locus-tag class description LA358_00005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA358_00005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA358_00010 PF00764 Arginosuccinate synthase LA358_00020 PF14698 Argininosuccinate lyase C-terminal LA358_00020 PF00206 Lyase LA358_00040 PF07670 Nucleoside recognition LA358_00065 PF07804 HipA-like C-terminal domain LA358_00070 PF13657 HipA N-terminal domain LA358_00075 PF01381 Helix-turn-helix LA358_00080 PF06968 Biotin and Thiamin Synthesis associated domain LA358_00080 PF04055 Radical SAM superfamily LA358_00085 PF05690 Thiazole biosynthesis protein ThiG LA358_00095 PF00899 ThiF family LA358_00100 PF02581 Thiamine monophosphate synthase LA358_00105 PF13667 ThiC-associated domain LA358_00105 PF01964 Radical SAM ThiC family LA358_00110 PF01117 Aerolysin toxin LA358_00110 PF03440 Aerolysin/Pertussis toxin (APT) domain LA358_00125 PF00072 Response regulator receiver domain LA358_00125 PF00486 Transcriptional regulatory protein, C terminal LA358_00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_00135 PF08443 RimK-like ATP-grasp domain LA358_00135 PF18030 RimK PreATP-grasp domain LA358_00140 PF02310 B12 binding domain LA358_00140 PF02607 B12 binding domain LA358_00140 PF02965 Vitamin B12 dependent methionine synthase, activation domain LA358_00140 PF00809 Pterin binding enzyme LA358_00140 PF02574 Homocysteine S-methyltransferase LA358_00145 PF00999 Sodium/hydrogen exchanger family LA358_00150 PF12792 CSS motif domain associated with EAL LA358_00150 PF00563 EAL domain LA358_00155 PF12792 CSS motif domain associated with EAL LA358_00155 PF00563 EAL domain LA358_00160 PF11791 Aconitate B N-terminal domain LA358_00160 PF06434 Aconitate hydratase 2 N-terminus LA358_00160 PF00330 Aconitase family (aconitate hydratase) LA358_00165 PF01734 Patatin-like phospholipase LA358_00170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_00170 PF00672 HAMP domain LA358_00170 PF12729 Four helix bundle sensory module for signal transduction LA358_00180 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_00180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA358_00185 PF02817 e3 binding domain LA358_00185 PF00364 Biotin-requiring enzyme LA358_00185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LA358_00190 PF17831 Pyruvate dehydrogenase E1 component middle domain LA358_00190 PF00456 Transketolase, thiamine diphosphate binding domain LA358_00195 PF07729 FCD domain LA358_00195 PF00392 Bacterial regulatory proteins, gntR family LA358_00200 PF01510 N-acetylmuramoyl-L-alanine amidase LA358_00210 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LA358_00210 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LA358_00220 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LA358_00220 PF00437 Type II/IV secretion system protein LA358_00225 PF00482 Type II secretion system (T2SS), protein F LA358_00230 PF01478 Type IV leader peptidase family LA358_00230 PF06750 Bacterial Peptidase A24 N-terminal domain LA358_00235 PF01121 Dephospho-CoA kinase LA358_00240 PF07072 Cell division protein LA358_00245 PF03884 DNA gyrase inhibitor YacG LA358_00250 PF00293 NUDIX domain LA358_00255 PF01043 SecA preprotein cross-linking domain LA358_00255 PF07517 SecA DEAD-like domain LA358_00255 PF02810 SEC-C motif LA358_00255 PF07516 SecA Wing and Scaffold domain LA358_00265 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LA358_00270 PF00091 Tubulin/FtsZ family, GTPase domain LA358_00270 PF12327 FtsZ family, C-terminal domain LA358_00275 PF02491 SHS2 domain inserted in FTSA LA358_00280 PF03799 Cell division protein FtsQ LA358_00280 PF08478 POTRA domain, FtsQ-type LA358_00285 PF01225 Mur ligase family, catalytic domain LA358_00285 PF02875 Mur ligase family, glutamate ligase domain LA358_00285 PF08245 Mur ligase middle domain LA358_00290 PF03033 Glycosyltransferase family 28 N-terminal domain LA358_00290 PF04101 Glycosyltransferase family 28 C-terminal domain LA358_00295 PF01098 Cell cycle protein LA358_00300 PF08245 Mur ligase middle domain LA358_00300 PF02875 Mur ligase family, glutamate ligase domain LA358_00305 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LA358_00305 PF00953 Glycosyl transferase family 4 LA358_00310 PF01225 Mur ligase family, catalytic domain LA358_00310 PF02875 Mur ligase family, glutamate ligase domain LA358_00310 PF08245 Mur ligase middle domain LA358_00315 PF02875 Mur ligase family, glutamate ligase domain LA358_00315 PF08245 Mur ligase middle domain LA358_00315 PF01225 Mur ligase family, catalytic domain LA358_00320 PF00905 Penicillin binding protein transpeptidase domain LA358_00320 PF03717 Penicillin-binding Protein dimerisation domain LA358_00325 PF04999 Cell division protein FtsL LA358_00330 PF01795 MraW methylase family LA358_00335 PF02381 MraZ protein, putative antitoxin-like LA358_00345 PF01476 LysM domain LA358_00345 PF01464 Transglycosylase SLT domain LA358_00355 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA358_00355 PF00691 OmpA family LA358_00360 PF01618 MotA/TolQ/ExbB proton channel family LA358_00365 PF04542 Sigma-70 region 2 LA358_00365 PF04545 Sigma-70, region 4 LA358_00385 PF02561 Flagellar protein FliS LA358_00390 PF02465 Flagellar hook-associated protein 2 N-terminus LA358_00390 PF07195 Flagellar hook-associated protein 2 C-terminus LA358_00390 PF07196 Flagellin hook IN motif LA358_00395 PF00700 Bacterial flagellin C-terminal helical region LA358_00395 PF00669 Bacterial flagellin N-terminal helical region LA358_00420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_00420 PF00460 Flagella basal body rod protein LA358_00430 PF02119 Flagellar P-ring protein LA358_00435 PF02107 Flagellar L-ring protein LA358_00440 PF00460 Flagella basal body rod protein LA358_00440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_00445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_00445 PF00460 Flagella basal body rod protein LA358_00450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_00450 PF00460 Flagella basal body rod protein LA358_00450 PF07559 Flagellar basal body protein FlaE LA358_00455 PF13860 FlgD Ig-like domain LA358_00455 PF03963 Flagellar hook capping protein - N-terminal region LA358_00455 PF13861 FlgD Tudor-like domain LA358_00460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_00460 PF00460 Flagella basal body rod protein LA358_00465 PF00460 Flagella basal body rod protein LA358_00490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA358_00490 PF18269 T3SS EscN ATPase C-terminal domain LA358_00500 PF14841 FliG middle domain LA358_00500 PF14842 FliG N-terminal domain LA358_00500 PF01706 FliG C-terminal domain LA358_00505 PF01514 Secretory protein of YscJ/FliF family LA358_00505 PF08345 Flagellar M-ring protein C-terminal LA358_00510 PF02049 Flagellar hook-basal body complex protein FliE LA358_00515 PF02954 Bacterial regulatory protein, Fis family LA358_00515 PF00072 Response regulator receiver domain LA358_00515 PF00158 Sigma-54 interaction domain LA358_00520 PF00771 FHIPEP family LA358_00525 PF01312 FlhB HrpN YscU SpaS Family LA358_00530 PF01311 Bacterial export proteins, family 1 LA358_00535 PF01313 Bacterial export proteins, family 3 LA358_00540 PF00813 FliP family LA358_00545 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LA358_00560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA358_00565 PF04348 LppC putative lipoprotein LA358_00570 PF02021 Uncharacterised protein family UPF0102 LA358_00575 PF13580 SIS domain LA358_00580 PF04972 BON domain LA358_00585 PF04386 Stringent starvation protein B LA358_00590 PF02798 Glutathione S-transferase, N-terminal domain LA358_00590 PF00043 Glutathione S-transferase, C-terminal domain LA358_00595 PF02167 Cytochrome C1 family LA358_00600 PF00033 Cytochrome b/b6/petB LA358_00600 PF00032 Cytochrome b(C-terminal)/b6/petD LA358_00605 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LA358_00605 PF00355 Rieske [2Fe-2S] domain LA358_00610 PF00380 Ribosomal protein S9/S16 LA358_00615 PF00572 Ribosomal protein L13 LA358_00620 PF03969 AFG1-like ATPase LA358_00630 PF13180 PDZ domain LA358_00630 PF00595 PDZ domain LA358_00635 PF13180 PDZ domain LA358_00640 PF00381 PTS HPr component phosphorylation site LA358_00645 PF03668 P-loop ATPase protein family LA358_00650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA358_00655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LA358_00660 PF04963 Sigma-54 factor, core binding domain LA358_00660 PF04552 Sigma-54, DNA binding domain LA358_00660 PF00309 Sigma-54 factor, Activator interacting domain (AID) LA358_00665 PF12399 Branched-chain amino acid ATP-binding cassette transporter LA358_00665 PF00005 ABC transporter LA358_00670 PF03968 OstA-like protein LA358_00675 PF06835 Lipopolysaccharide-assembly, LptC-related LA358_00685 PF01380 SIS domain LA358_00685 PF00571 CBS domain LA358_00690 PF00005 ABC transporter LA358_00695 PF02405 Permease MlaE LA358_00700 PF02470 MlaD protein LA358_00705 PF05494 MlaC protein LA358_00715 PF01722 BolA-like protein LA358_00720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LA358_00725 PF01523 Putative modulator of DNA gyrase LA358_00730 PF04751 Protein of unknown function (DUF615) LA358_00735 PF07722 Peptidase C26 LA358_00745 PF00027 Cyclic nucleotide-binding domain LA358_00745 PF07885 Ion channel LA358_00750 PF13419 Haloacid dehalogenase-like hydrolase LA358_00755 PF02899 Phage integrase, N-terminal SAM-like domain LA358_00755 PF00589 Phage integrase family LA358_00765 PF01678 Diaminopimelate epimerase LA358_00770 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LA358_00770 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LA358_00780 PF01491 Frataxin-like domain LA358_00785 PF02230 Phospholipase/Carboxylesterase LA358_00790 PF12633 Adenylate cyclase NT domain LA358_00790 PF01295 Adenylate cyclase, class-I LA358_00795 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LA358_00795 PF03900 Porphobilinogen deaminase, C-terminal domain LA358_00800 PF02602 Uroporphyrinogen-III synthase HemD LA358_00805 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LA358_00820 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LA358_00830 PF00768 D-alanyl-D-alanine carboxypeptidase LA358_00840 PF07715 TonB-dependent Receptor Plug Domain LA358_00840 PF00593 TonB dependent receptor LA358_00860 PF03739 Lipopolysaccharide export system permease LptF/LptG LA358_00865 PF03739 Lipopolysaccharide export system permease LptF/LptG LA358_00870 PF00883 Cytosol aminopeptidase family, catalytic domain LA358_00870 PF02789 Cytosol aminopeptidase family, N-terminal domain LA358_00875 PF04364 DNA polymerase III chi subunit, HolC LA358_00880 PF08264 Anticodon-binding domain of tRNA LA358_00880 PF00133 tRNA synthetases class I (I, L, M and V) LA358_00880 PF10458 Valyl tRNA synthetase tRNA binding arm LA358_00895 PF00583 Acetyltransferase (GNAT) family LA358_00900 PF00199 Catalase LA358_00900 PF06628 Catalase-related immune-responsive LA358_00915 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_00920 PF00196 Bacterial regulatory proteins, luxR family LA358_00925 PF00579 tRNA synthetases class I (W and Y) LA358_00925 PF01479 S4 domain LA358_00940 PF00141 Peroxidase LA358_00945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_00945 PF12793 Sugar transport-related sRNA regulator N-term LA358_00955 PF01053 Cys/Met metabolism PLP-dependent enzyme LA358_00970 PF00990 Diguanylate cyclase, GGDEF domain LA358_00980 PF00005 ABC transporter LA358_00980 PF08402 TOBE domain LA358_00990 PF00528 Binding-protein-dependent transport system inner membrane component LA358_01005 PF00392 Bacterial regulatory proteins, gntR family LA358_01005 PF07702 UTRA domain LA358_01015 PF03606 C4-dicarboxylate anaerobic carrier LA358_01020 PF00990 Diguanylate cyclase, GGDEF domain LA358_01030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA358_01035 PF13614 AAA domain LA358_01040 PF13538 UvrD-like helicase C-terminal domain LA358_01045 PF13361 UvrD-like helicase C-terminal domain LA358_01045 PF00580 UvrD/REP helicase N-terminal domain LA358_01045 PF12705 PD-(D/E)XK nuclease superfamily LA358_01050 PF17946 RecC C-terminal domain LA358_01055 PF07681 DoxX LA358_01060 PF02678 Pirin LA358_01060 PF17954 Quercetinase C-terminal cupin domain LA358_01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_01070 PF03466 LysR substrate binding domain LA358_01080 PF00072 Response regulator receiver domain LA358_01080 PF00486 Transcriptional regulatory protein, C terminal LA358_01085 PF00672 HAMP domain LA358_01085 PF00512 His Kinase A (phospho-acceptor) domain LA358_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_01090 PF07715 TonB-dependent Receptor Plug Domain LA358_01090 PF00593 TonB dependent receptor LA358_01120 PF01196 Ribosomal protein L17 LA358_01125 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LA358_01125 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LA358_01125 PF01000 RNA polymerase Rpb3/RpoA insert domain LA358_01130 PF01479 S4 domain LA358_01130 PF00163 Ribosomal protein S4/S9 N-terminal domain LA358_01135 PF00411 Ribosomal protein S11 LA358_01140 PF00416 Ribosomal protein S13/S18 LA358_01145 PF00444 Ribosomal protein L36 LA358_01150 PF00344 SecY translocase LA358_01155 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LA358_01160 PF00327 Ribosomal protein L30p/L7e LA358_01165 PF03719 Ribosomal protein S5, C-terminal domain LA358_01165 PF00333 Ribosomal protein S5, N-terminal domain LA358_01170 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LA358_01175 PF00347 Ribosomal protein L6 LA358_01180 PF00410 Ribosomal protein S8 LA358_01185 PF00253 Ribosomal protein S14p/S29e LA358_01190 PF00673 ribosomal L5P family C-terminus LA358_01190 PF00281 Ribosomal protein L5 LA358_01195 PF00467 KOW motif LA358_01195 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LA358_01200 PF00238 Ribosomal protein L14p/L23e LA358_01205 PF00366 Ribosomal protein S17 LA358_01210 PF00831 Ribosomal L29 protein LA358_01215 PF00252 Ribosomal protein L16p/L10e LA358_01220 PF07650 KH domain LA358_01220 PF00189 Ribosomal protein S3, C-terminal domain LA358_01225 PF00237 Ribosomal protein L22p/L17e LA358_01230 PF00203 Ribosomal protein S19 LA358_01235 PF00181 Ribosomal Proteins L2, RNA binding domain LA358_01235 PF03947 Ribosomal Proteins L2, C-terminal domain LA358_01240 PF00276 Ribosomal protein L23 LA358_01245 PF00573 Ribosomal protein L4/L1 family LA358_01250 PF00297 Ribosomal protein L3 LA358_01255 PF00338 Ribosomal protein S10p/S20e LA358_01265 PF00672 HAMP domain LA358_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_01265 PF00512 His Kinase A (phospho-acceptor) domain LA358_01270 PF00486 Transcriptional regulatory protein, C terminal LA358_01270 PF00072 Response regulator receiver domain LA358_01275 PF01272 Transcription elongation factor, GreA/GreB, C-term LA358_01275 PF03449 Transcription elongation factor, N-terminal LA358_01280 PF17674 HHH domain LA358_01280 PF00575 S1 RNA binding domain LA358_01280 PF09371 Tex-like protein N-terminal domain LA358_01280 PF16921 Tex protein YqgF-like domain LA358_01300 PF00561 alpha/beta hydrolase fold LA358_01305 PF00156 Phosphoribosyl transferase domain LA358_01310 PF01521 Iron-sulphur cluster biosynthesis LA358_01310 PF01106 NifU-like domain LA358_01315 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LA358_01315 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LA358_01320 PF02556 Preprotein translocase subunit SecB LA358_01325 PF00581 Rhodanese-like domain LA358_01330 PF01676 Metalloenzyme superfamily LA358_01330 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LA358_01335 PF01551 Peptidase family M23 LA358_01345 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LA358_01345 PF00356 Bacterial regulatory proteins, lacI family LA358_01350 PF01081 KDPG and KHG aldolase LA358_01355 PF00920 Dehydratase family LA358_01360 PF01202 Shikimate kinase LA358_01365 PF02447 GntP family permease LA358_01370 PF13091 PLD-like domain LA358_01375 PF00270 DEAD/DEAH box helicase LA358_01375 PF00271 Helicase conserved C-terminal domain LA358_01375 PF17191 RecG wedge domain LA358_01385 PF09500 Putative thioesterase (yiiD_Cterm) LA358_01385 PF00583 Acetyltransferase (GNAT) family LA358_01390 PF00398 Ribosomal RNA adenine dimethylase LA358_01395 PF02580 D-Tyr-tRNA(Tyr) deacylase LA358_01400 PF03631 Virulence factor BrkB LA358_01405 PF00390 Malic enzyme, N-terminal domain LA358_01405 PF03949 Malic enzyme, NAD binding domain LA358_01410 PF11066 Protein of unknown function (DUF2867) LA358_01410 PF13460 NAD(P)H-binding LA358_01420 PF00270 DEAD/DEAH box helicase LA358_01420 PF00271 Helicase conserved C-terminal domain LA358_01420 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LA358_01420 PF17764 3′ DNA-binding domain (3′BD) LA358_01420 PF18074 Primosomal protein N C-terminal domain LA358_01425 PF01197 Ribosomal protein L31 LA358_01435 PF03737 Aldolase/RraA LA358_01440 PF02592 Putative vitamin uptake transporter LA358_01450 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LA358_01455 PF00034 Cytochrome c LA358_01460 PF00270 DEAD/DEAH box helicase LA358_01460 PF00271 Helicase conserved C-terminal domain LA358_01460 PF00570 HRDC domain LA358_01460 PF16124 RecQ zinc-binding LA358_01460 PF09382 RQC domain LA358_01465 PF03061 Thioesterase superfamily LA358_01480 PF03473 MOSC domain LA358_01480 PF03475 3-alpha domain LA358_01485 PF00528 Binding-protein-dependent transport system inner membrane component LA358_01490 PF00528 Binding-protein-dependent transport system inner membrane component LA358_01495 PF00005 ABC transporter LA358_01495 PF08402 TOBE domain LA358_01500 PF13416 Bacterial extracellular solute-binding protein LA358_01505 PF13416 Bacterial extracellular solute-binding protein LA358_01510 PF00202 Aminotransferase class-III LA358_01515 PF00120 Glutamine synthetase, catalytic domain LA358_01520 PF01258 Prokaryotic dksA/traR C4-type zinc finger LA358_01530 PF05981 CreA protein LA358_01540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA358_01540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA358_01545 PF00012 Hsp70 protein LA358_01555 PF16221 winged helix-turn-helix LA358_01555 PF16254 Domain of unknown function (DUF4910) LA358_01555 PF09940 Domain of unknown function (DUF2172) LA358_01575 PF00128 Alpha amylase, catalytic domain LA358_01575 PF02903 Alpha amylase, N-terminal ig-like domain LA358_01590 PF05958 tRNA (Uracil-5-)-methyltransferase LA358_01595 PF02653 Branched-chain amino acid transport system / permease component LA358_01600 PF00005 ABC transporter LA358_01605 PF13407 Periplasmic binding protein domain LA358_01610 PF00703 Glycosyl hydrolases family 2 LA358_01610 PF16353 Domain of unknown function(DUF4981) LA358_01610 PF02929 Beta galactosidase small chain LA358_01610 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LA358_01610 PF02837 Glycosyl hydrolases family 2, sugar binding domain LA358_01615 PF00356 Bacterial regulatory proteins, lacI family LA358_01620 PF16363 GDP-mannose 4,6 dehydratase LA358_01625 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LA358_01625 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LA358_01630 PF00288 GHMP kinases N terminal domain LA358_01630 PF10509 Galactokinase galactose-binding signature LA358_01630 PF08544 GHMP kinases C terminal LA358_01635 PF01263 Aldose 1-epimerase LA358_01640 PF02673 Bacitracin resistance protein BacA LA358_01645 PF03485 Arginyl tRNA synthetase N terminal domain LA358_01645 PF00750 tRNA synthetases class I (R) LA358_01645 PF05746 DALR anticodon binding domain LA358_01655 PF00227 Proteasome subunit LA358_01660 PF10431 C-terminal, D2-small domain, of ClpB protein LA358_01660 PF07724 AAA domain (Cdc48 subfamily) LA358_01660 PF00004 ATPase family associated with various cellular activities (AAA) LA358_01670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_01675 PF00005 ABC transporter LA358_01690 PF18267 Rubredoxin NAD+ reductase C-terminal domain LA358_01690 PF04324 BFD-like [2Fe-2S] binding domain LA358_01690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LA358_01690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LA358_01690 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_01700 PF13806 Rieske-like [2Fe-2S] domain LA358_01705 PF01226 Formate/nitrite transporter LA358_01710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA358_01710 PF14824 Sirohaem biosynthesis protein central LA358_01710 PF10414 Sirohaem synthase dimerisation region LA358_01715 PF03448 MgtE intracellular N domain LA358_01715 PF01769 Divalent cation transporter LA358_01715 PF00571 CBS domain LA358_01725 PF00717 Peptidase S24-like LA358_01725 PF01726 LexA DNA binding domain LA358_01730 PF01553 Acyltransferase LA358_01735 PF01040 UbiA prenyltransferase family LA358_01740 PF04345 Chorismate lyase LA358_01745 PF03748 Flagellar basal body-associated protein FliL LA358_01760 PF08240 Alcohol dehydrogenase GroES-like domain LA358_01760 PF00107 Zinc-binding dehydrogenase LA358_01765 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LA358_01770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LA358_01775 PF00535 Glycosyl transferase family 2 LA358_01780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LA358_01785 PF01467 Cytidylyltransferase-like LA358_01790 PF04393 Protein of unknown function (DUF535) LA358_01795 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LA358_01795 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LA358_01795 PF06827 Zinc finger found in FPG and IleRS LA358_01805 PF00471 Ribosomal protein L33 LA358_01810 PF00830 Ribosomal L28 family LA358_01815 PF04002 RadC-like JAB domain LA358_01820 PF04127 DNA / pantothenate metabolism flavoprotein LA358_01820 PF02441 Flavoprotein LA358_01825 PF00692 dUTPase LA358_01830 PF00440 Bacterial regulatory proteins, tetR family LA358_01850 PF00924 Mechanosensitive ion channel LA358_01850 PF05552 Conserved TM helix LA358_01855 PF00342 Phosphoglucose isomerase LA358_01860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LA358_01860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LA358_01865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_01865 PF03466 LysR substrate binding domain LA358_01880 PF13607 Succinyl-CoA ligase like flavodoxin domain LA358_01880 PF00583 Acetyltransferase (GNAT) family LA358_01880 PF13380 CoA binding domain LA358_01910 PF01177 Asp/Glu/Hydantoin racemase LA358_01915 PF00593 TonB dependent receptor LA358_01915 PF07715 TonB-dependent Receptor Plug Domain LA358_01920 PF03466 LysR substrate binding domain LA358_01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_01935 PF00731 AIR carboxylase LA358_01940 PF02222 ATP-grasp domain LA358_01940 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LA358_01945 PF07690 Major Facilitator Superfamily LA358_01950 PF04397 LytTr DNA-binding domain LA358_01950 PF00072 Response regulator receiver domain LA358_01955 PF07694 5TMR of 5TMR-LYT LA358_01955 PF06580 Histidine kinase LA358_01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_01960 PF01810 LysE type translocator LA358_01970 PF00210 Ferritin-like domain LA358_01975 PF07055 Enoyl reductase FAD binding domain LA358_01975 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LA358_01975 PF12241 Trans-2-enoyl-CoA reductase catalytic region LA358_01980 PF00582 Universal stress protein family LA358_01985 PF00579 tRNA synthetases class I (W and Y) LA358_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_01990 PF03466 LysR substrate binding domain LA358_02010 PF00892 EamA-like transporter family LA358_02025 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LA358_02030 PF00625 Guanylate kinase LA358_02035 PF01192 RNA polymerase Rpb6 LA358_02040 PF13291 ACT domain LA358_02040 PF04607 Region found in RelA / SpoT proteins LA358_02040 PF02824 TGS domain LA358_02045 PF00588 SpoU rRNA Methylase family LA358_02045 PF12105 SpoU, rRNA methylase, C-terminal LA358_02050 PF00132 Bacterial transferase hexapeptide (six repeats) LA358_02055 PF12146 Serine aminopeptidase, S33 LA358_02070 PF02743 Cache domain LA358_02070 PF00672 HAMP domain LA358_02070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_02075 PF02954 Bacterial regulatory protein, Fis family LA358_02075 PF00072 Response regulator receiver domain LA358_02075 PF14532 Sigma-54 interaction domain LA358_02080 PF00512 His Kinase A (phospho-acceptor) domain LA358_02080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_02080 PF00672 HAMP domain LA358_02090 PF07690 Major Facilitator Superfamily LA358_02095 PF00224 Pyruvate kinase, barrel domain LA358_02095 PF02887 Pyruvate kinase, alpha/beta domain LA358_02125 PF00440 Bacterial regulatory proteins, tetR family LA358_02130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_02135 PF00873 AcrB/AcrD/AcrF family LA358_02140 PF00175 Oxidoreductase NAD-binding domain LA358_02145 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LA358_02155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA358_02155 PF07498 Rho termination factor, N-terminal domain LA358_02155 PF07497 Rho termination factor, RNA-binding domain LA358_02160 PF00085 Thioredoxin LA358_02165 PF00271 Helicase conserved C-terminal domain LA358_02165 PF00270 DEAD/DEAH box helicase LA358_02170 PF02541 Ppx/GppA phosphatase family LA358_02180 PF04445 Putative SAM-dependent methyltransferase LA358_02185 PF00563 EAL domain LA358_02185 PF00990 Diguanylate cyclase, GGDEF domain LA358_02185 PF03707 Bacterial signalling protein N terminal repeat LA358_02190 PF01432 Peptidase family M3 LA358_02195 PF00490 Delta-aminolevulinic acid dehydratase LA358_02200 PF01026 TatD related DNase LA358_02205 PF00902 Sec-independent protein translocase protein (TatC) LA358_02210 PF02416 mttA/Hcf106 family LA358_02215 PF02416 mttA/Hcf106 family LA358_02220 PF03109 ABC1 family LA358_02225 PF02036 SCP-2 sterol transfer family LA358_02230 PF01209 ubiE/COQ5 methyltransferase family LA358_02235 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LA358_02240 PF07969 Amidohydrolase family LA358_02245 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LA358_02285 PF03544 Gram-negative bacterial TonB protein C-terminal LA358_02290 PF02472 Biopolymer transport protein ExbD/TolR LA358_02295 PF01618 MotA/TolQ/ExbB proton channel family LA358_02300 PF01618 MotA/TolQ/ExbB proton channel family LA358_02310 PF03472 Autoinducer binding domain LA358_02310 PF00196 Bacterial regulatory proteins, luxR family LA358_02315 PF01380 SIS domain LA358_02320 PF00455 DeoR C terminal sensor domain LA358_02320 PF08220 DeoR-like helix-turn-helix domain LA358_02325 PF00072 Response regulator receiver domain LA358_02325 PF00486 Transcriptional regulatory protein, C terminal LA358_02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_02330 PF00512 His Kinase A (phospho-acceptor) domain LA358_02330 PF00672 HAMP domain LA358_02335 PF06123 Inner membrane protein CreD LA358_02340 PF00132 Bacterial transferase hexapeptide (six repeats) LA358_02340 PF14602 Hexapeptide repeat of succinyl-transferase LA358_02340 PF12804 MobA-like NTP transferase domain LA358_02345 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LA358_02345 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LA358_02350 PF02874 ATP synthase alpha/beta family, beta-barrel domain LA358_02350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA358_02355 PF00231 ATP synthase LA358_02360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA358_02360 PF00306 ATP synthase alpha/beta chain, C terminal domain LA358_02360 PF02874 ATP synthase alpha/beta family, beta-barrel domain LA358_02365 PF00213 ATP synthase delta (OSCP) subunit LA358_02370 PF00430 ATP synthase B/B' CF(0) LA358_02375 PF00137 ATP synthase subunit C LA358_02380 PF00119 ATP synthase A chain LA358_02390 PF02195 ParB-like nuclease domain LA358_02390 PF17762 HTH domain found in ParB protein LA358_02395 PF13614 AAA domain LA358_02400 PF02527 rRNA small subunit methyltransferase G LA358_02405 PF01134 Glucose inhibited division protein A LA358_02405 PF13932 GidA associated domain LA358_02410 PF00258 Flavodoxin LA358_02415 PF00593 TonB dependent receptor LA358_02415 PF07715 TonB-dependent Receptor Plug Domain LA358_02420 PF00005 ABC transporter LA358_02425 PF00005 ABC transporter LA358_02430 PF01497 Periplasmic binding protein LA358_02435 PF01032 FecCD transport family LA358_02440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_02440 PF03466 LysR substrate binding domain LA358_02445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA358_02450 PF01810 LysE type translocator LA358_02455 PF01926 50S ribosome-binding GTPase LA358_02455 PF12631 MnmE helical domain LA358_02455 PF10396 GTP-binding protein TrmE N-terminus LA358_02460 PF02096 60Kd inner membrane protein LA358_02460 PF14849 YidC periplasmic domain LA358_02465 PF01809 Putative membrane protein insertion efficiency factor LA358_02470 PF00825 Ribonuclease P LA358_02475 PF00468 Ribosomal protein L34 LA358_02480 PF00005 ABC transporter LA358_02485 PF00528 Binding-protein-dependent transport system inner membrane component LA358_02490 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_02495 PF08299 Bacterial dnaA protein helix-turn-helix LA358_02495 PF11638 DnaA N-terminal domain LA358_02495 PF00308 Bacterial dnaA protein LA358_02500 PF00712 DNA polymerase III beta subunit, N-terminal domain LA358_02500 PF02767 DNA polymerase III beta subunit, central domain LA358_02500 PF02768 DNA polymerase III beta subunit, C-terminal domain LA358_02505 PF02463 RecF/RecN/SMC N terminal domain LA358_02510 PF00204 DNA gyrase B LA358_02510 PF00986 DNA gyrase B subunit, carboxyl terminus LA358_02510 PF18053 DNA gyrase B subunit insert domain LA358_02510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_02510 PF01751 Toprim domain LA358_02515 PF00011 Hsp20/alpha crystallin family LA358_02520 PF00011 Hsp20/alpha crystallin family LA358_02525 PF00155 Aminotransferase class I and II LA358_02540 PF07690 Major Facilitator Superfamily LA358_02545 PF00072 Response regulator receiver domain LA358_02545 PF00486 Transcriptional regulatory protein, C terminal LA358_02550 PF02702 Osmosensitive K+ channel His kinase sensor domain LA358_02550 PF00512 His Kinase A (phospho-acceptor) domain LA358_02550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_02550 PF13492 GAF domain LA358_02550 PF13493 Domain of unknown function (DUF4118) LA358_02555 PF02669 K+-transporting ATPase, c chain LA358_02565 PF03814 Potassium-transporting ATPase A subunit LA358_02575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA358_02575 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_02580 PF01627 Hpt domain LA358_02580 PF00512 His Kinase A (phospho-acceptor) domain LA358_02580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_02580 PF00072 Response regulator receiver domain LA358_02580 PF17149 Periplasmic sensor domain found in signal transduction proteins LA358_02580 PF00672 HAMP domain LA358_02585 PF04380 Membrane fusogenic activity LA358_02590 PF01694 Rhomboid family LA358_02590 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LA358_02595 PF00581 Rhodanese-like domain LA358_02610 PF00005 ABC transporter LA358_02615 PF12399 Branched-chain amino acid ATP-binding cassette transporter LA358_02615 PF00005 ABC transporter LA358_02620 PF02653 Branched-chain amino acid transport system / permease component LA358_02620 PF11862 Domain of unknown function (DUF3382) LA358_02625 PF02653 Branched-chain amino acid transport system / permease component LA358_02630 PF13458 Periplasmic binding protein LA358_02635 PF00356 Bacterial regulatory proteins, lacI family LA358_02640 PF12801 4Fe-4S binding domain LA358_02645 PF03222 Tryptophan/tyrosine permease family LA358_02670 PF02092 Glycyl-tRNA synthetase beta subunit LA358_02670 PF05746 DALR anticodon binding domain LA358_02675 PF02091 Glycyl-tRNA synthetase alpha subunit LA358_02680 PF03352 Methyladenine glycosylase LA358_02685 PF13488 Glycine zipper LA358_02685 PF00691 OmpA family LA358_02690 PF01042 Endoribonuclease L-PSP LA358_02695 PF01206 Sulfurtransferase TusA LA358_02705 PF01547 Bacterial extracellular solute-binding protein LA358_02710 PF00512 His Kinase A (phospho-acceptor) domain LA358_02710 PF00672 HAMP domain LA358_02710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_02715 PF00486 Transcriptional regulatory protein, C terminal LA358_02715 PF00072 Response regulator receiver domain LA358_02720 PF02803 Thiolase, C-terminal domain LA358_02720 PF00108 Thiolase, N-terminal domain LA358_02725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LA358_02725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LA358_02725 PF00378 Enoyl-CoA hydratase/isomerase LA358_02730 PF00501 AMP-binding enzyme LA358_02730 PF13193 AMP-binding enzyme C-terminal domain LA358_02735 PF00557 Metallopeptidase family M24 LA358_02740 PF09186 Domain of unknown function (DUF1949) LA358_02740 PF01205 Uncharacterized protein family UPF0029 LA358_02745 PF02386 Cation transport protein LA358_02750 PF12724 Flavodoxin domain LA358_02780 PF00899 ThiF family LA358_02785 PF02657 Fe-S metabolism associated domain LA358_02790 PF00266 Aminotransferase class-V LA358_02795 PF00580 UvrD/REP helicase N-terminal domain LA358_02795 PF13361 UvrD-like helicase C-terminal domain LA358_02800 PF03707 Bacterial signalling protein N terminal repeat LA358_02800 PF00990 Diguanylate cyclase, GGDEF domain LA358_02800 PF00563 EAL domain LA358_02805 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LA358_02810 PF08240 Alcohol dehydrogenase GroES-like domain LA358_02810 PF00107 Zinc-binding dehydrogenase LA358_02815 PF00155 Aminotransferase class I and II LA358_02820 PF08360 QacR-like protein, C-terminal region LA358_02820 PF00440 Bacterial regulatory proteins, tetR family LA358_02825 PF01370 NAD dependent epimerase/dehydratase family LA358_02850 PF00132 Bacterial transferase hexapeptide (six repeats) LA358_02885 PF14001 YdfZ protein LA358_02910 PF13361 UvrD-like helicase C-terminal domain LA358_02910 PF00580 UvrD/REP helicase N-terminal domain LA358_02915 PF02608 ABC transporter substrate-binding protein PnrA-like LA358_02920 PF00005 ABC transporter LA358_02925 PF02653 Branched-chain amino acid transport system / permease component LA358_02930 PF02653 Branched-chain amino acid transport system / permease component LA358_02935 PF02630 SCO1/SenC LA358_02940 PF01554 MatE LA358_02945 PF00588 SpoU rRNA Methylase family LA358_02950 PF00512 His Kinase A (phospho-acceptor) domain LA358_02950 PF00672 HAMP domain LA358_02950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_02950 PF16527 Two-component sensor protein CpxA, periplasmic domain LA358_02955 PF00072 Response regulator receiver domain LA358_02955 PF00486 Transcriptional regulatory protein, C terminal LA358_02960 PF01545 Cation efflux family LA358_02960 PF16916 Dimerisation domain of Zinc Transporter LA358_02965 PF00132 Bacterial transferase hexapeptide (six repeats) LA358_02965 PF06426 Serine acetyltransferase, N-terminal LA358_02975 PF06005 Cell division protein ZapB LA358_02985 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LA358_02985 PF01612 3'-5' exonuclease LA358_02985 PF01367 5'-3' exonuclease, C-terminal SAM fold LA358_02985 PF00476 DNA polymerase family A LA358_02990 PF00132 Bacterial transferase hexapeptide (six repeats) LA358_03025 PF00356 Bacterial regulatory proteins, lacI family LA358_03030 PF00703 Glycosyl hydrolases family 2 LA358_03030 PF02837 Glycosyl hydrolases family 2, sugar binding domain LA358_03030 PF16353 Domain of unknown function(DUF4981) LA358_03030 PF02929 Beta galactosidase small chain LA358_03030 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LA358_03035 PF04074 YhcH/YjgK/YiaL LA358_03040 PF13520 Amino acid permease LA358_03045 PF01588 Putative tRNA binding domain LA358_03050 PF13520 Amino acid permease LA358_03055 PF13593 SBF-like CPA transporter family (DUF4137) LA358_03060 PF12867 DinB superfamily LA358_03060 PF03781 Sulfatase-modifying factor enzyme 1 LA358_03070 PF00756 Putative esterase LA358_03075 PF00107 Zinc-binding dehydrogenase LA358_03075 PF08240 Alcohol dehydrogenase GroES-like domain LA358_03080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_03080 PF03466 LysR substrate binding domain LA358_03085 PF08340 Domain of unknown function (DUF1732) LA358_03085 PF03755 YicC-like family, N-terminal region LA358_03090 PF01138 3' exoribonuclease family, domain 1 LA358_03090 PF03725 3' exoribonuclease family, domain 2 LA358_03095 PF00156 Phosphoribosyl transferase domain LA358_03100 PF00403 Heavy-metal-associated domain LA358_03105 PF00376 MerR family regulatory protein LA358_03105 PF09278 MerR, DNA binding LA358_03110 PF00563 EAL domain LA358_03110 PF01590 GAF domain LA358_03110 PF00990 Diguanylate cyclase, GGDEF domain LA358_03110 PF00360 Phytochrome region LA358_03115 PF06288 Protein of unknown function (DUF1040) LA358_03120 PF13746 4Fe-4S dicluster domain LA358_03120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LA358_03120 PF12801 4Fe-4S binding domain LA358_03125 PF01636 Phosphotransferase enzyme family LA358_03130 PF01323 DSBA-like thioredoxin domain LA358_03135 PF00528 Binding-protein-dependent transport system inner membrane component LA358_03140 PF00005 ABC transporter LA358_03150 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LA358_03150 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LA358_03155 PF00857 Isochorismatase family LA358_03165 PF04463 Protein of unknown function (DUF523) LA358_03170 PF01553 Acyltransferase LA358_03175 PF01553 Acyltransferase LA358_03180 PF01078 Magnesium chelatase, subunit ChlI LA358_03180 PF13335 Magnesium chelatase, subunit ChlI C-terminal LA358_03185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA358_03185 PF00205 Thiamine pyrophosphate enzyme, central domain LA358_03185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LA358_03195 PF01063 Amino-transferase class IV LA358_03200 PF00920 Dehydratase family LA358_03205 PF00291 Pyridoxal-phosphate dependent enzyme LA358_03205 PF00585 C-terminal regulatory domain of Threonine dehydratase LA358_03215 PF00440 Bacterial regulatory proteins, tetR family LA358_03220 PF00691 OmpA family LA358_03220 PF01389 OmpA-like transmembrane domain LA358_03225 PF04143 Sulphur transport LA358_03230 PF01810 LysE type translocator LA358_03235 PF12833 Helix-turn-helix domain LA358_03240 PF00892 EamA-like transporter family LA358_03250 PF00171 Aldehyde dehydrogenase family LA358_03255 PF07883 Cupin domain LA358_03255 PF01381 Helix-turn-helix LA358_03260 PF00202 Aminotransferase class-III LA358_03265 PF00171 Aldehyde dehydrogenase family LA358_03270 PF00117 Glutamine amidotransferase class-I LA358_03270 PF00958 GMP synthase C terminal domain LA358_03270 PF02540 NAD synthase LA358_03275 PF03466 LysR substrate binding domain LA358_03275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_03280 PF00294 pfkB family carbohydrate kinase LA358_03285 PF02082 Transcriptional regulator LA358_03300 PF02646 RmuC family LA358_03310 PF00962 Adenosine/AMP deaminase LA358_03315 PF00072 Response regulator receiver domain LA358_03315 PF02954 Bacterial regulatory protein, Fis family LA358_03315 PF00158 Sigma-54 interaction domain LA358_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_03320 PF00989 PAS fold LA358_03320 PF00512 His Kinase A (phospho-acceptor) domain LA358_03330 PF00120 Glutamine synthetase, catalytic domain LA358_03330 PF03951 Glutamine synthetase, beta-Grasp domain LA358_03335 PF00679 Elongation factor G C-terminus LA358_03335 PF00009 Elongation factor Tu GTP binding domain LA358_03335 PF03144 Elongation factor Tu domain 2 LA358_03340 PF02386 Cation transport protein LA358_03345 PF02080 TrkA-C domain LA358_03345 PF02254 TrkA-N domain LA358_03350 PF01189 16S rRNA methyltransferase RsmB/F LA358_03350 PF01029 NusB family LA358_03355 PF00551 Formyl transferase LA358_03355 PF02911 Formyl transferase, C-terminal domain LA358_03360 PF01327 Polypeptide deformylase LA358_03365 PF01476 LysM domain LA358_03370 PF02481 DNA recombination-mediator protein A LA358_03370 PF17782 DprA winged helix domain LA358_03375 PF04361 Protein of unknown function (DUF494) LA358_03380 PF01396 Topoisomerase DNA binding C4 zinc finger LA358_03385 PF01300 Telomere recombination LA358_03390 PF01218 Coproporphyrinogen III oxidase LA358_03395 PF08501 Shikimate dehydrogenase substrate binding domain LA358_03395 PF01488 Shikimate / quinate 5-dehydrogenase LA358_03395 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LA358_03405 PF01926 50S ribosome-binding GTPase LA358_03410 PF00034 Cytochrome c LA358_03415 PF04220 Der GTPase activator (YihI) LA358_03420 PF10675 Protein of unknown function (DUF2489) LA358_03425 PF06969 HemN C-terminal domain LA358_03425 PF04055 Radical SAM superfamily LA358_03450 PF00696 Amino acid kinase family LA358_03455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA358_03455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA358_03460 PF03606 C4-dicarboxylate anaerobic carrier LA358_03465 PF01316 Arginine repressor, DNA binding domain LA358_03465 PF02863 Arginine repressor, C-terminal domain LA358_03470 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LA358_03470 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LA358_03475 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA358_03475 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA358_03490 PF02743 Cache domain LA358_03490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_03490 PF00672 HAMP domain LA358_03495 PF08212 Lipocalin-like domain LA358_03500 PF06719 AraC-type transcriptional regulator N-terminus LA358_03500 PF12833 Helix-turn-helix domain LA358_03505 PF00465 Iron-containing alcohol dehydrogenase LA358_03510 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LA358_03510 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LA358_03510 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LA358_03515 PF02233 NAD(P) transhydrogenase beta subunit LA358_03520 PF03313 Serine dehydratase alpha chain LA358_03525 PF00375 Sodium:dicarboxylate symporter family LA358_03530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA358_03530 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_03535 PF13525 Outer membrane lipoprotein LA358_03540 PF00849 RNA pseudouridylate synthase LA358_03540 PF01479 S4 domain LA358_03545 PF02578 Multi-copper polyphenol oxidoreductase laccase LA358_03550 PF00004 ATPase family associated with various cellular activities (AAA) LA358_03550 PF07724 AAA domain (Cdc48 subfamily) LA358_03550 PF17871 AAA lid domain LA358_03550 PF10431 C-terminal, D2-small domain, of ClpB protein LA358_03550 PF02861 Clp amino terminal domain, pathogenicity island component LA358_03555 PF03590 Aspartate-ammonia ligase LA358_03560 PF01037 Lrp/AsnC ligand binding domain LA358_03570 PF10063 Uncharacterized integral membrane protein (DUF2301) LA358_03575 PF01368 DHH family LA358_03575 PF02272 DHHA1 domain LA358_03575 PF01743 Poly A polymerase head domain LA358_03575 PF00571 CBS domain LA358_03595 PF00512 His Kinase A (phospho-acceptor) domain LA358_03595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_03605 PF00072 Response regulator receiver domain LA358_03605 PF00158 Sigma-54 interaction domain LA358_03610 PF06496 Protein of unknown function (DUF1097) LA358_03615 PF00174 Oxidoreductase molybdopterin binding domain LA358_03620 PF01794 Ferric reductase like transmembrane component LA358_03635 PF00072 Response regulator receiver domain LA358_03635 PF00486 Transcriptional regulatory protein, C terminal LA358_03640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_03650 PF00384 Molybdopterin oxidoreductase LA358_03650 PF01568 Molydopterin dinucleotide binding domain LA358_03650 PF18364 Molybdopterin oxidoreductase N-terminal domain LA358_03655 PF03264 NapC/NirT cytochrome c family, N-terminal region LA358_03660 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_03660 PF00512 His Kinase A (phospho-acceptor) domain LA358_03670 PF01131 DNA topoisomerase LA358_03670 PF01751 Toprim domain LA358_03690 PF02386 Cation transport protein LA358_03695 PF02080 TrkA-C domain LA358_03695 PF02254 TrkA-N domain LA358_03700 PF01565 FAD binding domain LA358_03700 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LA358_03705 PF02237 Biotin protein ligase C terminal domain LA358_03705 PF03099 Biotin/lipoate A/B protein ligase family LA358_03705 PF08279 HTH domain LA358_03710 PF00485 Phosphoribulokinase / Uridine kinase family LA358_03730 PF03144 Elongation factor Tu domain 2 LA358_03730 PF00009 Elongation factor Tu GTP binding domain LA358_03730 PF03143 Elongation factor Tu C-terminal domain LA358_03740 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LA358_03745 PF00467 KOW motif LA358_03745 PF02357 Transcription termination factor nusG LA358_03750 PF00298 Ribosomal protein L11, RNA binding domain LA358_03750 PF03946 Ribosomal protein L11, N-terminal domain LA358_03755 PF00687 Ribosomal protein L1p/L10e family LA358_03760 PF00466 Ribosomal protein L10 LA358_03765 PF00542 Ribosomal protein L7/L12 C-terminal domain LA358_03765 PF16320 Ribosomal protein L7/L12 dimerisation domain LA358_03770 PF04563 RNA polymerase beta subunit LA358_03770 PF04561 RNA polymerase Rpb2, domain 2 LA358_03770 PF10385 RNA polymerase beta subunit external 1 domain LA358_03770 PF00562 RNA polymerase Rpb2, domain 6 LA358_03770 PF04560 RNA polymerase Rpb2, domain 7 LA358_03770 PF04565 RNA polymerase Rpb2, domain 3 LA358_03775 PF04997 RNA polymerase Rpb1, domain 1 LA358_03775 PF00623 RNA polymerase Rpb1, domain 2 LA358_03775 PF04983 RNA polymerase Rpb1, domain 3 LA358_03775 PF05000 RNA polymerase Rpb1, domain 4 LA358_03775 PF04998 RNA polymerase Rpb1, domain 5 LA358_03780 PF13309 HTH domain LA358_03780 PF08348 YheO-like PAS domain LA358_03785 PF01042 Endoribonuclease L-PSP LA358_03790 PF02635 DsrE/DsrF-like family LA358_03795 PF02635 DsrE/DsrF-like family LA358_03800 PF04077 DsrH like protein LA358_03805 PF00164 Ribosomal protein S12/S23 LA358_03810 PF00177 Ribosomal protein S7p/S5e LA358_03815 PF03144 Elongation factor Tu domain 2 LA358_03815 PF03764 Elongation factor G, domain IV LA358_03815 PF00009 Elongation factor Tu GTP binding domain LA358_03815 PF14492 Elongation Factor G, domain II LA358_03815 PF00679 Elongation factor G C-terminus LA358_03820 PF03143 Elongation factor Tu C-terminal domain LA358_03820 PF03144 Elongation factor Tu domain 2 LA358_03820 PF00009 Elongation factor Tu GTP binding domain LA358_03860 PF00440 Bacterial regulatory proteins, tetR family LA358_03870 PF07947 YhhN family LA358_03875 PF07690 Major Facilitator Superfamily LA358_03880 PF13533 Biotin-lipoyl like LA358_03885 PF03466 LysR substrate binding domain LA358_03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_03895 PF00375 Sodium:dicarboxylate symporter family LA358_03900 PF10678 Protein of unknown function (DUF2492) LA358_03905 PF01914 MarC family integral membrane protein LA358_03910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_03910 PF03466 LysR substrate binding domain LA358_03915 PF02416 mttA/Hcf106 family LA358_03925 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_03925 PF01464 Transglycosylase SLT domain LA358_03930 PF13091 PLD-like domain LA358_03945 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LA358_03945 PF00326 Prolyl oligopeptidase family LA358_03960 PF00106 short chain dehydrogenase LA358_03965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_03965 PF03466 LysR substrate binding domain LA358_03970 PF02525 Flavodoxin-like fold LA358_03975 PF02254 TrkA-N domain LA358_03975 PF00999 Sodium/hydrogen exchanger family LA358_04000 PF00448 SRP54-type protein, GTPase domain LA358_04000 PF02881 SRP54-type protein, helical bundle domain LA358_04005 PF00005 ABC transporter LA358_04010 PF18075 FtsX extracellular domain LA358_04015 PF00140 Sigma-70 factor, region 1.2 LA358_04015 PF04542 Sigma-70 region 2 LA358_04015 PF04545 Sigma-70, region 4 LA358_04020 PF00484 Carbonic anhydrase LA358_04025 PF00392 Bacterial regulatory proteins, gntR family LA358_04025 PF07702 UTRA domain LA358_04030 PF07670 Nucleoside recognition LA358_04035 PF01979 Amidohydrolase family LA358_04040 PF00491 Arginase family LA358_04045 PF17391 Urocanase N-terminal domain LA358_04045 PF01175 Urocanase Rossmann-like domain LA358_04045 PF17392 Urocanase C-terminal domain LA358_04050 PF00221 Aromatic amino acid lyase LA358_04055 PF01699 Sodium/calcium exchanger protein LA358_04060 PF12792 CSS motif domain associated with EAL LA358_04060 PF00563 EAL domain LA358_04070 PF00563 EAL domain LA358_04070 PF17157 Gammaproteobacterial periplasmic sensor domain LA358_04070 PF00990 Diguanylate cyclase, GGDEF domain LA358_04100 PF00263 Bacterial type II and III secretion system protein LA358_04100 PF03958 Bacterial type II/III secretion system short domain LA358_04115 PF00437 Type II/IV secretion system protein LA358_04115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LA358_04120 PF00482 Type II secretion system (T2SS), protein F LA358_04130 PF07963 Prokaryotic N-terminal methylation motif LA358_04135 PF08334 Type II secretion system (T2SS), protein G LA358_04135 PF07963 Prokaryotic N-terminal methylation motif LA358_04140 PF07963 Prokaryotic N-terminal methylation motif LA358_04140 PF00114 Pilin (bacterial filament) LA358_04170 PF04085 rod shape-determining protein MreC LA358_04175 PF04093 rod shape-determining protein MreD LA358_04180 PF02545 Maf-like protein LA358_04185 PF10150 Ribonuclease E/G family LA358_04185 PF00575 S1 RNA binding domain LA358_04190 PF13502 AsmA-like C-terminal region LA358_04190 PF13116 Protein of unknown function LA358_04195 PF00795 Carbon-nitrogen hydrolase LA358_04200 PF01523 Putative modulator of DNA gyrase LA358_04210 PF01914 MarC family integral membrane protein LA358_04215 PF07690 Major Facilitator Superfamily LA358_04225 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LA358_04255 PF07683 Cobalamin synthesis protein cobW C-terminal domain LA358_04255 PF02492 CobW/HypB/UreG, nucleotide-binding domain LA358_04260 PF07690 Major Facilitator Superfamily LA358_04265 PF00672 HAMP domain LA358_04265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_04275 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LA358_04280 PF02152 Dihydroneopterin aldolase LA358_04285 PF02660 Glycerol-3-phosphate acyltransferase LA358_04310 PF00990 Diguanylate cyclase, GGDEF domain LA358_04315 PF13036 Peptidoglycan-synthase activator LpoB LA358_04325 PF00990 Diguanylate cyclase, GGDEF domain LA358_04335 PF06055 Exopolysaccharide synthesis, ExoD LA358_04345 PF01638 HxlR-like helix-turn-helix LA358_04355 PF00909 Ammonium Transporter Family LA358_04360 PF05433 Glycine zipper 2TM domain LA358_04365 PF00583 Acetyltransferase (GNAT) family LA358_04370 PF11756 Nitrous oxide-stimulated promoter LA358_04375 PF01321 Creatinase/Prolidase N-terminal domain LA358_04375 PF00557 Metallopeptidase family M24 LA358_04380 PF00392 Bacterial regulatory proteins, gntR family LA358_04385 PF01293 Phosphoenolpyruvate carboxykinase LA358_04390 PF01430 Hsp33 protein LA358_04395 PF01479 S4 domain LA358_04405 PF01569 PAP2 superfamily LA358_04410 PF01594 AI-2E family transporter LA358_04420 PF13737 Transposase DDE domain LA358_04430 PF02954 Bacterial regulatory protein, Fis family LA358_04430 PF00989 PAS fold LA358_04430 PF00158 Sigma-54 interaction domain LA358_04435 PF00465 Iron-containing alcohol dehydrogenase LA358_04440 PF03610 PTS system fructose IIA component LA358_04440 PF05524 PEP-utilising enzyme, N-terminal LA358_04440 PF00391 PEP-utilising enzyme, mobile domain LA358_04440 PF00381 PTS HPr component phosphorylation site LA358_04445 PF02734 DAK2 domain LA358_04450 PF02733 Dak1 domain LA358_04455 PF00860 Permease family LA358_04460 PF00313 'Cold-shock' DNA-binding domain LA358_04470 PF16916 Dimerisation domain of Zinc Transporter LA358_04470 PF01545 Cation efflux family LA358_04480 PF00436 Single-strand binding protein family LA358_04485 PF17755 UvrA DNA-binding domain LA358_04485 PF17760 UvrA interaction domain LA358_04485 PF00005 ABC transporter LA358_04490 PF00990 Diguanylate cyclase, GGDEF domain LA358_04495 PF03922 OmpW family LA358_04500 PF00672 HAMP domain LA358_04500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_04515 PF02219 Methylenetetrahydrofolate reductase LA358_04520 PF03594 Benzoate membrane transport protein LA358_04525 PF07883 Cupin domain LA358_04525 PF01381 Helix-turn-helix LA358_04585 PF06965 Na+/H+ antiporter 1 LA358_04585 PF13462 Thioredoxin LA358_04600 PF00202 Aminotransferase class-III LA358_04605 PF00654 Voltage gated chloride channel LA358_04615 PF01521 Iron-sulphur cluster biosynthesis LA358_04620 PF03553 Na+/H+ antiporter family LA358_04660 PF00534 Glycosyl transferases group 1 LA358_04660 PF08323 Starch synthase catalytic domain LA358_04665 PF00483 Nucleotidyl transferase LA358_04670 PF05175 Methyltransferase small domain LA358_04670 PF08468 Methyltransferase small domain N-terminal LA358_04675 PF00701 Dihydrodipicolinate synthetase family LA358_04685 PF01865 Protein of unknown function DUF47 LA358_04690 PF01384 Phosphate transporter family LA358_04695 PF00696 Amino acid kinase family LA358_04695 PF00742 Homoserine dehydrogenase LA358_04695 PF03447 Homoserine dehydrogenase, NAD binding domain LA358_04700 PF01053 Cys/Met metabolism PLP-dependent enzyme LA358_04705 PF01340 Met Apo-repressor, MetJ LA358_04710 PF01588 Putative tRNA binding domain LA358_04715 PF03222 Tryptophan/tyrosine permease family LA358_04720 PF00459 Inositol monophosphatase family LA358_04725 PF00293 NUDIX domain LA358_04730 PF13419 Haloacid dehalogenase-like hydrolase LA358_04745 PF14602 Hexapeptide repeat of succinyl-transferase LA358_04745 PF12464 Maltose acetyltransferase LA358_04750 PF13194 Domain of unknown function (DUF4010) LA358_04765 PF00528 Binding-protein-dependent transport system inner membrane component LA358_04770 PF00528 Binding-protein-dependent transport system inner membrane component LA358_04775 PF00005 ABC transporter LA358_04775 PF12857 TOBE-like domain LA358_04780 PF03466 LysR substrate binding domain LA358_04780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_04785 PF18416 N-acetylglucosamine binding protein domain 2 LA358_04785 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LA358_04790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_04790 PF00672 HAMP domain LA358_04790 PF12729 Four helix bundle sensory module for signal transduction LA358_04820 PF14883 Hypothetical glycosyl hydrolase family 13 LA358_04820 PF01522 Polysaccharide deacetylase LA358_04825 PF00535 Glycosyl transferase family 2 LA358_04840 PF14883 Hypothetical glycosyl hydrolase family 13 LA358_04840 PF01522 Polysaccharide deacetylase LA358_04845 PF00535 Glycosyl transferase family 2 LA358_04895 PF02321 Outer membrane efflux protein LA358_04900 PF01594 AI-2E family transporter LA358_04915 PF11230 Protein of unknown function (DUF3029) LA358_04920 PF04055 Radical SAM superfamily LA358_04930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_04930 PF03466 LysR substrate binding domain LA358_04935 PF00155 Aminotransferase class I and II LA358_04940 PF02583 Metal-sensitive transcriptional repressor LA358_04950 PF13416 Bacterial extracellular solute-binding protein LA358_04960 PF00005 ABC transporter LA358_04960 PF08402 TOBE domain LA358_04965 PF04261 Dyp-type peroxidase family LA358_04970 PF01316 Arginine repressor, DNA binding domain LA358_04970 PF02863 Arginine repressor, C-terminal domain LA358_04975 PF00005 ABC transporter LA358_04980 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_04985 PF00528 Binding-protein-dependent transport system inner membrane component LA358_04990 PF00528 Binding-protein-dependent transport system inner membrane component LA358_04995 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LA358_04995 PF00056 lactate/malate dehydrogenase, NAD binding domain LA358_05000 PF08238 Sel1 repeat LA358_05005 PF00970 Oxidoreductase FAD-binding domain LA358_05005 PF00042 Globin LA358_05005 PF00175 Oxidoreductase NAD-binding domain LA358_05010 PF02082 Transcriptional regulator LA358_05015 PF00571 CBS domain LA358_05015 PF01595 Cyclin M transmembrane N-terminal domain LA358_05015 PF03471 Transporter associated domain LA358_05020 PF01578 Cytochrome C assembly protein LA358_05025 PF02881 SRP54-type protein, helical bundle domain LA358_05025 PF02978 Signal peptide binding domain LA358_05025 PF00448 SRP54-type protein, GTPase domain LA358_05030 PF00886 Ribosomal protein S16 LA358_05035 PF05239 PRC-barrel domain LA358_05035 PF01782 RimM N-terminal domain LA358_05040 PF01746 tRNA (Guanine-1)-methyltransferase LA358_05045 PF01245 Ribosomal protein L19 LA358_05055 PF02976 DNA mismatch repair enzyme MutH LA358_05060 PF00293 NUDIX domain LA358_05065 PF02896 PEP-utilising enzyme, TIM barrel domain LA358_05065 PF00391 PEP-utilising enzyme, mobile domain LA358_05065 PF05524 PEP-utilising enzyme, N-terminal LA358_05065 PF01590 GAF domain LA358_05070 PF01790 Prolipoprotein diacylglyceryl transferase LA358_05075 PF00303 Thymidylate synthase LA358_05085 PF17967 Pullulanase N2 domain LA358_05085 PF18494 Pullulanase Ins domain LA358_05085 PF03714 Bacterial pullanase-associated domain LA358_05085 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA358_05085 PF11852 Domain of unknown function (DUF3372) LA358_05090 PF00403 Heavy-metal-associated domain LA358_05095 PF08534 Redoxin LA358_05100 PF00270 DEAD/DEAH box helicase LA358_05100 PF00271 Helicase conserved C-terminal domain LA358_05115 PF06062 Uncharacterised protein family (UPF0231) LA358_05120 PF05651 Putative sugar diacid recognition LA358_05120 PF17853 GGDEF-like domain LA358_05120 PF13556 PucR C-terminal helix-turn-helix domain LA358_05125 PF02447 GntP family permease LA358_05130 PF02595 Glycerate kinase family LA358_05140 PF00255 Glutathione peroxidase LA358_05145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_05145 PF03466 LysR substrate binding domain LA358_05150 PF07670 Nucleoside recognition LA358_05150 PF07662 Na+ dependent nucleoside transporter C-terminus LA358_05150 PF01773 Na+ dependent nucleoside transporter N-terminus LA358_05160 PF02594 Uncharacterised ACR, YggU family COG1872 LA358_05165 PF02325 YGGT family LA358_05170 PF03807 NADP oxidoreductase coenzyme F420-dependent LA358_05170 PF14748 Pyrroline-5-carboxylate reductase dimerisation LA358_05175 PF01168 Alanine racemase, N-terminal domain LA358_05180 PF00437 Type II/IV secretion system protein LA358_05185 PF00437 Type II/IV secretion system protein LA358_05190 PF03883 Peroxide stress protein YaaA LA358_05200 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LA358_05200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LA358_05205 PF00472 RF-1 domain LA358_05210 PF00543 Nitrogen regulatory protein P-II LA358_05225 PF02028 BCCT, betaine/carnitine/choline family transporter LA358_05230 PF12627 Probable RNA and SrmB- binding site of polymerase A LA358_05230 PF01743 Poly A polymerase head domain LA358_05230 PF01966 HD domain LA358_05235 PF10576 Iron-sulfur binding domain of endonuclease III LA358_05235 PF00633 Helix-hairpin-helix motif LA358_05235 PF00730 HhH-GPD superfamily base excision DNA repair protein LA358_05235 PF14815 NUDIX domain LA358_05240 PF04362 Bacterial Fe(2+) trafficking LA358_05245 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LA358_05245 PF01464 Transglycosylase SLT domain LA358_05250 PF04076 Bacterial OB fold (BOF) protein LA358_05255 PF00657 GDSL-like Lipase/Acylhydrolase LA358_05260 PF00691 OmpA family LA358_05260 PF01389 OmpA-like transmembrane domain LA358_05265 PF00990 Diguanylate cyclase, GGDEF domain LA358_05270 PF08461 Ribonuclease R winged-helix domain LA358_05270 PF17876 Cold shock domain LA358_05270 PF08206 Ribonuclease B OB domain LA358_05270 PF00773 RNB domain LA358_05270 PF00575 S1 RNA binding domain LA358_05275 PF00271 Helicase conserved C-terminal domain LA358_05280 PF14130 Domain of unknown function (DUF4297) LA358_05280 PF08878 Domain of unknown function (DUF1837) LA358_05285 PF08032 RNA 2'-O ribose methyltransferase substrate binding LA358_05285 PF00588 SpoU rRNA Methylase family LA358_05295 PF13673 Acetyltransferase (GNAT) domain LA358_05300 PF00270 DEAD/DEAH box helicase LA358_05300 PF00271 Helicase conserved C-terminal domain LA358_05305 PF05175 Methyltransferase small domain LA358_05310 PF05525 Branched-chain amino acid transport protein LA358_05325 PF01475 Ferric uptake regulator family LA358_05330 PF01207 Dihydrouridine synthase (Dus) LA358_05335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_05335 PF08447 PAS fold LA358_05345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_05355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LA358_05360 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LA358_05365 PF03480 Bacterial extracellular solute-binding protein, family 7 LA358_05370 PF02954 Bacterial regulatory protein, Fis family LA358_05370 PF00072 Response regulator receiver domain LA358_05370 PF00158 Sigma-54 interaction domain LA358_05375 PF00512 His Kinase A (phospho-acceptor) domain LA358_05375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_05375 PF02743 Cache domain LA358_05380 PF10952 Protein of unknown function (DUF2753) LA358_05385 PF00378 Enoyl-CoA hydratase/isomerase LA358_05400 PF00106 short chain dehydrogenase LA358_05405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA358_05405 PF04073 Aminoacyl-tRNA editing domain LA358_05405 PF03129 Anticodon binding domain LA358_05410 PF01938 TRAM domain LA358_05410 PF05958 tRNA (Uracil-5-)-methyltransferase LA358_05415 PF03886 ABC-type transport auxiliary lipoprotein component LA358_05420 PF02470 MlaD protein LA358_05425 PF04403 Paraquat-inducible protein A LA358_05430 PF17209 Hfq protein LA358_05435 PF13419 Haloacid dehalogenase-like hydrolase LA358_05445 PF00360 Phytochrome region LA358_05445 PF00990 Diguanylate cyclase, GGDEF domain LA358_05445 PF01590 GAF domain LA358_05445 PF00563 EAL domain LA358_05450 PF00773 RNB domain LA358_05450 PF08206 Ribonuclease B OB domain LA358_05450 PF17876 Cold shock domain LA358_05455 PF03466 LysR substrate binding domain LA358_05455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_05460 PF00765 Autoinducer synthase LA358_05465 PF03472 Autoinducer binding domain LA358_05465 PF00196 Bacterial regulatory proteins, luxR family LA358_05470 PF01810 LysE type translocator LA358_05475 PF02872 5'-nucleotidase, C-terminal domain LA358_05475 PF00149 Calcineurin-like phosphoesterase LA358_05480 PF12729 Four helix bundle sensory module for signal transduction LA358_05480 PF00672 HAMP domain LA358_05480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_05485 PF01330 RuvA N terminal domain LA358_05485 PF07499 RuvA, C-terminal domain LA358_05490 PF05491 RuvB C-terminal winged helix domain LA358_05490 PF05496 Holliday junction DNA helicase RuvB P-loop domain LA358_05490 PF17864 RuvB AAA lid domain LA358_05495 PF01654 Cytochrome bd terminal oxidase subunit I LA358_05500 PF02322 Cytochrome bd terminal oxidase subunit II LA358_05505 PF08173 Membrane bound YbgT-like protein LA358_05510 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LA358_05515 PF03061 Thioesterase superfamily LA358_05520 PF01618 MotA/TolQ/ExbB proton channel family LA358_05525 PF02472 Biopolymer transport protein ExbD/TolR LA358_05535 PF07676 WD40-like Beta Propeller Repeat LA358_05535 PF04052 TolB amino-terminal domain LA358_05540 PF00691 OmpA family LA358_05545 PF13174 Tetratricopeptide repeat LA358_05545 PF16331 TolA binding protein trimerisation LA358_05610 PF00209 Sodium:neurotransmitter symporter family LA358_05620 PF00209 Sodium:neurotransmitter symporter family LA358_05640 PF07690 Major Facilitator Superfamily LA358_05650 PF01037 Lrp/AsnC ligand binding domain LA358_05670 PF00140 Sigma-70 factor, region 1.2 LA358_05670 PF04542 Sigma-70 region 2 LA358_05670 PF04539 Sigma-70 region 3 LA358_05670 PF04545 Sigma-70, region 4 LA358_05670 PF03979 Sigma-70 factor, region 1.1 LA358_05670 PF04546 Sigma-70, non-essential region LA358_05675 PF01807 CHC2 zinc finger LA358_05675 PF08275 DNA primase catalytic core, N-terminal domain LA358_05675 PF08278 DNA primase DnaG DnaB-binding LA358_05675 PF10410 DnaB-helicase binding domain of primase LA358_05680 PF09424 Yqey-like protein LA358_05685 PF01165 Ribosomal protein S21 LA358_05690 PF00814 Glycoprotease family LA358_05695 PF03605 Anaerobic c4-dicarboxylate membrane transporter LA358_05700 PF10415 Fumarase C C-terminus LA358_05700 PF00206 Lyase LA358_05705 PF04186 FxsA cytoplasmic membrane protein LA358_05710 PF01554 MatE LA358_05715 PF00166 Chaperonin 10 Kd subunit LA358_05720 PF00118 TCP-1/cpn60 chaperonin family LA358_05730 PF03707 Bacterial signalling protein N terminal repeat LA358_05730 PF00563 EAL domain LA358_05730 PF00990 Diguanylate cyclase, GGDEF domain LA358_05760 PF00317 Ribonucleotide reductase, all-alpha domain LA358_05760 PF08343 Ribonucleotide reductase N-terminal LA358_05760 PF02867 Ribonucleotide reductase, barrel domain LA358_05770 PF02562 PhoH-like protein LA358_05770 PF13638 PIN domain LA358_05775 PF00005 ABC transporter LA358_05780 PF00528 Binding-protein-dependent transport system inner membrane component LA358_05800 PF00694 Aconitase C-terminal domain LA358_05805 PF00330 Aconitase family (aconitate hydratase) LA358_05810 PF00180 Isocitrate/isopropylmalate dehydrogenase LA358_05815 PF08502 LeuA allosteric (dimerisation) domain LA358_05815 PF00682 HMGL-like LA358_05825 PF01569 PAP2 superfamily LA358_05840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LA358_05840 PF00205 Thiamine pyrophosphate enzyme, central domain LA358_05840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA358_05845 PF10369 Small subunit of acetolactate synthase LA358_05850 PF01810 LysE type translocator LA358_05855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_05855 PF03466 LysR substrate binding domain LA358_05860 PF01546 Peptidase family M20/M25/M40 LA358_05880 PF02954 Bacterial regulatory protein, Fis family LA358_05885 PF01207 Dihydrouridine synthase (Dus) LA358_05895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_05925 PF00072 Response regulator receiver domain LA358_05930 PF00854 POT family LA358_05935 PF00483 Nucleotidyl transferase LA358_05945 PF07085 DRTGG domain LA358_05945 PF01515 Phosphate acetyl/butaryl transferase LA358_05950 PF00871 Acetokinase family LA358_05955 PF04217 Protein of unknown function, DUF412 LA358_05960 PF03887 YfbU domain LA358_05965 PF00578 AhpC/TSA family LA358_05970 PF01842 ACT domain LA358_05975 PF00701 Dihydrodipicolinate synthetase family LA358_05980 PF06804 NlpB/DapX lipoprotein LA358_05985 PF01259 SAICAR synthetase LA358_05990 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LA358_06010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_06010 PF00512 His Kinase A (phospho-acceptor) domain LA358_06010 PF18415 Histidine kinase receptor ArcB trans-membrane domain LA358_06010 PF01627 Hpt domain LA358_06010 PF00989 PAS fold LA358_06010 PF00072 Response regulator receiver domain LA358_06015 PF01966 HD domain LA358_06015 PF13286 Phosphohydrolase-associated domain LA358_06025 PF00072 Response regulator receiver domain LA358_06025 PF09456 RcsC Alpha-Beta-Loop (ABL) LA358_06025 PF00512 His Kinase A (phospho-acceptor) domain LA358_06025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_06030 PF00990 Diguanylate cyclase, GGDEF domain LA358_06030 PF03707 Bacterial signalling protein N terminal repeat LA358_06030 PF00563 EAL domain LA358_06035 PF02357 Transcription termination factor nusG LA358_06040 PF03180 NLPA lipoprotein LA358_06045 PF00528 Binding-protein-dependent transport system inner membrane component LA358_06070 PF00480 ROK family LA358_06075 PF08331 Domain of unknown function (DUF1730) LA358_06080 PF01256 Carbohydrate kinase LA358_06080 PF03853 YjeF-related protein N-terminus LA358_06085 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LA358_06090 PF01520 N-acetylmuramoyl-L-alanine amidase LA358_06095 PF01119 DNA mismatch repair protein, C-terminal domain LA358_06095 PF08676 MutL C terminal dimerisation domain LA358_06105 PF17209 Hfq protein LA358_06110 PF16360 GTP-binding GTPase Middle Region LA358_06110 PF13167 GTP-binding GTPase N-terminal LA358_06110 PF01926 50S ribosome-binding GTPase LA358_06115 PF01145 SPFH domain / Band 7 family LA358_06115 PF12221 Bacterial membrane protein N terminal LA358_06120 PF01145 SPFH domain / Band 7 family LA358_06125 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LA358_06130 PF00348 Polyprenyl synthetase LA358_06135 PF00829 Ribosomal prokaryotic L21 protein LA358_06140 PF01016 Ribosomal L27 protein LA358_06145 PF01018 GTP1/OBG LA358_06145 PF01926 50S ribosome-binding GTPase LA358_06150 PF07670 Nucleoside recognition LA358_06155 PF00501 AMP-binding enzyme LA358_06155 PF13193 AMP-binding enzyme C-terminal domain LA358_06165 PF00296 Luciferase-like monooxygenase LA358_06180 PF00149 Calcineurin-like phosphoesterase LA358_06185 PF04379 ApaG domain LA358_06190 PF00398 Ribosomal RNA adenine dimethylase LA358_06195 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LA358_06200 PF00639 PPIC-type PPIASE domain LA358_06200 PF09312 SurA N-terminal domain LA358_06205 PF04453 LPS transport system D LA358_06205 PF03968 OstA-like protein LA358_06210 PF01636 Phosphotransferase enzyme family LA358_06215 PF00483 Nucleotidyl transferase LA358_06220 PF00226 DnaJ domain LA358_06220 PF05099 Tellurite resistance protein TerB LA358_06225 PF07687 Peptidase dimerisation domain LA358_06225 PF01546 Peptidase family M20/M25/M40 LA358_06230 PF00156 Phosphoribosyl transferase domain LA358_06235 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LA358_06240 PF07417 Sigma factor-binding transcriptional regulator Crl LA358_06245 PF00696 Amino acid kinase family LA358_06245 PF01472 PUA domain LA358_06250 PF00171 Aldehyde dehydrogenase family LA358_06260 PF09905 DNA-binding protein VF530 LA358_06265 PF02666 Phosphatidylserine decarboxylase LA358_06270 PF03193 RsgA GTPase LA358_06275 PF00929 Exonuclease LA358_06315 PF00313 'Cold-shock' DNA-binding domain LA358_06325 PF00672 HAMP domain LA358_06325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_06330 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA358_06335 PF02743 Cache domain LA358_06335 PF00672 HAMP domain LA358_06335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_06340 PF00027 Cyclic nucleotide-binding domain LA358_06340 PF00520 Ion transport protein LA358_06345 PF08239 Bacterial SH3 domain LA358_06350 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LA358_06350 PF14850 DNA-binding domain of Proline dehydrogenase LA358_06350 PF01619 Proline dehydrogenase LA358_06350 PF00171 Aldehyde dehydrogenase family LA358_06355 PF09297 NADH pyrophosphatase zinc ribbon domain LA358_06355 PF00293 NUDIX domain LA358_06360 PF01208 Uroporphyrinogen decarboxylase (URO-D) LA358_06365 PF00480 ROK family LA358_06370 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LA358_06370 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LA358_06375 PF00162 Phosphoglycerate kinase LA358_06380 PF01116 Fructose-bisphosphate aldolase class-II LA358_06385 PF01266 FAD dependent oxidoreductase LA358_06395 PF02683 Cytochrome C biogenesis protein transmembrane region LA358_06395 PF11412 Disulphide bond corrector protein DsbC LA358_06400 PF03091 CutA1 divalent ion tolerance protein LA358_06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_06415 PF03466 LysR substrate binding domain LA358_06420 PF01571 Aminomethyltransferase folate-binding domain LA358_06425 PF03937 Flavinator of succinate dehydrogenase LA358_06435 PF00890 FAD binding domain LA358_06435 PF02910 Fumarate reductase flavoprotein C-term LA358_06440 PF04542 Sigma-70 region 2 LA358_06440 PF08281 Sigma-70, region 4 LA358_06445 PF03873 Anti sigma-E protein RseA, C-terminal domain LA358_06445 PF03872 Anti sigma-E protein RseA, N-terminal domain LA358_06450 PF03888 MucB/RseB N-terminal domain LA358_06450 PF17188 MucB/RseB C-terminal domain LA358_06460 PF00679 Elongation factor G C-terminus LA358_06460 PF00009 Elongation factor Tu GTP binding domain LA358_06460 PF03144 Elongation factor Tu domain 2 LA358_06460 PF06421 GTP-binding protein LepA C-terminus LA358_06465 PF10502 Signal peptidase, peptidase S26 LA358_06470 PF00035 Double-stranded RNA binding motif LA358_06470 PF14622 Ribonuclease-III-like LA358_06475 PF07650 KH domain LA358_06475 PF01926 50S ribosome-binding GTPase LA358_06480 PF11967 Recombination protein O N terminal LA358_06480 PF02565 Recombination protein O C terminal LA358_06485 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LA358_06495 PF00459 Inositol monophosphatase family LA358_06500 PF03795 YCII-related domain LA358_06505 PF04279 Intracellular septation protein A LA358_06510 PF00282 Pyridoxal-dependent decarboxylase conserved domain LA358_06515 PF03006 Haemolysin-III related LA358_06520 PF06826 Predicted Permease Membrane Region LA358_06520 PF02080 TrkA-C domain LA358_06535 PF00990 Diguanylate cyclase, GGDEF domain LA358_06535 PF03707 Bacterial signalling protein N terminal repeat LA358_06535 PF00563 EAL domain LA358_06540 PF06877 Regulator of ribonuclease activity B LA358_06560 PF00561 alpha/beta hydrolase fold LA358_06565 PF03150 Di-haem cytochrome c peroxidase LA358_06565 PF00034 Cytochrome c LA358_06570 PF00194 Eukaryotic-type carbonic anhydrase LA358_06575 PF00109 Beta-ketoacyl synthase, N-terminal domain LA358_06575 PF02801 Beta-ketoacyl synthase, C-terminal domain LA358_06590 PF02801 Beta-ketoacyl synthase, C-terminal domain LA358_06590 PF00109 Beta-ketoacyl synthase, N-terminal domain LA358_06615 PF00221 Aromatic amino acid lyase LA358_06625 PF07977 FabA-like domain LA358_06630 PF13193 AMP-binding enzyme C-terminal domain LA358_06630 PF00501 AMP-binding enzyme LA358_06640 PF00550 Phosphopantetheine attachment site LA358_06645 PF00550 Phosphopantetheine attachment site LA358_06675 PF04227 Indigoidine synthase A like protein LA358_06680 PF00294 pfkB family carbohydrate kinase LA358_06695 PF00582 Universal stress protein family LA358_06705 PF00267 Gram-negative porin LA358_06710 PF13847 Methyltransferase domain LA358_06715 PF13545 Crp-like helix-turn-helix domain LA358_06715 PF00027 Cyclic nucleotide-binding domain LA358_06720 PF02566 OsmC-like protein LA358_06735 PF00485 Phosphoribulokinase / Uridine kinase family LA358_06740 PF06794 Uncharacterised protein family (UPF0270) LA358_06745 PF00561 alpha/beta hydrolase fold LA358_06750 PF00072 Response regulator receiver domain LA358_06750 PF01584 CheW-like domain LA358_06760 PF09526 Probable metal-binding protein (DUF2387) LA358_06765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA358_06770 PF04102 SlyX LA358_06780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA358_06780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LA358_06785 PF02954 Bacterial regulatory protein, Fis family LA358_06785 PF00072 Response regulator receiver domain LA358_06785 PF00158 Sigma-54 interaction domain LA358_06805 PF02872 5'-nucleotidase, C-terminal domain LA358_06805 PF00149 Calcineurin-like phosphoesterase LA358_06815 PF03796 DnaB-like helicase C terminal domain LA358_06815 PF00772 DnaB-like helicase N terminal domain LA358_06820 PF00842 Alanine racemase, C-terminal domain LA358_06820 PF01168 Alanine racemase, N-terminal domain LA358_06825 PF01894 Uncharacterised protein family UPF0047 LA358_06830 PF03575 Peptidase family S51 LA358_06840 PF00005 ABC transporter LA358_06845 PF01032 FecCD transport family LA358_06855 PF06228 Haem utilisation ChuX/HutX LA358_06860 PF01243 Pyridoxamine 5'-phosphate oxidase LA358_06880 PF00593 TonB dependent receptor LA358_06880 PF07715 TonB-dependent Receptor Plug Domain LA358_06885 PF12832 MFS_1 like family LA358_06890 PF00512 His Kinase A (phospho-acceptor) domain LA358_06890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_06895 PF00704 Glycosyl hydrolases family 18 LA358_06895 PF08329 Chitinase A, N-terminal domain LA358_06930 PF00704 Glycosyl hydrolases family 18 LA358_06930 PF06483 Chitinase C LA358_06935 PF00072 Response regulator receiver domain LA358_06935 PF01584 CheW-like domain LA358_06940 PF13472 GDSL-like Lipase/Acylhydrolase family LA358_06945 PF00005 ABC transporter LA358_06955 PF08338 Domain of unknown function (DUF1731) LA358_06955 PF01370 NAD dependent epimerase/dehydratase family LA358_06960 PF00155 Aminotransferase class I and II LA358_06965 PF02390 Putative methyltransferase LA358_06970 PF04320 Protein with unknown function (DUF469) LA358_06975 PF04960 Glutaminase LA358_06980 PF00581 Rhodanese-like domain LA358_06985 PF05922 Peptidase inhibitor I9 LA358_06985 PF00082 Subtilase family LA358_06990 PF06004 Bacterial protein of unknown function (DUF903) LA358_07000 PF00994 Probable molybdopterin binding domain LA358_07010 PF06738 Putative threonine/serine exporter LA358_07015 PF12821 Threonine/Serine exporter, ThrE LA358_07020 PF00186 Dihydrofolate reductase LA358_07025 PF00571 CBS domain LA358_07025 PF00005 ABC transporter LA358_07030 PF00528 Binding-protein-dependent transport system inner membrane component LA358_07035 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LA358_07040 PF01507 Phosphoadenosine phosphosulfate reductase family LA358_07045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LA358_07045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LA358_07050 PF00667 FAD binding domain LA358_07050 PF00258 Flavodoxin LA358_07050 PF00175 Oxidoreductase NAD-binding domain LA358_07055 PF02567 Phenazine biosynthesis-like protein LA358_07060 PF01336 OB-fold nucleic acid binding domain LA358_07060 PF00152 tRNA synthetases class II (D, K and N) LA358_07070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_07070 PF02743 Cache domain LA358_07070 PF00672 HAMP domain LA358_07075 PF03616 Sodium/glutamate symporter LA358_07080 PF00710 Asparaginase, N-terminal LA358_07080 PF17763 Glutaminase/Asparaginase C-terminal domain LA358_07085 PF07023 Protein of unknown function (DUF1315) LA358_07090 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LA358_07090 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LA358_07105 PF04055 Radical SAM superfamily LA358_07105 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LA358_07110 PF03099 Biotin/lipoate A/B protein ligase family LA358_07115 PF04359 Protein of unknown function (DUF493) LA358_07120 PF00768 D-alanyl-D-alanine carboxypeptidase LA358_07120 PF07943 Penicillin-binding protein 5, C-terminal domain LA358_07125 PF03330 Lytic transglycolase LA358_07125 PF05036 Sporulation related domain LA358_07130 PF13406 Transglycosylase SLT domain LA358_07140 PF03717 Penicillin-binding Protein dimerisation domain LA358_07140 PF00905 Penicillin binding protein transpeptidase domain LA358_07145 PF02590 Predicted SPOUT methyltransferase LA358_07155 PF01467 Cytidylyltransferase-like LA358_07170 PF13603 Leucyl-tRNA synthetase, Domain 2 LA358_07170 PF08264 Anticodon-binding domain of tRNA LA358_07170 PF00133 tRNA synthetases class I (I, L, M and V) LA358_07175 PF07295 Zinc-ribbon containing domain LA358_07185 PF01523 Putative modulator of DNA gyrase LA358_07190 PF00258 Flavodoxin LA358_07195 PF02899 Phage integrase, N-terminal SAM-like domain LA358_07195 PF00589 Phage integrase family LA358_07200 PF00990 Diguanylate cyclase, GGDEF domain LA358_07205 PF01741 Large-conductance mechanosensitive channel, MscL LA358_07215 PF17768 RecJ OB domain LA358_07215 PF01368 DHH family LA358_07215 PF02272 DHHA1 domain LA358_07220 PF13411 MerR HTH family regulatory protein LA358_07230 PF00795 Carbon-nitrogen hydrolase LA358_07235 PF00571 CBS domain LA358_07235 PF03471 Transporter associated domain LA358_07240 PF02130 Uncharacterized protein family UPF0054 LA358_07245 PF02562 PhoH-like protein LA358_07250 PF04055 Radical SAM superfamily LA358_07250 PF01938 TRAM domain LA358_07250 PF00919 Uncharacterized protein family UPF0004 LA358_07255 PF01494 FAD binding domain LA358_07265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_07265 PF03466 LysR substrate binding domain LA358_07275 PF13419 Haloacid dehalogenase-like hydrolase LA358_07280 PF00990 Diguanylate cyclase, GGDEF domain LA358_07285 PF00072 Response regulator receiver domain LA358_07285 PF00990 Diguanylate cyclase, GGDEF domain LA358_07295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA358_07295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA358_07305 PF01132 Elongation factor P (EF-P) OB domain LA358_07305 PF08207 Elongation factor P (EF-P) KOW-like domain LA358_07305 PF09285 Elongation factor P, C-terminal LA358_07315 PF00478 IMP dehydrogenase / GMP reductase domain LA358_07320 PF18030 RimK PreATP-grasp domain LA358_07320 PF08443 RimK-like ATP-grasp domain LA358_07325 PF00512 His Kinase A (phospho-acceptor) domain LA358_07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_07325 PF08521 Two-component sensor kinase N-terminal LA358_07330 PF00072 Response regulator receiver domain LA358_07330 PF00486 Transcriptional regulatory protein, C terminal LA358_07340 PF00106 short chain dehydrogenase LA358_07350 PF00501 AMP-binding enzyme LA358_07365 PF06224 Winged helix DNA-binding domain LA358_07375 PF07687 Peptidase dimerisation domain LA358_07375 PF01546 Peptidase family M20/M25/M40 LA358_07380 PF07670 Nucleoside recognition LA358_07385 PF07670 Nucleoside recognition LA358_07395 PF02313 Fumarate reductase subunit D LA358_07400 PF02300 Fumarate reductase subunit C LA358_07405 PF13085 2Fe-2S iron-sulfur cluster binding domain LA358_07405 PF13183 4Fe-4S dicluster domain LA358_07410 PF02910 Fumarate reductase flavoprotein C-term LA358_07410 PF00890 FAD binding domain LA358_07415 PF00672 HAMP domain LA358_07415 PF02743 Cache domain LA358_07415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_07420 PF03009 Glycerophosphoryl diester phosphodiesterase family LA358_07425 PF00924 Mechanosensitive ion channel LA358_07425 PF12795 Mechanosensitive ion channel porin domain LA358_07425 PF12794 Mechanosensitive ion channel inner membrane domain 1 LA358_07435 PF01476 LysM domain LA358_07435 PF08525 Opacity-associated protein A N-terminal motif LA358_07435 PF01551 Peptidase family M23 LA358_07445 PF03466 LysR substrate binding domain LA358_07445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_07460 PF00672 HAMP domain LA358_07460 PF02743 Cache domain LA358_07460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_07465 PF03466 LysR substrate binding domain LA358_07470 PF17092 Penicillin-binding protein OB-like domain LA358_07470 PF00912 Transglycosylase LA358_07470 PF00905 Penicillin binding protein transpeptidase domain LA358_07475 PF11104 Type IV pilus assembly protein PilM; LA358_07495 PF07660 Secretin and TonB N terminus short domain LA358_07495 PF03958 Bacterial type II/III secretion system short domain LA358_07495 PF00263 Bacterial type II and III secretion system protein LA358_07495 PF11741 AMIN domain LA358_07500 PF01202 Shikimate kinase LA358_07505 PF01761 3-dehydroquinate synthase LA358_07515 PF02086 D12 class N6 adenine-specific DNA methyltransferase LA358_07520 PF00834 Ribulose-phosphate 3 epimerase family LA358_07525 PF13419 Haloacid dehalogenase-like hydrolase LA358_07530 PF00579 tRNA synthetases class I (W and Y) LA358_07540 PF00117 Glutamine amidotransferase class-I LA358_07545 PF00202 Aminotransferase class-III LA358_07550 PF04958 Arginine N-succinyltransferase beta subunit LA358_07555 PF00171 Aldehyde dehydrogenase family LA358_07570 PF13419 Haloacid dehalogenase-like hydrolase LA358_07575 PF07690 Major Facilitator Superfamily LA358_07580 PF07690 Major Facilitator Superfamily LA358_07585 PF00005 ABC transporter LA358_07585 PF12848 ABC transporter LA358_07595 PF00012 Hsp70 protein LA358_07610 PF07859 alpha/beta hydrolase fold LA358_07615 PF04266 ASCH domain LA358_07625 PF01048 Phosphorylase superfamily LA358_07630 PF04973 Nicotinamide mononucleotide transporter LA358_07635 PF03600 Citrate transporter LA358_07635 PF02080 TrkA-C domain LA358_07680 PF01926 50S ribosome-binding GTPase LA358_07680 PF06071 Protein of unknown function (DUF933) LA358_07685 PF01195 Peptidyl-tRNA hydrolase LA358_07690 PF02872 5'-nucleotidase, C-terminal domain LA358_07690 PF00149 Calcineurin-like phosphoesterase LA358_07695 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LA358_07695 PF14572 Phosphoribosyl synthetase-associated domain LA358_07705 PF08544 GHMP kinases C terminal LA358_07705 PF00288 GHMP kinases N terminal domain LA358_07710 PF03550 Outer membrane lipoprotein LolB LA358_07715 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LA358_07715 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LA358_07715 PF01488 Shikimate / quinate 5-dehydrogenase LA358_07720 PF03462 PCRF domain LA358_07720 PF00472 RF-1 domain LA358_07725 PF13847 Methyltransferase domain LA358_07725 PF17827 PrmC N-terminal domain LA358_07735 PF13369 Transglutaminase-like superfamily LA358_07740 PF00793 DAHP synthetase I family LA358_07745 PF01228 Glycine radical LA358_07750 PF03167 Uracil DNA glycosylase superfamily LA358_07760 PF01204 Trehalase LA358_07770 PF01161 Phosphatidylethanolamine-binding protein LA358_07775 PF00709 Adenylosuccinate synthetase LA358_07790 PF00155 Aminotransferase class I and II LA358_07795 PF07690 Major Facilitator Superfamily LA358_07800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_07800 PF03466 LysR substrate binding domain LA358_07805 PF00106 short chain dehydrogenase LA358_07810 PF01343 Peptidase family S49 LA358_07810 PF08496 Peptidase family S49 N-terminal LA358_07815 PF07690 Major Facilitator Superfamily LA358_07820 PF00990 Diguanylate cyclase, GGDEF domain LA358_07825 PF02635 DsrE/DsrF-like family LA358_07840 PF12838 4Fe-4S dicluster domain LA358_07845 PF01136 Peptidase family U32 LA358_07845 PF16325 Peptidase family U32 C-terminal domain LA358_07870 PF04996 Succinylarginine dihydrolase LA358_07875 PF01751 Toprim domain LA358_07875 PF01396 Topoisomerase DNA binding C4 zinc finger LA358_07875 PF01131 DNA topoisomerase LA358_07875 PF08272 Topoisomerase I zinc-ribbon-like LA358_07890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_07890 PF08447 PAS fold LA358_07895 PF00728 Glycosyl hydrolase family 20, catalytic domain LA358_07895 PF02838 Glycosyl hydrolase family 20, domain 2 LA358_07900 PF01869 BadF/BadG/BcrA/BcrD ATPase family LA358_07910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA358_07910 PF00005 ABC transporter LA358_07915 PF00005 ABC transporter LA358_07915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA358_07920 PF12911 N-terminal TM domain of oligopeptide transport permease C LA358_07920 PF00528 Binding-protein-dependent transport system inner membrane component LA358_07925 PF00528 Binding-protein-dependent transport system inner membrane component LA358_07930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_07935 PF00512 His Kinase A (phospho-acceptor) domain LA358_07935 PF00072 Response regulator receiver domain LA358_07935 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_07935 PF01627 Hpt domain LA358_07955 PF10725 Protein of unknown function (DUF2517) LA358_07975 PF05114 Protein of unknown function (DUF692) LA358_08000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_08000 PF08447 PAS fold LA358_08000 PF13426 PAS domain LA358_08010 PF04632 Fusaric acid resistance protein family LA358_08015 PF00994 Probable molybdopterin binding domain LA358_08015 PF03454 MoeA C-terminal region (domain IV) LA358_08015 PF03453 MoeA N-terminal region (domain I and II) LA358_08020 PF12804 MobA-like NTP transferase domain LA358_08025 PF00005 ABC transporter LA358_08030 PF00528 Binding-protein-dependent transport system inner membrane component LA358_08035 PF12849 PBP superfamily domain LA358_08040 PF00158 Sigma-54 interaction domain LA358_08040 PF00072 Response regulator receiver domain LA358_08040 PF02954 Bacterial regulatory protein, Fis family LA358_08045 PF00989 PAS fold LA358_08045 PF00512 His Kinase A (phospho-acceptor) domain LA358_08045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_08050 PF12728 Helix-turn-helix domain LA358_08050 PF12727 PBP superfamily domain LA358_08055 PF02634 FdhD/NarQ family LA358_08090 PF12838 4Fe-4S dicluster domain LA358_08090 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA358_08090 PF01568 Molydopterin dinucleotide binding domain LA358_08090 PF00384 Molybdopterin oxidoreductase LA358_08090 PF00384 Molybdopterin oxidoreductase LA358_08090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA358_08090 PF12838 4Fe-4S dicluster domain LA358_08090 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA358_08090 PF01568 Molydopterin dinucleotide binding domain LA358_08090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA358_08095 PF13247 4Fe-4S dicluster domain LA358_08105 PF00390 Malic enzyme, N-terminal domain LA358_08105 PF03949 Malic enzyme, NAD binding domain LA358_08120 PF00860 Permease family LA358_08135 PF02685 Glucokinase LA358_08140 PF01418 Helix-turn-helix domain, rpiR family LA358_08140 PF01380 SIS domain LA358_08145 PF00224 Pyruvate kinase, barrel domain LA358_08145 PF02887 Pyruvate kinase, alpha/beta domain LA358_08160 PF02049 Flagellar hook-basal body complex protein FliE LA358_08165 PF08345 Flagellar M-ring protein C-terminal LA358_08165 PF01514 Secretory protein of YscJ/FliF family LA358_08170 PF01706 FliG C-terminal domain LA358_08170 PF14842 FliG N-terminal domain LA358_08170 PF14841 FliG middle domain LA358_08180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA358_08180 PF18269 T3SS EscN ATPase C-terminal domain LA358_08200 PF02154 Flagellar motor switch protein FliM LA358_08200 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LA358_08205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LA358_08210 PF04347 Flagellar biosynthesis protein, FliO LA358_08215 PF00813 FliP family LA358_08220 PF01313 Bacterial export proteins, family 3 LA358_08225 PF01311 Bacterial export proteins, family 1 LA358_08230 PF01312 FlhB HrpN YscU SpaS Family LA358_08235 PF00771 FHIPEP family LA358_08240 PF00448 SRP54-type protein, GTPase domain LA358_08245 PF10609 NUBPL iron-transfer P-loop NTPase LA358_08250 PF04542 Sigma-70 region 2 LA358_08250 PF04545 Sigma-70, region 4 LA358_08250 PF04539 Sigma-70 region 3 LA358_08255 PF00072 Response regulator receiver domain LA358_08260 PF04344 Chemotaxis phosphatase, CheZ LA358_08265 PF01584 CheW-like domain LA358_08265 PF02895 Signal transducing histidine kinase, homodimeric domain LA358_08265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_08265 PF01627 Hpt domain LA358_08265 PF00072 Response regulator receiver domain LA358_08270 PF00072 Response regulator receiver domain LA358_08270 PF01339 CheB methylesterase LA358_08275 PF01618 MotA/TolQ/ExbB proton channel family LA358_08280 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA358_08280 PF00691 OmpA family LA358_08285 PF13614 AAA domain LA358_08295 PF01584 CheW-like domain LA358_08305 PF00005 ABC transporter LA358_08310 PF03379 CcmB protein LA358_08315 PF01578 Cytochrome C assembly protein LA358_08320 PF04995 Heme exporter protein D (CcmD) LA358_08325 PF03100 CcmE LA358_08330 PF01578 Cytochrome C assembly protein LA358_08330 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LA358_08335 PF08534 Redoxin LA358_08340 PF03918 Cytochrome C biogenesis protein LA358_08350 PF04333 MlaA lipoprotein LA358_08355 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LA358_08355 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LA358_08360 PF00462 Glutaredoxin LA358_08365 PF01189 16S rRNA methyltransferase RsmB/F LA358_08365 PF01029 NusB family LA358_08370 PF01243 Pyridoxamine 5'-phosphate oxidase LA358_08370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LA358_08375 PF00043 Glutathione S-transferase, C-terminal domain LA358_08375 PF13417 Glutathione S-transferase, N-terminal domain LA358_08380 PF13508 Acetyltransferase (GNAT) domain LA358_08390 PF08007 Cupin superfamily protein LA358_08395 PF00206 Lyase LA358_08395 PF08328 Adenylosuccinate lyase C-terminal LA358_08400 PF04356 Protein of unknown function (DUF489) LA358_08410 PF00293 NUDIX domain LA358_08415 PF00849 RNA pseudouridylate synthase LA358_08425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA358_08430 PF07690 Major Facilitator Superfamily LA358_08435 PF03466 LysR substrate binding domain LA358_08435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_08440 PF02558 Ketopantoate reductase PanE/ApbA LA358_08440 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain LA358_08445 PF03606 C4-dicarboxylate anaerobic carrier LA358_08450 PF02378 Phosphotransferase system, EIIC LA358_08450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA358_08450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA358_08470 PF04245 37-kD nucleoid-associated bacterial protein LA358_08480 PF04055 Radical SAM superfamily LA358_08480 PF18693 TRAM domain LA358_08480 PF00919 Uncharacterized protein family UPF0004 LA358_08485 PF00072 Response regulator receiver domain LA358_08500 PF02001 Protein of unknown function DUF134 LA358_08515 PF00440 Bacterial regulatory proteins, tetR family LA358_08515 PF08361 MAATS-type transcriptional repressor, C-terminal region LA358_08520 PF00529 HlyD membrane-fusion protein of T1SS LA358_08520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_08525 PF00873 AcrB/AcrD/AcrF family LA358_08530 PF16363 GDP-mannose 4,6 dehydratase LA358_08535 PF04321 RmlD substrate binding domain LA358_08540 PF00483 Nucleotidyl transferase LA358_08545 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LA358_08550 PF01467 Cytidylyltransferase-like LA358_08555 PF00106 short chain dehydrogenase LA358_08560 PF01943 Polysaccharide biosynthesis protein LA358_08565 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LA358_08580 PF00535 Glycosyl transferase family 2 LA358_08585 PF00535 Glycosyl transferase family 2 LA358_08590 PF02397 Bacterial sugar transferase LA358_08595 PF04321 RmlD substrate binding domain LA358_08610 PF02706 Chain length determinant protein LA358_08620 PF00816 H-NS histone family LA358_08625 PF02321 Outer membrane efflux protein LA358_08630 PF12704 MacB-like periplasmic core domain LA358_08630 PF00005 ABC transporter LA358_08630 PF02687 FtsX-like permease family LA358_08635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_08640 PF01368 DHH family LA358_08640 PF02833 DHHA2 domain LA358_08645 PF02463 RecF/RecN/SMC N terminal domain LA358_08650 PF02056 Family 4 glycosyl hydrolase LA358_08650 PF11975 Family 4 glycosyl hydrolase C-terminal domain LA358_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_08655 PF03466 LysR substrate binding domain LA358_08660 PF01513 ATP-NAD kinase LA358_08665 PF01025 GrpE LA358_08670 PF00012 Hsp70 protein LA358_08675 PF00684 DnaJ central domain LA358_08675 PF00226 DnaJ domain LA358_08675 PF01556 DnaJ C terminal domain LA358_08680 PF02308 MgtC family LA358_08695 PF01022 Bacterial regulatory protein, arsR family LA358_08700 PF04143 Sulphur transport LA358_08715 PF00873 AcrB/AcrD/AcrF family LA358_08720 PF03707 Bacterial signalling protein N terminal repeat LA358_08720 PF00563 EAL domain LA358_08720 PF00990 Diguanylate cyclase, GGDEF domain LA358_08725 PF03099 Biotin/lipoate A/B protein ligase family LA358_08725 PF10437 Bacterial lipoate protein ligase C-terminus LA358_08735 PF13460 NAD(P)H-binding LA358_08740 PF04355 SmpA / OmlA family LA358_08745 PF00465 Iron-containing alcohol dehydrogenase LA358_08750 PF01048 Phosphorylase superfamily LA358_08755 PF00849 RNA pseudouridylate synthase LA358_08760 PF01156 Inosine-uridine preferring nucleoside hydrolase LA358_08775 PF07509 Protein of unknown function (DUF1523) LA358_08780 PF12729 Four helix bundle sensory module for signal transduction LA358_08780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_08780 PF00672 HAMP domain LA358_08785 PF01810 LysE type translocator LA358_08790 PF03471 Transporter associated domain LA358_08790 PF00999 Sodium/hydrogen exchanger family LA358_08790 PF02080 TrkA-C domain LA358_08800 PF03471 Transporter associated domain LA358_08800 PF00999 Sodium/hydrogen exchanger family LA358_08800 PF02080 TrkA-C domain LA358_08805 PF00990 Diguanylate cyclase, GGDEF domain LA358_08815 PF02557 D-alanyl-D-alanine carboxypeptidase LA358_08820 PF07687 Peptidase dimerisation domain LA358_08820 PF01546 Peptidase family M20/M25/M40 LA358_08825 PF03960 ArsC family LA358_08835 PF03606 C4-dicarboxylate anaerobic carrier LA358_08840 PF07687 Peptidase dimerisation domain LA358_08840 PF01546 Peptidase family M20/M25/M40 LA358_08850 PF03605 Anaerobic c4-dicarboxylate membrane transporter LA358_08855 PF00152 tRNA synthetases class II (D, K and N) LA358_08855 PF01336 OB-fold nucleic acid binding domain LA358_08870 PF00202 Aminotransferase class-III LA358_08875 PF06968 Biotin and Thiamin Synthesis associated domain LA358_08875 PF04055 Radical SAM superfamily LA358_08880 PF00155 Aminotransferase class I and II LA358_08885 PF12697 Alpha/beta hydrolase family LA358_08885 PF08241 Methyltransferase domain LA358_08895 PF01435 Peptidase family M48 LA358_08900 PF00111 2Fe-2S iron-sulfur cluster binding domain LA358_08900 PF03473 MOSC domain LA358_08900 PF00111 2Fe-2S iron-sulfur cluster binding domain LA358_08900 PF03473 MOSC domain LA358_08900 PF03476 MOSC N-terminal beta barrel domain LA358_08900 PF03476 MOSC N-terminal beta barrel domain LA358_08905 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LA358_08905 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LA358_08905 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_08910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA358_08910 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LA358_08910 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LA358_08910 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LA358_08910 PF10371 Domain of unknown function LA358_08920 PF01370 NAD dependent epimerase/dehydratase family LA358_08925 PF03061 Thioesterase superfamily LA358_08935 PF03372 Endonuclease/Exonuclease/phosphatase family LA358_08940 PF00462 Glutaredoxin LA358_08945 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LA358_08950 PF00271 Helicase conserved C-terminal domain LA358_08950 PF04851 Type III restriction enzyme, res subunit LA358_08955 PF00529 HlyD membrane-fusion protein of T1SS LA358_08955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_08960 PF11742 Protein of unknown function (DUF3302) LA358_08965 PF02554 Carbon starvation protein CstA LA358_08970 PF04397 LytTr DNA-binding domain LA358_08970 PF00072 Response regulator receiver domain LA358_08975 PF07694 5TMR of 5TMR-LYT LA358_08975 PF06580 Histidine kinase LA358_08980 PF01966 HD domain LA358_08980 PF11871 Domain of unknown function (DUF3391) LA358_08985 PF08019 Phosphoethanolamine transferase EptA/EptB LA358_08985 PF00884 Sulfatase LA358_08990 PF01047 MarR family LA358_08990 PF00480 ROK family LA358_08995 PF01979 Amidohydrolase family LA358_09000 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LA358_09005 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LA358_09005 PF00367 phosphotransferase system, EIIB LA358_09005 PF02378 Phosphotransferase system, EIIC LA358_09010 PF03173 Putative carbohydrate binding domain LA358_09010 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LA358_09010 PF00728 Glycosyl hydrolase family 20, catalytic domain LA358_09010 PF02838 Glycosyl hydrolase family 20, domain 2 LA358_09015 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA358_09015 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LA358_09020 PF01475 Ferric uptake regulator family LA358_09030 PF00258 Flavodoxin LA358_09035 PF01402 Ribbon-helix-helix protein, copG family LA358_09045 PF12697 Alpha/beta hydrolase family LA358_09050 PF17206 SeqA protein N-terminal domain LA358_09050 PF03925 SeqA protein C-terminal domain LA358_09055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LA358_09055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LA358_09055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LA358_09055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LA358_09065 PF00578 AhpC/TSA family LA358_09070 PF13406 Transglycosylase SLT domain LA358_09075 PF01066 CDP-alcohol phosphatidyltransferase LA358_09080 PF00005 ABC transporter LA358_09085 PF00528 Binding-protein-dependent transport system inner membrane component LA358_09090 PF13416 Bacterial extracellular solute-binding protein LA358_09095 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_09095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA358_09095 PF00403 Heavy-metal-associated domain LA358_09100 PF02627 Carboxymuconolactone decarboxylase family LA358_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_09115 PF03466 LysR substrate binding domain LA358_09130 PF07244 Surface antigen variable number repeat LA358_09130 PF01103 Surface antigen LA358_09130 PF17243 POTRA domain TamA domain 1 LA358_09135 PF04357 TamB, inner membrane protein subunit of TAM complex LA358_09155 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LA358_09160 PF03707 Bacterial signalling protein N terminal repeat LA358_09160 PF00990 Diguanylate cyclase, GGDEF domain LA358_09160 PF00563 EAL domain LA358_09165 PF01464 Transglycosylase SLT domain LA358_09165 PF14718 Soluble lytic murein transglycosylase L domain LA358_09170 PF00356 Bacterial regulatory proteins, lacI family LA358_09175 PF00793 DAHP synthetase I family LA358_09180 PF07715 TonB-dependent Receptor Plug Domain LA358_09180 PF00593 TonB dependent receptor LA358_09185 PF00425 chorismate binding enzyme LA358_09190 PF13193 AMP-binding enzyme C-terminal domain LA358_09190 PF00501 AMP-binding enzyme LA358_09195 PF00857 Isochorismatase family LA358_09195 PF00550 Phosphopantetheine attachment site LA358_09205 PF00550 Phosphopantetheine attachment site LA358_09205 PF00668 Condensation domain LA358_09205 PF13193 AMP-binding enzyme C-terminal domain LA358_09205 PF00975 Thioesterase domain LA358_09205 PF00501 AMP-binding enzyme LA358_09215 PF00676 Dehydrogenase E1 component LA358_09220 PF02780 Transketolase, C-terminal domain LA358_09220 PF02779 Transketolase, pyrimidine binding domain LA358_09225 PF02817 e3 binding domain LA358_09225 PF00364 Biotin-requiring enzyme LA358_09225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LA358_09230 PF00313 'Cold-shock' DNA-binding domain LA358_09255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_09260 PF00892 EamA-like transporter family LA358_09265 PF00455 DeoR C terminal sensor domain LA358_09265 PF08220 DeoR-like helix-turn-helix domain LA358_09270 PF01228 Glycine radical LA358_09270 PF02901 Pyruvate formate lyase-like LA358_09275 PF04055 Radical SAM superfamily LA358_09280 PF00923 Transaldolase/Fructose-6-phosphate aldolase LA358_09290 PF01966 HD domain LA358_09295 PF01479 S4 domain LA358_09295 PF00849 RNA pseudouridylate synthase LA358_09305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_09310 PF12850 Calcineurin-like phosphoesterase superfamily domain LA358_09325 PF13144 Chaperone for flagella basal body P-ring formation LA358_09330 PF01584 CheW-like domain LA358_09330 PF00072 Response regulator receiver domain LA358_09335 PF01739 CheR methyltransferase, SAM binding domain LA358_09335 PF03705 CheR methyltransferase, all-alpha domain LA358_09340 PF00460 Flagella basal body rod protein LA358_09345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_09345 PF00460 Flagella basal body rod protein LA358_09355 PF07559 Flagellar basal body protein FlaE LA358_09355 PF00460 Flagella basal body rod protein LA358_09355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_09360 PF00460 Flagella basal body rod protein LA358_09360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_09365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_09365 PF00460 Flagella basal body rod protein LA358_09370 PF02107 Flagellar L-ring protein LA358_09375 PF02119 Flagellar P-ring protein LA358_09380 PF10135 Rod binding protein LA358_09380 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LA358_09385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA358_09385 PF07196 Flagellin hook IN motif LA358_09390 PF00669 Bacterial flagellin N-terminal helical region LA358_09395 PF01769 Divalent cation transporter LA358_09395 PF03448 MgtE intracellular N domain LA358_09395 PF00571 CBS domain LA358_09400 PF02541 Ppx/GppA phosphatase family LA358_09405 PF13089 Polyphosphate kinase N-terminal domain LA358_09405 PF17941 Polyphosphate kinase C-terminal domain 1 LA358_09405 PF02503 Polyphosphate kinase middle domain LA358_09405 PF13090 Polyphosphate kinase C-terminal domain 2 LA358_09410 PF01842 ACT domain LA358_09420 PF06490 Flagellar regulatory protein FleQ LA358_09420 PF00158 Sigma-54 interaction domain LA358_09420 PF02954 Bacterial regulatory protein, Fis family LA358_09425 PF00512 His Kinase A (phospho-acceptor) domain LA358_09425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_09425 PF13188 PAS domain LA358_09430 PF02954 Bacterial regulatory protein, Fis family LA358_09430 PF00072 Response regulator receiver domain LA358_09430 PF00158 Sigma-54 interaction domain LA358_09435 PF01784 NIF3 (NGG1p interacting factor 3) LA358_09440 PF00551 Formyl transferase LA358_09445 PF02769 AIR synthase related protein, C-terminal domain LA358_09445 PF00586 AIR synthase related protein, N-terminal domain LA358_09460 PF00308 Bacterial dnaA protein LA358_09465 PF00463 Isocitrate lyase family LA358_09470 PF01274 Malate synthase LA358_09485 PF14437 MafB19-like deaminase LA358_09490 PF00528 Binding-protein-dependent transport system inner membrane component LA358_09495 PF00528 Binding-protein-dependent transport system inner membrane component LA358_09500 PF00005 ABC transporter LA358_09505 PF01895 PhoU domain LA358_09510 PF03471 Transporter associated domain LA358_09510 PF01595 Cyclin M transmembrane N-terminal domain LA358_09510 PF00571 CBS domain LA358_09520 PF04116 Fatty acid hydroxylase superfamily LA358_09530 PF00005 ABC transporter LA358_09535 PF00528 Binding-protein-dependent transport system inner membrane component LA358_09540 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_09545 PF07690 Major Facilitator Superfamily LA358_09550 PF05231 MASE1 LA358_09550 PF07730 Histidine kinase LA358_09550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_09555 PF00196 Bacterial regulatory proteins, luxR family LA358_09555 PF00072 Response regulator receiver domain LA358_09560 PF14760 Rnk N-terminus LA358_09560 PF01272 Transcription elongation factor, GreA/GreB, C-term LA358_09575 PF00245 Alkaline phosphatase LA358_09580 PF00245 Alkaline phosphatase LA358_09585 PF01926 50S ribosome-binding GTPase LA358_09590 PF07690 Major Facilitator Superfamily LA358_09595 PF00850 Histone deacetylase domain LA358_09605 PF13307 Helicase C-terminal domain LA358_09605 PF06733 DEAD_2 LA358_09610 PF13609 Gram-negative porin LA358_09615 PF02153 Prephenate dehydrogenase LA358_09615 PF01817 Chorismate mutase type II LA358_09620 PF00793 DAHP synthetase I family LA358_09625 PF00483 Nucleotidyl transferase LA358_09630 PF02355 Protein export membrane protein LA358_09630 PF07549 SecD/SecF GG Motif LA358_09635 PF02355 Protein export membrane protein LA358_09635 PF07549 SecD/SecF GG Motif LA358_09635 PF13721 SecD export protein N-terminal TM region LA358_09670 PF01230 HIT domain LA358_09675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_09675 PF00672 HAMP domain LA358_09680 PF01810 LysE type translocator LA358_09690 PF01979 Amidohydrolase family LA358_09705 PF00375 Sodium:dicarboxylate symporter family LA358_09710 PF01638 HxlR-like helix-turn-helix LA358_09715 PF03358 NADPH-dependent FMN reductase LA358_09725 PF05661 Protein of unknown function (DUF808) LA358_09730 PF08439 Oligopeptidase F LA358_09730 PF01432 Peptidase family M3 LA358_09735 PF00860 Permease family LA358_09740 PF05728 Uncharacterised protein family (UPF0227) LA358_09745 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_09765 PF04055 Radical SAM superfamily LA358_09770 PF00563 EAL domain LA358_09770 PF03707 Bacterial signalling protein N terminal repeat LA358_09770 PF00990 Diguanylate cyclase, GGDEF domain LA358_09775 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_09775 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA358_09785 PF01835 MG2 domain LA358_09785 PF17962 Bacterial macroglobulin domain 6 LA358_09785 PF07678 A-macroglobulin TED domain LA358_09785 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LA358_09785 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LA358_09785 PF07703 Alpha-2-macroglobulin bait region domain LA358_09785 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LA358_09785 PF00207 Alpha-2-macroglobulin family LA358_09785 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LA358_09790 PF06832 Penicillin-Binding Protein C-terminus Family LA358_09790 PF00912 Transglycosylase LA358_09790 PF00905 Penicillin binding protein transpeptidase domain LA358_09815 PF00075 RNase H LA358_09860 PF02796 Helix-turn-helix domain of resolvase LA358_09860 PF00239 Resolvase, N terminal domain LA358_09875 PF10711 Hypothetical protein (DUF2513) LA358_09885 PF02568 Thiamine biosynthesis protein (ThiI) LA358_09885 PF02926 THUMP domain LA358_09895 PF03458 UPF0126 domain LA358_09900 PF00700 Bacterial flagellin C-terminal helical region LA358_09900 PF00669 Bacterial flagellin N-terminal helical region LA358_09905 PF00700 Bacterial flagellin C-terminal helical region LA358_09905 PF00700 Bacterial flagellin C-terminal helical region LA358_09905 PF00669 Bacterial flagellin N-terminal helical region LA358_09905 PF00669 Bacterial flagellin N-terminal helical region LA358_09910 PF03646 FlaG protein LA358_09915 PF07196 Flagellin hook IN motif LA358_09915 PF07195 Flagellar hook-associated protein 2 C-terminus LA358_09915 PF02465 Flagellar hook-associated protein 2 N-terminus LA358_09920 PF02561 Flagellar protein FliS LA358_09945 PF03102 NeuB family LA358_09945 PF08666 SAF domain LA358_09955 PF02348 Cytidylyltransferase LA358_09975 PF00501 AMP-binding enzyme LA358_09975 PF13193 AMP-binding enzyme C-terminal domain LA358_09990 PF00535 Glycosyl transferase family 2 LA358_09995 PF03275 UDP-galactopyranose mutase LA358_10025 PF02310 B12 binding domain LA358_10025 PF04055 Radical SAM superfamily LA358_10030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LA358_10035 PF02719 Polysaccharide biosynthesis protein LA358_10040 PF01497 Periplasmic binding protein LA358_10050 PF01048 Phosphorylase superfamily LA358_10055 PF02535 ZIP Zinc transporter LA358_10060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_10060 PF00672 HAMP domain LA358_10065 PF00459 Inositol monophosphatase family LA358_10075 PF00043 Glutathione S-transferase, C-terminal domain LA358_10075 PF02798 Glutathione S-transferase, N-terminal domain LA358_10080 PF07690 Major Facilitator Superfamily LA358_10085 PF00149 Calcineurin-like phosphoesterase LA358_10095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LA358_10100 PF01406 tRNA synthetases class I (C) catalytic domain LA358_10100 PF09190 DALR domain LA358_10110 PF13737 Transposase DDE domain LA358_10120 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system LA358_10175 PF01169 Uncharacterized protein family UPF0016 LA358_10180 PF01253 Translation initiation factor SUI1 LA358_10190 PF07664 Ferrous iron transport protein B C terminus LA358_10190 PF17910 FeoB cytosolic helical domain LA358_10190 PF07670 Nucleoside recognition LA358_10190 PF02421 Ferrous iron transport protein B LA358_10205 PF00271 Helicase conserved C-terminal domain LA358_10205 PF00270 DEAD/DEAH box helicase LA358_10210 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LA358_10210 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_10215 PF01493 GXGXG motif LA358_10215 PF04898 Glutamate synthase central domain LA358_10215 PF00310 Glutamine amidotransferases class-II LA358_10215 PF01645 Conserved region in glutamate synthase LA358_10220 PF04055 Radical SAM superfamily LA358_10220 PF16199 Radical_SAM C-terminal domain LA358_10225 PF00664 ABC transporter transmembrane region LA358_10225 PF03412 Peptidase C39 family LA358_10225 PF00005 ABC transporter LA358_10285 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_10285 PF13192 Thioredoxin domain LA358_10290 PF10417 C-terminal domain of 1-Cys peroxiredoxin LA358_10290 PF00578 AhpC/TSA family LA358_10295 PF00571 CBS domain LA358_10300 PF02547 Queuosine biosynthesis protein LA358_10305 PF01702 Queuine tRNA-ribosyltransferase LA358_10310 PF02699 Preprotein translocase subunit LA358_10315 PF07549 SecD/SecF GG Motif LA358_10315 PF13721 SecD export protein N-terminal TM region LA358_10315 PF02355 Protein export membrane protein LA358_10320 PF07549 SecD/SecF GG Motif LA358_10320 PF02355 Protein export membrane protein LA358_10330 PF07719 Tetratricopeptide repeat LA358_10330 PF13181 Tetratricopeptide repeat LA358_10335 PF01136 Peptidase family U32 LA358_10340 PF01136 Peptidase family U32 LA358_10345 PF02036 SCP-2 sterol transfer family LA358_10355 PF00588 SpoU rRNA Methylase family LA358_10360 PF02082 Transcriptional regulator LA358_10365 PF00266 Aminotransferase class-V LA358_10370 PF01592 NifU-like N terminal domain LA358_10375 PF01521 Iron-sulphur cluster biosynthesis LA358_10380 PF07743 HSCB C-terminal oligomerisation domain LA358_10385 PF00012 Hsp70 protein LA358_10390 PF00111 2Fe-2S iron-sulfur cluster binding domain LA358_10395 PF12404 Peptidase LA358_10395 PF00883 Cytosol aminopeptidase family, catalytic domain LA358_10400 PF12404 Peptidase LA358_10400 PF00883 Cytosol aminopeptidase family, catalytic domain LA358_10405 PF00334 Nucleoside diphosphate kinase LA358_10410 PF04055 Radical SAM superfamily LA358_10420 PF13464 Domain of unknown function (DUF4115) LA358_10425 PF04551 GcpE protein LA358_10430 PF13393 Histidyl-tRNA synthetase LA358_10430 PF03129 Anticodon binding domain LA358_10435 PF09976 Tetratricopeptide repeat-like domain LA358_10440 PF13360 PQQ-like domain LA358_10445 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LA358_10445 PF01926 50S ribosome-binding GTPase LA358_10450 PF07191 zinc-ribbons LA358_10455 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_10455 PF01464 Transglycosylase SLT domain LA358_10460 PF02769 AIR synthase related protein, C-terminal domain LA358_10460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LA358_10460 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LA358_10465 PF13726 Na+-H+ antiporter family LA358_10465 PF03553 Na+/H+ antiporter family LA358_10470 PF00929 Exonuclease LA358_10475 PF01569 PAP2 superfamily LA358_10480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA358_10480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA358_10480 PF11890 Domain of unknown function (DUF3410) LA358_10485 PF01118 Semialdehyde dehydrogenase, NAD binding domain LA358_10485 PF02774 Semialdehyde dehydrogenase, dimerisation domain LA358_10495 PF01416 tRNA pseudouridine synthase LA358_10500 PF17848 Acetyl-coA carboxylase zinc finger domain LA358_10500 PF01039 Carboxyl transferase domain LA358_10505 PF08245 Mur ligase middle domain LA358_10505 PF02875 Mur ligase family, glutamate ligase domain LA358_10510 PF05036 Sporulation related domain LA358_10515 PF01906 Putative heavy-metal-binding LA358_10520 PF00884 Sulfatase LA358_10530 PF00696 Amino acid kinase family LA358_10530 PF01842 ACT domain LA358_10535 PF00696 Amino acid kinase family LA358_10535 PF00583 Acetyltransferase (GNAT) family LA358_10540 PF01625 Peptide methionine sulfoxide reductase LA358_10560 PF00561 alpha/beta hydrolase fold LA358_10565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA358_10575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_10575 PF03466 LysR substrate binding domain LA358_10580 PF02652 L-lactate permease LA358_10585 PF02754 Cysteine-rich domain LA358_10590 PF02589 LUD domain LA358_10590 PF11870 Domain of unknown function (DUF3390) LA358_10590 PF13183 4Fe-4S dicluster domain LA358_10595 PF02589 LUD domain LA358_10600 PF01565 FAD binding domain LA358_10600 PF02913 FAD linked oxidases, C-terminal domain LA358_10615 PF02687 FtsX-like permease family LA358_10615 PF12704 MacB-like periplasmic core domain LA358_10620 PF00005 ABC transporter LA358_10630 PF03600 Citrate transporter LA358_10640 PF07690 Major Facilitator Superfamily LA358_10660 PF01593 Flavin containing amine oxidoreductase LA358_10665 PF03239 Iron permease FTR1 family LA358_10690 PF01740 STAS domain LA358_10690 PF00916 Sulfate permease family LA358_10700 PF07690 Major Facilitator Superfamily LA358_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_10705 PF03466 LysR substrate binding domain LA358_10710 PF00925 GTP cyclohydrolase II LA358_10715 PF02224 Cytidylate kinase LA358_10720 PF00575 S1 RNA binding domain LA358_10725 PF00216 Bacterial DNA-binding protein LA358_10735 PF18073 Rubredoxin metal binding domain LA358_10740 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LA358_10755 PF06508 Queuosine biosynthesis protein QueC LA358_10760 PF04055 Radical SAM superfamily LA358_10765 PF12843 Putative quorum-sensing-regulated virulence factor LA358_10770 PF01923 Cobalamin adenosyltransferase LA358_10775 PF00816 H-NS histone family LA358_10780 PF03553 Na+/H+ antiporter family LA358_10785 PF00265 Thymidine kinase LA358_10795 PF10722 Putative bacterial sensory transduction regulator LA358_10805 PF01168 Alanine racemase, N-terminal domain LA358_10805 PF00842 Alanine racemase, C-terminal domain LA358_10810 PF13662 Toprim domain LA358_10810 PF02132 RecR protein LA358_10815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_10815 PF00183 Hsp90 protein LA358_10820 PF00005 ABC transporter LA358_10825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA358_10825 PF00005 ABC transporter LA358_10830 PF00528 Binding-protein-dependent transport system inner membrane component LA358_10830 PF12911 N-terminal TM domain of oligopeptide transport permease C LA358_10835 PF00528 Binding-protein-dependent transport system inner membrane component LA358_10840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_10845 PF02954 Bacterial regulatory protein, Fis family LA358_10845 PF00158 Sigma-54 interaction domain LA358_10850 PF04012 PspA/IM30 family LA358_10855 PF06667 Phage shock protein B LA358_10865 PF04317 YcjX-like family, DUF463 LA358_10870 PF05128 Domain of unknown function (DUF697) LA358_10875 PF03466 LysR substrate binding domain LA358_10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_10880 PF13416 Bacterial extracellular solute-binding protein LA358_10885 PF00005 ABC transporter LA358_10885 PF08402 TOBE domain LA358_10890 PF00528 Binding-protein-dependent transport system inner membrane component LA358_10895 PF00528 Binding-protein-dependent transport system inner membrane component LA358_10900 PF00171 Aldehyde dehydrogenase family LA358_10905 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LA358_10915 PF18024 Helix-turn-helix domain LA358_10915 PF00158 Sigma-54 interaction domain LA358_10925 PF17152 Periplasmic sensor domain LA358_10925 PF00990 Diguanylate cyclase, GGDEF domain LA358_10930 PF00691 OmpA family LA358_10935 PF03741 Integral membrane protein TerC family LA358_10945 PF08891 YfcL protein LA358_10950 PF00501 AMP-binding enzyme LA358_10955 PF01053 Cys/Met metabolism PLP-dependent enzyme LA358_10975 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LA358_10975 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LA358_10980 PF00313 'Cold-shock' DNA-binding domain LA358_10985 PF02617 ATP-dependent Clp protease adaptor protein ClpS LA358_10990 PF00004 ATPase family associated with various cellular activities (AAA) LA358_10990 PF17871 AAA lid domain LA358_10990 PF02861 Clp amino terminal domain, pathogenicity island component LA358_10990 PF10431 C-terminal, D2-small domain, of ClpB protein LA358_10990 PF07724 AAA domain (Cdc48 subfamily) LA358_10995 PF01176 Translation initiation factor 1A / IF-1 LA358_11000 PF04377 Arginine-tRNA-protein transferase, C terminus LA358_11000 PF04376 Arginine-tRNA-protein transferase, N terminus LA358_11005 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LA358_11010 PF05433 Glycine zipper 2TM domain LA358_11015 PF00990 Diguanylate cyclase, GGDEF domain LA358_11020 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_11030 PF01037 Lrp/AsnC ligand binding domain LA358_11035 PF17854 FtsK alpha domain LA358_11035 PF09397 Ftsk gamma domain LA358_11035 PF01580 FtsK/SpoIIIE family LA358_11035 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LA358_11040 PF03548 Outer membrane lipoprotein carrier protein LolA LA358_11045 PF12002 MgsA AAA+ ATPase C terminal LA358_11045 PF00004 ATPase family associated with various cellular activities (AAA) LA358_11045 PF16193 AAA C-terminal domain LA358_11050 PF02403 Seryl-tRNA synthetase N-terminal domain LA358_11050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA358_11055 PF02674 Colicin V production protein LA358_11060 PF00156 Phosphoribosyl transferase domain LA358_11065 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LA358_11070 PF05191 Adenylate kinase, active site lid LA358_11075 PF00762 Ferrochelatase LA358_11085 PF00294 pfkB family carbohydrate kinase LA358_11090 PF00672 HAMP domain LA358_11090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_11090 PF17200 Single Cache domain 2 LA358_11105 PF03707 Bacterial signalling protein N terminal repeat LA358_11105 PF00563 EAL domain LA358_11105 PF00990 Diguanylate cyclase, GGDEF domain LA358_11110 PF00483 Nucleotidyl transferase LA358_11120 PF07273 Protein of unknown function (DUF1439) LA358_11130 PF11143 Protein of unknown function (DUF2919) LA358_11135 PF01544 CorA-like Mg2+ transporter protein LA358_11145 PF01012 Electron transfer flavoprotein domain LA358_11150 PF00766 Electron transfer flavoprotein FAD-binding domain LA358_11150 PF01012 Electron transfer flavoprotein domain LA358_11155 PF00266 Aminotransferase class-V LA358_11160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LA358_11165 PF00793 DAHP synthetase I family LA358_11170 PF02743 Cache domain LA358_11170 PF00672 HAMP domain LA358_11170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_11175 PF04055 Radical SAM superfamily LA358_11180 PF00271 Helicase conserved C-terminal domain LA358_11180 PF00270 DEAD/DEAH box helicase LA358_11185 PF00255 Glutathione peroxidase LA358_11195 PF07478 D-ala D-ala ligase C-terminus LA358_11195 PF01820 D-ala D-ala ligase N-terminus LA358_11200 PF13742 OB-fold nucleic acid binding domain LA358_11200 PF02601 Exonuclease VII, large subunit LA358_11205 PF12792 CSS motif domain associated with EAL LA358_11205 PF00563 EAL domain LA358_11210 PF00571 CBS domain LA358_11210 PF00478 IMP dehydrogenase / GMP reductase domain LA358_11215 PF00117 Glutamine amidotransferase class-I LA358_11215 PF00958 GMP synthase C terminal domain LA358_11215 PF02540 NAD synthase LA358_11235 PF05724 Thiopurine S-methyltransferase (TPMT) LA358_11240 PF00675 Insulinase (Peptidase family M16) LA358_11240 PF16187 Middle or third domain of peptidase_M16 LA358_11240 PF05193 Peptidase M16 inactive domain LA358_11245 PF00300 Histidine phosphatase superfamily (branch 1) LA358_11255 PF00892 EamA-like transporter family LA358_11260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_11265 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LA358_11270 PF02559 CarD-like/TRCF domain LA358_11270 PF00270 DEAD/DEAH box helicase LA358_11270 PF00271 Helicase conserved C-terminal domain LA358_11270 PF03461 TRCF domain LA358_11270 PF17757 UvrB interaction domain LA358_11280 PF02687 FtsX-like permease family LA358_11280 PF12704 MacB-like periplasmic core domain LA358_11285 PF00005 ABC transporter LA358_11290 PF12704 MacB-like periplasmic core domain LA358_11290 PF02687 FtsX-like permease family LA358_11305 PF05697 Bacterial trigger factor protein (TF) LA358_11305 PF05698 Bacterial trigger factor protein (TF) C-terminus LA358_11305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA358_11310 PF00574 Clp protease LA358_11315 PF07724 AAA domain (Cdc48 subfamily) LA358_11315 PF10431 C-terminal, D2-small domain, of ClpB protein LA358_11315 PF06689 ClpX C4-type zinc finger LA358_11320 PF00004 ATPase family associated with various cellular activities (AAA) LA358_11320 PF02190 ATP-dependent protease La (LON) substrate-binding domain LA358_11320 PF05362 Lon protease (S16) C-terminal proteolytic domain LA358_11325 PF00216 Bacterial DNA-binding protein LA358_11330 PF13145 PPIC-type PPIASE domain LA358_11335 PF12848 ABC transporter LA358_11335 PF00005 ABC transporter LA358_11340 PF00041 Fibronectin type III domain LA358_11340 PF02018 Carbohydrate binding domain LA358_11340 PF00704 Glycosyl hydrolases family 18 LA358_11345 PF00474 Sodium:solute symporter family LA358_11350 PF04341 Protein of unknown function, DUF485 LA358_11365 PF00378 Enoyl-CoA hydratase/isomerase LA358_11370 PF01235 Sodium:alanine symporter family LA358_11380 PF06167 Glucose-regulated metallo-peptidase M90 LA358_11385 PF01184 GPR1/FUN34/yaaH family LA358_11400 PF00376 MerR family regulatory protein LA358_11400 PF09278 MerR, DNA binding LA358_11405 PF00682 HMGL-like LA358_11410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA358_11410 PF00364 Biotin-requiring enzyme LA358_11410 PF00289 Biotin carboxylase, N-terminal domain LA358_11410 PF02785 Biotin carboxylase C-terminal domain LA358_11415 PF00378 Enoyl-CoA hydratase/isomerase LA358_11420 PF01039 Carboxyl transferase domain LA358_11425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA358_11425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA358_11425 PF02770 Acyl-CoA dehydrogenase, middle domain LA358_11430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA358_11430 PF02770 Acyl-CoA dehydrogenase, middle domain LA358_11430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA358_11435 PF00378 Enoyl-CoA hydratase/isomerase LA358_11440 PF00378 Enoyl-CoA hydratase/isomerase LA358_11445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LA358_11445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LA358_11455 PF13520 Amino acid permease LA358_11460 PF01925 Sulfite exporter TauE/SafE LA358_11470 PF14659 Phage integrase, N-terminal SAM-like domain LA358_11470 PF00589 Phage integrase family LA358_11485 PF02384 N-6 DNA Methylase LA358_11490 PF01420 Type I restriction modification DNA specificity domain LA358_11515 PF04002 RadC-like JAB domain LA358_11530 PF00239 Resolvase, N terminal domain LA358_11530 PF02796 Helix-turn-helix domain of resolvase LA358_11560 PF03466 LysR substrate binding domain LA358_11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_11565 PF12146 Serine aminopeptidase, S33 LA358_11570 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LA358_11570 PF07676 WD40-like Beta Propeller Repeat LA358_11570 PF00326 Prolyl oligopeptidase family LA358_11580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_11580 PF03466 LysR substrate binding domain LA358_11585 PF00248 Aldo/keto reductase family LA358_11590 PF12706 Beta-lactamase superfamily domain LA358_11595 PF09308 LuxQ, periplasmic LA358_11595 PF00512 His Kinase A (phospho-acceptor) domain LA358_11595 PF00072 Response regulator receiver domain LA358_11595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_11625 PF00211 Adenylate and Guanylate cyclase catalytic domain LA358_11625 PF00072 Response regulator receiver domain LA358_11630 PF00534 Glycosyl transferases group 1 LA358_11635 PF02397 Bacterial sugar transferase LA358_11645 PF13439 Glycosyltransferase Family 4 LA358_11645 PF00534 Glycosyl transferases group 1 LA358_11715 PF00534 Glycosyl transferases group 1 LA358_11720 PF00862 Sucrose synthase LA358_11720 PF00534 Glycosyl transferases group 1 LA358_11725 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LA358_11725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LA358_11730 PF13247 4Fe-4S dicluster domain LA358_11735 PF03916 Polysulphide reductase, NrfD LA358_11740 PF00374 Nickel-dependent hydrogenase LA358_11745 PF01750 Hydrogenase maturation protease LA358_11750 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE LA358_11755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_11760 PF00528 Binding-protein-dependent transport system inner membrane component LA358_11765 PF12911 N-terminal TM domain of oligopeptide transport permease C LA358_11765 PF00528 Binding-protein-dependent transport system inner membrane component LA358_11770 PF00005 ABC transporter LA358_11775 PF00005 ABC transporter LA358_11780 PF02492 CobW/HypB/UreG, nucleotide-binding domain LA358_11790 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LA358_11795 PF00586 AIR synthase related protein, N-terminal domain LA358_11795 PF02769 AIR synthase related protein, C-terminal domain LA358_11800 PF01924 Hydrogenase formation hypA family LA358_11805 PF01455 HupF/HypC family LA358_11810 PF00708 Acylphosphatase LA358_11810 PF17788 HypF Kae1-like domain LA358_11810 PF01300 Telomere recombination LA358_11810 PF07503 HypF finger LA358_11815 PF00009 Elongation factor Tu GTP binding domain LA358_11815 PF09106 Elongation factor SelB, winged helix LA358_11815 PF09107 Elongation factor SelB, winged helix LA358_11815 PF09105 Elongation factor SelB, winged helix LA358_11815 PF03144 Elongation factor Tu domain 2 LA358_11820 PF12390 Selenocysteine synthase N terminal LA358_11820 PF03841 L-seryl-tRNA selenium transferase LA358_11830 PF01750 Hydrogenase maturation protease LA358_11835 PF07450 Formate hydrogenlyase maturation protein HycH LA358_11840 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LA358_11845 PF12838 4Fe-4S dicluster domain LA358_11850 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LA358_11850 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LA358_11850 PF00374 Nickel-dependent hydrogenase LA358_11855 PF00146 NADH dehydrogenase LA358_11860 PF00361 Proton-conducting membrane transporter LA358_11865 PF00037 4Fe-4S binding domain LA358_11865 PF12798 4Fe-4S binding domain LA358_11880 PF13247 4Fe-4S dicluster domain LA358_11880 PF12800 4Fe-4S binding domain LA358_11895 PF01590 GAF domain LA358_11895 PF02954 Bacterial regulatory protein, Fis family LA358_11895 PF00158 Sigma-54 interaction domain LA358_11900 PF02634 FdhD/NarQ family LA358_11905 PF01118 Semialdehyde dehydrogenase, NAD binding domain LA358_11905 PF02774 Semialdehyde dehydrogenase, dimerisation domain LA358_11910 PF01266 FAD dependent oxidoreductase LA358_11915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LA358_11915 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LA358_11920 PF04172 LrgB-like family LA358_11925 PF03788 LrgA family LA358_11940 PF08411 Exonuclease C-terminal LA358_11940 PF00929 Exonuclease LA358_11995 PF00571 CBS domain LA358_11995 PF01368 DHH family LA358_11995 PF01743 Poly A polymerase head domain LA358_11995 PF02272 DHHA1 domain LA358_12000 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LA358_12000 PF00270 DEAD/DEAH box helicase LA358_12000 PF04408 Helicase associated domain (HA2) LA358_12000 PF00271 Helicase conserved C-terminal domain LA358_12000 PF11898 Domain of unknown function (DUF3418) LA358_12010 PF01386 Ribosomal L25p family LA358_12015 PF09278 MerR, DNA binding LA358_12015 PF00376 MerR family regulatory protein LA358_12020 PF00108 Thiolase, N-terminal domain LA358_12020 PF02803 Thiolase, C-terminal domain LA358_12025 PF00563 EAL domain LA358_12025 PF08668 HDOD domain LA358_12030 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LA358_12035 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LA358_12045 PF04542 Sigma-70 region 2 LA358_12045 PF08281 Sigma-70, region 4 LA358_12055 PF07584 Aerotolerance regulator N-terminal LA358_12055 PF13519 von Willebrand factor type A domain LA358_12070 PF01882 Protein of unknown function DUF58 LA358_12075 PF17863 AAA lid domain LA358_12075 PF07726 ATPase family associated with various cellular activities (AAA) LA358_12080 PF02803 Thiolase, C-terminal domain LA358_12080 PF00108 Thiolase, N-terminal domain LA358_12085 PF00378 Enoyl-CoA hydratase/isomerase LA358_12085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LA358_12085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LA358_12090 PF04293 SpoVR like protein LA358_12095 PF04285 Protein of unknown function (DUF444) LA358_12100 PF08298 PrkA AAA domain LA358_12100 PF06798 PrkA serine protein kinase C-terminal domain LA358_12105 PF09382 RQC domain LA358_12105 PF16124 RecQ zinc-binding LA358_12105 PF00570 HRDC domain LA358_12105 PF00271 Helicase conserved C-terminal domain LA358_12105 PF00270 DEAD/DEAH box helicase LA358_12110 PF00375 Sodium:dicarboxylate symporter family LA358_12115 PF03222 Tryptophan/tyrosine permease family LA358_12120 PF00293 NUDIX domain LA358_12125 PF00425 chorismate binding enzyme LA358_12125 PF04715 Anthranilate synthase component I, N terminal region LA358_12135 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LA358_12135 PF01502 Phosphoribosyl-AMP cyclohydrolase LA358_12140 PF00977 Histidine biosynthesis protein LA358_12145 PF00977 Histidine biosynthesis protein LA358_12150 PF00117 Glutamine amidotransferase class-I LA358_12155 PF00475 Imidazoleglycerol-phosphate dehydratase LA358_12155 PF08645 Polynucleotide kinase 3 phosphatase LA358_12160 PF00155 Aminotransferase class I and II LA358_12165 PF00815 Histidinol dehydrogenase LA358_12170 PF01634 ATP phosphoribosyltransferase LA358_12170 PF08029 HisG, C-terminal domain LA358_12180 PF04851 Type III restriction enzyme, res subunit LA358_12180 PF13307 Helicase C-terminal domain LA358_12185 PF00814 Glycoprotease family LA358_12195 PF12697 Alpha/beta hydrolase family LA358_12200 PF13193 AMP-binding enzyme C-terminal domain LA358_12200 PF00501 AMP-binding enzyme LA358_12205 PF00570 HRDC domain LA358_12205 PF01612 3'-5' exonuclease LA358_12210 PF00753 Metallo-beta-lactamase superfamily LA358_12220 PF00586 AIR synthase related protein, N-terminal domain LA358_12220 PF02769 AIR synthase related protein, C-terminal domain LA358_12235 PF10672 S-adenosylmethionine-dependent methyltransferase LA358_12235 PF17785 PUA-like domain LA358_12240 PF02743 Cache domain LA358_12240 PF00672 HAMP domain LA358_12240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_12245 PF00708 Acylphosphatase LA358_12250 PF02798 Glutathione S-transferase, N-terminal domain LA358_12250 PF00043 Glutathione S-transferase, C-terminal domain LA358_12255 PF09334 tRNA synthetases class I (M) LA358_12255 PF01588 Putative tRNA binding domain LA358_12255 PF08264 Anticodon-binding domain of tRNA LA358_12260 PF10609 NUBPL iron-transfer P-loop NTPase LA358_12265 PF00485 Phosphoribulokinase / Uridine kinase family LA358_12270 PF00692 dUTPase LA358_12275 PF01384 Phosphate transporter family LA358_12280 PF12111 Polyribonucleotide phosphorylase C terminal LA358_12280 PF10150 Ribonuclease E/G family LA358_12280 PF00575 S1 RNA binding domain LA358_12285 PF00849 RNA pseudouridylate synthase LA358_12285 PF01479 S4 domain LA358_12290 PF02545 Maf-like protein LA358_12295 PF02620 Large ribosomal RNA subunit accumulation protein YceD LA358_12300 PF01783 Ribosomal L32p protein family LA358_12305 PF02504 Fatty acid synthesis protein LA358_12310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA358_12310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA358_12315 PF00698 Acyl transferase domain LA358_12325 PF00550 Phosphopantetheine attachment site LA358_12330 PF00109 Beta-ketoacyl synthase, N-terminal domain LA358_12330 PF02801 Beta-ketoacyl synthase, C-terminal domain LA358_12335 PF01063 Amino-transferase class IV LA358_12340 PF02618 YceG-like family LA358_12345 PF02223 Thymidylate kinase LA358_12350 PF09115 DNA polymerase III, delta subunit, C terminal LA358_12355 PF01026 TatD related DNase LA358_12360 PF00589 Phage integrase family LA358_12370 PF01189 16S rRNA methyltransferase RsmB/F LA358_12370 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LA358_12370 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LA358_12375 PF02470 MlaD protein LA358_12380 PF04403 Paraquat-inducible protein A LA358_12395 PF00285 Citrate synthase, C-terminal domain LA358_12400 PF03972 MmgE/PrpD family LA358_12415 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LA358_12415 PF06974 Protein of unknown function (DUF1298) LA358_12440 PF00106 short chain dehydrogenase LA358_12450 PF07130 YebG protein LA358_12475 PF05707 Zonular occludens toxin (Zot) LA358_12480 PF10734 Protein of unknown function (DUF2523) LA358_12520 PF13654 AAA domain LA358_12520 PF05362 Lon protease (S16) C-terminal proteolytic domain LA358_12525 PF07977 FabA-like domain LA358_12530 PF04957 Ribosome modulation factor LA358_12535 PF00005 ABC transporter LA358_12535 PF16326 ABC transporter C-terminal domain LA358_12535 PF12848 ABC transporter LA358_12545 PF02926 THUMP domain LA358_12545 PF10672 S-adenosylmethionine-dependent methyltransferase LA358_12545 PF01170 Putative RNA methylase family UPF0020 LA358_12550 PF00444 Ribosomal protein L36 LA358_12555 PF01197 Ribosomal protein L31 LA358_12560 PF01584 CheW-like domain LA358_12560 PF00072 Response regulator receiver domain LA358_12560 PF01627 Hpt domain LA358_12560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_12570 PF01627 Hpt domain LA358_12570 PF09078 CheY binding LA358_12570 PF02895 Signal transducing histidine kinase, homodimeric domain LA358_12570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_12570 PF01584 CheW-like domain LA358_12575 PF12729 Four helix bundle sensory module for signal transduction LA358_12575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_12575 PF00672 HAMP domain LA358_12580 PF01584 CheW-like domain LA358_12585 PF03705 CheR methyltransferase, all-alpha domain LA358_12585 PF01739 CheR methyltransferase, SAM binding domain LA358_12590 PF01339 CheB methylesterase LA358_12590 PF00072 Response regulator receiver domain LA358_12595 PF01590 GAF domain LA358_12595 PF00563 EAL domain LA358_12595 PF00360 Phytochrome region LA358_12595 PF00990 Diguanylate cyclase, GGDEF domain LA358_12600 PF00672 HAMP domain LA358_12600 PF16591 Helical bimodular sensor domain LA358_12600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_12605 PF07126 Cell-division protein ZapC LA358_12610 PF01180 Dihydroorotate dehydrogenase LA358_12615 PF05088 Bacterial NAD-glutamate dehydrogenase LA358_12625 PF01433 Peptidase family M1 domain LA358_12625 PF11940 Domain of unknown function (DUF3458) Ig-like fold LA358_12625 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LA358_12630 PF03572 Peptidase family S41 LA358_12630 PF00595 PDZ domain LA358_12630 PF17804 Tail specific protease N-terminal domain LA358_12630 PF11818 C-terminal domain of tail specific protease (DUF3340) LA358_12635 PF04352 ProQ/FINO family LA358_12635 PF17516 ProQ C-terminal domain LA358_12640 PF13185 GAF domain LA358_12650 PF00115 Cytochrome C and Quinol oxidase polypeptide I LA358_12665 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LA358_12665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LA358_12675 PF00403 Heavy-metal-associated domain LA358_12690 PF00027 Cyclic nucleotide-binding domain LA358_12690 PF13545 Crp-like helix-turn-helix domain LA358_12695 PF00582 Universal stress protein family LA358_12700 PF01171 PP-loop family LA358_12715 PF00005 ABC transporter LA358_12715 PF08402 TOBE domain LA358_12720 PF00528 Binding-protein-dependent transport system inner membrane component LA358_12725 PF00528 Binding-protein-dependent transport system inner membrane component LA358_12730 PF13416 Bacterial extracellular solute-binding protein LA358_12735 PF08019 Phosphoethanolamine transferase EptA/EptB LA358_12735 PF00884 Sulfatase LA358_12740 PF05025 RbsD / FucU transport protein family LA358_12745 PF00005 ABC transporter LA358_12750 PF02653 Branched-chain amino acid transport system / permease component LA358_12755 PF13407 Periplasmic binding protein domain LA358_12760 PF00294 pfkB family carbohydrate kinase LA358_12765 PF00356 Bacterial regulatory proteins, lacI family LA358_12770 PF00990 Diguanylate cyclase, GGDEF domain LA358_12770 PF03707 Bacterial signalling protein N terminal repeat LA358_12770 PF00563 EAL domain LA358_12780 PF02146 Sir2 family LA358_12795 PF09456 RcsC Alpha-Beta-Loop (ABL) LA358_12795 PF00512 His Kinase A (phospho-acceptor) domain LA358_12795 PF00072 Response regulator receiver domain LA358_12795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_12800 PF00216 Bacterial DNA-binding protein LA358_12805 PF03483 B3/4 domain LA358_12805 PF03484 tRNA synthetase B5 domain LA358_12805 PF03147 Ferredoxin-fold anticodon binding domain LA358_12805 PF01588 Putative tRNA binding domain LA358_12805 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LA358_12810 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LA358_12810 PF01409 tRNA synthetases class II core domain (F) LA358_12815 PF00453 Ribosomal protein L20 LA358_12820 PF01632 Ribosomal protein L35 LA358_12825 PF00707 Translation initiation factor IF-3, C-terminal domain LA358_12825 PF05198 Translation initiation factor IF-3, N-terminal domain LA358_12830 PF02824 TGS domain LA358_12830 PF03129 Anticodon binding domain LA358_12830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LA358_12830 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA358_12840 PF04055 Radical SAM superfamily LA358_12850 PF03989 DNA gyrase C-terminal domain, beta-propeller LA358_12850 PF00521 DNA gyrase/topoisomerase IV, subunit A LA358_12860 PF13419 Haloacid dehalogenase-like hydrolase LA358_12865 PF03477 ATP cone domain LA358_12865 PF02867 Ribonucleotide reductase, barrel domain LA358_12865 PF00317 Ribonucleotide reductase, all-alpha domain LA358_12870 PF00268 Ribonucleotide reductase, small chain LA358_12875 PF00111 2Fe-2S iron-sulfur cluster binding domain LA358_12880 PF03562 MltA specific insert domain LA358_12880 PF06725 3D domain LA358_12885 PF06945 Protein of unknown function (DUF1289) LA358_12890 PF02378 Phosphotransferase system, EIIC LA358_12890 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA358_12895 PF00294 pfkB family carbohydrate kinase LA358_12900 PF00381 PTS HPr component phosphorylation site LA358_12900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA358_12905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LA358_12905 PF00356 Bacterial regulatory proteins, lacI family LA358_12910 PF03222 Tryptophan/tyrosine permease family LA358_12915 PF00270 DEAD/DEAH box helicase LA358_12915 PF00271 Helicase conserved C-terminal domain LA358_12920 PF01264 Chorismate synthase LA358_12925 PF05175 Methyltransferase small domain LA358_12930 PF01713 Smr domain LA358_12945 PF04107 Glutamate-cysteine ligase family 2(GCS2) LA358_12955 PF00728 Glycosyl hydrolase family 20, catalytic domain LA358_12955 PF02838 Glycosyl hydrolase family 20, domain 2 LA358_12955 PF07691 PA14 domain LA358_12960 PF08329 Chitinase A, N-terminal domain LA358_12960 PF00704 Glycosyl hydrolases family 18 LA358_12970 PF08274 PhnA Zinc-Ribbon LA358_12970 PF03831 PhnA domain LA358_12975 PF00990 Diguanylate cyclase, GGDEF domain LA358_12975 PF07694 5TMR of 5TMR-LYT LA358_12980 PF13193 AMP-binding enzyme C-terminal domain LA358_12980 PF00501 AMP-binding enzyme LA358_12985 PF03606 C4-dicarboxylate anaerobic carrier LA358_12995 PF05433 Glycine zipper 2TM domain LA358_13000 PF00111 2Fe-2S iron-sulfur cluster binding domain LA358_13000 PF01799 [2Fe-2S] binding domain LA358_13005 PF03450 CO dehydrogenase flavoprotein C-terminal domain LA358_13005 PF00941 FAD binding domain in molybdopterin dehydrogenase LA358_13010 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LA358_13010 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LA358_13015 PF00860 Permease family LA358_13020 PF01979 Amidohydrolase family LA358_13025 PF00860 Permease family LA358_13030 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LA358_13030 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LA358_13030 PF01799 [2Fe-2S] binding domain LA358_13035 PF00941 FAD binding domain in molybdopterin dehydrogenase LA358_13040 PF01979 Amidohydrolase family LA358_13045 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LA358_13045 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_13050 PF12804 MobA-like NTP transferase domain LA358_13060 PF02625 XdhC and CoxI family LA358_13060 PF13478 XdhC Rossmann domain LA358_13065 PF01699 Sodium/calcium exchanger protein LA358_13070 PF00892 EamA-like transporter family LA358_13075 PF00696 Amino acid kinase family LA358_13080 PF01979 Amidohydrolase family LA358_13085 PF07687 Peptidase dimerisation domain LA358_13085 PF01546 Peptidase family M20/M25/M40 LA358_13090 PF00291 Pyridoxal-phosphate dependent enzyme LA358_13095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA358_13095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA358_13130 PF00583 Acetyltransferase (GNAT) family LA358_13135 PF03330 Lytic transglycolase LA358_13135 PF05036 Sporulation related domain LA358_13140 PF16330 MukB hinge domain LA358_13140 PF04310 MukB N-terminal LA358_13145 PF04288 MukE-like family LA358_13150 PF03882 MukF winged-helix domain LA358_13150 PF17193 MukF C-terminal domain LA358_13150 PF17192 MukF middle domain LA358_13155 PF13847 Methyltransferase domain LA358_13160 PF02698 DUF218 domain LA358_13165 PF00121 Triosephosphate isomerase LA358_13170 PF00365 Phosphofructokinase LA358_13180 PF00375 Sodium:dicarboxylate symporter family LA358_13185 PF06865 Pyrimidine/purine nucleoside phosphorylase LA358_13190 PF03313 Serine dehydratase alpha chain LA358_13190 PF03315 Serine dehydratase beta chain LA358_13195 PF03315 Serine dehydratase beta chain LA358_13195 PF03313 Serine dehydratase alpha chain LA358_13200 PF05166 YcgL domain LA358_13205 PF03775 Septum formation inhibitor MinC, C-terminal domain LA358_13205 PF05209 Septum formation inhibitor MinC, N-terminal domain LA358_13210 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LA358_13215 PF03776 Septum formation topological specificity factor MinE LA358_13220 PF04269 Protein of unknown function, DUF440 LA358_13225 PF00912 Transglycosylase LA358_13230 PF04269 Protein of unknown function, DUF440 LA358_13240 PF17783 CvfB-like winged helix domain LA358_13240 PF13509 S1 domain LA358_13265 PF02525 Flavodoxin-like fold LA358_13270 PF00892 EamA-like transporter family LA358_13275 PF02222 ATP-grasp domain LA358_13275 PF01370 NAD dependent epimerase/dehydratase family LA358_13280 PF13419 Haloacid dehalogenase-like hydrolase LA358_13290 PF00677 Lumazine binding domain LA358_13295 PF06786 Uncharacterised protein family (UPF0253) LA358_13300 PF01554 MatE LA358_13330 PF02954 Bacterial regulatory protein, Fis family LA358_13330 PF13188 PAS domain LA358_13330 PF00158 Sigma-54 interaction domain LA358_13340 PF07152 YaeQ protein LA358_13350 PF07840 FadR C-terminal domain LA358_13350 PF00392 Bacterial regulatory proteins, gntR family LA358_13355 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LA358_13360 PF02600 Disulfide bond formation protein DsbB LA358_13365 PF09335 SNARE associated Golgi protein LA358_13375 PF12344 Ultra-violet resistance protein B LA358_13375 PF17757 UvrB interaction domain LA358_13375 PF04851 Type III restriction enzyme, res subunit LA358_13375 PF02151 UvrB/uvrC motif LA358_13375 PF00271 Helicase conserved C-terminal domain LA358_13390 PF06826 Predicted Permease Membrane Region LA358_13390 PF02080 TrkA-C domain LA358_13395 PF00109 Beta-ketoacyl synthase, N-terminal domain LA358_13395 PF02801 Beta-ketoacyl synthase, C-terminal domain LA358_13400 PF01266 FAD dependent oxidoreductase LA358_13400 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LA358_13415 PF03606 C4-dicarboxylate anaerobic carrier LA358_13430 PF01863 Protein of unknown function DUF45 LA358_13445 PF00136 DNA polymerase family B LA358_13445 PF03104 DNA polymerase family B, exonuclease domain LA358_13460 PF03279 Bacterial lipid A biosynthesis acyltransferase LA358_13465 PF03279 Bacterial lipid A biosynthesis acyltransferase LA358_13475 PF03466 LysR substrate binding domain LA358_13475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_13480 PF01261 Xylose isomerase-like TIM barrel LA358_13485 PF02575 YbaB/EbfC DNA-binding family LA358_13490 PF12169 DNA polymerase III subunits gamma and tau domain III LA358_13490 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LA358_13490 PF12170 DNA polymerase III tau subunit V interacting with alpha LA358_13495 PF00156 Phosphoribosyl transferase domain LA358_13500 PF04304 Protein of unknown function (DUF454) LA358_13505 PF01207 Dihydrouridine synthase (Dus) LA358_13515 PF13419 Haloacid dehalogenase-like hydrolase LA358_13520 PF00883 Cytosol aminopeptidase family, catalytic domain LA358_13520 PF02789 Cytosol aminopeptidase family, N-terminal domain LA358_13560 PF00128 Alpha amylase, catalytic domain LA358_13560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA358_13570 PF11398 Protein of unknown function (DUF2813) LA358_13575 PF14525 AraC-binding-like domain LA358_13575 PF12833 Helix-turn-helix domain LA358_13585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_13585 PF03466 LysR substrate binding domain LA358_13590 PF01925 Sulfite exporter TauE/SafE LA358_13595 PF03942 DTW domain LA358_13600 PF01047 MarR family LA358_13600 PF00480 ROK family LA358_13605 PF17200 Single Cache domain 2 LA358_13605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_13605 PF00672 HAMP domain LA358_13610 PF02810 SEC-C motif LA358_13615 PF04324 BFD-like [2Fe-2S] binding domain LA358_13615 PF01266 FAD dependent oxidoreductase LA358_13620 PF00890 FAD binding domain LA358_13625 PF02754 Cysteine-rich domain LA358_13625 PF13183 4Fe-4S dicluster domain LA358_13635 PF02335 Cytochrome c552 LA358_13640 PF13435 Cytochrome c554 and c-prime LA358_13640 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LA358_13645 PF13247 4Fe-4S dicluster domain LA358_13645 PF00037 4Fe-4S binding domain LA358_13650 PF03916 Polysulphide reductase, NrfD LA358_13655 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LA358_13655 PF01578 Cytochrome C assembly protein LA358_13660 PF08534 Redoxin LA358_13665 PF03918 Cytochrome C biogenesis protein LA358_13675 PF00202 Aminotransferase class-III LA358_13680 PF00266 Aminotransferase class-V LA358_13685 PF07702 UTRA domain LA358_13685 PF00392 Bacterial regulatory proteins, gntR family LA358_13695 PF00005 ABC transporter LA358_13700 PF00528 Binding-protein-dependent transport system inner membrane component LA358_13705 PF01266 FAD dependent oxidoreductase LA358_13715 PF01112 Asparaginase LA358_13720 PF00892 EamA-like transporter family LA358_13730 PF02629 CoA binding domain LA358_13730 PF00549 CoA-ligase LA358_13735 PF08442 ATP-grasp domain LA358_13735 PF00549 CoA-ligase LA358_13740 PF00364 Biotin-requiring enzyme LA358_13740 PF02817 e3 binding domain LA358_13740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LA358_13745 PF16078 2-oxoglutarate dehydrogenase N-terminus LA358_13745 PF00676 Dehydrogenase E1 component LA358_13745 PF16870 2-oxoglutarate dehydrogenase C-terminal LA358_13745 PF02779 Transketolase, pyrimidine binding domain LA358_13750 PF13085 2Fe-2S iron-sulfur cluster binding domain LA358_13755 PF02910 Fumarate reductase flavoprotein C-term LA358_13755 PF00890 FAD binding domain LA358_13760 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LA358_13765 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LA358_13775 PF00285 Citrate synthase, C-terminal domain LA358_13790 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LA358_13800 PF01928 CYTH domain LA358_13815 PF08543 Phosphomethylpyrimidine kinase LA358_13840 PF03466 LysR substrate binding domain LA358_13840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_13845 PF13533 Biotin-lipoyl like LA358_13850 PF00873 AcrB/AcrD/AcrF family LA358_13855 PF02321 Outer membrane efflux protein LA358_13860 PF00664 ABC transporter transmembrane region LA358_13860 PF00005 ABC transporter LA358_13865 PF00664 ABC transporter transmembrane region LA358_13865 PF00005 ABC transporter LA358_13870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_13870 PF00512 His Kinase A (phospho-acceptor) domain LA358_13870 PF00672 HAMP domain LA358_13870 PF01627 Hpt domain LA358_13870 PF00072 Response regulator receiver domain LA358_13870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LA358_13875 PF00085 Thioredoxin LA358_13880 PF00939 Sodium:sulfate symporter transmembrane region LA358_13885 PF00343 Carbohydrate phosphorylase LA358_13900 PF03692 Putative zinc- or iron-chelating domain LA358_13905 PF02901 Pyruvate formate lyase-like LA358_13905 PF01228 Glycine radical LA358_13910 PF01226 Formate/nitrite transporter LA358_13915 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LA358_13915 PF18381 YcaO cyclodehydratase C-terminal domain LA358_13920 PF00232 Glycosyl hydrolase family 1 LA358_13925 PF03466 LysR substrate binding domain LA358_13925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_13930 PF08267 Cobalamin-independent synthase, N-terminal domain LA358_13930 PF01717 Cobalamin-independent synthase, Catalytic domain LA358_13935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_13935 PF03466 LysR substrate binding domain LA358_13945 PF07715 TonB-dependent Receptor Plug Domain LA358_13945 PF00593 TonB dependent receptor LA358_13950 PF06445 GyrI-like small molecule binding domain LA358_13950 PF12833 Helix-turn-helix domain LA358_13965 PF00881 Nitroreductase family LA358_13970 PF03806 AbgT putative transporter family LA358_13975 PF13188 PAS domain LA358_13975 PF03707 Bacterial signalling protein N terminal repeat LA358_13975 PF00990 Diguanylate cyclase, GGDEF domain LA358_13975 PF00563 EAL domain LA358_13980 PF03466 LysR substrate binding domain LA358_13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_13985 PF00072 Response regulator receiver domain LA358_13995 PF01212 Beta-eliminating lyase LA358_14010 PF00248 Aldo/keto reductase family LA358_14015 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LA358_14025 PF00005 ABC transporter LA358_14030 PF00528 Binding-protein-dependent transport system inner membrane component LA358_14035 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_14040 PF00528 Binding-protein-dependent transport system inner membrane component LA358_14045 PF03411 Penicillin-insensitive murein endopeptidase LA358_14055 PF04536 TPM domain LA358_14075 PF00589 Phage integrase family LA358_14075 PF13495 Phage integrase, N-terminal SAM-like domain LA358_14110 PF01618 MotA/TolQ/ExbB proton channel family LA358_14115 PF00691 OmpA family LA358_14115 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA358_14120 PF07715 TonB-dependent Receptor Plug Domain LA358_14120 PF00593 TonB dependent receptor LA358_14125 PF00326 Prolyl oligopeptidase family LA358_14125 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LA358_14145 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LA358_14150 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LA358_14155 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LA358_14155 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LA358_14165 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LA358_14165 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LA358_14170 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA358_14170 PF00384 Molybdopterin oxidoreductase LA358_14170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA358_14175 PF00146 NADH dehydrogenase LA358_14180 PF12838 4Fe-4S dicluster domain LA358_14185 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LA358_14190 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LA358_14195 PF00361 Proton-conducting membrane transporter LA358_14195 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LA358_14200 PF00361 Proton-conducting membrane transporter LA358_14205 PF00361 Proton-conducting membrane transporter LA358_14215 PF01966 HD domain LA358_14220 PF01966 HD domain LA358_14225 PF00271 Helicase conserved C-terminal domain LA358_14225 PF00270 DEAD/DEAH box helicase LA358_14225 PF03880 DbpA RNA binding domain LA358_14230 PF03061 Thioesterase superfamily LA358_14240 PF13183 4Fe-4S dicluster domain LA358_14240 PF01565 FAD binding domain LA358_14240 PF02913 FAD linked oxidases, C-terminal domain LA358_14250 PF03741 Integral membrane protein TerC family LA358_14250 PF03471 Transporter associated domain LA358_14255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA358_14260 PF00962 Adenosine/AMP deaminase LA358_14265 PF13344 Haloacid dehalogenase-like hydrolase LA358_14270 PF00999 Sodium/hydrogen exchanger family LA358_14270 PF02254 TrkA-N domain LA358_14280 PF00733 Asparagine synthase LA358_14280 PF13537 Glutamine amidotransferase domain LA358_14285 PF03577 Peptidase family C69 LA358_14290 PF14497 Glutathione S-transferase, C-terminal domain LA358_14290 PF02798 Glutathione S-transferase, N-terminal domain LA358_14300 PF04209 homogentisate 1,2-dioxygenase LA358_14305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA358_14315 PF00849 RNA pseudouridylate synthase LA358_14320 PF00528 Binding-protein-dependent transport system inner membrane component LA358_14325 PF00528 Binding-protein-dependent transport system inner membrane component LA358_14330 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_14335 PF00005 ABC transporter LA358_14340 PF03956 Lysine exporter LysO LA358_14345 PF04336 Acyl carrier protein phosphodiesterase LA358_14355 PF03960 ArsC family LA358_14360 PF00578 AhpC/TSA family LA358_14365 PF13181 Tetratricopeptide repeat LA358_14365 PF01435 Peptidase family M48 LA358_14370 PF01206 Sulfurtransferase TusA LA358_14375 PF01594 AI-2E family transporter LA358_14385 PF00561 alpha/beta hydrolase fold LA358_14390 PF03976 Polyphosphate kinase 2 (PPK2) LA358_14400 PF00497 Bacterial extracellular solute-binding proteins, family 3 LA358_14405 PF00155 Aminotransferase class I and II LA358_14410 PF00005 ABC transporter LA358_14410 PF08402 TOBE domain LA358_14415 PF00528 Binding-protein-dependent transport system inner membrane component LA358_14420 PF00528 Binding-protein-dependent transport system inner membrane component LA358_14420 PF14785 Maltose transport system permease protein MalF P2 domain LA358_14425 PF01547 Bacterial extracellular solute-binding protein LA358_14430 PF04245 37-kD nucleoid-associated bacterial protein LA358_14435 PF07208 Protein of unknown function (DUF1414) LA358_14440 PF11893 Domain of unknown function (DUF3413) LA358_14440 PF00884 Sulfatase LA358_14445 PF03180 NLPA lipoprotein LA358_14460 PF01483 Proprotein convertase P-domain LA358_14460 PF00082 Subtilase family LA358_14470 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LA358_14470 PF00391 PEP-utilising enzyme, mobile domain LA358_14470 PF02896 PEP-utilising enzyme, TIM barrel domain LA358_14475 PF03618 Kinase/pyrophosphorylase LA358_14485 PF00324 Amino acid permease LA358_14490 PF07690 Major Facilitator Superfamily LA358_14495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_14495 PF00989 PAS fold LA358_14495 PF00512 His Kinase A (phospho-acceptor) domain LA358_14505 PF08241 Methyltransferase domain LA358_14510 PF00884 Sulfatase LA358_14515 PF04055 Radical SAM superfamily LA358_14515 PF13186 Iron-sulfur cluster-binding domain LA358_14520 PF12729 Four helix bundle sensory module for signal transduction LA358_14520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_14520 PF00672 HAMP domain LA358_14525 PF02347 Glycine cleavage system P-protein LA358_14530 PF01597 Glycine cleavage H-protein LA358_14535 PF08669 Glycine cleavage T-protein C-terminal barrel domain LA358_14535 PF01571 Aminomethyltransferase folate-binding domain LA358_14540 PF01494 FAD binding domain LA358_14545 PF01494 FAD binding domain LA358_14550 PF03695 Uncharacterised protein family (UPF0149) LA358_14555 PF05164 Cell division protein ZapA LA358_14565 PF08521 Two-component sensor kinase N-terminal LA358_14565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_14565 PF00512 His Kinase A (phospho-acceptor) domain LA358_14570 PF00072 Response regulator receiver domain LA358_14570 PF00486 Transcriptional regulatory protein, C terminal LA358_14585 PF01970 Tripartite tricarboxylate transporter TctA family LA358_14635 PF01066 CDP-alcohol phosphatidyltransferase LA358_14640 PF08459 UvrC Helix-hairpin-helix N-terminal LA358_14640 PF01541 GIY-YIG catalytic domain LA358_14640 PF02151 UvrB/uvrC motif LA358_14645 PF00196 Bacterial regulatory proteins, luxR family LA358_14645 PF00072 Response regulator receiver domain LA358_14650 PF02348 Cytidylyltransferase LA358_14655 PF03966 Trm112p-like protein LA358_14660 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LA358_14665 PF00664 ABC transporter transmembrane region LA358_14665 PF00005 ABC transporter LA358_14670 PF03772 Competence protein LA358_14670 PF00753 Metallo-beta-lactamase superfamily LA358_14685 PF05872 Bacterial protein of unknown function (DUF853) LA358_14690 PF00155 Aminotransferase class I and II LA358_14700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_14700 PF03466 LysR substrate binding domain LA358_14705 PF04219 Protein of unknown function, DUF LA358_14710 PF03974 Ecotin LA358_14715 PF03009 Glycerophosphoryl diester phosphodiesterase family LA358_14720 PF01266 FAD dependent oxidoreductase LA358_14720 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LA358_14725 PF00455 DeoR C terminal sensor domain LA358_14725 PF08220 DeoR-like helix-turn-helix domain LA358_14730 PF07690 Major Facilitator Superfamily LA358_14735 PF00230 Major intrinsic protein LA358_14740 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LA358_14740 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LA358_14745 PF13737 Transposase DDE domain LA358_14750 PF03466 LysR substrate binding domain LA358_14750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_14785 PF00248 Aldo/keto reductase family LA358_14795 PF07690 Major Facilitator Superfamily LA358_14805 PF04391 Protein of unknown function (DUF533) LA358_14810 PF00892 EamA-like transporter family LA358_14820 PF03061 Thioesterase superfamily LA358_14825 PF10689 Protein of unknown function (DUF2496) LA358_14830 PF01479 S4 domain LA358_14830 PF00849 RNA pseudouridylate synthase LA358_14835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LA358_14835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LA358_14840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA358_14855 PF00145 C-5 cytosine-specific DNA methylase LA358_14855 PF01381 Helix-turn-helix LA358_14870 PF02508 Rnf-Nqr subunit, membrane protein LA358_14875 PF04060 Putative Fe-S cluster LA358_14880 PF10531 SLBB domain LA358_14880 PF12838 4Fe-4S dicluster domain LA358_14880 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LA358_14880 PF13375 RnfC Barrel sandwich hybrid domain LA358_14885 PF03116 NQR2, RnfD, RnfE family LA358_14890 PF04205 FMN-binding domain LA358_14895 PF02508 Rnf-Nqr subunit, membrane protein LA358_14900 PF00730 HhH-GPD superfamily base excision DNA repair protein LA358_14900 PF00633 Helix-hairpin-helix motif LA358_14900 PF10576 Iron-sulfur binding domain of endonuclease III LA358_14905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA358_14910 PF18393 MotY N-terminal domain LA358_14910 PF00691 OmpA family LA358_14915 PF12729 Four helix bundle sensory module for signal transduction LA358_14915 PF00672 HAMP domain LA358_14915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_14930 PF08378 Nuclease-related domain LA358_14935 PF03575 Peptidase family S51 LA358_14940 PF07759 Protein of unknown function (DUF1615) LA358_14950 PF08502 LeuA allosteric (dimerisation) domain LA358_14950 PF00682 HMGL-like LA358_14955 PF02142 MGS-like domain LA358_14955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA358_14955 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LA358_14960 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LA358_14960 PF00117 Glutamine amidotransferase class-I LA358_14965 PF05173 Dihydrodipicolinate reductase, C-terminus LA358_14965 PF01113 Dihydrodipicolinate reductase, N-terminus LA358_14975 PF01812 5-formyltetrahydrofolate cyclo-ligase family LA358_14980 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LA358_14985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA358_14985 PF01842 ACT domain LA358_14985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA358_14990 PF01219 Prokaryotic diacylglycerol kinase LA358_14995 PF00793 DAHP synthetase I family LA358_15000 PF00005 ABC transporter LA358_15005 PF01032 FecCD transport family LA358_15020 PF00437 Type II/IV secretion system protein LA358_15030 PF00842 Alanine racemase, C-terminal domain LA358_15030 PF01168 Alanine racemase, N-terminal domain LA358_15035 PF03741 Integral membrane protein TerC family LA358_15040 PF00005 ABC transporter LA358_15040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA358_15045 PF00005 ABC transporter LA358_15045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA358_15050 PF12911 N-terminal TM domain of oligopeptide transport permease C LA358_15050 PF00528 Binding-protein-dependent transport system inner membrane component LA358_15055 PF00528 Binding-protein-dependent transport system inner membrane component LA358_15060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_15065 PF01914 MarC family integral membrane protein LA358_15070 PF00465 Iron-containing alcohol dehydrogenase LA358_15070 PF00171 Aldehyde dehydrogenase family LA358_15075 PF01709 Transcriptional regulator LA358_15080 PF00152 tRNA synthetases class II (D, K and N) LA358_15080 PF01336 OB-fold nucleic acid binding domain LA358_15080 PF02938 GAD domain LA358_15090 PF01904 Protein of unknown function DUF72 LA358_15095 PF13649 Methyltransferase domain LA358_15100 PF08003 Protein of unknown function (DUF1698) LA358_15120 PF00578 AhpC/TSA family LA358_15120 PF10417 C-terminal domain of 1-Cys peroxiredoxin LA358_15125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_15125 PF03466 LysR substrate binding domain LA358_15130 PF00877 NlpC/P60 family LA358_15145 PF00180 Isocitrate/isopropylmalate dehydrogenase LA358_15150 PF12833 Helix-turn-helix domain LA358_15155 PF01238 Phosphomannose isomerase type I LA358_15165 PF07971 Glycosyl hydrolase family 92 LA358_15165 PF17678 Glycosyl hydrolase family 92 N-terminal domain LA358_15200 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LA358_15205 PF00005 ABC transporter LA358_15210 PF00528 Binding-protein-dependent transport system inner membrane component LA358_15215 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LA358_15220 PF05656 Protein of unknown function (DUF805) LA358_15235 PF01156 Inosine-uridine preferring nucleoside hydrolase LA358_15245 PF00171 Aldehyde dehydrogenase family LA358_15250 PF08359 YsiA-like protein, C-terminal region LA358_15250 PF00440 Bacterial regulatory proteins, tetR family LA358_15260 PF00465 Iron-containing alcohol dehydrogenase LA358_15280 PF01554 MatE LA358_15290 PF04325 Protein of unknown function (DUF465) LA358_15300 PF00563 EAL domain LA358_15300 PF00990 Diguanylate cyclase, GGDEF domain LA358_15300 PF08448 PAS fold LA358_15305 PF04337 Protein of unknown function, DUF480 LA358_15315 PF00127 Copper binding proteins, plastocyanin/azurin family LA358_15320 PF02424 ApbE family LA358_15335 PF03372 Endonuclease/Exonuclease/phosphatase family LA358_15340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_15345 PF00873 AcrB/AcrD/AcrF family LA358_15355 PF00529 HlyD membrane-fusion protein of T1SS LA358_15355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_15360 PF00873 AcrB/AcrD/AcrF family LA358_15375 PF00005 ABC transporter LA358_15380 PF01032 FecCD transport family LA358_15385 PF01032 FecCD transport family LA358_15390 PF00593 TonB dependent receptor LA358_15390 PF07715 TonB-dependent Receptor Plug Domain LA358_15395 PF08021 Siderophore-interacting FAD-binding domain LA358_15395 PF04954 Siderophore-interacting protein LA358_15400 PF11849 Domain of unknown function (DUF3369) LA358_15410 PF00929 Exonuclease LA358_15415 PF00075 RNase H LA358_15420 PF08241 Methyltransferase domain LA358_15425 PF16123 Hydroxyacylglutathione hydrolase C-terminus LA358_15425 PF00753 Metallo-beta-lactamase superfamily LA358_15430 PF01476 LysM domain LA358_15430 PF01464 Transglycosylase SLT domain LA358_15435 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LA358_15445 PF05472 DNA replication terminus site-binding protein (Ter protein) LA358_15450 PF00271 Helicase conserved C-terminal domain LA358_15450 PF00176 SNF2 family N-terminal domain LA358_15450 PF04434 SWIM zinc finger LA358_15460 PF17969 L,D-transpeptidase C-terminal domain LA358_15460 PF01476 LysM domain LA358_15460 PF03734 L,D-transpeptidase catalytic domain LA358_15470 PF00939 Sodium:sulfate symporter transmembrane region LA358_15475 PF01575 MaoC like domain LA358_15480 PF05971 RNA methyltransferase LA358_15485 PF00877 NlpC/P60 family LA358_15490 PF01648 4'-phosphopantetheinyl transferase superfamily LA358_15495 PF00085 Thioredoxin LA358_15505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LA358_15510 PF01842 ACT domain LA358_15510 PF00551 Formyl transferase LA358_15520 PF13091 PLD-like domain LA358_15520 PF13396 Phospholipase_D-nuclease N-terminal LA358_15525 PF07273 Protein of unknown function (DUF1439) LA358_15535 PF01464 Transglycosylase SLT domain LA358_15535 PF01551 Peptidase family M23 LA358_15535 PF10145 Phage-related minor tail protein LA358_15540 PF00230 Major intrinsic protein LA358_15550 PF00155 Aminotransferase class I and II LA358_15555 PF12795 Mechanosensitive ion channel porin domain LA358_15555 PF12794 Mechanosensitive ion channel inner membrane domain 1 LA358_15555 PF00924 Mechanosensitive ion channel LA358_15560 PF07055 Enoyl reductase FAD binding domain LA358_15560 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LA358_15560 PF12241 Trans-2-enoyl-CoA reductase catalytic region LA358_15570 PF00512 His Kinase A (phospho-acceptor) domain LA358_15570 PF00672 HAMP domain LA358_15570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_15575 PF00486 Transcriptional regulatory protein, C terminal LA358_15575 PF00072 Response regulator receiver domain LA358_15585 PF03313 Serine dehydratase alpha chain LA358_15590 PF01042 Endoribonuclease L-PSP LA358_15610 PF02706 Chain length determinant protein LA358_15615 PF17810 Arginine decarboxylase helical bundle domain LA358_15615 PF17944 Arginine decarboxylase C-terminal helical extension LA358_15615 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LA358_15620 PF07687 Peptidase dimerisation domain LA358_15620 PF01546 Peptidase family M20/M25/M40 LA358_15635 PF05221 S-adenosyl-L-homocysteine hydrolase LA358_15635 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LA358_15645 PF04264 YceI-like domain LA358_15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_15650 PF03466 LysR substrate binding domain LA358_15660 PF01268 Formate--tetrahydrofolate ligase LA358_15665 PF17200 Single Cache domain 2 LA358_15665 PF00672 HAMP domain LA358_15665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_15670 PF01227 GTP cyclohydrolase I LA358_15675 PF00994 Probable molybdopterin binding domain LA358_15675 PF03454 MoeA C-terminal region (domain IV) LA358_15675 PF03453 MoeA N-terminal region (domain I and II) LA358_15680 PF00899 ThiF family LA358_15685 PF06291 Bor protein LA358_15690 PF06291 Bor protein LA358_15700 PF06406 StbA protein LA358_15705 PF08386 TAP-like protein LA358_15705 PF00561 alpha/beta hydrolase fold LA358_15710 PF03459 TOBE domain LA358_15710 PF00005 ABC transporter LA358_15715 PF00528 Binding-protein-dependent transport system inner membrane component LA358_15725 PF02391 MoaE protein LA358_15730 PF02597 ThiS family LA358_15735 PF01967 MoaC family LA358_15740 PF00994 Probable molybdopterin binding domain LA358_15745 PF03264 NapC/NirT cytochrome c family, N-terminal region LA358_15750 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LA358_15755 PF12837 4Fe-4S binding domain LA358_15755 PF12801 4Fe-4S binding domain LA358_15760 PF12800 4Fe-4S binding domain LA358_15760 PF12838 4Fe-4S dicluster domain LA358_15765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA358_15765 PF00384 Molybdopterin oxidoreductase LA358_15765 PF01568 Molydopterin dinucleotide binding domain LA358_15765 PF10518 TAT (twin-arginine translocation) pathway signal sequence LA358_15775 PF12838 4Fe-4S dicluster domain LA358_15775 PF13187 4Fe-4S dicluster domain LA358_15780 PF06463 Molybdenum Cofactor Synthesis C LA358_15780 PF04055 Radical SAM superfamily LA358_15785 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LA358_15785 PF07730 Histidine kinase LA358_15785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_15785 PF00672 HAMP domain LA358_15790 PF00196 Bacterial regulatory proteins, luxR family LA358_15790 PF00072 Response regulator receiver domain LA358_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_15800 PF00512 His Kinase A (phospho-acceptor) domain LA358_15800 PF09456 RcsC Alpha-Beta-Loop (ABL) LA358_15800 PF00072 Response regulator receiver domain LA358_15810 PF01933 Uncharacterised protein family UPF0052 LA358_15820 PF13230 Glutamine amidotransferases class-II LA358_15825 PF13580 SIS domain LA358_15830 PF09317 Domain of unknown function (DUF1974) LA358_15830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA358_15830 PF02770 Acyl-CoA dehydrogenase, middle domain LA358_15830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA358_15835 PF07687 Peptidase dimerisation domain LA358_15835 PF01546 Peptidase family M20/M25/M40 LA358_15840 PF03658 RnfH family Ubiquitin LA358_15845 PF03364 Polyketide cyclase / dehydrase and lipid transport LA358_15850 PF01668 SmpB protein LA358_15860 PF00455 DeoR C terminal sensor domain LA358_15860 PF08220 DeoR-like helix-turn-helix domain LA358_15865 PF07690 Major Facilitator Superfamily LA358_15870 PF07882 L-fucose isomerase, second N-terminal domain LA358_15870 PF07881 L-fucose isomerase, first N-terminal domain LA358_15870 PF02952 L-fucose isomerase, C-terminal domain LA358_15875 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LA358_15875 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LA358_15880 PF00596 Class II Aldolase and Adducin N-terminal domain LA358_15885 PF05025 RbsD / FucU transport protein family LA358_15890 PF00465 Iron-containing alcohol dehydrogenase LA358_15895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LA358_15895 PF12838 4Fe-4S dicluster domain LA358_15895 PF01568 Molydopterin dinucleotide binding domain LA358_15895 PF00384 Molybdopterin oxidoreductase LA358_15895 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA358_15905 PF13580 SIS domain LA358_15910 PF13580 SIS domain LA358_15915 PF03613 PTS system mannose/fructose/sorbose family IID component LA358_15920 PF03609 PTS system sorbose-specific iic component LA358_15925 PF03830 PTS system sorbose subfamily IIB component LA358_15930 PF01116 Fructose-bisphosphate aldolase class-II LA358_15935 PF01979 Amidohydrolase family LA358_15940 PF03610 PTS system fructose IIA component LA358_15945 PF01380 SIS domain LA358_15950 PF08013 Tagatose 6 phosphate kinase LA358_15955 PF00455 DeoR C terminal sensor domain LA358_15955 PF08220 DeoR-like helix-turn-helix domain LA358_15960 PF01263 Aldose 1-epimerase LA358_15965 PF00083 Sugar (and other) transporter LA358_15970 PF17128 Domain of unknown function (DUF5107) LA358_15970 PF13181 Tetratricopeptide repeat LA358_15975 PF00480 ROK family LA358_15990 PF00440 Bacterial regulatory proteins, tetR family LA358_15995 PF09317 Domain of unknown function (DUF1974) LA358_15995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA358_15995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA358_15995 PF02770 Acyl-CoA dehydrogenase, middle domain LA358_16000 PF02075 Crossover junction endodeoxyribonuclease RuvC LA358_16005 PF00155 Aminotransferase class I and II LA358_16010 PF00367 phosphotransferase system, EIIB LA358_16010 PF02378 Phosphotransferase system, EIIC LA358_16015 PF00356 Bacterial regulatory proteins, lacI family LA358_16015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LA358_16020 PF00440 Bacterial regulatory proteins, tetR family LA358_16020 PF16925 Tetracyclin repressor-like, C-terminal domain LA358_16025 PF16884 N-terminal domain of oxidoreductase LA358_16025 PF00107 Zinc-binding dehydrogenase LA358_16030 PF02028 BCCT, betaine/carnitine/choline family transporter LA358_16055 PF00291 Pyridoxal-phosphate dependent enzyme LA358_16055 PF14821 Threonine synthase N terminus LA358_16060 PF08544 GHMP kinases C terminal LA358_16060 PF00288 GHMP kinases N terminal domain LA358_16065 PF03447 Homoserine dehydrogenase, NAD binding domain LA358_16065 PF00742 Homoserine dehydrogenase LA358_16065 PF01842 ACT domain LA358_16065 PF00696 Amino acid kinase family LA358_16065 PF13840 ACT domain LA358_16070 PF00588 SpoU rRNA Methylase family LA358_16075 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LA358_16090 PF00849 RNA pseudouridylate synthase LA358_16090 PF01479 S4 domain LA358_16095 PF04079 Segregation and condensation complex subunit ScpB LA358_16100 PF02616 Segregation and condensation protein ScpA LA358_16105 PF01300 Telomere recombination LA358_16110 PF02811 PHP domain LA358_16115 PF04715 Anthranilate synthase component I, N terminal region LA358_16115 PF00425 chorismate binding enzyme LA358_16120 PF00117 Glutamine amidotransferase class-I LA358_16120 PF02885 Glycosyl transferase family, helical bundle domain LA358_16120 PF00591 Glycosyl transferase family, a/b domain LA358_16125 PF00591 Glycosyl transferase family, a/b domain LA358_16125 PF02885 Glycosyl transferase family, helical bundle domain LA358_16130 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LA358_16130 PF00218 Indole-3-glycerol phosphate synthase LA358_16135 PF00291 Pyridoxal-phosphate dependent enzyme LA358_16140 PF00290 Tryptophan synthase alpha chain LA358_16165 PF04307 LexA-binding, inner membrane-associated putative hydrolase LA358_16190 PF00005 ABC transporter LA358_16195 PF02653 Branched-chain amino acid transport system / permease component LA358_16200 PF02653 Branched-chain amino acid transport system / permease component LA358_16205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LA358_16205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LA358_16210 PF07662 Na+ dependent nucleoside transporter C-terminus LA358_16210 PF07670 Nucleoside recognition LA358_16210 PF01773 Na+ dependent nucleoside transporter N-terminus LA358_16215 PF03960 ArsC family LA358_16220 PF01758 Sodium Bile acid symporter family LA358_16225 PF02374 Anion-transporting ATPase LA358_16230 PF06953 Arsenical resistance operon trans-acting repressor ArsD LA358_16235 PF01022 Bacterial regulatory protein, arsR family LA358_16250 PF03737 Aldolase/RraA LA358_16260 PF00072 Response regulator receiver domain LA358_16260 PF00486 Transcriptional regulatory protein, C terminal LA358_16275 PF00664 ABC transporter transmembrane region LA358_16275 PF00005 ABC transporter LA358_16280 PF00664 ABC transporter transmembrane region LA358_16280 PF00005 ABC transporter LA358_16300 PF01980 tRNA-methyltransferase O LA358_16300 PF18389 TrmO C-terminal domain LA358_16305 PF01292 Prokaryotic cytochrome b561 LA358_16315 PF00072 Response regulator receiver domain LA358_16315 PF00486 Transcriptional regulatory protein, C terminal LA358_16320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_16325 PF03350 Uncharacterized protein family, UPF0114 LA358_16345 PF02954 Bacterial regulatory protein, Fis family LA358_16345 PF00072 Response regulator receiver domain LA358_16345 PF00158 Sigma-54 interaction domain LA358_16375 PF01266 FAD dependent oxidoreductase LA358_16380 PF07883 Cupin domain LA358_16380 PF01381 Helix-turn-helix LA358_16385 PF00171 Aldehyde dehydrogenase family LA358_16390 PF00202 Aminotransferase class-III LA358_16395 PF00324 Amino acid permease LA358_16400 PF13520 Amino acid permease LA358_16415 PF02690 Na+/Pi-cotransporter LA358_16420 PF02690 Na+/Pi-cotransporter LA358_16425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA358_16425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LA358_16435 PF04381 Putative exonuclease, RdgC LA358_16445 PF00149 Calcineurin-like phosphoesterase LA358_16445 PF12320 Type 5 capsule protein repressor C-terminal domain LA358_16455 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LA358_16465 PF00224 Pyruvate kinase, barrel domain LA358_16465 PF02887 Pyruvate kinase, alpha/beta domain LA358_16470 PF12794 Mechanosensitive ion channel inner membrane domain 1 LA358_16470 PF00924 Mechanosensitive ion channel LA358_16470 PF12795 Mechanosensitive ion channel porin domain LA358_16475 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LA358_16480 PF05524 PEP-utilising enzyme, N-terminal LA358_16480 PF00391 PEP-utilising enzyme, mobile domain LA358_16480 PF02896 PEP-utilising enzyme, TIM barrel domain LA358_16485 PF00381 PTS HPr component phosphorylation site LA358_16490 PF00291 Pyridoxal-phosphate dependent enzyme LA358_16495 PF01434 Peptidase family M41 LA358_16495 PF17862 AAA+ lid domain LA358_16495 PF00004 ATPase family associated with various cellular activities (AAA) LA358_16505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA358_16505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA358_16510 PF00672 HAMP domain LA358_16510 PF01966 HD domain LA358_16515 PF13401 AAA domain LA358_16515 PF01471 Putative peptidoglycan binding domain LA358_16520 PF16537 Type II secretion system protein B LA358_16525 PF11356 Type II secretion system protein C LA358_16530 PF00263 Bacterial type II and III secretion system protein LA358_16530 PF03958 Bacterial type II/III secretion system short domain LA358_16535 PF00437 Type II/IV secretion system protein LA358_16540 PF00482 Type II secretion system (T2SS), protein F LA358_16545 PF07963 Prokaryotic N-terminal methylation motif LA358_16545 PF08334 Type II secretion system (T2SS), protein G LA358_16550 PF07963 Prokaryotic N-terminal methylation motif LA358_16550 PF12019 Type II transport protein GspH LA358_16555 PF07963 Prokaryotic N-terminal methylation motif LA358_16555 PF02501 Type II secretion system (T2SS), protein I LA358_16560 PF07963 Prokaryotic N-terminal methylation motif LA358_16560 PF11612 Type II secretion system (T2SS), protein J LA358_16565 PF03934 Type II secretion system (T2SS), protein K LA358_16570 PF12693 GspL periplasmic domain LA358_16570 PF05134 Type II secretion system (T2SS), protein L LA358_16575 PF04612 Type II secretion system (T2SS), protein M LA358_16580 PF01203 Type II secretion system (T2SS), protein N LA358_16585 PF04962 KduI/IolB family LA358_16595 PF10688 Bacterial inner membrane protein LA358_16600 PF01614 Bacterial transcriptional regulator LA358_16600 PF09339 IclR helix-turn-helix domain LA358_16605 PF00294 pfkB family carbohydrate kinase LA358_16610 PF01081 KDPG and KHG aldolase LA358_16615 PF04074 YhcH/YjgK/YiaL LA358_16620 PF03480 Bacterial extracellular solute-binding protein, family 7 LA358_16630 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LA358_16635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA358_16640 PF02378 Phosphotransferase system, EIIC LA358_16645 PF00232 Glycosyl hydrolase family 1 LA358_16650 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LA358_16655 PF07883 Cupin domain LA358_16655 PF12833 Helix-turn-helix domain LA358_16660 PF11975 Family 4 glycosyl hydrolase C-terminal domain LA358_16660 PF02056 Family 4 glycosyl hydrolase LA358_16665 PF04794 YdjC-like protein LA358_16670 PF07969 Amidohydrolase family LA358_16680 PF01027 Inhibitor of apoptosis-promoting Bax1 LA358_16685 PF12805 FUSC-like inner membrane protein yccS LA358_16690 PF04358 DsrC like protein LA358_16700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LA358_16730 PF08497 Radical SAM N-terminal LA358_16730 PF04055 Radical SAM superfamily LA358_16730 PF11842 Domain of unknown function (DUF3362) LA358_16735 PF00873 AcrB/AcrD/AcrF family LA358_16740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_16740 PF00529 HlyD membrane-fusion protein of T1SS LA358_16745 PF00072 Response regulator receiver domain LA358_16745 PF00990 Diguanylate cyclase, GGDEF domain LA358_16750 PF01734 Patatin-like phospholipase LA358_16755 PF00209 Sodium:neurotransmitter symporter family LA358_16770 PF00691 OmpA family LA358_16770 PF01389 OmpA-like transmembrane domain LA358_16775 PF01389 OmpA-like transmembrane domain LA358_16775 PF00691 OmpA family LA358_16780 PF00691 OmpA family LA358_16780 PF01389 OmpA-like transmembrane domain LA358_16785 PF03949 Malic enzyme, NAD binding domain LA358_16785 PF00390 Malic enzyme, N-terminal domain LA358_16790 PF12833 Helix-turn-helix domain LA358_16795 PF01554 MatE LA358_16800 PF10692 Protein of unknown function (DUF2498) LA358_16805 PF08448 PAS fold LA358_16805 PF00990 Diguanylate cyclase, GGDEF domain LA358_16810 PF00860 Permease family LA358_16820 PF01235 Sodium:alanine symporter family LA358_16825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LA358_16825 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LA358_16830 PF01699 Sodium/calcium exchanger protein LA358_16835 PF08534 Redoxin LA358_16845 PF00293 NUDIX domain LA358_16860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA358_16860 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LA358_16875 PF03932 CutC family LA358_16880 PF00480 ROK family LA358_16890 PF01435 Peptidase family M48 LA358_16895 PF12849 PBP superfamily domain LA358_16900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_16900 PF00512 His Kinase A (phospho-acceptor) domain LA358_16900 PF00989 PAS fold LA358_16900 PF11808 Phosphate regulon sensor protein PhoR LA358_16905 PF00072 Response regulator receiver domain LA358_16905 PF00486 Transcriptional regulatory protein, C terminal LA358_16910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA358_16915 PF00990 Diguanylate cyclase, GGDEF domain LA358_16920 PF00158 Sigma-54 interaction domain LA358_16920 PF01590 GAF domain LA358_16920 PF02954 Bacterial regulatory protein, Fis family LA358_16925 PF00171 Aldehyde dehydrogenase family LA358_16935 PF00892 EamA-like transporter family LA358_16940 PF12431 Transcriptional regulator LA358_16940 PF00072 Response regulator receiver domain LA358_16945 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LA358_16945 PF00989 PAS fold LA358_16945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_16945 PF17203 Single cache domain 3 LA358_16955 PF01047 MarR family LA358_16960 PF00529 HlyD membrane-fusion protein of T1SS LA358_16960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA358_16980 PF01679 Proteolipid membrane potential modulator LA358_16990 PF13597 Anaerobic ribonucleoside-triphosphate reductase LA358_16990 PF03477 ATP cone domain LA358_17000 PF03120 NAD-dependent DNA ligase OB-fold domain LA358_17000 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LA358_17000 PF12826 Helix-hairpin-helix motif LA358_17000 PF00533 BRCA1 C Terminus (BRCT) domain LA358_17000 PF01653 NAD-dependent DNA ligase adenylation domain LA358_17005 PF04354 ZipA, C-terminal FtsZ-binding domain LA358_17010 PF06470 SMC proteins Flexible Hinge Domain LA358_17010 PF02463 RecF/RecN/SMC N terminal domain LA358_17020 PF03458 UPF0126 domain LA358_17030 PF05951 Bacterial protein of unknown function (DUF882) LA358_17035 PF01471 Putative peptidoglycan binding domain LA358_17035 PF03734 L,D-transpeptidase catalytic domain LA358_17050 PF00535 Glycosyl transferase family 2 LA358_17065 PF00128 Alpha amylase, catalytic domain LA358_17075 PF00196 Bacterial regulatory proteins, luxR family LA358_17075 PF00072 Response regulator receiver domain LA358_17095 PF00999 Sodium/hydrogen exchanger family LA358_17095 PF02080 TrkA-C domain LA358_17095 PF02254 TrkA-N domain LA358_17100 PF00990 Diguanylate cyclase, GGDEF domain LA358_17105 PF11734 TilS substrate C-terminal domain LA358_17105 PF01171 PP-loop family LA358_17105 PF09179 TilS substrate binding domain LA358_17110 PF01431 Peptidase family M13 LA358_17110 PF05649 Peptidase family M13 LA358_17120 PF08543 Phosphomethylpyrimidine kinase LA358_17125 PF01276 Orn/Lys/Arg decarboxylase, major domain LA358_17125 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LA358_17125 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LA358_17130 PF13520 Amino acid permease LA358_17135 PF18500 CadC C-terminal domain 1 LA358_17135 PF00486 Transcriptional regulatory protein, C terminal LA358_17140 PF13520 Amino acid permease LA358_17160 PF00579 tRNA synthetases class I (W and Y) LA358_17165 PF01476 LysM domain LA358_17165 PF01551 Peptidase family M23 LA358_17165 PF08525 Opacity-associated protein A N-terminal motif LA358_17170 PF03702 Anhydro-N-acetylmuramic acid kinase LA358_17180 PF01042 Endoribonuclease L-PSP LA358_17190 PF00456 Transketolase, thiamine diphosphate binding domain LA358_17190 PF02780 Transketolase, C-terminal domain LA358_17190 PF02779 Transketolase, pyrimidine binding domain LA358_17195 PF02773 S-adenosylmethionine synthetase, C-terminal domain LA358_17195 PF02772 S-adenosylmethionine synthetase, central domain LA358_17195 PF00438 S-adenosylmethionine synthetase, N-terminal domain LA358_17200 PF10263 SprT-like family LA358_17205 PF04231 Endonuclease I LA358_17210 PF04452 RNA methyltransferase LA358_17215 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LA358_17215 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LA358_17220 PF00672 HAMP domain LA358_17220 PF12729 Four helix bundle sensory module for signal transduction LA358_17220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_17225 PF02622 Uncharacterized ACR, COG1678 LA358_17230 PF03652 Holliday junction resolvase LA358_17235 PF00144 Beta-lactamase LA358_17240 PF17863 AAA lid domain LA358_17240 PF07726 ATPase family associated with various cellular activities (AAA) LA358_17250 PF01841 Transglutaminase-like superfamily LA358_17250 PF11992 Domain of unknown function (DUF3488) LA358_17250 PF13559 Domain of unknown function (DUF4129) LA358_17255 PF01235 Sodium:alanine symporter family LA358_17260 PF00923 Transaldolase/Fructose-6-phosphate aldolase LA358_17270 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LA358_17275 PF02811 PHP domain LA358_17275 PF14579 Helix-hairpin-helix motif LA358_17275 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LA358_17275 PF07733 Bacterial DNA polymerase III alpha NTPase domain LA358_17275 PF01336 OB-fold nucleic acid binding domain LA358_17280 PF01351 Ribonuclease HII LA358_17285 PF02684 Lipid-A-disaccharide synthetase LA358_17290 PF00132 Bacterial transferase hexapeptide (six repeats) LA358_17290 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LA358_17295 PF07977 FabA-like domain LA358_17300 PF00132 Bacterial transferase hexapeptide (six repeats) LA358_17300 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LA358_17305 PF03938 Outer membrane protein (OmpH-like) LA358_17310 PF01103 Surface antigen LA358_17310 PF07244 Surface antigen variable number repeat LA358_17315 PF17820 PDZ domain LA358_17315 PF02163 Peptidase family M50 LA358_17320 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LA358_17320 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LA358_17320 PF13288 DXP reductoisomerase C-terminal domain LA358_17330 PF01255 Putative undecaprenyl diphosphate synthase LA358_17335 PF01765 Ribosome recycling factor LA358_17340 PF00696 Amino acid kinase family LA358_17345 PF00889 Elongation factor TS LA358_17350 PF00318 Ribosomal protein S2 LA358_17355 PF00557 Metallopeptidase family M24 LA358_17360 PF01966 HD domain LA358_17360 PF01909 Nucleotidyltransferase domain LA358_17360 PF01842 ACT domain LA358_17360 PF08335 GlnD PII-uridylyltransferase LA358_17365 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LA358_17365 PF14602 Hexapeptide repeat of succinyl-transferase LA358_17365 PF00132 Bacterial transferase hexapeptide (six repeats) LA358_17370 PF11944 Protein of unknown function (DUF3461) LA358_17375 PF00367 phosphotransferase system, EIIB LA358_17375 PF02378 Phosphotransferase system, EIIC LA358_17380 PF07148 Maltose operon periplasmic protein precursor (MalM) LA358_17385 PF02264 LamB porin LA358_17390 PF00258 Flavodoxin LA358_17395 PF00849 RNA pseudouridylate synthase LA358_17400 PF04287 tRNA pseudouridine synthase C LA358_17425 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LA358_17430 PF07348 Syd protein (SUKH-2) LA358_17435 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LA358_17435 PF14489 QueF-like protein LA358_17445 PF00990 Diguanylate cyclase, GGDEF domain LA358_17450 PF03641 Possible lysine decarboxylase LA358_17450 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LA358_17450 PF11892 Domain of unknown function (DUF3412) LA358_17455 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LA358_17455 PF01367 5'-3' exonuclease, C-terminal SAM fold LA358_17460 PF00180 Isocitrate/isopropylmalate dehydrogenase LA358_17460 PF18324 Hypothetical protein TT1725 LA358_17470 PF01728 FtsJ-like methyltransferase LA358_17470 PF18125 RlmM ferredoxin-like domain LA358_17475 PF04241 Protein of unknown function (DUF423) LA358_17485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_17485 PF03466 LysR substrate binding domain LA358_17490 PF00672 HAMP domain LA358_17490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_17495 PF11799 impB/mucB/samB family C-terminal domain LA358_17495 PF00817 impB/mucB/samB family LA358_17495 PF11798 IMS family HHH motif LA358_17505 PF01965 DJ-1/PfpI family LA358_17510 PF02558 Ketopantoate reductase PanE/ApbA LA358_17510 PF08546 Ketopantoate reductase PanE/ApbA C terminal LA358_17515 PF04461 Protein of unknown function (DUF520) LA358_17520 PF03502 Nucleoside-specific channel-forming protein, Tsx LA358_17525 PF07690 Major Facilitator Superfamily LA358_17530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LA358_17540 PF05175 Methyltransferase small domain LA358_17545 PF01722 BolA-like protein LA358_17550 PF11973 NQRA C-terminal domain LA358_17550 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LA358_17555 PF03116 NQR2, RnfD, RnfE family LA358_17560 PF04205 FMN-binding domain LA358_17565 PF02508 Rnf-Nqr subunit, membrane protein LA358_17570 PF02508 Rnf-Nqr subunit, membrane protein LA358_17575 PF00970 Oxidoreductase FAD-binding domain LA358_17575 PF00111 2Fe-2S iron-sulfur cluster binding domain LA358_17575 PF00175 Oxidoreductase NAD-binding domain LA358_17580 PF02424 ApbE family LA358_17625 PF00106 short chain dehydrogenase LA358_17635 PF00875 DNA photolyase LA358_17635 PF03441 FAD binding domain of DNA photolyase LA358_17640 PF13411 MerR HTH family regulatory protein LA358_17645 PF08349 Protein of unknown function (DUF1722) LA358_17675 PF00800 Prephenate dehydratase LA358_17675 PF01817 Chorismate mutase type II LA358_17705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_17710 PF03573 outer membrane porin, OprD family LA358_17715 PF00106 short chain dehydrogenase LA358_17740 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LA358_17775 PF02805 Metal binding domain of Ada LA358_17775 PF06029 AlkA N-terminal domain LA358_17775 PF00730 HhH-GPD superfamily base excision DNA repair protein LA358_17775 PF12833 Helix-turn-helix domain LA358_17780 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LA358_17780 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LA358_17790 PF12392 Collagenase LA358_17790 PF01136 Peptidase family U32 LA358_17795 PF01810 LysE type translocator LA358_17800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_17800 PF03466 LysR substrate binding domain LA358_17805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA358_17805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA358_17810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_17810 PF00672 HAMP domain LA358_17810 PF02743 Cache domain LA358_17815 PF00072 Response regulator receiver domain LA358_17825 PF01584 CheW-like domain LA358_17825 PF07194 P2 response regulator binding domain LA358_17825 PF01627 Hpt domain LA358_17825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_17825 PF02895 Signal transducing histidine kinase, homodimeric domain LA358_17830 PF01584 CheW-like domain LA358_17835 PF00672 HAMP domain LA358_17835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_17840 PF01739 CheR methyltransferase, SAM binding domain LA358_17840 PF03705 CheR methyltransferase, all-alpha domain LA358_17845 PF03975 CheD chemotactic sensory transduction LA358_17850 PF01339 CheB methylesterase LA358_17850 PF00072 Response regulator receiver domain LA358_17855 PF00013 KH domain LA358_17855 PF03725 3' exoribonuclease family, domain 2 LA358_17855 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LA358_17855 PF01138 3' exoribonuclease family, domain 1 LA358_17855 PF00575 S1 RNA binding domain LA358_17860 PF00312 Ribosomal protein S15 LA358_17865 PF01509 TruB family pseudouridylate synthase (N terminal domain) LA358_17865 PF16198 tRNA pseudouridylate synthase B C-terminal domain LA358_17865 PF09157 Pseudouridine synthase II TruB, C-terminal LA358_17870 PF02033 Ribosome-binding factor A LA358_17875 PF08364 Bacterial translation initiation factor IF-2 associated region LA358_17875 PF11987 Translation-initiation factor 2 LA358_17875 PF00009 Elongation factor Tu GTP binding domain LA358_17875 PF04760 Translation initiation factor IF-2, N-terminal region LA358_17880 PF13184 NusA-like KH domain LA358_17880 PF00575 S1 RNA binding domain LA358_17880 PF08529 NusA N-terminal domain LA358_17885 PF02576 RimP N-terminal domain LA358_17885 PF17384 RimP C-terminal SH3 domain LA358_17900 PF03840 Preprotein translocase SecG subunit LA358_17905 PF00121 Triosephosphate isomerase LA358_17910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LA358_17910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LA358_17910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LA358_17910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LA358_17915 PF00809 Pterin binding enzyme LA358_17920 PF06480 FtsH Extracellular LA358_17920 PF00004 ATPase family associated with various cellular activities (AAA) LA358_17920 PF17862 AAA+ lid domain LA358_17920 PF01434 Peptidase family M41 LA358_17925 PF01728 FtsJ-like methyltransferase LA358_17930 PF01985 CRS1 / YhbY (CRM) domain LA358_17940 PF03449 Transcription elongation factor, N-terminal LA358_17940 PF01272 Transcription elongation factor, GreA/GreB, C-term LA358_17945 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA358_17945 PF00691 OmpA family LA358_17945 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA358_17945 PF00691 OmpA family LA358_17950 PF01618 MotA/TolQ/ExbB proton channel family LA358_17955 PF02609 Exonuclease VII small subunit LA358_17960 PF00348 Polyprenyl synthetase LA358_17965 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LA358_17965 PF02779 Transketolase, pyrimidine binding domain LA358_17965 PF02780 Transketolase, C-terminal domain LA358_17970 PF00528 Binding-protein-dependent transport system inner membrane component LA358_17970 PF12911 N-terminal TM domain of oligopeptide transport permease C LA358_17975 PF00528 Binding-protein-dependent transport system inner membrane component LA358_17980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LA358_17985 PF00005 ABC transporter LA358_17985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA358_17990 PF04608 Phosphatidylglycerophosphatase A LA358_17995 PF00586 AIR synthase related protein, N-terminal domain LA358_17995 PF02769 AIR synthase related protein, C-terminal domain LA358_18000 PF01029 NusB family LA358_18005 PF00885 6,7-dimethyl-8-ribityllumazine synthase LA358_18010 PF00925 GTP cyclohydrolase II LA358_18010 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LA358_18015 PF00677 Lumazine binding domain LA358_18020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LA358_18020 PF01872 RibD C-terminal domain LA358_18025 PF03477 ATP cone domain LA358_18030 PF00464 Serine hydroxymethyltransferase LA358_18035 PF00072 Response regulator receiver domain LA358_18035 PF00672 HAMP domain LA358_18035 PF01627 Hpt domain LA358_18035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_18035 PF00512 His Kinase A (phospho-acceptor) domain LA358_18040 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LA358_18050 PF00486 Transcriptional regulatory protein, C terminal LA358_18050 PF00072 Response regulator receiver domain LA358_18055 PF03264 NapC/NirT cytochrome c family, N-terminal region LA358_18060 PF00384 Molybdopterin oxidoreductase LA358_18060 PF18364 Molybdopterin oxidoreductase N-terminal domain LA358_18060 PF01568 Molydopterin dinucleotide binding domain LA358_18065 PF02613 Nitrate reductase delta subunit LA358_18080 PF13188 PAS domain LA358_18080 PF03707 Bacterial signalling protein N terminal repeat LA358_18080 PF00990 Diguanylate cyclase, GGDEF domain LA358_18080 PF00563 EAL domain LA358_18085 PF16177 Acetyl-coenzyme A synthetase N-terminus LA358_18085 PF13193 AMP-binding enzyme C-terminal domain LA358_18085 PF00501 AMP-binding enzyme LA358_18090 PF01220 Dehydroquinase class II LA358_18095 PF00364 Biotin-requiring enzyme LA358_18100 PF02785 Biotin carboxylase C-terminal domain LA358_18100 PF00289 Biotin carboxylase, N-terminal domain LA358_18100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA358_18110 PF00474 Sodium:solute symporter family LA358_18115 PF00367 phosphotransferase system, EIIB LA358_18115 PF02378 Phosphotransferase system, EIIC LA358_18115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LA358_18120 PF03466 LysR substrate binding domain LA358_18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_18125 PF00107 Zinc-binding dehydrogenase LA358_18125 PF08240 Alcohol dehydrogenase GroES-like domain LA358_18135 PF00881 Nitroreductase family LA358_18145 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA358_18145 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA358_18150 PF01343 Peptidase family S49 LA358_18155 PF17969 L,D-transpeptidase C-terminal domain LA358_18155 PF03734 L,D-transpeptidase catalytic domain LA358_18160 PF00528 Binding-protein-dependent transport system inner membrane component LA358_18165 PF12911 N-terminal TM domain of oligopeptide transport permease C LA358_18165 PF00528 Binding-protein-dependent transport system inner membrane component LA358_18175 PF00005 ABC transporter LA358_18175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA358_18180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LA358_18180 PF00005 ABC transporter LA358_18190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LA358_18190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LA358_18190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LA358_18195 PF01370 NAD dependent epimerase/dehydratase family LA358_18200 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LA358_18210 PF00535 Glycosyl transferase family 2 LA358_18215 PF01464 Transglycosylase SLT domain LA358_18220 PF00005 ABC transporter LA358_18220 PF12848 ABC transporter LA358_18230 PF00860 Permease family LA358_18240 PF08335 GlnD PII-uridylyltransferase LA358_18240 PF03710 Glutamate-ammonia ligase adenylyltransferase LA358_18250 PF05170 AsmA family LA358_18255 PF09297 NADH pyrophosphatase zinc ribbon domain LA358_18255 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LA358_18255 PF00293 NUDIX domain LA358_18280 PF03060 Nitronate monooxygenase LA358_18290 PF00445 Ribonuclease T2 family LA358_18300 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase LA358_18310 PF00990 Diguanylate cyclase, GGDEF domain LA358_18315 PF00270 DEAD/DEAH box helicase LA358_18315 PF00271 Helicase conserved C-terminal domain LA358_18340 PF02146 Sir2 family LA358_18360 PF01425 Amidase LA358_18365 PF04371 Porphyromonas-type peptidyl-arginine deiminase LA358_18370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_18370 PF03466 LysR substrate binding domain LA358_18380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA358_18385 PF00140 Sigma-70 factor, region 1.2 LA358_18385 PF04542 Sigma-70 region 2 LA358_18385 PF04539 Sigma-70 region 3 LA358_18385 PF04545 Sigma-70, region 4 LA358_18390 PF01476 LysM domain LA358_18390 PF01551 Peptidase family M23 LA358_18395 PF09335 SNARE associated Golgi protein LA358_18405 PF01975 Survival protein SurE LA358_18410 PF01142 tRNA pseudouridine synthase D (TruD) LA358_18415 PF02542 YgbB family LA358_18420 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LA358_18425 PF04977 Septum formation initiator LA358_18430 PF00474 Sodium:solute symporter family LA358_18435 PF17969 L,D-transpeptidase C-terminal domain LA358_18435 PF03734 L,D-transpeptidase catalytic domain LA358_18440 PF00924 Mechanosensitive ion channel LA358_18445 PF00871 Acetokinase family LA358_18450 PF04074 YhcH/YjgK/YiaL LA358_18460 PF00394 Multicopper oxidase LA358_18460 PF07732 Multicopper oxidase LA358_18460 PF10518 TAT (twin-arginine translocation) pathway signal sequence LA358_18460 PF07731 Multicopper oxidase LA358_18465 PF01177 Asp/Glu/Hydantoin racemase LA358_18470 PF01810 LysE type translocator LA358_18480 PF00155 Aminotransferase class I and II LA358_18480 PF00392 Bacterial regulatory proteins, gntR family LA358_18490 PF00571 CBS domain LA358_18490 PF01380 SIS domain LA358_18495 PF00005 ABC transporter LA358_18495 PF12848 ABC transporter LA358_18505 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LA358_18550 PF00672 HAMP domain LA358_18550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_18550 PF17200 Single Cache domain 2 LA358_18555 PF00113 Enolase, C-terminal TIM barrel domain LA358_18555 PF03952 Enolase, N-terminal domain LA358_18560 PF00117 Glutamine amidotransferase class-I LA358_18560 PF06418 CTP synthase N-terminus LA358_18565 PF03819 MazG nucleotide pyrophosphohydrolase domain LA358_18570 PF13291 ACT domain LA358_18570 PF04607 Region found in RelA / SpoT proteins LA358_18570 PF02824 TGS domain LA358_18575 PF01938 TRAM domain LA358_18575 PF05958 tRNA (Uracil-5-)-methyltransferase LA358_18580 PF00672 HAMP domain LA358_18580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_18580 PF00512 His Kinase A (phospho-acceptor) domain LA358_18580 PF01627 Hpt domain LA358_18580 PF00072 Response regulator receiver domain LA358_18580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LA358_18585 PF07308 Protein of unknown function (DUF1456) LA358_18590 PF01510 N-acetylmuramoyl-L-alanine amidase LA358_18595 PF00210 Ferritin-like domain LA358_18600 PF03063 Prismane/CO dehydrogenase family LA358_18605 PF00175 Oxidoreductase NAD-binding domain LA358_18605 PF00111 2Fe-2S iron-sulfur cluster binding domain LA358_18605 PF00970 Oxidoreductase FAD-binding domain LA358_18610 PF01370 NAD dependent epimerase/dehydratase family LA358_18615 PF01569 PAP2 superfamily LA358_18620 PF08245 Mur ligase middle domain LA358_18620 PF02875 Mur ligase family, glutamate ligase domain LA358_18620 PF01225 Mur ligase family, catalytic domain LA358_18625 PF02441 Flavoprotein LA358_18630 PF00440 Bacterial regulatory proteins, tetR family LA358_18635 PF00156 Phosphoribosyl transferase domain LA358_18640 PF00005 ABC transporter LA358_18645 PF01061 ABC-2 type transporter LA358_18660 PF02569 Pantoate-beta-alanine ligase LA358_18665 PF02548 Ketopantoate hydroxymethyltransferase LA358_18670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LA358_18675 PF01743 Poly A polymerase head domain LA358_18675 PF12626 Polymerase A arginine-rich C-terminus LA358_18675 PF12627 Probable RNA and SrmB- binding site of polymerase A LA358_18680 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA358_18685 PF01258 Prokaryotic dksA/traR C4-type zinc finger LA358_18690 PF03749 Sugar fermentation stimulation protein RE domain LA358_18690 PF17746 SfsA N-terminal OB domain LA358_18695 PF02834 LigT like Phosphoesterase LA358_18700 PF00270 DEAD/DEAH box helicase LA358_18700 PF00271 Helicase conserved C-terminal domain LA358_18700 PF08482 ATP-dependent helicase C-terminal LA358_18700 PF04408 Helicase associated domain (HA2) LA358_18705 PF14814 Bifunctional transglycosylase second domain LA358_18705 PF00912 Transglycosylase LA358_18705 PF00905 Penicillin binding protein transpeptidase domain LA358_18710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA358_18715 PF00719 Inorganic pyrophosphatase LA358_18730 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LA358_18745 PF00005 ABC transporter LA358_18765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA358_18765 PF00672 HAMP domain LA358_18765 PF12729 Four helix bundle sensory module for signal transduction LA358_18780 PF02080 TrkA-C domain LA358_18780 PF03600 Citrate transporter LA358_18785 PF00009 Elongation factor Tu GTP binding domain LA358_18790 PF01507 Phosphoadenosine phosphosulfate reductase family LA358_18795 PF10414 Sirohaem synthase dimerisation region LA358_18795 PF14824 Sirohaem biosynthesis protein central LA358_18795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA358_18800 PF01145 SPFH domain / Band 7 family LA358_18800 PF16200 C-terminal region of band_7 LA358_18805 PF01957 NfeD-like C-terminal, partner-binding LA358_18810 PF02445 Quinolinate synthetase A protein LA358_18815 PF01263 Aldose 1-epimerase LA358_18820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LA358_18820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LA358_18825 PF02446 4-alpha-glucanotransferase LA358_18830 PF02806 Alpha amylase, C-terminal all-beta domain LA358_18830 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA358_18830 PF00128 Alpha amylase, catalytic domain LA358_18835 PF00128 Alpha amylase, catalytic domain LA358_18835 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA358_18840 PF01641 SelR domain LA358_18850 PF00293 NUDIX domain LA358_18860 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LA358_18860 PF02843 Phosphoribosylglycinamide synthetase, C domain LA358_18860 PF02844 Phosphoribosylglycinamide synthetase, N domain LA358_18865 PF02142 MGS-like domain LA358_18865 PF01808 AICARFT/IMPCHase bienzyme LA358_18870 PF13411 MerR HTH family regulatory protein LA358_18875 PF03889 Alternative ribosome-rescue factor A LA358_18880 PF06969 HemN C-terminal domain LA358_18880 PF04055 Radical SAM superfamily LA358_18885 PF01725 Ham1 family LA358_18890 PF07690 Major Facilitator Superfamily LA358_18895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LA358_18895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LA358_18905 PF13302 Acetyltransferase (GNAT) domain LA358_18910 PF13302 Acetyltransferase (GNAT) domain LA358_18915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_18915 PF03466 LysR substrate binding domain LA358_18920 PF07690 Major Facilitator Superfamily LA358_18925 PF00583 Acetyltransferase (GNAT) family LA358_18930 PF00583 Acetyltransferase (GNAT) family LA358_18940 PF00009 Elongation factor Tu GTP binding domain LA358_18940 PF03144 Elongation factor Tu domain 2 LA358_18940 PF16658 Class II release factor RF3, C-terminal domain LA358_18945 PF00990 Diguanylate cyclase, GGDEF domain LA358_18945 PF00072 Response regulator receiver domain LA358_18950 PF03707 Bacterial signalling protein N terminal repeat LA358_18950 PF13188 PAS domain LA358_18950 PF00990 Diguanylate cyclase, GGDEF domain LA358_18950 PF00563 EAL domain LA358_18955 PF05762 VWA domain containing CoxE-like protein LA358_18960 PF07728 AAA domain (dynein-related subfamily) LA358_18960 PF17868 AAA lid domain LA358_18960 PF12592 Protein of unknown function (DUF3763) LA358_18975 PF00583 Acetyltransferase (GNAT) family LA358_18985 PF00501 AMP-binding enzyme LA358_18995 PF04262 Glutamate-cysteine ligase LA358_19000 PF00675 Insulinase (Peptidase family M16) LA358_19000 PF05193 Peptidase M16 inactive domain LA358_19005 PF09335 SNARE associated Golgi protein LA358_19010 PF00107 Zinc-binding dehydrogenase LA358_19010 PF08240 Alcohol dehydrogenase GroES-like domain LA358_19020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA358_19040 PF00970 Oxidoreductase FAD-binding domain LA358_19040 PF00175 Oxidoreductase NAD-binding domain LA358_19045 PF03948 Ribosomal protein L9, C-terminal domain LA358_19045 PF01281 Ribosomal protein L9, N-terminal domain LA358_19050 PF01084 Ribosomal protein S18 LA358_19055 PF01250 Ribosomal protein S6 LA358_19060 PF01566 Natural resistance-associated macrophage protein LA358_19065 PF01411 tRNA synthetases class II (A) LA358_19065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LA358_19065 PF02272 DHHA1 domain LA358_19070 PF00216 Bacterial DNA-binding protein LA358_19075 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LA358_19080 PF07238 PilZ domain LA358_19085 PF18073 Rubredoxin metal binding domain LA358_19100 PF18429 Domain of unknown function (DUF5609) LA358_19110 PF00563 EAL domain LA358_19110 PF00990 Diguanylate cyclase, GGDEF domain LA358_19110 PF05231 MASE1 LA358_19110 PF08447 PAS fold LA358_19110 PF08448 PAS fold LA358_19110 PF13426 PAS domain LA358_19115 PF01048 Phosphorylase superfamily LA358_19120 PF01676 Metalloenzyme superfamily LA358_19125 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LA358_19125 PF00591 Glycosyl transferase family, a/b domain LA358_19125 PF02885 Glycosyl transferase family, helical bundle domain LA358_19130 PF01791 DeoC/LacD family aldolase LA358_19140 PF01773 Na+ dependent nucleoside transporter N-terminus LA358_19140 PF07662 Na+ dependent nucleoside transporter C-terminus LA358_19140 PF07670 Nucleoside recognition LA358_19145 PF01026 TatD related DNase LA358_19150 PF07963 Prokaryotic N-terminal methylation motif LA358_19160 PF02664 S-Ribosylhomocysteinase (LuxS) LA358_19170 PF00543 Nitrogen regulatory protein P-II LA358_19175 PF00795 Carbon-nitrogen hydrolase LA358_19175 PF02540 NAD synthase LA358_19210 PF05567 Neisseria PilC beta-propeller domain LA358_19235 PF02401 LytB protein LA358_19240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA358_19245 PF01252 Signal peptidase (SPase) II LA358_19250 PF08264 Anticodon-binding domain of tRNA LA358_19250 PF00133 tRNA synthetases class I (I, L, M and V) LA358_19250 PF06827 Zinc finger found in FPG and IleRS LA358_19255 PF06574 FAD synthetase LA358_19255 PF01687 Riboflavin kinase LA358_19260 PF03023 Lipid II flippase MurJ LA358_19265 PF01649 Ribosomal protein S20 LA358_19270 PF01022 Bacterial regulatory protein, arsR family LA358_19275 PF03466 LysR substrate binding domain LA358_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_19285 PF06965 Na+/H+ antiporter 1 LA358_19290 PF04222 Protein of unknown function (DUF416) LA358_19295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA358_19300 PF01476 LysM domain LA358_19300 PF08525 Opacity-associated protein A N-terminal motif LA358_19300 PF01551 Peptidase family M23 LA358_19320 PF01297 Zinc-uptake complex component A periplasmic LA358_19325 PF00005 ABC transporter LA358_19330 PF00950 ABC 3 transport family LA358_19335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_19335 PF03466 LysR substrate binding domain LA358_19340 PF00892 EamA-like transporter family LA358_19345 PF03167 Uracil DNA glycosylase superfamily LA358_19350 PF00892 EamA-like transporter family LA358_19360 PF01541 GIY-YIG catalytic domain LA358_19375 PF04012 PspA/IM30 family LA358_19380 PF01553 Acyltransferase LA358_19400 PF00578 AhpC/TSA family LA358_19405 PF00684 DnaJ central domain LA358_19405 PF01556 DnaJ C terminal domain LA358_19405 PF00226 DnaJ domain LA358_19430 PF03222 Tryptophan/tyrosine permease family LA358_19435 PF01212 Beta-eliminating lyase LA358_19460 PF13737 Transposase DDE domain LA358_19470 PF03989 DNA gyrase C-terminal domain, beta-propeller LA358_19470 PF00521 DNA gyrase/topoisomerase IV, subunit A LA358_19475 PF03992 Antibiotic biosynthesis monooxygenase LA358_19480 PF00204 DNA gyrase B LA358_19480 PF00986 DNA gyrase B subunit, carboxyl terminus LA358_19480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA358_19480 PF01751 Toprim domain LA358_19485 PF00293 NUDIX domain LA358_19490 PF05728 Uncharacterised protein family (UPF0227) LA358_19495 PF00149 Calcineurin-like phosphoesterase LA358_19500 PF06853 Protein of unknown function (DUF1249) LA358_19505 PF00293 NUDIX domain LA358_19510 PF02321 Outer membrane efflux protein LA358_19515 PF01467 Cytidylyltransferase-like LA358_19515 PF00294 pfkB family carbohydrate kinase LA358_19520 PF03279 Bacterial lipid A biosynthesis acyltransferase LA358_19525 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA358_19525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA358_19525 PF02378 Phosphotransferase system, EIIC LA358_19530 PF08125 Mannitol dehydrogenase C-terminal domain LA358_19530 PF01232 Mannitol dehydrogenase Rossmann domain LA358_19535 PF05068 Mannitol repressor LA358_19545 PF00226 DnaJ domain LA358_19545 PF01556 DnaJ C terminal domain LA358_19545 PF00684 DnaJ central domain LA358_19560 PF01544 CorA-like Mg2+ transporter protein LA358_19565 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LA358_19580 PF04307 LexA-binding, inner membrane-associated putative hydrolase LA358_19585 PF07662 Na+ dependent nucleoside transporter C-terminus LA358_19585 PF07670 Nucleoside recognition LA358_19585 PF01773 Na+ dependent nucleoside transporter N-terminus LA358_19590 PF00271 Helicase conserved C-terminal domain LA358_19590 PF03880 DbpA RNA binding domain LA358_19590 PF00270 DEAD/DEAH box helicase LA358_19615 PF01040 UbiA prenyltransferase family LA358_19620 PF00425 chorismate binding enzyme LA358_19625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA358_19625 PF16582 Middle domain of thiamine pyrophosphate LA358_19625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LA358_19630 PF12697 Alpha/beta hydrolase family LA358_19635 PF00378 Enoyl-CoA hydratase/isomerase LA358_19640 PF13378 Enolase C-terminal domain-like LA358_19645 PF00501 AMP-binding enzyme LA358_19645 PF13193 AMP-binding enzyme C-terminal domain LA358_19650 PF01752 Collagenase LA358_19650 PF08453 Peptidase family M9 N-terminal LA358_19655 PF02698 DUF218 domain LA358_19660 PF13718 GNAT acetyltransferase 2 LA358_19660 PF08351 Domain of unknown function (DUF1726) LA358_19660 PF17176 tRNA-binding domain LA358_19660 PF05127 Helicase LA358_19675 PF00210 Ferritin-like domain LA358_19680 PF02142 MGS-like domain LA358_19685 PF00465 Iron-containing alcohol dehydrogenase LA358_19695 PF03577 Peptidase family C69 LA358_19700 PF00106 short chain dehydrogenase LA358_19720 PF00128 Alpha amylase, catalytic domain LA358_19720 PF02903 Alpha amylase, N-terminal ig-like domain LA358_19720 PF16657 Maltogenic Amylase, C-terminal domain LA358_19730 PF00884 Sulfatase LA358_19735 PF01037 Lrp/AsnC ligand binding domain LA358_19745 PF04204 Homoserine O-succinyltransferase LA358_19750 PF12072 Domain of unknown function (DUF3552) LA358_19750 PF00013 KH domain LA358_19750 PF01966 HD domain LA358_19755 PF02464 Competence-damaged protein LA358_19755 PF00994 Probable molybdopterin binding domain LA358_19775 PF04363 Protein of unknown function (DUF496) LA358_19805 PF00271 Helicase conserved C-terminal domain LA358_19805 PF12137 RNA polymerase recycling family C-terminal LA358_19805 PF00176 SNF2 family N-terminal domain LA358_19805 PF18339 RapA N-terminal Tudor like domain 1 LA358_19805 PF18337 RapA N-terminal Tudor like domain LA358_19810 PF00849 RNA pseudouridylate synthase LA358_19820 PF14602 Hexapeptide repeat of succinyl-transferase LA358_19820 PF12464 Maltose acetyltransferase LA358_19825 PF00128 Alpha amylase, catalytic domain LA358_19825 PF11941 Domain of unknown function (DUF3459) LA358_19830 PF00367 phosphotransferase system, EIIB LA358_19830 PF02378 Phosphotransferase system, EIIC LA358_19835 PF00356 Bacterial regulatory proteins, lacI family LA358_19850 PF00710 Asparaginase, N-terminal LA358_19850 PF17763 Glutaminase/Asparaginase C-terminal domain LA358_19855 PF00571 CBS domain LA358_19855 PF03471 Transporter associated domain LA358_19855 PF01595 Cyclin M transmembrane N-terminal domain LA358_19860 PF09335 SNARE associated Golgi protein LA358_19865 PF00768 D-alanyl-D-alanine carboxypeptidase LA358_19900 PF02599 Global regulator protein family LA358_19905 PF13840 ACT domain LA358_19905 PF01842 ACT domain LA358_19905 PF00696 Amino acid kinase family LA358_19910 PF02272 DHHA1 domain LA358_19910 PF01411 tRNA synthetases class II (A) LA358_19910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LA358_19915 PF02631 RecX family LA358_19920 PF00154 recA bacterial DNA recombination protein LA358_19925 PF02464 Competence-damaged protein LA358_19965 PF13356 Arm DNA-binding domain LA358_19965 PF00589 Phage integrase family LA358_19970 PF05192 MutS domain III LA358_19970 PF00488 MutS domain V LA358_19970 PF05190 MutS family domain IV LA358_19970 PF05188 MutS domain II LA358_19970 PF01624 MutS domain I LA358_19980 PF04172 LrgB-like family LA358_19985 PF03788 LrgA family LA358_19990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA358_19990 PF03466 LysR substrate binding domain LA358_20000 PF04073 Aminoacyl-tRNA editing domain LA358_20005 PF00300 Histidine phosphatase superfamily (branch 1) LA358_20010 PF00311 Phosphoenolpyruvate carboxylase LA358_20015 PF07687 Peptidase dimerisation domain LA358_20015 PF01546 Peptidase family M20/M25/M40 LA358_20020 PF02774 Semialdehyde dehydrogenase, dimerisation domain LA358_20020 PF01118 Semialdehyde dehydrogenase, NAD binding domain LA358_20025 PF00696 Amino acid kinase family