locus-tag class description HQ395_00010 PF00263 Bacterial type II and III secretion system protein HQ395_00010 PF03958 Bacterial type II/III secretion system short domain HQ395_00015 PF11356 Type II secretion system protein C HQ395_00020 PF01479 S4 domain HQ395_00025 PF01430 Hsp33 protein HQ395_00030 PF01293 Phosphoenolpyruvate carboxykinase HQ395_00035 PF00392 Bacterial regulatory proteins, gntR family HQ395_00040 PF01321 Creatinase/Prolidase N-terminal domain HQ395_00040 PF00557 Metallopeptidase family M24 HQ395_00045 PF11756 Nitrous oxide-stimulated promoter HQ395_00050 PF00583 Acetyltransferase (GNAT) family HQ395_00055 PF05433 Glycine zipper 2TM domain HQ395_00060 PF02872 5'-nucleotidase, C-terminal domain HQ395_00060 PF00149 Calcineurin-like phosphoesterase HQ395_00065 PF01810 LysE type translocator HQ395_00070 PF03472 Autoinducer binding domain HQ395_00070 PF00196 Bacterial regulatory proteins, luxR family HQ395_00075 PF00765 Autoinducer synthase HQ395_00080 PF03466 LysR substrate binding domain HQ395_00080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_00085 PF00773 RNB domain HQ395_00085 PF17876 Cold shock domain HQ395_00085 PF08206 Ribonuclease B OB domain HQ395_00090 PF00440 Bacterial regulatory proteins, tetR family HQ395_00100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ395_00100 PF02378 Phosphotransferase system, EIIC HQ395_00100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ395_00105 PF08125 Mannitol dehydrogenase C-terminal domain HQ395_00105 PF01232 Mannitol dehydrogenase Rossmann domain HQ395_00110 PF05068 Mannitol repressor HQ395_00115 PF00999 Sodium/hydrogen exchanger family HQ395_00115 PF03471 Transporter associated domain HQ395_00115 PF02080 TrkA-C domain HQ395_00135 PF01544 CorA-like Mg2+ transporter protein HQ395_00140 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HQ395_00155 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ395_00160 PF07670 Nucleoside recognition HQ395_00160 PF07662 Na+ dependent nucleoside transporter C-terminus HQ395_00160 PF01773 Na+ dependent nucleoside transporter N-terminus HQ395_00165 PF03880 DbpA RNA binding domain HQ395_00165 PF00271 Helicase conserved C-terminal domain HQ395_00165 PF00270 DEAD/DEAH box helicase HQ395_00190 PF01040 UbiA prenyltransferase family HQ395_00195 PF00425 chorismate binding enzyme HQ395_00200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ395_00200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ395_00200 PF16582 Middle domain of thiamine pyrophosphate HQ395_00205 PF12697 Alpha/beta hydrolase family HQ395_00210 PF00378 Enoyl-CoA hydratase/isomerase HQ395_00215 PF13378 Enolase C-terminal domain-like HQ395_00220 PF00501 AMP-binding enzyme HQ395_00230 PF00419 Fimbrial protein HQ395_00235 PF00419 Fimbrial protein HQ395_00240 PF02753 Pili assembly chaperone PapD, C-terminal domain HQ395_00240 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HQ395_00245 PF13954 PapC N-terminal domain HQ395_00245 PF00577 Outer membrane usher protein HQ395_00245 PF13953 PapC C-terminal domain HQ395_00255 PF00419 Fimbrial protein HQ395_00265 PF08453 Peptidase family M9 N-terminal HQ395_00265 PF01752 Collagenase HQ395_00270 PF02698 DUF218 domain HQ395_00275 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ395_00275 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ395_00285 PF00561 alpha/beta hydrolase fold HQ395_00290 PF03280 Proteobacterial lipase chaperone protein HQ395_00305 PF12793 Sugar transport-related sRNA regulator N-term HQ395_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_00315 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ395_00325 PF00465 Iron-containing alcohol dehydrogenase HQ395_00340 PF03577 Peptidase family C69 HQ395_00345 PF00106 short chain dehydrogenase HQ395_00365 PF02308 MgtC family HQ395_00370 PF02903 Alpha amylase, N-terminal ig-like domain HQ395_00370 PF16657 Maltogenic Amylase, C-terminal domain HQ395_00370 PF00128 Alpha amylase, catalytic domain HQ395_00385 PF00884 Sulfatase HQ395_00390 PF01037 Lrp/AsnC ligand binding domain HQ395_00400 PF04204 Homoserine O-succinyltransferase HQ395_00405 PF01966 HD domain HQ395_00405 PF00013 KH domain HQ395_00405 PF12072 Domain of unknown function (DUF3552) HQ395_00410 PF00994 Probable molybdopterin binding domain HQ395_00410 PF02464 Competence-damaged protein HQ395_00420 PF00005 ABC transporter HQ395_00440 PF07722 Peptidase C26 HQ395_00450 PF13545 Crp-like helix-turn-helix domain HQ395_00450 PF00027 Cyclic nucleotide-binding domain HQ395_00460 PF13419 Haloacid dehalogenase-like hydrolase HQ395_00465 PF02899 Phage integrase, N-terminal SAM-like domain HQ395_00465 PF00589 Phage integrase family HQ395_00475 PF01678 Diaminopimelate epimerase HQ395_00480 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ395_00480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ395_00490 PF01491 Frataxin-like domain HQ395_00495 PF02230 Phospholipase/Carboxylesterase HQ395_00500 PF01295 Adenylate cyclase, class-I HQ395_00500 PF12633 Adenylate cyclase NT domain HQ395_00505 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HQ395_00505 PF03900 Porphobilinogen deaminase, C-terminal domain HQ395_00510 PF02602 Uroporphyrinogen-III synthase HemD HQ395_00515 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HQ395_00525 PF03692 Putative zinc- or iron-chelating domain HQ395_00530 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HQ395_00545 PF07715 TonB-dependent Receptor Plug Domain HQ395_00545 PF00593 TonB dependent receptor HQ395_00570 PF01638 HxlR-like helix-turn-helix HQ395_00575 PF08803 Putative mono-oxygenase ydhR HQ395_00590 PF06055 Exopolysaccharide synthesis, ExoD HQ395_00600 PF13808 DDE_Tnp_1-associated HQ395_00600 PF01609 Transposase DDE domain HQ395_00605 PF17151 Periplasmic sensor domain HQ395_00605 PF00990 Diguanylate cyclase, GGDEF domain HQ395_00620 PF13036 Peptidoglycan-synthase activator LpoB HQ395_00635 PF04055 Radical SAM superfamily HQ395_00635 PF06968 Biotin and Thiamin Synthesis associated domain HQ395_00640 PF05690 Thiazole biosynthesis protein ThiG HQ395_00650 PF00899 ThiF family HQ395_00655 PF02581 Thiamine monophosphate synthase HQ395_00660 PF13667 ThiC-associated domain HQ395_00660 PF01964 Radical SAM ThiC family HQ395_00665 PF01117 Aerolysin toxin HQ395_00665 PF03440 Aerolysin/Pertussis toxin (APT) domain HQ395_00680 PF00486 Transcriptional regulatory protein, C terminal HQ395_00680 PF00072 Response regulator receiver domain HQ395_00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_00695 PF08443 RimK-like ATP-grasp domain HQ395_00695 PF18030 RimK PreATP-grasp domain HQ395_00700 PF02310 B12 binding domain HQ395_00700 PF02607 B12 binding domain HQ395_00700 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ395_00700 PF00809 Pterin binding enzyme HQ395_00700 PF02574 Homocysteine S-methyltransferase HQ395_00705 PF00999 Sodium/hydrogen exchanger family HQ395_00720 PF08668 HDOD domain HQ395_00730 PF04228 Putative neutral zinc metallopeptidase HQ395_00735 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HQ395_00755 PF08447 PAS fold HQ395_00755 PF13426 PAS domain HQ395_00755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_00760 PF01740 STAS domain HQ395_00760 PF08678 Rsbr N terminal HQ395_00765 PF13581 Histidine kinase-like ATPase domain HQ395_00775 PF00072 Response regulator receiver domain HQ395_00785 PF07690 Major Facilitator Superfamily HQ395_00790 PF01914 MarC family integral membrane protein HQ395_00800 PF01523 Putative modulator of DNA gyrase HQ395_00805 PF00795 Carbon-nitrogen hydrolase HQ395_00820 PF13502 AsmA-like C-terminal region HQ395_00820 PF13116 Protein of unknown function HQ395_00825 PF00575 S1 RNA binding domain HQ395_00825 PF10150 Ribonuclease E/G family HQ395_00830 PF02545 Maf-like protein HQ395_00835 PF04093 rod shape-determining protein MreD HQ395_00840 PF04085 rod shape-determining protein MreC HQ395_00870 PF07963 Prokaryotic N-terminal methylation motif HQ395_00870 PF14245 Type IV pilin PilA HQ395_00880 PF07963 Prokaryotic N-terminal methylation motif HQ395_00890 PF00482 Type II secretion system (T2SS), protein F HQ395_00895 PF00437 Type II/IV secretion system protein HQ395_00895 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ395_00905 PF13401 AAA domain HQ395_00905 PF09077 Mu B transposition protein, C terminal HQ395_00910 PF00263 Bacterial type II and III secretion system protein HQ395_00910 PF03958 Bacterial type II/III secretion system short domain HQ395_00940 PF00563 EAL domain HQ395_00940 PF17157 Gammaproteobacterial periplasmic sensor domain HQ395_00940 PF00990 Diguanylate cyclase, GGDEF domain HQ395_00945 PF00563 EAL domain HQ395_00945 PF12792 CSS motif domain associated with EAL HQ395_00950 PF01699 Sodium/calcium exchanger protein HQ395_00955 PF00221 Aromatic amino acid lyase HQ395_00960 PF17391 Urocanase N-terminal domain HQ395_00960 PF17392 Urocanase C-terminal domain HQ395_00960 PF01175 Urocanase Rossmann-like domain HQ395_00965 PF00491 Arginase family HQ395_00970 PF01979 Amidohydrolase family HQ395_00975 PF07702 UTRA domain HQ395_00975 PF00392 Bacterial regulatory proteins, gntR family HQ395_00980 PF00484 Carbonic anhydrase HQ395_00985 PF04542 Sigma-70 region 2 HQ395_00985 PF00140 Sigma-70 factor, region 1.2 HQ395_00985 PF04545 Sigma-70, region 4 HQ395_00990 PF18075 FtsX extracellular domain HQ395_00995 PF00005 ABC transporter HQ395_01000 PF02881 SRP54-type protein, helical bundle domain HQ395_01000 PF00448 SRP54-type protein, GTPase domain HQ395_01020 PF00440 Bacterial regulatory proteins, tetR family HQ395_01030 PF13091 PLD-like domain HQ395_01040 PF01464 Transglycosylase SLT domain HQ395_01050 PF02416 mttA/Hcf106 family HQ395_01055 PF03466 LysR substrate binding domain HQ395_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_01060 PF01914 MarC family integral membrane protein HQ395_01065 PF10678 Protein of unknown function (DUF2492) HQ395_01070 PF00375 Sodium:dicarboxylate symporter family HQ395_01080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_01080 PF03466 LysR substrate binding domain HQ395_01085 PF13533 Biotin-lipoyl like HQ395_01090 PF07690 Major Facilitator Superfamily HQ395_01095 PF07947 YhhN family HQ395_01115 PF00326 Prolyl oligopeptidase family HQ395_01115 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ395_01130 PF00106 short chain dehydrogenase HQ395_01135 PF03466 LysR substrate binding domain HQ395_01135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_01140 PF02525 Flavodoxin-like fold HQ395_01145 PF00999 Sodium/hydrogen exchanger family HQ395_01145 PF02254 TrkA-N domain HQ395_01160 PF01695 IstB-like ATP binding protein HQ395_01165 PF00665 Integrase core domain HQ395_01200 PF01196 Ribosomal protein L17 HQ395_01205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HQ395_01205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HQ395_01205 PF01000 RNA polymerase Rpb3/RpoA insert domain HQ395_01210 PF00163 Ribosomal protein S4/S9 N-terminal domain HQ395_01210 PF01479 S4 domain HQ395_01215 PF00411 Ribosomal protein S11 HQ395_01220 PF00416 Ribosomal protein S13/S18 HQ395_01225 PF00444 Ribosomal protein L36 HQ395_01230 PF00344 SecY translocase HQ395_01235 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HQ395_01240 PF00327 Ribosomal protein L30p/L7e HQ395_01245 PF03719 Ribosomal protein S5, C-terminal domain HQ395_01245 PF00333 Ribosomal protein S5, N-terminal domain HQ395_01250 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HQ395_01255 PF00347 Ribosomal protein L6 HQ395_01260 PF00410 Ribosomal protein S8 HQ395_01265 PF00253 Ribosomal protein S14p/S29e HQ395_01270 PF00281 Ribosomal protein L5 HQ395_01270 PF00673 ribosomal L5P family C-terminus HQ395_01275 PF00467 KOW motif HQ395_01275 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HQ395_01280 PF00238 Ribosomal protein L14p/L23e HQ395_01285 PF00366 Ribosomal protein S17 HQ395_01290 PF00831 Ribosomal L29 protein HQ395_01295 PF00252 Ribosomal protein L16p/L10e HQ395_01300 PF07650 KH domain HQ395_01300 PF00189 Ribosomal protein S3, C-terminal domain HQ395_01305 PF00237 Ribosomal protein L22p/L17e HQ395_01310 PF00203 Ribosomal protein S19 HQ395_01315 PF00181 Ribosomal Proteins L2, RNA binding domain HQ395_01315 PF03947 Ribosomal Proteins L2, C-terminal domain HQ395_01320 PF00276 Ribosomal protein L23 HQ395_01325 PF00573 Ribosomal protein L4/L1 family HQ395_01330 PF00297 Ribosomal protein L3 HQ395_01335 PF00338 Ribosomal protein S10p/S20e HQ395_01345 PF00672 HAMP domain HQ395_01345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_01345 PF00512 His Kinase A (phospho-acceptor) domain HQ395_01350 PF00072 Response regulator receiver domain HQ395_01350 PF00486 Transcriptional regulatory protein, C terminal HQ395_01355 PF03449 Transcription elongation factor, N-terminal HQ395_01355 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ395_01360 PF16921 Tex protein YqgF-like domain HQ395_01360 PF17674 HHH domain HQ395_01360 PF09371 Tex-like protein N-terminal domain HQ395_01360 PF00575 S1 RNA binding domain HQ395_01380 PF00561 alpha/beta hydrolase fold HQ395_01385 PF00156 Phosphoribosyl transferase domain HQ395_01390 PF01106 NifU-like domain HQ395_01390 PF01521 Iron-sulphur cluster biosynthesis HQ395_01400 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HQ395_01400 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HQ395_01405 PF02556 Preprotein translocase subunit SecB HQ395_01410 PF00581 Rhodanese-like domain HQ395_01415 PF01676 Metalloenzyme superfamily HQ395_01415 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ395_01420 PF01551 Peptidase family M23 HQ395_01430 PF00356 Bacterial regulatory proteins, lacI family HQ395_01430 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ395_01435 PF01081 KDPG and KHG aldolase HQ395_01440 PF00920 Dehydratase family HQ395_01445 PF01202 Shikimate kinase HQ395_01450 PF02447 GntP family permease HQ395_01455 PF13091 PLD-like domain HQ395_01460 PF17191 RecG wedge domain HQ395_01460 PF00271 Helicase conserved C-terminal domain HQ395_01460 PF00270 DEAD/DEAH box helicase HQ395_01470 PF00583 Acetyltransferase (GNAT) family HQ395_01470 PF09500 Putative thioesterase (yiiD_Cterm) HQ395_01480 PF02580 D-Tyr-tRNA(Tyr) deacylase HQ395_01485 PF03631 Virulence factor BrkB HQ395_01490 PF00009 Elongation factor Tu GTP binding domain HQ395_01490 PF00679 Elongation factor G C-terminus HQ395_01490 PF03144 Elongation factor Tu domain 2 HQ395_01495 PF00120 Glutamine synthetase, catalytic domain HQ395_01495 PF03951 Glutamine synthetase, beta-Grasp domain HQ395_01505 PF00512 His Kinase A (phospho-acceptor) domain HQ395_01505 PF00989 PAS fold HQ395_01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_01510 PF02954 Bacterial regulatory protein, Fis family HQ395_01510 PF00072 Response regulator receiver domain HQ395_01510 PF00158 Sigma-54 interaction domain HQ395_01515 PF00962 Adenosine/AMP deaminase HQ395_01520 PF06969 HemN C-terminal domain HQ395_01520 PF04055 Radical SAM superfamily HQ395_01525 PF10675 Protein of unknown function (DUF2489) HQ395_01530 PF04220 Der GTPase activator (YihI) HQ395_01535 PF13808 DDE_Tnp_1-associated HQ395_01535 PF01609 Transposase DDE domain HQ395_01545 PF00034 Cytochrome c HQ395_01550 PF01926 50S ribosome-binding GTPase HQ395_01555 PF07369 Protein of unknown function (DUF1488) HQ395_01560 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HQ395_01560 PF01488 Shikimate / quinate 5-dehydrogenase HQ395_01560 PF08501 Shikimate dehydrogenase substrate binding domain HQ395_01565 PF01218 Coproporphyrinogen III oxidase HQ395_01570 PF01300 Telomere recombination HQ395_01575 PF00731 AIR carboxylase HQ395_01580 PF01396 Topoisomerase DNA binding C4 zinc finger HQ395_01585 PF04361 Protein of unknown function (DUF494) HQ395_01600 PF01327 Polypeptide deformylase HQ395_01605 PF00551 Formyl transferase HQ395_01605 PF02911 Formyl transferase, C-terminal domain HQ395_01610 PF01189 16S rRNA methyltransferase RsmB/F HQ395_01610 PF01029 NusB family HQ395_01615 PF02080 TrkA-C domain HQ395_01615 PF02254 TrkA-N domain HQ395_01620 PF02386 Cation transport protein HQ395_01625 PF02646 RmuC family HQ395_01640 PF02082 Transcriptional regulator HQ395_01645 PF00294 pfkB family carbohydrate kinase HQ395_01650 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ395_01650 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ395_01655 PF00958 GMP synthase C terminal domain HQ395_01655 PF02540 NAD synthase HQ395_01655 PF00117 Glutamine amidotransferase class-I HQ395_01660 PF00171 Aldehyde dehydrogenase family HQ395_01665 PF00202 Aminotransferase class-III HQ395_01670 PF07883 Cupin domain HQ395_01670 PF01381 Helix-turn-helix HQ395_01675 PF00171 Aldehyde dehydrogenase family HQ395_01685 PF00892 EamA-like transporter family HQ395_01690 PF12833 Helix-turn-helix domain HQ395_01695 PF01810 LysE type translocator HQ395_01700 PF00690 Cation transporter/ATPase, N-terminus HQ395_01700 PF00689 Cation transporting ATPase, C-terminus HQ395_01705 PF04143 Sulphur transport HQ395_01710 PF01810 LysE type translocator HQ395_01720 PF06206 CpeT/CpcT family (DUF1001) HQ395_01750 PF14001 YdfZ protein HQ395_01760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_01760 PF03466 LysR substrate binding domain HQ395_01775 PF13361 UvrD-like helicase C-terminal domain HQ395_01775 PF00580 UvrD/REP helicase N-terminal domain HQ395_01780 PF02608 ABC transporter substrate-binding protein PnrA-like HQ395_01785 PF00005 ABC transporter HQ395_01790 PF02653 Branched-chain amino acid transport system / permease component HQ395_01795 PF02653 Branched-chain amino acid transport system / permease component HQ395_01800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_01800 PF03466 LysR substrate binding domain HQ395_01805 PF00107 Zinc-binding dehydrogenase HQ395_01805 PF08240 Alcohol dehydrogenase GroES-like domain HQ395_01810 PF00756 Putative esterase HQ395_01820 PF12867 DinB superfamily HQ395_01820 PF03781 Sulfatase-modifying factor enzyme 1 HQ395_01825 PF13593 SBF-like CPA transporter family (DUF4137) HQ395_01835 PF01588 Putative tRNA binding domain HQ395_01840 PF13520 Amino acid permease HQ395_01845 PF04074 YhcH/YjgK/YiaL HQ395_01850 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ395_01850 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ395_01850 PF00703 Glycosyl hydrolases family 2 HQ395_01850 PF16353 Domain of unknown function(DUF4981) HQ395_01850 PF02929 Beta galactosidase small chain HQ395_01855 PF00356 Bacterial regulatory proteins, lacI family HQ395_01890 PF00132 Bacterial transferase hexapeptide (six repeats) HQ395_01895 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ395_01895 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ395_01895 PF00476 DNA polymerase family A HQ395_01895 PF01612 3'-5' exonuclease HQ395_01905 PF06005 Cell division protein ZapB HQ395_01915 PF06426 Serine acetyltransferase, N-terminal HQ395_01915 PF00132 Bacterial transferase hexapeptide (six repeats) HQ395_01920 PF01545 Cation efflux family HQ395_01920 PF16916 Dimerisation domain of Zinc Transporter HQ395_01925 PF00072 Response regulator receiver domain HQ395_01925 PF00486 Transcriptional regulatory protein, C terminal HQ395_01930 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ395_01930 PF00672 HAMP domain HQ395_01930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_01930 PF00512 His Kinase A (phospho-acceptor) domain HQ395_01935 PF00588 SpoU rRNA Methylase family HQ395_01940 PF01554 MatE HQ395_01945 PF02630 SCO1/SenC HQ395_01955 PF01726 LexA DNA binding domain HQ395_01955 PF00717 Peptidase S24-like HQ395_01960 PF01553 Acyltransferase HQ395_01965 PF01040 UbiA prenyltransferase family HQ395_01970 PF04345 Chorismate lyase HQ395_01990 PF08240 Alcohol dehydrogenase GroES-like domain HQ395_01990 PF00107 Zinc-binding dehydrogenase HQ395_01995 PF00356 Bacterial regulatory proteins, lacI family HQ395_01995 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ395_02000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ395_02010 PF03611 PTS system sugar-specific permease component HQ395_02015 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HQ395_02020 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ395_02025 PF00535 Glycosyl transferase family 2 HQ395_02030 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ395_02035 PF01467 Cytidylyltransferase-like HQ395_02040 PF04393 Protein of unknown function (DUF535) HQ395_02045 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HQ395_02045 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HQ395_02045 PF06827 Zinc finger found in FPG and IleRS HQ395_02055 PF00471 Ribosomal protein L33 HQ395_02060 PF00830 Ribosomal L28 family HQ395_02065 PF04002 RadC-like JAB domain HQ395_02070 PF02441 Flavoprotein HQ395_02070 PF04127 DNA / pantothenate metabolism flavoprotein HQ395_02075 PF00692 dUTPase HQ395_02080 PF00440 Bacterial regulatory proteins, tetR family HQ395_02085 PF05552 Conserved TM helix HQ395_02085 PF00924 Mechanosensitive ion channel HQ395_02095 PF00342 Phosphoglucose isomerase HQ395_02100 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HQ395_02100 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HQ395_02105 PF03466 LysR substrate binding domain HQ395_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_02120 PF00583 Acetyltransferase (GNAT) family HQ395_02120 PF13380 CoA binding domain HQ395_02120 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ395_02145 PF12724 Flavodoxin domain HQ395_02155 PF09186 Domain of unknown function (DUF1949) HQ395_02155 PF01205 Uncharacterized protein family UPF0029 HQ395_02160 PF00557 Metallopeptidase family M24 HQ395_02165 PF00501 AMP-binding enzyme HQ395_02165 PF13193 AMP-binding enzyme C-terminal domain HQ395_02170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ395_02170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ395_02170 PF00378 Enoyl-CoA hydratase/isomerase HQ395_02175 PF00108 Thiolase, N-terminal domain HQ395_02175 PF02803 Thiolase, C-terminal domain HQ395_02180 PF00486 Transcriptional regulatory protein, C terminal HQ395_02180 PF00072 Response regulator receiver domain HQ395_02185 PF00512 His Kinase A (phospho-acceptor) domain HQ395_02185 PF00672 HAMP domain HQ395_02185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_02190 PF01547 Bacterial extracellular solute-binding protein HQ395_02200 PF01206 Sulfurtransferase TusA HQ395_02205 PF01042 Endoribonuclease L-PSP HQ395_02210 PF13488 Glycine zipper HQ395_02210 PF00691 OmpA family HQ395_02215 PF02743 Cache domain HQ395_02215 PF00672 HAMP domain HQ395_02215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_02220 PF03352 Methyladenine glycosylase HQ395_02225 PF02091 Glycyl-tRNA synthetase alpha subunit HQ395_02230 PF05746 DALR anticodon binding domain HQ395_02230 PF02092 Glycyl-tRNA synthetase beta subunit HQ395_02260 PF03545 Yersinia virulence determinant (YopE) HQ395_02260 PF03496 ADP-ribosyltransferase exoenzyme HQ395_02265 PF05932 Tir chaperone protein (CesT) family HQ395_02275 PF03222 Tryptophan/tyrosine permease family HQ395_02280 PF12801 4Fe-4S binding domain HQ395_02290 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_02290 PF18113 Rubredoxin binding C-terminal domain HQ395_02295 PF00258 Flavodoxin HQ395_02295 PF00753 Metallo-beta-lactamase superfamily HQ395_02295 PF00301 Rubredoxin HQ395_02300 PF00158 Sigma-54 interaction domain HQ395_02300 PF01590 GAF domain HQ395_02305 PF00356 Bacterial regulatory proteins, lacI family HQ395_02310 PF13458 Periplasmic binding protein HQ395_02315 PF02653 Branched-chain amino acid transport system / permease component HQ395_02320 PF02653 Branched-chain amino acid transport system / permease component HQ395_02320 PF11862 Domain of unknown function (DUF3382) HQ395_02325 PF00005 ABC transporter HQ395_02325 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ395_02330 PF00005 ABC transporter HQ395_02345 PF00581 Rhodanese-like domain HQ395_02350 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HQ395_02350 PF01694 Rhomboid family HQ395_02355 PF12262 Bacterial virulence factor lipase N-terminal HQ395_02360 PF04380 Membrane fusogenic activity HQ395_02365 PF00175 Oxidoreductase NAD-binding domain HQ395_02370 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HQ395_02380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ395_02380 PF07498 Rho termination factor, N-terminal domain HQ395_02380 PF07497 Rho termination factor, RNA-binding domain HQ395_02385 PF00085 Thioredoxin HQ395_02390 PF00270 DEAD/DEAH box helicase HQ395_02390 PF00271 Helicase conserved C-terminal domain HQ395_02395 PF02541 Ppx/GppA phosphatase family HQ395_02410 PF04445 Putative SAM-dependent methyltransferase HQ395_02415 PF00563 EAL domain HQ395_02415 PF00990 Diguanylate cyclase, GGDEF domain HQ395_02415 PF03707 Bacterial signalling protein N terminal repeat HQ395_02420 PF01432 Peptidase family M3 HQ395_02425 PF00490 Delta-aminolevulinic acid dehydratase HQ395_02430 PF01026 TatD related DNase HQ395_02435 PF00902 Sec-independent protein translocase protein (TatC) HQ395_02440 PF02416 mttA/Hcf106 family HQ395_02445 PF02416 mttA/Hcf106 family HQ395_02450 PF03109 ABC1 family HQ395_02455 PF02036 SCP-2 sterol transfer family HQ395_02460 PF01209 ubiE/COQ5 methyltransferase family HQ395_02465 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HQ395_02470 PF07969 Amidohydrolase family HQ395_02515 PF03544 Gram-negative bacterial TonB protein C-terminal HQ395_02520 PF02472 Biopolymer transport protein ExbD/TolR HQ395_02525 PF01618 MotA/TolQ/ExbB proton channel family HQ395_02530 PF01618 MotA/TolQ/ExbB proton channel family HQ395_02540 PF00196 Bacterial regulatory proteins, luxR family HQ395_02540 PF03472 Autoinducer binding domain HQ395_02545 PF01380 SIS domain HQ395_02550 PF00455 DeoR C terminal sensor domain HQ395_02550 PF08220 DeoR-like helix-turn-helix domain HQ395_02555 PF00486 Transcriptional regulatory protein, C terminal HQ395_02555 PF00072 Response regulator receiver domain HQ395_02560 PF00512 His Kinase A (phospho-acceptor) domain HQ395_02560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_02560 PF00672 HAMP domain HQ395_02565 PF00905 Penicillin binding protein transpeptidase domain HQ395_02570 PF06123 Inner membrane protein CreD HQ395_02575 PF00132 Bacterial transferase hexapeptide (six repeats) HQ395_02575 PF14602 Hexapeptide repeat of succinyl-transferase HQ395_02575 PF12804 MobA-like NTP transferase domain HQ395_02580 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HQ395_02580 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HQ395_02585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ395_02585 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ395_02590 PF00231 ATP synthase HQ395_02595 PF00306 ATP synthase alpha/beta chain, C terminal domain HQ395_02595 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ395_02595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ395_02600 PF00213 ATP synthase delta (OSCP) subunit HQ395_02605 PF00430 ATP synthase B/B' CF(0) HQ395_02610 PF00137 ATP synthase subunit C HQ395_02615 PF00119 ATP synthase A chain HQ395_02625 PF02195 ParB-like nuclease domain HQ395_02625 PF17762 HTH domain found in ParB protein HQ395_02630 PF13614 AAA domain HQ395_02635 PF02527 rRNA small subunit methyltransferase G HQ395_02640 PF01134 Glucose inhibited division protein A HQ395_02640 PF13932 GidA associated domain HQ395_02645 PF00258 Flavodoxin HQ395_02650 PF07715 TonB-dependent Receptor Plug Domain HQ395_02650 PF00593 TonB dependent receptor HQ395_02655 PF00005 ABC transporter HQ395_02660 PF00005 ABC transporter HQ395_02665 PF01497 Periplasmic binding protein HQ395_02670 PF01032 FecCD transport family HQ395_02680 PF14849 YidC periplasmic domain HQ395_02680 PF02096 60Kd inner membrane protein HQ395_02685 PF01809 Putative membrane protein insertion efficiency factor HQ395_02690 PF00825 Ribonuclease P HQ395_02695 PF00468 Ribosomal protein L34 HQ395_02700 PF00005 ABC transporter HQ395_02705 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_02710 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_02715 PF11638 DnaA N-terminal domain HQ395_02715 PF08299 Bacterial dnaA protein helix-turn-helix HQ395_02715 PF00308 Bacterial dnaA protein HQ395_02720 PF02768 DNA polymerase III beta subunit, C-terminal domain HQ395_02720 PF02767 DNA polymerase III beta subunit, central domain HQ395_02720 PF00712 DNA polymerase III beta subunit, N-terminal domain HQ395_02725 PF02463 RecF/RecN/SMC N terminal domain HQ395_02730 PF00204 DNA gyrase B HQ395_02730 PF00986 DNA gyrase B subunit, carboxyl terminus HQ395_02730 PF18053 DNA gyrase B subunit insert domain HQ395_02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_02730 PF01751 Toprim domain HQ395_02740 PF08279 HTH domain HQ395_02740 PF13280 WYL domain HQ395_02745 PF00011 Hsp20/alpha crystallin family HQ395_02750 PF00011 Hsp20/alpha crystallin family HQ395_02755 PF00155 Aminotransferase class I and II HQ395_02770 PF07690 Major Facilitator Superfamily HQ395_02775 PF00486 Transcriptional regulatory protein, C terminal HQ395_02775 PF00072 Response regulator receiver domain HQ395_02780 PF13493 Domain of unknown function (DUF4118) HQ395_02780 PF02702 Osmosensitive K+ channel His kinase sensor domain HQ395_02780 PF13492 GAF domain HQ395_02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_02780 PF00512 His Kinase A (phospho-acceptor) domain HQ395_02785 PF02669 K+-transporting ATPase, c chain HQ395_02795 PF03814 Potassium-transporting ATPase A subunit HQ395_02800 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_02800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ395_02805 PF00512 His Kinase A (phospho-acceptor) domain HQ395_02805 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_02810 PF00873 AcrB/AcrD/AcrF family HQ395_02815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_02820 PF00440 Bacterial regulatory proteins, tetR family HQ395_02855 PF12146 Serine aminopeptidase, S33 HQ395_02860 PF00132 Bacterial transferase hexapeptide (six repeats) HQ395_02865 PF00588 SpoU rRNA Methylase family HQ395_02865 PF12105 SpoU, rRNA methylase, C-terminal HQ395_02870 PF13291 ACT domain HQ395_02870 PF04607 Region found in RelA / SpoT proteins HQ395_02870 PF02824 TGS domain HQ395_02875 PF01192 RNA polymerase Rpb6 HQ395_02880 PF00625 Guanylate kinase HQ395_02885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ395_02900 PF00892 EamA-like transporter family HQ395_02920 PF03466 LysR substrate binding domain HQ395_02920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_02925 PF00579 tRNA synthetases class I (W and Y) HQ395_02930 PF00582 Universal stress protein family HQ395_02935 PF07055 Enoyl reductase FAD binding domain HQ395_02935 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ395_02935 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ395_02940 PF00990 Diguanylate cyclase, GGDEF domain HQ395_02945 PF00210 Ferritin-like domain HQ395_02955 PF07690 Major Facilitator Superfamily HQ395_02960 PF01810 LysE type translocator HQ395_02965 PF07694 5TMR of 5TMR-LYT HQ395_02965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_02965 PF06580 Histidine kinase HQ395_02970 PF00072 Response regulator receiver domain HQ395_02970 PF04397 LytTr DNA-binding domain HQ395_02975 PF07690 Major Facilitator Superfamily HQ395_02980 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HQ395_02980 PF02222 ATP-grasp domain HQ395_02985 PF00731 AIR carboxylase HQ395_03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_03000 PF03466 LysR substrate binding domain HQ395_03005 PF07715 TonB-dependent Receptor Plug Domain HQ395_03005 PF00593 TonB dependent receptor HQ395_03010 PF01177 Asp/Glu/Hydantoin racemase HQ395_03045 PF00899 ThiF family HQ395_03050 PF02657 Fe-S metabolism associated domain HQ395_03055 PF00266 Aminotransferase class-V HQ395_03060 PF00580 UvrD/REP helicase N-terminal domain HQ395_03060 PF13361 UvrD-like helicase C-terminal domain HQ395_03065 PF03707 Bacterial signalling protein N terminal repeat HQ395_03065 PF00563 EAL domain HQ395_03065 PF00990 Diguanylate cyclase, GGDEF domain HQ395_03070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ395_03075 PF00107 Zinc-binding dehydrogenase HQ395_03075 PF08240 Alcohol dehydrogenase GroES-like domain HQ395_03080 PF00155 Aminotransferase class I and II HQ395_03085 PF08360 QacR-like protein, C-terminal region HQ395_03085 PF00440 Bacterial regulatory proteins, tetR family HQ395_03090 PF01370 NAD dependent epimerase/dehydratase family HQ395_03105 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HQ395_03125 PF08340 Domain of unknown function (DUF1732) HQ395_03125 PF03755 YicC-like family, N-terminal region HQ395_03130 PF03725 3' exoribonuclease family, domain 2 HQ395_03130 PF01138 3' exoribonuclease family, domain 1 HQ395_03135 PF00156 Phosphoribosyl transferase domain HQ395_03140 PF00403 Heavy-metal-associated domain HQ395_03145 PF00376 MerR family regulatory protein HQ395_03145 PF09278 MerR, DNA binding HQ395_03150 PF01590 GAF domain HQ395_03150 PF00563 EAL domain HQ395_03150 PF00990 Diguanylate cyclase, GGDEF domain HQ395_03150 PF00360 Phytochrome region HQ395_03155 PF06288 Protein of unknown function (DUF1040) HQ395_03160 PF13746 4Fe-4S dicluster domain HQ395_03160 PF12801 4Fe-4S binding domain HQ395_03160 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HQ395_03165 PF01636 Phosphotransferase enzyme family HQ395_03170 PF01323 DSBA-like thioredoxin domain HQ395_03175 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HQ395_03175 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HQ395_03180 PF00857 Isochorismatase family HQ395_03190 PF04463 Protein of unknown function (DUF523) HQ395_03195 PF01553 Acyltransferase HQ395_03200 PF01553 Acyltransferase HQ395_03205 PF13335 Magnesium chelatase, subunit ChlI C-terminal HQ395_03205 PF01078 Magnesium chelatase, subunit ChlI HQ395_03210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ395_03210 PF00205 Thiamine pyrophosphate enzyme, central domain HQ395_03210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ395_03220 PF01063 Amino-transferase class IV HQ395_03225 PF00920 Dehydratase family HQ395_03235 PF01389 OmpA-like transmembrane domain HQ395_03235 PF00691 OmpA family HQ395_03245 PF00271 Helicase conserved C-terminal domain HQ395_03245 PF00270 DEAD/DEAH box helicase HQ395_03245 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HQ395_03245 PF18074 Primosomal protein N C-terminal domain HQ395_03245 PF17764 3′ DNA-binding domain (3′BD) HQ395_03250 PF01197 Ribosomal protein L31 HQ395_03255 PF11066 Protein of unknown function (DUF2867) HQ395_03255 PF13460 NAD(P)H-binding HQ395_03260 PF03949 Malic enzyme, NAD binding domain HQ395_03260 PF00390 Malic enzyme, N-terminal domain HQ395_03270 PF00512 His Kinase A (phospho-acceptor) domain HQ395_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_03270 PF00672 HAMP domain HQ395_03275 PF00486 Transcriptional regulatory protein, C terminal HQ395_03275 PF00072 Response regulator receiver domain HQ395_03280 PF05958 tRNA (Uracil-5-)-methyltransferase HQ395_03295 PF02903 Alpha amylase, N-terminal ig-like domain HQ395_03295 PF00128 Alpha amylase, catalytic domain HQ395_03310 PF00012 Hsp70 protein HQ395_03315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ395_03315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ395_03320 PF05981 CreA protein HQ395_03335 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ395_03340 PF00120 Glutamine synthetase, catalytic domain HQ395_03345 PF00202 Aminotransferase class-III HQ395_03350 PF13416 Bacterial extracellular solute-binding protein HQ395_03355 PF13416 Bacterial extracellular solute-binding protein HQ395_03360 PF08402 TOBE domain HQ395_03360 PF00005 ABC transporter HQ395_03365 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_03370 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_03375 PF03475 3-alpha domain HQ395_03375 PF03473 MOSC domain HQ395_03395 PF03061 Thioesterase superfamily HQ395_03400 PF00570 HRDC domain HQ395_03400 PF00270 DEAD/DEAH box helicase HQ395_03400 PF00271 Helicase conserved C-terminal domain HQ395_03400 PF09382 RQC domain HQ395_03400 PF16124 RecQ zinc-binding HQ395_03405 PF00034 Cytochrome c HQ395_03410 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HQ395_03420 PF02592 Putative vitamin uptake transporter HQ395_03425 PF03737 Aldolase/RraA HQ395_03430 PF00672 HAMP domain HQ395_03430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_03435 PF03448 MgtE intracellular N domain HQ395_03435 PF01769 Divalent cation transporter HQ395_03435 PF00571 CBS domain HQ395_03440 PF14824 Sirohaem biosynthesis protein central HQ395_03440 PF10414 Sirohaem synthase dimerisation region HQ395_03440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ395_03445 PF01226 Formate/nitrite transporter HQ395_03450 PF13806 Rieske-like [2Fe-2S] domain HQ395_03455 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_03455 PF04324 BFD-like [2Fe-2S] binding domain HQ395_03455 PF18267 Rubredoxin NAD+ reductase C-terminal domain HQ395_03455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ395_03455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ395_03470 PF00005 ABC transporter HQ395_03475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_03485 PF03466 LysR substrate binding domain HQ395_03490 PF07690 Major Facilitator Superfamily HQ395_03495 PF10431 C-terminal, D2-small domain, of ClpB protein HQ395_03495 PF07724 AAA domain (Cdc48 subfamily) HQ395_03495 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_03500 PF00227 Proteasome subunit HQ395_03510 PF00750 tRNA synthetases class I (R) HQ395_03510 PF05746 DALR anticodon binding domain HQ395_03510 PF03485 Arginyl tRNA synthetase N terminal domain HQ395_03520 PF04545 Sigma-70, region 4 HQ395_03520 PF04542 Sigma-70 region 2 HQ395_03525 PF12973 ChrR Cupin-like domain HQ395_03530 PF02673 Bacitracin resistance protein BacA HQ395_03535 PF00248 Aldo/keto reductase family HQ395_03540 PF01263 Aldose 1-epimerase HQ395_03545 PF08544 GHMP kinases C terminal HQ395_03545 PF10509 Galactokinase galactose-binding signature HQ395_03545 PF00288 GHMP kinases N terminal domain HQ395_03550 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ395_03550 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ395_03555 PF16363 GDP-mannose 4,6 dehydratase HQ395_03560 PF00356 Bacterial regulatory proteins, lacI family HQ395_03565 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ395_03565 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ395_03565 PF00703 Glycosyl hydrolases family 2 HQ395_03565 PF02929 Beta galactosidase small chain HQ395_03565 PF16353 Domain of unknown function(DUF4981) HQ395_03570 PF13407 Periplasmic binding protein domain HQ395_03575 PF00005 ABC transporter HQ395_03580 PF02653 Branched-chain amino acid transport system / permease component HQ395_03585 PF02743 Cache domain HQ395_03585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_03585 PF00672 HAMP domain HQ395_03610 PF00696 Amino acid kinase family HQ395_03615 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ395_03615 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ395_03620 PF03606 C4-dicarboxylate anaerobic carrier HQ395_03625 PF02863 Arginine repressor, C-terminal domain HQ395_03625 PF01316 Arginine repressor, DNA binding domain HQ395_03630 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HQ395_03630 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HQ395_03635 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ395_03635 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ395_03655 PF02666 Phosphatidylserine decarboxylase HQ395_03665 PF02743 Cache domain HQ395_03665 PF00672 HAMP domain HQ395_03665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_03670 PF08212 Lipocalin-like domain HQ395_03675 PF12833 Helix-turn-helix domain HQ395_03675 PF06719 AraC-type transcriptional regulator N-terminus HQ395_03680 PF00465 Iron-containing alcohol dehydrogenase HQ395_03685 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HQ395_03685 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ395_03685 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ395_03690 PF02233 NAD(P) transhydrogenase beta subunit HQ395_03700 PF03313 Serine dehydratase alpha chain HQ395_03705 PF00375 Sodium:dicarboxylate symporter family HQ395_03710 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_03710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ395_03715 PF13525 Outer membrane lipoprotein HQ395_03720 PF01479 S4 domain HQ395_03720 PF00849 RNA pseudouridylate synthase HQ395_03725 PF02578 Multi-copper polyphenol oxidoreductase laccase HQ395_03730 PF02861 Clp amino terminal domain, pathogenicity island component HQ395_03730 PF07724 AAA domain (Cdc48 subfamily) HQ395_03730 PF10431 C-terminal, D2-small domain, of ClpB protein HQ395_03730 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_03730 PF17871 AAA lid domain HQ395_03740 PF03590 Aspartate-ammonia ligase HQ395_03745 PF01037 Lrp/AsnC ligand binding domain HQ395_03755 PF10063 Uncharacterized integral membrane protein (DUF2301) HQ395_03760 PF00478 IMP dehydrogenase / GMP reductase domain HQ395_03760 PF00571 CBS domain HQ395_03780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_03780 PF00512 His Kinase A (phospho-acceptor) domain HQ395_03790 PF00158 Sigma-54 interaction domain HQ395_03790 PF00072 Response regulator receiver domain HQ395_03795 PF06496 Protein of unknown function (DUF1097) HQ395_03800 PF00174 Oxidoreductase molybdopterin binding domain HQ395_03805 PF01794 Ferric reductase like transmembrane component HQ395_03820 PF00486 Transcriptional regulatory protein, C terminal HQ395_03820 PF00072 Response regulator receiver domain HQ395_03825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_03835 PF01568 Molydopterin dinucleotide binding domain HQ395_03835 PF18364 Molybdopterin oxidoreductase N-terminal domain HQ395_03835 PF00384 Molybdopterin oxidoreductase HQ395_03840 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ395_03845 PF01751 Toprim domain HQ395_03845 PF01131 DNA topoisomerase HQ395_03860 PF12852 Cupin HQ395_03860 PF12833 Helix-turn-helix domain HQ395_03865 PF02386 Cation transport protein HQ395_03870 PF02080 TrkA-C domain HQ395_03870 PF02254 TrkA-N domain HQ395_03875 PF01565 FAD binding domain HQ395_03875 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HQ395_03880 PF03099 Biotin/lipoate A/B protein ligase family HQ395_03880 PF08279 HTH domain HQ395_03880 PF02237 Biotin protein ligase C terminal domain HQ395_03885 PF00485 Phosphoribulokinase / Uridine kinase family HQ395_03900 PF03143 Elongation factor Tu C-terminal domain HQ395_03900 PF03144 Elongation factor Tu domain 2 HQ395_03900 PF00009 Elongation factor Tu GTP binding domain HQ395_03910 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HQ395_03915 PF02357 Transcription termination factor nusG HQ395_03915 PF00467 KOW motif HQ395_03920 PF00298 Ribosomal protein L11, RNA binding domain HQ395_03920 PF03946 Ribosomal protein L11, N-terminal domain HQ395_03925 PF00687 Ribosomal protein L1p/L10e family HQ395_03930 PF00466 Ribosomal protein L10 HQ395_03935 PF00542 Ribosomal protein L7/L12 C-terminal domain HQ395_03935 PF16320 Ribosomal protein L7/L12 dimerisation domain HQ395_03940 PF04565 RNA polymerase Rpb2, domain 3 HQ395_03940 PF10385 RNA polymerase beta subunit external 1 domain HQ395_03940 PF04561 RNA polymerase Rpb2, domain 2 HQ395_03940 PF04563 RNA polymerase beta subunit HQ395_03940 PF04560 RNA polymerase Rpb2, domain 7 HQ395_03940 PF00562 RNA polymerase Rpb2, domain 6 HQ395_03945 PF04997 RNA polymerase Rpb1, domain 1 HQ395_03945 PF00623 RNA polymerase Rpb1, domain 2 HQ395_03945 PF04983 RNA polymerase Rpb1, domain 3 HQ395_03945 PF05000 RNA polymerase Rpb1, domain 4 HQ395_03945 PF04998 RNA polymerase Rpb1, domain 5 HQ395_03950 PF13309 HTH domain HQ395_03950 PF08348 YheO-like PAS domain HQ395_03955 PF01042 Endoribonuclease L-PSP HQ395_03960 PF02635 DsrE/DsrF-like family HQ395_03965 PF02635 DsrE/DsrF-like family HQ395_03970 PF04077 DsrH like protein HQ395_03975 PF00164 Ribosomal protein S12/S23 HQ395_03980 PF00177 Ribosomal protein S7p/S5e HQ395_03985 PF00009 Elongation factor Tu GTP binding domain HQ395_03985 PF14492 Elongation Factor G, domain II HQ395_03985 PF03144 Elongation factor Tu domain 2 HQ395_03985 PF00679 Elongation factor G C-terminus HQ395_03985 PF03764 Elongation factor G, domain IV HQ395_03990 PF03143 Elongation factor Tu C-terminal domain HQ395_03990 PF03144 Elongation factor Tu domain 2 HQ395_03990 PF00009 Elongation factor Tu GTP binding domain HQ395_04035 PF00860 Permease family HQ395_04040 PF02733 Dak1 domain HQ395_04045 PF02734 DAK2 domain HQ395_04050 PF03610 PTS system fructose IIA component HQ395_04050 PF05524 PEP-utilising enzyme, N-terminal HQ395_04050 PF00391 PEP-utilising enzyme, mobile domain HQ395_04050 PF00381 PTS HPr component phosphorylation site HQ395_04055 PF00465 Iron-containing alcohol dehydrogenase HQ395_04060 PF00989 PAS fold HQ395_04060 PF02954 Bacterial regulatory protein, Fis family HQ395_04060 PF00158 Sigma-54 interaction domain HQ395_04065 PF03466 LysR substrate binding domain HQ395_04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_04070 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ395_04080 PF01594 AI-2E family transporter HQ395_04085 PF00293 NUDIX domain HQ395_04110 PF00199 Catalase HQ395_04110 PF06628 Catalase-related immune-responsive HQ395_04115 PF00583 Acetyltransferase (GNAT) family HQ395_04135 PF00990 Diguanylate cyclase, GGDEF domain HQ395_04155 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_04170 PF00392 Bacterial regulatory proteins, gntR family HQ395_04170 PF07702 UTRA domain HQ395_04180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_04180 PF03466 LysR substrate binding domain HQ395_04190 PF17954 Quercetinase C-terminal cupin domain HQ395_04190 PF02678 Pirin HQ395_04195 PF07681 DoxX HQ395_04200 PF17946 RecC C-terminal domain HQ395_04205 PF13361 UvrD-like helicase C-terminal domain HQ395_04205 PF00580 UvrD/REP helicase N-terminal domain HQ395_04205 PF12705 PD-(D/E)XK nuclease superfamily HQ395_04210 PF13538 UvrD-like helicase C-terminal domain HQ395_04220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ395_04230 PF00990 Diguanylate cyclase, GGDEF domain HQ395_04240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_04240 PF00672 HAMP domain HQ395_04260 PF00072 Response regulator receiver domain HQ395_04260 PF00486 Transcriptional regulatory protein, C terminal HQ395_04265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_04265 PF00672 HAMP domain HQ395_04265 PF00512 His Kinase A (phospho-acceptor) domain HQ395_04270 PF00990 Diguanylate cyclase, GGDEF domain HQ395_04270 PF08448 PAS fold HQ395_04275 PF00593 TonB dependent receptor HQ395_04275 PF07715 TonB-dependent Receptor Plug Domain HQ395_04280 PF00313 'Cold-shock' DNA-binding domain HQ395_04290 PF16916 Dimerisation domain of Zinc Transporter HQ395_04290 PF01545 Cation efflux family HQ395_04300 PF00436 Single-strand binding protein family HQ395_04305 PF00196 Bacterial regulatory proteins, luxR family HQ395_04310 PF17755 UvrA DNA-binding domain HQ395_04310 PF17760 UvrA interaction domain HQ395_04310 PF00005 ABC transporter HQ395_04315 PF00990 Diguanylate cyclase, GGDEF domain HQ395_04320 PF03922 OmpW family HQ395_04325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_04325 PF00672 HAMP domain HQ395_04340 PF02219 Methylenetetrahydrofolate reductase HQ395_04350 PF03594 Benzoate membrane transport protein HQ395_04355 PF01381 Helix-turn-helix HQ395_04355 PF07883 Cupin domain HQ395_04385 PF04363 Protein of unknown function (DUF496) HQ395_04395 PF04751 Protein of unknown function (DUF615) HQ395_04400 PF01523 Putative modulator of DNA gyrase HQ395_04405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ395_04410 PF01722 BolA-like protein HQ395_04420 PF05494 MlaC protein HQ395_04425 PF02470 MlaD protein HQ395_04430 PF02405 Permease MlaE HQ395_04435 PF00005 ABC transporter HQ395_04440 PF00571 CBS domain HQ395_04440 PF01380 SIS domain HQ395_04450 PF06835 Lipopolysaccharide-assembly, LptC-related HQ395_04455 PF03968 OstA-like protein HQ395_04460 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ395_04460 PF00005 ABC transporter HQ395_04465 PF04552 Sigma-54, DNA binding domain HQ395_04465 PF04963 Sigma-54 factor, core binding domain HQ395_04465 PF00309 Sigma-54 factor, Activator interacting domain (AID) HQ395_04470 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ395_04475 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ395_04480 PF03668 P-loop ATPase protein family HQ395_04485 PF00381 PTS HPr component phosphorylation site HQ395_04490 PF08279 HTH domain HQ395_04490 PF05043 Mga helix-turn-helix domain HQ395_04490 PF00874 PRD domain HQ395_04490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ395_04495 PF07071 KDGP aldolase HQ395_04500 PF03841 L-seryl-tRNA selenium transferase HQ395_04505 PF01979 Amidohydrolase family HQ395_04535 PF13180 PDZ domain HQ395_04540 PF00595 PDZ domain HQ395_04540 PF13180 PDZ domain HQ395_04550 PF03969 AFG1-like ATPase HQ395_04555 PF00572 Ribosomal protein L13 HQ395_04560 PF00380 Ribosomal protein S9/S16 HQ395_04565 PF00355 Rieske [2Fe-2S] domain HQ395_04565 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HQ395_04570 PF00033 Cytochrome b/b6/petB HQ395_04570 PF00032 Cytochrome b(C-terminal)/b6/petD HQ395_04575 PF02167 Cytochrome C1 family HQ395_04580 PF00043 Glutathione S-transferase, C-terminal domain HQ395_04580 PF02798 Glutathione S-transferase, N-terminal domain HQ395_04585 PF04386 Stringent starvation protein B HQ395_04590 PF04972 BON domain HQ395_04595 PF13580 SIS domain HQ395_04600 PF02021 Uncharacterised protein family UPF0102 HQ395_04605 PF04348 LppC putative lipoprotein HQ395_04610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ395_04625 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ395_04630 PF00813 FliP family HQ395_04635 PF01313 Bacterial export proteins, family 3 HQ395_04640 PF01311 Bacterial export proteins, family 1 HQ395_04650 PF00771 FHIPEP family HQ395_04655 PF02954 Bacterial regulatory protein, Fis family HQ395_04655 PF00072 Response regulator receiver domain HQ395_04655 PF00158 Sigma-54 interaction domain HQ395_04660 PF02049 Flagellar hook-basal body complex protein FliE HQ395_04665 PF08345 Flagellar M-ring protein C-terminal HQ395_04665 PF01514 Secretory protein of YscJ/FliF family HQ395_04670 PF01706 FliG C-terminal domain HQ395_04670 PF14841 FliG middle domain HQ395_04670 PF14842 FliG N-terminal domain HQ395_04680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ395_04680 PF18269 T3SS EscN ATPase C-terminal domain HQ395_04705 PF00460 Flagella basal body rod protein HQ395_04710 PF00460 Flagella basal body rod protein HQ395_04710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_04715 PF13861 FlgD Tudor-like domain HQ395_04715 PF03963 Flagellar hook capping protein - N-terminal region HQ395_04715 PF13860 FlgD Ig-like domain HQ395_04720 PF07559 Flagellar basal body protein FlaE HQ395_04720 PF00460 Flagella basal body rod protein HQ395_04720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_04725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_04725 PF00460 Flagella basal body rod protein HQ395_04730 PF00460 Flagella basal body rod protein HQ395_04730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_04735 PF02107 Flagellar L-ring protein HQ395_04740 PF02119 Flagellar P-ring protein HQ395_04750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_04750 PF00460 Flagella basal body rod protein HQ395_04755 PF00669 Bacterial flagellin N-terminal helical region HQ395_04770 PF00669 Bacterial flagellin N-terminal helical region HQ395_04770 PF00700 Bacterial flagellin C-terminal helical region HQ395_04775 PF00669 Bacterial flagellin N-terminal helical region HQ395_04775 PF00700 Bacterial flagellin C-terminal helical region HQ395_04780 PF02465 Flagellar hook-associated protein 2 N-terminus HQ395_04780 PF07195 Flagellar hook-associated protein 2 C-terminus HQ395_04780 PF07196 Flagellin hook IN motif HQ395_04785 PF02561 Flagellar protein FliS HQ395_04805 PF04545 Sigma-70, region 4 HQ395_04805 PF04542 Sigma-70 region 2 HQ395_04810 PF01618 MotA/TolQ/ExbB proton channel family HQ395_04815 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ395_04815 PF00691 OmpA family HQ395_04825 PF01476 LysM domain HQ395_04825 PF01464 Transglycosylase SLT domain HQ395_04835 PF02381 MraZ protein, putative antitoxin-like HQ395_04840 PF01795 MraW methylase family HQ395_04845 PF04999 Cell division protein FtsL HQ395_04850 PF03717 Penicillin-binding Protein dimerisation domain HQ395_04850 PF00905 Penicillin binding protein transpeptidase domain HQ395_04855 PF08245 Mur ligase middle domain HQ395_04855 PF01225 Mur ligase family, catalytic domain HQ395_04855 PF02875 Mur ligase family, glutamate ligase domain HQ395_04860 PF01225 Mur ligase family, catalytic domain HQ395_04860 PF02875 Mur ligase family, glutamate ligase domain HQ395_04860 PF08245 Mur ligase middle domain HQ395_04865 PF00953 Glycosyl transferase family 4 HQ395_04865 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HQ395_04870 PF08245 Mur ligase middle domain HQ395_04870 PF02875 Mur ligase family, glutamate ligase domain HQ395_04875 PF01098 Cell cycle protein HQ395_04880 PF04101 Glycosyltransferase family 28 C-terminal domain HQ395_04880 PF03033 Glycosyltransferase family 28 N-terminal domain HQ395_04885 PF01225 Mur ligase family, catalytic domain HQ395_04885 PF02875 Mur ligase family, glutamate ligase domain HQ395_04885 PF08245 Mur ligase middle domain HQ395_04890 PF03799 Cell division protein FtsQ HQ395_04890 PF08478 POTRA domain, FtsQ-type HQ395_04895 PF02491 SHS2 domain inserted in FTSA HQ395_04900 PF12327 FtsZ family, C-terminal domain HQ395_04900 PF00091 Tubulin/FtsZ family, GTPase domain HQ395_04905 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HQ395_04915 PF01043 SecA preprotein cross-linking domain HQ395_04915 PF07516 SecA Wing and Scaffold domain HQ395_04915 PF02810 SEC-C motif HQ395_04915 PF07517 SecA DEAD-like domain HQ395_04925 PF00293 NUDIX domain HQ395_04930 PF03884 DNA gyrase inhibitor YacG HQ395_04935 PF07072 Cell division protein HQ395_04940 PF01121 Dephospho-CoA kinase HQ395_04945 PF06750 Bacterial Peptidase A24 N-terminal domain HQ395_04945 PF01478 Type IV leader peptidase family HQ395_04950 PF00482 Type II secretion system (T2SS), protein F HQ395_04955 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ395_04955 PF00437 Type II/IV secretion system protein HQ395_04960 PF07963 Prokaryotic N-terminal methylation motif HQ395_04965 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HQ395_04965 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HQ395_04975 PF01510 N-acetylmuramoyl-L-alanine amidase HQ395_04980 PF07729 FCD domain HQ395_04980 PF00392 Bacterial regulatory proteins, gntR family HQ395_04985 PF00456 Transketolase, thiamine diphosphate binding domain HQ395_04985 PF17831 Pyruvate dehydrogenase E1 component middle domain HQ395_04990 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ395_04990 PF00364 Biotin-requiring enzyme HQ395_04990 PF02817 e3 binding domain HQ395_04995 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_04995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ395_05005 PF12729 Four helix bundle sensory module for signal transduction HQ395_05005 PF00672 HAMP domain HQ395_05005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_05010 PF12729 Four helix bundle sensory module for signal transduction HQ395_05010 PF00672 HAMP domain HQ395_05010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_05015 PF01734 Patatin-like phospholipase HQ395_05020 PF00330 Aconitase family (aconitate hydratase) HQ395_05020 PF06434 Aconitate hydratase 2 N-terminus HQ395_05020 PF11791 Aconitate B N-terminal domain HQ395_05025 PF12792 CSS motif domain associated with EAL HQ395_05025 PF00563 EAL domain HQ395_05030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_05030 PF03466 LysR substrate binding domain HQ395_05035 PF01810 LysE type translocator HQ395_05040 PF04030 D-arabinono-1,4-lactone oxidase HQ395_05040 PF01565 FAD binding domain HQ395_05045 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ395_05045 PF07683 Cobalamin synthesis protein cobW C-terminal domain HQ395_05050 PF07690 Major Facilitator Superfamily HQ395_05060 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ395_05065 PF02152 Dihydroneopterin aldolase HQ395_05070 PF02660 Glycerol-3-phosphate acyltransferase HQ395_05110 PF07670 Nucleoside recognition HQ395_05115 PF01584 CheW-like domain HQ395_05115 PF00072 Response regulator receiver domain HQ395_05125 PF08351 Domain of unknown function (DUF1726) HQ395_05125 PF13718 GNAT acetyltransferase 2 HQ395_05125 PF05127 Helicase HQ395_05125 PF17176 tRNA-binding domain HQ395_05140 PF00210 Ferritin-like domain HQ395_05150 PF02142 MGS-like domain HQ395_05165 PF17763 Glutaminase/Asparaginase C-terminal domain HQ395_05165 PF00710 Asparaginase, N-terminal HQ395_05180 PF00356 Bacterial regulatory proteins, lacI family HQ395_05185 PF00367 phosphotransferase system, EIIB HQ395_05185 PF02378 Phosphotransferase system, EIIC HQ395_05190 PF00128 Alpha amylase, catalytic domain HQ395_05190 PF11941 Domain of unknown function (DUF3459) HQ395_05195 PF14602 Hexapeptide repeat of succinyl-transferase HQ395_05195 PF12464 Maltose acetyltransferase HQ395_05200 PF01037 Lrp/AsnC ligand binding domain HQ395_05205 PF00892 EamA-like transporter family HQ395_05215 PF00171 Aldehyde dehydrogenase family HQ395_05220 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_05225 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_05230 PF08402 TOBE domain HQ395_05230 PF00005 ABC transporter HQ395_05235 PF13416 Bacterial extracellular solute-binding protein HQ395_05240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_05240 PF03466 LysR substrate binding domain HQ395_05245 PF03553 Na+/H+ antiporter family HQ395_05285 PF00534 Glycosyl transferases group 1 HQ395_05285 PF08323 Starch synthase catalytic domain HQ395_05290 PF00483 Nucleotidyl transferase HQ395_05295 PF05175 Methyltransferase small domain HQ395_05295 PF08468 Methyltransferase small domain N-terminal HQ395_05300 PF00701 Dihydrodipicolinate synthetase family HQ395_05305 PF00360 Phytochrome region HQ395_05305 PF00563 EAL domain HQ395_05305 PF01590 GAF domain HQ395_05305 PF00990 Diguanylate cyclase, GGDEF domain HQ395_05315 PF13419 Haloacid dehalogenase-like hydrolase HQ395_05320 PF17209 Hfq protein HQ395_05325 PF04403 Paraquat-inducible protein A HQ395_05330 PF02470 MlaD protein HQ395_05335 PF03886 ABC-type transport auxiliary lipoprotein component HQ395_05340 PF00691 OmpA family HQ395_05340 PF01389 OmpA-like transmembrane domain HQ395_05355 PF04076 Bacterial OB fold (BOF) protein HQ395_05360 PF01464 Transglycosylase SLT domain HQ395_05360 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HQ395_05365 PF04362 Bacterial Fe(2+) trafficking HQ395_05370 PF10576 Iron-sulfur binding domain of endonuclease III HQ395_05370 PF00633 Helix-hairpin-helix motif HQ395_05370 PF14815 NUDIX domain HQ395_05370 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ395_05375 PF16537 Type II secretion system protein B HQ395_05380 PF01471 Putative peptidoglycan binding domain HQ395_05380 PF13401 AAA domain HQ395_05385 PF01743 Poly A polymerase head domain HQ395_05385 PF01966 HD domain HQ395_05385 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ395_05400 PF04172 LrgB-like family HQ395_05405 PF03788 LrgA family HQ395_05410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_05410 PF03466 LysR substrate binding domain HQ395_05435 PF07350 Protein of unknown function (DUF1479) HQ395_05440 PF04073 Aminoacyl-tRNA editing domain HQ395_05445 PF01384 Phosphate transporter family HQ395_05450 PF01865 Protein of unknown function DUF47 HQ395_05465 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ395_05470 PF01467 Cytidylyltransferase-like HQ395_05470 PF00294 pfkB family carbohydrate kinase HQ395_05475 PF02321 Outer membrane efflux protein HQ395_05480 PF00293 NUDIX domain HQ395_05485 PF06853 Protein of unknown function (DUF1249) HQ395_05490 PF00149 Calcineurin-like phosphoesterase HQ395_05495 PF05728 Uncharacterised protein family (UPF0227) HQ395_05500 PF00293 NUDIX domain HQ395_05510 PF07869 Protein of unknown function (DUF1656) HQ395_05515 PF00529 HlyD membrane-fusion protein of T1SS HQ395_05515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_05520 PF04632 Fusaric acid resistance protein family HQ395_05525 PF00204 DNA gyrase B HQ395_05525 PF00986 DNA gyrase B subunit, carboxyl terminus HQ395_05525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_05525 PF01751 Toprim domain HQ395_05530 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ395_05530 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ395_05565 PF00226 DnaJ domain HQ395_05565 PF01556 DnaJ C terminal domain HQ395_05565 PF00684 DnaJ central domain HQ395_05570 PF00578 AhpC/TSA family HQ395_05590 PF01553 Acyltransferase HQ395_05595 PF04012 PspA/IM30 family HQ395_05610 PF01541 GIY-YIG catalytic domain HQ395_05620 PF00892 EamA-like transporter family HQ395_05625 PF03167 Uracil DNA glycosylase superfamily HQ395_05630 PF00892 EamA-like transporter family HQ395_05635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_05635 PF03466 LysR substrate binding domain HQ395_05640 PF00950 ABC 3 transport family HQ395_05645 PF00005 ABC transporter HQ395_05650 PF01297 Zinc-uptake complex component A periplasmic HQ395_05670 PF01476 LysM domain HQ395_05670 PF08525 Opacity-associated protein A N-terminal motif HQ395_05670 PF01551 Peptidase family M23 HQ395_05675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ395_05680 PF04222 Protein of unknown function (DUF416) HQ395_05695 PF02028 BCCT, betaine/carnitine/choline family transporter HQ395_05700 PF01624 MutS domain I HQ395_05700 PF05188 MutS domain II HQ395_05700 PF05192 MutS domain III HQ395_05700 PF05190 MutS family domain IV HQ395_05700 PF00488 MutS domain V HQ395_05750 PF02464 Competence-damaged protein HQ395_05755 PF00154 recA bacterial DNA recombination protein HQ395_05760 PF02631 RecX family HQ395_05765 PF02272 DHHA1 domain HQ395_05765 PF01411 tRNA synthetases class II (A) HQ395_05765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ395_05770 PF00696 Amino acid kinase family HQ395_05770 PF01842 ACT domain HQ395_05770 PF13840 ACT domain HQ395_05775 PF02599 Global regulator protein family HQ395_05810 PF00768 D-alanyl-D-alanine carboxypeptidase HQ395_05815 PF09335 SNARE associated Golgi protein HQ395_05820 PF00571 CBS domain HQ395_05820 PF03471 Transporter associated domain HQ395_05820 PF01595 Cyclin M transmembrane N-terminal domain HQ395_05825 PF10458 Valyl tRNA synthetase tRNA binding arm HQ395_05825 PF00133 tRNA synthetases class I (I, L, M and V) HQ395_05825 PF08264 Anticodon-binding domain of tRNA HQ395_05830 PF04364 DNA polymerase III chi subunit, HolC HQ395_05835 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ395_05835 PF00883 Cytosol aminopeptidase family, catalytic domain HQ395_05840 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ395_05845 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ395_05860 PF00909 Ammonium Transporter Family HQ395_05865 PF05958 tRNA (Uracil-5-)-methyltransferase HQ395_05865 PF01938 TRAM domain HQ395_05875 PF07963 Prokaryotic N-terminal methylation motif HQ395_05880 PF01026 TatD related DNase HQ395_05885 PF01773 Na+ dependent nucleoside transporter N-terminus HQ395_05885 PF07662 Na+ dependent nucleoside transporter C-terminus HQ395_05885 PF07670 Nucleoside recognition HQ395_05895 PF01791 DeoC/LacD family aldolase HQ395_05900 PF02885 Glycosyl transferase family, helical bundle domain HQ395_05900 PF00591 Glycosyl transferase family, a/b domain HQ395_05900 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HQ395_05905 PF01676 Metalloenzyme superfamily HQ395_05910 PF01048 Phosphorylase superfamily HQ395_05915 PF08447 PAS fold HQ395_05915 PF05231 MASE1 HQ395_05915 PF08448 PAS fold HQ395_05915 PF00990 Diguanylate cyclase, GGDEF domain HQ395_05915 PF13426 PAS domain HQ395_05915 PF00563 EAL domain HQ395_05925 PF18429 Domain of unknown function (DUF5609) HQ395_05940 PF18073 Rubredoxin metal binding domain HQ395_05945 PF07238 PilZ domain HQ395_05950 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HQ395_05960 PF00216 Bacterial DNA-binding protein HQ395_05975 PF01207 Dihydrouridine synthase (Dus) HQ395_05980 PF01475 Ferric uptake regulator family HQ395_05995 PF05525 Branched-chain amino acid transport protein HQ395_06000 PF05525 Branched-chain amino acid transport protein HQ395_06005 PF05175 Methyltransferase small domain HQ395_06010 PF00270 DEAD/DEAH box helicase HQ395_06010 PF00271 Helicase conserved C-terminal domain HQ395_06015 PF03883 Peroxide stress protein YaaA HQ395_06020 PF00437 Type II/IV secretion system protein HQ395_06025 PF00437 Type II/IV secretion system protein HQ395_06030 PF01168 Alanine racemase, N-terminal domain HQ395_06035 PF03807 NADP oxidoreductase coenzyme F420-dependent HQ395_06035 PF14748 Pyrroline-5-carboxylate reductase dimerisation HQ395_06040 PF02325 YGGT family HQ395_06045 PF02594 Uncharacterised ACR, YggU family COG1872 HQ395_06060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_06070 PF00132 Bacterial transferase hexapeptide (six repeats) HQ395_06075 PF10952 Protein of unknown function (DUF2753) HQ395_06080 PF00378 Enoyl-CoA hydratase/isomerase HQ395_06095 PF00106 short chain dehydrogenase HQ395_06100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ395_06100 PF04073 Aminoacyl-tRNA editing domain HQ395_06100 PF03129 Anticodon binding domain HQ395_06105 PF00672 HAMP domain HQ395_06105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_06110 PF01330 RuvA N terminal domain HQ395_06110 PF07499 RuvA, C-terminal domain HQ395_06115 PF05496 Holliday junction DNA helicase RuvB P-loop domain HQ395_06115 PF05491 RuvB C-terminal winged helix domain HQ395_06115 PF17864 RuvB AAA lid domain HQ395_06120 PF01654 Cytochrome bd terminal oxidase subunit I HQ395_06125 PF02322 Cytochrome bd terminal oxidase subunit II HQ395_06130 PF08173 Membrane bound YbgT-like protein HQ395_06135 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HQ395_06140 PF03061 Thioesterase superfamily HQ395_06145 PF01618 MotA/TolQ/ExbB proton channel family HQ395_06150 PF02472 Biopolymer transport protein ExbD/TolR HQ395_06160 PF04052 TolB amino-terminal domain HQ395_06160 PF07676 WD40-like Beta Propeller Repeat HQ395_06165 PF00691 OmpA family HQ395_06170 PF13174 Tetratricopeptide repeat HQ395_06170 PF16331 TolA binding protein trimerisation HQ395_06250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_06250 PF00672 HAMP domain HQ395_06255 PF02445 Quinolinate synthetase A protein HQ395_06260 PF01263 Aldose 1-epimerase HQ395_06265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ395_06265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ395_06270 PF02446 4-alpha-glucanotransferase HQ395_06275 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ395_06275 PF02806 Alpha amylase, C-terminal all-beta domain HQ395_06275 PF00128 Alpha amylase, catalytic domain HQ395_06280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ395_06280 PF00128 Alpha amylase, catalytic domain HQ395_06285 PF01641 SelR domain HQ395_06295 PF00293 NUDIX domain HQ395_06300 PF00107 Zinc-binding dehydrogenase HQ395_06300 PF16884 N-terminal domain of oxidoreductase HQ395_06305 PF02566 OsmC-like protein HQ395_06310 PF01047 MarR family HQ395_06325 PF01037 Lrp/AsnC ligand binding domain HQ395_06340 PF07690 Major Facilitator Superfamily HQ395_06360 PF00209 Sodium:neurotransmitter symporter family HQ395_06370 PF00209 Sodium:neurotransmitter symporter family HQ395_06395 PF00155 Aminotransferase class I and II HQ395_06395 PF00392 Bacterial regulatory proteins, gntR family HQ395_06405 PF01810 LysE type translocator HQ395_06410 PF01177 Asp/Glu/Hydantoin racemase HQ395_06415 PF00394 Multicopper oxidase HQ395_06415 PF07731 Multicopper oxidase HQ395_06415 PF07732 Multicopper oxidase HQ395_06425 PF04074 YhcH/YjgK/YiaL HQ395_06430 PF00871 Acetokinase family HQ395_06435 PF00924 Mechanosensitive ion channel HQ395_06440 PF17969 L,D-transpeptidase C-terminal domain HQ395_06440 PF03734 L,D-transpeptidase catalytic domain HQ395_06445 PF00474 Sodium:solute symporter family HQ395_06450 PF00561 alpha/beta hydrolase fold HQ395_06485 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HQ395_06495 PF00005 ABC transporter HQ395_06495 PF12848 ABC transporter HQ395_06500 PF00571 CBS domain HQ395_06500 PF01380 SIS domain HQ395_06505 PF01957 NfeD-like C-terminal, partner-binding HQ395_06510 PF16200 C-terminal region of band_7 HQ395_06510 PF01145 SPFH domain / Band 7 family HQ395_06520 PF01507 Phosphoadenosine phosphosulfate reductase family HQ395_06525 PF00009 Elongation factor Tu GTP binding domain HQ395_06530 PF02080 TrkA-C domain HQ395_06530 PF03600 Citrate transporter HQ395_06550 PF01609 Transposase DDE domain HQ395_06550 PF13808 DDE_Tnp_1-associated HQ395_06575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_06575 PF08447 PAS fold HQ395_06595 PF00005 ABC transporter HQ395_06610 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HQ395_06625 PF00719 Inorganic pyrophosphatase HQ395_06630 PF01225 Mur ligase family, catalytic domain HQ395_06630 PF02875 Mur ligase family, glutamate ligase domain HQ395_06630 PF08245 Mur ligase middle domain HQ395_06635 PF02441 Flavoprotein HQ395_06640 PF00440 Bacterial regulatory proteins, tetR family HQ395_06645 PF00156 Phosphoribosyl transferase domain HQ395_06650 PF00005 ABC transporter HQ395_06655 PF01061 ABC-2 type transporter HQ395_06660 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HQ395_06665 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ395_06685 PF02569 Pantoate-beta-alanine ligase HQ395_06690 PF02548 Ketopantoate hydroxymethyltransferase HQ395_06695 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ395_06700 PF01743 Poly A polymerase head domain HQ395_06700 PF12626 Polymerase A arginine-rich C-terminus HQ395_06700 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ395_06705 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ395_06710 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ395_06715 PF03749 Sugar fermentation stimulation protein RE domain HQ395_06715 PF17746 SfsA N-terminal OB domain HQ395_06725 PF00270 DEAD/DEAH box helicase HQ395_06725 PF04408 Helicase associated domain (HA2) HQ395_06725 PF00271 Helicase conserved C-terminal domain HQ395_06725 PF08482 ATP-dependent helicase C-terminal HQ395_06730 PF14814 Bifunctional transglycosylase second domain HQ395_06730 PF00912 Transglycosylase HQ395_06730 PF00905 Penicillin binding protein transpeptidase domain HQ395_06735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ395_06740 PF00893 Small Multidrug Resistance protein HQ395_06745 PF00893 Small Multidrug Resistance protein HQ395_06755 PF11849 Domain of unknown function (DUF3369) HQ395_06765 PF01569 PAP2 superfamily HQ395_06780 PF00202 Aminotransferase class-III HQ395_06785 PF00654 Voltage gated chloride channel HQ395_06795 PF01521 Iron-sulphur cluster biosynthesis HQ395_06820 PF01810 LysE type translocator HQ395_06840 PF01252 Signal peptidase (SPase) II HQ395_06850 PF13411 MerR HTH family regulatory protein HQ395_06860 PF00816 H-NS histone family HQ395_06870 PF05930 Prophage CP4-57 regulatory protein (AlpA) HQ395_06920 PF04002 RadC-like JAB domain HQ395_06925 PF00665 Integrase core domain HQ395_06930 PF01695 IstB-like ATP binding protein HQ395_06990 PF00176 SNF2 family N-terminal domain HQ395_06990 PF00271 Helicase conserved C-terminal domain HQ395_06995 PF02954 Bacterial regulatory protein, Fis family HQ395_07000 PF01207 Dihydrouridine synthase (Dus) HQ395_07005 PF02321 Outer membrane efflux protein HQ395_07010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_07040 PF00072 Response regulator receiver domain HQ395_07045 PF00854 POT family HQ395_07050 PF00483 Nucleotidyl transferase HQ395_07060 PF00459 Inositol monophosphatase family HQ395_07065 PF03795 YCII-related domain HQ395_07070 PF04279 Intracellular septation protein A HQ395_07075 PF00282 Pyridoxal-dependent decarboxylase conserved domain HQ395_07080 PF03006 Haemolysin-III related HQ395_07085 PF06826 Predicted Permease Membrane Region HQ395_07085 PF02080 TrkA-C domain HQ395_07095 PF01584 CheW-like domain HQ395_07095 PF00072 Response regulator receiver domain HQ395_07100 PF13472 GDSL-like Lipase/Acylhydrolase family HQ395_07105 PF00005 ABC transporter HQ395_07115 PF01370 NAD dependent epimerase/dehydratase family HQ395_07115 PF08338 Domain of unknown function (DUF1731) HQ395_07120 PF00563 EAL domain HQ395_07120 PF12792 CSS motif domain associated with EAL HQ395_07125 PF00155 Aminotransferase class I and II HQ395_07130 PF01483 Proprotein convertase P-domain HQ395_07130 PF04389 Peptidase family M28 HQ395_07135 PF02390 Putative methyltransferase HQ395_07140 PF04320 Protein with unknown function (DUF469) HQ395_07145 PF04960 Glutaminase HQ395_07150 PF00581 Rhodanese-like domain HQ395_07155 PF05922 Peptidase inhibitor I9 HQ395_07155 PF00082 Subtilase family HQ395_07160 PF06004 Bacterial protein of unknown function (DUF903) HQ395_07165 PF00664 ABC transporter transmembrane region HQ395_07165 PF00005 ABC transporter HQ395_07170 PF00561 alpha/beta hydrolase fold HQ395_07185 PF00589 Phage integrase family HQ395_07195 PF01609 Transposase DDE domain HQ395_07195 PF13808 DDE_Tnp_1-associated HQ395_07215 PF08448 PAS fold HQ395_07215 PF13426 PAS domain HQ395_07215 PF08447 PAS fold HQ395_07215 PF05231 MASE1 HQ395_07215 PF00990 Diguanylate cyclase, GGDEF domain HQ395_07215 PF00563 EAL domain HQ395_07220 PF00589 Phage integrase family HQ395_07220 PF02899 Phage integrase, N-terminal SAM-like domain HQ395_07255 PF01609 Transposase DDE domain HQ395_07255 PF05598 Transposase domain (DUF772) HQ395_07265 PF05547 Immune inhibitor A peptidase M6 HQ395_07265 PF00801 PKD domain HQ395_07270 PF06877 Regulator of ribonuclease activity B HQ395_07275 PF00990 Diguanylate cyclase, GGDEF domain HQ395_07275 PF03707 Bacterial signalling protein N terminal repeat HQ395_07275 PF00563 EAL domain HQ395_07285 PF12833 Helix-turn-helix domain HQ395_07285 PF12852 Cupin HQ395_07290 PF02627 Carboxymuconolactone decarboxylase family HQ395_07295 PF04224 Protein of unknown function, DUF417 HQ395_07310 PF09905 DNA-binding protein VF530 HQ395_07315 PF02666 Phosphatidylserine decarboxylase HQ395_07320 PF03193 RsgA GTPase HQ395_07325 PF00929 Exonuclease HQ395_07365 PF00313 'Cold-shock' DNA-binding domain HQ395_07375 PF00672 HAMP domain HQ395_07375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_07380 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ395_07415 PF00704 Glycosyl hydrolases family 18 HQ395_07415 PF06483 Chitinase C HQ395_07430 PF02472 Biopolymer transport protein ExbD/TolR HQ395_07435 PF01618 MotA/TolQ/ExbB proton channel family HQ395_07440 PF01618 MotA/TolQ/ExbB proton channel family HQ395_07450 PF07715 TonB-dependent Receptor Plug Domain HQ395_07450 PF00593 TonB dependent receptor HQ395_07455 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_07460 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ395_07460 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_07470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_07470 PF00005 ABC transporter HQ395_07475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_07475 PF00005 ABC transporter HQ395_07480 PF01546 Peptidase family M20/M25/M40 HQ395_07480 PF07687 Peptidase dimerisation domain HQ395_07485 PF00156 Phosphoribosyl transferase domain HQ395_07490 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HQ395_07495 PF07417 Sigma factor-binding transcriptional regulator Crl HQ395_07500 PF00696 Amino acid kinase family HQ395_07500 PF01472 PUA domain HQ395_07505 PF00171 Aldehyde dehydrogenase family HQ395_07515 PF00582 Universal stress protein family HQ395_07540 PF00294 pfkB family carbohydrate kinase HQ395_07545 PF04227 Indigoidine synthase A like protein HQ395_07550 PF00194 Eukaryotic-type carbonic anhydrase HQ395_07555 PF00034 Cytochrome c HQ395_07555 PF03150 Di-haem cytochrome c peroxidase HQ395_07590 PF00550 Phosphopantetheine attachment site HQ395_07595 PF00550 Phosphopantetheine attachment site HQ395_07605 PF13193 AMP-binding enzyme C-terminal domain HQ395_07605 PF00501 AMP-binding enzyme HQ395_07610 PF07977 FabA-like domain HQ395_07620 PF00221 Aromatic amino acid lyase HQ395_07645 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ395_07645 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ395_07660 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ395_07660 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ395_07670 PF00994 Probable molybdopterin binding domain HQ395_07680 PF06738 Putative threonine/serine exporter HQ395_07685 PF12821 Threonine/Serine exporter, ThrE HQ395_07690 PF00186 Dihydrofolate reductase HQ395_07695 PF00005 ABC transporter HQ395_07695 PF00571 CBS domain HQ395_07700 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_07705 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HQ395_07710 PF01507 Phosphoadenosine phosphosulfate reductase family HQ395_07715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ395_07715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ395_07720 PF00175 Oxidoreductase NAD-binding domain HQ395_07720 PF00667 FAD binding domain HQ395_07720 PF00258 Flavodoxin HQ395_07725 PF02567 Phenazine biosynthesis-like protein HQ395_07730 PF01336 OB-fold nucleic acid binding domain HQ395_07730 PF00152 tRNA synthetases class II (D, K and N) HQ395_07740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_07740 PF02743 Cache domain HQ395_07740 PF00672 HAMP domain HQ395_07745 PF03616 Sodium/glutamate symporter HQ395_07750 PF17763 Glutaminase/Asparaginase C-terminal domain HQ395_07750 PF00710 Asparaginase, N-terminal HQ395_07755 PF07023 Protein of unknown function (DUF1315) HQ395_07760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ395_07760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ395_07775 PF01343 Peptidase family S49 HQ395_07780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ395_07780 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_07785 PF00881 Nitroreductase family HQ395_07790 PF14602 Hexapeptide repeat of succinyl-transferase HQ395_07790 PF12464 Maltose acetyltransferase HQ395_07795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ395_07795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ395_07795 PF01842 ACT domain HQ395_07805 PF00107 Zinc-binding dehydrogenase HQ395_07805 PF08240 Alcohol dehydrogenase GroES-like domain HQ395_07810 PF03466 LysR substrate binding domain HQ395_07810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_07815 PF00367 phosphotransferase system, EIIB HQ395_07815 PF02378 Phosphotransferase system, EIIC HQ395_07815 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ395_07820 PF00474 Sodium:solute symporter family HQ395_07830 PF00289 Biotin carboxylase, N-terminal domain HQ395_07830 PF02785 Biotin carboxylase C-terminal domain HQ395_07830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ395_07835 PF00364 Biotin-requiring enzyme HQ395_07840 PF01220 Dehydroquinase class II HQ395_07845 PF00501 AMP-binding enzyme HQ395_07845 PF13193 AMP-binding enzyme C-terminal domain HQ395_07845 PF16177 Acetyl-coenzyme A synthetase N-terminus HQ395_07855 PF00563 EAL domain HQ395_07855 PF00990 Diguanylate cyclase, GGDEF domain HQ395_07855 PF03707 Bacterial signalling protein N terminal repeat HQ395_07855 PF13188 PAS domain HQ395_07875 PF02613 Nitrate reductase delta subunit HQ395_07890 PF00464 Serine hydroxymethyltransferase HQ395_07905 PF03477 ATP cone domain HQ395_07910 PF01872 RibD C-terminal domain HQ395_07910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ395_07915 PF00677 Lumazine binding domain HQ395_07920 PF00925 GTP cyclohydrolase II HQ395_07920 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ395_07930 PF00885 6,7-dimethyl-8-ribityllumazine synthase HQ395_07935 PF01029 NusB family HQ395_07940 PF00586 AIR synthase related protein, N-terminal domain HQ395_07940 PF02769 AIR synthase related protein, C-terminal domain HQ395_07945 PF04608 Phosphatidylglycerophosphatase A HQ395_07950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_07950 PF00005 ABC transporter HQ395_07955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_07960 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_07965 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_07965 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ395_07970 PF02780 Transketolase, C-terminal domain HQ395_07970 PF02779 Transketolase, pyrimidine binding domain HQ395_07970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HQ395_07975 PF00348 Polyprenyl synthetase HQ395_07980 PF02609 Exonuclease VII small subunit HQ395_07985 PF01618 MotA/TolQ/ExbB proton channel family HQ395_07990 PF00691 OmpA family HQ395_07990 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ395_07995 PF03449 Transcription elongation factor, N-terminal HQ395_07995 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ395_08005 PF01985 CRS1 / YhbY (CRM) domain HQ395_08010 PF01728 FtsJ-like methyltransferase HQ395_08015 PF01434 Peptidase family M41 HQ395_08015 PF06480 FtsH Extracellular HQ395_08015 PF17862 AAA+ lid domain HQ395_08015 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_08020 PF00809 Pterin binding enzyme HQ395_08025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ395_08025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ395_08025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ395_08025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ395_08030 PF00121 Triosephosphate isomerase HQ395_08035 PF03840 Preprotein translocase SecG subunit HQ395_08050 PF17384 RimP C-terminal SH3 domain HQ395_08050 PF02576 RimP N-terminal domain HQ395_08055 PF00575 S1 RNA binding domain HQ395_08055 PF13184 NusA-like KH domain HQ395_08055 PF08529 NusA N-terminal domain HQ395_08060 PF00009 Elongation factor Tu GTP binding domain HQ395_08060 PF08364 Bacterial translation initiation factor IF-2 associated region HQ395_08060 PF11987 Translation-initiation factor 2 HQ395_08060 PF04760 Translation initiation factor IF-2, N-terminal region HQ395_08065 PF02033 Ribosome-binding factor A HQ395_08070 PF01509 TruB family pseudouridylate synthase (N terminal domain) HQ395_08070 PF09157 Pseudouridine synthase II TruB, C-terminal HQ395_08070 PF16198 tRNA pseudouridylate synthase B C-terminal domain HQ395_08075 PF00312 Ribosomal protein S15 HQ395_08080 PF01138 3' exoribonuclease family, domain 1 HQ395_08080 PF00013 KH domain HQ395_08080 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HQ395_08080 PF00575 S1 RNA binding domain HQ395_08080 PF03725 3' exoribonuclease family, domain 2 HQ395_08085 PF07690 Major Facilitator Superfamily HQ395_08090 PF00563 EAL domain HQ395_08090 PF00990 Diguanylate cyclase, GGDEF domain HQ395_08090 PF03707 Bacterial signalling protein N terminal repeat HQ395_08095 PF02635 DsrE/DsrF-like family HQ395_08105 PF00206 Lyase HQ395_08105 PF10415 Fumarase C C-terminus HQ395_08110 PF03575 Peptidase family S51 HQ395_08115 PF02554 Carbon starvation protein CstA HQ395_08115 PF13722 5TM C-terminal transporter carbon starvation CstA HQ395_08120 PF04397 LytTr DNA-binding domain HQ395_08120 PF00072 Response regulator receiver domain HQ395_08125 PF07694 5TMR of 5TMR-LYT HQ395_08125 PF06580 Histidine kinase HQ395_08130 PF00196 Bacterial regulatory proteins, luxR family HQ395_08130 PF00072 Response regulator receiver domain HQ395_08140 PF13247 4Fe-4S dicluster domain HQ395_08145 PF03916 Polysulphide reductase, NrfD HQ395_08150 PF00384 Molybdopterin oxidoreductase HQ395_08150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ395_08150 PF01568 Molydopterin dinucleotide binding domain HQ395_08175 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase HQ395_08180 PF17969 L,D-transpeptidase C-terminal domain HQ395_08180 PF03734 L,D-transpeptidase catalytic domain HQ395_08190 PF01523 Putative modulator of DNA gyrase HQ395_08200 PF00258 Flavodoxin HQ395_08205 PF00589 Phage integrase family HQ395_08205 PF02899 Phage integrase, N-terminal SAM-like domain HQ395_08210 PF01741 Large-conductance mechanosensitive channel, MscL HQ395_08215 PF13098 Thioredoxin-like domain HQ395_08215 PF10411 Disulfide bond isomerase protein N-terminus HQ395_08220 PF02272 DHHA1 domain HQ395_08220 PF17768 RecJ OB domain HQ395_08220 PF01368 DHH family HQ395_08230 PF13411 MerR HTH family regulatory protein HQ395_08245 PF02508 Rnf-Nqr subunit, membrane protein HQ395_08250 PF06821 Serine hydrolase HQ395_08260 PF04055 Radical SAM superfamily HQ395_08260 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HQ395_08265 PF03099 Biotin/lipoate A/B protein ligase family HQ395_08270 PF04359 Protein of unknown function (DUF493) HQ395_08275 PF07943 Penicillin-binding protein 5, C-terminal domain HQ395_08275 PF00768 D-alanyl-D-alanine carboxypeptidase HQ395_08280 PF03330 Lytic transglycolase HQ395_08280 PF05036 Sporulation related domain HQ395_08285 PF13406 Transglycosylase SLT domain HQ395_08290 PF01098 Cell cycle protein HQ395_08295 PF03717 Penicillin-binding Protein dimerisation domain HQ395_08295 PF00905 Penicillin binding protein transpeptidase domain HQ395_08300 PF02590 Predicted SPOUT methyltransferase HQ395_08310 PF01467 Cytidylyltransferase-like HQ395_08325 PF13603 Leucyl-tRNA synthetase, Domain 2 HQ395_08325 PF00133 tRNA synthetases class I (I, L, M and V) HQ395_08325 PF08264 Anticodon-binding domain of tRNA HQ395_08330 PF07295 Zinc-ribbon containing domain HQ395_08335 PF00795 Carbon-nitrogen hydrolase HQ395_08340 PF03471 Transporter associated domain HQ395_08340 PF00571 CBS domain HQ395_08345 PF02130 Uncharacterized protein family UPF0054 HQ395_08350 PF02562 PhoH-like protein HQ395_08360 PF01494 FAD binding domain HQ395_08365 PF00857 Isochorismatase family HQ395_08370 PF00313 'Cold-shock' DNA-binding domain HQ395_08375 PF00990 Diguanylate cyclase, GGDEF domain HQ395_08375 PF05230 MASE2 domain HQ395_08380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_08380 PF03466 LysR substrate binding domain HQ395_08390 PF13419 Haloacid dehalogenase-like hydrolase HQ395_08400 PF00990 Diguanylate cyclase, GGDEF domain HQ395_08410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ395_08410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ395_08420 PF09997 Predicted membrane protein (DUF2238) HQ395_08425 PF08207 Elongation factor P (EF-P) KOW-like domain HQ395_08425 PF01132 Elongation factor P (EF-P) OB domain HQ395_08425 PF09285 Elongation factor P, C-terminal HQ395_08435 PF00478 IMP dehydrogenase / GMP reductase domain HQ395_08455 PF08521 Two-component sensor kinase N-terminal HQ395_08455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_08455 PF00512 His Kinase A (phospho-acceptor) domain HQ395_08460 PF00072 Response regulator receiver domain HQ395_08460 PF00486 Transcriptional regulatory protein, C terminal HQ395_08480 PF00501 AMP-binding enzyme HQ395_08490 PF13649 Methyltransferase domain HQ395_08495 PF06224 Winged helix DNA-binding domain HQ395_08515 PF02313 Fumarate reductase subunit D HQ395_08520 PF02300 Fumarate reductase subunit C HQ395_08525 PF13183 4Fe-4S dicluster domain HQ395_08525 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ395_08530 PF02910 Fumarate reductase flavoprotein C-term HQ395_08530 PF00890 FAD binding domain HQ395_08535 PF02743 Cache domain HQ395_08535 PF00672 HAMP domain HQ395_08535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_08540 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ395_08545 PF00924 Mechanosensitive ion channel HQ395_08545 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ395_08545 PF12795 Mechanosensitive ion channel porin domain HQ395_08555 PF08525 Opacity-associated protein A N-terminal motif HQ395_08555 PF01551 Peptidase family M23 HQ395_08555 PF01476 LysM domain HQ395_08570 PF03466 LysR substrate binding domain HQ395_08570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_08585 PF02743 Cache domain HQ395_08585 PF00672 HAMP domain HQ395_08585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_08590 PF03466 LysR substrate binding domain HQ395_08590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_08595 PF00912 Transglycosylase HQ395_08595 PF00905 Penicillin binding protein transpeptidase domain HQ395_08595 PF17092 Penicillin-binding protein OB-like domain HQ395_08600 PF11104 Type IV pilus assembly protein PilM; HQ395_08610 PF04350 Pilus assembly protein, PilO HQ395_08620 PF00263 Bacterial type II and III secretion system protein HQ395_08620 PF11741 AMIN domain HQ395_08620 PF03958 Bacterial type II/III secretion system short domain HQ395_08620 PF07660 Secretin and TonB N terminus short domain HQ395_08625 PF01202 Shikimate kinase HQ395_08630 PF01761 3-dehydroquinate synthase HQ395_08640 PF02086 D12 class N6 adenine-specific DNA methyltransferase HQ395_08645 PF00834 Ribulose-phosphate 3 epimerase family HQ395_08650 PF13419 Haloacid dehalogenase-like hydrolase HQ395_08655 PF00579 tRNA synthetases class I (W and Y) HQ395_08665 PF00117 Glutamine amidotransferase class-I HQ395_08670 PF00202 Aminotransferase class-III HQ395_08675 PF04958 Arginine N-succinyltransferase beta subunit HQ395_08680 PF00171 Aldehyde dehydrogenase family HQ395_08705 PF13419 Haloacid dehalogenase-like hydrolase HQ395_08710 PF07690 Major Facilitator Superfamily HQ395_08715 PF10371 Domain of unknown function HQ395_08715 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ395_08715 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ395_08715 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ395_08715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ395_08725 PF16657 Maltogenic Amylase, C-terminal domain HQ395_08725 PF00128 Alpha amylase, catalytic domain HQ395_08735 PF04266 ASCH domain HQ395_08745 PF01048 Phosphorylase superfamily HQ395_08750 PF04973 Nicotinamide mononucleotide transporter HQ395_08755 PF03600 Citrate transporter HQ395_08755 PF02080 TrkA-C domain HQ395_08825 PF12728 Helix-turn-helix domain HQ395_08825 PF02661 Fic/DOC family HQ395_08830 PF11798 IMS family HHH motif HQ395_08830 PF13438 Domain of unknown function (DUF4113) HQ395_08830 PF00817 impB/mucB/samB family HQ395_08830 PF11799 impB/mucB/samB family C-terminal domain HQ395_08835 PF00717 Peptidase S24-like HQ395_08850 PF12161 HsdM N-terminal domain HQ395_08850 PF02384 N-6 DNA Methylase HQ395_08855 PF01609 Transposase DDE domain HQ395_08855 PF13808 DDE_Tnp_1-associated HQ395_08875 PF11867 Domain of unknown function (DUF3387) HQ395_08875 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HQ395_08875 PF18766 SWI2/SNF2 ATPase HQ395_08900 PF12419 SNF2 Helicase protein HQ395_08900 PF00176 SNF2 family N-terminal domain HQ395_08900 PF00271 Helicase conserved C-terminal domain HQ395_08905 PF04002 RadC-like JAB domain HQ395_08950 PF09588 YqaJ-like viral recombinase domain HQ395_08960 PF06071 Protein of unknown function (DUF933) HQ395_08960 PF01926 50S ribosome-binding GTPase HQ395_08965 PF01195 Peptidyl-tRNA hydrolase HQ395_08970 PF00149 Calcineurin-like phosphoesterase HQ395_08970 PF02872 5'-nucleotidase, C-terminal domain HQ395_08975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HQ395_08975 PF14572 Phosphoribosyl synthetase-associated domain HQ395_08985 PF00288 GHMP kinases N terminal domain HQ395_08985 PF08544 GHMP kinases C terminal HQ395_08990 PF03550 Outer membrane lipoprotein LolB HQ395_08995 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HQ395_08995 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HQ395_08995 PF01488 Shikimate / quinate 5-dehydrogenase HQ395_09000 PF00472 RF-1 domain HQ395_09000 PF03462 PCRF domain HQ395_09005 PF13847 Methyltransferase domain HQ395_09005 PF17827 PrmC N-terminal domain HQ395_09015 PF13369 Transglutaminase-like superfamily HQ395_09020 PF00793 DAHP synthetase I family HQ395_09025 PF00375 Sodium:dicarboxylate symporter family HQ395_09030 PF01228 Glycine radical HQ395_09035 PF03167 Uracil DNA glycosylase superfamily HQ395_09050 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ395_09055 PF01235 Sodium:alanine symporter family HQ395_09060 PF11992 Domain of unknown function (DUF3488) HQ395_09060 PF13559 Domain of unknown function (DUF4129) HQ395_09060 PF01841 Transglutaminase-like superfamily HQ395_09070 PF07726 ATPase family associated with various cellular activities (AAA) HQ395_09070 PF17863 AAA lid domain HQ395_09075 PF00144 Beta-lactamase HQ395_09080 PF00854 POT family HQ395_09085 PF03652 Holliday junction resolvase HQ395_09090 PF02622 Uncharacterized ACR, COG1678 HQ395_09095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_09095 PF00672 HAMP domain HQ395_09095 PF12729 Four helix bundle sensory module for signal transduction HQ395_09100 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HQ395_09100 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HQ395_09105 PF04452 RNA methyltransferase HQ395_09110 PF04231 Endonuclease I HQ395_09115 PF10263 SprT-like family HQ395_09115 PF17283 SprT-like zinc ribbon domain HQ395_09240 PF08461 Ribonuclease R winged-helix domain HQ395_09245 PF11985 Protein of unknown function (DUF3486) HQ395_09250 PF03237 Terminase-like family HQ395_09255 PF06074 Protein of unknown function (DUF935) HQ395_09275 PF10123 Mu-like prophage I protein HQ395_09280 PF10124 Mu-like prophage major head subunit gpT HQ395_09350 PF02773 S-adenosylmethionine synthetase, C-terminal domain HQ395_09350 PF02772 S-adenosylmethionine synthetase, central domain HQ395_09350 PF00438 S-adenosylmethionine synthetase, N-terminal domain HQ395_09355 PF00456 Transketolase, thiamine diphosphate binding domain HQ395_09355 PF02779 Transketolase, pyrimidine binding domain HQ395_09355 PF02780 Transketolase, C-terminal domain HQ395_09370 PF01042 Endoribonuclease L-PSP HQ395_09375 PF01965 DJ-1/PfpI family HQ395_09380 PF03702 Anhydro-N-acetylmuramic acid kinase HQ395_09385 PF08525 Opacity-associated protein A N-terminal motif HQ395_09385 PF01476 LysM domain HQ395_09385 PF01551 Peptidase family M23 HQ395_09390 PF00579 tRNA synthetases class I (W and Y) HQ395_09395 PF01204 Trehalase HQ395_09405 PF01161 Phosphatidylethanolamine-binding protein HQ395_09410 PF00709 Adenylosuccinate synthetase HQ395_09415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_09415 PF03466 LysR substrate binding domain HQ395_09425 PF00155 Aminotransferase class I and II HQ395_09430 PF07690 Major Facilitator Superfamily HQ395_09435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_09435 PF03466 LysR substrate binding domain HQ395_09440 PF00106 short chain dehydrogenase HQ395_09445 PF01343 Peptidase family S49 HQ395_09445 PF08496 Peptidase family S49 N-terminal HQ395_09450 PF04996 Succinylarginine dihydrolase HQ395_09455 PF08272 Topoisomerase I zinc-ribbon-like HQ395_09455 PF01751 Toprim domain HQ395_09455 PF01131 DNA topoisomerase HQ395_09455 PF01396 Topoisomerase DNA binding C4 zinc finger HQ395_09470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_09470 PF08447 PAS fold HQ395_09475 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ395_09475 PF02838 Glycosyl hydrolase family 20, domain 2 HQ395_09480 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ395_09490 PF00005 ABC transporter HQ395_09490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_09495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_09495 PF00005 ABC transporter HQ395_09500 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_09500 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ395_09505 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_09510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_09515 PF00512 His Kinase A (phospho-acceptor) domain HQ395_09515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_09515 PF00072 Response regulator receiver domain HQ395_09515 PF09308 LuxQ, periplasmic HQ395_09535 PF10725 Protein of unknown function (DUF2517) HQ395_09545 PF05114 Protein of unknown function (DUF692) HQ395_09565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_09565 PF08447 PAS fold HQ395_09565 PF13426 PAS domain HQ395_09580 PF04632 Fusaric acid resistance protein family HQ395_09585 PF03454 MoeA C-terminal region (domain IV) HQ395_09585 PF03453 MoeA N-terminal region (domain I and II) HQ395_09585 PF00994 Probable molybdopterin binding domain HQ395_09590 PF12804 MobA-like NTP transferase domain HQ395_09595 PF00005 ABC transporter HQ395_09600 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_09605 PF12849 PBP superfamily domain HQ395_09610 PF02954 Bacterial regulatory protein, Fis family HQ395_09610 PF00072 Response regulator receiver domain HQ395_09610 PF00158 Sigma-54 interaction domain HQ395_09615 PF00512 His Kinase A (phospho-acceptor) domain HQ395_09615 PF00989 PAS fold HQ395_09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_09620 PF12728 Helix-turn-helix domain HQ395_09620 PF12727 PBP superfamily domain HQ395_09625 PF02634 FdhD/NarQ family HQ395_09660 PF01568 Molydopterin dinucleotide binding domain HQ395_09660 PF00384 Molybdopterin oxidoreductase HQ395_09660 PF12838 4Fe-4S dicluster domain HQ395_09660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ395_09660 PF00384 Molybdopterin oxidoreductase HQ395_09660 PF01568 Molydopterin dinucleotide binding domain HQ395_09660 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ395_09660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ395_09660 PF12838 4Fe-4S dicluster domain HQ395_09660 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ395_09665 PF13247 4Fe-4S dicluster domain HQ395_09675 PF00072 Response regulator receiver domain HQ395_09680 PF03949 Malic enzyme, NAD binding domain HQ395_09680 PF00390 Malic enzyme, N-terminal domain HQ395_09685 PF00860 Permease family HQ395_09690 PF10282 Lactonase, 7-bladed beta-propeller HQ395_09700 PF00924 Mechanosensitive ion channel HQ395_09700 PF12795 Mechanosensitive ion channel porin domain HQ395_09700 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ395_09705 PF00224 Pyruvate kinase, barrel domain HQ395_09705 PF02887 Pyruvate kinase, alpha/beta domain HQ395_09715 PF04389 Peptidase family M28 HQ395_09715 PF04151 Bacterial pre-peptidase C-terminal domain HQ395_09720 PF00999 Sodium/hydrogen exchanger family HQ395_09720 PF02254 TrkA-N domain HQ395_09730 PF04381 Putative exonuclease, RdgC HQ395_09740 PF12320 Type 5 capsule protein repressor C-terminal domain HQ395_09740 PF00149 Calcineurin-like phosphoesterase HQ395_09745 PF13476 AAA domain HQ395_09760 PF01292 Prokaryotic cytochrome b561 HQ395_09770 PF00990 Diguanylate cyclase, GGDEF domain HQ395_09775 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ395_09780 PF02896 PEP-utilising enzyme, TIM barrel domain HQ395_09780 PF05524 PEP-utilising enzyme, N-terminal HQ395_09780 PF00391 PEP-utilising enzyme, mobile domain HQ395_09785 PF00381 PTS HPr component phosphorylation site HQ395_09790 PF00291 Pyridoxal-phosphate dependent enzyme HQ395_09795 PF10431 C-terminal, D2-small domain, of ClpB protein HQ395_09795 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_09795 PF07724 AAA domain (Cdc48 subfamily) HQ395_09795 PF17871 AAA lid domain HQ395_09795 PF02861 Clp amino terminal domain, pathogenicity island component HQ395_09805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ395_09805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ395_09810 PF18389 TrmO C-terminal domain HQ395_09810 PF01980 tRNA-methyltransferase O HQ395_09830 PF00664 ABC transporter transmembrane region HQ395_09830 PF00005 ABC transporter HQ395_09835 PF00664 ABC transporter transmembrane region HQ395_09835 PF00005 ABC transporter HQ395_09850 PF00072 Response regulator receiver domain HQ395_09850 PF00486 Transcriptional regulatory protein, C terminal HQ395_09860 PF03737 Aldolase/RraA HQ395_09875 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HQ395_09880 PF00588 SpoU rRNA Methylase family HQ395_09885 PF00696 Amino acid kinase family HQ395_09885 PF01842 ACT domain HQ395_09885 PF13840 ACT domain HQ395_09885 PF00742 Homoserine dehydrogenase HQ395_09885 PF03447 Homoserine dehydrogenase, NAD binding domain HQ395_09890 PF00288 GHMP kinases N terminal domain HQ395_09890 PF08544 GHMP kinases C terminal HQ395_09895 PF14821 Threonine synthase N terminus HQ395_09895 PF00291 Pyridoxal-phosphate dependent enzyme HQ395_09905 PF00005 ABC transporter HQ395_09905 PF12848 ABC transporter HQ395_09920 PF01048 Phosphorylase superfamily HQ395_09935 PF00989 PAS fold HQ395_09935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_09935 PF00512 His Kinase A (phospho-acceptor) domain HQ395_09935 PF01627 Hpt domain HQ395_09935 PF00072 Response regulator receiver domain HQ395_09935 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_09940 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HQ395_09945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ395_09945 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ395_09960 PF13520 Amino acid permease HQ395_09970 PF00324 Amino acid permease HQ395_09975 PF00202 Aminotransferase class-III HQ395_09980 PF00171 Aldehyde dehydrogenase family HQ395_09985 PF01381 Helix-turn-helix HQ395_09985 PF07883 Cupin domain HQ395_09990 PF01266 FAD dependent oxidoreductase HQ395_10005 PF00816 H-NS histone family HQ395_10010 PF00793 DAHP synthetase I family HQ395_10015 PF08021 Siderophore-interacting FAD-binding domain HQ395_10015 PF04954 Siderophore-interacting protein HQ395_10020 PF02321 Outer membrane efflux protein HQ395_10025 PF00005 ABC transporter HQ395_10025 PF12704 MacB-like periplasmic core domain HQ395_10025 PF02687 FtsX-like permease family HQ395_10030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_10040 PF02833 DHHA2 domain HQ395_10040 PF01368 DHH family HQ395_10050 PF01513 ATP-NAD kinase HQ395_10055 PF01025 GrpE HQ395_10060 PF00012 Hsp70 protein HQ395_10065 PF00226 DnaJ domain HQ395_10065 PF01556 DnaJ C terminal domain HQ395_10065 PF00684 DnaJ central domain HQ395_10070 PF02264 LamB porin HQ395_10070 PF11471 Maltoporin periplasmic N-terminal extension HQ395_10075 PF00294 pfkB family carbohydrate kinase HQ395_10080 PF00367 phosphotransferase system, EIIB HQ395_10080 PF02378 Phosphotransferase system, EIIC HQ395_10085 PF08244 Glycosyl hydrolases family 32 C terminal HQ395_10085 PF00251 Glycosyl hydrolases family 32 N-terminal domain HQ395_10090 PF13407 Periplasmic binding protein domain HQ395_10090 PF00356 Bacterial regulatory proteins, lacI family HQ395_10095 PF02308 MgtC family HQ395_10110 PF01022 Bacterial regulatory protein, arsR family HQ395_10115 PF04143 Sulphur transport HQ395_10130 PF00873 AcrB/AcrD/AcrF family HQ395_10135 PF03707 Bacterial signalling protein N terminal repeat HQ395_10135 PF00990 Diguanylate cyclase, GGDEF domain HQ395_10135 PF00563 EAL domain HQ395_10140 PF10437 Bacterial lipoate protein ligase C-terminus HQ395_10140 PF03099 Biotin/lipoate A/B protein ligase family HQ395_10160 PF00873 AcrB/AcrD/AcrF family HQ395_10165 PF00529 HlyD membrane-fusion protein of T1SS HQ395_10165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_10175 PF00873 AcrB/AcrD/AcrF family HQ395_10180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_10185 PF03372 Endonuclease/Exonuclease/phosphatase family HQ395_10205 PF02424 ApbE family HQ395_10210 PF00127 Copper binding proteins, plastocyanin/azurin family HQ395_10225 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ395_10235 PF00034 Cytochrome c HQ395_10235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ395_10245 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HQ395_10245 PF06481 COX Aromatic Rich Motif HQ395_10250 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ395_10255 PF00510 Cytochrome c oxidase subunit III HQ395_10260 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HQ395_10265 PF01040 UbiA prenyltransferase family HQ395_10270 PF07690 Major Facilitator Superfamily HQ395_10280 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HQ395_10285 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_10290 PF00005 ABC transporter HQ395_10295 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HQ395_10325 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ395_10350 PF00290 Tryptophan synthase alpha chain HQ395_10355 PF00291 Pyridoxal-phosphate dependent enzyme HQ395_10360 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HQ395_10360 PF00218 Indole-3-glycerol phosphate synthase HQ395_10365 PF02885 Glycosyl transferase family, helical bundle domain HQ395_10365 PF00591 Glycosyl transferase family, a/b domain HQ395_10370 PF02885 Glycosyl transferase family, helical bundle domain HQ395_10370 PF00117 Glutamine amidotransferase class-I HQ395_10370 PF00591 Glycosyl transferase family, a/b domain HQ395_10375 PF04715 Anthranilate synthase component I, N terminal region HQ395_10375 PF00425 chorismate binding enzyme HQ395_10380 PF02811 PHP domain HQ395_10385 PF01300 Telomere recombination HQ395_10390 PF02616 Segregation and condensation protein ScpA HQ395_10395 PF04079 Segregation and condensation complex subunit ScpB HQ395_10400 PF01479 S4 domain HQ395_10400 PF00849 RNA pseudouridylate synthase HQ395_10420 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ395_10420 PF00440 Bacterial regulatory proteins, tetR family HQ395_10425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_10425 PF00529 HlyD membrane-fusion protein of T1SS HQ395_10430 PF00873 AcrB/AcrD/AcrF family HQ395_10435 PF02321 Outer membrane efflux protein HQ395_10440 PF16363 GDP-mannose 4,6 dehydratase HQ395_10445 PF04321 RmlD substrate binding domain HQ395_10450 PF00483 Nucleotidyl transferase HQ395_10455 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HQ395_10460 PF00437 Type II/IV secretion system protein HQ395_10465 PF00482 Type II secretion system (T2SS), protein F HQ395_10470 PF08334 Type II secretion system (T2SS), protein G HQ395_10470 PF07963 Prokaryotic N-terminal methylation motif HQ395_10475 PF07963 Prokaryotic N-terminal methylation motif HQ395_10510 PF00263 Bacterial type II and III secretion system protein HQ395_10510 PF03958 Bacterial type II/III secretion system short domain HQ395_10530 PF00005 ABC transporter HQ395_10535 PF05159 Capsule polysaccharide biosynthesis protein HQ395_10540 PF01757 Acyltransferase family HQ395_10550 PF01370 NAD dependent epimerase/dehydratase family HQ395_10555 PF00953 Glycosyl transferase family 4 HQ395_10560 PF02719 Polysaccharide biosynthesis protein HQ395_10570 PF00535 Glycosyl transferase family 2 HQ395_10575 PF13439 Glycosyltransferase Family 4 HQ395_10575 PF00534 Glycosyl transferases group 1 HQ395_10585 PF02397 Bacterial sugar transferase HQ395_10595 PF04337 Protein of unknown function, DUF480 HQ395_10600 PF00271 Helicase conserved C-terminal domain HQ395_10600 PF00176 SNF2 family N-terminal domain HQ395_10600 PF04434 SWIM zinc finger HQ395_10605 PF05472 DNA replication terminus site-binding protein (Ter protein) HQ395_10615 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HQ395_10620 PF00676 Dehydrogenase E1 component HQ395_10625 PF02779 Transketolase, pyrimidine binding domain HQ395_10625 PF02780 Transketolase, C-terminal domain HQ395_10630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ395_10630 PF00364 Biotin-requiring enzyme HQ395_10630 PF02817 e3 binding domain HQ395_10635 PF00313 'Cold-shock' DNA-binding domain HQ395_10665 PF00892 EamA-like transporter family HQ395_10670 PF08220 DeoR-like helix-turn-helix domain HQ395_10670 PF00455 DeoR C terminal sensor domain HQ395_10675 PF02901 Pyruvate formate lyase-like HQ395_10675 PF01228 Glycine radical HQ395_10680 PF04055 Radical SAM superfamily HQ395_10685 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ395_10695 PF11871 Domain of unknown function (DUF3391) HQ395_10695 PF01966 HD domain HQ395_10700 PF00849 RNA pseudouridylate synthase HQ395_10700 PF01479 S4 domain HQ395_10710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_10715 PF12850 Calcineurin-like phosphoesterase superfamily domain HQ395_10730 PF13144 Chaperone for flagella basal body P-ring formation HQ395_10735 PF00072 Response regulator receiver domain HQ395_10735 PF01584 CheW-like domain HQ395_10740 PF01739 CheR methyltransferase, SAM binding domain HQ395_10740 PF03705 CheR methyltransferase, all-alpha domain HQ395_10745 PF00460 Flagella basal body rod protein HQ395_10750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_10750 PF00460 Flagella basal body rod protein HQ395_10760 PF07559 Flagellar basal body protein FlaE HQ395_10760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_10760 PF00460 Flagella basal body rod protein HQ395_10770 PF00460 Flagella basal body rod protein HQ395_10770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_10775 PF00460 Flagella basal body rod protein HQ395_10775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ395_10780 PF02107 Flagellar L-ring protein HQ395_10785 PF02119 Flagellar P-ring protein HQ395_10790 PF10135 Rod binding protein HQ395_10790 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HQ395_10800 PF00669 Bacterial flagellin N-terminal helical region HQ395_10805 PF03448 MgtE intracellular N domain HQ395_10805 PF01769 Divalent cation transporter HQ395_10805 PF00571 CBS domain HQ395_10810 PF02541 Ppx/GppA phosphatase family HQ395_10815 PF17941 Polyphosphate kinase C-terminal domain 1 HQ395_10815 PF13089 Polyphosphate kinase N-terminal domain HQ395_10815 PF13090 Polyphosphate kinase C-terminal domain 2 HQ395_10815 PF02503 Polyphosphate kinase middle domain HQ395_10820 PF01842 ACT domain HQ395_10830 PF02954 Bacterial regulatory protein, Fis family HQ395_10830 PF00158 Sigma-54 interaction domain HQ395_10830 PF06490 Flagellar regulatory protein FleQ HQ395_10835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_10835 PF13188 PAS domain HQ395_10835 PF00512 His Kinase A (phospho-acceptor) domain HQ395_10840 PF00158 Sigma-54 interaction domain HQ395_10840 PF02954 Bacterial regulatory protein, Fis family HQ395_10840 PF00072 Response regulator receiver domain HQ395_10845 PF01784 NIF3 (NGG1p interacting factor 3) HQ395_10850 PF00551 Formyl transferase HQ395_10855 PF02769 AIR synthase related protein, C-terminal domain HQ395_10855 PF00586 AIR synthase related protein, N-terminal domain HQ395_10870 PF00308 Bacterial dnaA protein HQ395_10875 PF00463 Isocitrate lyase family HQ395_10880 PF01274 Malate synthase HQ395_10895 PF14437 MafB19-like deaminase HQ395_10900 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_10905 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_10910 PF00005 ABC transporter HQ395_10915 PF01895 PhoU domain HQ395_10920 PF01595 Cyclin M transmembrane N-terminal domain HQ395_10920 PF03471 Transporter associated domain HQ395_10920 PF00571 CBS domain HQ395_10935 PF13520 Amino acid permease HQ395_10940 PF04116 Fatty acid hydroxylase superfamily HQ395_10955 PF00005 ABC transporter HQ395_10960 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_10965 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_10970 PF00990 Diguanylate cyclase, GGDEF domain HQ395_10975 PF07690 Major Facilitator Superfamily HQ395_10980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_10980 PF05231 MASE1 HQ395_10980 PF07730 Histidine kinase HQ395_10985 PF00196 Bacterial regulatory proteins, luxR family HQ395_10985 PF00072 Response regulator receiver domain HQ395_10990 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ395_10990 PF14760 Rnk N-terminus HQ395_11005 PF00245 Alkaline phosphatase HQ395_11010 PF00245 Alkaline phosphatase HQ395_11015 PF01926 50S ribosome-binding GTPase HQ395_11020 PF07690 Major Facilitator Superfamily HQ395_11025 PF00850 Histone deacetylase domain HQ395_11035 PF06733 DEAD_2 HQ395_11035 PF13307 Helicase C-terminal domain HQ395_11040 PF13609 Gram-negative porin HQ395_11050 PF00155 Aminotransferase class I and II HQ395_11055 PF05872 Bacterial protein of unknown function (DUF853) HQ395_11070 PF00753 Metallo-beta-lactamase superfamily HQ395_11070 PF03772 Competence protein HQ395_11075 PF00664 ABC transporter transmembrane region HQ395_11075 PF00005 ABC transporter HQ395_11080 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HQ395_11085 PF03966 Trm112p-like protein HQ395_11090 PF02348 Cytidylyltransferase HQ395_11095 PF00072 Response regulator receiver domain HQ395_11095 PF00196 Bacterial regulatory proteins, luxR family HQ395_11100 PF02151 UvrB/uvrC motif HQ395_11100 PF01541 GIY-YIG catalytic domain HQ395_11100 PF08459 UvrC Helix-hairpin-helix N-terminal HQ395_11105 PF01066 CDP-alcohol phosphatidyltransferase HQ395_11160 PF04984 Phage tail sheath protein subtilisin-like domain HQ395_11160 PF17482 Phage tail sheath C-terminal domain HQ395_11370 PF00533 BRCA1 C Terminus (BRCT) domain HQ395_11370 PF03120 NAD-dependent DNA ligase OB-fold domain HQ395_11370 PF01653 NAD-dependent DNA ligase adenylation domain HQ395_11370 PF12826 Helix-hairpin-helix motif HQ395_11370 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HQ395_11385 PF02899 Phage integrase, N-terminal SAM-like domain HQ395_11385 PF00589 Phage integrase family HQ395_11405 PF08447 PAS fold HQ395_11405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_11405 PF13426 PAS domain HQ395_11410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_11410 PF00672 HAMP domain HQ395_11415 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HQ395_11420 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ395_11440 PF00037 4Fe-4S binding domain HQ395_11440 PF13247 4Fe-4S dicluster domain HQ395_11445 PF03916 Polysulphide reductase, NrfD HQ395_11450 PF00149 Calcineurin-like phosphoesterase HQ395_11460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ395_11465 PF09190 DALR domain HQ395_11465 PF01406 tRNA synthetases class I (C) catalytic domain HQ395_11485 PF13185 GAF domain HQ395_11485 PF00990 Diguanylate cyclase, GGDEF domain HQ395_11515 PF01169 Uncharacterized protein family UPF0016 HQ395_11520 PF01253 Translation initiation factor SUI1 HQ395_11530 PF07664 Ferrous iron transport protein B C terminus HQ395_11530 PF02421 Ferrous iron transport protein B HQ395_11530 PF07670 Nucleoside recognition HQ395_11545 PF00483 Nucleotidyl transferase HQ395_11550 PF00437 Type II/IV secretion system protein HQ395_11560 PF01627 Hpt domain HQ395_11560 PF00072 Response regulator receiver domain HQ395_11560 PF00989 PAS fold HQ395_11560 PF00512 His Kinase A (phospho-acceptor) domain HQ395_11560 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_11560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_11565 PF01032 FecCD transport family HQ395_11570 PF00005 ABC transporter HQ395_11575 PF00583 Acetyltransferase (GNAT) family HQ395_11580 PF00793 DAHP synthetase I family HQ395_11585 PF01219 Prokaryotic diacylglycerol kinase HQ395_11590 PF01842 ACT domain HQ395_11590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ395_11590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ395_11595 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HQ395_11600 PF01812 5-formyltetrahydrofolate cyclo-ligase family HQ395_11610 PF01113 Dihydrodipicolinate reductase, N-terminus HQ395_11610 PF05173 Dihydrodipicolinate reductase, C-terminus HQ395_11615 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HQ395_11615 PF00117 Glutamine amidotransferase class-I HQ395_11620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ395_11620 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HQ395_11620 PF02142 MGS-like domain HQ395_11625 PF00682 HMGL-like HQ395_11625 PF08502 LeuA allosteric (dimerisation) domain HQ395_11630 PF07759 Protein of unknown function (DUF1615) HQ395_11655 PF13302 Acetyltransferase (GNAT) domain HQ395_11660 PF00271 Helicase conserved C-terminal domain HQ395_11660 PF00270 DEAD/DEAH box helicase HQ395_11670 PF14521 Lysine-specific metallo-endopeptidase HQ395_11685 PF09278 MerR, DNA binding HQ395_11685 PF00376 MerR family regulatory protein HQ395_11700 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_11705 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_11710 PF00005 ABC transporter HQ395_11715 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ395_11715 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_11720 PF00310 Glutamine amidotransferases class-II HQ395_11720 PF04898 Glutamate synthase central domain HQ395_11720 PF01645 Conserved region in glutamate synthase HQ395_11720 PF01493 GXGXG motif HQ395_11725 PF04055 Radical SAM superfamily HQ395_11725 PF16199 Radical_SAM C-terminal domain HQ395_11730 PF00664 ABC transporter transmembrane region HQ395_11730 PF00005 ABC transporter HQ395_11730 PF03412 Peptidase C39 family HQ395_11765 PF00092 von Willebrand factor type A domain HQ395_11780 PF00324 Amino acid permease HQ395_11790 PF03618 Kinase/pyrophosphorylase HQ395_11795 PF00391 PEP-utilising enzyme, mobile domain HQ395_11795 PF02896 PEP-utilising enzyme, TIM barrel domain HQ395_11795 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ395_11805 PF14310 Fibronectin type III-like domain HQ395_11805 PF00933 Glycosyl hydrolase family 3 N terminal domain HQ395_11805 PF01915 Glycosyl hydrolase family 3 C-terminal domain HQ395_11815 PF01483 Proprotein convertase P-domain HQ395_11815 PF00082 Subtilase family HQ395_11835 PF03180 NLPA lipoprotein HQ395_11840 PF01569 PAP2 superfamily HQ395_11845 PF11890 Domain of unknown function (DUF3410) HQ395_11845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ395_11845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ395_11850 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ395_11850 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ395_11860 PF01416 tRNA pseudouridine synthase HQ395_11865 PF01039 Carboxyl transferase domain HQ395_11865 PF17848 Acetyl-coA carboxylase zinc finger domain HQ395_11870 PF02875 Mur ligase family, glutamate ligase domain HQ395_11870 PF08245 Mur ligase middle domain HQ395_11875 PF05036 Sporulation related domain HQ395_11880 PF04358 DsrC like protein HQ395_11885 PF12805 FUSC-like inner membrane protein yccS HQ395_11890 PF01027 Inhibitor of apoptosis-promoting Bax1 HQ395_11905 PF01312 FlhB HrpN YscU SpaS Family HQ395_11910 PF01311 Bacterial export proteins, family 1 HQ395_11915 PF01313 Bacterial export proteins, family 3 HQ395_11925 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ395_11940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ395_11940 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ395_11940 PF18269 T3SS EscN ATPase C-terminal domain HQ395_11945 PF07201 HrpJ-like domain HQ395_11950 PF09059 TyeA HQ395_11960 PF09474 Type III secretion system YscX (type_III_YscX) HQ395_11970 PF00771 FHIPEP family HQ395_11975 PF09621 Type III secretion system regulator (LcrR) HQ395_11985 PF04792 V antigen (LcrV) protein HQ395_11990 PF07720 Tetratricopeptide repeat HQ395_11995 PF04888 Secretion system effector C (SseC) like family HQ395_12000 PF05844 YopD protein HQ395_12005 PF05932 Tir chaperone protein (CesT) family HQ395_12020 PF12833 Helix-turn-helix domain HQ395_12025 PF16806 Antiactivator protein ExsD HQ395_12035 PF03958 Bacterial type II/III secretion system short domain HQ395_12035 PF00263 Bacterial type II and III secretion system protein HQ395_12040 PF16697 Inner membrane component of T3SS, cytoplasmic domain HQ395_12040 PF16693 Inner membrane component of T3SS, periplasmic domain HQ395_12050 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HQ395_12055 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) HQ395_12060 PF09025 YopR, type III needle-polymerisation regulator HQ395_12065 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI HQ395_12070 PF01514 Secretory protein of YscJ/FliF family HQ395_12080 PF02108 Flagellar assembly protein FliH HQ395_12095 PF08019 Phosphoethanolamine transferase EptA/EptB HQ395_12095 PF00884 Sulfatase HQ395_12100 PF03706 Lysylphosphatidylglycerol synthase TM region HQ395_12100 PF09924 Uncharacterised conserved protein (DUF2156) HQ395_12110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_12110 PF08447 PAS fold HQ395_12115 PF00990 Diguanylate cyclase, GGDEF domain HQ395_12115 PF00563 EAL domain HQ395_12115 PF13426 PAS domain HQ395_12120 PF00849 RNA pseudouridylate synthase HQ395_12130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ395_12135 PF04209 homogentisate 1,2-dioxygenase HQ395_12145 PF14497 Glutathione S-transferase, C-terminal domain HQ395_12145 PF02798 Glutathione S-transferase, N-terminal domain HQ395_12150 PF00043 Glutathione S-transferase, C-terminal domain HQ395_12150 PF13417 Glutathione S-transferase, N-terminal domain HQ395_12160 PF13537 Glutamine amidotransferase domain HQ395_12160 PF00733 Asparagine synthase HQ395_12170 PF02254 TrkA-N domain HQ395_12170 PF00999 Sodium/hydrogen exchanger family HQ395_12175 PF13344 Haloacid dehalogenase-like hydrolase HQ395_12180 PF00962 Adenosine/AMP deaminase HQ395_12185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ395_12190 PF03471 Transporter associated domain HQ395_12190 PF03741 Integral membrane protein TerC family HQ395_12200 PF02913 FAD linked oxidases, C-terminal domain HQ395_12200 PF13183 4Fe-4S dicluster domain HQ395_12200 PF01565 FAD binding domain HQ395_12210 PF03061 Thioesterase superfamily HQ395_12215 PF00270 DEAD/DEAH box helicase HQ395_12215 PF03880 DbpA RNA binding domain HQ395_12215 PF00271 Helicase conserved C-terminal domain HQ395_12220 PF03553 Na+/H+ antiporter family HQ395_12220 PF13726 Na+-H+ antiporter family HQ395_12225 PF00929 Exonuclease HQ395_12230 PF12729 Four helix bundle sensory module for signal transduction HQ395_12230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_12230 PF00672 HAMP domain HQ395_12235 PF18393 MotY N-terminal domain HQ395_12235 PF00691 OmpA family HQ395_12240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ395_12245 PF00633 Helix-hairpin-helix motif HQ395_12245 PF10576 Iron-sulfur binding domain of endonuclease III HQ395_12245 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ395_12250 PF02508 Rnf-Nqr subunit, membrane protein HQ395_12255 PF04205 FMN-binding domain HQ395_12260 PF03116 NQR2, RnfD, RnfE family HQ395_12265 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ395_12265 PF12838 4Fe-4S dicluster domain HQ395_12265 PF13375 RnfC Barrel sandwich hybrid domain HQ395_12265 PF10531 SLBB domain HQ395_12270 PF04060 Putative Fe-S cluster HQ395_12275 PF02508 Rnf-Nqr subunit, membrane protein HQ395_12280 PF00892 EamA-like transporter family HQ395_12290 PF13426 PAS domain HQ395_12290 PF08447 PAS fold HQ395_12290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_12295 PF07055 Enoyl reductase FAD binding domain HQ395_12295 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ395_12295 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ395_12300 PF03606 C4-dicarboxylate anaerobic carrier HQ395_12305 PF00155 Aminotransferase class I and II HQ395_12315 PF00462 Glutaredoxin HQ395_12320 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HQ395_12325 PF04851 Type III restriction enzyme, res subunit HQ395_12325 PF00271 Helicase conserved C-terminal domain HQ395_12330 PF00529 HlyD membrane-fusion protein of T1SS HQ395_12330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_12335 PF11742 Protein of unknown function (DUF3302) HQ395_12340 PF02554 Carbon starvation protein CstA HQ395_12345 PF00072 Response regulator receiver domain HQ395_12345 PF04397 LytTr DNA-binding domain HQ395_12350 PF06580 Histidine kinase HQ395_12350 PF07694 5TMR of 5TMR-LYT HQ395_12355 PF01966 HD domain HQ395_12360 PF00465 Iron-containing alcohol dehydrogenase HQ395_12360 PF00171 Aldehyde dehydrogenase family HQ395_12370 PF01914 MarC family integral membrane protein HQ395_12375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_12380 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_12385 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_12385 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ395_12390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_12390 PF00005 ABC transporter HQ395_12395 PF00005 ABC transporter HQ395_12395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_12400 PF03741 Integral membrane protein TerC family HQ395_12405 PF00842 Alanine racemase, C-terminal domain HQ395_12405 PF01168 Alanine racemase, N-terminal domain HQ395_12415 PF00375 Sodium:dicarboxylate symporter family HQ395_12430 PF01979 Amidohydrolase family HQ395_12440 PF00672 HAMP domain HQ395_12440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_12445 PF01230 HIT domain HQ395_12480 PF07549 SecD/SecF GG Motif HQ395_12480 PF13721 SecD export protein N-terminal TM region HQ395_12480 PF02355 Protein export membrane protein HQ395_12485 PF02355 Protein export membrane protein HQ395_12485 PF07549 SecD/SecF GG Motif HQ395_12500 PF05661 Protein of unknown function (DUF808) HQ395_12505 PF08439 Oligopeptidase F HQ395_12505 PF01432 Peptidase family M3 HQ395_12510 PF08439 Oligopeptidase F HQ395_12510 PF01432 Peptidase family M3 HQ395_12515 PF00860 Permease family HQ395_12520 PF05728 Uncharacterised protein family (UPF0227) HQ395_12525 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_12545 PF01906 Putative heavy-metal-binding HQ395_12560 PF13187 4Fe-4S dicluster domain HQ395_12560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ395_12560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ395_12565 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HQ395_12565 PF00175 Oxidoreductase NAD-binding domain HQ395_12570 PF17179 4Fe-4S dicluster domain HQ395_12575 PF01734 Patatin-like phospholipase HQ395_12580 PF02016 LD-carboxypeptidase N-terminal domain HQ395_12580 PF17676 LD-carboxypeptidase C-terminal domain HQ395_12585 PF00884 Sulfatase HQ395_12595 PF01842 ACT domain HQ395_12595 PF00696 Amino acid kinase family HQ395_12605 PF01625 Peptide methionine sulfoxide reductase HQ395_12625 PF00561 alpha/beta hydrolase fold HQ395_12630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ395_12640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_12640 PF03466 LysR substrate binding domain HQ395_12645 PF02652 L-lactate permease HQ395_12650 PF02754 Cysteine-rich domain HQ395_12660 PF02589 LUD domain HQ395_12700 PF07690 Major Facilitator Superfamily HQ395_12715 PF01593 Flavin containing amine oxidoreductase HQ395_12720 PF03239 Iron permease FTR1 family HQ395_12735 PF03350 Uncharacterized protein family, UPF0114 HQ395_12750 PF01740 STAS domain HQ395_12750 PF00916 Sulfate permease family HQ395_12775 PF00239 Resolvase, N terminal domain HQ395_12775 PF02796 Helix-turn-helix domain of resolvase HQ395_12795 PF01168 Alanine racemase, N-terminal domain HQ395_12795 PF00842 Alanine racemase, C-terminal domain HQ395_12800 PF12729 Four helix bundle sensory module for signal transduction HQ395_12800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_12800 PF00672 HAMP domain HQ395_12805 PF00990 Diguanylate cyclase, GGDEF domain HQ395_12805 PF00563 EAL domain HQ395_12805 PF03707 Bacterial signalling protein N terminal repeat HQ395_12810 PF00072 Response regulator receiver domain HQ395_12810 PF01339 CheB methylesterase HQ395_12815 PF01739 CheR methyltransferase, SAM binding domain HQ395_12815 PF03705 CheR methyltransferase, all-alpha domain HQ395_12820 PF01584 CheW-like domain HQ395_12825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_12825 PF00672 HAMP domain HQ395_12825 PF17202 Single cache domain 3 HQ395_12830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_12830 PF01627 Hpt domain HQ395_12830 PF09078 CheY binding HQ395_12830 PF02895 Signal transducing histidine kinase, homodimeric domain HQ395_12830 PF01584 CheW-like domain HQ395_12840 PF00072 Response regulator receiver domain HQ395_12845 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HQ395_12845 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ395_12850 PF13247 4Fe-4S dicluster domain HQ395_12860 PF00374 Nickel-dependent hydrogenase HQ395_12865 PF01750 Hydrogenase maturation protease HQ395_12870 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HQ395_12875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_12880 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_12885 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_12885 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ395_12890 PF00005 ABC transporter HQ395_12890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_12895 PF00005 ABC transporter HQ395_12900 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ395_12905 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HQ395_12910 PF00586 AIR synthase related protein, N-terminal domain HQ395_12910 PF02769 AIR synthase related protein, C-terminal domain HQ395_12915 PF01924 Hydrogenase formation hypA family HQ395_12920 PF01455 HupF/HypC family HQ395_12925 PF00708 Acylphosphatase HQ395_12925 PF17788 HypF Kae1-like domain HQ395_12925 PF01300 Telomere recombination HQ395_12925 PF07503 HypF finger HQ395_12930 PF00009 Elongation factor Tu GTP binding domain HQ395_12930 PF03144 Elongation factor Tu domain 2 HQ395_12930 PF09105 Elongation factor SelB, winged helix HQ395_12930 PF09106 Elongation factor SelB, winged helix HQ395_12930 PF09107 Elongation factor SelB, winged helix HQ395_12935 PF12390 Selenocysteine synthase N terminal HQ395_12935 PF03841 L-seryl-tRNA selenium transferase HQ395_12945 PF01750 Hydrogenase maturation protease HQ395_12950 PF07450 Formate hydrogenlyase maturation protein HycH HQ395_12955 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ395_12960 PF12838 4Fe-4S dicluster domain HQ395_12965 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ395_12965 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ395_12965 PF00374 Nickel-dependent hydrogenase HQ395_12970 PF00146 NADH dehydrogenase HQ395_12975 PF00361 Proton-conducting membrane transporter HQ395_12980 PF00037 4Fe-4S binding domain HQ395_12980 PF12798 4Fe-4S binding domain HQ395_12985 PF02705 K+ potassium transporter HQ395_13000 PF13247 4Fe-4S dicluster domain HQ395_13000 PF12800 4Fe-4S binding domain HQ395_13015 PF01590 GAF domain HQ395_13015 PF02954 Bacterial regulatory protein, Fis family HQ395_13015 PF00158 Sigma-54 interaction domain HQ395_13020 PF02634 FdhD/NarQ family HQ395_13025 PF02132 RecR protein HQ395_13025 PF13662 Toprim domain HQ395_13030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_13030 PF00183 Hsp90 protein HQ395_13035 PF05191 Adenylate kinase, active site lid HQ395_13040 PF00762 Ferrochelatase HQ395_13050 PF00294 pfkB family carbohydrate kinase HQ395_13065 PF00563 EAL domain HQ395_13065 PF00990 Diguanylate cyclase, GGDEF domain HQ395_13065 PF03707 Bacterial signalling protein N terminal repeat HQ395_13070 PF00483 Nucleotidyl transferase HQ395_13080 PF07273 Protein of unknown function (DUF1439) HQ395_13085 PF00425 chorismate binding enzyme HQ395_13090 PF13193 AMP-binding enzyme C-terminal domain HQ395_13090 PF00501 AMP-binding enzyme HQ395_13095 PF00550 Phosphopantetheine attachment site HQ395_13095 PF00857 Isochorismatase family HQ395_13100 PF13193 AMP-binding enzyme C-terminal domain HQ395_13100 PF00501 AMP-binding enzyme HQ395_13100 PF00668 Condensation domain HQ395_13100 PF00550 Phosphopantetheine attachment site HQ395_13100 PF00975 Thioesterase domain HQ395_13110 PF00668 Condensation domain HQ395_13110 PF00550 Phosphopantetheine attachment site HQ395_13110 PF07993 Male sterility protein HQ395_13110 PF13193 AMP-binding enzyme C-terminal domain HQ395_13110 PF00501 AMP-binding enzyme HQ395_13115 PF00975 Thioesterase domain HQ395_13115 PF00668 Condensation domain HQ395_13115 PF13193 AMP-binding enzyme C-terminal domain HQ395_13115 PF00501 AMP-binding enzyme HQ395_13115 PF00550 Phosphopantetheine attachment site HQ395_13120 PF01497 Periplasmic binding protein HQ395_13125 PF01648 4'-phosphopantetheinyl transferase superfamily HQ395_13125 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HQ395_13130 PF00005 ABC transporter HQ395_13135 PF01032 FecCD transport family HQ395_13140 PF01032 FecCD transport family HQ395_13145 PF07715 TonB-dependent Receptor Plug Domain HQ395_13145 PF00593 TonB dependent receptor HQ395_13160 PF11143 Protein of unknown function (DUF2919) HQ395_13165 PF01544 CorA-like Mg2+ transporter protein HQ395_13175 PF01012 Electron transfer flavoprotein domain HQ395_13180 PF00766 Electron transfer flavoprotein FAD-binding domain HQ395_13180 PF01012 Electron transfer flavoprotein domain HQ395_13185 PF00266 Aminotransferase class-V HQ395_13190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ395_13195 PF00793 DAHP synthetase I family HQ395_13200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_13200 PF00672 HAMP domain HQ395_13205 PF04055 Radical SAM superfamily HQ395_13210 PF02601 Exonuclease VII, large subunit HQ395_13210 PF13742 OB-fold nucleic acid binding domain HQ395_13220 PF02472 Biopolymer transport protein ExbD/TolR HQ395_13225 PF01618 MotA/TolQ/ExbB proton channel family HQ395_13235 PF02705 K+ potassium transporter HQ395_13240 PF00571 CBS domain HQ395_13240 PF00478 IMP dehydrogenase / GMP reductase domain HQ395_13245 PF00117 Glutamine amidotransferase class-I HQ395_13245 PF00958 GMP synthase C terminal domain HQ395_13245 PF02540 NAD synthase HQ395_13270 PF02805 Metal binding domain of Ada HQ395_13270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ395_13270 PF12833 Helix-turn-helix domain HQ395_13270 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ395_13285 PF05724 Thiopurine S-methyltransferase (TPMT) HQ395_13290 PF05193 Peptidase M16 inactive domain HQ395_13290 PF00675 Insulinase (Peptidase family M16) HQ395_13295 PF00300 Histidine phosphatase superfamily (branch 1) HQ395_13305 PF00892 EamA-like transporter family HQ395_13310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_13315 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HQ395_13320 PF02559 CarD-like/TRCF domain HQ395_13320 PF00270 DEAD/DEAH box helicase HQ395_13320 PF00271 Helicase conserved C-terminal domain HQ395_13320 PF17757 UvrB interaction domain HQ395_13320 PF03461 TRCF domain HQ395_13330 PF02687 FtsX-like permease family HQ395_13330 PF12704 MacB-like periplasmic core domain HQ395_13335 PF00005 ABC transporter HQ395_13340 PF02687 FtsX-like permease family HQ395_13340 PF12704 MacB-like periplasmic core domain HQ395_13355 PF05697 Bacterial trigger factor protein (TF) HQ395_13355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ395_13355 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ395_13360 PF00574 Clp protease HQ395_13365 PF07724 AAA domain (Cdc48 subfamily) HQ395_13365 PF10431 C-terminal, D2-small domain, of ClpB protein HQ395_13365 PF06689 ClpX C4-type zinc finger HQ395_13370 PF02190 ATP-dependent protease La (LON) substrate-binding domain HQ395_13370 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ395_13370 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_13375 PF00216 Bacterial DNA-binding protein HQ395_13380 PF13145 PPIC-type PPIASE domain HQ395_13385 PF00005 ABC transporter HQ395_13385 PF12848 ABC transporter HQ395_13390 PF00474 Sodium:solute symporter family HQ395_13395 PF04341 Protein of unknown function, DUF485 HQ395_13410 PF00378 Enoyl-CoA hydratase/isomerase HQ395_13570 PF00717 Peptidase S24-like HQ395_13635 PF06892 Phage regulatory protein CII (CP76) HQ395_13650 PF00717 Peptidase S24-like HQ395_13650 PF01381 Helix-turn-helix HQ395_13665 PF02899 Phage integrase, N-terminal SAM-like domain HQ395_13665 PF00589 Phage integrase family HQ395_13670 PF01235 Sodium:alanine symporter family HQ395_13680 PF06167 Glucose-regulated metallo-peptidase M90 HQ395_13685 PF01184 GPR1/FUN34/yaaH family HQ395_13700 PF00376 MerR family regulatory protein HQ395_13700 PF09278 MerR, DNA binding HQ395_13705 PF00682 HMGL-like HQ395_13710 PF02785 Biotin carboxylase C-terminal domain HQ395_13710 PF00289 Biotin carboxylase, N-terminal domain HQ395_13710 PF00364 Biotin-requiring enzyme HQ395_13710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ395_13715 PF00378 Enoyl-CoA hydratase/isomerase HQ395_13720 PF01039 Carboxyl transferase domain HQ395_13725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ395_13725 PF02770 Acyl-CoA dehydrogenase, middle domain HQ395_13725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ395_13730 PF00171 Aldehyde dehydrogenase family HQ395_13735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ395_13735 PF02770 Acyl-CoA dehydrogenase, middle domain HQ395_13735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ395_13740 PF00378 Enoyl-CoA hydratase/isomerase HQ395_13745 PF00378 Enoyl-CoA hydratase/isomerase HQ395_13750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ395_13750 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ395_13760 PF13520 Amino acid permease HQ395_13765 PF01925 Sulfite exporter TauE/SafE HQ395_13775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_13775 PF03466 LysR substrate binding domain HQ395_13780 PF00248 Aldo/keto reductase family HQ395_13785 PF00248 Aldo/keto reductase family HQ395_13790 PF00990 Diguanylate cyclase, GGDEF domain HQ395_13790 PF07694 5TMR of 5TMR-LYT HQ395_13795 PF03466 LysR substrate binding domain HQ395_13795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_13800 PF00232 Glycosyl hydrolase family 1 HQ395_13805 PF13188 PAS domain HQ395_13805 PF00563 EAL domain HQ395_13805 PF00990 Diguanylate cyclase, GGDEF domain HQ395_13805 PF03707 Bacterial signalling protein N terminal repeat HQ395_13815 PF01966 HD domain HQ395_13825 PF03466 LysR substrate binding domain HQ395_13825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_13830 PF01261 Xylose isomerase-like TIM barrel HQ395_13835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ395_13835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ395_13840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_13840 PF03466 LysR substrate binding domain HQ395_13850 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ395_13855 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ395_13870 PF00990 Diguanylate cyclase, GGDEF domain HQ395_13880 PF00136 DNA polymerase family B HQ395_13880 PF03104 DNA polymerase family B, exonuclease domain HQ395_13910 PF01554 MatE HQ395_13915 PF06786 Uncharacterised protein family (UPF0253) HQ395_13920 PF00677 Lumazine binding domain HQ395_13930 PF13419 Haloacid dehalogenase-like hydrolase HQ395_13935 PF02222 ATP-grasp domain HQ395_13935 PF01370 NAD dependent epimerase/dehydratase family HQ395_13945 PF02525 Flavodoxin-like fold HQ395_13970 PF13509 S1 domain HQ395_13970 PF17783 CvfB-like winged helix domain HQ395_13980 PF04269 Protein of unknown function, DUF440 HQ395_13985 PF00912 Transglycosylase HQ395_13990 PF04269 Protein of unknown function, DUF440 HQ395_13995 PF03776 Septum formation topological specificity factor MinE HQ395_14000 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HQ395_14005 PF05209 Septum formation inhibitor MinC, N-terminal domain HQ395_14005 PF03775 Septum formation inhibitor MinC, C-terminal domain HQ395_14010 PF05166 YcgL domain HQ395_14015 PF13406 Transglycosylase SLT domain HQ395_14020 PF03315 Serine dehydratase beta chain HQ395_14020 PF03313 Serine dehydratase alpha chain HQ395_14025 PF03315 Serine dehydratase beta chain HQ395_14025 PF03313 Serine dehydratase alpha chain HQ395_14035 PF00375 Sodium:dicarboxylate symporter family HQ395_14040 PF00376 MerR family regulatory protein HQ395_14040 PF09278 MerR, DNA binding HQ395_14045 PF00108 Thiolase, N-terminal domain HQ395_14045 PF02803 Thiolase, C-terminal domain HQ395_14050 PF08668 HDOD domain HQ395_14050 PF00563 EAL domain HQ395_14055 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ395_14065 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ395_14075 PF08281 Sigma-70, region 4 HQ395_14075 PF04542 Sigma-70 region 2 HQ395_14100 PF01882 Protein of unknown function DUF58 HQ395_14105 PF07726 ATPase family associated with various cellular activities (AAA) HQ395_14105 PF17863 AAA lid domain HQ395_14110 PF02803 Thiolase, C-terminal domain HQ395_14110 PF00108 Thiolase, N-terminal domain HQ395_14115 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ395_14115 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ395_14115 PF00378 Enoyl-CoA hydratase/isomerase HQ395_14125 PF07152 YaeQ protein HQ395_14135 PF00717 Peptidase S24-like HQ395_14135 PF01381 Helix-turn-helix HQ395_14240 PF08461 Ribonuclease R winged-helix domain HQ395_14245 PF11985 Protein of unknown function (DUF3486) HQ395_14250 PF03237 Terminase-like family HQ395_14255 PF06074 Protein of unknown function (DUF935) HQ395_14290 PF10123 Mu-like prophage I protein HQ395_14295 PF10124 Mu-like prophage major head subunit gpT HQ395_14405 PF02954 Bacterial regulatory protein, Fis family HQ395_14405 PF13188 PAS domain HQ395_14405 PF00158 Sigma-54 interaction domain HQ395_14410 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ395_14410 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ395_14415 PF00291 Pyridoxal-phosphate dependent enzyme HQ395_14420 PF07687 Peptidase dimerisation domain HQ395_14420 PF01546 Peptidase family M20/M25/M40 HQ395_14425 PF01979 Amidohydrolase family HQ395_14430 PF00696 Amino acid kinase family HQ395_14435 PF00892 EamA-like transporter family HQ395_14440 PF02625 XdhC and CoxI family HQ395_14440 PF13478 XdhC Rossmann domain HQ395_14455 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_14455 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ395_14460 PF01979 Amidohydrolase family HQ395_14465 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ395_14475 PF00860 Permease family HQ395_14480 PF01979 Amidohydrolase family HQ395_14485 PF00860 Permease family HQ395_14490 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ395_14490 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ395_14495 PF03450 CO dehydrogenase flavoprotein C-terminal domain HQ395_14495 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ395_14500 PF01799 [2Fe-2S] binding domain HQ395_14500 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ395_14510 PF05433 Glycine zipper 2TM domain HQ395_14520 PF03606 C4-dicarboxylate anaerobic carrier HQ395_14525 PF13193 AMP-binding enzyme C-terminal domain HQ395_14525 PF00501 AMP-binding enzyme HQ395_14535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HQ395_14535 PF01502 Phosphoribosyl-AMP cyclohydrolase HQ395_14540 PF00977 Histidine biosynthesis protein HQ395_14545 PF00512 His Kinase A (phospho-acceptor) domain HQ395_14545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_14545 PF00072 Response regulator receiver domain HQ395_14545 PF01627 Hpt domain HQ395_14550 PF08448 PAS fold HQ395_14550 PF00990 Diguanylate cyclase, GGDEF domain HQ395_14555 PF00072 Response regulator receiver domain HQ395_14560 PF00977 Histidine biosynthesis protein HQ395_14565 PF00117 Glutamine amidotransferase class-I HQ395_14570 PF00475 Imidazoleglycerol-phosphate dehydratase HQ395_14570 PF08645 Polynucleotide kinase 3 phosphatase HQ395_14575 PF00155 Aminotransferase class I and II HQ395_14580 PF00815 Histidinol dehydrogenase HQ395_14585 PF01634 ATP phosphoribosyltransferase HQ395_14585 PF08029 HisG, C-terminal domain HQ395_14595 PF13307 Helicase C-terminal domain HQ395_14595 PF04851 Type III restriction enzyme, res subunit HQ395_14600 PF00814 Glycoprotease family HQ395_14610 PF12697 Alpha/beta hydrolase family HQ395_14610 PF08241 Methyltransferase domain HQ395_14615 PF00501 AMP-binding enzyme HQ395_14615 PF13193 AMP-binding enzyme C-terminal domain HQ395_14620 PF00570 HRDC domain HQ395_14620 PF01612 3'-5' exonuclease HQ395_14625 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_14635 PF01207 Dihydrouridine synthase (Dus) HQ395_14640 PF04304 Protein of unknown function (DUF454) HQ395_14645 PF00156 Phosphoribosyl transferase domain HQ395_14650 PF12170 DNA polymerase III tau subunit V interacting with alpha HQ395_14650 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HQ395_14650 PF12169 DNA polymerase III subunits gamma and tau domain III HQ395_14655 PF02575 YbaB/EbfC DNA-binding family HQ395_14670 PF00196 Bacterial regulatory proteins, luxR family HQ395_14670 PF00072 Response regulator receiver domain HQ395_14675 PF02272 DHHA1 domain HQ395_14675 PF01743 Poly A polymerase head domain HQ395_14675 PF00571 CBS domain HQ395_14675 PF01368 DHH family HQ395_14680 PF00271 Helicase conserved C-terminal domain HQ395_14680 PF00270 DEAD/DEAH box helicase HQ395_14680 PF11898 Domain of unknown function (DUF3418) HQ395_14680 PF04408 Helicase associated domain (HA2) HQ395_14680 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HQ395_14690 PF01386 Ribosomal L25p family HQ395_14700 PF00072 Response regulator receiver domain HQ395_14705 PF00753 Metallo-beta-lactamase superfamily HQ395_14715 PF02769 AIR synthase related protein, C-terminal domain HQ395_14715 PF00586 AIR synthase related protein, N-terminal domain HQ395_14730 PF17785 PUA-like domain HQ395_14730 PF10672 S-adenosylmethionine-dependent methyltransferase HQ395_14735 PF00672 HAMP domain HQ395_14735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_14740 PF00708 Acylphosphatase HQ395_14745 PF00043 Glutathione S-transferase, C-terminal domain HQ395_14745 PF02798 Glutathione S-transferase, N-terminal domain HQ395_14755 PF09334 tRNA synthetases class I (M) HQ395_14755 PF08264 Anticodon-binding domain of tRNA HQ395_14755 PF01588 Putative tRNA binding domain HQ395_14760 PF10609 NUBPL iron-transfer P-loop NTPase HQ395_14765 PF00485 Phosphoribulokinase / Uridine kinase family HQ395_14770 PF00692 dUTPase HQ395_14775 PF01384 Phosphate transporter family HQ395_14780 PF12111 Polyribonucleotide phosphorylase C terminal HQ395_14780 PF10150 Ribonuclease E/G family HQ395_14780 PF00575 S1 RNA binding domain HQ395_14785 PF00849 RNA pseudouridylate synthase HQ395_14785 PF01479 S4 domain HQ395_14790 PF13419 Haloacid dehalogenase-like hydrolase HQ395_14795 PF02545 Maf-like protein HQ395_14800 PF07690 Major Facilitator Superfamily HQ395_14805 PF03466 LysR substrate binding domain HQ395_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_14815 PF02620 Large ribosomal RNA subunit accumulation protein YceD HQ395_14820 PF01783 Ribosomal L32p protein family HQ395_14825 PF02504 Fatty acid synthesis protein HQ395_14830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ395_14830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ395_14835 PF00698 Acyl transferase domain HQ395_14845 PF00550 Phosphopantetheine attachment site HQ395_14850 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ395_14850 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ395_14855 PF01063 Amino-transferase class IV HQ395_14860 PF02618 YceG-like family HQ395_14865 PF02223 Thymidylate kinase HQ395_14870 PF09115 DNA polymerase III, delta subunit, C terminal HQ395_14875 PF01026 TatD related DNase HQ395_14880 PF00589 Phage integrase family HQ395_14890 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HQ395_14890 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HQ395_14890 PF01189 16S rRNA methyltransferase RsmB/F HQ395_14895 PF02470 MlaD protein HQ395_14900 PF04403 Paraquat-inducible protein A HQ395_14915 PF00285 Citrate synthase, C-terminal domain HQ395_14920 PF03972 MmgE/PrpD family HQ395_14935 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HQ395_14935 PF06974 Protein of unknown function (DUF1298) HQ395_14960 PF00106 short chain dehydrogenase HQ395_14970 PF07130 YebG protein HQ395_14980 PF13654 AAA domain HQ395_14980 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ395_14985 PF07977 FabA-like domain HQ395_14990 PF04957 Ribosome modulation factor HQ395_15000 PF00005 ABC transporter HQ395_15000 PF12848 ABC transporter HQ395_15000 PF16326 ABC transporter C-terminal domain HQ395_15010 PF01170 Putative RNA methylase family UPF0020 HQ395_15010 PF02926 THUMP domain HQ395_15010 PF10672 S-adenosylmethionine-dependent methyltransferase HQ395_15015 PF07126 Cell-division protein ZapC HQ395_15020 PF01180 Dihydroorotate dehydrogenase HQ395_15025 PF05088 Bacterial NAD-glutamate dehydrogenase HQ395_15035 PF11940 Domain of unknown function (DUF3458) Ig-like fold HQ395_15035 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HQ395_15035 PF01433 Peptidase family M1 domain HQ395_15040 PF17804 Tail specific protease N-terminal domain HQ395_15040 PF03572 Peptidase family S41 HQ395_15040 PF00595 PDZ domain HQ395_15040 PF11818 C-terminal domain of tail specific protease (DUF3340) HQ395_15045 PF04352 ProQ/FINO family HQ395_15045 PF17516 ProQ C-terminal domain HQ395_15050 PF13185 GAF domain HQ395_15060 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ395_15075 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HQ395_15075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ395_15085 PF00403 Heavy-metal-associated domain HQ395_15100 PF13545 Crp-like helix-turn-helix domain HQ395_15100 PF00027 Cyclic nucleotide-binding domain HQ395_15105 PF00582 Universal stress protein family HQ395_15110 PF01171 PP-loop family HQ395_15125 PF02798 Glutathione S-transferase, N-terminal domain HQ395_15125 PF00043 Glutathione S-transferase, C-terminal domain HQ395_15130 PF05025 RbsD / FucU transport protein family HQ395_15135 PF00005 ABC transporter HQ395_15140 PF02653 Branched-chain amino acid transport system / permease component HQ395_15145 PF13407 Periplasmic binding protein domain HQ395_15150 PF00294 pfkB family carbohydrate kinase HQ395_15155 PF00356 Bacterial regulatory proteins, lacI family HQ395_15160 PF03707 Bacterial signalling protein N terminal repeat HQ395_15160 PF00563 EAL domain HQ395_15160 PF00990 Diguanylate cyclase, GGDEF domain HQ395_15170 PF02146 Sir2 family HQ395_15185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_15185 PF00512 His Kinase A (phospho-acceptor) domain HQ395_15185 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ395_15185 PF00072 Response regulator receiver domain HQ395_15190 PF00216 Bacterial DNA-binding protein HQ395_15195 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HQ395_15195 PF01588 Putative tRNA binding domain HQ395_15195 PF03147 Ferredoxin-fold anticodon binding domain HQ395_15195 PF03483 B3/4 domain HQ395_15195 PF03484 tRNA synthetase B5 domain HQ395_15200 PF01409 tRNA synthetases class II core domain (F) HQ395_15200 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HQ395_15205 PF02899 Phage integrase, N-terminal SAM-like domain HQ395_15205 PF00589 Phage integrase family HQ395_15330 PF00453 Ribosomal protein L20 HQ395_15335 PF01632 Ribosomal protein L35 HQ395_15340 PF00707 Translation initiation factor IF-3, C-terminal domain HQ395_15340 PF05198 Translation initiation factor IF-3, N-terminal domain HQ395_15345 PF03129 Anticodon binding domain HQ395_15345 PF02824 TGS domain HQ395_15345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ395_15345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ395_15355 PF04055 Radical SAM superfamily HQ395_15365 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ395_15365 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ395_15375 PF13419 Haloacid dehalogenase-like hydrolase HQ395_15380 PF03477 ATP cone domain HQ395_15380 PF02867 Ribonucleotide reductase, barrel domain HQ395_15380 PF00317 Ribonucleotide reductase, all-alpha domain HQ395_15385 PF00268 Ribonucleotide reductase, small chain HQ395_15390 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ395_15395 PF03562 MltA specific insert domain HQ395_15395 PF06725 3D domain HQ395_15400 PF06945 Protein of unknown function (DUF1289) HQ395_15410 PF03613 PTS system mannose/fructose/sorbose family IID component HQ395_15415 PF03609 PTS system sorbose-specific iic component HQ395_15420 PF03610 PTS system fructose IIA component HQ395_15420 PF03830 PTS system sorbose subfamily IIB component HQ395_15435 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ395_15435 PF00356 Bacterial regulatory proteins, lacI family HQ395_15440 PF06560 Glucose-6-phosphate isomerase (GPI) HQ395_15445 PF02378 Phosphotransferase system, EIIC HQ395_15445 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ395_15450 PF00294 pfkB family carbohydrate kinase HQ395_15455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ395_15455 PF00381 PTS HPr component phosphorylation site HQ395_15460 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ395_15460 PF00356 Bacterial regulatory proteins, lacI family HQ395_15465 PF03222 Tryptophan/tyrosine permease family HQ395_15475 PF03466 LysR substrate binding domain HQ395_15475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_15480 PF00271 Helicase conserved C-terminal domain HQ395_15480 PF00270 DEAD/DEAH box helicase HQ395_15490 PF01264 Chorismate synthase HQ395_15495 PF05175 Methyltransferase small domain HQ395_15500 PF01713 Smr domain HQ395_15510 PF08448 PAS fold HQ395_15510 PF00990 Diguanylate cyclase, GGDEF domain HQ395_15515 PF00300 Histidine phosphatase superfamily (branch 1) HQ395_15530 PF08329 Chitinase A, N-terminal domain HQ395_15530 PF00704 Glycosyl hydrolases family 18 HQ395_15540 PF03831 PhnA domain HQ395_15540 PF08274 PhnA Zinc-Ribbon HQ395_15555 PF02567 Phenazine biosynthesis-like protein HQ395_15585 PF01327 Polypeptide deformylase HQ395_15595 PF03330 Lytic transglycolase HQ395_15600 PF04310 MukB N-terminal HQ395_15600 PF16330 MukB hinge domain HQ395_15605 PF04288 MukE-like family HQ395_15610 PF03882 MukF winged-helix domain HQ395_15610 PF17192 MukF middle domain HQ395_15610 PF17193 MukF C-terminal domain HQ395_15620 PF02698 DUF218 domain HQ395_15625 PF00121 Triosephosphate isomerase HQ395_15630 PF00365 Phosphofructokinase HQ395_15635 PF07687 Peptidase dimerisation domain HQ395_15635 PF01546 Peptidase family M20/M25/M40 HQ395_15640 PF13419 Haloacid dehalogenase-like hydrolase HQ395_15645 PF00883 Cytosol aminopeptidase family, catalytic domain HQ395_15645 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ395_15690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ395_15690 PF00128 Alpha amylase, catalytic domain HQ395_15700 PF11398 Protein of unknown function (DUF2813) HQ395_15705 PF14525 AraC-binding-like domain HQ395_15705 PF12833 Helix-turn-helix domain HQ395_15715 PF03466 LysR substrate binding domain HQ395_15715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_15720 PF01925 Sulfite exporter TauE/SafE HQ395_15725 PF03942 DTW domain HQ395_15730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ395_15730 PF18029 Glyoxalase-like domain HQ395_15735 PF07478 D-ala D-ala ligase C-terminus HQ395_15735 PF01820 D-ala D-ala ligase N-terminus HQ395_15745 PF00255 Glutathione peroxidase HQ395_15750 PF00271 Helicase conserved C-terminal domain HQ395_15750 PF00270 DEAD/DEAH box helicase HQ395_15755 PF13673 Acetyltransferase (GNAT) domain HQ395_15765 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HQ395_15775 PF01928 CYTH domain HQ395_15785 PF00583 Acetyltransferase (GNAT) family HQ395_15790 PF00465 Iron-containing alcohol dehydrogenase HQ395_15795 PF03992 Antibiotic biosynthesis monooxygenase HQ395_15800 PF08543 Phosphomethylpyrimidine kinase HQ395_15820 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HQ395_15820 PF00561 alpha/beta hydrolase fold HQ395_15825 PF01575 MaoC like domain HQ395_15840 PF00664 ABC transporter transmembrane region HQ395_15840 PF00005 ABC transporter HQ395_15845 PF00664 ABC transporter transmembrane region HQ395_15845 PF00005 ABC transporter HQ395_15850 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ395_15850 PF00072 Response regulator receiver domain HQ395_15850 PF01627 Hpt domain HQ395_15850 PF00512 His Kinase A (phospho-acceptor) domain HQ395_15850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_15850 PF00672 HAMP domain HQ395_15855 PF00085 Thioredoxin HQ395_15860 PF00939 Sodium:sulfate symporter transmembrane region HQ395_15885 PF04715 Anthranilate synthase component I, N terminal region HQ395_15885 PF00425 chorismate binding enzyme HQ395_15890 PF00293 NUDIX domain HQ395_15895 PF03222 Tryptophan/tyrosine permease family HQ395_15900 PF00375 Sodium:dicarboxylate symporter family HQ395_15905 PF00271 Helicase conserved C-terminal domain HQ395_15905 PF00270 DEAD/DEAH box helicase HQ395_15905 PF00570 HRDC domain HQ395_15905 PF16124 RecQ zinc-binding HQ395_15905 PF09382 RQC domain HQ395_15910 PF06798 PrkA serine protein kinase C-terminal domain HQ395_15910 PF08298 PrkA AAA domain HQ395_15915 PF04285 Protein of unknown function (DUF444) HQ395_15920 PF04293 SpoVR like protein HQ395_15925 PF00392 Bacterial regulatory proteins, gntR family HQ395_15925 PF07840 FadR C-terminal domain HQ395_15930 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HQ395_15935 PF02600 Disulfide bond formation protein DsbB HQ395_15940 PF09335 SNARE associated Golgi protein HQ395_15950 PF04851 Type III restriction enzyme, res subunit HQ395_15950 PF17757 UvrB interaction domain HQ395_15950 PF00271 Helicase conserved C-terminal domain HQ395_15950 PF12344 Ultra-violet resistance protein B HQ395_15950 PF02151 UvrB/uvrC motif HQ395_15960 PF06826 Predicted Permease Membrane Region HQ395_15960 PF02080 TrkA-C domain HQ395_15965 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_15965 PF01464 Transglycosylase SLT domain HQ395_15985 PF00072 Response regulator receiver domain HQ395_15985 PF08279 HTH domain HQ395_15985 PF12431 Transcriptional regulator HQ395_15990 PF00989 PAS fold HQ395_15990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_15990 PF17203 Single cache domain 3 HQ395_15990 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HQ395_15995 PF00480 ROK family HQ395_15995 PF01047 MarR family HQ395_16000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_16000 PF17200 Single Cache domain 2 HQ395_16000 PF00672 HAMP domain HQ395_16005 PF02810 SEC-C motif HQ395_16015 PF00890 FAD binding domain HQ395_16020 PF13183 4Fe-4S dicluster domain HQ395_16020 PF02754 Cysteine-rich domain HQ395_16030 PF13808 DDE_Tnp_1-associated HQ395_16030 PF01609 Transposase DDE domain HQ395_16040 PF13435 Cytochrome c554 and c-prime HQ395_16040 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ395_16045 PF00037 4Fe-4S binding domain HQ395_16045 PF13247 4Fe-4S dicluster domain HQ395_16050 PF03916 Polysulphide reductase, NrfD HQ395_16055 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ395_16055 PF01578 Cytochrome C assembly protein HQ395_16060 PF08534 Redoxin HQ395_16065 PF03918 Cytochrome C biogenesis protein HQ395_16070 PF00293 NUDIX domain HQ395_16075 PF00768 D-alanyl-D-alanine carboxypeptidase HQ395_16080 PF01212 Beta-eliminating lyase HQ395_16090 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HQ395_16095 PF01266 FAD dependent oxidoreductase HQ395_16105 PF07969 Amidohydrolase family HQ395_16120 PF00571 CBS domain HQ395_16120 PF00478 IMP dehydrogenase / GMP reductase domain HQ395_16130 PF08267 Cobalamin-independent synthase, N-terminal domain HQ395_16130 PF01717 Cobalamin-independent synthase, Catalytic domain HQ395_16135 PF03466 LysR substrate binding domain HQ395_16135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_16140 PF03466 LysR substrate binding domain HQ395_16145 PF00857 Isochorismatase family HQ395_16150 PF02678 Pirin HQ395_16150 PF05726 Pirin C-terminal cupin domain HQ395_16165 PF07715 TonB-dependent Receptor Plug Domain HQ395_16165 PF00593 TonB dependent receptor HQ395_16170 PF12833 Helix-turn-helix domain HQ395_16175 PF00106 short chain dehydrogenase HQ395_16180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_16180 PF03466 LysR substrate binding domain HQ395_16185 PF13460 NAD(P)H-binding HQ395_16195 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ395_16200 PF00675 Insulinase (Peptidase family M16) HQ395_16200 PF05193 Peptidase M16 inactive domain HQ395_16205 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ395_16205 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ395_16210 PF00893 Small Multidrug Resistance protein HQ395_16215 PF18381 YcaO cyclodehydratase C-terminal domain HQ395_16215 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HQ395_16220 PF01226 Formate/nitrite transporter HQ395_16225 PF01228 Glycine radical HQ395_16225 PF02901 Pyruvate formate lyase-like HQ395_16235 PF00202 Aminotransferase class-III HQ395_16240 PF00266 Aminotransferase class-V HQ395_16245 PF00392 Bacterial regulatory proteins, gntR family HQ395_16245 PF07702 UTRA domain HQ395_16255 PF00005 ABC transporter HQ395_16260 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_16265 PF01266 FAD dependent oxidoreductase HQ395_16270 PF03692 Putative zinc- or iron-chelating domain HQ395_16280 PF02629 CoA binding domain HQ395_16280 PF00549 CoA-ligase HQ395_16285 PF00549 CoA-ligase HQ395_16285 PF08442 ATP-grasp domain HQ395_16290 PF02817 e3 binding domain HQ395_16290 PF00364 Biotin-requiring enzyme HQ395_16290 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ395_16295 PF02779 Transketolase, pyrimidine binding domain HQ395_16295 PF16078 2-oxoglutarate dehydrogenase N-terminus HQ395_16295 PF00676 Dehydrogenase E1 component HQ395_16295 PF16870 2-oxoglutarate dehydrogenase C-terminal HQ395_16300 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ395_16305 PF00890 FAD binding domain HQ395_16305 PF02910 Fumarate reductase flavoprotein C-term HQ395_16310 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ395_16315 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ395_16320 PF00285 Citrate synthase, C-terminal domain HQ395_16335 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ395_16335 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ395_16340 PF01266 FAD dependent oxidoreductase HQ395_16340 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HQ395_16350 PF03606 C4-dicarboxylate anaerobic carrier HQ395_16365 PF01863 Protein of unknown function DUF45 HQ395_16380 PF01197 Ribosomal protein L31 HQ395_16385 PF00444 Ribosomal protein L36 HQ395_16390 PF02678 Pirin HQ395_16390 PF05726 Pirin C-terminal cupin domain HQ395_16395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_16395 PF03466 LysR substrate binding domain HQ395_16400 PF12833 Helix-turn-helix domain HQ395_16400 PF02311 AraC-like ligand binding domain HQ395_16405 PF02653 Branched-chain amino acid transport system / permease component HQ395_16410 PF00005 ABC transporter HQ395_16415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ395_16420 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ395_16425 PF00596 Class II Aldolase and Adducin N-terminal domain HQ395_16430 PF11762 L-arabinose isomerase C-terminal domain HQ395_16430 PF02610 L-arabinose isomerase HQ395_16475 PF00816 H-NS histone family HQ395_16520 PF00561 alpha/beta hydrolase fold HQ395_16550 PF01609 Transposase DDE domain HQ395_16550 PF05598 Transposase domain (DUF772) HQ395_16565 PF00772 DnaB-like helicase N terminal domain HQ395_16565 PF03796 DnaB-like helicase C terminal domain HQ395_16605 PF01695 IstB-like ATP binding protein HQ395_16610 PF00665 Integrase core domain HQ395_16645 PF14659 Phage integrase, N-terminal SAM-like domain HQ395_16645 PF13356 Arm DNA-binding domain HQ395_16645 PF00589 Phage integrase family HQ395_16650 PF00929 Exonuclease HQ395_16650 PF08411 Exonuclease C-terminal HQ395_16665 PF03788 LrgA family HQ395_16670 PF04172 LrgB-like family HQ395_16675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ395_16675 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HQ395_16680 PF00501 AMP-binding enzyme HQ395_16685 PF08891 YfcL protein HQ395_16695 PF03741 Integral membrane protein TerC family HQ395_16700 PF00691 OmpA family HQ395_16705 PF17152 Periplasmic sensor domain HQ395_16705 PF00990 Diguanylate cyclase, GGDEF domain HQ395_16710 PF13689 YfiR/HmsC-like HQ395_16715 PF18024 Helix-turn-helix domain HQ395_16715 PF00158 Sigma-54 interaction domain HQ395_16725 PF01329 Pterin 4 alpha carbinolamine dehydratase HQ395_16730 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HQ395_16735 PF05128 Domain of unknown function (DUF697) HQ395_16740 PF04317 YcjX-like family, DUF463 HQ395_16750 PF06667 Phage shock protein B HQ395_16755 PF04012 PspA/IM30 family HQ395_16760 PF02954 Bacterial regulatory protein, Fis family HQ395_16760 PF00158 Sigma-54 interaction domain HQ395_16765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ395_16770 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_16775 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_16775 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ395_16780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ395_16780 PF00005 ABC transporter HQ395_16785 PF00005 ABC transporter HQ395_16790 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HQ395_16795 PF00156 Phosphoribosyl transferase domain HQ395_16800 PF02674 Colicin V production protein HQ395_16805 PF02403 Seryl-tRNA synthetase N-terminal domain HQ395_16805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ395_16810 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_16810 PF16193 AAA C-terminal domain HQ395_16810 PF12002 MgsA AAA+ ATPase C terminal HQ395_16815 PF03548 Outer membrane lipoprotein carrier protein LolA HQ395_16820 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HQ395_16820 PF17854 FtsK alpha domain HQ395_16820 PF09397 Ftsk gamma domain HQ395_16820 PF01580 FtsK/SpoIIIE family HQ395_16825 PF01037 Lrp/AsnC ligand binding domain HQ395_16830 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ395_16830 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ395_16835 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_16840 PF17158 Membrane-associated sensor, integral membrane domain HQ395_16840 PF00990 Diguanylate cyclase, GGDEF domain HQ395_16845 PF05433 Glycine zipper 2TM domain HQ395_16850 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HQ395_16855 PF04377 Arginine-tRNA-protein transferase, C terminus HQ395_16855 PF04376 Arginine-tRNA-protein transferase, N terminus HQ395_16860 PF01176 Translation initiation factor 1A / IF-1 HQ395_16865 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_16865 PF07724 AAA domain (Cdc48 subfamily) HQ395_16865 PF17871 AAA lid domain HQ395_16865 PF10431 C-terminal, D2-small domain, of ClpB protein HQ395_16865 PF02861 Clp amino terminal domain, pathogenicity island component HQ395_16870 PF02617 ATP-dependent Clp protease adaptor protein ClpS HQ395_16875 PF00313 'Cold-shock' DNA-binding domain HQ395_16880 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HQ395_16880 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HQ395_16910 PF08241 Methyltransferase domain HQ395_16920 PF16353 Domain of unknown function(DUF4981) HQ395_16920 PF02929 Beta galactosidase small chain HQ395_16920 PF00703 Glycosyl hydrolases family 2 HQ395_16920 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ395_16920 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ395_16925 PF01306 LacY proton/sugar symporter HQ395_16930 PF13808 DDE_Tnp_1-associated HQ395_16930 PF01609 Transposase DDE domain HQ395_16935 PF01306 LacY proton/sugar symporter HQ395_16940 PF05598 Transposase domain (DUF772) HQ395_16940 PF01609 Transposase DDE domain HQ395_16950 PF01548 Transposase HQ395_16950 PF02371 Transposase IS116/IS110/IS902 family HQ395_16960 PF01609 Transposase DDE domain HQ395_16960 PF13808 DDE_Tnp_1-associated HQ395_16965 PF05598 Transposase domain (DUF772) HQ395_16965 PF01609 Transposase DDE domain HQ395_16970 PF00356 Bacterial regulatory proteins, lacI family HQ395_16975 PF16363 GDP-mannose 4,6 dehydratase HQ395_16980 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ395_16980 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ395_16985 PF00288 GHMP kinases N terminal domain HQ395_16985 PF08544 GHMP kinases C terminal HQ395_16985 PF10509 Galactokinase galactose-binding signature HQ395_16990 PF00224 Pyruvate kinase, barrel domain HQ395_16990 PF02887 Pyruvate kinase, alpha/beta domain HQ395_17030 PF13180 PDZ domain HQ395_17035 PF01435 Peptidase family M48 HQ395_17045 PF03707 Bacterial signalling protein N terminal repeat HQ395_17045 PF00990 Diguanylate cyclase, GGDEF domain HQ395_17045 PF00563 EAL domain HQ395_17050 PF00085 Thioredoxin HQ395_17055 PF01434 Peptidase family M41 HQ395_17055 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_17055 PF17862 AAA+ lid domain HQ395_17065 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_17065 PF07724 AAA domain (Cdc48 subfamily) HQ395_17065 PF17871 AAA lid domain HQ395_17065 PF02861 Clp amino terminal domain, pathogenicity island component HQ395_17065 PF10431 C-terminal, D2-small domain, of ClpB protein HQ395_17070 PF00011 Hsp20/alpha crystallin family HQ395_17075 PF12728 Helix-turn-helix domain HQ395_17135 PF00665 Integrase core domain HQ395_17140 PF01695 IstB-like ATP binding protein HQ395_17220 PF13657 HipA N-terminal domain HQ395_17220 PF07804 HipA-like C-terminal domain HQ395_17255 PF14331 ImcF-related N-terminal domain HQ395_17255 PF06744 Type VI secretion protein IcmF C-terminal HQ395_17255 PF06761 Intracellular multiplication and human macrophage-killing HQ395_17270 PF02954 Bacterial regulatory protein, Fis family HQ395_17270 PF00158 Sigma-54 interaction domain HQ395_17275 PF17871 AAA lid domain HQ395_17275 PF10431 C-terminal, D2-small domain, of ClpB protein HQ395_17275 PF07724 AAA domain (Cdc48 subfamily) HQ395_17275 PF00004 ATPase family associated with various cellular activities (AAA) HQ395_17285 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE HQ395_17305 PF05947 Type VI secretion system, TssF HQ395_17315 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath HQ395_17340 PF05638 Type VI secretion system effector, Hcp HQ395_17350 PF01609 Transposase DDE domain HQ395_17350 PF13808 DDE_Tnp_1-associated HQ395_17385 PF00665 Integrase core domain HQ395_17390 PF01695 IstB-like ATP binding protein HQ395_17430 PF04717 Type VI secretion system, phage-baseplate injector HQ395_17450 PF10722 Putative bacterial sensory transduction regulator HQ395_17460 PF00265 Thymidine kinase HQ395_17465 PF03553 Na+/H+ antiporter family HQ395_17470 PF00816 H-NS histone family HQ395_17475 PF01923 Cobalamin adenosyltransferase HQ395_17480 PF12843 Putative quorum-sensing-regulated virulence factor HQ395_17485 PF04055 Radical SAM superfamily HQ395_17490 PF06508 Queuosine biosynthesis protein QueC HQ395_17505 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ395_17510 PF18073 Rubredoxin metal binding domain HQ395_17520 PF00216 Bacterial DNA-binding protein HQ395_17525 PF00575 S1 RNA binding domain HQ395_17530 PF02224 Cytidylate kinase HQ395_17535 PF00925 GTP cyclohydrolase II HQ395_17540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_17540 PF03466 LysR substrate binding domain HQ395_17545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_17545 PF03466 LysR substrate binding domain HQ395_17565 PF00881 Nitroreductase family HQ395_17570 PF00990 Diguanylate cyclase, GGDEF domain HQ395_17570 PF13188 PAS domain HQ395_17570 PF03707 Bacterial signalling protein N terminal repeat HQ395_17570 PF00563 EAL domain HQ395_17580 PF03466 LysR substrate binding domain HQ395_17580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_17585 PF00072 Response regulator receiver domain HQ395_17595 PF01212 Beta-eliminating lyase HQ395_17610 PF00248 Aldo/keto reductase family HQ395_17615 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HQ395_17625 PF03411 Penicillin-insensitive murein endopeptidase HQ395_17635 PF04536 TPM domain HQ395_17650 PF01618 MotA/TolQ/ExbB proton channel family HQ395_17655 PF00691 OmpA family HQ395_17655 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ395_17660 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HQ395_17665 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ395_17670 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ395_17670 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ395_17680 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ395_17680 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ395_17685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ395_17685 PF00384 Molybdopterin oxidoreductase HQ395_17685 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ395_17690 PF00146 NADH dehydrogenase HQ395_17695 PF12838 4Fe-4S dicluster domain HQ395_17700 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HQ395_17705 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HQ395_17710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HQ395_17710 PF00361 Proton-conducting membrane transporter HQ395_17715 PF00361 Proton-conducting membrane transporter HQ395_17720 PF00361 Proton-conducting membrane transporter HQ395_17730 PF00072 Response regulator receiver domain HQ395_17735 PF01966 HD domain HQ395_17740 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HQ395_17740 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HQ395_17740 PF02769 AIR synthase related protein, C-terminal domain HQ395_17745 PF01464 Transglycosylase SLT domain HQ395_17745 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_17750 PF07191 zinc-ribbons HQ395_17755 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HQ395_17755 PF01926 50S ribosome-binding GTPase HQ395_17760 PF13360 PQQ-like domain HQ395_17765 PF09976 Tetratricopeptide repeat-like domain HQ395_17770 PF03129 Anticodon binding domain HQ395_17770 PF13393 Histidyl-tRNA synthetase HQ395_17775 PF04551 GcpE protein HQ395_17790 PF04055 Radical SAM superfamily HQ395_17795 PF00334 Nucleoside diphosphate kinase HQ395_17800 PF12404 Peptidase HQ395_17800 PF00883 Cytosol aminopeptidase family, catalytic domain HQ395_17805 PF12404 Peptidase HQ395_17805 PF00883 Cytosol aminopeptidase family, catalytic domain HQ395_17810 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ395_17815 PF00012 Hsp70 protein HQ395_17820 PF07743 HSCB C-terminal oligomerisation domain HQ395_17825 PF01521 Iron-sulphur cluster biosynthesis HQ395_17830 PF01592 NifU-like N terminal domain HQ395_17835 PF00266 Aminotransferase class-V HQ395_17840 PF02082 Transcriptional regulator HQ395_17845 PF00588 SpoU rRNA Methylase family HQ395_17855 PF02036 SCP-2 sterol transfer family HQ395_17860 PF01136 Peptidase family U32 HQ395_17865 PF01136 Peptidase family U32 HQ395_17870 PF13181 Tetratricopeptide repeat HQ395_17870 PF07719 Tetratricopeptide repeat HQ395_17880 PF02355 Protein export membrane protein HQ395_17880 PF07549 SecD/SecF GG Motif HQ395_17885 PF07549 SecD/SecF GG Motif HQ395_17885 PF13721 SecD export protein N-terminal TM region HQ395_17885 PF02355 Protein export membrane protein HQ395_17890 PF02699 Preprotein translocase subunit HQ395_17895 PF01702 Queuine tRNA-ribosyltransferase HQ395_17900 PF02547 Queuosine biosynthesis protein HQ395_17905 PF00571 CBS domain HQ395_17910 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ395_17910 PF00578 AhpC/TSA family HQ395_17915 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_17915 PF13192 Thioredoxin domain HQ395_17920 PF07690 Major Facilitator Superfamily HQ395_17930 PF08241 Methyltransferase domain HQ395_17935 PF03960 ArsC family HQ395_17940 PF01758 Sodium Bile acid symporter family HQ395_17945 PF01022 Bacterial regulatory protein, arsR family HQ395_17950 PF02347 Glycine cleavage system P-protein HQ395_17955 PF01597 Glycine cleavage H-protein HQ395_17960 PF08669 Glycine cleavage T-protein C-terminal barrel domain HQ395_17960 PF01571 Aminomethyltransferase folate-binding domain HQ395_17970 PF01494 FAD binding domain HQ395_17975 PF03695 Uncharacterised protein family (UPF0149) HQ395_17980 PF05164 Cell division protein ZapA HQ395_17990 PF07690 Major Facilitator Superfamily HQ395_17995 PF00043 Glutathione S-transferase, C-terminal domain HQ395_17995 PF02798 Glutathione S-transferase, N-terminal domain HQ395_18005 PF00459 Inositol monophosphatase family HQ395_18010 PF12729 Four helix bundle sensory module for signal transduction HQ395_18010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_18010 PF00672 HAMP domain HQ395_18015 PF02535 ZIP Zinc transporter HQ395_18025 PF01048 Phosphorylase superfamily HQ395_18035 PF01497 Periplasmic binding protein HQ395_18040 PF02719 Polysaccharide biosynthesis protein HQ395_18045 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ395_18060 PF00202 Aminotransferase class-III HQ395_18070 PF08666 SAF domain HQ395_18070 PF03102 NeuB family HQ395_18075 PF16254 Domain of unknown function (DUF4910) HQ395_18075 PF16221 winged helix-turn-helix HQ395_18075 PF09940 Domain of unknown function (DUF2172) HQ395_18110 PF02561 Flagellar protein FliS HQ395_18115 PF07196 Flagellin hook IN motif HQ395_18115 PF02465 Flagellar hook-associated protein 2 N-terminus HQ395_18115 PF07195 Flagellar hook-associated protein 2 C-terminus HQ395_18125 PF00700 Bacterial flagellin C-terminal helical region HQ395_18125 PF00669 Bacterial flagellin N-terminal helical region HQ395_18130 PF00700 Bacterial flagellin C-terminal helical region HQ395_18130 PF07196 Flagellin hook IN motif HQ395_18130 PF00669 Bacterial flagellin N-terminal helical region HQ395_18135 PF03458 UPF0126 domain HQ395_18145 PF02568 Thiamine biosynthesis protein (ThiI) HQ395_18145 PF02926 THUMP domain HQ395_18155 PF00912 Transglycosylase HQ395_18155 PF06832 Penicillin-Binding Protein C-terminus Family HQ395_18155 PF00905 Penicillin binding protein transpeptidase domain HQ395_18160 PF07703 Alpha-2-macroglobulin bait region domain HQ395_18160 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain HQ395_18160 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HQ395_18160 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HQ395_18160 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HQ395_18160 PF17962 Bacterial macroglobulin domain 6 HQ395_18160 PF01835 MG2 domain HQ395_18160 PF07678 A-macroglobulin TED domain HQ395_18160 PF00207 Alpha-2-macroglobulin family HQ395_18165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ395_18165 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_18170 PF00990 Diguanylate cyclase, GGDEF domain HQ395_18170 PF00563 EAL domain HQ395_18170 PF03707 Bacterial signalling protein N terminal repeat HQ395_18175 PF04055 Radical SAM superfamily HQ395_18185 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_18190 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_18195 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_18200 PF00005 ABC transporter HQ395_18205 PF03956 Lysine exporter LysO HQ395_18210 PF01979 Amidohydrolase family HQ395_18215 PF04336 Acyl carrier protein phosphodiesterase HQ395_18230 PF03960 ArsC family HQ395_18235 PF00578 AhpC/TSA family HQ395_18240 PF01435 Peptidase family M48 HQ395_18240 PF13181 Tetratricopeptide repeat HQ395_18245 PF01206 Sulfurtransferase TusA HQ395_18250 PF01594 AI-2E family transporter HQ395_18260 PF00561 alpha/beta hydrolase fold HQ395_18265 PF03976 Polyphosphate kinase 2 (PPK2) HQ395_18270 PF00005 ABC transporter HQ395_18270 PF08402 TOBE domain HQ395_18275 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_18280 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_18280 PF14785 Maltose transport system permease protein MalF P2 domain HQ395_18285 PF01547 Bacterial extracellular solute-binding protein HQ395_18290 PF04245 37-kD nucleoid-associated bacterial protein HQ395_18295 PF07208 Protein of unknown function (DUF1414) HQ395_18300 PF11893 Domain of unknown function (DUF3413) HQ395_18300 PF00884 Sulfatase HQ395_18305 PF00593 TonB dependent receptor HQ395_18305 PF07715 TonB-dependent Receptor Plug Domain HQ395_18310 PF00326 Prolyl oligopeptidase family HQ395_18310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ395_18330 PF03974 Ecotin HQ395_18335 PF04219 Protein of unknown function, DUF HQ395_18340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_18340 PF03466 LysR substrate binding domain HQ395_18345 PF02153 Prephenate dehydrogenase HQ395_18345 PF01817 Chorismate mutase type II HQ395_18350 PF00793 DAHP synthetase I family HQ395_18355 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ395_18360 PF01266 FAD dependent oxidoreductase HQ395_18360 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HQ395_18370 PF08220 DeoR-like helix-turn-helix domain HQ395_18370 PF00455 DeoR C terminal sensor domain HQ395_18375 PF07690 Major Facilitator Superfamily HQ395_18380 PF00230 Major intrinsic protein HQ395_18385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HQ395_18385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ395_18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_18390 PF03466 LysR substrate binding domain HQ395_18410 PF00248 Aldo/keto reductase family HQ395_18415 PF07690 Major Facilitator Superfamily HQ395_18425 PF02322 Cytochrome bd terminal oxidase subunit II HQ395_18430 PF01654 Cytochrome bd terminal oxidase subunit I HQ395_18435 PF00155 Aminotransferase class I and II HQ395_18435 PF00392 Bacterial regulatory proteins, gntR family HQ395_18450 PF04391 Protein of unknown function (DUF533) HQ395_18465 PF10689 Protein of unknown function (DUF2496) HQ395_18475 PF07690 Major Facilitator Superfamily HQ395_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_18480 PF03466 LysR substrate binding domain HQ395_18490 PF07690 Major Facilitator Superfamily HQ395_18495 PF00849 RNA pseudouridylate synthase HQ395_18495 PF01479 S4 domain HQ395_18500 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HQ395_18500 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HQ395_18510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ395_18520 PF04851 Type III restriction enzyme, res subunit HQ395_18520 PF00271 Helicase conserved C-terminal domain HQ395_18525 PF00300 Histidine phosphatase superfamily (branch 1) HQ395_18535 PF03313 Serine dehydratase alpha chain HQ395_18540 PF01042 Endoribonuclease L-PSP HQ395_18550 PF00672 HAMP domain HQ395_18550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_18565 PF17810 Arginine decarboxylase helical bundle domain HQ395_18565 PF17944 Arginine decarboxylase C-terminal helical extension HQ395_18565 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ395_18575 PF01546 Peptidase family M20/M25/M40 HQ395_18575 PF07687 Peptidase dimerisation domain HQ395_18600 PF04264 YceI-like domain HQ395_18605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_18605 PF03466 LysR substrate binding domain HQ395_18615 PF01268 Formate--tetrahydrofolate ligase HQ395_18620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_18620 PF00672 HAMP domain HQ395_18620 PF17200 Single Cache domain 2 HQ395_18625 PF01227 GTP cyclohydrolase I HQ395_18630 PF03453 MoeA N-terminal region (domain I and II) HQ395_18630 PF03454 MoeA C-terminal region (domain IV) HQ395_18630 PF00994 Probable molybdopterin binding domain HQ395_18635 PF00899 ThiF family HQ395_18640 PF06291 Bor protein HQ395_18645 PF06291 Bor protein HQ395_18655 PF06406 StbA protein HQ395_18660 PF00561 alpha/beta hydrolase fold HQ395_18665 PF00005 ABC transporter HQ395_18665 PF03459 TOBE domain HQ395_18670 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_18680 PF02391 MoaE protein HQ395_18685 PF02597 ThiS family HQ395_18690 PF01967 MoaC family HQ395_18695 PF00994 Probable molybdopterin binding domain HQ395_18700 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ395_18705 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HQ395_18710 PF12801 4Fe-4S binding domain HQ395_18710 PF13237 4Fe-4S dicluster domain HQ395_18715 PF12800 4Fe-4S binding domain HQ395_18715 PF12838 4Fe-4S dicluster domain HQ395_18720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ395_18720 PF00384 Molybdopterin oxidoreductase HQ395_18720 PF01568 Molydopterin dinucleotide binding domain HQ395_18720 PF10518 TAT (twin-arginine translocation) pathway signal sequence HQ395_18730 PF00037 4Fe-4S binding domain HQ395_18730 PF12800 4Fe-4S binding domain HQ395_18730 PF13187 4Fe-4S dicluster domain HQ395_18735 PF06463 Molybdenum Cofactor Synthesis C HQ395_18735 PF04055 Radical SAM superfamily HQ395_18740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_18740 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HQ395_18740 PF00672 HAMP domain HQ395_18740 PF07730 Histidine kinase HQ395_18745 PF00196 Bacterial regulatory proteins, luxR family HQ395_18745 PF00072 Response regulator receiver domain HQ395_18755 PF00072 Response regulator receiver domain HQ395_18755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_18755 PF00672 HAMP domain HQ395_18755 PF01627 Hpt domain HQ395_18755 PF00512 His Kinase A (phospho-acceptor) domain HQ395_18755 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ395_18765 PF01933 Uncharacterised protein family UPF0052 HQ395_18775 PF13230 Glutamine amidotransferases class-II HQ395_18780 PF13580 SIS domain HQ395_18785 PF09317 Domain of unknown function (DUF1974) HQ395_18785 PF02770 Acyl-CoA dehydrogenase, middle domain HQ395_18785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ395_18785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ395_18790 PF11849 Domain of unknown function (DUF3369) HQ395_18800 PF00929 Exonuclease HQ395_18805 PF00075 RNase H HQ395_18810 PF08241 Methyltransferase domain HQ395_18815 PF00753 Metallo-beta-lactamase superfamily HQ395_18815 PF16123 Hydroxyacylglutathione hydrolase C-terminus HQ395_18825 PF03372 Endonuclease/Exonuclease/phosphatase family HQ395_18835 PF03061 Thioesterase superfamily HQ395_18845 PF00356 Bacterial regulatory proteins, lacI family HQ395_18850 PF14718 Soluble lytic murein transglycosylase L domain HQ395_18850 PF01464 Transglycosylase SLT domain HQ395_18860 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ395_18880 PF04357 TamB, inner membrane protein subunit of TAM complex HQ395_18885 PF01103 Surface antigen HQ395_18885 PF07244 Surface antigen variable number repeat HQ395_18885 PF17243 POTRA domain TamA domain 1 HQ395_18895 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ395_18900 PF01625 Peptide methionine sulfoxide reductase HQ395_18910 PF02627 Carboxymuconolactone decarboxylase family HQ395_18915 PF00403 Heavy-metal-associated domain HQ395_18915 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_18915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ395_18920 PF13416 Bacterial extracellular solute-binding protein HQ395_18930 PF00005 ABC transporter HQ395_18935 PF01066 CDP-alcohol phosphatidyltransferase HQ395_18940 PF13406 Transglycosylase SLT domain HQ395_18945 PF01047 MarR family HQ395_18955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ395_18955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ395_18955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ395_18955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ395_18960 PF03925 SeqA protein C-terminal domain HQ395_18960 PF17206 SeqA protein N-terminal domain HQ395_18965 PF12697 Alpha/beta hydrolase family HQ395_18975 PF01402 Ribbon-helix-helix protein, copG family HQ395_18980 PF00258 Flavodoxin HQ395_18990 PF01475 Ferric uptake regulator family HQ395_18995 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HQ395_18995 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ395_19000 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HQ395_19000 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ395_19000 PF02838 Glycosyl hydrolase family 20, domain 2 HQ395_19000 PF03173 Putative carbohydrate binding domain HQ395_19005 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ395_19005 PF00367 phosphotransferase system, EIIB HQ395_19005 PF02378 Phosphotransferase system, EIIC HQ395_19010 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HQ395_19015 PF01979 Amidohydrolase family HQ395_19020 PF00480 ROK family HQ395_19020 PF01047 MarR family HQ395_19025 PF00884 Sulfatase HQ395_19025 PF08019 Phosphoethanolamine transferase EptA/EptB HQ395_19030 PF01709 Transcriptional regulator HQ395_19035 PF02938 GAD domain HQ395_19035 PF00152 tRNA synthetases class II (D, K and N) HQ395_19035 PF01336 OB-fold nucleic acid binding domain HQ395_19040 PF01904 Protein of unknown function DUF72 HQ395_19045 PF13649 Methyltransferase domain HQ395_19050 PF08003 Protein of unknown function (DUF1698) HQ395_19070 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ395_19070 PF00578 AhpC/TSA family HQ395_19075 PF03466 LysR substrate binding domain HQ395_19075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_19080 PF12563 Hemolytic toxin N terminal HQ395_19080 PF07968 Leukocidin/Hemolysin toxin family HQ395_19085 PF00877 NlpC/P60 family HQ395_19095 PF00171 Aldehyde dehydrogenase family HQ395_19100 PF08359 YsiA-like protein, C-terminal region HQ395_19100 PF00440 Bacterial regulatory proteins, tetR family HQ395_19110 PF00465 Iron-containing alcohol dehydrogenase HQ395_19120 PF00291 Pyridoxal-phosphate dependent enzyme HQ395_19140 PF01554 MatE HQ395_19155 PF02311 AraC-like ligand binding domain HQ395_19155 PF12833 Helix-turn-helix domain HQ395_19160 PF01804 Penicillin amidase HQ395_19165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ395_19165 PF10371 Domain of unknown function HQ395_19165 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ395_19165 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ395_19165 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ395_19170 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ395_19170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ395_19170 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ395_19175 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ395_19175 PF03473 MOSC domain HQ395_19175 PF03476 MOSC N-terminal beta barrel domain HQ395_19175 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ395_19175 PF03473 MOSC domain HQ395_19175 PF03476 MOSC N-terminal beta barrel domain HQ395_19180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_19180 PF13426 PAS domain HQ395_19180 PF08447 PAS fold HQ395_19185 PF01435 Peptidase family M48 HQ395_19195 PF12697 Alpha/beta hydrolase family HQ395_19195 PF08241 Methyltransferase domain HQ395_19200 PF00155 Aminotransferase class I and II HQ395_19205 PF06968 Biotin and Thiamin Synthesis associated domain HQ395_19205 PF04055 Radical SAM superfamily HQ395_19210 PF00202 Aminotransferase class-III HQ395_19225 PF01336 OB-fold nucleic acid binding domain HQ395_19225 PF00152 tRNA synthetases class II (D, K and N) HQ395_19230 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ395_19240 PF07687 Peptidase dimerisation domain HQ395_19240 PF01546 Peptidase family M20/M25/M40 HQ395_19255 PF03466 LysR substrate binding domain HQ395_19255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_19260 PF03960 ArsC family HQ395_19265 PF01546 Peptidase family M20/M25/M40 HQ395_19265 PF07687 Peptidase dimerisation domain HQ395_19270 PF02557 D-alanyl-D-alanine carboxypeptidase HQ395_19280 PF03471 Transporter associated domain HQ395_19280 PF02080 TrkA-C domain HQ395_19280 PF00999 Sodium/hydrogen exchanger family HQ395_19290 PF03471 Transporter associated domain HQ395_19290 PF02080 TrkA-C domain HQ395_19290 PF00999 Sodium/hydrogen exchanger family HQ395_19300 PF01810 LysE type translocator HQ395_19305 PF00672 HAMP domain HQ395_19305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_19310 PF07509 Protein of unknown function (DUF1523) HQ395_19325 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ395_19330 PF00849 RNA pseudouridylate synthase HQ395_19335 PF01048 Phosphorylase superfamily HQ395_19340 PF00465 Iron-containing alcohol dehydrogenase HQ395_19345 PF04355 SmpA / OmlA family HQ395_19350 PF13460 NAD(P)H-binding HQ395_19355 PF03658 RnfH family Ubiquitin HQ395_19360 PF03364 Polyketide cyclase / dehydrase and lipid transport HQ395_19365 PF01668 SmpB protein HQ395_19375 PF00589 Phage integrase family HQ395_19375 PF13356 Arm DNA-binding domain HQ395_19385 PF01609 Transposase DDE domain HQ395_19395 PF01609 Transposase DDE domain HQ395_19400 PF00107 Zinc-binding dehydrogenase HQ395_19400 PF08240 Alcohol dehydrogenase GroES-like domain HQ395_19450 PF02798 Glutathione S-transferase, N-terminal domain HQ395_19450 PF00043 Glutathione S-transferase, C-terminal domain HQ395_19455 PF01625 Peptide methionine sulfoxide reductase HQ395_19460 PF01641 SelR domain HQ395_19510 PF09588 YqaJ-like viral recombinase domain HQ395_19565 PF04002 RadC-like JAB domain HQ395_19615 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A HQ395_19620 PF04471 Restriction endonuclease HQ395_19620 PF14338 Mrr N-terminal domain HQ395_19630 PF18766 SWI2/SNF2 ATPase HQ395_19630 PF11867 Domain of unknown function (DUF3387) HQ395_19630 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HQ395_19660 PF06250 YhcG PDDEXK nuclease domain HQ395_19660 PF17761 DUF1016 N-terminal domain HQ395_19665 PF02384 N-6 DNA Methylase HQ395_19665 PF12161 HsdM N-terminal domain HQ395_19680 PF00717 Peptidase S24-like HQ395_19685 PF13438 Domain of unknown function (DUF4113) HQ395_19685 PF00817 impB/mucB/samB family HQ395_19685 PF11799 impB/mucB/samB family C-terminal domain HQ395_19685 PF11798 IMS family HHH motif HQ395_19755 PF10124 Mu-like prophage major head subunit gpT HQ395_19760 PF10123 Mu-like prophage I protein HQ395_19780 PF06074 Protein of unknown function (DUF935) HQ395_19785 PF03237 Terminase-like family HQ395_19790 PF11985 Protein of unknown function (DUF3486) HQ395_19800 PF08461 Ribonuclease R winged-helix domain HQ395_19920 PF02384 N-6 DNA Methylase HQ395_19925 PF01420 Type I restriction modification DNA specificity domain HQ395_19930 PF04320 Protein with unknown function (DUF469) HQ395_19940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_19940 PF03466 LysR substrate binding domain HQ395_19945 PF02447 GntP family permease HQ395_19950 PF00291 Pyridoxal-phosphate dependent enzyme HQ395_19960 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ395_19965 PF12833 Helix-turn-helix domain HQ395_19970 PF01238 Phosphomannose isomerase type I HQ395_20000 PF00155 Aminotransferase class I and II HQ395_20005 PF00367 phosphotransferase system, EIIB HQ395_20005 PF02378 Phosphotransferase system, EIIC HQ395_20010 PF00356 Bacterial regulatory proteins, lacI family HQ395_20010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ395_20025 PF00583 Acetyltransferase (GNAT) family HQ395_20040 PF02378 Phosphotransferase system, EIIC HQ395_20040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ395_20040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ395_20045 PF09013 YopH, N-terminal HQ395_20055 PF07690 Major Facilitator Superfamily HQ395_20060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ395_20070 PF00849 RNA pseudouridylate synthase HQ395_20075 PF00293 NUDIX domain HQ395_20085 PF04356 Protein of unknown function (DUF489) HQ395_20090 PF08328 Adenylosuccinate lyase C-terminal HQ395_20090 PF00206 Lyase HQ395_20095 PF08007 Cupin superfamily protein HQ395_20100 PF13508 Acetyltransferase (GNAT) domain HQ395_20110 PF02798 Glutathione S-transferase, N-terminal domain HQ395_20115 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HQ395_20115 PF01243 Pyridoxamine 5'-phosphate oxidase HQ395_20130 PF01189 16S rRNA methyltransferase RsmB/F HQ395_20130 PF01029 NusB family HQ395_20135 PF00462 Glutaredoxin HQ395_20140 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ395_20140 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ395_20145 PF04333 MlaA lipoprotein HQ395_20150 PF03918 Cytochrome C biogenesis protein HQ395_20155 PF03918 Cytochrome C biogenesis protein HQ395_20160 PF08534 Redoxin HQ395_20165 PF01578 Cytochrome C assembly protein HQ395_20165 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ395_20170 PF03100 CcmE HQ395_20175 PF04995 Heme exporter protein D (CcmD) HQ395_20180 PF01578 Cytochrome C assembly protein HQ395_20185 PF03379 CcmB protein HQ395_20190 PF00005 ABC transporter HQ395_20200 PF01584 CheW-like domain HQ395_20210 PF13614 AAA domain HQ395_20215 PF00691 OmpA family HQ395_20215 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ395_20220 PF01618 MotA/TolQ/ExbB proton channel family HQ395_20225 PF01339 CheB methylesterase HQ395_20225 PF00072 Response regulator receiver domain HQ395_20230 PF01584 CheW-like domain HQ395_20230 PF02895 Signal transducing histidine kinase, homodimeric domain HQ395_20230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_20230 PF01627 Hpt domain HQ395_20230 PF00072 Response regulator receiver domain HQ395_20235 PF04344 Chemotaxis phosphatase, CheZ HQ395_20240 PF00072 Response regulator receiver domain HQ395_20245 PF04542 Sigma-70 region 2 HQ395_20245 PF04539 Sigma-70 region 3 HQ395_20245 PF04545 Sigma-70, region 4 HQ395_20250 PF10609 NUBPL iron-transfer P-loop NTPase HQ395_20260 PF00771 FHIPEP family HQ395_20265 PF01312 FlhB HrpN YscU SpaS Family HQ395_20270 PF01311 Bacterial export proteins, family 1 HQ395_20275 PF01313 Bacterial export proteins, family 3 HQ395_20280 PF00813 FliP family HQ395_20285 PF04347 Flagellar biosynthesis protein, FliO HQ395_20290 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ395_20295 PF02154 Flagellar motor switch protein FliM HQ395_20295 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ395_20315 PF18269 T3SS EscN ATPase C-terminal domain HQ395_20315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ395_20325 PF01706 FliG C-terminal domain HQ395_20325 PF14841 FliG middle domain HQ395_20325 PF14842 FliG N-terminal domain HQ395_20330 PF08345 Flagellar M-ring protein C-terminal HQ395_20330 PF01514 Secretory protein of YscJ/FliF family HQ395_20335 PF02049 Flagellar hook-basal body complex protein FliE HQ395_20345 PF00072 Response regulator receiver domain HQ395_20350 PF18693 TRAM domain HQ395_20350 PF00919 Uncharacterized protein family UPF0004 HQ395_20350 PF04055 Radical SAM superfamily HQ395_20355 PF00486 Transcriptional regulatory protein, C terminal HQ395_20355 PF00072 Response regulator receiver domain HQ395_20360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_20365 PF02685 Glucokinase HQ395_20370 PF01418 Helix-turn-helix domain, rpiR family HQ395_20370 PF01380 SIS domain HQ395_20375 PF00224 Pyruvate kinase, barrel domain HQ395_20375 PF02887 Pyruvate kinase, alpha/beta domain HQ395_20385 PF00873 AcrB/AcrD/AcrF family HQ395_20390 PF09317 Domain of unknown function (DUF1974) HQ395_20390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ395_20390 PF02770 Acyl-CoA dehydrogenase, middle domain HQ395_20390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ395_20395 PF00440 Bacterial regulatory proteins, tetR family HQ395_20470 PF00384 Molybdopterin oxidoreductase HQ395_20475 PF02634 FdhD/NarQ family HQ395_20480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_20480 PF03466 LysR substrate binding domain HQ395_20490 PF17969 L,D-transpeptidase C-terminal domain HQ395_20490 PF01476 LysM domain HQ395_20490 PF03734 L,D-transpeptidase catalytic domain HQ395_20500 PF01575 MaoC like domain HQ395_20505 PF05971 RNA methyltransferase HQ395_20510 PF00877 NlpC/P60 family HQ395_20515 PF01648 4'-phosphopantetheinyl transferase superfamily HQ395_20520 PF00085 Thioredoxin HQ395_20530 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ395_20535 PF01842 ACT domain HQ395_20535 PF00551 Formyl transferase HQ395_20545 PF13091 PLD-like domain HQ395_20545 PF13396 Phospholipase_D-nuclease N-terminal HQ395_20560 PF01551 Peptidase family M23 HQ395_20565 PF00128 Alpha amylase, catalytic domain HQ395_20570 PF01551 Peptidase family M23 HQ395_20570 PF10145 Phage-related minor tail protein HQ395_20570 PF01464 Transglycosylase SLT domain HQ395_20575 PF00230 Major intrinsic protein HQ395_20580 PF02075 Crossover junction endodeoxyribonuclease RuvC HQ395_20590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ395_20610 PF05656 Protein of unknown function (DUF805) HQ395_20615 PF12833 Helix-turn-helix domain HQ395_20635 PF11842 Domain of unknown function (DUF3362) HQ395_20635 PF04055 Radical SAM superfamily HQ395_20635 PF08497 Radical SAM N-terminal HQ395_20645 PF00873 AcrB/AcrD/AcrF family HQ395_20650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_20650 PF00529 HlyD membrane-fusion protein of T1SS HQ395_20655 PF00990 Diguanylate cyclase, GGDEF domain HQ395_20660 PF01734 Patatin-like phospholipase HQ395_20665 PF00209 Sodium:neurotransmitter symporter family HQ395_20680 PF01389 OmpA-like transmembrane domain HQ395_20680 PF00691 OmpA family HQ395_20685 PF00691 OmpA family HQ395_20685 PF01389 OmpA-like transmembrane domain HQ395_20690 PF00691 OmpA family HQ395_20690 PF01389 OmpA-like transmembrane domain HQ395_20695 PF00390 Malic enzyme, N-terminal domain HQ395_20695 PF03949 Malic enzyme, NAD binding domain HQ395_20700 PF12833 Helix-turn-helix domain HQ395_20705 PF01554 MatE HQ395_20710 PF10692 Protein of unknown function (DUF2498) HQ395_20720 PF00860 Permease family HQ395_20730 PF01235 Sodium:alanine symporter family HQ395_20735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ395_20735 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ395_20745 PF08534 Redoxin HQ395_20755 PF00293 NUDIX domain HQ395_20775 PF00005 ABC transporter HQ395_20780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ395_20780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ395_20800 PF03932 CutC family HQ395_20805 PF00480 ROK family HQ395_20815 PF01435 Peptidase family M48 HQ395_20820 PF12849 PBP superfamily domain HQ395_20825 PF00512 His Kinase A (phospho-acceptor) domain HQ395_20825 PF00989 PAS fold HQ395_20825 PF11808 Phosphate regulon sensor protein PhoR HQ395_20825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_20830 PF00486 Transcriptional regulatory protein, C terminal HQ395_20830 PF00072 Response regulator receiver domain HQ395_20835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ395_20840 PF02515 CoA-transferase family III HQ395_20845 PF02770 Acyl-CoA dehydrogenase, middle domain HQ395_20845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ395_20845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ395_20850 PF02954 Bacterial regulatory protein, Fis family HQ395_20850 PF00158 Sigma-54 interaction domain HQ395_20850 PF01590 GAF domain HQ395_20855 PF00171 Aldehyde dehydrogenase family HQ395_20865 PF00892 EamA-like transporter family HQ395_20870 PF12431 Transcriptional regulator HQ395_20870 PF00072 Response regulator receiver domain HQ395_20875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_20875 PF00989 PAS fold HQ395_20875 PF17203 Single cache domain 3 HQ395_20875 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HQ395_20880 PF00390 Malic enzyme, N-terminal domain HQ395_20880 PF03949 Malic enzyme, NAD binding domain HQ395_20885 PF03390 2-hydroxycarboxylate transporter family HQ395_20890 PF13808 DDE_Tnp_1-associated HQ395_20890 PF01609 Transposase DDE domain HQ395_20900 PF01047 MarR family HQ395_20905 PF00529 HlyD membrane-fusion protein of T1SS HQ395_20905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_20930 PF01679 Proteolipid membrane potential modulator HQ395_20940 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ395_20940 PF03477 ATP cone domain HQ395_20950 PF00533 BRCA1 C Terminus (BRCT) domain HQ395_20950 PF01653 NAD-dependent DNA ligase adenylation domain HQ395_20950 PF03120 NAD-dependent DNA ligase OB-fold domain HQ395_20950 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HQ395_20950 PF12826 Helix-hairpin-helix motif HQ395_20955 PF04354 ZipA, C-terminal FtsZ-binding domain HQ395_20970 PF03458 UPF0126 domain HQ395_20980 PF05951 Bacterial protein of unknown function (DUF882) HQ395_20985 PF03734 L,D-transpeptidase catalytic domain HQ395_20985 PF01471 Putative peptidoglycan binding domain HQ395_21000 PF00535 Glycosyl transferase family 2 HQ395_21020 PF00128 Alpha amylase, catalytic domain HQ395_21030 PF00196 Bacterial regulatory proteins, luxR family HQ395_21030 PF00072 Response regulator receiver domain HQ395_21055 PF00999 Sodium/hydrogen exchanger family HQ395_21055 PF02080 TrkA-C domain HQ395_21055 PF02254 TrkA-N domain HQ395_21060 PF00990 Diguanylate cyclase, GGDEF domain HQ395_21065 PF01171 PP-loop family HQ395_21065 PF09179 TilS substrate binding domain HQ395_21065 PF11734 TilS substrate C-terminal domain HQ395_21070 PF05649 Peptidase family M13 HQ395_21070 PF01431 Peptidase family M13 HQ395_21080 PF16326 ABC transporter C-terminal domain HQ395_21080 PF00005 ABC transporter HQ395_21080 PF12848 ABC transporter HQ395_21085 PF13302 Acetyltransferase (GNAT) domain HQ395_21090 PF13520 Amino acid permease HQ395_21095 PF03466 LysR substrate binding domain HQ395_21095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_21100 PF12706 Beta-lactamase superfamily domain HQ395_21110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_21110 PF03466 LysR substrate binding domain HQ395_21120 PF08543 Phosphomethylpyrimidine kinase HQ395_21125 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HQ395_21125 PF01276 Orn/Lys/Arg decarboxylase, major domain HQ395_21125 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HQ395_21130 PF13520 Amino acid permease HQ395_21135 PF18500 CadC C-terminal domain 1 HQ395_21135 PF00486 Transcriptional regulatory protein, C terminal HQ395_21140 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HQ395_21145 PF02811 PHP domain HQ395_21145 PF01336 OB-fold nucleic acid binding domain HQ395_21145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ395_21145 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ395_21145 PF14579 Helix-hairpin-helix motif HQ395_21150 PF01351 Ribonuclease HII HQ395_21155 PF02684 Lipid-A-disaccharide synthetase HQ395_21160 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HQ395_21160 PF00132 Bacterial transferase hexapeptide (six repeats) HQ395_21165 PF07977 FabA-like domain HQ395_21170 PF00132 Bacterial transferase hexapeptide (six repeats) HQ395_21170 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HQ395_21175 PF03938 Outer membrane protein (OmpH-like) HQ395_21180 PF07244 Surface antigen variable number repeat HQ395_21180 PF01103 Surface antigen HQ395_21185 PF17820 PDZ domain HQ395_21185 PF02163 Peptidase family M50 HQ395_21190 PF13288 DXP reductoisomerase C-terminal domain HQ395_21190 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HQ395_21190 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HQ395_21200 PF01255 Putative undecaprenyl diphosphate synthase HQ395_21205 PF01765 Ribosome recycling factor HQ395_21210 PF00696 Amino acid kinase family HQ395_21215 PF00889 Elongation factor TS HQ395_21220 PF00318 Ribosomal protein S2 HQ395_21225 PF00557 Metallopeptidase family M24 HQ395_21230 PF01966 HD domain HQ395_21230 PF01909 Nucleotidyltransferase domain HQ395_21230 PF01842 ACT domain HQ395_21230 PF08335 GlnD PII-uridylyltransferase HQ395_21235 PF00132 Bacterial transferase hexapeptide (six repeats) HQ395_21235 PF14602 Hexapeptide repeat of succinyl-transferase HQ395_21235 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HQ395_21240 PF11944 Protein of unknown function (DUF3461) HQ395_21245 PF00367 phosphotransferase system, EIIB HQ395_21245 PF02378 Phosphotransferase system, EIIC HQ395_21250 PF07148 Maltose operon periplasmic protein precursor (MalM) HQ395_21255 PF02264 LamB porin HQ395_21260 PF00258 Flavodoxin HQ395_21265 PF00849 RNA pseudouridylate synthase HQ395_21270 PF04287 tRNA pseudouridine synthase C HQ395_21295 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ395_21300 PF07348 Syd protein (SUKH-2) HQ395_21305 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HQ395_21305 PF14489 QueF-like protein HQ395_21315 PF00990 Diguanylate cyclase, GGDEF domain HQ395_21320 PF03641 Possible lysine decarboxylase HQ395_21320 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HQ395_21320 PF11892 Domain of unknown function (DUF3412) HQ395_21325 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ395_21325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ395_21330 PF18324 Hypothetical protein TT1725 HQ395_21330 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ395_21340 PF01728 FtsJ-like methyltransferase HQ395_21340 PF18125 RlmM ferredoxin-like domain HQ395_21345 PF04241 Protein of unknown function (DUF423) HQ395_21355 PF03466 LysR substrate binding domain HQ395_21355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_21360 PF00672 HAMP domain HQ395_21360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_21365 PF11798 IMS family HHH motif HQ395_21365 PF00817 impB/mucB/samB family HQ395_21365 PF11799 impB/mucB/samB family C-terminal domain HQ395_21380 PF02424 ApbE family HQ395_21385 PF00970 Oxidoreductase FAD-binding domain HQ395_21385 PF00175 Oxidoreductase NAD-binding domain HQ395_21385 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ395_21390 PF02508 Rnf-Nqr subunit, membrane protein HQ395_21395 PF02508 Rnf-Nqr subunit, membrane protein HQ395_21400 PF04205 FMN-binding domain HQ395_21405 PF03116 NQR2, RnfD, RnfE family HQ395_21410 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HQ395_21410 PF11973 NQRA C-terminal domain HQ395_21415 PF01722 BolA-like protein HQ395_21420 PF05175 Methyltransferase small domain HQ395_21430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ395_21440 PF07690 Major Facilitator Superfamily HQ395_21445 PF03502 Nucleoside-specific channel-forming protein, Tsx HQ395_21450 PF04461 Protein of unknown function (DUF520) HQ395_21455 PF08546 Ketopantoate reductase PanE/ApbA C terminal HQ395_21455 PF02558 Ketopantoate reductase PanE/ApbA HQ395_21460 PF01965 DJ-1/PfpI family HQ395_21465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ395_21465 PF00205 Thiamine pyrophosphate enzyme, central domain HQ395_21465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ395_21470 PF03306 Alpha-acetolactate decarboxylase HQ395_21475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_21475 PF03466 LysR substrate binding domain HQ395_21510 PF13503 Domain of unknown function (DUF4123) HQ395_21515 PF04717 Type VI secretion system, phage-baseplate injector HQ395_21520 PF05638 Type VI secretion system effector, Hcp HQ395_21525 PF00196 Bacterial regulatory proteins, luxR family HQ395_21525 PF03472 Autoinducer binding domain HQ395_21535 PF13462 Thioredoxin HQ395_21535 PF06965 Na+/H+ antiporter 1 HQ395_21540 PF16363 GDP-mannose 4,6 dehydratase HQ395_21545 PF00042 Globin HQ395_21545 PF00175 Oxidoreductase NAD-binding domain HQ395_21545 PF00970 Oxidoreductase FAD-binding domain HQ395_21550 PF03063 Prismane/CO dehydrogenase family HQ395_21555 PF00210 Ferritin-like domain HQ395_21595 PF00106 short chain dehydrogenase HQ395_21605 PF00875 DNA photolyase HQ395_21605 PF03441 FAD binding domain of DNA photolyase HQ395_21610 PF13411 MerR HTH family regulatory protein HQ395_21615 PF08349 Protein of unknown function (DUF1722) HQ395_21645 PF00800 Prephenate dehydratase HQ395_21645 PF01817 Chorismate mutase type II HQ395_21680 PF00672 HAMP domain HQ395_21680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_21680 PF02743 Cache domain HQ395_21685 PF03573 outer membrane porin, OprD family HQ395_21690 PF00106 short chain dehydrogenase HQ395_21715 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HQ395_21725 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ395_21725 PF12833 Helix-turn-helix domain HQ395_21725 PF02805 Metal binding domain of Ada HQ395_21725 PF06029 AlkA N-terminal domain HQ395_21730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ395_21730 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ395_21745 PF12392 Collagenase HQ395_21745 PF01136 Peptidase family U32 HQ395_21750 PF01810 LysE type translocator HQ395_21755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_21755 PF03466 LysR substrate binding domain HQ395_21760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ395_21760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ395_21765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_21765 PF02743 Cache domain HQ395_21765 PF00672 HAMP domain HQ395_21770 PF00072 Response regulator receiver domain HQ395_21780 PF01584 CheW-like domain HQ395_21780 PF09078 CheY binding HQ395_21780 PF01627 Hpt domain HQ395_21780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_21780 PF02895 Signal transducing histidine kinase, homodimeric domain HQ395_21785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_21785 PF00672 HAMP domain HQ395_21785 PF12729 Four helix bundle sensory module for signal transduction HQ395_21790 PF01584 CheW-like domain HQ395_21795 PF02203 Tar ligand binding domain homologue HQ395_21795 PF00672 HAMP domain HQ395_21795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_21800 PF01739 CheR methyltransferase, SAM binding domain HQ395_21800 PF03705 CheR methyltransferase, all-alpha domain HQ395_21805 PF03975 CheD chemotactic sensory transduction HQ395_21810 PF01339 CheB methylesterase HQ395_21810 PF00072 Response regulator receiver domain HQ395_21815 PF00266 Aminotransferase class-V HQ395_21840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_21840 PF00512 His Kinase A (phospho-acceptor) domain HQ395_21840 PF01627 Hpt domain HQ395_21840 PF00989 PAS fold HQ395_21840 PF00072 Response regulator receiver domain HQ395_21840 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_21845 PF00196 Bacterial regulatory proteins, luxR family HQ395_21845 PF00072 Response regulator receiver domain HQ395_21855 PF15976 CS1-pili formation C-terminal HQ395_21855 PF16967 E-set like domain HQ395_21870 PF00563 EAL domain HQ395_21870 PF00990 Diguanylate cyclase, GGDEF domain HQ395_21870 PF01590 GAF domain HQ395_21870 PF00989 PAS fold HQ395_21875 PF16325 Peptidase family U32 C-terminal domain HQ395_21875 PF01136 Peptidase family U32 HQ395_21880 PF12838 4Fe-4S dicluster domain HQ395_21885 PF01168 Alanine racemase, N-terminal domain HQ395_21885 PF00842 Alanine racemase, C-terminal domain HQ395_21890 PF00772 DnaB-like helicase N terminal domain HQ395_21890 PF03796 DnaB-like helicase C terminal domain HQ395_21900 PF12792 CSS motif domain associated with EAL HQ395_21900 PF00563 EAL domain HQ395_21905 PF02872 5'-nucleotidase, C-terminal domain HQ395_21905 PF00149 Calcineurin-like phosphoesterase HQ395_21925 PF02954 Bacterial regulatory protein, Fis family HQ395_21925 PF00072 Response regulator receiver domain HQ395_21925 PF00158 Sigma-54 interaction domain HQ395_21930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ395_21930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ395_21940 PF04102 SlyX HQ395_21945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ395_21950 PF09526 Probable metal-binding protein (DUF2387) HQ395_21960 PF01584 CheW-like domain HQ395_21960 PF00072 Response regulator receiver domain HQ395_21965 PF00561 alpha/beta hydrolase fold HQ395_21970 PF00563 EAL domain HQ395_21970 PF01590 GAF domain HQ395_21970 PF00990 Diguanylate cyclase, GGDEF domain HQ395_21970 PF00360 Phytochrome region HQ395_21975 PF06794 Uncharacterised protein family (UPF0270) HQ395_21980 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ395_21980 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ395_21980 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ395_21985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ395_21990 PF00535 Glycosyl transferase family 2 HQ395_21995 PF02911 Formyl transferase, C-terminal domain HQ395_21995 PF00551 Formyl transferase HQ395_21995 PF01370 NAD dependent epimerase/dehydratase family HQ395_22000 PF01522 Polysaccharide deacetylase HQ395_22005 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HQ395_22010 PF00892 EamA-like transporter family HQ395_22015 PF00893 Small Multidrug Resistance protein HQ395_22020 PF00485 Phosphoribulokinase / Uridine kinase family HQ395_22035 PF02566 OsmC-like protein HQ395_22040 PF00027 Cyclic nucleotide-binding domain HQ395_22040 PF13545 Crp-like helix-turn-helix domain HQ395_22045 PF13847 Methyltransferase domain HQ395_22050 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ395_22050 PF18416 N-acetylglucosamine binding protein domain 2 HQ395_22055 PF17945 Beta/Gamma crystallin HQ395_22055 PF12561 ToxR activated gene A lipoprotein domain HQ395_22060 PF08329 Chitinase A, N-terminal domain HQ395_22060 PF00704 Glycosyl hydrolases family 18 HQ395_22065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_22065 PF00989 PAS fold HQ395_22065 PF00512 His Kinase A (phospho-acceptor) domain HQ395_22075 PF13443 Cro/C1-type HTH DNA-binding domain HQ395_22080 PF12832 MFS_1 like family HQ395_22085 PF00593 TonB dependent receptor HQ395_22085 PF07715 TonB-dependent Receptor Plug Domain HQ395_22105 PF01243 Pyridoxamine 5'-phosphate oxidase HQ395_22110 PF06228 Haem utilisation ChuX/HutX HQ395_22120 PF01032 FecCD transport family HQ395_22125 PF00005 ABC transporter HQ395_22135 PF01370 NAD dependent epimerase/dehydratase family HQ395_22145 PF01791 DeoC/LacD family aldolase HQ395_22150 PF01773 Na+ dependent nucleoside transporter N-terminus HQ395_22150 PF07662 Na+ dependent nucleoside transporter C-terminus HQ395_22150 PF07670 Nucleoside recognition HQ395_22155 PF01048 Phosphorylase superfamily HQ395_22160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_22160 PF03466 LysR substrate binding domain HQ395_22175 PF01464 Transglycosylase SLT domain HQ395_22180 PF01048 Phosphorylase superfamily HQ395_22200 PF00005 ABC transporter HQ395_22200 PF12848 ABC transporter HQ395_22210 PF00860 Permease family HQ395_22215 PF00226 DnaJ domain HQ395_22215 PF05099 Tellurite resistance protein TerB HQ395_22220 PF00483 Nucleotidyl transferase HQ395_22225 PF01636 Phosphotransferase enzyme family HQ395_22230 PF04453 LPS transport system D HQ395_22230 PF03968 OstA-like protein HQ395_22235 PF00639 PPIC-type PPIASE domain HQ395_22235 PF09312 SurA N-terminal domain HQ395_22240 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HQ395_22245 PF00398 Ribosomal RNA adenine dimethylase HQ395_22250 PF04379 ApaG domain HQ395_22255 PF00149 Calcineurin-like phosphoesterase HQ395_22265 PF01609 Transposase DDE domain HQ395_22265 PF13808 DDE_Tnp_1-associated HQ395_22275 PF00296 Luciferase-like monooxygenase HQ395_22295 PF13193 AMP-binding enzyme C-terminal domain HQ395_22295 PF00501 AMP-binding enzyme HQ395_22300 PF07670 Nucleoside recognition HQ395_22305 PF01018 GTP1/OBG HQ395_22305 PF01926 50S ribosome-binding GTPase HQ395_22310 PF01016 Ribosomal L27 protein HQ395_22315 PF00829 Ribosomal prokaryotic L21 protein HQ395_22320 PF00348 Polyprenyl synthetase HQ395_22325 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HQ395_22330 PF01145 SPFH domain / Band 7 family HQ395_22335 PF12221 Bacterial membrane protein N terminal HQ395_22335 PF01145 SPFH domain / Band 7 family HQ395_22340 PF16360 GTP-binding GTPase Middle Region HQ395_22340 PF13167 GTP-binding GTPase N-terminal HQ395_22340 PF01926 50S ribosome-binding GTPase HQ395_22345 PF17209 Hfq protein HQ395_22355 PF08676 MutL C terminal dimerisation domain HQ395_22355 PF01119 DNA mismatch repair protein, C-terminal domain HQ395_22360 PF01520 N-acetylmuramoyl-L-alanine amidase HQ395_22365 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HQ395_22370 PF01256 Carbohydrate kinase HQ395_22370 PF03853 YjeF-related protein N-terminus HQ395_22375 PF08331 Domain of unknown function (DUF1730) HQ395_22380 PF00480 ROK family HQ395_22390 PF00005 ABC transporter HQ395_22390 PF09383 NIL domain HQ395_22395 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_22400 PF03180 NLPA lipoprotein HQ395_22405 PF02357 Transcription termination factor nusG HQ395_22410 PF00672 HAMP domain HQ395_22410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_22410 PF12729 Four helix bundle sensory module for signal transduction HQ395_22415 PF03707 Bacterial signalling protein N terminal repeat HQ395_22415 PF00563 EAL domain HQ395_22415 PF00990 Diguanylate cyclase, GGDEF domain HQ395_22420 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ395_22420 PF00512 His Kinase A (phospho-acceptor) domain HQ395_22420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_22420 PF00072 Response regulator receiver domain HQ395_22430 PF01966 HD domain HQ395_22430 PF13286 Phosphohydrolase-associated domain HQ395_22455 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HQ395_22460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_22460 PF03466 LysR substrate binding domain HQ395_22470 PF01259 SAICAR synthetase HQ395_22475 PF06804 NlpB/DapX lipoprotein HQ395_22480 PF00701 Dihydrodipicolinate synthetase family HQ395_22485 PF01842 ACT domain HQ395_22490 PF00578 AhpC/TSA family HQ395_22495 PF03887 YfbU domain HQ395_22500 PF04217 Protein of unknown function, DUF412 HQ395_22505 PF00871 Acetokinase family HQ395_22510 PF07085 DRTGG domain HQ395_22510 PF01515 Phosphate acetyl/butaryl transferase HQ395_22515 PF10369 Small subunit of acetolactate synthase HQ395_22520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ395_22520 PF00205 Thiamine pyrophosphate enzyme, central domain HQ395_22520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ395_22530 PF03033 Glycosyltransferase family 28 N-terminal domain HQ395_22530 PF04101 Glycosyltransferase family 28 C-terminal domain HQ395_22535 PF01569 PAP2 superfamily HQ395_22545 PF00682 HMGL-like HQ395_22545 PF08502 LeuA allosteric (dimerisation) domain HQ395_22550 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ395_22555 PF00330 Aconitase family (aconitate hydratase) HQ395_22560 PF00694 Aconitase C-terminal domain HQ395_22580 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_22585 PF00005 ABC transporter HQ395_22590 PF13638 PIN domain HQ395_22590 PF02562 PhoH-like protein HQ395_22600 PF02867 Ribonucleotide reductase, barrel domain HQ395_22600 PF00317 Ribonucleotide reductase, all-alpha domain HQ395_22600 PF08343 Ribonucleotide reductase N-terminal HQ395_22630 PF18339 RapA N-terminal Tudor like domain 1 HQ395_22630 PF18337 RapA N-terminal Tudor like domain HQ395_22630 PF12137 RNA polymerase recycling family C-terminal HQ395_22630 PF00271 Helicase conserved C-terminal domain HQ395_22630 PF00176 SNF2 family N-terminal domain HQ395_22635 PF00849 RNA pseudouridylate synthase HQ395_22645 PF00563 EAL domain HQ395_22645 PF00990 Diguanylate cyclase, GGDEF domain HQ395_22645 PF03707 Bacterial signalling protein N terminal repeat HQ395_22645 PF13188 PAS domain HQ395_22655 PF00118 TCP-1/cpn60 chaperonin family HQ395_22660 PF00166 Chaperonin 10 Kd subunit HQ395_22670 PF04186 FxsA cytoplasmic membrane protein HQ395_22675 PF10415 Fumarase C C-terminus HQ395_22675 PF00206 Lyase HQ395_22680 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ395_22685 PF00267 Gram-negative porin HQ395_22690 PF07690 Major Facilitator Superfamily HQ395_22695 PF03466 LysR substrate binding domain HQ395_22695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_22700 PF04151 Bacterial pre-peptidase C-terminal domain HQ395_22700 PF02868 Thermolysin metallopeptidase, alpha-helical domain HQ395_22700 PF01447 Thermolysin metallopeptidase, catalytic domain HQ395_22700 PF03413 Peptidase propeptide and YPEB domain HQ395_22700 PF07504 Fungalysin/Thermolysin Propeptide Motif HQ395_22705 PF13302 Acetyltransferase (GNAT) domain HQ395_22720 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ395_22720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ395_22725 PF07690 Major Facilitator Superfamily HQ395_22730 PF01725 Ham1 family HQ395_22735 PF04055 Radical SAM superfamily HQ395_22735 PF06969 HemN C-terminal domain HQ395_22740 PF03889 Alternative ribosome-rescue factor A HQ395_22745 PF01872 RibD C-terminal domain HQ395_22750 PF13411 MerR HTH family regulatory protein HQ395_22755 PF01808 AICARFT/IMPCHase bienzyme HQ395_22755 PF02142 MGS-like domain HQ395_22760 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HQ395_22760 PF02843 Phosphoribosylglycinamide synthetase, C domain HQ395_22760 PF02844 Phosphoribosylglycinamide synthetase, N domain HQ395_22775 PF00128 Alpha amylase, catalytic domain HQ395_22785 PF04545 Sigma-70, region 4 HQ395_22785 PF04539 Sigma-70 region 3 HQ395_22785 PF00140 Sigma-70 factor, region 1.2 HQ395_22785 PF03979 Sigma-70 factor, region 1.1 HQ395_22785 PF04542 Sigma-70 region 2 HQ395_22785 PF04546 Sigma-70, non-essential region HQ395_22790 PF10410 DnaB-helicase binding domain of primase HQ395_22790 PF08278 DNA primase DnaG DnaB-binding HQ395_22790 PF08275 DNA primase catalytic core, N-terminal domain HQ395_22790 PF01807 CHC2 zinc finger HQ395_22795 PF09424 Yqey-like protein HQ395_22800 PF01165 Ribosomal protein S21 HQ395_22805 PF00814 Glycoprotease family HQ395_22810 PF04542 Sigma-70 region 2 HQ395_22810 PF04539 Sigma-70 region 3 HQ395_22810 PF04545 Sigma-70, region 4 HQ395_22810 PF00140 Sigma-70 factor, region 1.2 HQ395_22815 PF01476 LysM domain HQ395_22815 PF01551 Peptidase family M23 HQ395_22820 PF09335 SNARE associated Golgi protein HQ395_22830 PF01975 Survival protein SurE HQ395_22835 PF01142 tRNA pseudouridine synthase D (TruD) HQ395_22840 PF02542 YgbB family HQ395_22845 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HQ395_22850 PF04977 Septum formation initiator HQ395_22855 PF00113 Enolase, C-terminal TIM barrel domain HQ395_22855 PF03952 Enolase, N-terminal domain HQ395_22860 PF00117 Glutamine amidotransferase class-I HQ395_22860 PF06418 CTP synthase N-terminus HQ395_22865 PF03819 MazG nucleotide pyrophosphohydrolase domain HQ395_22870 PF02824 TGS domain HQ395_22870 PF04607 Region found in RelA / SpoT proteins HQ395_22870 PF13291 ACT domain HQ395_22875 PF01938 TRAM domain HQ395_22875 PF05958 tRNA (Uracil-5-)-methyltransferase HQ395_22880 PF00672 HAMP domain HQ395_22880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ395_22880 PF00512 His Kinase A (phospho-acceptor) domain HQ395_22880 PF01627 Hpt domain HQ395_22880 PF00072 Response regulator receiver domain HQ395_22880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ395_22885 PF07308 Protein of unknown function (DUF1456) HQ395_22890 PF01510 N-acetylmuramoyl-L-alanine amidase HQ395_22895 PF00455 DeoR C terminal sensor domain HQ395_22895 PF08220 DeoR-like helix-turn-helix domain HQ395_22900 PF08013 Tagatose 6 phosphate kinase HQ395_22905 PF01380 SIS domain HQ395_22910 PF03830 PTS system sorbose subfamily IIB component HQ395_22915 PF03609 PTS system sorbose-specific iic component HQ395_22920 PF03613 PTS system mannose/fructose/sorbose family IID component HQ395_22925 PF03610 PTS system fructose IIA component HQ395_22930 PF01979 Amidohydrolase family HQ395_22935 PF01116 Fructose-bisphosphate aldolase class-II HQ395_22945 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HQ395_22950 PF11967 Recombination protein O N terminal HQ395_22950 PF02565 Recombination protein O C terminal HQ395_22955 PF07650 KH domain HQ395_22955 PF01926 50S ribosome-binding GTPase HQ395_22960 PF00035 Double-stranded RNA binding motif HQ395_22960 PF14622 Ribonuclease-III-like HQ395_22965 PF10502 Signal peptidase, peptidase S26 HQ395_22970 PF06421 GTP-binding protein LepA C-terminus HQ395_22970 PF00679 Elongation factor G C-terminus HQ395_22970 PF00009 Elongation factor Tu GTP binding domain HQ395_22970 PF03144 Elongation factor Tu domain 2 HQ395_22980 PF03888 MucB/RseB N-terminal domain HQ395_22980 PF17188 MucB/RseB C-terminal domain HQ395_22985 PF03873 Anti sigma-E protein RseA, C-terminal domain HQ395_22985 PF03872 Anti sigma-E protein RseA, N-terminal domain HQ395_22990 PF04542 Sigma-70 region 2 HQ395_22990 PF08281 Sigma-70, region 4 HQ395_22995 PF00890 FAD binding domain HQ395_22995 PF02910 Fumarate reductase flavoprotein C-term HQ395_23005 PF03937 Flavinator of succinate dehydrogenase HQ395_23010 PF01571 Aminomethyltransferase folate-binding domain HQ395_23015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_23015 PF03466 LysR substrate binding domain HQ395_23030 PF03091 CutA1 divalent ion tolerance protein HQ395_23035 PF02683 Cytochrome C biogenesis protein transmembrane region HQ395_23035 PF11412 Disulphide bond corrector protein DsbC HQ395_23050 PF01266 FAD dependent oxidoreductase HQ395_23055 PF01116 Fructose-bisphosphate aldolase class-II HQ395_23060 PF00162 Phosphoglycerate kinase HQ395_23065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ395_23065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ395_23070 PF00480 ROK family HQ395_23075 PF01208 Uroporphyrinogen decarboxylase (URO-D) HQ395_23080 PF09297 NADH pyrophosphatase zinc ribbon domain HQ395_23080 PF00293 NUDIX domain HQ395_23085 PF01619 Proline dehydrogenase HQ395_23085 PF00171 Aldehyde dehydrogenase family HQ395_23085 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HQ395_23085 PF14850 DNA-binding domain of Proline dehydrogenase HQ395_23090 PF08239 Bacterial SH3 domain HQ395_23095 PF00027 Cyclic nucleotide-binding domain HQ395_23095 PF00520 Ion transport protein HQ395_23100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_23100 PF00672 HAMP domain HQ395_23100 PF02743 Cache domain HQ395_23110 PF08335 GlnD PII-uridylyltransferase HQ395_23110 PF03710 Glutamate-ammonia ligase adenylyltransferase HQ395_23125 PF05170 AsmA family HQ395_23130 PF00326 Prolyl oligopeptidase family HQ395_23130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ395_23135 PF00291 Pyridoxal-phosphate dependent enzyme HQ395_23140 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_23145 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_23150 PF00005 ABC transporter HQ395_23155 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_23160 PF00005 ABC transporter HQ395_23160 PF02687 FtsX-like permease family HQ395_23160 PF12704 MacB-like periplasmic core domain HQ395_23165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ395_23170 PF00072 Response regulator receiver domain HQ395_23170 PF00486 Transcriptional regulatory protein, C terminal HQ395_23180 PF00293 NUDIX domain HQ395_23180 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HQ395_23180 PF09297 NADH pyrophosphatase zinc ribbon domain HQ395_23210 PF03060 Nitronate monooxygenase HQ395_23220 PF00445 Ribonuclease T2 family HQ395_23235 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HQ395_23250 PF03466 LysR substrate binding domain HQ395_23250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_23255 PF00990 Diguanylate cyclase, GGDEF domain HQ395_23260 PF00271 Helicase conserved C-terminal domain HQ395_23260 PF00270 DEAD/DEAH box helicase HQ395_23270 PF00753 Metallo-beta-lactamase superfamily HQ395_23290 PF01425 Amidase HQ395_23295 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ395_23300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_23300 PF03466 LysR substrate binding domain HQ395_23310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ395_23315 PF00583 Acetyltransferase (GNAT) family HQ395_23330 PF00583 Acetyltransferase (GNAT) family HQ395_23340 PF16658 Class II release factor RF3, C-terminal domain HQ395_23340 PF03144 Elongation factor Tu domain 2 HQ395_23340 PF00009 Elongation factor Tu GTP binding domain HQ395_23345 PF00072 Response regulator receiver domain HQ395_23345 PF00990 Diguanylate cyclase, GGDEF domain HQ395_23355 PF05762 VWA domain containing CoxE-like protein HQ395_23360 PF07728 AAA domain (dynein-related subfamily) HQ395_23360 PF17868 AAA lid domain HQ395_23360 PF12592 Protein of unknown function (DUF3763) HQ395_23370 PF00583 Acetyltransferase (GNAT) family HQ395_23380 PF00501 AMP-binding enzyme HQ395_23390 PF04262 Glutamate-cysteine ligase HQ395_23395 PF05193 Peptidase M16 inactive domain HQ395_23395 PF00675 Insulinase (Peptidase family M16) HQ395_23400 PF09335 SNARE associated Golgi protein HQ395_23405 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ395_23405 PF16197 Ketoacyl-synthetase C-terminal extension HQ395_23405 PF08990 Erythronolide synthase docking HQ395_23405 PF08240 Alcohol dehydrogenase GroES-like domain HQ395_23405 PF00698 Acyl transferase domain HQ395_23405 PF08659 KR domain HQ395_23405 PF00550 Phosphopantetheine attachment site HQ395_23405 PF14765 Polyketide synthase dehydratase HQ395_23405 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ395_23425 PF00970 Oxidoreductase FAD-binding domain HQ395_23425 PF00175 Oxidoreductase NAD-binding domain HQ395_23430 PF01281 Ribosomal protein L9, N-terminal domain HQ395_23430 PF03948 Ribosomal protein L9, C-terminal domain HQ395_23435 PF01084 Ribosomal protein S18 HQ395_23440 PF01250 Ribosomal protein S6 HQ395_23445 PF01566 Natural resistance-associated macrophage protein HQ395_23465 PF13673 Acetyltransferase (GNAT) domain HQ395_23475 PF00588 SpoU rRNA Methylase family HQ395_23475 PF08032 RNA 2'-O ribose methyltransferase substrate binding HQ395_23505 PF01609 Transposase DDE domain HQ395_23505 PF13808 DDE_Tnp_1-associated HQ395_23510 PF17876 Cold shock domain HQ395_23510 PF08461 Ribonuclease R winged-helix domain HQ395_23510 PF08206 Ribonuclease B OB domain HQ395_23510 PF00773 RNB domain HQ395_23510 PF00575 S1 RNA binding domain HQ395_23515 PF00990 Diguanylate cyclase, GGDEF domain HQ395_23520 PF02664 S-Ribosylhomocysteinase (LuxS) HQ395_23530 PF00543 Nitrogen regulatory protein P-II HQ395_23535 PF00795 Carbon-nitrogen hydrolase HQ395_23535 PF02540 NAD synthase HQ395_23570 PF05567 Neisseria PilC beta-propeller domain HQ395_23595 PF02401 LytB protein HQ395_23600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ395_23605 PF01252 Signal peptidase (SPase) II HQ395_23610 PF08264 Anticodon-binding domain of tRNA HQ395_23610 PF00133 tRNA synthetases class I (I, L, M and V) HQ395_23610 PF06827 Zinc finger found in FPG and IleRS HQ395_23615 PF06574 FAD synthetase HQ395_23615 PF01687 Riboflavin kinase HQ395_23625 PF03023 Lipid II flippase MurJ HQ395_23630 PF01649 Ribosomal protein S20 HQ395_23635 PF01022 Bacterial regulatory protein, arsR family HQ395_23640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_23640 PF03466 LysR substrate binding domain HQ395_23650 PF06965 Na+/H+ antiporter 1 HQ395_23655 PF00303 Thymidylate synthase HQ395_23660 PF01790 Prolipoprotein diacylglyceryl transferase HQ395_23665 PF00391 PEP-utilising enzyme, mobile domain HQ395_23665 PF05524 PEP-utilising enzyme, N-terminal HQ395_23665 PF01590 GAF domain HQ395_23665 PF02896 PEP-utilising enzyme, TIM barrel domain HQ395_23670 PF00293 NUDIX domain HQ395_23675 PF02976 DNA mismatch repair enzyme MutH HQ395_23685 PF01245 Ribosomal protein L19 HQ395_23690 PF01746 tRNA (Guanine-1)-methyltransferase HQ395_23695 PF05239 PRC-barrel domain HQ395_23695 PF01782 RimM N-terminal domain HQ395_23700 PF00886 Ribosomal protein S16 HQ395_23705 PF02881 SRP54-type protein, helical bundle domain HQ395_23705 PF02978 Signal peptide binding domain HQ395_23705 PF00448 SRP54-type protein, GTPase domain HQ395_23710 PF01578 Cytochrome C assembly protein HQ395_23715 PF00571 CBS domain HQ395_23715 PF03471 Transporter associated domain HQ395_23715 PF01595 Cyclin M transmembrane N-terminal domain HQ395_23720 PF02082 Transcriptional regulator HQ395_23725 PF00042 Globin HQ395_23725 PF00175 Oxidoreductase NAD-binding domain HQ395_23725 PF00970 Oxidoreductase FAD-binding domain HQ395_23735 PF00056 lactate/malate dehydrogenase, NAD binding domain HQ395_23735 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HQ395_23740 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_23745 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_23750 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ395_23755 PF00005 ABC transporter HQ395_23760 PF02863 Arginine repressor, C-terminal domain HQ395_23760 PF01316 Arginine repressor, DNA binding domain HQ395_23765 PF04261 Dyp-type peroxidase family HQ395_23770 PF00005 ABC transporter HQ395_23770 PF08402 TOBE domain HQ395_23780 PF13416 Bacterial extracellular solute-binding protein HQ395_23785 PF00543 Nitrogen regulatory protein P-II HQ395_23790 PF00472 RF-1 domain HQ395_23795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ395_23795 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ395_23800 PF07670 Nucleoside recognition HQ395_23800 PF07662 Na+ dependent nucleoside transporter C-terminus HQ395_23800 PF01773 Na+ dependent nucleoside transporter N-terminus HQ395_23805 PF03466 LysR substrate binding domain HQ395_23805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_23810 PF00255 Glutathione peroxidase HQ395_23820 PF02595 Glycerate kinase family HQ395_23825 PF02447 GntP family permease HQ395_23830 PF13556 PucR C-terminal helix-turn-helix domain HQ395_23830 PF05651 Putative sugar diacid recognition HQ395_23830 PF17853 GGDEF-like domain HQ395_23835 PF06062 Uncharacterised protein family (UPF0231) HQ395_23850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_23850 PF08447 PAS fold HQ395_23855 PF03372 Endonuclease/Exonuclease/phosphatase family HQ395_23870 PF00271 Helicase conserved C-terminal domain HQ395_23870 PF00270 DEAD/DEAH box helicase HQ395_23880 PF08534 Redoxin HQ395_23890 PF17967 Pullulanase N2 domain HQ395_23890 PF18494 Pullulanase Ins domain HQ395_23890 PF03714 Bacterial pullanase-associated domain HQ395_23890 PF11852 Domain of unknown function (DUF3372) HQ395_23890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ395_23905 PF02583 Metal-sensitive transcriptional repressor HQ395_23910 PF00155 Aminotransferase class I and II HQ395_23915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_23915 PF03466 LysR substrate binding domain HQ395_23925 PF04055 Radical SAM superfamily HQ395_23930 PF11230 Protein of unknown function (DUF3029) HQ395_23950 PF07676 WD40-like Beta Propeller Repeat HQ395_23950 PF03572 Peptidase family S41 HQ395_23950 PF14684 Tricorn protease C1 domain HQ395_23950 PF14685 Tricorn protease PDZ domain HQ395_23980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ395_23980 PF00672 HAMP domain HQ395_23980 PF12729 Four helix bundle sensory module for signal transduction HQ395_23985 PF18416 N-acetylglucosamine binding protein domain 2 HQ395_23985 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ395_23990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ395_23990 PF03466 LysR substrate binding domain HQ395_23995 PF00005 ABC transporter HQ395_23995 PF12857 TOBE-like domain HQ395_24000 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_24005 PF00528 Binding-protein-dependent transport system inner membrane component HQ395_24020 PF13194 Domain of unknown function (DUF4010) HQ395_24025 PF12464 Maltose acetyltransferase HQ395_24025 PF14602 Hexapeptide repeat of succinyl-transferase HQ395_24060 PF00206 Lyase HQ395_24060 PF14698 Argininosuccinate lyase C-terminal HQ395_24065 PF00764 Arginosuccinate synthase HQ395_24070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ395_24070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ395_24075 PF00696 Amino acid kinase family HQ395_24080 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ395_24080 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ395_24085 PF07687 Peptidase dimerisation domain HQ395_24085 PF01546 Peptidase family M20/M25/M40 HQ395_24090 PF00311 Phosphoenolpyruvate carboxylase HQ395_24095 PF00696 Amino acid kinase family HQ395_24095 PF00742 Homoserine dehydrogenase HQ395_24095 PF03447 Homoserine dehydrogenase, NAD binding domain HQ395_24100 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ395_24105 PF01340 Met Apo-repressor, MetJ HQ395_24110 PF12833 Helix-turn-helix domain HQ395_24110 PF06445 GyrI-like small molecule binding domain HQ395_24115 PF01588 Putative tRNA binding domain HQ395_24120 PF03222 Tryptophan/tyrosine permease family HQ395_24125 PF00459 Inositol monophosphatase family HQ395_24130 PF00293 NUDIX domain HQ395_24135 PF13419 Haloacid dehalogenase-like hydrolase HQ395_24140 PF01479 S4 domain HQ395_24140 PF00579 tRNA synthetases class I (W and Y) HQ395_24145 PF00196 Bacterial regulatory proteins, luxR family HQ395_24150 PF01203 Type II secretion system (T2SS), protein N HQ395_24155 PF04612 Type II secretion system (T2SS), protein M HQ395_24160 PF05134 Type II secretion system (T2SS), protein L HQ395_24160 PF12693 GspL periplasmic domain HQ395_24165 PF03934 Type II secretion system (T2SS), protein K HQ395_24175 PF07963 Prokaryotic N-terminal methylation motif HQ395_24175 PF11612 Type II secretion system (T2SS), protein J HQ395_24180 PF02501 Type II secretion system (T2SS), protein I HQ395_24180 PF07963 Prokaryotic N-terminal methylation motif HQ395_24185 PF07963 Prokaryotic N-terminal methylation motif HQ395_24185 PF12019 Type II transport protein GspH HQ395_24195 PF07963 Prokaryotic N-terminal methylation motif HQ395_24195 PF08334 Type II secretion system (T2SS), protein G HQ395_24200 PF00482 Type II secretion system (T2SS), protein F