar hook-basal body complex protein FliE LA341_15940 PF08345 Flagellar M-ring protein C-terminal LA341_15940 PF01514 Secretory protein of YscJ/FliF family LA341_15945 PF01706 FliG C-terminal domain LA341_15945 PF14841 FliG middle domain LA341_15945 PF14842 FliG N-terminal domain LA341_15955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA341_15955 PF18269 T3SS EscN ATPase C-terminal domain LA341_15980 PF00460 Flagella basal body rod protein LA341_15985 PF00460 Flagella basal body rod protein LA341_15985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_15990 PF03963 Flagellar hook capping protein - N-terminal region LA341_15990 PF13860 FlgD Ig-like domain LA341_15990 PF13861 FlgD Tudor-like domain LA341_15995 PF07559 Flagellar basal body protein FlaE LA341_15995 PF00460 Flagella basal body rod protein LA341_15995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_16000 PF00460 Flagella basal body rod protein LA341_16000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_16005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_16005 PF00460 Flagella basal body rod protein LA341_16010 PF02107 Flagellar L-ring protein LA341_16015 PF02119 Flagellar P-ring protein LA341_16025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA341_16025 PF00460 Flagella basal body rod protein LA341_16050 PF00669 Bacterial flagellin N-terminal helical region LA341_16050 PF00700 Bacterial flagellin C-terminal helical region LA341_16055 PF07195 Flagellar hook-associated protein 2 C-terminus LA341_16055 PF02465 Flagellar hook-associated protein 2 N-terminus LA341_16055 PF07196 Flagellin hook IN motif LA341_16060 PF02561 Flagellar protein FliS LA341_16080 PF04542 Sigma-70 region 2 LA341_16080 PF04545 Sigma-70, region 4 LA341_16085 PF01618 MotA/TolQ/ExbB proton channel family LA341_16090 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA341_16090 PF00691 OmpA family LA341_16100 PF01464 Transglycosylase SLT domain LA341_16100 PF01476 LysM domain LA341_16110 PF02381 MraZ protein, putative antitoxin-like LA341_16115 PF01795 MraW methylase family LA341_16120 PF04999 Cell division protein FtsL LA341_16125 PF00905 Penicillin binding protein transpeptidase domain LA341_16125 PF03717 Penicillin-binding Protein dimerisation domain LA341_16130 PF01225 Mur ligase family, catalytic domain LA341_16130 PF02875 Mur ligase family, glutamate ligase domain LA341_16130 PF08245 Mur ligase middle domain LA341_16135 PF01225 Mur ligase family, catalytic domain LA341_16135 PF02875 Mur ligase family, glutamate ligase domain LA341_16135 PF08245 Mur ligase middle domain LA341_16140 PF00953 Glycosyl transferase family 4 LA341_16140 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LA341_16145 PF08245 Mur ligase middle domain LA341_16145 PF02875 Mur ligase family, glutamate ligase domain LA341_16150 PF01098 Cell cycle protein LA341_16155 PF04101 Glycosyltransferase family 28 C-terminal domain LA341_16155 PF03033 Glycosyltransferase family 28 N-terminal domain LA341_16160 PF01225 Mur ligase family, catalytic domain LA341_16160 PF02875 Mur ligase family, glutamate ligase domain LA341_16160 PF08245 Mur ligase middle domain LA341_16165 PF03799 Cell division protein FtsQ LA341_16165 PF08478 POTRA domain, FtsQ-type LA341_16170 PF02491 SHS2 domain inserted in FTSA LA341_16175 PF12327 FtsZ family, C-terminal domain LA341_16175 PF00091 Tubulin/FtsZ family, GTPase domain LA341_16180 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LA341_16190 PF02810 SEC-C motif LA341_16190 PF07517 SecA DEAD-like domain LA341_16190 PF01043 SecA preprotein cross-linking domain LA341_16190 PF07516 SecA Wing and Scaffold domain LA341_16195 PF00293 NUDIX domain LA341_16200 PF03884 DNA gyrase inhibitor YacG LA341_16205 PF07072 Cell division protein LA341_16210 PF01121 Dephospho-CoA kinase LA341_16215 PF06750 Bacterial Peptidase A24 N-terminal domain LA341_16215 PF01478 Type IV leader peptidase family LA341_16220 PF00482 Type II secretion system (T2SS), protein F LA341_16225 PF00437 Type II/IV secretion system protein LA341_16225 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LA341_16230 PF07963 Prokaryotic N-terminal methylation motif LA341_16235 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LA341_16235 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LA341_16245 PF01510 N-acetylmuramoyl-L-alanine amidase LA341_16250 PF00392 Bacterial regulatory proteins, gntR family LA341_16250 PF07729 FCD domain LA341_16255 PF17831 Pyruvate dehydrogenase E1 component middle domain LA341_16255 PF00456 Transketolase, thiamine diphosphate binding domain LA341_16260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LA341_16260 PF00364 Biotin-requiring enzyme LA341_16260 PF02817 e3 binding domain LA341_16265 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_16265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA341_16275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_16275 PF00672 HAMP domain LA341_16275 PF12729 Four helix bundle sensory module for signal transduction LA341_16280 PF01734 Patatin-like phospholipase LA341_16285 PF00330 Aconitase family (aconitate hydratase) LA341_16285 PF11791 Aconitate B N-terminal domain LA341_16285 PF06434 Aconitate hydratase 2 N-terminus LA341_16290 PF12792 CSS motif domain associated with EAL LA341_16290 PF00563 EAL domain LA341_16295 PF12792 CSS motif domain associated with EAL LA341_16295 PF00563 EAL domain LA341_16300 PF00999 Sodium/hydrogen exchanger family LA341_16305 PF02607 B12 binding domain LA341_16305 PF02965 Vitamin B12 dependent methionine synthase, activation domain LA341_16305 PF00809 Pterin binding enzyme LA341_16305 PF02574 Homocysteine S-methyltransferase LA341_16305 PF02310 B12 binding domain LA341_16310 PF08443 RimK-like ATP-grasp domain LA341_16310 PF18030 RimK PreATP-grasp domain LA341_16315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_16320 PF00072 Response regulator receiver domain LA341_16320 PF00486 Transcriptional regulatory protein, C terminal LA341_16335 PF01117 Aerolysin toxin LA341_16335 PF03440 Aerolysin/Pertussis toxin (APT) domain LA341_16340 PF13667 ThiC-associated domain LA341_16340 PF01964 Radical SAM ThiC family LA341_16345 PF02581 Thiamine monophosphate synthase LA341_16350 PF00899 ThiF family LA341_16360 PF05690 Thiazole biosynthesis protein ThiG LA341_16365 PF06968 Biotin and Thiamin Synthesis associated domain LA341_16365 PF04055 Radical SAM superfamily LA341_16395 PF00132 Bacterial transferase hexapeptide (six repeats) LA341_16400 PF07670 Nucleoside recognition LA341_16420 PF14698 Argininosuccinate lyase C-terminal LA341_16420 PF00206 Lyase LA341_16425 PF00764 Arginosuccinate synthase LA341_16430 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA341_16430 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA341_16435 PF00696 Amino acid kinase family LA341_16440 PF02774 Semialdehyde dehydrogenase, dimerisation domain LA341_16440 PF01118 Semialdehyde dehydrogenase, NAD binding domain LA341_16445 PF01546 Peptidase family M20/M25/M40 LA341_16445 PF07687 Peptidase dimerisation domain LA341_16450 PF00311 Phosphoenolpyruvate carboxylase LA341_16455 PF00300 Histidine phosphatase superfamily (branch 1) LA341_16460 PF04073 Aminoacyl-tRNA editing domain LA341_16470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_16470 PF03466 LysR substrate binding domain LA341_16475 PF03788 LrgA family LA341_16480 PF04172 LrgB-like family LA341_16490 PF01624 MutS domain I LA341_16490 PF05188 MutS domain II LA341_16490 PF05192 MutS domain III LA341_16490 PF05190 MutS family domain IV LA341_16490 PF00488 MutS domain V LA341_16495 PF02464 Competence-damaged protein LA341_16500 PF00154 recA bacterial DNA recombination protein LA341_16505 PF02631 RecX family LA341_16510 PF02272 DHHA1 domain LA341_16510 PF01411 tRNA synthetases class II (A) LA341_16510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LA341_16515 PF00696 Amino acid kinase family LA341_16515 PF01842 ACT domain LA341_16515 PF13840 ACT domain LA341_16520 PF02599 Global regulator protein family LA341_16555 PF00768 D-alanyl-D-alanine carboxypeptidase LA341_16560 PF09335 SNARE associated Golgi protein LA341_16565 PF00571 CBS domain LA341_16565 PF03471 Transporter associated domain LA341_16565 PF01595 Cyclin M transmembrane N-terminal domain LA341_16570 PF17763 Glutaminase/Asparaginase C-terminal domain LA341_16570 PF00710 Asparaginase, N-terminal LA341_16585 PF00356 Bacterial regulatory proteins, lacI family LA341_16590 PF00367 phosphotransferase system, EIIB LA341_16590 PF02378 Phosphotransferase system, EIIC LA341_16595 PF11941 Domain of unknown function (DUF3459) LA341_16595 PF00128 Alpha amylase, catalytic domain LA341_16600 PF12464 Maltose acetyltransferase LA341_16600 PF14602 Hexapeptide repeat of succinyl-transferase LA341_16610 PF00849 RNA pseudouridylate synthase LA341_16615 PF00271 Helicase conserved C-terminal domain LA341_16615 PF12137 RNA polymerase recycling family C-terminal LA341_16615 PF00176 SNF2 family N-terminal domain LA341_16615 PF18339 RapA N-terminal Tudor like domain 1 LA341_16615 PF18337 RapA N-terminal Tudor like domain LA341_16645 PF04363 Protein of unknown function (DUF496) LA341_16665 PF02464 Competence-damaged protein LA341_16665 PF00994 Probable molybdopterin binding domain LA341_16670 PF00013 KH domain LA341_16670 PF12072 Domain of unknown function (DUF3552) LA341_16670 PF01966 HD domain LA341_16675 PF04204 Homoserine O-succinyltransferase LA341_16685 PF01037 Lrp/AsnC ligand binding domain LA341_16690 PF00884 Sulfatase LA341_16700 PF00128 Alpha amylase, catalytic domain LA341_16700 PF02903 Alpha amylase, N-terminal ig-like domain LA341_16700 PF16657 Maltogenic Amylase, C-terminal domain LA341_16720 PF00106 short chain dehydrogenase LA341_16725 PF03577 Peptidase family C69 LA341_16735 PF00465 Iron-containing alcohol dehydrogenase LA341_16740 PF02142 MGS-like domain LA341_16745 PF00210 Ferritin-like domain LA341_16760 PF05127 Helicase LA341_16760 PF08351 Domain of unknown function (DUF1726) LA341_16760 PF17176 tRNA-binding domain LA341_16760 PF13718 GNAT acetyltransferase 2 LA341_16765 PF02698 DUF218 domain LA341_16770 PF01752 Collagenase LA341_16770 PF08453 Peptidase family M9 N-terminal LA341_16775 PF13193 AMP-binding enzyme C-terminal domain LA341_16775 PF00501 AMP-binding enzyme LA341_16780 PF13378 Enolase C-terminal domain-like LA341_16785 PF00378 Enoyl-CoA hydratase/isomerase LA341_16790 PF12697 Alpha/beta hydrolase family LA341_16795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA341_16795 PF16582 Middle domain of thiamine pyrophosphate LA341_16795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LA341_16800 PF00425 chorismate binding enzyme LA341_16805 PF01040 UbiA prenyltransferase family LA341_16830 PF03880 DbpA RNA binding domain LA341_16830 PF00271 Helicase conserved C-terminal domain LA341_16830 PF00270 DEAD/DEAH box helicase LA341_16835 PF07662 Na+ dependent nucleoside transporter C-terminus LA341_16835 PF07670 Nucleoside recognition LA341_16835 PF01773 Na+ dependent nucleoside transporter N-terminus LA341_16840 PF04307 LexA-binding, inner membrane-associated putative hydrolase LA341_16855 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LA341_16860 PF01544 CorA-like Mg2+ transporter protein LA341_16875 PF00226 DnaJ domain LA341_16875 PF01556 DnaJ C terminal domain LA341_16875 PF00684 DnaJ central domain LA341_16885 PF05068 Mannitol repressor LA341_16890 PF08125 Mannitol dehydrogenase C-terminal domain LA341_16890 PF01232 Mannitol dehydrogenase Rossmann domain LA341_16895 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA341_16895 PF02378 Phosphotransferase system, EIIC LA341_16895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA341_16900 PF03279 Bacterial lipid A biosynthesis acyltransferase LA341_16905 PF00294 pfkB family carbohydrate kinase LA341_16905 PF01467 Cytidylyltransferase-like LA341_16910 PF02321 Outer membrane efflux protein LA341_16915 PF00293 NUDIX domain LA341_16920 PF06853 Protein of unknown function (DUF1249) LA341_16925 PF00149 Calcineurin-like phosphoesterase LA341_16930 PF05728 Uncharacterised protein family (UPF0227) LA341_16935 PF00293 NUDIX domain LA341_16945 PF00204 DNA gyrase B LA341_16945 PF00986 DNA gyrase B subunit, carboxyl terminus LA341_16945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_16945 PF01751 Toprim domain LA341_16950 PF03992 Antibiotic biosynthesis monooxygenase LA341_16955 PF03989 DNA gyrase C-terminal domain, beta-propeller LA341_16955 PF00521 DNA gyrase/topoisomerase IV, subunit A LA341_16980 PF01212 Beta-eliminating lyase LA341_16985 PF03222 Tryptophan/tyrosine permease family LA341_17010 PF00684 DnaJ central domain LA341_17010 PF00226 DnaJ domain LA341_17010 PF01556 DnaJ C terminal domain LA341_17015 PF00578 AhpC/TSA family LA341_17035 PF01553 Acyltransferase LA341_17040 PF04012 PspA/IM30 family LA341_17055 PF01541 GIY-YIG catalytic domain LA341_17065 PF00892 EamA-like transporter family LA341_17070 PF03167 Uracil DNA glycosylase superfamily LA341_17075 PF00892 EamA-like transporter family LA341_17080 PF03466 LysR substrate binding domain LA341_17080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_17085 PF00950 ABC 3 transport family LA341_17090 PF00005 ABC transporter LA341_17095 PF01297 Zinc-uptake complex component A periplasmic LA341_17115 PF01551 Peptidase family M23 LA341_17115 PF01476 LysM domain LA341_17115 PF08525 Opacity-associated protein A N-terminal motif LA341_17120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA341_17125 PF04222 Protein of unknown function (DUF416) LA341_17130 PF06965 Na+/H+ antiporter 1 LA341_17140 PF03466 LysR substrate binding domain LA341_17140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_17145 PF01022 Bacterial regulatory protein, arsR family LA341_17150 PF01649 Ribosomal protein S20 LA341_17155 PF03023 Lipid II flippase MurJ LA341_17160 PF06574 FAD synthetase LA341_17160 PF01687 Riboflavin kinase LA341_17165 PF08264 Anticodon-binding domain of tRNA LA341_17165 PF00133 tRNA synthetases class I (I, L, M and V) LA341_17165 PF06827 Zinc finger found in FPG and IleRS LA341_17170 PF01252 Signal peptidase (SPase) II LA341_17175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA341_17180 PF02401 LytB protein LA341_17205 PF05567 Neisseria PilC beta-propeller domain LA341_17215 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LA341_17215 PF07963 Prokaryotic N-terminal methylation motif LA341_17240 PF00795 Carbon-nitrogen hydrolase LA341_17240 PF02540 NAD synthase LA341_17245 PF00543 Nitrogen regulatory protein P-II LA341_17255 PF02664 S-Ribosylhomocysteinase (LuxS) LA341_17260 PF07963 Prokaryotic N-terminal methylation motif LA341_17265 PF01026 TatD related DNase LA341_17270 PF01773 Na+ dependent nucleoside transporter N-terminus LA341_17270 PF07670 Nucleoside recognition LA341_17270 PF07662 Na+ dependent nucleoside transporter C-terminus LA341_17280 PF01791 DeoC/LacD family aldolase LA341_17285 PF00591 Glycosyl transferase family, a/b domain LA341_17285 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LA341_17285 PF02885 Glycosyl transferase family, helical bundle domain LA341_17290 PF01676 Metalloenzyme superfamily LA341_17295 PF01048 Phosphorylase superfamily LA341_17300 PF05231 MASE1 LA341_17300 PF08447 PAS fold LA341_17300 PF08448 PAS fold LA341_17300 PF13426 PAS domain LA341_17300 PF00563 EAL domain LA341_17300 PF00990 Diguanylate cyclase, GGDEF domain LA341_17310 PF18429 Domain of unknown function (DUF5609) LA341_17325 PF18073 Rubredoxin metal binding domain LA341_17330 PF07238 PilZ domain LA341_17335 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LA341_17340 PF00216 Bacterial DNA-binding protein LA341_17345 PF02272 DHHA1 domain LA341_17345 PF01411 tRNA synthetases class II (A) LA341_17345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LA341_17350 PF01566 Natural resistance-associated macrophage protein LA341_17355 PF01250 Ribosomal protein S6 LA341_17360 PF01084 Ribosomal protein S18 LA341_17365 PF03948 Ribosomal protein L9, C-terminal domain LA341_17365 PF01281 Ribosomal protein L9, N-terminal domain LA341_17370 PF00970 Oxidoreductase FAD-binding domain LA341_17370 PF00175 Oxidoreductase NAD-binding domain LA341_17390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA341_17400 PF08240 Alcohol dehydrogenase GroES-like domain LA341_17400 PF00107 Zinc-binding dehydrogenase LA341_17405 PF09335 SNARE associated Golgi protein LA341_17410 PF00675 Insulinase (Peptidase family M16) LA341_17410 PF05193 Peptidase M16 inactive domain LA341_17415 PF04262 Glutamate-cysteine ligase LA341_17425 PF00501 AMP-binding enzyme LA341_17435 PF00583 Acetyltransferase (GNAT) family LA341_17450 PF12592 Protein of unknown function (DUF3763) LA341_17450 PF07728 AAA domain (dynein-related subfamily) LA341_17450 PF17868 AAA lid domain LA341_17455 PF05762 VWA domain containing CoxE-like protein LA341_17460 PF03707 Bacterial signalling protein N terminal repeat LA341_17460 PF00990 Diguanylate cyclase, GGDEF domain LA341_17460 PF00563 EAL domain LA341_17460 PF13188 PAS domain LA341_17465 PF00072 Response regulator receiver domain LA341_17465 PF00990 Diguanylate cyclase, GGDEF domain LA341_17470 PF00009 Elongation factor Tu GTP binding domain LA341_17470 PF03144 Elongation factor Tu domain 2 LA341_17470 PF16658 Class II release factor RF3, C-terminal domain LA341_17480 PF00583 Acetyltransferase (GNAT) family LA341_17485 PF00583 Acetyltransferase (GNAT) family LA341_17490 PF07690 Major Facilitator Superfamily LA341_17495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_17495 PF03466 LysR substrate binding domain LA341_17500 PF13302 Acetyltransferase (GNAT) domain LA341_17505 PF13302 Acetyltransferase (GNAT) domain LA341_17515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LA341_17515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LA341_17520 PF07690 Major Facilitator Superfamily LA341_17525 PF01725 Ham1 family LA341_17530 PF06969 HemN C-terminal domain LA341_17530 PF04055 Radical SAM superfamily LA341_17535 PF03889 Alternative ribosome-rescue factor A LA341_17545 PF13411 MerR HTH family regulatory protein LA341_17550 PF02142 MGS-like domain LA341_17550 PF01808 AICARFT/IMPCHase bienzyme LA341_17555 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LA341_17555 PF02843 Phosphoribosylglycinamide synthetase, C domain LA341_17555 PF02844 Phosphoribosylglycinamide synthetase, N domain LA341_17565 PF00293 NUDIX domain LA341_17575 PF01641 SelR domain LA341_17580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA341_17580 PF00128 Alpha amylase, catalytic domain LA341_17585 PF00128 Alpha amylase, catalytic domain LA341_17585 PF02806 Alpha amylase, C-terminal all-beta domain LA341_17585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA341_17590 PF02446 4-alpha-glucanotransferase LA341_17595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LA341_17595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LA341_17600 PF01263 Aldose 1-epimerase LA341_17605 PF02445 Quinolinate synthetase A protein LA341_17610 PF01957 NfeD-like C-terminal, partner-binding LA341_17615 PF01145 SPFH domain / Band 7 family LA341_17615 PF16200 C-terminal region of band_7 LA341_17620 PF10414 Sirohaem synthase dimerisation region LA341_17620 PF14824 Sirohaem biosynthesis protein central LA341_17620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA341_17625 PF01507 Phosphoadenosine phosphosulfate reductase family LA341_17630 PF00009 Elongation factor Tu GTP binding domain LA341_17635 PF02080 TrkA-C domain LA341_17635 PF03600 Citrate transporter LA341_17650 PF12729 Four helix bundle sensory module for signal transduction LA341_17650 PF00672 HAMP domain LA341_17650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_17670 PF00005 ABC transporter LA341_17685 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LA341_17700 PF00719 Inorganic pyrophosphatase LA341_17705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA341_17710 PF00912 Transglycosylase LA341_17710 PF14814 Bifunctional transglycosylase second domain LA341_17710 PF00905 Penicillin binding protein transpeptidase domain LA341_17715 PF00270 DEAD/DEAH box helicase LA341_17715 PF04408 Helicase associated domain (HA2) LA341_17715 PF00271 Helicase conserved C-terminal domain LA341_17715 PF08482 ATP-dependent helicase C-terminal LA341_17720 PF02834 LigT like Phosphoesterase LA341_17725 PF03749 Sugar fermentation stimulation protein RE domain LA341_17725 PF17746 SfsA N-terminal OB domain LA341_17730 PF01258 Prokaryotic dksA/traR C4-type zinc finger LA341_17735 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA341_17740 PF01743 Poly A polymerase head domain LA341_17740 PF12626 Polymerase A arginine-rich C-terminus LA341_17740 PF12627 Probable RNA and SrmB- binding site of polymerase A LA341_17745 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LA341_17750 PF02548 Ketopantoate hydroxymethyltransferase LA341_17755 PF02569 Pantoate-beta-alanine ligase LA341_17770 PF01061 ABC-2 type transporter LA341_17775 PF00005 ABC transporter LA341_17780 PF00156 Phosphoribosyl transferase domain LA341_17785 PF00440 Bacterial regulatory proteins, tetR family LA341_17790 PF02441 Flavoprotein LA341_17795 PF01225 Mur ligase family, catalytic domain LA341_17795 PF02875 Mur ligase family, glutamate ligase domain LA341_17795 PF08245 Mur ligase middle domain LA341_17800 PF01569 PAP2 superfamily LA341_17805 PF16363 GDP-mannose 4,6 dehydratase LA341_17810 PF00970 Oxidoreductase FAD-binding domain LA341_17810 PF00111 2Fe-2S iron-sulfur cluster binding domain LA341_17810 PF00175 Oxidoreductase NAD-binding domain LA341_17815 PF03063 Prismane/CO dehydrogenase family LA341_17820 PF00210 Ferritin-like domain LA341_17825 PF01510 N-acetylmuramoyl-L-alanine amidase LA341_17830 PF07308 Protein of unknown function (DUF1456) LA341_17835 PF00672 HAMP domain LA341_17835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_17835 PF00512 His Kinase A (phospho-acceptor) domain LA341_17835 PF01627 Hpt domain LA341_17835 PF00072 Response regulator receiver domain LA341_17835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LA341_17840 PF01938 TRAM domain LA341_17840 PF05958 tRNA (Uracil-5-)-methyltransferase LA341_17845 PF13291 ACT domain LA341_17845 PF04607 Region found in RelA / SpoT proteins LA341_17845 PF02824 TGS domain LA341_17850 PF03819 MazG nucleotide pyrophosphohydrolase domain LA341_17855 PF06418 CTP synthase N-terminus LA341_17855 PF00117 Glutamine amidotransferase class-I LA341_17860 PF00113 Enolase, C-terminal TIM barrel domain LA341_17860 PF03952 Enolase, N-terminal domain LA341_17865 PF00672 HAMP domain LA341_17865 PF17200 Single Cache domain 2 LA341_17865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_17920 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LA341_17930 PF00005 ABC transporter LA341_17930 PF12848 ABC transporter LA341_17935 PF00571 CBS domain LA341_17935 PF01380 SIS domain LA341_17945 PF00155 Aminotransferase class I and II LA341_17945 PF00392 Bacterial regulatory proteins, gntR family LA341_17955 PF01810 LysE type translocator LA341_17960 PF01177 Asp/Glu/Hydantoin racemase LA341_17965 PF10518 TAT (twin-arginine translocation) pathway signal sequence LA341_17965 PF00394 Multicopper oxidase LA341_17965 PF07732 Multicopper oxidase LA341_17965 PF07731 Multicopper oxidase LA341_17975 PF04074 YhcH/YjgK/YiaL LA341_17980 PF00871 Acetokinase family LA341_17985 PF00924 Mechanosensitive ion channel LA341_17990 PF17969 L,D-transpeptidase C-terminal domain LA341_17990 PF03734 L,D-transpeptidase catalytic domain LA341_17995 PF00474 Sodium:solute symporter family LA341_18000 PF04977 Septum formation initiator LA341_18005 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LA341_18010 PF02542 YgbB family LA341_18015 PF01142 tRNA pseudouridine synthase D (TruD) LA341_18020 PF01975 Survival protein SurE LA341_18030 PF09335 SNARE associated Golgi protein LA341_18035 PF01476 LysM domain LA341_18035 PF01551 Peptidase family M23 LA341_18040 PF00140 Sigma-70 factor, region 1.2 LA341_18040 PF04542 Sigma-70 region 2 LA341_18040 PF04539 Sigma-70 region 3 LA341_18040 PF04545 Sigma-70, region 4 LA341_18045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA341_18055 PF03466 LysR substrate binding domain LA341_18055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_18060 PF04371 Porphyromonas-type peptidyl-arginine deiminase LA341_18065 PF01425 Amidase LA341_18085 PF00271 Helicase conserved C-terminal domain LA341_18085 PF00270 DEAD/DEAH box helicase LA341_18090 PF00990 Diguanylate cyclase, GGDEF domain LA341_18100 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase LA341_18110 PF00445 Ribonuclease T2 family LA341_18120 PF03060 Nitronate monooxygenase LA341_18145 PF00293 NUDIX domain LA341_18145 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LA341_18145 PF09297 NADH pyrophosphatase zinc ribbon domain LA341_18150 PF05170 AsmA family LA341_18155 PF03710 Glutamate-ammonia ligase adenylyltransferase LA341_18155 PF08335 GlnD PII-uridylyltransferase LA341_18165 PF00860 Permease family LA341_18175 PF00005 ABC transporter LA341_18175 PF12848 ABC transporter LA341_18180 PF01464 Transglycosylase SLT domain LA341_18185 PF00535 Glycosyl transferase family 2 LA341_18195 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LA341_18200 PF01370 NAD dependent epimerase/dehydratase family LA341_18205 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LA341_18205 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LA341_18205 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LA341_18215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA341_18215 PF00005 ABC transporter LA341_18220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA341_18220 PF00005 ABC transporter LA341_18225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_18230 PF00528 Binding-protein-dependent transport system inner membrane component LA341_18230 PF12911 N-terminal TM domain of oligopeptide transport permease C LA341_18235 PF00528 Binding-protein-dependent transport system inner membrane component LA341_18240 PF17969 L,D-transpeptidase C-terminal domain LA341_18240 PF03734 L,D-transpeptidase catalytic domain LA341_18245 PF01343 Peptidase family S49 LA341_18250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA341_18250 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA341_18255 PF00881 Nitroreductase family LA341_18265 PF08240 Alcohol dehydrogenase GroES-like domain LA341_18265 PF00107 Zinc-binding dehydrogenase LA341_18270 PF03466 LysR substrate binding domain LA341_18270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_18275 PF00367 phosphotransferase system, EIIB LA341_18275 PF02378 Phosphotransferase system, EIIC LA341_18275 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LA341_18280 PF00474 Sodium:solute symporter family LA341_18290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA341_18290 PF02785 Biotin carboxylase C-terminal domain LA341_18290 PF00289 Biotin carboxylase, N-terminal domain LA341_18295 PF00364 Biotin-requiring enzyme LA341_18300 PF01220 Dehydroquinase class II LA341_18305 PF16177 Acetyl-coenzyme A synthetase N-terminus LA341_18305 PF13193 AMP-binding enzyme C-terminal domain LA341_18305 PF00501 AMP-binding enzyme LA341_18310 PF00990 Diguanylate cyclase, GGDEF domain LA341_18310 PF13188 PAS domain LA341_18310 PF00563 EAL domain LA341_18310 PF03707 Bacterial signalling protein N terminal repeat LA341_18325 PF02613 Nitrate reductase delta subunit LA341_18330 PF00384 Molybdopterin oxidoreductase LA341_18330 PF18364 Molybdopterin oxidoreductase N-terminal domain LA341_18330 PF01568 Molydopterin dinucleotide binding domain LA341_18335 PF03264 NapC/NirT cytochrome c family, N-terminal region LA341_18340 PF00072 Response regulator receiver domain LA341_18340 PF00486 Transcriptional regulatory protein, C terminal LA341_18350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LA341_18355 PF00672 HAMP domain LA341_18355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_18355 PF00512 His Kinase A (phospho-acceptor) domain LA341_18355 PF00072 Response regulator receiver domain LA341_18355 PF01627 Hpt domain LA341_18360 PF00464 Serine hydroxymethyltransferase LA341_18365 PF03477 ATP cone domain LA341_18370 PF01872 RibD C-terminal domain LA341_18370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LA341_18375 PF00677 Lumazine binding domain LA341_18380 PF00925 GTP cyclohydrolase II LA341_18380 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LA341_18385 PF00885 6,7-dimethyl-8-ribityllumazine synthase LA341_18390 PF01029 NusB family LA341_18395 PF00586 AIR synthase related protein, N-terminal domain LA341_18395 PF02769 AIR synthase related protein, C-terminal domain LA341_18400 PF04608 Phosphatidylglycerophosphatase A LA341_18405 PF00005 ABC transporter LA341_18405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA341_18410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA341_18415 PF00528 Binding-protein-dependent transport system inner membrane component LA341_18420 PF12911 N-terminal TM domain of oligopeptide transport permease C LA341_18420 PF00528 Binding-protein-dependent transport system inner membrane component LA341_18425 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LA341_18425 PF02780 Transketolase, C-terminal domain LA341_18425 PF02779 Transketolase, pyrimidine binding domain LA341_18430 PF00348 Polyprenyl synthetase LA341_18435 PF02609 Exonuclease VII small subunit LA341_18440 PF01618 MotA/TolQ/ExbB proton channel family LA341_18445 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA341_18445 PF00691 OmpA family LA341_18445 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA341_18445 PF00691 OmpA family LA341_18450 PF03449 Transcription elongation factor, N-terminal LA341_18450 PF01272 Transcription elongation factor, GreA/GreB, C-term LA341_18460 PF01985 CRS1 / YhbY (CRM) domain LA341_18465 PF01728 FtsJ-like methyltransferase LA341_18470 PF00004 ATPase family associated with various cellular activities (AAA) LA341_18470 PF17862 AAA+ lid domain LA341_18470 PF06480 FtsH Extracellular LA341_18470 PF01434 Peptidase family M41 LA341_18475 PF00809 Pterin binding enzyme LA341_18480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LA341_18480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LA341_18480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LA341_18480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LA341_18485 PF00121 Triosephosphate isomerase LA341_18490 PF03840 Preprotein translocase SecG subunit LA341_18505 PF17384 RimP C-terminal SH3 domain LA341_18505 PF02576 RimP N-terminal domain LA341_18510 PF13184 NusA-like KH domain LA341_18510 PF00575 S1 RNA binding domain LA341_18510 PF08529 NusA N-terminal domain LA341_18515 PF11987 Translation-initiation factor 2 LA341_18515 PF08364 Bacterial translation initiation factor IF-2 associated region LA341_18515 PF04760 Translation initiation factor IF-2, N-terminal region LA341_18515 PF00009 Elongation factor Tu GTP binding domain LA341_18520 PF02033 Ribosome-binding factor A LA341_18525 PF16198 tRNA pseudouridylate synthase B C-terminal domain LA341_18525 PF01509 TruB family pseudouridylate synthase (N terminal domain) LA341_18525 PF09157 Pseudouridine synthase II TruB, C-terminal LA341_18530 PF00312 Ribosomal protein S15 LA341_18535 PF00013 KH domain LA341_18535 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LA341_18535 PF03725 3' exoribonuclease family, domain 2 LA341_18535 PF00575 S1 RNA binding domain LA341_18535 PF01138 3' exoribonuclease family, domain 1 LA341_18540 PF01339 CheB methylesterase LA341_18540 PF00072 Response regulator receiver domain LA341_18545 PF03975 CheD chemotactic sensory transduction LA341_18550 PF01739 CheR methyltransferase, SAM binding domain LA341_18550 PF03705 CheR methyltransferase, all-alpha domain LA341_18555 PF00672 HAMP domain LA341_18555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_18560 PF01584 CheW-like domain LA341_18565 PF07194 P2 response regulator binding domain LA341_18565 PF01627 Hpt domain LA341_18565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_18565 PF01584 CheW-like domain LA341_18565 PF02895 Signal transducing histidine kinase, homodimeric domain LA341_18575 PF00072 Response regulator receiver domain LA341_18580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_18580 PF02743 Cache domain LA341_18580 PF00672 HAMP domain LA341_18585 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA341_18585 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA341_18590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_18590 PF03466 LysR substrate binding domain LA341_18595 PF01810 LysE type translocator LA341_18600 PF12392 Collagenase LA341_18600 PF01136 Peptidase family U32 LA341_18610 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LA341_18610 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LA341_18615 PF02805 Metal binding domain of Ada LA341_18615 PF06029 AlkA N-terminal domain LA341_18615 PF12833 Helix-turn-helix domain LA341_18615 PF00730 HhH-GPD superfamily base excision DNA repair protein LA341_18650 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LA341_18675 PF00106 short chain dehydrogenase LA341_18680 PF03573 outer membrane porin, OprD family LA341_18685 PF16591 Helical bimodular sensor domain LA341_18685 PF00672 HAMP domain LA341_18685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_18695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_18695 PF03466 LysR substrate binding domain LA341_18710 PF00696 Amino acid kinase family LA341_18715 PF06545 Protein of unknown function (DUF1116) LA341_18720 PF02629 CoA binding domain LA341_18720 PF00549 CoA-ligase LA341_18725 PF00857 Isochorismatase family LA341_18755 PF01817 Chorismate mutase type II LA341_18755 PF00800 Prephenate dehydratase LA341_18785 PF08349 Protein of unknown function (DUF1722) LA341_18790 PF13411 MerR HTH family regulatory protein LA341_18795 PF00875 DNA photolyase LA341_18795 PF03441 FAD binding domain of DNA photolyase LA341_18805 PF00106 short chain dehydrogenase LA341_18850 PF02424 ApbE family LA341_18855 PF00970 Oxidoreductase FAD-binding domain LA341_18855 PF00175 Oxidoreductase NAD-binding domain LA341_18855 PF00111 2Fe-2S iron-sulfur cluster binding domain LA341_18860 PF02508 Rnf-Nqr subunit, membrane protein LA341_18865 PF02508 Rnf-Nqr subunit, membrane protein LA341_18870 PF04205 FMN-binding domain LA341_18875 PF03116 NQR2, RnfD, RnfE family LA341_18880 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LA341_18880 PF11973 NQRA C-terminal domain LA341_18885 PF01722 BolA-like protein LA341_18890 PF05175 Methyltransferase small domain LA341_18900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LA341_18905 PF07690 Major Facilitator Superfamily LA341_18910 PF03502 Nucleoside-specific channel-forming protein, Tsx LA341_18915 PF04461 Protein of unknown function (DUF520) LA341_18920 PF02558 Ketopantoate reductase PanE/ApbA LA341_18920 PF08546 Ketopantoate reductase PanE/ApbA C terminal LA341_18925 PF01965 DJ-1/PfpI family LA341_18935 PF00817 impB/mucB/samB family LA341_18935 PF11799 impB/mucB/samB family C-terminal domain LA341_18935 PF11798 IMS family HHH motif LA341_18940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_18940 PF00672 HAMP domain LA341_18945 PF03466 LysR substrate binding domain LA341_18945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_18955 PF04241 Protein of unknown function (DUF423) LA341_18960 PF18125 RlmM ferredoxin-like domain LA341_18960 PF01728 FtsJ-like methyltransferase LA341_18970 PF00180 Isocitrate/isopropylmalate dehydrogenase LA341_18970 PF18324 Hypothetical protein TT1725 LA341_18975 PF01367 5'-3' exonuclease, C-terminal SAM fold LA341_18975 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LA341_18980 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LA341_18980 PF11892 Domain of unknown function (DUF3412) LA341_18980 PF03641 Possible lysine decarboxylase LA341_18985 PF00990 Diguanylate cyclase, GGDEF domain LA341_18995 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LA341_18995 PF14489 QueF-like protein LA341_19000 PF07348 Syd protein (SUKH-2) LA341_19005 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LA341_19030 PF04287 tRNA pseudouridine synthase C LA341_19035 PF00849 RNA pseudouridylate synthase LA341_19040 PF00258 Flavodoxin LA341_19045 PF02264 LamB porin LA341_19050 PF07148 Maltose operon periplasmic protein precursor (MalM) LA341_19055 PF00367 phosphotransferase system, EIIB LA341_19055 PF02378 Phosphotransferase system, EIIC LA341_19060 PF11944 Protein of unknown function (DUF3461) LA341_19065 PF00132 Bacterial transferase hexapeptide (six repeats) LA341_19065 PF14602 Hexapeptide repeat of succinyl-transferase LA341_19065 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LA341_19070 PF01909 Nucleotidyltransferase domain LA341_19070 PF01842 ACT domain LA341_19070 PF08335 GlnD PII-uridylyltransferase LA341_19070 PF01966 HD domain LA341_19075 PF00557 Metallopeptidase family M24 LA341_19080 PF00318 Ribosomal protein S2 LA341_19085 PF00889 Elongation factor TS LA341_19090 PF00696 Amino acid kinase family LA341_19095 PF01765 Ribosome recycling factor LA341_19100 PF01255 Putative undecaprenyl diphosphate synthase LA341_19110 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LA341_19110 PF13288 DXP reductoisomerase C-terminal domain LA341_19110 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LA341_19115 PF02163 Peptidase family M50 LA341_19115 PF17820 PDZ domain LA341_19120 PF01103 Surface antigen LA341_19120 PF07244 Surface antigen variable number repeat LA341_19125 PF03938 Outer membrane protein (OmpH-like) LA341_19130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LA341_19130 PF00132 Bacterial transferase hexapeptide (six repeats) LA341_19135 PF07977 FabA-like domain LA341_19140 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LA341_19140 PF00132 Bacterial transferase hexapeptide (six repeats) LA341_19145 PF02684 Lipid-A-disaccharide synthetase LA341_19150 PF01351 Ribonuclease HII LA341_19155 PF07733 Bacterial DNA polymerase III alpha NTPase domain LA341_19155 PF14579 Helix-hairpin-helix motif LA341_19155 PF01336 OB-fold nucleic acid binding domain LA341_19155 PF02811 PHP domain LA341_19155 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LA341_19160 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LA341_19170 PF00923 Transaldolase/Fructose-6-phosphate aldolase LA341_19175 PF01235 Sodium:alanine symporter family LA341_19180 PF11992 Domain of unknown function (DUF3488) LA341_19180 PF01841 Transglutaminase-like superfamily LA341_19180 PF13559 Domain of unknown function (DUF4129) LA341_19190 PF17863 AAA lid domain LA341_19190 PF07726 ATPase family associated with various cellular activities (AAA) LA341_19195 PF00144 Beta-lactamase LA341_19200 PF03652 Holliday junction resolvase LA341_19205 PF02622 Uncharacterized ACR, COG1678 LA341_19210 PF00672 HAMP domain LA341_19210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_19210 PF12729 Four helix bundle sensory module for signal transduction LA341_19215 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LA341_19215 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LA341_19220 PF04452 RNA methyltransferase LA341_19225 PF04231 Endonuclease I LA341_19230 PF10263 SprT-like family LA341_19235 PF00438 S-adenosylmethionine synthetase, N-terminal domain LA341_19235 PF02772 S-adenosylmethionine synthetase, central domain LA341_19235 PF02773 S-adenosylmethionine synthetase, C-terminal domain LA341_19240 PF00456 Transketolase, thiamine diphosphate binding domain LA341_19240 PF02779 Transketolase, pyrimidine binding domain LA341_19240 PF02780 Transketolase, C-terminal domain LA341_19250 PF01042 Endoribonuclease L-PSP LA341_19260 PF03702 Anhydro-N-acetylmuramic acid kinase LA341_19265 PF01551 Peptidase family M23 LA341_19265 PF08525 Opacity-associated protein A N-terminal motif LA341_19265 PF01476 LysM domain LA341_19270 PF00579 tRNA synthetases class I (W and Y) LA341_19280 PF03466 LysR substrate binding domain LA341_19280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_19290 PF13520 Amino acid permease LA341_19295 PF18500 CadC C-terminal domain 1 LA341_19295 PF00486 Transcriptional regulatory protein, C terminal LA341_19300 PF13520 Amino acid permease LA341_19305 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LA341_19305 PF01276 Orn/Lys/Arg decarboxylase, major domain LA341_19305 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LA341_19310 PF08543 Phosphomethylpyrimidine kinase LA341_19320 PF01431 Peptidase family M13 LA341_19320 PF05649 Peptidase family M13 LA341_19325 PF01171 PP-loop family LA341_19325 PF11734 TilS substrate C-terminal domain LA341_19325 PF09179 TilS substrate binding domain LA341_19330 PF00990 Diguanylate cyclase, GGDEF domain LA341_19335 PF02254 TrkA-N domain LA341_19335 PF00999 Sodium/hydrogen exchanger family LA341_19335 PF02080 TrkA-C domain LA341_19355 PF00196 Bacterial regulatory proteins, luxR family LA341_19355 PF00072 Response regulator receiver domain LA341_19365 PF00128 Alpha amylase, catalytic domain LA341_19380 PF00535 Glycosyl transferase family 2 LA341_19395 PF01471 Putative peptidoglycan binding domain LA341_19395 PF03734 L,D-transpeptidase catalytic domain LA341_19400 PF05951 Bacterial protein of unknown function (DUF882) LA341_19410 PF03458 UPF0126 domain LA341_19420 PF06470 SMC proteins Flexible Hinge Domain LA341_19420 PF02463 RecF/RecN/SMC N terminal domain LA341_19425 PF04354 ZipA, C-terminal FtsZ-binding domain LA341_19430 PF00533 BRCA1 C Terminus (BRCT) domain LA341_19430 PF01653 NAD-dependent DNA ligase adenylation domain LA341_19430 PF03120 NAD-dependent DNA ligase OB-fold domain LA341_19430 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LA341_19430 PF12826 Helix-hairpin-helix motif LA341_19440 PF03477 ATP cone domain LA341_19440 PF13597 Anaerobic ribonucleoside-triphosphate reductase LA341_19450 PF01679 Proteolipid membrane potential modulator LA341_19470 PF00529 HlyD membrane-fusion protein of T1SS LA341_19470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_19475 PF01047 MarR family LA341_19485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_19485 PF00989 PAS fold LA341_19485 PF17203 Single cache domain 3 LA341_19485 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LA341_19490 PF12431 Transcriptional regulator LA341_19490 PF00072 Response regulator receiver domain LA341_19495 PF00892 EamA-like transporter family LA341_19505 PF00171 Aldehyde dehydrogenase family LA341_19510 PF01590 GAF domain LA341_19510 PF00158 Sigma-54 interaction domain LA341_19510 PF02954 Bacterial regulatory protein, Fis family LA341_19515 PF00990 Diguanylate cyclase, GGDEF domain LA341_19520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA341_19525 PF00486 Transcriptional regulatory protein, C terminal LA341_19525 PF00072 Response regulator receiver domain LA341_19530 PF00989 PAS fold LA341_19530 PF11808 Phosphate regulon sensor protein PhoR LA341_19530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_19530 PF00512 His Kinase A (phospho-acceptor) domain LA341_19535 PF12849 PBP superfamily domain LA341_19540 PF01435 Peptidase family M48 LA341_19550 PF00480 ROK family LA341_19555 PF03932 CutC family LA341_19560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA341_19560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LA341_19575 PF00293 NUDIX domain LA341_19585 PF08534 Redoxin LA341_19590 PF01699 Sodium/calcium exchanger protein LA341_19595 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LA341_19595 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LA341_19600 PF01235 Sodium:alanine symporter family LA341_19610 PF00860 Permease family LA341_19615 PF00990 Diguanylate cyclase, GGDEF domain LA341_19615 PF08448 PAS fold LA341_19620 PF10692 Protein of unknown function (DUF2498) LA341_19625 PF01554 MatE LA341_19630 PF12833 Helix-turn-helix domain LA341_19635 PF03949 Malic enzyme, NAD binding domain LA341_19635 PF00390 Malic enzyme, N-terminal domain LA341_19640 PF00691 OmpA family LA341_19640 PF01389 OmpA-like transmembrane domain LA341_19645 PF00691 OmpA family LA341_19645 PF01389 OmpA-like transmembrane domain LA341_19650 PF00691 OmpA family LA341_19650 PF01389 OmpA-like transmembrane domain LA341_19665 PF00209 Sodium:neurotransmitter symporter family LA341_19670 PF01734 Patatin-like phospholipase LA341_19675 PF00990 Diguanylate cyclase, GGDEF domain LA341_19675 PF00072 Response regulator receiver domain LA341_19680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA341_19680 PF00529 HlyD membrane-fusion protein of T1SS LA341_19685 PF00873 AcrB/AcrD/AcrF family LA341_19690 PF08497 Radical SAM N-terminal LA341_19690 PF04055 Radical SAM superfamily LA341_19690 PF11842 Domain of unknown function (DUF3362) LA341_19725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LA341_19735 PF04358 DsrC like protein LA341_19740 PF12805 FUSC-like inner membrane protein yccS LA341_19745 PF01027 Inhibitor of apoptosis-promoting Bax1 LA341_19755 PF07969 Amidohydrolase family LA341_19760 PF04794 YdjC-like protein LA341_19765 PF11975 Family 4 glycosyl hydrolase C-terminal domain LA341_19765 PF02056 Family 4 glycosyl hydrolase LA341_19770 PF07883 Cupin domain LA341_19770 PF12833 Helix-turn-helix domain LA341_19775 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LA341_19780 PF00232 Glycosyl hydrolase family 1 LA341_19785 PF02378 Phosphotransferase system, EIIC LA341_19790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA341_19795 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LA341_19805 PF03480 Bacterial extracellular solute-binding protein, family 7 LA341_19810 PF04074 YhcH/YjgK/YiaL LA341_19815 PF01081 KDPG and KHG aldolase LA341_19820 PF00294 pfkB family carbohydrate kinase LA341_19825 PF09339 IclR helix-turn-helix domain LA341_19825 PF01614 Bacterial transcriptional regulator LA341_19830 PF10688 Bacterial inner membrane protein LA341_19840 PF04962 KduI/IolB family LA341_19845 PF01203 Type II secretion system (T2SS), protein N LA341_19850 PF04612 Type II secretion system (T2SS), protein M LA341_19855 PF12693 GspL periplasmic domain LA341_19855 PF05134 Type II secretion system (T2SS), protein L LA341_19860 PF03934 Type II secretion system (T2SS), protein K LA341_19865 PF07963 Prokaryotic N-terminal methylation motif LA341_19865 PF11612 Type II secretion system (T2SS), protein J LA341_19870 PF07963 Prokaryotic N-terminal methylation motif LA341_19870 PF02501 Type II secretion system (T2SS), protein I LA341_19875 PF12019 Type II transport protein GspH LA341_19875 PF07963 Prokaryotic N-terminal methylation motif LA341_19880 PF07963 Prokaryotic N-terminal methylation motif LA341_19880 PF08334 Type II secretion system (T2SS), protein G LA341_19885 PF00482 Type II secretion system (T2SS), protein F LA341_19890 PF00437 Type II/IV secretion system protein LA341_19895 PF00263 Bacterial type II and III secretion system protein LA341_19895 PF03958 Bacterial type II/III secretion system short domain LA341_19900 PF11356 Type II secretion system protein C LA341_19905 PF16537 Type II secretion system protein B LA341_19910 PF01471 Putative peptidoglycan binding domain LA341_19910 PF13401 AAA domain LA341_19915 PF01966 HD domain LA341_19915 PF00672 HAMP domain LA341_19920 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA341_19920 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA341_19930 PF00004 ATPase family associated with various cellular activities (AAA) LA341_19930 PF17862 AAA+ lid domain LA341_19930 PF01434 Peptidase family M41 LA341_19935 PF00291 Pyridoxal-phosphate dependent enzyme LA341_19940 PF00381 PTS HPr component phosphorylation site LA341_19945 PF05524 PEP-utilising enzyme, N-terminal LA341_19945 PF02896 PEP-utilising enzyme, TIM barrel domain LA341_19945 PF00391 PEP-utilising enzyme, mobile domain LA341_19950 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LA341_19955 PF00924 Mechanosensitive ion channel LA341_19955 PF12794 Mechanosensitive ion channel inner membrane domain 1 LA341_19955 PF12795 Mechanosensitive ion channel porin domain LA341_19960 PF02887 Pyruvate kinase, alpha/beta domain LA341_19960 PF00224 Pyruvate kinase, barrel domain LA341_19970 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LA341_19975 PF13476 AAA domain LA341_19980 PF12320 Type 5 capsule protein repressor C-terminal domain LA341_19980 PF00149 Calcineurin-like phosphoesterase LA341_19990 PF04381 Putative exonuclease, RdgC LA341_20000 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LA341_20000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA341_20005 PF02690 Na+/Pi-cotransporter LA341_20020 PF13520 Amino acid permease LA341_20030 PF00324 Amino acid permease LA341_20035 PF00202 Aminotransferase class-III LA341_20040 PF00171 Aldehyde dehydrogenase family LA341_20045 PF07883 Cupin domain LA341_20045 PF01381 Helix-turn-helix LA341_20050 PF01266 FAD dependent oxidoreductase LA341_20080 PF02954 Bacterial regulatory protein, Fis family LA341_20080 PF00072 Response regulator receiver domain LA341_20080 PF00158 Sigma-54 interaction domain LA341_20095 PF03350 Uncharacterized protein family, UPF0114 LA341_20100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_20105 PF00072 Response regulator receiver domain LA341_20105 PF00486 Transcriptional regulatory protein, C terminal LA341_20115 PF01292 Prokaryotic cytochrome b561 LA341_20120 PF01980 tRNA-methyltransferase O LA341_20120 PF18389 TrmO C-terminal domain LA341_20140 PF00664 ABC transporter transmembrane region LA341_20140 PF00005 ABC transporter LA341_20145 PF00664 ABC transporter transmembrane region LA341_20145 PF00005 ABC transporter LA341_20160 PF00072 Response regulator receiver domain LA341_20160 PF00486 Transcriptional regulatory protein, C terminal LA341_20170 PF03737 Aldolase/RraA LA341_20185 PF01022 Bacterial regulatory protein, arsR family LA341_20190 PF06953 Arsenical resistance operon trans-acting repressor ArsD LA341_20195 PF02374 Anion-transporting ATPase LA341_20200 PF01758 Sodium Bile acid symporter family LA341_20205 PF03960 ArsC family LA341_20210 PF01773 Na+ dependent nucleoside transporter N-terminus LA341_20210 PF07662 Na+ dependent nucleoside transporter C-terminus LA341_20210 PF07670 Nucleoside recognition LA341_20230 PF04307 LexA-binding, inner membrane-associated putative hydrolase LA341_20250 PF00290 Tryptophan synthase alpha chain LA341_20255 PF00291 Pyridoxal-phosphate dependent enzyme LA341_20260 PF00218 Indole-3-glycerol phosphate synthase LA341_20260 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LA341_20265 PF02885 Glycosyl transferase family, helical bundle domain LA341_20265 PF00591 Glycosyl transferase family, a/b domain LA341_20270 PF00117 Glutamine amidotransferase class-I LA341_20270 PF02885 Glycosyl transferase family, helical bundle domain LA341_20270 PF00591 Glycosyl transferase family, a/b domain LA341_20275 PF00425 chorismate binding enzyme LA341_20275 PF04715 Anthranilate synthase component I, N terminal region LA341_20280 PF02811 PHP domain LA341_20285 PF01300 Telomere recombination LA341_20290 PF02616 Segregation and condensation protein ScpA LA341_20295 PF04079 Segregation and condensation complex subunit ScpB LA341_20300 PF00849 RNA pseudouridylate synthase LA341_20300 PF01479 S4 domain LA341_20330 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LA341_20335 PF00588 SpoU rRNA Methylase family LA341_20340 PF13840 ACT domain LA341_20340 PF00742 Homoserine dehydrogenase LA341_20340 PF03447 Homoserine dehydrogenase, NAD binding domain LA341_20340 PF01842 ACT domain LA341_20340 PF00696 Amino acid kinase family LA341_20345 PF08544 GHMP kinases C terminal LA341_20345 PF00288 GHMP kinases N terminal domain LA341_20350 PF00291 Pyridoxal-phosphate dependent enzyme LA341_20350 PF14821 Threonine synthase N terminus LA341_20360 PF01797 Transposase IS200 like LA341_20370 PF02028 BCCT, betaine/carnitine/choline family transporter LA341_20375 PF00107 Zinc-binding dehydrogenase LA341_20375 PF16884 N-terminal domain of oxidoreductase LA341_20380 PF00440 Bacterial regulatory proteins, tetR family LA341_20380 PF16925 Tetracyclin repressor-like, C-terminal domain LA341_20385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LA341_20385 PF00356 Bacterial regulatory proteins, lacI family LA341_20390 PF02378 Phosphotransferase system, EIIC LA341_20390 PF00367 phosphotransferase system, EIIB LA341_20395 PF00155 Aminotransferase class I and II LA341_20400 PF02075 Crossover junction endodeoxyribonuclease RuvC LA341_20405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA341_20405 PF02770 Acyl-CoA dehydrogenase, middle domain LA341_20405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA341_20405 PF09317 Domain of unknown function (DUF1974) LA341_20410 PF00440 Bacterial regulatory proteins, tetR family LA341_20425 PF00480 ROK family LA341_20430 PF13181 Tetratricopeptide repeat LA341_20430 PF17128 Domain of unknown function (DUF5107) LA341_20435 PF00083 Sugar (and other) transporter LA341_20440 PF01263 Aldose 1-epimerase LA341_20445 PF08220 DeoR-like helix-turn-helix domain LA341_20445 PF00455 DeoR C terminal sensor domain LA341_20450 PF08013 Tagatose 6 phosphate kinase LA341_20455 PF01380 SIS domain LA341_20460 PF03610 PTS system fructose IIA component LA341_20465 PF01979 Amidohydrolase family LA341_20470 PF01116 Fructose-bisphosphate aldolase class-II LA341_20475 PF03830 PTS system sorbose subfamily IIB component LA341_20480 PF03609 PTS system sorbose-specific iic component LA341_20485 PF03613 PTS system mannose/fructose/sorbose family IID component LA341_20490 PF13580 SIS domain LA341_20495 PF13580 SIS domain LA341_20505 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA341_20505 PF12838 4Fe-4S dicluster domain LA341_20505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA341_20505 PF00384 Molybdopterin oxidoreductase LA341_20505 PF01568 Molydopterin dinucleotide binding domain LA341_20510 PF00465 Iron-containing alcohol dehydrogenase LA341_20515 PF05025 RbsD / FucU transport protein family LA341_20520 PF00596 Class II Aldolase and Adducin N-terminal domain LA341_20525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LA341_20525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LA341_20530 PF07881 L-fucose isomerase, first N-terminal domain LA341_20530 PF07882 L-fucose isomerase, second N-terminal domain LA341_20530 PF02952 L-fucose isomerase, C-terminal domain LA341_20535 PF07690 Major Facilitator Superfamily LA341_20540 PF08220 DeoR-like helix-turn-helix domain LA341_20540 PF00455 DeoR C terminal sensor domain LA341_20545 PF00589 Phage integrase family LA341_20545 PF02899 Phage integrase, N-terminal SAM-like domain LA341_20590 PF04381 Putative exonuclease, RdgC LA341_20625 PF12684 PDDEXK-like domain of unknown function (DUF3799) LA341_20625 PF06630 Enterobacterial exodeoxyribonuclease VIII LA341_20665 PF03374 Phage antirepressor protein KilAC domain LA341_20665 PF09669 Phage regulatory protein Rha (Phage_pRha) LA341_20715 PF05772 NinB protein LA341_20915 PF01668 SmpB protein LA341_20920 PF03364 Polyketide cyclase / dehydrase and lipid transport LA341_20925 PF03658 RnfH family Ubiquitin LA341_20930 PF01546 Peptidase family M20/M25/M40 LA341_20930 PF07687 Peptidase dimerisation domain LA341_20935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA341_20935 PF02770 Acyl-CoA dehydrogenase, middle domain LA341_20935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA341_20935 PF09317 Domain of unknown function (DUF1974) LA341_20940 PF13580 SIS domain LA341_20945 PF13230 Glutamine amidotransferases class-II LA341_20955 PF01933 Uncharacterised protein family UPF0052 LA341_20965 PF09456 RcsC Alpha-Beta-Loop (ABL) LA341_20965 PF00512 His Kinase A (phospho-acceptor) domain LA341_20965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_20965 PF00072 Response regulator receiver domain LA341_20975 PF00196 Bacterial regulatory proteins, luxR family LA341_20975 PF00072 Response regulator receiver domain LA341_20980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA341_20980 PF07730 Histidine kinase LA341_20980 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LA341_20980 PF00672 HAMP domain LA341_20985 PF06463 Molybdenum Cofactor Synthesis C LA341_20985 PF04055 Radical SAM superfamily LA341_20990 PF12838 4Fe-4S dicluster domain LA341_20990 PF13187 4Fe-4S dicluster domain LA341_21000 PF10518 TAT (twin-arginine translocation) pathway signal sequence LA341_21000 PF01568 Molydopterin dinucleotide binding domain LA341_21000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA341_21000 PF00384 Molybdopterin oxidoreductase LA341_21005 PF12800 4Fe-4S binding domain LA341_21005 PF12838 4Fe-4S dicluster domain LA341_21010 PF12801 4Fe-4S binding domain LA341_21010 PF12837 4Fe-4S binding domain LA341_21015 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LA341_21020 PF03264 NapC/NirT cytochrome c family, N-terminal region LA341_21025 PF00994 Probable molybdopterin binding domain LA341_21030 PF01967 MoaC family LA341_21035 PF02597 ThiS family LA341_21040 PF02391 MoaE protein LA341_21050 PF00528 Binding-protein-dependent transport system inner membrane component LA341_21055 PF03459 TOBE domain LA341_21055 PF00005 ABC transporter LA341_21060 PF00561 alpha/beta hydrolase fold LA341_21065 PF06406 StbA protein LA341_21075 PF00899 ThiF family LA341_21080 PF00994 Probable molybdopterin binding domain LA341_21080 PF03453 MoeA N-terminal region (domain I and II) LA341_21080 PF03454 MoeA C-terminal region (domain IV) LA341_21085 PF01227 GTP cyclohydrolase I LA341_21090 PF00672 HAMP domain LA341_21090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA341_21090 PF17200 Single Cache domain 2 LA341_21095 PF01268 Formate--tetrahydrofolate ligase LA341_21105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_21105 PF03466 LysR substrate binding domain LA341_21110 PF04264 YceI-like domain LA341_21120 PF05221 S-adenosyl-L-homocysteine hydrolase LA341_21120 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LA341_21135 PF07687 Peptidase dimerisation domain LA341_21135 PF01546 Peptidase family M20/M25/M40 LA341_21140 PF17810 Arginine decarboxylase helical bundle domain LA341_21140 PF17944 Arginine decarboxylase C-terminal helical extension LA341_21140 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LA341_21150 PF14864 Alkyl sulfatase C-terminal LA341_21150 PF14863 Alkyl sulfatase dimerisation LA341_21150 PF00753 Metallo-beta-lactamase superfamily LA341_21155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA341_21155 PF03466 LysR substrate binding domain