locus-tag class description HQ396_00050 PF00293 NUDIX domain HQ396_00050 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HQ396_00050 PF09297 NADH pyrophosphatase zinc ribbon domain HQ396_00060 PF00072 Response regulator receiver domain HQ396_00060 PF00486 Transcriptional regulatory protein, C terminal HQ396_00065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_00070 PF12704 MacB-like periplasmic core domain HQ396_00070 PF02687 FtsX-like permease family HQ396_00070 PF00005 ABC transporter HQ396_00075 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_00080 PF00005 ABC transporter HQ396_00085 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_00090 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_00140 PF08239 Bacterial SH3 domain HQ396_00150 PF00293 NUDIX domain HQ396_00150 PF09297 NADH pyrophosphatase zinc ribbon domain HQ396_00155 PF01208 Uroporphyrinogen decarboxylase (URO-D) HQ396_00160 PF00480 ROK family HQ396_00165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ396_00165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ396_00170 PF00162 Phosphoglycerate kinase HQ396_00175 PF01116 Fructose-bisphosphate aldolase class-II HQ396_00180 PF01266 FAD dependent oxidoreductase HQ396_00190 PF11412 Disulphide bond corrector protein DsbC HQ396_00190 PF02683 Cytochrome C biogenesis protein transmembrane region HQ396_00195 PF03091 CutA1 divalent ion tolerance protein HQ396_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_00210 PF03466 LysR substrate binding domain HQ396_00215 PF01571 Aminomethyltransferase folate-binding domain HQ396_00220 PF03937 Flavinator of succinate dehydrogenase HQ396_00230 PF00890 FAD binding domain HQ396_00230 PF02910 Fumarate reductase flavoprotein C-term HQ396_00235 PF08281 Sigma-70, region 4 HQ396_00235 PF04542 Sigma-70 region 2 HQ396_00240 PF03873 Anti sigma-E protein RseA, C-terminal domain HQ396_00240 PF03872 Anti sigma-E protein RseA, N-terminal domain HQ396_00245 PF03888 MucB/RseB N-terminal domain HQ396_00245 PF17188 MucB/RseB C-terminal domain HQ396_00255 PF00679 Elongation factor G C-terminus HQ396_00255 PF00009 Elongation factor Tu GTP binding domain HQ396_00255 PF03144 Elongation factor Tu domain 2 HQ396_00255 PF06421 GTP-binding protein LepA C-terminus HQ396_00260 PF10502 Signal peptidase, peptidase S26 HQ396_00265 PF00035 Double-stranded RNA binding motif HQ396_00265 PF14622 Ribonuclease-III-like HQ396_00270 PF07650 KH domain HQ396_00270 PF01926 50S ribosome-binding GTPase HQ396_00275 PF02565 Recombination protein O C terminal HQ396_00275 PF11967 Recombination protein O N terminal HQ396_00280 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HQ396_00290 PF01116 Fructose-bisphosphate aldolase class-II HQ396_00295 PF01979 Amidohydrolase family HQ396_00300 PF03610 PTS system fructose IIA component HQ396_00305 PF03613 PTS system mannose/fructose/sorbose family IID component HQ396_00310 PF03609 PTS system sorbose-specific iic component HQ396_00315 PF03830 PTS system sorbose subfamily IIB component HQ396_00320 PF01380 SIS domain HQ396_00325 PF08013 Tagatose 6 phosphate kinase HQ396_00330 PF00455 DeoR C terminal sensor domain HQ396_00330 PF08220 DeoR-like helix-turn-helix domain HQ396_00340 PF07308 Protein of unknown function (DUF1456) HQ396_00345 PF01627 Hpt domain HQ396_00345 PF00672 HAMP domain HQ396_00345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_00345 PF00512 His Kinase A (phospho-acceptor) domain HQ396_00345 PF00072 Response regulator receiver domain HQ396_00345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ396_00355 PF13291 ACT domain HQ396_00355 PF04607 Region found in RelA / SpoT proteins HQ396_00355 PF02824 TGS domain HQ396_00360 PF03819 MazG nucleotide pyrophosphohydrolase domain HQ396_00365 PF00117 Glutamine amidotransferase class-I HQ396_00365 PF06418 CTP synthase N-terminus HQ396_00370 PF00113 Enolase, C-terminal TIM barrel domain HQ396_00370 PF03952 Enolase, N-terminal domain HQ396_00380 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HQ396_00385 PF02542 YgbB family HQ396_00390 PF01142 tRNA pseudouridine synthase D (TruD) HQ396_00395 PF01975 Survival protein SurE HQ396_00405 PF09335 SNARE associated Golgi protein HQ396_00410 PF01476 LysM domain HQ396_00410 PF01551 Peptidase family M23 HQ396_00415 PF00140 Sigma-70 factor, region 1.2 HQ396_00415 PF04542 Sigma-70 region 2 HQ396_00415 PF04539 Sigma-70 region 3 HQ396_00415 PF04545 Sigma-70, region 4 HQ396_00420 PF00814 Glycoprotease family HQ396_00425 PF01165 Ribosomal protein S21 HQ396_00430 PF09424 Yqey-like protein HQ396_00435 PF10410 DnaB-helicase binding domain of primase HQ396_00435 PF08278 DNA primase DnaG DnaB-binding HQ396_00435 PF08275 DNA primase catalytic core, N-terminal domain HQ396_00435 PF01807 CHC2 zinc finger HQ396_00440 PF04545 Sigma-70, region 4 HQ396_00440 PF00140 Sigma-70 factor, region 1.2 HQ396_00440 PF04539 Sigma-70 region 3 HQ396_00440 PF04542 Sigma-70 region 2 HQ396_00440 PF04546 Sigma-70, non-essential region HQ396_00440 PF03979 Sigma-70 factor, region 1.1 HQ396_00480 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HQ396_00480 PF02843 Phosphoribosylglycinamide synthetase, C domain HQ396_00480 PF02844 Phosphoribosylglycinamide synthetase, N domain HQ396_00485 PF01808 AICARFT/IMPCHase bienzyme HQ396_00485 PF02142 MGS-like domain HQ396_00490 PF13411 MerR HTH family regulatory protein HQ396_00495 PF01872 RibD C-terminal domain HQ396_00500 PF03889 Alternative ribosome-rescue factor A HQ396_00505 PF06969 HemN C-terminal domain HQ396_00505 PF04055 Radical SAM superfamily HQ396_00510 PF01725 Ham1 family HQ396_00515 PF07690 Major Facilitator Superfamily HQ396_00520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ396_00520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ396_00530 PF13302 Acetyltransferase (GNAT) domain HQ396_00540 PF04151 Bacterial pre-peptidase C-terminal domain HQ396_00540 PF02868 Thermolysin metallopeptidase, alpha-helical domain HQ396_00540 PF01447 Thermolysin metallopeptidase, catalytic domain HQ396_00540 PF07504 Fungalysin/Thermolysin Propeptide Motif HQ396_00540 PF03413 Peptidase propeptide and YPEB domain HQ396_00545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_00545 PF03466 LysR substrate binding domain HQ396_00550 PF07690 Major Facilitator Superfamily HQ396_00555 PF00267 Gram-negative porin HQ396_00560 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ396_00565 PF10415 Fumarase C C-terminus HQ396_00565 PF00206 Lyase HQ396_00570 PF04186 FxsA cytoplasmic membrane protein HQ396_00575 PF01554 MatE HQ396_00580 PF00166 Chaperonin 10 Kd subunit HQ396_00585 PF00118 TCP-1/cpn60 chaperonin family HQ396_00595 PF13188 PAS domain HQ396_00595 PF03707 Bacterial signalling protein N terminal repeat HQ396_00595 PF00563 EAL domain HQ396_00595 PF00990 Diguanylate cyclase, GGDEF domain HQ396_00605 PF00849 RNA pseudouridylate synthase HQ396_00610 PF18339 RapA N-terminal Tudor like domain 1 HQ396_00610 PF00271 Helicase conserved C-terminal domain HQ396_00610 PF18337 RapA N-terminal Tudor like domain HQ396_00610 PF00176 SNF2 family N-terminal domain HQ396_00610 PF12137 RNA polymerase recycling family C-terminal HQ396_00640 PF00317 Ribonucleotide reductase, all-alpha domain HQ396_00640 PF02867 Ribonucleotide reductase, barrel domain HQ396_00640 PF08343 Ribonucleotide reductase N-terminal HQ396_00650 PF02562 PhoH-like protein HQ396_00650 PF13638 PIN domain HQ396_00660 PF00005 ABC transporter HQ396_00665 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_00685 PF00694 Aconitase C-terminal domain HQ396_00690 PF00330 Aconitase family (aconitate hydratase) HQ396_00695 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ396_00700 PF00682 HMGL-like HQ396_00700 PF08502 LeuA allosteric (dimerisation) domain HQ396_00710 PF01569 PAP2 superfamily HQ396_00715 PF04101 Glycosyltransferase family 28 C-terminal domain HQ396_00715 PF03033 Glycosyltransferase family 28 N-terminal domain HQ396_00725 PF10369 Small subunit of acetolactate synthase HQ396_00730 PF07085 DRTGG domain HQ396_00730 PF01515 Phosphate acetyl/butaryl transferase HQ396_00735 PF00871 Acetokinase family HQ396_00740 PF04217 Protein of unknown function, DUF412 HQ396_00745 PF03887 YfbU domain HQ396_00755 PF01842 ACT domain HQ396_00785 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HQ396_00810 PF13286 Phosphohydrolase-associated domain HQ396_00810 PF01966 HD domain HQ396_00830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_00830 PF00672 HAMP domain HQ396_00835 PF02357 Transcription termination factor nusG HQ396_00845 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_00850 PF09383 NIL domain HQ396_00850 PF00005 ABC transporter HQ396_00860 PF00480 ROK family HQ396_00875 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HQ396_00890 PF08676 MutL C terminal dimerisation domain HQ396_00890 PF01119 DNA mismatch repair protein, C-terminal domain HQ396_00900 PF17209 Hfq protein HQ396_00905 PF01926 50S ribosome-binding GTPase HQ396_00905 PF13167 GTP-binding GTPase N-terminal HQ396_00905 PF16360 GTP-binding GTPase Middle Region HQ396_00910 PF12221 Bacterial membrane protein N terminal HQ396_00910 PF01145 SPFH domain / Band 7 family HQ396_00915 PF01145 SPFH domain / Band 7 family HQ396_00920 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HQ396_00925 PF00348 Polyprenyl synthetase HQ396_00930 PF00829 Ribosomal prokaryotic L21 protein HQ396_00935 PF01016 Ribosomal L27 protein HQ396_00940 PF01018 GTP1/OBG HQ396_00940 PF01926 50S ribosome-binding GTPase HQ396_00945 PF07670 Nucleoside recognition HQ396_00950 PF13193 AMP-binding enzyme C-terminal domain HQ396_00950 PF00501 AMP-binding enzyme HQ396_00970 PF00296 Luciferase-like monooxygenase HQ396_00980 PF00149 Calcineurin-like phosphoesterase HQ396_00985 PF04379 ApaG domain HQ396_00990 PF00398 Ribosomal RNA adenine dimethylase HQ396_00995 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HQ396_01000 PF00639 PPIC-type PPIASE domain HQ396_01000 PF09312 SurA N-terminal domain HQ396_01005 PF04453 LPS transport system D HQ396_01005 PF03968 OstA-like protein HQ396_01010 PF01636 Phosphotransferase enzyme family HQ396_01015 PF00483 Nucleotidyl transferase HQ396_01020 PF00226 DnaJ domain HQ396_01020 PF05099 Tellurite resistance protein TerB HQ396_01025 PF00860 Permease family HQ396_01035 PF12848 ABC transporter HQ396_01035 PF00005 ABC transporter HQ396_01055 PF01048 Phosphorylase superfamily HQ396_01060 PF01464 Transglycosylase SLT domain HQ396_01075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_01075 PF03466 LysR substrate binding domain HQ396_01080 PF01048 Phosphorylase superfamily HQ396_01085 PF01773 Na+ dependent nucleoside transporter N-terminus HQ396_01085 PF07662 Na+ dependent nucleoside transporter C-terminus HQ396_01085 PF07670 Nucleoside recognition HQ396_01090 PF01791 DeoC/LacD family aldolase HQ396_01100 PF01370 NAD dependent epimerase/dehydratase family HQ396_01110 PF00005 ABC transporter HQ396_01125 PF06228 Haem utilisation ChuX/HutX HQ396_01130 PF01243 Pyridoxamine 5'-phosphate oxidase HQ396_01150 PF00593 TonB dependent receptor HQ396_01150 PF07715 TonB-dependent Receptor Plug Domain HQ396_01155 PF12832 MFS_1 like family HQ396_01160 PF13443 Cro/C1-type HTH DNA-binding domain HQ396_01170 PF00512 His Kinase A (phospho-acceptor) domain HQ396_01170 PF00989 PAS fold HQ396_01170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_01175 PF08329 Chitinase A, N-terminal domain HQ396_01175 PF00704 Glycosyl hydrolases family 18 HQ396_01180 PF17945 Beta/Gamma crystallin HQ396_01180 PF12561 ToxR activated gene A lipoprotein domain HQ396_01190 PF13847 Methyltransferase domain HQ396_01195 PF13545 Crp-like helix-turn-helix domain HQ396_01195 PF00027 Cyclic nucleotide-binding domain HQ396_01200 PF02566 OsmC-like protein HQ396_01215 PF00485 Phosphoribulokinase / Uridine kinase family HQ396_01220 PF00893 Small Multidrug Resistance protein HQ396_01225 PF00892 EamA-like transporter family HQ396_01230 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HQ396_01235 PF01522 Polysaccharide deacetylase HQ396_01260 PF06794 Uncharacterised protein family (UPF0270) HQ396_01265 PF00563 EAL domain HQ396_01265 PF00990 Diguanylate cyclase, GGDEF domain HQ396_01265 PF00360 Phytochrome region HQ396_01265 PF01590 GAF domain HQ396_01270 PF00561 alpha/beta hydrolase fold HQ396_01275 PF01584 CheW-like domain HQ396_01275 PF00072 Response regulator receiver domain HQ396_01285 PF09526 Probable metal-binding protein (DUF2387) HQ396_01290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ396_01295 PF04102 SlyX HQ396_01305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ396_01305 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ396_01310 PF02954 Bacterial regulatory protein, Fis family HQ396_01310 PF00072 Response regulator receiver domain HQ396_01310 PF00158 Sigma-54 interaction domain HQ396_01335 PF12792 CSS motif domain associated with EAL HQ396_01335 PF00563 EAL domain HQ396_01345 PF00772 DnaB-like helicase N terminal domain HQ396_01345 PF03796 DnaB-like helicase C terminal domain HQ396_01350 PF00842 Alanine racemase, C-terminal domain HQ396_01350 PF01168 Alanine racemase, N-terminal domain HQ396_01355 PF12838 4Fe-4S dicluster domain HQ396_01360 PF01136 Peptidase family U32 HQ396_01360 PF16325 Peptidase family U32 C-terminal domain HQ396_01365 PF00989 PAS fold HQ396_01365 PF01590 GAF domain HQ396_01365 PF00563 EAL domain HQ396_01365 PF00990 Diguanylate cyclase, GGDEF domain HQ396_01390 PF00266 Aminotransferase class-V HQ396_01395 PF01339 CheB methylesterase HQ396_01395 PF00072 Response regulator receiver domain HQ396_01400 PF03975 CheD chemotactic sensory transduction HQ396_01405 PF01739 CheR methyltransferase, SAM binding domain HQ396_01405 PF03705 CheR methyltransferase, all-alpha domain HQ396_01410 PF00672 HAMP domain HQ396_01410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_01410 PF02203 Tar ligand binding domain homologue HQ396_01415 PF01584 CheW-like domain HQ396_01420 PF12729 Four helix bundle sensory module for signal transduction HQ396_01420 PF00672 HAMP domain HQ396_01420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_01425 PF01627 Hpt domain HQ396_01425 PF07194 P2 response regulator binding domain HQ396_01425 PF01584 CheW-like domain HQ396_01425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_01425 PF02895 Signal transducing histidine kinase, homodimeric domain HQ396_01435 PF00072 Response regulator receiver domain HQ396_01440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_01440 PF00672 HAMP domain HQ396_01440 PF02743 Cache domain HQ396_01445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ396_01445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ396_01450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_01450 PF03466 LysR substrate binding domain HQ396_01455 PF01810 LysE type translocator HQ396_01460 PF01136 Peptidase family U32 HQ396_01460 PF12392 Collagenase HQ396_01470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ396_01470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ396_01475 PF02805 Metal binding domain of Ada HQ396_01475 PF12833 Helix-turn-helix domain HQ396_01475 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ396_01475 PF06029 AlkA N-terminal domain HQ396_01510 PF00106 short chain dehydrogenase HQ396_01515 PF03573 outer membrane porin, OprD family HQ396_01520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_01520 PF00672 HAMP domain HQ396_01520 PF02743 Cache domain HQ396_01530 PF00596 Class II Aldolase and Adducin N-terminal domain HQ396_01535 PF00465 Iron-containing alcohol dehydrogenase HQ396_01540 PF12833 Helix-turn-helix domain HQ396_01540 PF02311 AraC-like ligand binding domain HQ396_01550 PF06134 L-rhamnose isomerase (RhaA) HQ396_01555 PF06379 L-rhamnose-proton symport protein (RhaT) HQ396_01560 PF05336 L-rhamnose mutarotase HQ396_01590 PF00271 Helicase conserved C-terminal domain HQ396_01595 PF11799 impB/mucB/samB family C-terminal domain HQ396_01595 PF13438 Domain of unknown function (DUF4113) HQ396_01595 PF00817 impB/mucB/samB family HQ396_01595 PF11798 IMS family HHH motif HQ396_01600 PF00717 Peptidase S24-like HQ396_01630 PF03793 PASTA domain HQ396_01630 PF00069 Protein kinase domain HQ396_01645 PF04002 RadC-like JAB domain HQ396_01690 PF09588 YqaJ-like viral recombinase domain HQ396_01720 PF01817 Chorismate mutase type II HQ396_01720 PF00800 Prephenate dehydratase HQ396_01750 PF08349 Protein of unknown function (DUF1722) HQ396_01755 PF13411 MerR HTH family regulatory protein HQ396_01770 PF00106 short chain dehydrogenase HQ396_01810 PF00210 Ferritin-like domain HQ396_01815 PF03063 Prismane/CO dehydrogenase family HQ396_01820 PF00970 Oxidoreductase FAD-binding domain HQ396_01820 PF00042 Globin HQ396_01820 PF00175 Oxidoreductase NAD-binding domain HQ396_01825 PF16363 GDP-mannose 4,6 dehydratase HQ396_01830 PF13462 Thioredoxin HQ396_01830 PF06965 Na+/H+ antiporter 1 HQ396_01840 PF03472 Autoinducer binding domain HQ396_01840 PF00196 Bacterial regulatory proteins, luxR family HQ396_01845 PF05638 Type VI secretion system effector, Hcp HQ396_01850 PF04717 Type VI secretion system, phage-baseplate injector HQ396_01855 PF13503 Domain of unknown function (DUF4123) HQ396_01890 PF03306 Alpha-acetolactate decarboxylase HQ396_01900 PF01965 DJ-1/PfpI family HQ396_01905 PF08546 Ketopantoate reductase PanE/ApbA C terminal HQ396_01905 PF02558 Ketopantoate reductase PanE/ApbA HQ396_01910 PF04461 Protein of unknown function (DUF520) HQ396_01915 PF03502 Nucleoside-specific channel-forming protein, Tsx HQ396_01920 PF07690 Major Facilitator Superfamily HQ396_01930 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ396_01940 PF05175 Methyltransferase small domain HQ396_01945 PF01722 BolA-like protein HQ396_01950 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HQ396_01950 PF11973 NQRA C-terminal domain HQ396_01955 PF03116 NQR2, RnfD, RnfE family HQ396_01960 PF04205 FMN-binding domain HQ396_01965 PF02508 Rnf-Nqr subunit, membrane protein HQ396_01970 PF02508 Rnf-Nqr subunit, membrane protein HQ396_01975 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ396_01975 PF00970 Oxidoreductase FAD-binding domain HQ396_01975 PF00175 Oxidoreductase NAD-binding domain HQ396_01980 PF02424 ApbE family HQ396_01995 PF00817 impB/mucB/samB family HQ396_01995 PF11799 impB/mucB/samB family C-terminal domain HQ396_01995 PF11798 IMS family HHH motif HQ396_02000 PF00672 HAMP domain HQ396_02000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_02005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_02005 PF03466 LysR substrate binding domain HQ396_02015 PF04241 Protein of unknown function (DUF423) HQ396_02020 PF01728 FtsJ-like methyltransferase HQ396_02020 PF18125 RlmM ferredoxin-like domain HQ396_02030 PF18324 Hypothetical protein TT1725 HQ396_02030 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ396_02045 PF00990 Diguanylate cyclase, GGDEF domain HQ396_02055 PF14489 QueF-like protein HQ396_02055 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HQ396_02060 PF07348 Syd protein (SUKH-2) HQ396_02065 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ396_02090 PF04287 tRNA pseudouridine synthase C HQ396_02095 PF00849 RNA pseudouridylate synthase HQ396_02100 PF00258 Flavodoxin HQ396_02105 PF02264 LamB porin HQ396_02110 PF07148 Maltose operon periplasmic protein precursor (MalM) HQ396_02115 PF02378 Phosphotransferase system, EIIC HQ396_02115 PF00367 phosphotransferase system, EIIB HQ396_02120 PF11944 Protein of unknown function (DUF3461) HQ396_02125 PF00132 Bacterial transferase hexapeptide (six repeats) HQ396_02125 PF14602 Hexapeptide repeat of succinyl-transferase HQ396_02125 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HQ396_02130 PF01842 ACT domain HQ396_02130 PF08335 GlnD PII-uridylyltransferase HQ396_02130 PF01966 HD domain HQ396_02130 PF01909 Nucleotidyltransferase domain HQ396_02140 PF00318 Ribosomal protein S2 HQ396_02145 PF00889 Elongation factor TS HQ396_02150 PF00696 Amino acid kinase family HQ396_02155 PF01765 Ribosome recycling factor HQ396_02160 PF01255 Putative undecaprenyl diphosphate synthase HQ396_02170 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HQ396_02170 PF13288 DXP reductoisomerase C-terminal domain HQ396_02170 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HQ396_02175 PF17820 PDZ domain HQ396_02175 PF02163 Peptidase family M50 HQ396_02180 PF07244 Surface antigen variable number repeat HQ396_02180 PF01103 Surface antigen HQ396_02185 PF03938 Outer membrane protein (OmpH-like) HQ396_02190 PF00132 Bacterial transferase hexapeptide (six repeats) HQ396_02190 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HQ396_02195 PF07977 FabA-like domain HQ396_02200 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HQ396_02200 PF00132 Bacterial transferase hexapeptide (six repeats) HQ396_02205 PF02684 Lipid-A-disaccharide synthetase HQ396_02210 PF01351 Ribonuclease HII HQ396_02215 PF02811 PHP domain HQ396_02215 PF01336 OB-fold nucleic acid binding domain HQ396_02215 PF14579 Helix-hairpin-helix motif HQ396_02215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ396_02215 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ396_02220 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HQ396_02230 PF13520 Amino acid permease HQ396_02235 PF01276 Orn/Lys/Arg decarboxylase, major domain HQ396_02235 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HQ396_02235 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HQ396_02240 PF08543 Phosphomethylpyrimidine kinase HQ396_02250 PF03466 LysR substrate binding domain HQ396_02250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_02260 PF12706 Beta-lactamase superfamily domain HQ396_02265 PF03466 LysR substrate binding domain HQ396_02265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_02270 PF13520 Amino acid permease HQ396_02275 PF13302 Acetyltransferase (GNAT) domain HQ396_02290 PF01431 Peptidase family M13 HQ396_02290 PF05649 Peptidase family M13 HQ396_02300 PF00990 Diguanylate cyclase, GGDEF domain HQ396_02355 PF00535 Glycosyl transferase family 2 HQ396_02370 PF01471 Putative peptidoglycan binding domain HQ396_02370 PF03734 L,D-transpeptidase catalytic domain HQ396_02375 PF05951 Bacterial protein of unknown function (DUF882) HQ396_02405 PF00533 BRCA1 C Terminus (BRCT) domain HQ396_02405 PF01653 NAD-dependent DNA ligase adenylation domain HQ396_02405 PF03120 NAD-dependent DNA ligase OB-fold domain HQ396_02405 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HQ396_02405 PF12826 Helix-hairpin-helix motif HQ396_02415 PF03477 ATP cone domain HQ396_02415 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ396_02425 PF01679 Proteolipid membrane potential modulator HQ396_02450 PF00529 HlyD membrane-fusion protein of T1SS HQ396_02450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_02455 PF01047 MarR family HQ396_02460 PF03390 2-hydroxycarboxylate transporter family HQ396_02495 PF00892 EamA-like transporter family HQ396_02530 PF00486 Transcriptional regulatory protein, C terminal HQ396_02530 PF00072 Response regulator receiver domain HQ396_02540 PF12849 PBP superfamily domain HQ396_02545 PF01435 Peptidase family M48 HQ396_02555 PF00480 ROK family HQ396_02560 PF03932 CutC family HQ396_02565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ396_02565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ396_02590 PF00293 NUDIX domain HQ396_02600 PF08534 Redoxin HQ396_02610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ396_02610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ396_02630 PF00990 Diguanylate cyclase, GGDEF domain HQ396_02630 PF00072 Response regulator receiver domain HQ396_02640 PF01554 MatE HQ396_02645 PF12833 Helix-turn-helix domain HQ396_02650 PF00390 Malic enzyme, N-terminal domain HQ396_02650 PF03949 Malic enzyme, NAD binding domain HQ396_02655 PF00691 OmpA family HQ396_02655 PF01389 OmpA-like transmembrane domain HQ396_02660 PF00691 OmpA family HQ396_02660 PF01389 OmpA-like transmembrane domain HQ396_02665 PF00691 OmpA family HQ396_02665 PF01389 OmpA-like transmembrane domain HQ396_02680 PF00209 Sodium:neurotransmitter symporter family HQ396_02685 PF01734 Patatin-like phospholipase HQ396_02690 PF00990 Diguanylate cyclase, GGDEF domain HQ396_02695 PF00529 HlyD membrane-fusion protein of T1SS HQ396_02695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_02700 PF00873 AcrB/AcrD/AcrF family HQ396_02710 PF11842 Domain of unknown function (DUF3362) HQ396_02710 PF08497 Radical SAM N-terminal HQ396_02710 PF04055 Radical SAM superfamily HQ396_02740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ396_02750 PF02075 Crossover junction endodeoxyribonuclease RuvC HQ396_02755 PF00230 Major intrinsic protein HQ396_02760 PF01464 Transglycosylase SLT domain HQ396_02760 PF10145 Phage-related minor tail protein HQ396_02760 PF01551 Peptidase family M23 HQ396_02765 PF00128 Alpha amylase, catalytic domain HQ396_02795 PF01842 ACT domain HQ396_02795 PF00551 Formyl transferase HQ396_02800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ396_02810 PF00085 Thioredoxin HQ396_02815 PF01648 4'-phosphopantetheinyl transferase superfamily HQ396_02820 PF00877 NlpC/P60 family HQ396_02825 PF05971 RNA methyltransferase HQ396_02830 PF01575 MaoC like domain HQ396_02840 PF17969 L,D-transpeptidase C-terminal domain HQ396_02840 PF01476 LysM domain HQ396_02840 PF03734 L,D-transpeptidase catalytic domain HQ396_02850 PF00873 AcrB/AcrD/AcrF family HQ396_02855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_02855 PF00529 HlyD membrane-fusion protein of T1SS HQ396_02860 PF00072 Response regulator receiver domain HQ396_02860 PF00486 Transcriptional regulatory protein, C terminal HQ396_02865 PF00512 His Kinase A (phospho-acceptor) domain HQ396_02865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_02865 PF13426 PAS domain HQ396_02865 PF00672 HAMP domain HQ396_02870 PF00893 Small Multidrug Resistance protein HQ396_02875 PF00893 Small Multidrug Resistance protein HQ396_02885 PF06130 Phosphate propanoyltransferase HQ396_02890 PF00936 BMC domain HQ396_02895 PF13187 4Fe-4S dicluster domain HQ396_02895 PF04055 Radical SAM superfamily HQ396_02900 PF01228 Glycine radical HQ396_02900 PF02901 Pyruvate formate lyase-like HQ396_02905 PF00465 Iron-containing alcohol dehydrogenase HQ396_02905 PF00171 Aldehyde dehydrogenase family HQ396_02920 PF00936 BMC domain HQ396_02925 PF00936 BMC domain HQ396_02930 PF00936 BMC domain HQ396_02950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_02950 PF03466 LysR substrate binding domain HQ396_02960 PF00384 Molybdopterin oxidoreductase HQ396_02975 PF00440 Bacterial regulatory proteins, tetR family HQ396_02980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ396_02980 PF02770 Acyl-CoA dehydrogenase, middle domain HQ396_02980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ396_02980 PF09317 Domain of unknown function (DUF1974) HQ396_02995 PF00224 Pyruvate kinase, barrel domain HQ396_02995 PF02887 Pyruvate kinase, alpha/beta domain HQ396_03000 PF01380 SIS domain HQ396_03000 PF01418 Helix-turn-helix domain, rpiR family HQ396_03010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_03015 PF00486 Transcriptional regulatory protein, C terminal HQ396_03015 PF00072 Response regulator receiver domain HQ396_03025 PF00072 Response regulator receiver domain HQ396_03035 PF02049 Flagellar hook-basal body complex protein FliE HQ396_03040 PF01514 Secretory protein of YscJ/FliF family HQ396_03040 PF08345 Flagellar M-ring protein C-terminal HQ396_03045 PF14842 FliG N-terminal domain HQ396_03045 PF14841 FliG middle domain HQ396_03045 PF01706 FliG C-terminal domain HQ396_03055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ396_03055 PF18269 T3SS EscN ATPase C-terminal domain HQ396_03075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ396_03075 PF02154 Flagellar motor switch protein FliM HQ396_03080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ396_03095 PF01313 Bacterial export proteins, family 3 HQ396_03100 PF01311 Bacterial export proteins, family 1 HQ396_03120 PF10609 NUBPL iron-transfer P-loop NTPase HQ396_03125 PF04539 Sigma-70 region 3 HQ396_03125 PF04545 Sigma-70, region 4 HQ396_03125 PF04542 Sigma-70 region 2 HQ396_03130 PF00072 Response regulator receiver domain HQ396_03135 PF04344 Chemotaxis phosphatase, CheZ HQ396_03140 PF01584 CheW-like domain HQ396_03140 PF01627 Hpt domain HQ396_03140 PF00072 Response regulator receiver domain HQ396_03140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_03140 PF02895 Signal transducing histidine kinase, homodimeric domain HQ396_03145 PF00072 Response regulator receiver domain HQ396_03145 PF01339 CheB methylesterase HQ396_03150 PF01618 MotA/TolQ/ExbB proton channel family HQ396_03155 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ396_03155 PF00691 OmpA family HQ396_03160 PF13614 AAA domain HQ396_03170 PF01584 CheW-like domain HQ396_03180 PF00005 ABC transporter HQ396_03190 PF01578 Cytochrome C assembly protein HQ396_03195 PF04995 Heme exporter protein D (CcmD) HQ396_03200 PF03100 CcmE HQ396_03210 PF08534 Redoxin HQ396_03215 PF03918 Cytochrome C biogenesis protein HQ396_03220 PF03918 Cytochrome C biogenesis protein HQ396_03225 PF04333 MlaA lipoprotein HQ396_03230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ396_03230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ396_03235 PF00462 Glutaredoxin HQ396_03240 PF01029 NusB family HQ396_03240 PF01189 16S rRNA methyltransferase RsmB/F HQ396_03255 PF01243 Pyridoxamine 5'-phosphate oxidase HQ396_03255 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HQ396_03260 PF02798 Glutathione S-transferase, N-terminal domain HQ396_03270 PF13508 Acetyltransferase (GNAT) domain HQ396_03275 PF08007 Cupin superfamily protein HQ396_03280 PF08328 Adenylosuccinate lyase C-terminal HQ396_03280 PF00206 Lyase HQ396_03285 PF04356 Protein of unknown function (DUF489) HQ396_03295 PF00293 NUDIX domain HQ396_03300 PF00849 RNA pseudouridylate synthase HQ396_03310 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ396_03310 PF02378 Phosphotransferase system, EIIC HQ396_03310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ396_03315 PF07690 Major Facilitator Superfamily HQ396_03325 PF09013 YopH, N-terminal HQ396_03330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ396_03330 PF02378 Phosphotransferase system, EIIC HQ396_03330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ396_03340 PF00583 Acetyltransferase (GNAT) family HQ396_03350 PF13411 MerR HTH family regulatory protein HQ396_03355 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_03355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ396_03360 PF00356 Bacterial regulatory proteins, lacI family HQ396_03360 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ396_03365 PF00367 phosphotransferase system, EIIB HQ396_03365 PF02378 Phosphotransferase system, EIIC HQ396_03410 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ396_03420 PF00291 Pyridoxal-phosphate dependent enzyme HQ396_03425 PF02447 GntP family permease HQ396_03430 PF03466 LysR substrate binding domain HQ396_03430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_03450 PF01668 SmpB protein HQ396_03455 PF03364 Polyketide cyclase / dehydrase and lipid transport HQ396_03460 PF03658 RnfH family Ubiquitin HQ396_03470 PF04355 SmpA / OmlA family HQ396_03480 PF01048 Phosphorylase superfamily HQ396_03485 PF00849 RNA pseudouridylate synthase HQ396_03490 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ396_03505 PF07509 Protein of unknown function (DUF1523) HQ396_03510 PF00672 HAMP domain HQ396_03510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_03515 PF01810 LysE type translocator HQ396_03525 PF00999 Sodium/hydrogen exchanger family HQ396_03525 PF03471 Transporter associated domain HQ396_03525 PF02080 TrkA-C domain HQ396_03535 PF03471 Transporter associated domain HQ396_03535 PF00999 Sodium/hydrogen exchanger family HQ396_03535 PF02080 TrkA-C domain HQ396_03545 PF02557 D-alanyl-D-alanine carboxypeptidase HQ396_03550 PF07687 Peptidase dimerisation domain HQ396_03550 PF01546 Peptidase family M20/M25/M40 HQ396_03555 PF03960 ArsC family HQ396_03560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_03560 PF03466 LysR substrate binding domain HQ396_03570 PF03606 C4-dicarboxylate anaerobic carrier HQ396_03575 PF01546 Peptidase family M20/M25/M40 HQ396_03575 PF07687 Peptidase dimerisation domain HQ396_03585 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ396_03590 PF00152 tRNA synthetases class II (D, K and N) HQ396_03590 PF01336 OB-fold nucleic acid binding domain HQ396_03610 PF06968 Biotin and Thiamin Synthesis associated domain HQ396_03610 PF04055 Radical SAM superfamily HQ396_03615 PF00155 Aminotransferase class I and II HQ396_03620 PF12697 Alpha/beta hydrolase family HQ396_03620 PF08241 Methyltransferase domain HQ396_03640 PF03476 MOSC N-terminal beta barrel domain HQ396_03640 PF03473 MOSC domain HQ396_03640 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ396_03640 PF03473 MOSC domain HQ396_03640 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ396_03640 PF03476 MOSC N-terminal beta barrel domain HQ396_03645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ396_03645 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ396_03645 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_03650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ396_03650 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ396_03650 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ396_03650 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ396_03650 PF10371 Domain of unknown function HQ396_03695 PF00291 Pyridoxal-phosphate dependent enzyme HQ396_03705 PF00465 Iron-containing alcohol dehydrogenase HQ396_03720 PF00171 Aldehyde dehydrogenase family HQ396_03730 PF00877 NlpC/P60 family HQ396_03735 PF12563 Hemolytic toxin N terminal HQ396_03735 PF07968 Leukocidin/Hemolysin toxin family HQ396_03740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_03740 PF03466 LysR substrate binding domain HQ396_03745 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ396_03745 PF00578 AhpC/TSA family HQ396_03765 PF08003 Protein of unknown function (DUF1698) HQ396_03770 PF13649 Methyltransferase domain HQ396_03775 PF01904 Protein of unknown function DUF72 HQ396_03780 PF01336 OB-fold nucleic acid binding domain HQ396_03780 PF02938 GAD domain HQ396_03780 PF00152 tRNA synthetases class II (D, K and N) HQ396_03785 PF01709 Transcriptional regulator HQ396_03795 PF01047 MarR family HQ396_03795 PF00480 ROK family HQ396_03800 PF01979 Amidohydrolase family HQ396_03805 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HQ396_03810 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ396_03810 PF00367 phosphotransferase system, EIIB HQ396_03810 PF02378 Phosphotransferase system, EIIC HQ396_03815 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ396_03815 PF00367 phosphotransferase system, EIIB HQ396_03815 PF02378 Phosphotransferase system, EIIC HQ396_03825 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ396_03825 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HQ396_03830 PF01475 Ferric uptake regulator family HQ396_03840 PF00258 Flavodoxin HQ396_03845 PF01402 Ribbon-helix-helix protein, copG family HQ396_03855 PF12697 Alpha/beta hydrolase family HQ396_03860 PF03925 SeqA protein C-terminal domain HQ396_03860 PF17206 SeqA protein N-terminal domain HQ396_03865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ396_03865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ396_03865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ396_03865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ396_03875 PF01047 MarR family HQ396_03885 PF01066 CDP-alcohol phosphatidyltransferase HQ396_03900 PF13416 Bacterial extracellular solute-binding protein HQ396_03905 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ396_03905 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_03905 PF00403 Heavy-metal-associated domain HQ396_03910 PF02627 Carboxymuconolactone decarboxylase family HQ396_03920 PF01625 Peptide methionine sulfoxide reductase HQ396_03925 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ396_03935 PF07244 Surface antigen variable number repeat HQ396_03935 PF17243 POTRA domain TamA domain 1 HQ396_03935 PF01103 Surface antigen HQ396_03960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ396_03965 PF03707 Bacterial signalling protein N terminal repeat HQ396_03965 PF00990 Diguanylate cyclase, GGDEF domain HQ396_03965 PF00563 EAL domain HQ396_03970 PF14718 Soluble lytic murein transglycosylase L domain HQ396_03970 PF01464 Transglycosylase SLT domain HQ396_03985 PF03061 Thioesterase superfamily HQ396_03995 PF03372 Endonuclease/Exonuclease/phosphatase family HQ396_04000 PF03372 Endonuclease/Exonuclease/phosphatase family HQ396_04005 PF01464 Transglycosylase SLT domain HQ396_04005 PF01476 LysM domain HQ396_04010 PF16123 Hydroxyacylglutathione hydrolase C-terminus HQ396_04010 PF00753 Metallo-beta-lactamase superfamily HQ396_04020 PF00075 RNase H HQ396_04025 PF00929 Exonuclease HQ396_04035 PF11849 Domain of unknown function (DUF3369) HQ396_04045 PF13580 SIS domain HQ396_04050 PF13230 Glutamine amidotransferases class-II HQ396_04070 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ396_04070 PF00512 His Kinase A (phospho-acceptor) domain HQ396_04070 PF00072 Response regulator receiver domain HQ396_04070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_04080 PF00196 Bacterial regulatory proteins, luxR family HQ396_04080 PF00072 Response regulator receiver domain HQ396_04090 PF04055 Radical SAM superfamily HQ396_04090 PF06463 Molybdenum Cofactor Synthesis C HQ396_04095 PF12800 4Fe-4S binding domain HQ396_04095 PF00037 4Fe-4S binding domain HQ396_04095 PF13187 4Fe-4S dicluster domain HQ396_04105 PF00384 Molybdopterin oxidoreductase HQ396_04105 PF01568 Molydopterin dinucleotide binding domain HQ396_04105 PF10518 TAT (twin-arginine translocation) pathway signal sequence HQ396_04105 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ396_04110 PF12800 4Fe-4S binding domain HQ396_04110 PF12838 4Fe-4S dicluster domain HQ396_04115 PF13237 4Fe-4S dicluster domain HQ396_04115 PF12801 4Fe-4S binding domain HQ396_04120 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HQ396_04125 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ396_04130 PF00994 Probable molybdopterin binding domain HQ396_04135 PF01967 MoaC family HQ396_04140 PF02597 ThiS family HQ396_04145 PF02391 MoaE protein HQ396_04160 PF00005 ABC transporter HQ396_04160 PF03459 TOBE domain HQ396_04165 PF00561 alpha/beta hydrolase fold HQ396_04170 PF06406 StbA protein HQ396_04180 PF06291 Bor protein HQ396_04185 PF06291 Bor protein HQ396_04190 PF00899 ThiF family HQ396_04200 PF01227 GTP cyclohydrolase I HQ396_04205 PF17200 Single Cache domain 2 HQ396_04205 PF00672 HAMP domain HQ396_04205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_04220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_04220 PF03466 LysR substrate binding domain HQ396_04225 PF04264 YceI-like domain HQ396_04250 PF07687 Peptidase dimerisation domain HQ396_04250 PF01546 Peptidase family M20/M25/M40 HQ396_04260 PF17810 Arginine decarboxylase helical bundle domain HQ396_04260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ396_04260 PF17944 Arginine decarboxylase C-terminal helical extension HQ396_04275 PF00672 HAMP domain HQ396_04275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_04285 PF01042 Endoribonuclease L-PSP HQ396_04290 PF03313 Serine dehydratase alpha chain HQ396_04295 PF13309 HTH domain HQ396_04295 PF08348 YheO-like PAS domain HQ396_04300 PF00300 Histidine phosphatase superfamily (branch 1) HQ396_04315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ396_04330 PF01479 S4 domain HQ396_04330 PF00849 RNA pseudouridylate synthase HQ396_04340 PF07690 Major Facilitator Superfamily HQ396_04350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_04350 PF03466 LysR substrate binding domain HQ396_04355 PF07690 Major Facilitator Superfamily HQ396_04365 PF10689 Protein of unknown function (DUF2496) HQ396_04370 PF03061 Thioesterase superfamily HQ396_04385 PF04391 Protein of unknown function (DUF533) HQ396_04400 PF01654 Cytochrome bd terminal oxidase subunit I HQ396_04405 PF02322 Cytochrome bd terminal oxidase subunit II HQ396_04415 PF07690 Major Facilitator Superfamily HQ396_04420 PF00248 Aldo/keto reductase family HQ396_04450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ396_04450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HQ396_04455 PF00230 Major intrinsic protein HQ396_04460 PF07690 Major Facilitator Superfamily HQ396_04465 PF08220 DeoR-like helix-turn-helix domain HQ396_04465 PF00455 DeoR C terminal sensor domain HQ396_04475 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ396_04480 PF00793 DAHP synthetase I family HQ396_04485 PF01817 Chorismate mutase type II HQ396_04485 PF02153 Prephenate dehydrogenase HQ396_04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_04490 PF03466 LysR substrate binding domain HQ396_04495 PF04219 Protein of unknown function, DUF HQ396_04500 PF03974 Ecotin HQ396_04535 PF07208 Protein of unknown function (DUF1414) HQ396_04545 PF01547 Bacterial extracellular solute-binding protein HQ396_04550 PF14785 Maltose transport system permease protein MalF P2 domain HQ396_04550 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_04560 PF00005 ABC transporter HQ396_04560 PF08402 TOBE domain HQ396_04570 PF00561 alpha/beta hydrolase fold HQ396_04590 PF13181 Tetratricopeptide repeat HQ396_04590 PF01435 Peptidase family M48 HQ396_04595 PF00578 AhpC/TSA family HQ396_04600 PF03960 ArsC family HQ396_04615 PF04336 Acyl carrier protein phosphodiesterase HQ396_04620 PF01979 Amidohydrolase family HQ396_04625 PF03956 Lysine exporter LysO HQ396_04630 PF00005 ABC transporter HQ396_04640 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_04645 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_04655 PF04055 Radical SAM superfamily HQ396_04685 PF02321 Outer membrane efflux protein HQ396_04690 PF01594 AI-2E family transporter HQ396_04700 PF06832 Penicillin-Binding Protein C-terminus Family HQ396_04700 PF00912 Transglycosylase HQ396_04700 PF00905 Penicillin binding protein transpeptidase domain HQ396_04710 PF02926 THUMP domain HQ396_04710 PF02568 Thiamine biosynthesis protein (ThiI) HQ396_04720 PF03458 UPF0126 domain HQ396_04725 PF00700 Bacterial flagellin C-terminal helical region HQ396_04725 PF07196 Flagellin hook IN motif HQ396_04725 PF00669 Bacterial flagellin N-terminal helical region HQ396_04730 PF00669 Bacterial flagellin N-terminal helical region HQ396_04730 PF00700 Bacterial flagellin C-terminal helical region HQ396_04740 PF02465 Flagellar hook-associated protein 2 N-terminus HQ396_04740 PF07195 Flagellar hook-associated protein 2 C-terminus HQ396_04740 PF07196 Flagellin hook IN motif HQ396_04745 PF02561 Flagellar protein FliS HQ396_04790 PF09940 Domain of unknown function (DUF2172) HQ396_04790 PF16254 Domain of unknown function (DUF4910) HQ396_04790 PF16221 winged helix-turn-helix HQ396_04795 PF03102 NeuB family HQ396_04795 PF08666 SAF domain HQ396_04805 PF00202 Aminotransferase class-III HQ396_04820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ396_04830 PF01497 Periplasmic binding protein HQ396_04840 PF01048 Phosphorylase superfamily HQ396_04855 PF12729 Four helix bundle sensory module for signal transduction HQ396_04855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_04855 PF00672 HAMP domain HQ396_04860 PF00459 Inositol monophosphatase family HQ396_04870 PF02798 Glutathione S-transferase, N-terminal domain HQ396_04870 PF00043 Glutathione S-transferase, C-terminal domain HQ396_04885 PF05164 Cell division protein ZapA HQ396_04890 PF03695 Uncharacterised protein family (UPF0149) HQ396_04900 PF01494 FAD binding domain HQ396_04905 PF01571 Aminomethyltransferase folate-binding domain HQ396_04905 PF08669 Glycine cleavage T-protein C-terminal barrel domain HQ396_04910 PF01597 Glycine cleavage H-protein HQ396_04915 PF02347 Glycine cleavage system P-protein HQ396_04920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_04920 PF00672 HAMP domain HQ396_04920 PF12729 Four helix bundle sensory module for signal transduction HQ396_04925 PF04055 Radical SAM superfamily HQ396_04925 PF13186 Iron-sulfur cluster-binding domain HQ396_04930 PF01022 Bacterial regulatory protein, arsR family HQ396_04935 PF01758 Sodium Bile acid symporter family HQ396_04940 PF03960 ArsC family HQ396_04945 PF08241 Methyltransferase domain HQ396_04960 PF13192 Thioredoxin domain HQ396_04960 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_04965 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ396_04965 PF00578 AhpC/TSA family HQ396_04970 PF00571 CBS domain HQ396_04975 PF02547 Queuosine biosynthesis protein HQ396_04980 PF01702 Queuine tRNA-ribosyltransferase HQ396_04985 PF02699 Preprotein translocase subunit HQ396_04990 PF02355 Protein export membrane protein HQ396_04990 PF07549 SecD/SecF GG Motif HQ396_04990 PF13721 SecD export protein N-terminal TM region HQ396_04995 PF07549 SecD/SecF GG Motif HQ396_04995 PF02355 Protein export membrane protein HQ396_05005 PF07719 Tetratricopeptide repeat HQ396_05005 PF13181 Tetratricopeptide repeat HQ396_05010 PF01136 Peptidase family U32 HQ396_05015 PF01136 Peptidase family U32 HQ396_05020 PF02036 SCP-2 sterol transfer family HQ396_05030 PF00588 SpoU rRNA Methylase family HQ396_05035 PF02082 Transcriptional regulator HQ396_05040 PF00266 Aminotransferase class-V HQ396_05045 PF01592 NifU-like N terminal domain HQ396_05050 PF01521 Iron-sulphur cluster biosynthesis HQ396_05055 PF07743 HSCB C-terminal oligomerisation domain HQ396_05060 PF00012 Hsp70 protein HQ396_05065 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ396_05070 PF00883 Cytosol aminopeptidase family, catalytic domain HQ396_05070 PF12404 Peptidase HQ396_05075 PF00883 Cytosol aminopeptidase family, catalytic domain HQ396_05075 PF12404 Peptidase HQ396_05080 PF00334 Nucleoside diphosphate kinase HQ396_05085 PF04055 Radical SAM superfamily HQ396_05095 PF13464 Domain of unknown function (DUF4115) HQ396_05100 PF04551 GcpE protein HQ396_05105 PF13393 Histidyl-tRNA synthetase HQ396_05105 PF03129 Anticodon binding domain HQ396_05110 PF09976 Tetratricopeptide repeat-like domain HQ396_05115 PF13360 PQQ-like domain HQ396_05120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HQ396_05120 PF01926 50S ribosome-binding GTPase HQ396_05125 PF07191 zinc-ribbons HQ396_05130 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_05130 PF01464 Transglycosylase SLT domain HQ396_05135 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HQ396_05135 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HQ396_05135 PF02769 AIR synthase related protein, C-terminal domain HQ396_05140 PF01966 HD domain HQ396_05145 PF00072 Response regulator receiver domain HQ396_05155 PF00361 Proton-conducting membrane transporter HQ396_05160 PF00361 Proton-conducting membrane transporter HQ396_05170 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HQ396_05175 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HQ396_05180 PF12838 4Fe-4S dicluster domain HQ396_05185 PF00146 NADH dehydrogenase HQ396_05195 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ396_05195 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ396_05210 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ396_05215 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HQ396_05220 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ396_05220 PF00691 OmpA family HQ396_05225 PF01618 MotA/TolQ/ExbB proton channel family HQ396_05245 PF04536 TPM domain HQ396_05255 PF03411 Penicillin-insensitive murein endopeptidase HQ396_05265 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HQ396_05285 PF01212 Beta-eliminating lyase HQ396_05295 PF00072 Response regulator receiver domain HQ396_05300 PF03466 LysR substrate binding domain HQ396_05300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_05315 PF00881 Nitroreductase family HQ396_05340 PF03466 LysR substrate binding domain HQ396_05340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_05345 PF00925 GTP cyclohydrolase II HQ396_05350 PF02224 Cytidylate kinase HQ396_05355 PF00575 S1 RNA binding domain HQ396_05360 PF00216 Bacterial DNA-binding protein HQ396_05370 PF18073 Rubredoxin metal binding domain HQ396_05375 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ396_05390 PF06508 Queuosine biosynthesis protein QueC HQ396_05395 PF04055 Radical SAM superfamily HQ396_05400 PF12843 Putative quorum-sensing-regulated virulence factor HQ396_05410 PF00816 H-NS histone family HQ396_05420 PF00265 Thymidine kinase HQ396_05430 PF10722 Putative bacterial sensory transduction regulator HQ396_05445 PF05638 Type VI secretion system effector, Hcp HQ396_05450 PF04717 Type VI secretion system, phage-baseplate injector HQ396_05485 PF03527 RHS protein HQ396_05485 PF05593 RHS Repeat HQ396_05530 PF05638 Type VI secretion system effector, Hcp HQ396_05555 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath HQ396_05565 PF05947 Type VI secretion system, TssF HQ396_05585 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE HQ396_05595 PF17871 AAA lid domain HQ396_05595 PF10431 C-terminal, D2-small domain, of ClpB protein HQ396_05595 PF00004 ATPase family associated with various cellular activities (AAA) HQ396_05595 PF07724 AAA domain (Cdc48 subfamily) HQ396_05600 PF02954 Bacterial regulatory protein, Fis family HQ396_05600 PF00158 Sigma-54 interaction domain HQ396_05635 PF00182 Chitinase class I HQ396_05665 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HQ396_05665 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HQ396_05670 PF00313 'Cold-shock' DNA-binding domain HQ396_05675 PF02617 ATP-dependent Clp protease adaptor protein ClpS HQ396_05680 PF00004 ATPase family associated with various cellular activities (AAA) HQ396_05680 PF07724 AAA domain (Cdc48 subfamily) HQ396_05680 PF17871 AAA lid domain HQ396_05680 PF02861 Clp amino terminal domain, pathogenicity island component HQ396_05680 PF10431 C-terminal, D2-small domain, of ClpB protein HQ396_05685 PF01176 Translation initiation factor 1A / IF-1 HQ396_05690 PF04377 Arginine-tRNA-protein transferase, C terminus HQ396_05690 PF04376 Arginine-tRNA-protein transferase, N terminus HQ396_05695 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HQ396_05700 PF05433 Glycine zipper 2TM domain HQ396_05705 PF00990 Diguanylate cyclase, GGDEF domain HQ396_05705 PF17158 Membrane-associated sensor, integral membrane domain HQ396_05710 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_05715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ396_05715 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ396_05720 PF01037 Lrp/AsnC ligand binding domain HQ396_05725 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HQ396_05725 PF17854 FtsK alpha domain HQ396_05725 PF09397 Ftsk gamma domain HQ396_05725 PF01580 FtsK/SpoIIIE family HQ396_05730 PF03548 Outer membrane lipoprotein carrier protein LolA HQ396_05735 PF00004 ATPase family associated with various cellular activities (AAA) HQ396_05735 PF16193 AAA C-terminal domain HQ396_05735 PF12002 MgsA AAA+ ATPase C terminal HQ396_05740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ396_05740 PF02403 Seryl-tRNA synthetase N-terminal domain HQ396_05745 PF02674 Colicin V production protein HQ396_05750 PF00156 Phosphoribosyl transferase domain HQ396_05755 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HQ396_05760 PF00005 ABC transporter HQ396_05765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ396_05765 PF00005 ABC transporter HQ396_05770 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_05770 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ396_05775 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_05780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_05790 PF04012 PspA/IM30 family HQ396_05795 PF06667 Phage shock protein B HQ396_05805 PF04317 YcjX-like family, DUF463 HQ396_05810 PF05128 Domain of unknown function (DUF697) HQ396_05830 PF00158 Sigma-54 interaction domain HQ396_05830 PF18024 Helix-turn-helix domain HQ396_05835 PF13689 YfiR/HmsC-like HQ396_05840 PF00990 Diguanylate cyclase, GGDEF domain HQ396_05840 PF17152 Periplasmic sensor domain HQ396_05845 PF00691 OmpA family HQ396_05850 PF03741 Integral membrane protein TerC family HQ396_05860 PF08891 YfcL protein HQ396_05865 PF00501 AMP-binding enzyme HQ396_05870 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ396_05870 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HQ396_05880 PF03788 LrgA family HQ396_05915 PF14502 Helix-turn-helix domain HQ396_05915 PF14503 YhfZ C-terminal domain HQ396_05925 PF02126 Phosphotriesterase family HQ396_05930 PF10941 Protein of unknown function DUF2620 HQ396_05940 PF01168 Alanine racemase, N-terminal domain HQ396_05945 PF01676 Metalloenzyme superfamily HQ396_05955 PF11762 L-arabinose isomerase C-terminal domain HQ396_05955 PF02610 L-arabinose isomerase HQ396_05960 PF00596 Class II Aldolase and Adducin N-terminal domain HQ396_05970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ396_05975 PF00005 ABC transporter HQ396_05985 PF02311 AraC-like ligand binding domain HQ396_05985 PF12833 Helix-turn-helix domain HQ396_05990 PF03466 LysR substrate binding domain HQ396_05990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_05995 PF02678 Pirin HQ396_05995 PF05726 Pirin C-terminal cupin domain HQ396_06000 PF00444 Ribosomal protein L36 HQ396_06005 PF01197 Ribosomal protein L31 HQ396_06020 PF01863 Protein of unknown function DUF45 HQ396_06035 PF03606 C4-dicarboxylate anaerobic carrier HQ396_06045 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HQ396_06045 PF01266 FAD dependent oxidoreductase HQ396_06050 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ396_06050 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ396_06065 PF00285 Citrate synthase, C-terminal domain HQ396_06075 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ396_06080 PF02910 Fumarate reductase flavoprotein C-term HQ396_06080 PF00890 FAD binding domain HQ396_06085 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ396_06090 PF16078 2-oxoglutarate dehydrogenase N-terminus HQ396_06090 PF00676 Dehydrogenase E1 component HQ396_06090 PF16870 2-oxoglutarate dehydrogenase C-terminal HQ396_06090 PF02779 Transketolase, pyrimidine binding domain HQ396_06095 PF00364 Biotin-requiring enzyme HQ396_06095 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ396_06095 PF02817 e3 binding domain HQ396_06100 PF08442 ATP-grasp domain HQ396_06100 PF00549 CoA-ligase HQ396_06105 PF00549 CoA-ligase HQ396_06105 PF02629 CoA binding domain HQ396_06120 PF03692 Putative zinc- or iron-chelating domain HQ396_06130 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_06135 PF00005 ABC transporter HQ396_06145 PF00392 Bacterial regulatory proteins, gntR family HQ396_06145 PF07702 UTRA domain HQ396_06150 PF00266 Aminotransferase class-V HQ396_06155 PF00202 Aminotransferase class-III HQ396_06165 PF02901 Pyruvate formate lyase-like HQ396_06165 PF01228 Glycine radical HQ396_06170 PF01226 Formate/nitrite transporter HQ396_06175 PF18381 YcaO cyclodehydratase C-terminal domain HQ396_06175 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HQ396_06180 PF00893 Small Multidrug Resistance protein HQ396_06185 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ396_06185 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ396_06190 PF00675 Insulinase (Peptidase family M16) HQ396_06190 PF05193 Peptidase M16 inactive domain HQ396_06195 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ396_06205 PF13460 NAD(P)H-binding HQ396_06210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_06210 PF03466 LysR substrate binding domain HQ396_06215 PF00106 short chain dehydrogenase HQ396_06220 PF12833 Helix-turn-helix domain HQ396_06225 PF00593 TonB dependent receptor HQ396_06225 PF07715 TonB-dependent Receptor Plug Domain HQ396_06235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_06235 PF03466 LysR substrate binding domain HQ396_06240 PF01717 Cobalamin-independent synthase, Catalytic domain HQ396_06240 PF08267 Cobalamin-independent synthase, N-terminal domain HQ396_06250 PF00478 IMP dehydrogenase / GMP reductase domain HQ396_06250 PF00571 CBS domain HQ396_06255 PF07969 Amidohydrolase family HQ396_06265 PF01266 FAD dependent oxidoreductase HQ396_06270 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HQ396_06280 PF01212 Beta-eliminating lyase HQ396_06285 PF00768 D-alanyl-D-alanine carboxypeptidase HQ396_06290 PF00293 NUDIX domain HQ396_06320 PF13435 Cytochrome c554 and c-prime HQ396_06320 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ396_06330 PF02754 Cysteine-rich domain HQ396_06330 PF13183 4Fe-4S dicluster domain HQ396_06340 PF01266 FAD dependent oxidoreductase HQ396_06340 PF04324 BFD-like [2Fe-2S] binding domain HQ396_06345 PF02810 SEC-C motif HQ396_06350 PF00672 HAMP domain HQ396_06350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_06350 PF17200 Single Cache domain 2 HQ396_06355 PF01047 MarR family HQ396_06355 PF00480 ROK family HQ396_06360 PF00989 PAS fold HQ396_06360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_06360 PF17203 Single cache domain 3 HQ396_06360 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HQ396_06365 PF12431 Transcriptional regulator HQ396_06365 PF08279 HTH domain HQ396_06365 PF00072 Response regulator receiver domain HQ396_06370 PF01970 Tripartite tricarboxylate transporter TctA family HQ396_06385 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_06385 PF01464 Transglycosylase SLT domain HQ396_06390 PF06826 Predicted Permease Membrane Region HQ396_06390 PF02080 TrkA-C domain HQ396_06400 PF00271 Helicase conserved C-terminal domain HQ396_06400 PF17757 UvrB interaction domain HQ396_06400 PF12344 Ultra-violet resistance protein B HQ396_06400 PF04851 Type III restriction enzyme, res subunit HQ396_06400 PF02151 UvrB/uvrC motif HQ396_06410 PF09335 SNARE associated Golgi protein HQ396_06415 PF02600 Disulfide bond formation protein DsbB HQ396_06420 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HQ396_06425 PF07840 FadR C-terminal domain HQ396_06425 PF00392 Bacterial regulatory proteins, gntR family HQ396_06430 PF04293 SpoVR like protein HQ396_06435 PF04285 Protein of unknown function (DUF444) HQ396_06440 PF08298 PrkA AAA domain HQ396_06440 PF06798 PrkA serine protein kinase C-terminal domain HQ396_06445 PF16124 RecQ zinc-binding HQ396_06445 PF00570 HRDC domain HQ396_06445 PF00270 DEAD/DEAH box helicase HQ396_06445 PF00271 Helicase conserved C-terminal domain HQ396_06445 PF09382 RQC domain HQ396_06450 PF00375 Sodium:dicarboxylate symporter family HQ396_06455 PF03222 Tryptophan/tyrosine permease family HQ396_06460 PF00293 NUDIX domain HQ396_06465 PF00425 chorismate binding enzyme HQ396_06465 PF04715 Anthranilate synthase component I, N terminal region HQ396_06485 PF00343 Carbohydrate phosphorylase HQ396_06490 PF00939 Sodium:sulfate symporter transmembrane region HQ396_06495 PF00085 Thioredoxin HQ396_06505 PF00005 ABC transporter HQ396_06505 PF00664 ABC transporter transmembrane region HQ396_06530 PF01575 MaoC like domain HQ396_06535 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HQ396_06535 PF00561 alpha/beta hydrolase fold HQ396_06560 PF03992 Antibiotic biosynthesis monooxygenase HQ396_06565 PF00465 Iron-containing alcohol dehydrogenase HQ396_06570 PF00583 Acetyltransferase (GNAT) family HQ396_06585 PF01928 CYTH domain HQ396_06595 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HQ396_06605 PF13673 Acetyltransferase (GNAT) domain HQ396_06610 PF00270 DEAD/DEAH box helicase HQ396_06610 PF00271 Helicase conserved C-terminal domain HQ396_06615 PF00255 Glutathione peroxidase HQ396_06625 PF07478 D-ala D-ala ligase C-terminus HQ396_06625 PF01820 D-ala D-ala ligase N-terminus HQ396_06630 PF18029 Glyoxalase-like domain HQ396_06630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ396_06635 PF03942 DTW domain HQ396_06640 PF01925 Sulfite exporter TauE/SafE HQ396_06645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_06645 PF03466 LysR substrate binding domain HQ396_06655 PF14525 AraC-binding-like domain HQ396_06655 PF12833 Helix-turn-helix domain HQ396_06715 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ396_06715 PF00883 Cytosol aminopeptidase family, catalytic domain HQ396_06720 PF13419 Haloacid dehalogenase-like hydrolase HQ396_06735 PF00121 Triosephosphate isomerase HQ396_06740 PF02698 DUF218 domain HQ396_06745 PF13847 Methyltransferase domain HQ396_06750 PF17193 MukF C-terminal domain HQ396_06750 PF17192 MukF middle domain HQ396_06750 PF03882 MukF winged-helix domain HQ396_06755 PF04288 MukE-like family HQ396_06760 PF04310 MukB N-terminal HQ396_06760 PF16330 MukB hinge domain HQ396_06765 PF03330 Lytic transglycolase HQ396_06765 PF05036 Sporulation related domain HQ396_06780 PF01327 Polypeptide deformylase HQ396_06810 PF02567 Phenazine biosynthesis-like protein HQ396_06820 PF08274 PhnA Zinc-Ribbon HQ396_06820 PF03831 PhnA domain HQ396_06830 PF08329 Chitinase A, N-terminal domain HQ396_06830 PF00704 Glycosyl hydrolases family 18 HQ396_06845 PF00300 Histidine phosphatase superfamily (branch 1) HQ396_06860 PF01713 Smr domain HQ396_06865 PF05175 Methyltransferase small domain HQ396_06870 PF01264 Chorismate synthase HQ396_06880 PF00270 DEAD/DEAH box helicase HQ396_06880 PF00271 Helicase conserved C-terminal domain HQ396_06895 PF03222 Tryptophan/tyrosine permease family HQ396_06900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ396_06900 PF00356 Bacterial regulatory proteins, lacI family HQ396_06905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ396_06905 PF00381 PTS HPr component phosphorylation site HQ396_06910 PF00294 pfkB family carbohydrate kinase HQ396_06915 PF02378 Phosphotransferase system, EIIC HQ396_06915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ396_06920 PF06560 Glucose-6-phosphate isomerase (GPI) HQ396_06925 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ396_06925 PF00356 Bacterial regulatory proteins, lacI family HQ396_06940 PF03610 PTS system fructose IIA component HQ396_06940 PF03830 PTS system sorbose subfamily IIB component HQ396_06950 PF03613 PTS system mannose/fructose/sorbose family IID component HQ396_06960 PF06945 Protein of unknown function (DUF1289) HQ396_06965 PF03562 MltA specific insert domain HQ396_06965 PF06725 3D domain HQ396_06970 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ396_06975 PF00268 Ribonucleotide reductase, small chain HQ396_06980 PF00317 Ribonucleotide reductase, all-alpha domain HQ396_06980 PF03477 ATP cone domain HQ396_06980 PF02867 Ribonucleotide reductase, barrel domain HQ396_06985 PF13419 Haloacid dehalogenase-like hydrolase HQ396_06995 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ396_06995 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ396_07005 PF04055 Radical SAM superfamily HQ396_07015 PF03129 Anticodon binding domain HQ396_07015 PF02824 TGS domain HQ396_07015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ396_07015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ396_07020 PF00707 Translation initiation factor IF-3, C-terminal domain HQ396_07020 PF05198 Translation initiation factor IF-3, N-terminal domain HQ396_07025 PF01632 Ribosomal protein L35 HQ396_07035 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HQ396_07035 PF01409 tRNA synthetases class II core domain (F) HQ396_07045 PF00216 Bacterial DNA-binding protein HQ396_07065 PF02146 Sir2 family HQ396_07085 PF00294 pfkB family carbohydrate kinase HQ396_07090 PF13407 Periplasmic binding protein domain HQ396_07095 PF02653 Branched-chain amino acid transport system / permease component HQ396_07100 PF00005 ABC transporter HQ396_07105 PF05025 RbsD / FucU transport protein family HQ396_07110 PF13417 Glutathione S-transferase, N-terminal domain HQ396_07125 PF01171 PP-loop family HQ396_07130 PF00582 Universal stress protein family HQ396_07135 PF00027 Cyclic nucleotide-binding domain HQ396_07135 PF13545 Crp-like helix-turn-helix domain HQ396_07150 PF00403 Heavy-metal-associated domain HQ396_07160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ396_07160 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HQ396_07175 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ396_07185 PF13185 GAF domain HQ396_07190 PF04352 ProQ/FINO family HQ396_07190 PF17516 ProQ C-terminal domain HQ396_07195 PF11818 C-terminal domain of tail specific protease (DUF3340) HQ396_07195 PF00595 PDZ domain HQ396_07195 PF03572 Peptidase family S41 HQ396_07195 PF17804 Tail specific protease N-terminal domain HQ396_07200 PF11940 Domain of unknown function (DUF3458) Ig-like fold HQ396_07200 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HQ396_07200 PF01433 Peptidase family M1 domain HQ396_07215 PF01180 Dihydroorotate dehydrogenase HQ396_07220 PF07126 Cell-division protein ZapC HQ396_07225 PF02926 THUMP domain HQ396_07225 PF01170 Putative RNA methylase family UPF0020 HQ396_07225 PF10672 S-adenosylmethionine-dependent methyltransferase HQ396_07235 PF00005 ABC transporter HQ396_07235 PF16326 ABC transporter C-terminal domain HQ396_07235 PF12848 ABC transporter HQ396_07245 PF04957 Ribosome modulation factor HQ396_07255 PF13654 AAA domain HQ396_07255 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ396_07295 PF10734 Protein of unknown function (DUF2523) HQ396_07300 PF05707 Zonular occludens toxin (Zot) HQ396_07320 PF07130 YebG protein HQ396_07330 PF00106 short chain dehydrogenase HQ396_07355 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HQ396_07355 PF06974 Protein of unknown function (DUF1298) HQ396_07370 PF03972 MmgE/PrpD family HQ396_07400 PF01189 16S rRNA methyltransferase RsmB/F HQ396_07400 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HQ396_07400 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HQ396_07410 PF00589 Phage integrase family HQ396_07420 PF09115 DNA polymerase III, delta subunit, C terminal HQ396_07425 PF02223 Thymidylate kinase HQ396_07435 PF01063 Amino-transferase class IV HQ396_07440 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ396_07440 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ396_07445 PF00550 Phosphopantetheine attachment site HQ396_07455 PF00698 Acyl transferase domain HQ396_07460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ396_07460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ396_07465 PF02504 Fatty acid synthesis protein HQ396_07470 PF01783 Ribosomal L32p protein family HQ396_07475 PF02620 Large ribosomal RNA subunit accumulation protein YceD HQ396_07490 PF07690 Major Facilitator Superfamily HQ396_07495 PF02545 Maf-like protein HQ396_07505 PF00849 RNA pseudouridylate synthase HQ396_07505 PF01479 S4 domain HQ396_07510 PF12111 Polyribonucleotide phosphorylase C terminal HQ396_07510 PF10150 Ribonuclease E/G family HQ396_07510 PF00575 S1 RNA binding domain HQ396_07515 PF01384 Phosphate transporter family HQ396_07520 PF00692 dUTPase HQ396_07525 PF00485 Phosphoribulokinase / Uridine kinase family HQ396_07530 PF10609 NUBPL iron-transfer P-loop NTPase HQ396_07535 PF01588 Putative tRNA binding domain HQ396_07535 PF09334 tRNA synthetases class I (M) HQ396_07535 PF08264 Anticodon-binding domain of tRNA HQ396_07540 PF00043 Glutathione S-transferase, C-terminal domain HQ396_07540 PF02798 Glutathione S-transferase, N-terminal domain HQ396_07545 PF00708 Acylphosphatase HQ396_07550 PF12729 Four helix bundle sensory module for signal transduction HQ396_07550 PF00672 HAMP domain HQ396_07550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_07555 PF17785 PUA-like domain HQ396_07555 PF10672 S-adenosylmethionine-dependent methyltransferase HQ396_07570 PF02769 AIR synthase related protein, C-terminal domain HQ396_07570 PF00586 AIR synthase related protein, N-terminal domain HQ396_07580 PF00753 Metallo-beta-lactamase superfamily HQ396_07585 PF00072 Response regulator receiver domain HQ396_07595 PF01386 Ribosomal L25p family HQ396_07605 PF00270 DEAD/DEAH box helicase HQ396_07605 PF11898 Domain of unknown function (DUF3418) HQ396_07605 PF04408 Helicase associated domain (HA2) HQ396_07605 PF00271 Helicase conserved C-terminal domain HQ396_07605 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HQ396_07610 PF00571 CBS domain HQ396_07610 PF01368 DHH family HQ396_07610 PF02272 DHHA1 domain HQ396_07610 PF01743 Poly A polymerase head domain HQ396_07615 PF00196 Bacterial regulatory proteins, luxR family HQ396_07615 PF00072 Response regulator receiver domain HQ396_07630 PF02575 YbaB/EbfC DNA-binding family HQ396_07635 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HQ396_07635 PF12170 DNA polymerase III tau subunit V interacting with alpha HQ396_07635 PF12169 DNA polymerase III subunits gamma and tau domain III HQ396_07640 PF00156 Phosphoribosyl transferase domain HQ396_07645 PF04304 Protein of unknown function (DUF454) HQ396_07650 PF01207 Dihydrouridine synthase (Dus) HQ396_07660 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_07665 PF01612 3'-5' exonuclease HQ396_07665 PF00570 HRDC domain HQ396_07675 PF12697 Alpha/beta hydrolase family HQ396_07675 PF08241 Methyltransferase domain HQ396_07685 PF00814 Glycoprotease family HQ396_07700 PF08029 HisG, C-terminal domain HQ396_07700 PF01634 ATP phosphoribosyltransferase HQ396_07710 PF00155 Aminotransferase class I and II HQ396_07720 PF00117 Glutamine amidotransferase class-I HQ396_07730 PF00072 Response regulator receiver domain HQ396_07735 PF00990 Diguanylate cyclase, GGDEF domain HQ396_07735 PF08448 PAS fold HQ396_07740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_07740 PF00512 His Kinase A (phospho-acceptor) domain HQ396_07740 PF01627 Hpt domain HQ396_07740 PF00072 Response regulator receiver domain HQ396_07745 PF00977 Histidine biosynthesis protein HQ396_07750 PF01502 Phosphoribosyl-AMP cyclohydrolase HQ396_07750 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HQ396_07765 PF03606 C4-dicarboxylate anaerobic carrier HQ396_07775 PF05433 Glycine zipper 2TM domain HQ396_07785 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ396_07785 PF01799 [2Fe-2S] binding domain HQ396_07790 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ396_07790 PF03450 CO dehydrogenase flavoprotein C-terminal domain HQ396_07795 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ396_07795 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ396_07800 PF00860 Permease family HQ396_07805 PF01979 Amidohydrolase family HQ396_07810 PF00860 Permease family HQ396_07820 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ396_07825 PF01979 Amidohydrolase family HQ396_07830 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ396_07830 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_07845 PF02625 XdhC and CoxI family HQ396_07845 PF13478 XdhC Rossmann domain HQ396_07850 PF00892 EamA-like transporter family HQ396_07855 PF00696 Amino acid kinase family HQ396_07860 PF01979 Amidohydrolase family HQ396_07865 PF01546 Peptidase family M20/M25/M40 HQ396_07865 PF07687 Peptidase dimerisation domain HQ396_07870 PF00291 Pyridoxal-phosphate dependent enzyme HQ396_07875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ396_07875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ396_07880 PF00158 Sigma-54 interaction domain HQ396_07880 PF13188 PAS domain HQ396_07880 PF02954 Bacterial regulatory protein, Fis family HQ396_07890 PF13614 AAA domain HQ396_07930 PF07152 YaeQ protein HQ396_07940 PF00378 Enoyl-CoA hydratase/isomerase HQ396_07940 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ396_07940 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ396_07945 PF00108 Thiolase, N-terminal domain HQ396_07945 PF02803 Thiolase, C-terminal domain HQ396_07950 PF07726 ATPase family associated with various cellular activities (AAA) HQ396_07950 PF17863 AAA lid domain HQ396_07955 PF01882 Protein of unknown function DUF58 HQ396_07980 PF04542 Sigma-70 region 2 HQ396_07980 PF08281 Sigma-70, region 4 HQ396_07990 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ396_07995 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ396_08000 PF00563 EAL domain HQ396_08000 PF08668 HDOD domain HQ396_08005 PF02803 Thiolase, C-terminal domain HQ396_08005 PF00108 Thiolase, N-terminal domain HQ396_08010 PF00376 MerR family regulatory protein HQ396_08010 PF09278 MerR, DNA binding HQ396_08015 PF00375 Sodium:dicarboxylate symporter family HQ396_08020 PF06865 Pyrimidine/purine nucleoside phosphorylase HQ396_08030 PF03313 Serine dehydratase alpha chain HQ396_08030 PF03315 Serine dehydratase beta chain HQ396_08035 PF13406 Transglycosylase SLT domain HQ396_08040 PF05166 YcgL domain HQ396_08045 PF03775 Septum formation inhibitor MinC, C-terminal domain HQ396_08045 PF05209 Septum formation inhibitor MinC, N-terminal domain HQ396_08050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HQ396_08055 PF03776 Septum formation topological specificity factor MinE HQ396_08060 PF04269 Protein of unknown function, DUF440 HQ396_08065 PF00912 Transglycosylase HQ396_08080 PF17783 CvfB-like winged helix domain HQ396_08080 PF13509 S1 domain HQ396_08105 PF02525 Flavodoxin-like fold HQ396_08115 PF01370 NAD dependent epimerase/dehydratase family HQ396_08115 PF02222 ATP-grasp domain HQ396_08120 PF13419 Haloacid dehalogenase-like hydrolase HQ396_08135 PF06786 Uncharacterised protein family (UPF0253) HQ396_08140 PF01554 MatE HQ396_08180 PF17151 Periplasmic sensor domain HQ396_08180 PF00990 Diguanylate cyclase, GGDEF domain HQ396_08195 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ396_08200 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ396_08210 PF03466 LysR substrate binding domain HQ396_08210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_08215 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ396_08215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ396_08220 PF01261 Xylose isomerase-like TIM barrel HQ396_08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_08225 PF03466 LysR substrate binding domain HQ396_08235 PF01966 HD domain HQ396_08255 PF03466 LysR substrate binding domain HQ396_08255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_08260 PF00990 Diguanylate cyclase, GGDEF domain HQ396_08260 PF07694 5TMR of 5TMR-LYT HQ396_08275 PF00248 Aldo/keto reductase family HQ396_08280 PF03466 LysR substrate binding domain HQ396_08280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_08290 PF01925 Sulfite exporter TauE/SafE HQ396_08295 PF13520 Amino acid permease HQ396_08305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ396_08305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ396_08310 PF00378 Enoyl-CoA hydratase/isomerase HQ396_08320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ396_08320 PF02770 Acyl-CoA dehydrogenase, middle domain HQ396_08320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ396_08325 PF00171 Aldehyde dehydrogenase family HQ396_08340 PF00378 Enoyl-CoA hydratase/isomerase HQ396_08345 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ396_08345 PF00364 Biotin-requiring enzyme HQ396_08345 PF00289 Biotin carboxylase, N-terminal domain HQ396_08345 PF02785 Biotin carboxylase C-terminal domain HQ396_08350 PF00682 HMGL-like HQ396_08355 PF00376 MerR family regulatory protein HQ396_08355 PF09278 MerR, DNA binding HQ396_08370 PF01184 GPR1/FUN34/yaaH family HQ396_08375 PF06167 Glucose-regulated metallo-peptidase M90 HQ396_08385 PF01235 Sodium:alanine symporter family HQ396_08435 PF04341 Protein of unknown function, DUF485 HQ396_08440 PF00474 Sodium:solute symporter family HQ396_08445 PF12848 ABC transporter HQ396_08445 PF00005 ABC transporter HQ396_08450 PF13145 PPIC-type PPIASE domain HQ396_08455 PF00216 Bacterial DNA-binding protein HQ396_08460 PF00004 ATPase family associated with various cellular activities (AAA) HQ396_08460 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ396_08460 PF02190 ATP-dependent protease La (LON) substrate-binding domain HQ396_08470 PF00574 Clp protease HQ396_08475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ396_08475 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ396_08475 PF05697 Bacterial trigger factor protein (TF) HQ396_08490 PF02687 FtsX-like permease family HQ396_08490 PF12704 MacB-like periplasmic core domain HQ396_08495 PF00005 ABC transporter HQ396_08500 PF12704 MacB-like periplasmic core domain HQ396_08500 PF02687 FtsX-like permease family HQ396_08515 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HQ396_08525 PF00892 EamA-like transporter family HQ396_08535 PF00300 Histidine phosphatase superfamily (branch 1) HQ396_08540 PF00675 Insulinase (Peptidase family M16) HQ396_08540 PF05193 Peptidase M16 inactive domain HQ396_08545 PF05724 Thiopurine S-methyltransferase (TPMT) HQ396_08560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ396_08560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ396_08560 PF02805 Metal binding domain of Ada HQ396_08560 PF12833 Helix-turn-helix domain HQ396_08575 PF00117 Glutamine amidotransferase class-I HQ396_08575 PF00958 GMP synthase C terminal domain HQ396_08575 PF02540 NAD synthase HQ396_08580 PF00571 CBS domain HQ396_08580 PF00478 IMP dehydrogenase / GMP reductase domain HQ396_08585 PF02705 K+ potassium transporter HQ396_08595 PF01618 MotA/TolQ/ExbB proton channel family HQ396_08600 PF02472 Biopolymer transport protein ExbD/TolR HQ396_08605 PF00892 EamA-like transporter family HQ396_08610 PF02601 Exonuclease VII, large subunit HQ396_08610 PF13742 OB-fold nucleic acid binding domain HQ396_08620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_08620 PF00672 HAMP domain HQ396_08625 PF00793 DAHP synthetase I family HQ396_08630 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ396_08635 PF00266 Aminotransferase class-V HQ396_08660 PF11143 Protein of unknown function (DUF2919) HQ396_08680 PF01032 FecCD transport family HQ396_08685 PF01032 FecCD transport family HQ396_08690 PF00005 ABC transporter HQ396_08700 PF01497 Periplasmic binding protein HQ396_08705 PF00975 Thioesterase domain HQ396_08705 PF00550 Phosphopantetheine attachment site HQ396_08705 PF00501 AMP-binding enzyme HQ396_08705 PF00668 Condensation domain HQ396_08705 PF13193 AMP-binding enzyme C-terminal domain HQ396_08725 PF00550 Phosphopantetheine attachment site HQ396_08725 PF00857 Isochorismatase family HQ396_08735 PF00425 chorismate binding enzyme HQ396_08740 PF07273 Protein of unknown function (DUF1439) HQ396_08750 PF00483 Nucleotidyl transferase HQ396_08755 PF00563 EAL domain HQ396_08755 PF00990 Diguanylate cyclase, GGDEF domain HQ396_08755 PF03707 Bacterial signalling protein N terminal repeat HQ396_08780 PF00762 Ferrochelatase HQ396_08785 PF05191 Adenylate kinase, active site lid HQ396_08790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_08790 PF00183 Hsp90 protein HQ396_08795 PF02132 RecR protein HQ396_08795 PF13662 Toprim domain HQ396_08800 PF02634 FdhD/NarQ family HQ396_08805 PF02954 Bacterial regulatory protein, Fis family HQ396_08805 PF01590 GAF domain HQ396_08805 PF00158 Sigma-54 interaction domain HQ396_08820 PF13247 4Fe-4S dicluster domain HQ396_08820 PF12800 4Fe-4S binding domain HQ396_08825 PF14461 Prokaryotic E2 family B HQ396_08825 PF00899 ThiF family HQ396_08830 PF00899 ThiF family HQ396_08840 PF02705 K+ potassium transporter HQ396_08845 PF12798 4Fe-4S binding domain HQ396_08845 PF00037 4Fe-4S binding domain HQ396_08850 PF00361 Proton-conducting membrane transporter HQ396_08855 PF00146 NADH dehydrogenase HQ396_08860 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ396_08860 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ396_08860 PF00374 Nickel-dependent hydrogenase HQ396_08865 PF12838 4Fe-4S dicluster domain HQ396_08870 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ396_08875 PF07450 Formate hydrogenlyase maturation protein HycH HQ396_08880 PF01750 Hydrogenase maturation protease HQ396_08890 PF12390 Selenocysteine synthase N terminal HQ396_08890 PF03841 L-seryl-tRNA selenium transferase HQ396_08900 PF17788 HypF Kae1-like domain HQ396_08900 PF01300 Telomere recombination HQ396_08900 PF07503 HypF finger HQ396_08900 PF00708 Acylphosphatase HQ396_08905 PF01455 HupF/HypC family HQ396_08915 PF02769 AIR synthase related protein, C-terminal domain HQ396_08915 PF00586 AIR synthase related protein, N-terminal domain HQ396_08920 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HQ396_08925 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ396_08930 PF08402 TOBE domain HQ396_08930 PF00005 ABC transporter HQ396_08935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ396_08935 PF00005 ABC transporter HQ396_08940 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_08940 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ396_08945 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_08950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_08960 PF01750 Hydrogenase maturation protease HQ396_08970 PF03916 Polysulphide reductase, NrfD HQ396_08975 PF13247 4Fe-4S dicluster domain HQ396_08980 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HQ396_08980 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ396_08985 PF00158 Sigma-54 interaction domain HQ396_08985 PF00072 Response regulator receiver domain HQ396_08985 PF02954 Bacterial regulatory protein, Fis family HQ396_08995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_08995 PF01627 Hpt domain HQ396_08995 PF09078 CheY binding HQ396_08995 PF01584 CheW-like domain HQ396_08995 PF02895 Signal transducing histidine kinase, homodimeric domain HQ396_09000 PF00672 HAMP domain HQ396_09000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_09000 PF17202 Single cache domain 3 HQ396_09005 PF01584 CheW-like domain HQ396_09010 PF03705 CheR methyltransferase, all-alpha domain HQ396_09010 PF01739 CheR methyltransferase, SAM binding domain HQ396_09015 PF01339 CheB methylesterase HQ396_09015 PF00072 Response regulator receiver domain HQ396_09025 PF12729 Four helix bundle sensory module for signal transduction HQ396_09025 PF00672 HAMP domain HQ396_09025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_09125 PF13356 Arm DNA-binding domain HQ396_09125 PF00589 Phage integrase family HQ396_09125 PF14659 Phage integrase, N-terminal SAM-like domain HQ396_09195 PF03239 Iron permease FTR1 family HQ396_09215 PF07690 Major Facilitator Superfamily HQ396_09225 PF00005 ABC transporter HQ396_09230 PF02687 FtsX-like permease family HQ396_09230 PF12704 MacB-like periplasmic core domain HQ396_09255 PF02913 FAD linked oxidases, C-terminal domain HQ396_09255 PF01565 FAD binding domain HQ396_09265 PF02589 LUD domain HQ396_09265 PF13183 4Fe-4S dicluster domain HQ396_09265 PF11870 Domain of unknown function (DUF3390) HQ396_09270 PF02754 Cysteine-rich domain HQ396_09275 PF02652 L-lactate permease HQ396_09280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_09280 PF03466 LysR substrate binding domain HQ396_09290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ396_09295 PF00561 alpha/beta hydrolase fold HQ396_09315 PF01625 Peptide methionine sulfoxide reductase HQ396_09320 PF00696 Amino acid kinase family HQ396_09320 PF00583 Acetyltransferase (GNAT) family HQ396_09325 PF00696 Amino acid kinase family HQ396_09325 PF01842 ACT domain HQ396_09340 PF17676 LD-carboxypeptidase C-terminal domain HQ396_09340 PF02016 LD-carboxypeptidase N-terminal domain HQ396_09345 PF01734 Patatin-like phospholipase HQ396_09350 PF17179 4Fe-4S dicluster domain HQ396_09355 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HQ396_09355 PF00175 Oxidoreductase NAD-binding domain HQ396_09360 PF13187 4Fe-4S dicluster domain HQ396_09360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ396_09360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ396_09365 PF10414 Sirohaem synthase dimerisation region HQ396_09365 PF14824 Sirohaem biosynthesis protein central HQ396_09365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ396_09375 PF01906 Putative heavy-metal-binding HQ396_09395 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_09400 PF05728 Uncharacterised protein family (UPF0227) HQ396_09405 PF00860 Permease family HQ396_09410 PF01432 Peptidase family M3 HQ396_09410 PF08439 Oligopeptidase F HQ396_09420 PF05661 Protein of unknown function (DUF808) HQ396_09430 PF07549 SecD/SecF GG Motif HQ396_09430 PF02355 Protein export membrane protein HQ396_09435 PF13721 SecD export protein N-terminal TM region HQ396_09435 PF07549 SecD/SecF GG Motif HQ396_09435 PF02355 Protein export membrane protein HQ396_09470 PF01230 HIT domain HQ396_09475 PF00672 HAMP domain HQ396_09475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_09500 PF00375 Sodium:dicarboxylate symporter family HQ396_09510 PF01168 Alanine racemase, N-terminal domain HQ396_09510 PF00842 Alanine racemase, C-terminal domain HQ396_09515 PF03741 Integral membrane protein TerC family HQ396_09520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ396_09520 PF00005 ABC transporter HQ396_09525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ396_09525 PF00005 ABC transporter HQ396_09530 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ396_09530 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_09535 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_09540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_09545 PF01914 MarC family integral membrane protein HQ396_09565 PF07694 5TMR of 5TMR-LYT HQ396_09565 PF06580 Histidine kinase HQ396_09570 PF00072 Response regulator receiver domain HQ396_09570 PF04397 LytTr DNA-binding domain HQ396_09575 PF02554 Carbon starvation protein CstA HQ396_09580 PF11742 Protein of unknown function (DUF3302) HQ396_09585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_09585 PF00529 HlyD membrane-fusion protein of T1SS HQ396_09590 PF00271 Helicase conserved C-terminal domain HQ396_09590 PF04851 Type III restriction enzyme, res subunit HQ396_09595 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HQ396_09600 PF00462 Glutaredoxin HQ396_09610 PF00155 Aminotransferase class I and II HQ396_09615 PF03606 C4-dicarboxylate anaerobic carrier HQ396_09620 PF07055 Enoyl reductase FAD binding domain HQ396_09620 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ396_09620 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ396_09625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_09625 PF08447 PAS fold HQ396_09625 PF13426 PAS domain HQ396_09635 PF00892 EamA-like transporter family HQ396_09640 PF02508 Rnf-Nqr subunit, membrane protein HQ396_09645 PF04060 Putative Fe-S cluster HQ396_09650 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ396_09650 PF12838 4Fe-4S dicluster domain HQ396_09650 PF10531 SLBB domain HQ396_09650 PF13375 RnfC Barrel sandwich hybrid domain HQ396_09660 PF04205 FMN-binding domain HQ396_09665 PF02508 Rnf-Nqr subunit, membrane protein HQ396_09670 PF10576 Iron-sulfur binding domain of endonuclease III HQ396_09670 PF00633 Helix-hairpin-helix motif HQ396_09670 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ396_09675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ396_09680 PF00691 OmpA family HQ396_09680 PF18393 MotY N-terminal domain HQ396_09685 PF12729 Four helix bundle sensory module for signal transduction HQ396_09685 PF00672 HAMP domain HQ396_09685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_09690 PF00929 Exonuclease HQ396_09700 PF03880 DbpA RNA binding domain HQ396_09700 PF00270 DEAD/DEAH box helicase HQ396_09700 PF00271 Helicase conserved C-terminal domain HQ396_09705 PF03061 Thioesterase superfamily HQ396_09725 PF03741 Integral membrane protein TerC family HQ396_09725 PF03471 Transporter associated domain HQ396_09735 PF00962 Adenosine/AMP deaminase HQ396_09770 PF00043 Glutathione S-transferase, C-terminal domain HQ396_09770 PF13417 Glutathione S-transferase, N-terminal domain HQ396_09775 PF02798 Glutathione S-transferase, N-terminal domain HQ396_09775 PF14497 Glutathione S-transferase, C-terminal domain HQ396_09785 PF04209 homogentisate 1,2-dioxygenase HQ396_09800 PF00849 RNA pseudouridylate synthase HQ396_09805 PF13185 GAF domain HQ396_09805 PF00990 Diguanylate cyclase, GGDEF domain HQ396_09810 PF08447 PAS fold HQ396_09810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_09820 PF03706 Lysylphosphatidylglycerol synthase TM region HQ396_09820 PF09924 Uncharacterised conserved protein (DUF2156) HQ396_09830 PF08019 Phosphoethanolamine transferase EptA/EptB HQ396_09830 PF00884 Sulfatase HQ396_09855 PF01514 Secretory protein of YscJ/FliF family HQ396_09860 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI HQ396_09865 PF09025 YopR, type III needle-polymerisation regulator HQ396_09870 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) HQ396_09875 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HQ396_09885 PF16697 Inner membrane component of T3SS, cytoplasmic domain HQ396_09885 PF16693 Inner membrane component of T3SS, periplasmic domain HQ396_09890 PF00263 Bacterial type II and III secretion system protein HQ396_09890 PF03958 Bacterial type II/III secretion system short domain HQ396_09900 PF16806 Antiactivator protein ExsD HQ396_09905 PF12833 Helix-turn-helix domain HQ396_09920 PF05932 Tir chaperone protein (CesT) family HQ396_09935 PF04888 Secretion system effector C (SseC) like family HQ396_09940 PF07720 Tetratricopeptide repeat HQ396_09945 PF04792 V antigen (LcrV) protein HQ396_09960 PF09621 Type III secretion system regulator (LcrR) HQ396_09965 PF00771 FHIPEP family HQ396_09975 PF09474 Type III secretion system YscX (type_III_YscX) HQ396_09985 PF09059 TyeA HQ396_09990 PF07201 HrpJ-like domain HQ396_09995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ396_09995 PF18269 T3SS EscN ATPase C-terminal domain HQ396_09995 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ396_10010 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ396_10015 PF00813 FliP family HQ396_10020 PF01313 Bacterial export proteins, family 3 HQ396_10030 PF01312 FlhB HrpN YscU SpaS Family HQ396_10045 PF01027 Inhibitor of apoptosis-promoting Bax1 HQ396_10050 PF12805 FUSC-like inner membrane protein yccS HQ396_10055 PF04358 DsrC like protein HQ396_10060 PF05036 Sporulation related domain HQ396_10065 PF08245 Mur ligase middle domain HQ396_10065 PF02875 Mur ligase family, glutamate ligase domain HQ396_10070 PF17848 Acetyl-coA carboxylase zinc finger domain HQ396_10070 PF01039 Carboxyl transferase domain HQ396_10075 PF01416 tRNA pseudouridine synthase HQ396_10085 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ396_10085 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ396_10090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ396_10090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ396_10090 PF11890 Domain of unknown function (DUF3410) HQ396_10095 PF01569 PAP2 superfamily HQ396_10115 PF01292 Prokaryotic cytochrome b561 HQ396_10130 PF01483 Proprotein convertase P-domain HQ396_10130 PF00082 Subtilase family HQ396_10140 PF14310 Fibronectin type III-like domain HQ396_10140 PF00933 Glycosyl hydrolase family 3 N terminal domain HQ396_10140 PF01915 Glycosyl hydrolase family 3 C-terminal domain HQ396_10150 PF00391 PEP-utilising enzyme, mobile domain HQ396_10150 PF02896 PEP-utilising enzyme, TIM barrel domain HQ396_10150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ396_10155 PF03618 Kinase/pyrophosphorylase HQ396_10165 PF00324 Amino acid permease HQ396_10185 PF00092 von Willebrand factor type A domain HQ396_10240 PF16199 Radical_SAM C-terminal domain HQ396_10240 PF04055 Radical SAM superfamily HQ396_10245 PF04898 Glutamate synthase central domain HQ396_10245 PF01493 GXGXG motif HQ396_10245 PF01645 Conserved region in glutamate synthase HQ396_10245 PF00310 Glutamine amidotransferases class-II HQ396_10250 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ396_10250 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_10260 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_10265 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_10280 PF09278 MerR, DNA binding HQ396_10280 PF00376 MerR family regulatory protein HQ396_10295 PF14521 Lysine-specific metallo-endopeptidase HQ396_10305 PF00270 DEAD/DEAH box helicase HQ396_10305 PF00271 Helicase conserved C-terminal domain HQ396_10310 PF13302 Acetyltransferase (GNAT) domain HQ396_10330 PF08378 Nuclease-related domain HQ396_10345 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ396_10345 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HQ396_10345 PF02142 MGS-like domain HQ396_10350 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HQ396_10350 PF00117 Glutamine amidotransferase class-I HQ396_10355 PF01113 Dihydrodipicolinate reductase, N-terminus HQ396_10355 PF05173 Dihydrodipicolinate reductase, C-terminus HQ396_10365 PF01812 5-formyltetrahydrofolate cyclo-ligase family HQ396_10370 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HQ396_10375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ396_10375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ396_10375 PF01842 ACT domain HQ396_10380 PF01219 Prokaryotic diacylglycerol kinase HQ396_10385 PF00793 DAHP synthetase I family HQ396_10390 PF00583 Acetyltransferase (GNAT) family HQ396_10400 PF01032 FecCD transport family HQ396_10405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_10405 PF00512 His Kinase A (phospho-acceptor) domain HQ396_10405 PF01627 Hpt domain HQ396_10405 PF00989 PAS fold HQ396_10405 PF00072 Response regulator receiver domain HQ396_10405 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_10415 PF00437 Type II/IV secretion system protein HQ396_10420 PF00483 Nucleotidyl transferase HQ396_10435 PF07670 Nucleoside recognition HQ396_10435 PF02421 Ferrous iron transport protein B HQ396_10435 PF07664 Ferrous iron transport protein B C terminus HQ396_10445 PF01253 Translation initiation factor SUI1 HQ396_10450 PF01169 Uncharacterized protein family UPF0016 HQ396_10480 PF13185 GAF domain HQ396_10480 PF00990 Diguanylate cyclase, GGDEF domain HQ396_10505 PF09190 DALR domain HQ396_10505 PF01406 tRNA synthetases class I (C) catalytic domain HQ396_10510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ396_10520 PF00149 Calcineurin-like phosphoesterase HQ396_10530 PF00037 4Fe-4S binding domain HQ396_10530 PF13247 4Fe-4S dicluster domain HQ396_10550 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ396_10555 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HQ396_10560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_10560 PF00672 HAMP domain HQ396_10565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_10565 PF08447 PAS fold HQ396_10565 PF13426 PAS domain HQ396_10600 PF01066 CDP-alcohol phosphatidyltransferase HQ396_10605 PF08459 UvrC Helix-hairpin-helix N-terminal HQ396_10605 PF01541 GIY-YIG catalytic domain HQ396_10605 PF02151 UvrB/uvrC motif HQ396_10610 PF00072 Response regulator receiver domain HQ396_10610 PF00196 Bacterial regulatory proteins, luxR family HQ396_10615 PF02348 Cytidylyltransferase HQ396_10620 PF03966 Trm112p-like protein HQ396_10625 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HQ396_10630 PF00664 ABC transporter transmembrane region HQ396_10630 PF00005 ABC transporter HQ396_10635 PF03772 Competence protein HQ396_10635 PF00753 Metallo-beta-lactamase superfamily HQ396_10650 PF05872 Bacterial protein of unknown function (DUF853) HQ396_10655 PF00155 Aminotransferase class I and II HQ396_10665 PF13609 Gram-negative porin HQ396_10670 PF13307 Helicase C-terminal domain HQ396_10670 PF06733 DEAD_2 HQ396_10680 PF00850 Histone deacetylase domain HQ396_10685 PF07690 Major Facilitator Superfamily HQ396_10715 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ396_10715 PF14760 Rnk N-terminus HQ396_10720 PF00196 Bacterial regulatory proteins, luxR family HQ396_10720 PF00072 Response regulator receiver domain HQ396_10730 PF07690 Major Facilitator Superfamily HQ396_10740 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_10750 PF00005 ABC transporter HQ396_10765 PF04116 Fatty acid hydroxylase superfamily HQ396_10775 PF02310 B12 binding domain HQ396_10775 PF02607 B12 binding domain HQ396_10775 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ396_10775 PF00809 Pterin binding enzyme HQ396_10775 PF02574 Homocysteine S-methyltransferase HQ396_10785 PF03471 Transporter associated domain HQ396_10785 PF01595 Cyclin M transmembrane N-terminal domain HQ396_10785 PF00571 CBS domain HQ396_10790 PF01895 PhoU domain HQ396_10795 PF00005 ABC transporter HQ396_10800 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_10805 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_10810 PF14437 MafB19-like deaminase HQ396_10825 PF01274 Malate synthase HQ396_10830 PF00463 Isocitrate lyase family HQ396_10835 PF00308 Bacterial dnaA protein HQ396_10850 PF02769 AIR synthase related protein, C-terminal domain HQ396_10850 PF00586 AIR synthase related protein, N-terminal domain HQ396_10855 PF00551 Formyl transferase HQ396_10860 PF01784 NIF3 (NGG1p interacting factor 3) HQ396_10865 PF02954 Bacterial regulatory protein, Fis family HQ396_10865 PF00158 Sigma-54 interaction domain HQ396_10865 PF00072 Response regulator receiver domain HQ396_10870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_10870 PF13188 PAS domain HQ396_10870 PF00512 His Kinase A (phospho-acceptor) domain HQ396_10875 PF06490 Flagellar regulatory protein FleQ HQ396_10875 PF02954 Bacterial regulatory protein, Fis family HQ396_10875 PF00158 Sigma-54 interaction domain HQ396_10885 PF01842 ACT domain HQ396_10890 PF02503 Polyphosphate kinase middle domain HQ396_10890 PF13090 Polyphosphate kinase C-terminal domain 2 HQ396_10890 PF17941 Polyphosphate kinase C-terminal domain 1 HQ396_10890 PF13089 Polyphosphate kinase N-terminal domain HQ396_10895 PF02541 Ppx/GppA phosphatase family HQ396_10900 PF01769 Divalent cation transporter HQ396_10900 PF00571 CBS domain HQ396_10900 PF03448 MgtE intracellular N domain HQ396_10920 PF02119 Flagellar P-ring protein HQ396_10925 PF02107 Flagellar L-ring protein HQ396_10930 PF00460 Flagella basal body rod protein HQ396_10930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ396_10935 PF00460 Flagella basal body rod protein HQ396_10935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ396_10945 PF07559 Flagellar basal body protein FlaE HQ396_10945 PF00460 Flagella basal body rod protein HQ396_10945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ396_10955 PF00460 Flagella basal body rod protein HQ396_10955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ396_10960 PF00460 Flagella basal body rod protein HQ396_10970 PF00072 Response regulator receiver domain HQ396_10970 PF01584 CheW-like domain HQ396_10975 PF13144 Chaperone for flagella basal body P-ring formation HQ396_10990 PF12850 Calcineurin-like phosphoesterase superfamily domain HQ396_10995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_11005 PF01479 S4 domain HQ396_11005 PF00849 RNA pseudouridylate synthase HQ396_11010 PF11871 Domain of unknown function (DUF3391) HQ396_11010 PF01966 HD domain HQ396_11020 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ396_11025 PF04055 Radical SAM superfamily HQ396_11030 PF01228 Glycine radical HQ396_11030 PF02901 Pyruvate formate lyase-like HQ396_11035 PF00455 DeoR C terminal sensor domain HQ396_11035 PF08220 DeoR-like helix-turn-helix domain HQ396_11040 PF00892 EamA-like transporter family HQ396_11045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_11070 PF00313 'Cold-shock' DNA-binding domain HQ396_11075 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ396_11075 PF00364 Biotin-requiring enzyme HQ396_11075 PF02817 e3 binding domain HQ396_11080 PF02779 Transketolase, pyrimidine binding domain HQ396_11080 PF02780 Transketolase, C-terminal domain HQ396_11100 PF05472 DNA replication terminus site-binding protein (Ter protein) HQ396_11145 PF02719 Polysaccharide biosynthesis protein HQ396_11150 PF00953 Glycosyl transferase family 4 HQ396_11155 PF01370 NAD dependent epimerase/dehydratase family HQ396_11165 PF01757 Acyltransferase family HQ396_11175 PF00005 ABC transporter HQ396_11230 PF07963 Prokaryotic N-terminal methylation motif HQ396_11235 PF07963 Prokaryotic N-terminal methylation motif HQ396_11235 PF08334 Type II secretion system (T2SS), protein G HQ396_11240 PF00482 Type II secretion system (T2SS), protein F HQ396_11245 PF00437 Type II/IV secretion system protein HQ396_11245 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ396_11255 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HQ396_11260 PF00483 Nucleotidyl transferase HQ396_11265 PF04321 RmlD substrate binding domain HQ396_11270 PF16363 GDP-mannose 4,6 dehydratase HQ396_11280 PF00873 AcrB/AcrD/AcrF family HQ396_11285 PF00529 HlyD membrane-fusion protein of T1SS HQ396_11285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_11290 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ396_11290 PF00440 Bacterial regulatory proteins, tetR family HQ396_11310 PF00849 RNA pseudouridylate synthase HQ396_11310 PF01479 S4 domain HQ396_11315 PF04079 Segregation and condensation complex subunit ScpB HQ396_11320 PF02616 Segregation and condensation protein ScpA HQ396_11325 PF01300 Telomere recombination HQ396_11335 PF04715 Anthranilate synthase component I, N terminal region HQ396_11335 PF00425 chorismate binding enzyme HQ396_11340 PF00591 Glycosyl transferase family, a/b domain HQ396_11340 PF02885 Glycosyl transferase family, helical bundle domain HQ396_11340 PF00117 Glutamine amidotransferase class-I HQ396_11345 PF02885 Glycosyl transferase family, helical bundle domain HQ396_11345 PF00591 Glycosyl transferase family, a/b domain HQ396_11350 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HQ396_11350 PF00218 Indole-3-glycerol phosphate synthase HQ396_11355 PF00291 Pyridoxal-phosphate dependent enzyme HQ396_11360 PF00290 Tryptophan synthase alpha chain HQ396_11385 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ396_11415 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HQ396_11430 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HQ396_11445 PF01040 UbiA prenyltransferase family HQ396_11450 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HQ396_11455 PF00510 Cytochrome c oxidase subunit III HQ396_11460 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ396_11465 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HQ396_11465 PF06481 COX Aromatic Rich Motif HQ396_11475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ396_11475 PF00034 Cytochrome c HQ396_11485 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ396_11500 PF00127 Copper binding proteins, plastocyanin/azurin family HQ396_11510 PF07690 Major Facilitator Superfamily HQ396_11525 PF03372 Endonuclease/Exonuclease/phosphatase family HQ396_11530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_11570 PF10437 Bacterial lipoate protein ligase C-terminus HQ396_11570 PF03099 Biotin/lipoate A/B protein ligase family HQ396_11575 PF00990 Diguanylate cyclase, GGDEF domain HQ396_11575 PF00563 EAL domain HQ396_11575 PF03707 Bacterial signalling protein N terminal repeat HQ396_11595 PF04143 Sulphur transport HQ396_11600 PF01022 Bacterial regulatory protein, arsR family HQ396_11615 PF02308 MgtC family HQ396_11620 PF00356 Bacterial regulatory proteins, lacI family HQ396_11620 PF13407 Periplasmic binding protein domain HQ396_11625 PF08244 Glycosyl hydrolases family 32 C terminal HQ396_11625 PF00251 Glycosyl hydrolases family 32 N-terminal domain HQ396_11630 PF02378 Phosphotransferase system, EIIC HQ396_11630 PF00367 phosphotransferase system, EIIB HQ396_11645 PF01556 DnaJ C terminal domain HQ396_11645 PF00684 DnaJ central domain HQ396_11645 PF00226 DnaJ domain HQ396_11650 PF00012 Hsp70 protein HQ396_11655 PF01025 GrpE HQ396_11660 PF01513 ATP-NAD kinase HQ396_11680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_11685 PF00005 ABC transporter HQ396_11685 PF02687 FtsX-like permease family HQ396_11685 PF12704 MacB-like periplasmic core domain HQ396_11690 PF02321 Outer membrane efflux protein HQ396_11700 PF00793 DAHP synthetase I family HQ396_11705 PF00816 H-NS histone family HQ396_11740 PF07883 Cupin domain HQ396_11740 PF01381 Helix-turn-helix HQ396_11745 PF00171 Aldehyde dehydrogenase family HQ396_11755 PF00324 Amino acid permease HQ396_11765 PF13520 Amino acid permease HQ396_11775 PF02690 Na+/Pi-cotransporter HQ396_11780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ396_11780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ396_11785 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HQ396_11790 PF01627 Hpt domain HQ396_11790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_11790 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_11790 PF00072 Response regulator receiver domain HQ396_11790 PF00512 His Kinase A (phospho-acceptor) domain HQ396_11790 PF00989 PAS fold HQ396_11805 PF01048 Phosphorylase superfamily HQ396_11815 PF01797 Transposase IS200 like HQ396_11835 PF00291 Pyridoxal-phosphate dependent enzyme HQ396_11835 PF14821 Threonine synthase N terminus HQ396_11840 PF08544 GHMP kinases C terminal HQ396_11840 PF00288 GHMP kinases N terminal domain HQ396_11845 PF00742 Homoserine dehydrogenase HQ396_11845 PF01842 ACT domain HQ396_11845 PF00696 Amino acid kinase family HQ396_11845 PF03447 Homoserine dehydrogenase, NAD binding domain HQ396_11845 PF13840 ACT domain HQ396_11850 PF00588 SpoU rRNA Methylase family HQ396_11855 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HQ396_11870 PF03737 Aldolase/RraA HQ396_11880 PF00072 Response regulator receiver domain HQ396_11880 PF00486 Transcriptional regulatory protein, C terminal HQ396_11895 PF00005 ABC transporter HQ396_11895 PF00664 ABC transporter transmembrane region HQ396_11925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ396_11925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ396_11935 PF10431 C-terminal, D2-small domain, of ClpB protein HQ396_11935 PF02861 Clp amino terminal domain, pathogenicity island component HQ396_11935 PF17871 AAA lid domain HQ396_11935 PF07724 AAA domain (Cdc48 subfamily) HQ396_11935 PF00004 ATPase family associated with various cellular activities (AAA) HQ396_11940 PF00291 Pyridoxal-phosphate dependent enzyme HQ396_11945 PF00381 PTS HPr component phosphorylation site HQ396_11950 PF02896 PEP-utilising enzyme, TIM barrel domain HQ396_11950 PF05524 PEP-utilising enzyme, N-terminal HQ396_11950 PF00391 PEP-utilising enzyme, mobile domain HQ396_11955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ396_11960 PF00990 Diguanylate cyclase, GGDEF domain HQ396_11970 PF01292 Prokaryotic cytochrome b561 HQ396_11985 PF13476 AAA domain HQ396_11990 PF12320 Type 5 capsule protein repressor C-terminal domain HQ396_11990 PF00149 Calcineurin-like phosphoesterase HQ396_12000 PF04381 Putative exonuclease, RdgC HQ396_12010 PF02254 TrkA-N domain HQ396_12010 PF00999 Sodium/hydrogen exchanger family HQ396_12015 PF04389 Peptidase family M28 HQ396_12015 PF04151 Bacterial pre-peptidase C-terminal domain HQ396_12025 PF00224 Pyruvate kinase, barrel domain HQ396_12025 PF02887 Pyruvate kinase, alpha/beta domain HQ396_12040 PF10282 Lactonase, 7-bladed beta-propeller HQ396_12050 PF00390 Malic enzyme, N-terminal domain HQ396_12050 PF03949 Malic enzyme, NAD binding domain HQ396_12055 PF00072 Response regulator receiver domain HQ396_12065 PF13247 4Fe-4S dicluster domain HQ396_12100 PF01381 Helix-turn-helix HQ396_12110 PF01555 DNA methylase HQ396_12115 PF02634 FdhD/NarQ family HQ396_12125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_12125 PF00512 His Kinase A (phospho-acceptor) domain HQ396_12125 PF00989 PAS fold HQ396_12130 PF02954 Bacterial regulatory protein, Fis family HQ396_12130 PF00072 Response regulator receiver domain HQ396_12130 PF00158 Sigma-54 interaction domain HQ396_12135 PF12849 PBP superfamily domain HQ396_12140 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_12145 PF00005 ABC transporter HQ396_12150 PF12804 MobA-like NTP transferase domain HQ396_12160 PF04632 Fusaric acid resistance protein family HQ396_12195 PF05114 Protein of unknown function (DUF692) HQ396_12205 PF10725 Protein of unknown function (DUF2517) HQ396_12230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_12235 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_12240 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ396_12240 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_12245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ396_12245 PF00005 ABC transporter HQ396_12260 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ396_12270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_12270 PF08447 PAS fold HQ396_12285 PF01396 Topoisomerase DNA binding C4 zinc finger HQ396_12285 PF01751 Toprim domain HQ396_12285 PF08272 Topoisomerase I zinc-ribbon-like HQ396_12285 PF01131 DNA topoisomerase HQ396_12290 PF04996 Succinylarginine dihydrolase HQ396_12295 PF01343 Peptidase family S49 HQ396_12295 PF08496 Peptidase family S49 N-terminal HQ396_12300 PF00106 short chain dehydrogenase HQ396_12305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_12305 PF03466 LysR substrate binding domain HQ396_12310 PF07690 Major Facilitator Superfamily HQ396_12315 PF00155 Aminotransferase class I and II HQ396_12325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_12325 PF03466 LysR substrate binding domain HQ396_12330 PF00709 Adenylosuccinate synthetase HQ396_12380 PF00456 Transketolase, thiamine diphosphate binding domain HQ396_12380 PF02780 Transketolase, C-terminal domain HQ396_12380 PF02779 Transketolase, pyrimidine binding domain HQ396_12385 PF02773 S-adenosylmethionine synthetase, C-terminal domain HQ396_12385 PF02772 S-adenosylmethionine synthetase, central domain HQ396_12385 PF00438 S-adenosylmethionine synthetase, N-terminal domain HQ396_12390 PF17283 SprT-like zinc ribbon domain HQ396_12390 PF10263 SprT-like family HQ396_12395 PF04231 Endonuclease I HQ396_12400 PF04452 RNA methyltransferase HQ396_12405 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HQ396_12405 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HQ396_12415 PF02622 Uncharacterized ACR, COG1678 HQ396_12420 PF03652 Holliday junction resolvase HQ396_12425 PF00854 POT family HQ396_12430 PF00144 Beta-lactamase HQ396_12435 PF07726 ATPase family associated with various cellular activities (AAA) HQ396_12435 PF17863 AAA lid domain HQ396_12450 PF01235 Sodium:alanine symporter family HQ396_12455 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ396_12470 PF03167 Uracil DNA glycosylase superfamily HQ396_12475 PF01228 Glycine radical HQ396_12480 PF00375 Sodium:dicarboxylate symporter family HQ396_12485 PF00793 DAHP synthetase I family HQ396_12490 PF13369 Transglutaminase-like superfamily HQ396_12500 PF17827 PrmC N-terminal domain HQ396_12500 PF13847 Methyltransferase domain HQ396_12505 PF03462 PCRF domain HQ396_12505 PF00472 RF-1 domain HQ396_12510 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HQ396_12510 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HQ396_12510 PF01488 Shikimate / quinate 5-dehydrogenase HQ396_12515 PF03550 Outer membrane lipoprotein LolB HQ396_12520 PF08544 GHMP kinases C terminal HQ396_12520 PF00288 GHMP kinases N terminal domain HQ396_12530 PF14572 Phosphoribosyl synthetase-associated domain HQ396_12530 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HQ396_12535 PF02872 5'-nucleotidase, C-terminal domain HQ396_12535 PF00149 Calcineurin-like phosphoesterase HQ396_12540 PF01195 Peptidyl-tRNA hydrolase HQ396_12545 PF01926 50S ribosome-binding GTPase HQ396_12545 PF06071 Protein of unknown function (DUF933) HQ396_12590 PF03600 Citrate transporter HQ396_12590 PF02080 TrkA-C domain HQ396_12595 PF04973 Nicotinamide mononucleotide transporter HQ396_12610 PF04266 ASCH domain HQ396_12625 PF00012 Hsp70 protein HQ396_12635 PF00128 Alpha amylase, catalytic domain HQ396_12635 PF16657 Maltogenic Amylase, C-terminal domain HQ396_12645 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ396_12645 PF10371 Domain of unknown function HQ396_12645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ396_12645 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ396_12645 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ396_12655 PF13419 Haloacid dehalogenase-like hydrolase HQ396_12665 PF00171 Aldehyde dehydrogenase family HQ396_12670 PF04958 Arginine N-succinyltransferase beta subunit HQ396_12675 PF00202 Aminotransferase class-III HQ396_12680 PF00117 Glutamine amidotransferase class-I HQ396_12690 PF00579 tRNA synthetases class I (W and Y) HQ396_12695 PF13419 Haloacid dehalogenase-like hydrolase HQ396_12700 PF00834 Ribulose-phosphate 3 epimerase family HQ396_12710 PF02086 D12 class N6 adenine-specific DNA methyltransferase HQ396_12725 PF01202 Shikimate kinase HQ396_12750 PF11104 Type IV pilus assembly protein PilM; HQ396_12755 PF17092 Penicillin-binding protein OB-like domain HQ396_12755 PF00912 Transglycosylase HQ396_12755 PF00905 Penicillin binding protein transpeptidase domain HQ396_12760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_12760 PF03466 LysR substrate binding domain HQ396_12765 PF02743 Cache domain HQ396_12765 PF00672 HAMP domain HQ396_12765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_12795 PF01551 Peptidase family M23 HQ396_12795 PF08525 Opacity-associated protein A N-terminal motif HQ396_12795 PF01476 LysM domain HQ396_12810 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ396_12815 PF02743 Cache domain HQ396_12815 PF00672 HAMP domain HQ396_12815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_12820 PF00890 FAD binding domain HQ396_12820 PF02910 Fumarate reductase flavoprotein C-term HQ396_12825 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ396_12825 PF13183 4Fe-4S dicluster domain HQ396_12830 PF02300 Fumarate reductase subunit C HQ396_12835 PF02313 Fumarate reductase subunit D HQ396_12855 PF06224 Winged helix DNA-binding domain HQ396_12890 PF00072 Response regulator receiver domain HQ396_12890 PF00486 Transcriptional regulatory protein, C terminal HQ396_12895 PF00512 His Kinase A (phospho-acceptor) domain HQ396_12895 PF08521 Two-component sensor kinase N-terminal HQ396_12895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_12915 PF00478 IMP dehydrogenase / GMP reductase domain HQ396_12935 PF09997 Predicted membrane protein (DUF2238) HQ396_12945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ396_12945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ396_12955 PF00990 Diguanylate cyclase, GGDEF domain HQ396_12955 PF08448 PAS fold HQ396_12965 PF13419 Haloacid dehalogenase-like hydrolase HQ396_12975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_12975 PF03466 LysR substrate binding domain HQ396_12980 PF00990 Diguanylate cyclase, GGDEF domain HQ396_12980 PF05230 MASE2 domain HQ396_12985 PF00313 'Cold-shock' DNA-binding domain HQ396_12990 PF00857 Isochorismatase family HQ396_12995 PF01494 FAD binding domain HQ396_13000 PF01938 TRAM domain HQ396_13000 PF04055 Radical SAM superfamily HQ396_13000 PF00919 Uncharacterized protein family UPF0004 HQ396_13005 PF02562 PhoH-like protein HQ396_13010 PF02130 Uncharacterized protein family UPF0054 HQ396_13015 PF03471 Transporter associated domain HQ396_13015 PF00571 CBS domain HQ396_13020 PF00795 Carbon-nitrogen hydrolase HQ396_13025 PF07295 Zinc-ribbon containing domain HQ396_13045 PF01467 Cytidylyltransferase-like HQ396_13055 PF02590 Predicted SPOUT methyltransferase HQ396_13060 PF00905 Penicillin binding protein transpeptidase domain HQ396_13060 PF03717 Penicillin-binding Protein dimerisation domain HQ396_13065 PF01098 Cell cycle protein HQ396_13070 PF13406 Transglycosylase SLT domain HQ396_13085 PF04359 Protein of unknown function (DUF493) HQ396_13095 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HQ396_13095 PF04055 Radical SAM superfamily HQ396_13105 PF06821 Serine hydrolase HQ396_13110 PF02508 Rnf-Nqr subunit, membrane protein HQ396_13125 PF13411 MerR HTH family regulatory protein HQ396_13130 PF01368 DHH family HQ396_13130 PF02272 DHHA1 domain HQ396_13130 PF17768 RecJ OB domain HQ396_13135 PF10411 Disulfide bond isomerase protein N-terminus HQ396_13135 PF13098 Thioredoxin-like domain HQ396_13140 PF01741 Large-conductance mechanosensitive channel, MscL HQ396_13145 PF00589 Phage integrase family HQ396_13145 PF02899 Phage integrase, N-terminal SAM-like domain HQ396_13150 PF00258 Flavodoxin HQ396_13155 PF01523 Putative modulator of DNA gyrase HQ396_13160 PF01523 Putative modulator of DNA gyrase HQ396_13170 PF17969 L,D-transpeptidase C-terminal domain HQ396_13170 PF03734 L,D-transpeptidase catalytic domain HQ396_13175 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase HQ396_13205 PF03916 Polysulphide reductase, NrfD HQ396_13210 PF13247 4Fe-4S dicluster domain HQ396_13220 PF00196 Bacterial regulatory proteins, luxR family HQ396_13220 PF00072 Response regulator receiver domain HQ396_13230 PF00072 Response regulator receiver domain HQ396_13230 PF04397 LytTr DNA-binding domain HQ396_13235 PF02554 Carbon starvation protein CstA HQ396_13235 PF13722 5TM C-terminal transporter carbon starvation CstA HQ396_13245 PF03575 Peptidase family S51 HQ396_13260 PF02635 DsrE/DsrF-like family HQ396_13265 PF00563 EAL domain HQ396_13265 PF00990 Diguanylate cyclase, GGDEF domain HQ396_13265 PF03707 Bacterial signalling protein N terminal repeat HQ396_13270 PF07690 Major Facilitator Superfamily HQ396_13275 PF01138 3' exoribonuclease family, domain 1 HQ396_13275 PF03725 3' exoribonuclease family, domain 2 HQ396_13275 PF00575 S1 RNA binding domain HQ396_13275 PF00013 KH domain HQ396_13275 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HQ396_13280 PF00312 Ribosomal protein S15 HQ396_13285 PF09157 Pseudouridine synthase II TruB, C-terminal HQ396_13285 PF16198 tRNA pseudouridylate synthase B C-terminal domain HQ396_13285 PF01509 TruB family pseudouridylate synthase (N terminal domain) HQ396_13290 PF02033 Ribosome-binding factor A HQ396_13295 PF00009 Elongation factor Tu GTP binding domain HQ396_13295 PF11987 Translation-initiation factor 2 HQ396_13295 PF08364 Bacterial translation initiation factor IF-2 associated region HQ396_13295 PF04760 Translation initiation factor IF-2, N-terminal region HQ396_13300 PF13184 NusA-like KH domain HQ396_13300 PF00575 S1 RNA binding domain HQ396_13300 PF08529 NusA N-terminal domain HQ396_13305 PF02576 RimP N-terminal domain HQ396_13305 PF17384 RimP C-terminal SH3 domain HQ396_13320 PF03840 Preprotein translocase SecG subunit HQ396_13325 PF00121 Triosephosphate isomerase HQ396_13330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ396_13330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ396_13330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ396_13330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ396_13340 PF06480 FtsH Extracellular HQ396_13340 PF17862 AAA+ lid domain HQ396_13340 PF00004 ATPase family associated with various cellular activities (AAA) HQ396_13340 PF01434 Peptidase family M41 HQ396_13345 PF01728 FtsJ-like methyltransferase HQ396_13350 PF01985 CRS1 / YhbY (CRM) domain HQ396_13360 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ396_13360 PF03449 Transcription elongation factor, N-terminal HQ396_13365 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ396_13365 PF00691 OmpA family HQ396_13370 PF01618 MotA/TolQ/ExbB proton channel family HQ396_13375 PF02609 Exonuclease VII small subunit HQ396_13385 PF02780 Transketolase, C-terminal domain HQ396_13385 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HQ396_13385 PF02779 Transketolase, pyrimidine binding domain HQ396_13390 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ396_13390 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_13395 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_13400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_13405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ396_13405 PF00005 ABC transporter HQ396_13410 PF04608 Phosphatidylglycerophosphatase A HQ396_13415 PF00586 AIR synthase related protein, N-terminal domain HQ396_13415 PF02769 AIR synthase related protein, C-terminal domain HQ396_13420 PF01029 NusB family HQ396_13425 PF00885 6,7-dimethyl-8-ribityllumazine synthase HQ396_13440 PF00677 Lumazine binding domain HQ396_13445 PF01872 RibD C-terminal domain HQ396_13445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ396_13450 PF03477 ATP cone domain HQ396_13460 PF00464 Serine hydroxymethyltransferase HQ396_13475 PF02613 Nitrate reductase delta subunit HQ396_13495 PF03707 Bacterial signalling protein N terminal repeat HQ396_13495 PF00563 EAL domain HQ396_13495 PF00990 Diguanylate cyclase, GGDEF domain HQ396_13495 PF13188 PAS domain HQ396_13505 PF16177 Acetyl-coenzyme A synthetase N-terminus HQ396_13505 PF00501 AMP-binding enzyme HQ396_13505 PF13193 AMP-binding enzyme C-terminal domain HQ396_13510 PF01220 Dehydroquinase class II HQ396_13515 PF00364 Biotin-requiring enzyme HQ396_13520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ396_13520 PF00289 Biotin carboxylase, N-terminal domain HQ396_13520 PF02785 Biotin carboxylase C-terminal domain HQ396_13545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_13545 PF03466 LysR substrate binding domain HQ396_13550 PF08240 Alcohol dehydrogenase GroES-like domain HQ396_13550 PF00107 Zinc-binding dehydrogenase HQ396_13570 PF00881 Nitroreductase family HQ396_13575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ396_13575 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_13580 PF01343 Peptidase family S49 HQ396_13595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ396_13595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ396_13600 PF07023 Protein of unknown function (DUF1315) HQ396_13605 PF00710 Asparaginase, N-terminal HQ396_13605 PF17763 Glutaminase/Asparaginase C-terminal domain HQ396_13610 PF03616 Sodium/glutamate symporter HQ396_13615 PF02743 Cache domain HQ396_13615 PF00672 HAMP domain HQ396_13615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_13625 PF00152 tRNA synthetases class II (D, K and N) HQ396_13625 PF01336 OB-fold nucleic acid binding domain HQ396_13635 PF00667 FAD binding domain HQ396_13635 PF00258 Flavodoxin HQ396_13635 PF00175 Oxidoreductase NAD-binding domain HQ396_13640 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ396_13640 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ396_13645 PF01507 Phosphoadenosine phosphosulfate reductase family HQ396_13650 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HQ396_13655 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_13665 PF00186 Dihydrofolate reductase HQ396_13670 PF12821 Threonine/Serine exporter, ThrE HQ396_13675 PF06738 Putative threonine/serine exporter HQ396_13685 PF00994 Probable molybdopterin binding domain HQ396_13710 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ396_13710 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ396_13745 PF07977 FabA-like domain HQ396_13750 PF00501 AMP-binding enzyme HQ396_13750 PF13193 AMP-binding enzyme C-terminal domain HQ396_13760 PF00550 Phosphopantetheine attachment site HQ396_13765 PF00550 Phosphopantetheine attachment site HQ396_13800 PF03150 Di-haem cytochrome c peroxidase HQ396_13800 PF00034 Cytochrome c HQ396_13805 PF00194 Eukaryotic-type carbonic anhydrase HQ396_13815 PF00294 pfkB family carbohydrate kinase HQ396_13830 PF00582 Universal stress protein family HQ396_13840 PF00171 Aldehyde dehydrogenase family HQ396_13845 PF00696 Amino acid kinase family HQ396_13845 PF01472 PUA domain HQ396_13850 PF07417 Sigma factor-binding transcriptional regulator Crl HQ396_13855 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HQ396_13860 PF00156 Phosphoribosyl transferase domain HQ396_13865 PF07687 Peptidase dimerisation domain HQ396_13865 PF01546 Peptidase family M20/M25/M40 HQ396_13875 PF00005 ABC transporter HQ396_13875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ396_13890 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_13905 PF01618 MotA/TolQ/ExbB proton channel family HQ396_13910 PF01618 MotA/TolQ/ExbB proton channel family HQ396_13915 PF02472 Biopolymer transport protein ExbD/TolR HQ396_13930 PF00704 Glycosyl hydrolases family 18 HQ396_13930 PF06483 Chitinase C HQ396_13965 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ396_13970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_13970 PF00672 HAMP domain HQ396_13980 PF00313 'Cold-shock' DNA-binding domain HQ396_14020 PF00929 Exonuclease HQ396_14025 PF03193 RsgA GTPase HQ396_14030 PF02666 Phosphatidylserine decarboxylase HQ396_14035 PF09905 DNA-binding protein VF530 HQ396_14050 PF04224 Protein of unknown function, DUF417 HQ396_14055 PF02627 Carboxymuconolactone decarboxylase family HQ396_14060 PF12852 Cupin HQ396_14060 PF12833 Helix-turn-helix domain HQ396_14070 PF00990 Diguanylate cyclase, GGDEF domain HQ396_14070 PF00563 EAL domain HQ396_14070 PF03707 Bacterial signalling protein N terminal repeat HQ396_14075 PF06877 Regulator of ribonuclease activity B HQ396_14105 PF06004 Bacterial protein of unknown function (DUF903) HQ396_14110 PF00082 Subtilase family HQ396_14110 PF05922 Peptidase inhibitor I9 HQ396_14115 PF00581 Rhodanese-like domain HQ396_14120 PF04960 Glutaminase HQ396_14125 PF04320 Protein with unknown function (DUF469) HQ396_14130 PF02390 Putative methyltransferase HQ396_14135 PF01483 Proprotein convertase P-domain HQ396_14135 PF04389 Peptidase family M28 HQ396_14140 PF00155 Aminotransferase class I and II HQ396_14145 PF00563 EAL domain HQ396_14145 PF12792 CSS motif domain associated with EAL HQ396_14150 PF08338 Domain of unknown function (DUF1731) HQ396_14150 PF01370 NAD dependent epimerase/dehydratase family HQ396_14160 PF00005 ABC transporter HQ396_14165 PF13472 GDSL-like Lipase/Acylhydrolase family HQ396_14190 PF06826 Predicted Permease Membrane Region HQ396_14190 PF02080 TrkA-C domain HQ396_14205 PF04279 Intracellular septation protein A HQ396_14210 PF03795 YCII-related domain HQ396_14215 PF00459 Inositol monophosphatase family HQ396_14225 PF00483 Nucleotidyl transferase HQ396_14230 PF00854 POT family HQ396_14235 PF00072 Response regulator receiver domain HQ396_14270 PF02321 Outer membrane efflux protein HQ396_14275 PF01207 Dihydrouridine synthase (Dus) HQ396_14280 PF02954 Bacterial regulatory protein, Fis family HQ396_14285 PF01810 LysE type translocator HQ396_14310 PF01521 Iron-sulphur cluster biosynthesis HQ396_14320 PF00654 Voltage gated chloride channel HQ396_14325 PF00202 Aminotransferase class-III HQ396_14340 PF01569 PAP2 superfamily HQ396_14350 PF11849 Domain of unknown function (DUF3369) HQ396_14360 PF00893 Small Multidrug Resistance protein HQ396_14365 PF00893 Small Multidrug Resistance protein HQ396_14370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ396_14375 PF00912 Transglycosylase HQ396_14375 PF14814 Bifunctional transglycosylase second domain HQ396_14375 PF00905 Penicillin binding protein transpeptidase domain HQ396_14380 PF00270 DEAD/DEAH box helicase HQ396_14380 PF04408 Helicase associated domain (HA2) HQ396_14380 PF00271 Helicase conserved C-terminal domain HQ396_14380 PF08482 ATP-dependent helicase C-terminal HQ396_14395 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ396_14400 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ396_14405 PF12626 Polymerase A arginine-rich C-terminus HQ396_14405 PF01743 Poly A polymerase head domain HQ396_14405 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ396_14410 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ396_14415 PF02548 Ketopantoate hydroxymethyltransferase HQ396_14420 PF02569 Pantoate-beta-alanine ligase HQ396_14445 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HQ396_14450 PF01061 ABC-2 type transporter HQ396_14455 PF00005 ABC transporter HQ396_14460 PF00156 Phosphoribosyl transferase domain HQ396_14465 PF00440 Bacterial regulatory proteins, tetR family HQ396_14480 PF00719 Inorganic pyrophosphatase HQ396_14495 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HQ396_14510 PF00005 ABC transporter HQ396_14530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_14530 PF08447 PAS fold HQ396_14570 PF02080 TrkA-C domain HQ396_14570 PF03600 Citrate transporter HQ396_14575 PF00009 Elongation factor Tu GTP binding domain HQ396_14580 PF01507 Phosphoadenosine phosphosulfate reductase family HQ396_14585 PF10414 Sirohaem synthase dimerisation region HQ396_14585 PF14824 Sirohaem biosynthesis protein central HQ396_14585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ396_14590 PF01145 SPFH domain / Band 7 family HQ396_14590 PF16200 C-terminal region of band_7 HQ396_14595 PF01957 NfeD-like C-terminal, partner-binding HQ396_14600 PF00571 CBS domain HQ396_14600 PF01380 SIS domain HQ396_14605 PF00005 ABC transporter HQ396_14605 PF12848 ABC transporter HQ396_14615 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HQ396_14620 PF03466 LysR substrate binding domain HQ396_14620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_14625 PF02525 Flavodoxin-like fold HQ396_14650 PF00561 alpha/beta hydrolase fold HQ396_14655 PF00474 Sodium:solute symporter family HQ396_14660 PF17969 L,D-transpeptidase C-terminal domain HQ396_14660 PF03734 L,D-transpeptidase catalytic domain HQ396_14665 PF00924 Mechanosensitive ion channel HQ396_14670 PF00871 Acetokinase family HQ396_14675 PF04074 YhcH/YjgK/YiaL HQ396_14685 PF00394 Multicopper oxidase HQ396_14685 PF07731 Multicopper oxidase HQ396_14685 PF07732 Multicopper oxidase HQ396_14690 PF01177 Asp/Glu/Hydantoin racemase HQ396_14705 PF00155 Aminotransferase class I and II HQ396_14705 PF00392 Bacterial regulatory proteins, gntR family HQ396_14760 PF07690 Major Facilitator Superfamily HQ396_14775 PF01037 Lrp/AsnC ligand binding domain HQ396_14790 PF01047 MarR family HQ396_14795 PF02566 OsmC-like protein HQ396_14800 PF16884 N-terminal domain of oxidoreductase HQ396_14800 PF00107 Zinc-binding dehydrogenase HQ396_14805 PF00293 NUDIX domain HQ396_14815 PF01641 SelR domain HQ396_14820 PF00128 Alpha amylase, catalytic domain HQ396_14820 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ396_14825 PF00128 Alpha amylase, catalytic domain HQ396_14825 PF02806 Alpha amylase, C-terminal all-beta domain HQ396_14825 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ396_14830 PF02446 4-alpha-glucanotransferase HQ396_14835 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ396_14835 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ396_14840 PF01263 Aldose 1-epimerase HQ396_14845 PF02445 Quinolinate synthetase A protein HQ396_14925 PF13174 Tetratricopeptide repeat HQ396_14925 PF16331 TolA binding protein trimerisation HQ396_14930 PF00691 OmpA family HQ396_14935 PF07676 WD40-like Beta Propeller Repeat HQ396_14935 PF04052 TolB amino-terminal domain HQ396_14945 PF02472 Biopolymer transport protein ExbD/TolR HQ396_14950 PF01618 MotA/TolQ/ExbB proton channel family HQ396_14955 PF03061 Thioesterase superfamily HQ396_14960 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HQ396_14965 PF08173 Membrane bound YbgT-like protein HQ396_14970 PF02322 Cytochrome bd terminal oxidase subunit II HQ396_14975 PF01654 Cytochrome bd terminal oxidase subunit I HQ396_14980 PF17864 RuvB AAA lid domain HQ396_14980 PF05491 RuvB C-terminal winged helix domain HQ396_14980 PF05496 Holliday junction DNA helicase RuvB P-loop domain HQ396_14985 PF01330 RuvA N terminal domain HQ396_14985 PF07499 RuvA, C-terminal domain HQ396_14990 PF00672 HAMP domain HQ396_14990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_14995 PF03129 Anticodon binding domain HQ396_14995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ396_14995 PF04073 Aminoacyl-tRNA editing domain HQ396_15000 PF00106 short chain dehydrogenase HQ396_15015 PF00378 Enoyl-CoA hydratase/isomerase HQ396_15020 PF10952 Protein of unknown function (DUF2753) HQ396_15025 PF00132 Bacterial transferase hexapeptide (six repeats) HQ396_15035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_15050 PF02594 Uncharacterised ACR, YggU family COG1872 HQ396_15055 PF02325 YGGT family HQ396_15060 PF03807 NADP oxidoreductase coenzyme F420-dependent HQ396_15060 PF14748 Pyrroline-5-carboxylate reductase dimerisation HQ396_15065 PF01168 Alanine racemase, N-terminal domain HQ396_15070 PF00437 Type II/IV secretion system protein HQ396_15075 PF00437 Type II/IV secretion system protein HQ396_15080 PF03883 Peroxide stress protein YaaA HQ396_15085 PF00270 DEAD/DEAH box helicase HQ396_15085 PF00271 Helicase conserved C-terminal domain HQ396_15090 PF05175 Methyltransferase small domain HQ396_15095 PF05525 Branched-chain amino acid transport protein HQ396_15100 PF05525 Branched-chain amino acid transport protein HQ396_15115 PF01475 Ferric uptake regulator family HQ396_15120 PF01207 Dihydrouridine synthase (Dus) HQ396_15135 PF00216 Bacterial DNA-binding protein HQ396_15145 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HQ396_15150 PF07238 PilZ domain HQ396_15155 PF18073 Rubredoxin metal binding domain HQ396_15170 PF18429 Domain of unknown function (DUF5609) HQ396_15180 PF00563 EAL domain HQ396_15180 PF00990 Diguanylate cyclase, GGDEF domain HQ396_15180 PF05231 MASE1 HQ396_15180 PF13426 PAS domain HQ396_15180 PF08448 PAS fold HQ396_15180 PF08447 PAS fold HQ396_15185 PF01048 Phosphorylase superfamily HQ396_15190 PF01676 Metalloenzyme superfamily HQ396_15195 PF02885 Glycosyl transferase family, helical bundle domain HQ396_15195 PF00591 Glycosyl transferase family, a/b domain HQ396_15195 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HQ396_15200 PF01791 DeoC/LacD family aldolase HQ396_15210 PF01773 Na+ dependent nucleoside transporter N-terminus HQ396_15210 PF07662 Na+ dependent nucleoside transporter C-terminus HQ396_15210 PF07670 Nucleoside recognition HQ396_15220 PF07963 Prokaryotic N-terminal methylation motif HQ396_15230 PF05958 tRNA (Uracil-5-)-methyltransferase HQ396_15230 PF01938 TRAM domain HQ396_15235 PF00909 Ammonium Transporter Family HQ396_15250 PF18818 Metallopeptidase superfamily domain HQ396_15250 PF08401 Domain of unknown function (DUF1738) HQ396_15250 PF13362 Toprim domain HQ396_15300 PF00589 Phage integrase family HQ396_15300 PF13356 Arm DNA-binding domain HQ396_15315 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ396_15320 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ396_15325 PF00883 Cytosol aminopeptidase family, catalytic domain HQ396_15325 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ396_15330 PF04364 DNA polymerase III chi subunit, HolC HQ396_15335 PF08264 Anticodon-binding domain of tRNA HQ396_15335 PF10458 Valyl tRNA synthetase tRNA binding arm HQ396_15335 PF00133 tRNA synthetases class I (I, L, M and V) HQ396_15345 PF09335 SNARE associated Golgi protein HQ396_15350 PF00768 D-alanyl-D-alanine carboxypeptidase HQ396_15385 PF02599 Global regulator protein family HQ396_15390 PF13840 ACT domain HQ396_15390 PF01842 ACT domain HQ396_15390 PF00696 Amino acid kinase family HQ396_15395 PF02272 DHHA1 domain HQ396_15395 PF01411 tRNA synthetases class II (A) HQ396_15395 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ396_15400 PF02631 RecX family HQ396_15405 PF00154 recA bacterial DNA recombination protein HQ396_15410 PF02464 Competence-damaged protein HQ396_15415 PF01624 MutS domain I HQ396_15415 PF05188 MutS domain II HQ396_15415 PF05192 MutS domain III HQ396_15415 PF05190 MutS family domain IV HQ396_15415 PF00488 MutS domain V HQ396_15420 PF02028 BCCT, betaine/carnitine/choline family transporter HQ396_15435 PF04222 Protein of unknown function (DUF416) HQ396_15440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ396_15445 PF08525 Opacity-associated protein A N-terminal motif HQ396_15445 PF01476 LysM domain HQ396_15445 PF01551 Peptidase family M23 HQ396_15465 PF01297 Zinc-uptake complex component A periplasmic HQ396_15470 PF00005 ABC transporter HQ396_15475 PF00950 ABC 3 transport family HQ396_15480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_15480 PF03466 LysR substrate binding domain HQ396_15485 PF00892 EamA-like transporter family HQ396_15490 PF03167 Uracil DNA glycosylase superfamily HQ396_15495 PF00892 EamA-like transporter family HQ396_15505 PF01541 GIY-YIG catalytic domain HQ396_15520 PF04012 PspA/IM30 family HQ396_15525 PF01553 Acyltransferase HQ396_15545 PF00085 Thioredoxin HQ396_15550 PF00226 DnaJ domain HQ396_15550 PF01556 DnaJ C terminal domain HQ396_15550 PF00684 DnaJ central domain HQ396_15595 PF01751 Toprim domain HQ396_15595 PF00986 DNA gyrase B subunit, carboxyl terminus HQ396_15595 PF00204 DNA gyrase B HQ396_15595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_15605 PF00529 HlyD membrane-fusion protein of T1SS HQ396_15605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ396_15610 PF07869 Protein of unknown function (DUF1656) HQ396_15620 PF00293 NUDIX domain HQ396_15625 PF05728 Uncharacterised protein family (UPF0227) HQ396_15630 PF00149 Calcineurin-like phosphoesterase HQ396_15635 PF06853 Protein of unknown function (DUF1249) HQ396_15640 PF00293 NUDIX domain HQ396_15645 PF02321 Outer membrane efflux protein HQ396_15650 PF01467 Cytidylyltransferase-like HQ396_15650 PF00294 pfkB family carbohydrate kinase HQ396_15655 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ396_15670 PF01865 Protein of unknown function DUF47 HQ396_15675 PF01384 Phosphate transporter family HQ396_15680 PF04073 Aminoacyl-tRNA editing domain HQ396_15700 PF00155 Aminotransferase class I and II HQ396_15700 PF00392 Bacterial regulatory proteins, gntR family HQ396_15705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_15705 PF03466 LysR substrate binding domain HQ396_15710 PF03788 LrgA family HQ396_15730 PF01966 HD domain HQ396_15730 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ396_15730 PF01743 Poly A polymerase head domain HQ396_15735 PF13401 AAA domain HQ396_15735 PF01471 Putative peptidoglycan binding domain HQ396_15745 PF10576 Iron-sulfur binding domain of endonuclease III HQ396_15745 PF00633 Helix-hairpin-helix motif HQ396_15745 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ396_15745 PF14815 NUDIX domain HQ396_15750 PF04362 Bacterial Fe(2+) trafficking HQ396_15755 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HQ396_15755 PF01464 Transglycosylase SLT domain HQ396_15760 PF04076 Bacterial OB fold (BOF) protein HQ396_15765 PF00657 GDSL-like Lipase/Acylhydrolase HQ396_15775 PF00691 OmpA family HQ396_15775 PF01389 OmpA-like transmembrane domain HQ396_15780 PF03886 ABC-type transport auxiliary lipoprotein component HQ396_15790 PF04403 Paraquat-inducible protein A HQ396_15795 PF17209 Hfq protein HQ396_15800 PF13419 Haloacid dehalogenase-like hydrolase HQ396_15810 PF01590 GAF domain HQ396_15810 PF00990 Diguanylate cyclase, GGDEF domain HQ396_15810 PF00360 Phytochrome region HQ396_15810 PF00563 EAL domain HQ396_15815 PF00701 Dihydrodipicolinate synthetase family HQ396_15820 PF08468 Methyltransferase small domain N-terminal HQ396_15820 PF05175 Methyltransferase small domain HQ396_15825 PF00483 Nucleotidyl transferase HQ396_15830 PF08323 Starch synthase catalytic domain HQ396_15830 PF00534 Glycosyl transferases group 1 HQ396_15870 PF03553 Na+/H+ antiporter family HQ396_15875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_15875 PF03466 LysR substrate binding domain HQ396_15880 PF13416 Bacterial extracellular solute-binding protein HQ396_15885 PF00005 ABC transporter HQ396_15885 PF08402 TOBE domain HQ396_15890 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_15895 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_15900 PF00171 Aldehyde dehydrogenase family HQ396_15910 PF00892 EamA-like transporter family HQ396_15915 PF01037 Lrp/AsnC ligand binding domain HQ396_15920 PF12464 Maltose acetyltransferase HQ396_15920 PF14602 Hexapeptide repeat of succinyl-transferase HQ396_15925 PF11941 Domain of unknown function (DUF3459) HQ396_15925 PF00128 Alpha amylase, catalytic domain HQ396_15930 PF00367 phosphotransferase system, EIIB HQ396_15930 PF02378 Phosphotransferase system, EIIC HQ396_15950 PF00710 Asparaginase, N-terminal HQ396_15950 PF17763 Glutaminase/Asparaginase C-terminal domain HQ396_15965 PF02142 MGS-like domain HQ396_15975 PF00210 Ferritin-like domain HQ396_15990 PF17176 tRNA-binding domain HQ396_15990 PF05127 Helicase HQ396_15990 PF08351 Domain of unknown function (DUF1726) HQ396_15990 PF13718 GNAT acetyltransferase 2 HQ396_15995 PF00106 short chain dehydrogenase HQ396_16000 PF01584 CheW-like domain HQ396_16000 PF00072 Response regulator receiver domain HQ396_16045 PF02660 Glycerol-3-phosphate acyltransferase HQ396_16050 PF02152 Dihydroneopterin aldolase HQ396_16055 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ396_16065 PF07690 Major Facilitator Superfamily HQ396_16070 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ396_16070 PF07683 Cobalamin synthesis protein cobW C-terminal domain HQ396_16075 PF01565 FAD binding domain HQ396_16075 PF04030 D-arabinono-1,4-lactone oxidase HQ396_16080 PF01810 LysE type translocator HQ396_16085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_16085 PF03466 LysR substrate binding domain HQ396_16090 PF00563 EAL domain HQ396_16090 PF12792 CSS motif domain associated with EAL HQ396_16095 PF00330 Aconitase family (aconitate hydratase) HQ396_16095 PF06434 Aconitate hydratase 2 N-terminus HQ396_16095 PF11791 Aconitate B N-terminal domain HQ396_16100 PF01734 Patatin-like phospholipase HQ396_16105 PF12729 Four helix bundle sensory module for signal transduction HQ396_16105 PF00672 HAMP domain HQ396_16105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_16110 PF12729 Four helix bundle sensory module for signal transduction HQ396_16110 PF00672 HAMP domain HQ396_16110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_16120 PF00563 EAL domain HQ396_16120 PF08448 PAS fold HQ396_16120 PF08447 PAS fold HQ396_16120 PF05231 MASE1 HQ396_16120 PF13426 PAS domain HQ396_16120 PF00990 Diguanylate cyclase, GGDEF domain HQ396_16125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ396_16125 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_16130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ396_16130 PF00364 Biotin-requiring enzyme HQ396_16130 PF02817 e3 binding domain HQ396_16135 PF00456 Transketolase, thiamine diphosphate binding domain HQ396_16135 PF17831 Pyruvate dehydrogenase E1 component middle domain HQ396_16140 PF07729 FCD domain HQ396_16140 PF00392 Bacterial regulatory proteins, gntR family HQ396_16145 PF01510 N-acetylmuramoyl-L-alanine amidase HQ396_16155 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HQ396_16155 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HQ396_16160 PF07963 Prokaryotic N-terminal methylation motif HQ396_16165 PF00437 Type II/IV secretion system protein HQ396_16165 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ396_16170 PF00482 Type II secretion system (T2SS), protein F HQ396_16175 PF01478 Type IV leader peptidase family HQ396_16175 PF06750 Bacterial Peptidase A24 N-terminal domain HQ396_16180 PF01121 Dephospho-CoA kinase HQ396_16185 PF07072 Cell division protein HQ396_16190 PF03884 DNA gyrase inhibitor YacG HQ396_16195 PF00293 NUDIX domain HQ396_16205 PF02810 SEC-C motif HQ396_16205 PF07517 SecA DEAD-like domain HQ396_16205 PF01043 SecA preprotein cross-linking domain HQ396_16205 PF07516 SecA Wing and Scaffold domain HQ396_16215 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HQ396_16220 PF12327 FtsZ family, C-terminal domain HQ396_16220 PF00091 Tubulin/FtsZ family, GTPase domain HQ396_16225 PF02491 SHS2 domain inserted in FTSA HQ396_16235 PF08245 Mur ligase middle domain HQ396_16235 PF01225 Mur ligase family, catalytic domain HQ396_16235 PF02875 Mur ligase family, glutamate ligase domain HQ396_16245 PF01098 Cell cycle protein HQ396_16250 PF08245 Mur ligase middle domain HQ396_16250 PF02875 Mur ligase family, glutamate ligase domain HQ396_16255 PF00953 Glycosyl transferase family 4 HQ396_16255 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HQ396_16260 PF01225 Mur ligase family, catalytic domain HQ396_16260 PF02875 Mur ligase family, glutamate ligase domain HQ396_16260 PF08245 Mur ligase middle domain HQ396_16265 PF02875 Mur ligase family, glutamate ligase domain HQ396_16265 PF01225 Mur ligase family, catalytic domain HQ396_16265 PF08245 Mur ligase middle domain HQ396_16270 PF00905 Penicillin binding protein transpeptidase domain HQ396_16270 PF03717 Penicillin-binding Protein dimerisation domain HQ396_16275 PF04999 Cell division protein FtsL HQ396_16280 PF01795 MraW methylase family HQ396_16285 PF02381 MraZ protein, putative antitoxin-like HQ396_16305 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ396_16305 PF00691 OmpA family HQ396_16310 PF01618 MotA/TolQ/ExbB proton channel family HQ396_16315 PF04545 Sigma-70, region 4 HQ396_16315 PF04542 Sigma-70 region 2 HQ396_16340 PF07196 Flagellin hook IN motif HQ396_16340 PF02465 Flagellar hook-associated protein 2 N-terminus HQ396_16340 PF07195 Flagellar hook-associated protein 2 C-terminus HQ396_16350 PF00700 Bacterial flagellin C-terminal helical region HQ396_16350 PF00669 Bacterial flagellin N-terminal helical region HQ396_16365 PF00669 Bacterial flagellin N-terminal helical region HQ396_16380 PF02119 Flagellar P-ring protein HQ396_16385 PF02107 Flagellar L-ring protein HQ396_16390 PF00460 Flagella basal body rod protein HQ396_16390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ396_16395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ396_16395 PF00460 Flagella basal body rod protein HQ396_16400 PF00460 Flagella basal body rod protein HQ396_16400 PF07559 Flagellar basal body protein FlaE HQ396_16400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ396_16410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ396_16410 PF00460 Flagella basal body rod protein HQ396_16415 PF00460 Flagella basal body rod protein HQ396_16440 PF18269 T3SS EscN ATPase C-terminal domain HQ396_16440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ396_16450 PF14841 FliG middle domain HQ396_16450 PF01706 FliG C-terminal domain HQ396_16450 PF14842 FliG N-terminal domain HQ396_16455 PF01514 Secretory protein of YscJ/FliF family HQ396_16455 PF08345 Flagellar M-ring protein C-terminal HQ396_16460 PF02049 Flagellar hook-basal body complex protein FliE HQ396_16465 PF00158 Sigma-54 interaction domain HQ396_16465 PF00072 Response regulator receiver domain HQ396_16465 PF02954 Bacterial regulatory protein, Fis family HQ396_16470 PF00771 FHIPEP family HQ396_16475 PF01312 FlhB HrpN YscU SpaS Family HQ396_16480 PF01311 Bacterial export proteins, family 1 HQ396_16485 PF01313 Bacterial export proteins, family 3 HQ396_16490 PF00813 FliP family HQ396_16495 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ396_16510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ396_16515 PF04348 LppC putative lipoprotein HQ396_16520 PF02021 Uncharacterised protein family UPF0102 HQ396_16525 PF13580 SIS domain HQ396_16530 PF04972 BON domain HQ396_16535 PF04386 Stringent starvation protein B HQ396_16540 PF00043 Glutathione S-transferase, C-terminal domain HQ396_16540 PF02798 Glutathione S-transferase, N-terminal domain HQ396_16545 PF02167 Cytochrome C1 family HQ396_16550 PF00032 Cytochrome b(C-terminal)/b6/petD HQ396_16550 PF00033 Cytochrome b/b6/petB HQ396_16555 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HQ396_16555 PF00355 Rieske [2Fe-2S] domain HQ396_16560 PF00380 Ribosomal protein S9/S16 HQ396_16565 PF00572 Ribosomal protein L13 HQ396_16570 PF03969 AFG1-like ATPase HQ396_16580 PF00595 PDZ domain HQ396_16580 PF13180 PDZ domain HQ396_16585 PF13180 PDZ domain HQ396_16615 PF01979 Amidohydrolase family HQ396_16620 PF03841 L-seryl-tRNA selenium transferase HQ396_16625 PF07071 KDGP aldolase HQ396_16630 PF05043 Mga helix-turn-helix domain HQ396_16630 PF00874 PRD domain HQ396_16630 PF08279 HTH domain HQ396_16630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ396_16635 PF00381 PTS HPr component phosphorylation site HQ396_16640 PF03668 P-loop ATPase protein family HQ396_16645 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ396_16650 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ396_16655 PF00309 Sigma-54 factor, Activator interacting domain (AID) HQ396_16655 PF04552 Sigma-54, DNA binding domain HQ396_16655 PF04963 Sigma-54 factor, core binding domain HQ396_16660 PF00005 ABC transporter HQ396_16660 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ396_16665 PF03968 OstA-like protein HQ396_16670 PF06835 Lipopolysaccharide-assembly, LptC-related HQ396_16680 PF01380 SIS domain HQ396_16680 PF00571 CBS domain HQ396_16685 PF00005 ABC transporter HQ396_16690 PF02405 Permease MlaE HQ396_16695 PF02470 MlaD protein HQ396_16700 PF05494 MlaC protein HQ396_16710 PF01722 BolA-like protein HQ396_16715 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ396_16720 PF01523 Putative modulator of DNA gyrase HQ396_16725 PF04751 Protein of unknown function (DUF615) HQ396_16735 PF04363 Protein of unknown function (DUF496) HQ396_16775 PF03594 Benzoate membrane transport protein HQ396_16785 PF02219 Methylenetetrahydrofolate reductase HQ396_16805 PF03922 OmpW family HQ396_16820 PF00196 Bacterial regulatory proteins, luxR family HQ396_16830 PF00436 Single-strand binding protein family HQ396_16840 PF01545 Cation efflux family HQ396_16840 PF16916 Dimerisation domain of Zinc Transporter HQ396_16850 PF00313 'Cold-shock' DNA-binding domain HQ396_16855 PF07715 TonB-dependent Receptor Plug Domain HQ396_16855 PF00593 TonB dependent receptor HQ396_16860 PF00563 EAL domain HQ396_16860 PF00360 Phytochrome region HQ396_16860 PF00990 Diguanylate cyclase, GGDEF domain HQ396_16860 PF01590 GAF domain HQ396_16865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_16865 PF00512 His Kinase A (phospho-acceptor) domain HQ396_16865 PF00672 HAMP domain HQ396_16870 PF00072 Response regulator receiver domain HQ396_16870 PF00486 Transcriptional regulatory protein, C terminal HQ396_16885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_16885 PF00672 HAMP domain HQ396_16895 PF00990 Diguanylate cyclase, GGDEF domain HQ396_16905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ396_16930 PF17946 RecC C-terminal domain HQ396_16935 PF07681 DoxX HQ396_16940 PF17954 Quercetinase C-terminal cupin domain HQ396_16940 PF02678 Pirin HQ396_16950 PF03466 LysR substrate binding domain HQ396_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_16960 PF00392 Bacterial regulatory proteins, gntR family HQ396_16960 PF07702 UTRA domain HQ396_16975 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_16985 PF08402 TOBE domain HQ396_16985 PF00005 ABC transporter HQ396_17015 PF00583 Acetyltransferase (GNAT) family HQ396_17020 PF00199 Catalase HQ396_17020 PF06628 Catalase-related immune-responsive HQ396_17045 PF00293 NUDIX domain HQ396_17060 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ396_17065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_17065 PF03466 LysR substrate binding domain HQ396_17070 PF02954 Bacterial regulatory protein, Fis family HQ396_17070 PF00989 PAS fold HQ396_17070 PF00158 Sigma-54 interaction domain HQ396_17075 PF00465 Iron-containing alcohol dehydrogenase HQ396_17080 PF00381 PTS HPr component phosphorylation site HQ396_17080 PF00391 PEP-utilising enzyme, mobile domain HQ396_17080 PF05524 PEP-utilising enzyme, N-terminal HQ396_17080 PF03610 PTS system fructose IIA component HQ396_17085 PF02734 DAK2 domain HQ396_17090 PF02733 Dak1 domain HQ396_17095 PF00860 Permease family HQ396_17135 PF00009 Elongation factor Tu GTP binding domain HQ396_17135 PF03144 Elongation factor Tu domain 2 HQ396_17135 PF03143 Elongation factor Tu C-terminal domain HQ396_17140 PF03144 Elongation factor Tu domain 2 HQ396_17140 PF00009 Elongation factor Tu GTP binding domain HQ396_17140 PF03764 Elongation factor G, domain IV HQ396_17140 PF00679 Elongation factor G C-terminus HQ396_17140 PF14492 Elongation Factor G, domain II HQ396_17145 PF00177 Ribosomal protein S7p/S5e HQ396_17150 PF00164 Ribosomal protein S12/S23 HQ396_17155 PF04077 DsrH like protein HQ396_17160 PF02635 DsrE/DsrF-like family HQ396_17165 PF02635 DsrE/DsrF-like family HQ396_17170 PF01042 Endoribonuclease L-PSP HQ396_17175 PF13309 HTH domain HQ396_17175 PF08348 YheO-like PAS domain HQ396_17180 PF04998 RNA polymerase Rpb1, domain 5 HQ396_17180 PF05000 RNA polymerase Rpb1, domain 4 HQ396_17180 PF04983 RNA polymerase Rpb1, domain 3 HQ396_17180 PF00623 RNA polymerase Rpb1, domain 2 HQ396_17180 PF04997 RNA polymerase Rpb1, domain 1 HQ396_17185 PF04563 RNA polymerase beta subunit HQ396_17185 PF04561 RNA polymerase Rpb2, domain 2 HQ396_17185 PF04565 RNA polymerase Rpb2, domain 3 HQ396_17185 PF10385 RNA polymerase beta subunit external 1 domain HQ396_17185 PF00562 RNA polymerase Rpb2, domain 6 HQ396_17185 PF04560 RNA polymerase Rpb2, domain 7 HQ396_17190 PF16320 Ribosomal protein L7/L12 dimerisation domain HQ396_17190 PF00542 Ribosomal protein L7/L12 C-terminal domain HQ396_17195 PF00466 Ribosomal protein L10 HQ396_17200 PF00687 Ribosomal protein L1p/L10e family HQ396_17205 PF00298 Ribosomal protein L11, RNA binding domain HQ396_17205 PF03946 Ribosomal protein L11, N-terminal domain HQ396_17210 PF00467 KOW motif HQ396_17210 PF02357 Transcription termination factor nusG HQ396_17215 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HQ396_17225 PF00009 Elongation factor Tu GTP binding domain HQ396_17225 PF03144 Elongation factor Tu domain 2 HQ396_17225 PF03143 Elongation factor Tu C-terminal domain HQ396_17240 PF00485 Phosphoribulokinase / Uridine kinase family HQ396_17245 PF02237 Biotin protein ligase C terminal domain HQ396_17245 PF03099 Biotin/lipoate A/B protein ligase family HQ396_17245 PF08279 HTH domain HQ396_17250 PF01565 FAD binding domain HQ396_17250 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HQ396_17260 PF02386 Cation transport protein HQ396_17265 PF12852 Cupin HQ396_17265 PF12833 Helix-turn-helix domain HQ396_17280 PF01131 DNA topoisomerase HQ396_17280 PF01751 Toprim domain HQ396_17285 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ396_17300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_17320 PF01794 Ferric reductase like transmembrane component HQ396_17325 PF00174 Oxidoreductase molybdopterin binding domain HQ396_17330 PF06496 Protein of unknown function (DUF1097) HQ396_17345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_17345 PF00512 His Kinase A (phospho-acceptor) domain HQ396_17365 PF00571 CBS domain HQ396_17365 PF00478 IMP dehydrogenase / GMP reductase domain HQ396_17370 PF10063 Uncharacterized integral membrane protein (DUF2301) HQ396_17380 PF01037 Lrp/AsnC ligand binding domain HQ396_17385 PF03590 Aspartate-ammonia ligase HQ396_17395 PF10431 C-terminal, D2-small domain, of ClpB protein HQ396_17395 PF02861 Clp amino terminal domain, pathogenicity island component HQ396_17395 PF07724 AAA domain (Cdc48 subfamily) HQ396_17395 PF00004 ATPase family associated with various cellular activities (AAA) HQ396_17395 PF17871 AAA lid domain HQ396_17400 PF02578 Multi-copper polyphenol oxidoreductase laccase HQ396_17410 PF13525 Outer membrane lipoprotein HQ396_17415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ396_17415 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_17420 PF00375 Sodium:dicarboxylate symporter family HQ396_17425 PF03313 Serine dehydratase alpha chain HQ396_17435 PF02233 NAD(P) transhydrogenase beta subunit HQ396_17440 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ396_17440 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ396_17440 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HQ396_17445 PF00465 Iron-containing alcohol dehydrogenase HQ396_17450 PF06719 AraC-type transcriptional regulator N-terminus HQ396_17450 PF12833 Helix-turn-helix domain HQ396_17455 PF08212 Lipocalin-like domain HQ396_17460 PF02743 Cache domain HQ396_17460 PF00672 HAMP domain HQ396_17460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_17470 PF02666 Phosphatidylserine decarboxylase HQ396_17485 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ396_17485 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ396_17490 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HQ396_17490 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HQ396_17495 PF01316 Arginine repressor, DNA binding domain HQ396_17495 PF02863 Arginine repressor, C-terminal domain HQ396_17500 PF03606 C4-dicarboxylate anaerobic carrier HQ396_17505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ396_17505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ396_17510 PF00696 Amino acid kinase family HQ396_17535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_17535 PF02743 Cache domain HQ396_17535 PF00672 HAMP domain HQ396_17540 PF02653 Branched-chain amino acid transport system / permease component HQ396_17545 PF00005 ABC transporter HQ396_17550 PF13407 Periplasmic binding protein domain HQ396_17570 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ396_17570 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ396_17575 PF08544 GHMP kinases C terminal HQ396_17575 PF00288 GHMP kinases N terminal domain HQ396_17575 PF10509 Galactokinase galactose-binding signature HQ396_17580 PF01263 Aldose 1-epimerase HQ396_17585 PF00248 Aldo/keto reductase family HQ396_17590 PF02673 Bacitracin resistance protein BacA HQ396_17595 PF12973 ChrR Cupin-like domain HQ396_17600 PF04542 Sigma-70 region 2 HQ396_17600 PF04545 Sigma-70, region 4 HQ396_17610 PF03485 Arginyl tRNA synthetase N terminal domain HQ396_17610 PF00750 tRNA synthetases class I (R) HQ396_17610 PF05746 DALR anticodon binding domain HQ396_17625 PF00227 Proteasome subunit HQ396_17630 PF00004 ATPase family associated with various cellular activities (AAA) HQ396_17630 PF07724 AAA domain (Cdc48 subfamily) HQ396_17630 PF10431 C-terminal, D2-small domain, of ClpB protein HQ396_17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_17640 PF03466 LysR substrate binding domain HQ396_17645 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ396_17645 PF18267 Rubredoxin NAD+ reductase C-terminal domain HQ396_17645 PF04324 BFD-like [2Fe-2S] binding domain HQ396_17645 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ396_17645 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_17650 PF13806 Rieske-like [2Fe-2S] domain HQ396_17655 PF01226 Formate/nitrite transporter HQ396_17660 PF10414 Sirohaem synthase dimerisation region HQ396_17660 PF14824 Sirohaem biosynthesis protein central HQ396_17660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ396_17665 PF01769 Divalent cation transporter HQ396_17665 PF00571 CBS domain HQ396_17665 PF03448 MgtE intracellular N domain HQ396_17670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_17670 PF00672 HAMP domain HQ396_17675 PF03737 Aldolase/RraA HQ396_17680 PF02592 Putative vitamin uptake transporter HQ396_17690 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HQ396_17695 PF00034 Cytochrome c HQ396_17700 PF00270 DEAD/DEAH box helicase HQ396_17700 PF09382 RQC domain HQ396_17700 PF16124 RecQ zinc-binding HQ396_17700 PF00570 HRDC domain HQ396_17700 PF00271 Helicase conserved C-terminal domain HQ396_17705 PF03061 Thioesterase superfamily HQ396_17720 PF03475 3-alpha domain HQ396_17720 PF03473 MOSC domain HQ396_17725 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_17730 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_17735 PF08402 TOBE domain HQ396_17735 PF00005 ABC transporter HQ396_17740 PF13416 Bacterial extracellular solute-binding protein HQ396_17745 PF13416 Bacterial extracellular solute-binding protein HQ396_17760 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ396_17775 PF05981 CreA protein HQ396_17780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ396_17780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ396_17785 PF00012 Hsp70 protein HQ396_17800 PF00128 Alpha amylase, catalytic domain HQ396_17800 PF02903 Alpha amylase, N-terminal ig-like domain HQ396_17815 PF05958 tRNA (Uracil-5-)-methyltransferase HQ396_17820 PF00072 Response regulator receiver domain HQ396_17820 PF00486 Transcriptional regulatory protein, C terminal HQ396_17825 PF00512 His Kinase A (phospho-acceptor) domain HQ396_17825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_17825 PF00672 HAMP domain HQ396_17835 PF00390 Malic enzyme, N-terminal domain HQ396_17835 PF03949 Malic enzyme, NAD binding domain HQ396_17845 PF01197 Ribosomal protein L31 HQ396_17850 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HQ396_17850 PF17764 3′ DNA-binding domain (3′BD) HQ396_17850 PF00271 Helicase conserved C-terminal domain HQ396_17850 PF00270 DEAD/DEAH box helicase HQ396_17850 PF18074 Primosomal protein N C-terminal domain HQ396_17860 PF00691 OmpA family HQ396_17860 PF01389 OmpA-like transmembrane domain HQ396_17865 PF00585 C-terminal regulatory domain of Threonine dehydratase HQ396_17865 PF00291 Pyridoxal-phosphate dependent enzyme HQ396_17870 PF00920 Dehydratase family HQ396_17875 PF01063 Amino-transferase class IV HQ396_17885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ396_17885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ396_17885 PF00205 Thiamine pyrophosphate enzyme, central domain HQ396_17890 PF01078 Magnesium chelatase, subunit ChlI HQ396_17890 PF13335 Magnesium chelatase, subunit ChlI C-terminal HQ396_17895 PF01553 Acyltransferase HQ396_17900 PF01553 Acyltransferase HQ396_17905 PF04463 Protein of unknown function (DUF523) HQ396_17915 PF00857 Isochorismatase family HQ396_17920 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HQ396_17920 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HQ396_17930 PF00005 ABC transporter HQ396_17935 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_17940 PF01323 DSBA-like thioredoxin domain HQ396_17945 PF01636 Phosphotransferase enzyme family HQ396_17950 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HQ396_17950 PF12801 4Fe-4S binding domain HQ396_17950 PF13746 4Fe-4S dicluster domain HQ396_17955 PF06288 Protein of unknown function (DUF1040) HQ396_17960 PF00563 EAL domain HQ396_17960 PF01590 GAF domain HQ396_17960 PF00990 Diguanylate cyclase, GGDEF domain HQ396_17960 PF00360 Phytochrome region HQ396_17965 PF00376 MerR family regulatory protein HQ396_17965 PF09278 MerR, DNA binding HQ396_17970 PF00403 Heavy-metal-associated domain HQ396_17975 PF00156 Phosphoribosyl transferase domain HQ396_17980 PF03725 3' exoribonuclease family, domain 2 HQ396_17980 PF01138 3' exoribonuclease family, domain 1 HQ396_17985 PF08340 Domain of unknown function (DUF1732) HQ396_17985 PF03755 YicC-like family, N-terminal region HQ396_18005 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HQ396_18020 PF01370 NAD dependent epimerase/dehydratase family HQ396_18025 PF00440 Bacterial regulatory proteins, tetR family HQ396_18025 PF08360 QacR-like protein, C-terminal region HQ396_18030 PF00155 Aminotransferase class I and II HQ396_18035 PF08240 Alcohol dehydrogenase GroES-like domain HQ396_18035 PF00107 Zinc-binding dehydrogenase HQ396_18040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ396_18045 PF03707 Bacterial signalling protein N terminal repeat HQ396_18045 PF00563 EAL domain HQ396_18045 PF00990 Diguanylate cyclase, GGDEF domain HQ396_18050 PF00580 UvrD/REP helicase N-terminal domain HQ396_18050 PF13361 UvrD-like helicase C-terminal domain HQ396_18055 PF00266 Aminotransferase class-V HQ396_18060 PF02657 Fe-S metabolism associated domain HQ396_18065 PF00899 ThiF family HQ396_18105 PF01177 Asp/Glu/Hydantoin racemase HQ396_18110 PF07715 TonB-dependent Receptor Plug Domain HQ396_18110 PF00593 TonB dependent receptor HQ396_18115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_18115 PF03466 LysR substrate binding domain HQ396_18140 PF07690 Major Facilitator Superfamily HQ396_18155 PF01810 LysE type translocator HQ396_18160 PF07690 Major Facilitator Superfamily HQ396_18170 PF00210 Ferritin-like domain HQ396_18175 PF00990 Diguanylate cyclase, GGDEF domain HQ396_18185 PF00582 Universal stress protein family HQ396_18190 PF00579 tRNA synthetases class I (W and Y) HQ396_18195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_18195 PF03466 LysR substrate binding domain HQ396_18215 PF00892 EamA-like transporter family HQ396_18230 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ396_18235 PF00625 Guanylate kinase HQ396_18240 PF01192 RNA polymerase Rpb6 HQ396_18245 PF13291 ACT domain HQ396_18245 PF02824 TGS domain HQ396_18245 PF04607 Region found in RelA / SpoT proteins HQ396_18255 PF00132 Bacterial transferase hexapeptide (six repeats) HQ396_18275 PF00072 Response regulator receiver domain HQ396_18275 PF02954 Bacterial regulatory protein, Fis family HQ396_18275 PF14532 Sigma-54 interaction domain HQ396_18295 PF02887 Pyruvate kinase, alpha/beta domain HQ396_18295 PF00224 Pyruvate kinase, barrel domain HQ396_18345 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ396_18345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ396_18360 PF02669 K+-transporting ATPase, c chain HQ396_18370 PF00486 Transcriptional regulatory protein, C terminal HQ396_18370 PF00072 Response regulator receiver domain HQ396_18375 PF07690 Major Facilitator Superfamily HQ396_18390 PF00155 Aminotransferase class I and II HQ396_18395 PF00011 Hsp20/alpha crystallin family HQ396_18400 PF00011 Hsp20/alpha crystallin family HQ396_18405 PF13280 WYL domain HQ396_18405 PF08279 HTH domain HQ396_18415 PF00204 DNA gyrase B HQ396_18415 PF00986 DNA gyrase B subunit, carboxyl terminus HQ396_18415 PF18053 DNA gyrase B subunit insert domain HQ396_18415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_18415 PF01751 Toprim domain HQ396_18420 PF02463 RecF/RecN/SMC N terminal domain HQ396_18425 PF02768 DNA polymerase III beta subunit, C-terminal domain HQ396_18425 PF00712 DNA polymerase III beta subunit, N-terminal domain HQ396_18425 PF02767 DNA polymerase III beta subunit, central domain HQ396_18430 PF00308 Bacterial dnaA protein HQ396_18430 PF08299 Bacterial dnaA protein helix-turn-helix HQ396_18430 PF11638 DnaA N-terminal domain HQ396_18435 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_18440 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_18445 PF00005 ABC transporter HQ396_18450 PF00468 Ribosomal protein L34 HQ396_18455 PF00825 Ribonuclease P HQ396_18460 PF01809 Putative membrane protein insertion efficiency factor HQ396_18465 PF14849 YidC periplasmic domain HQ396_18465 PF02096 60Kd inner membrane protein HQ396_18470 PF12631 MnmE helical domain HQ396_18470 PF10396 GTP-binding protein TrmE N-terminus HQ396_18470 PF01926 50S ribosome-binding GTPase HQ396_18475 PF01032 FecCD transport family HQ396_18485 PF00005 ABC transporter HQ396_18490 PF00005 ABC transporter HQ396_18500 PF00258 Flavodoxin HQ396_18505 PF01134 Glucose inhibited division protein A HQ396_18505 PF13932 GidA associated domain HQ396_18510 PF02527 rRNA small subunit methyltransferase G HQ396_18515 PF13614 AAA domain HQ396_18520 PF02195 ParB-like nuclease domain HQ396_18520 PF17762 HTH domain found in ParB protein HQ396_18530 PF00119 ATP synthase A chain HQ396_18535 PF00137 ATP synthase subunit C HQ396_18540 PF00430 ATP synthase B/B' CF(0) HQ396_18545 PF00213 ATP synthase delta (OSCP) subunit HQ396_18550 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ396_18550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ396_18550 PF00306 ATP synthase alpha/beta chain, C terminal domain HQ396_18555 PF00231 ATP synthase HQ396_18560 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ396_18560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ396_18565 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HQ396_18565 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HQ396_18570 PF00132 Bacterial transferase hexapeptide (six repeats) HQ396_18570 PF14602 Hexapeptide repeat of succinyl-transferase HQ396_18570 PF12804 MobA-like NTP transferase domain HQ396_18575 PF06123 Inner membrane protein CreD HQ396_18580 PF00905 Penicillin binding protein transpeptidase domain HQ396_18585 PF00672 HAMP domain HQ396_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_18585 PF00512 His Kinase A (phospho-acceptor) domain HQ396_18590 PF00072 Response regulator receiver domain HQ396_18590 PF00486 Transcriptional regulatory protein, C terminal HQ396_18595 PF00455 DeoR C terminal sensor domain HQ396_18595 PF08220 DeoR-like helix-turn-helix domain HQ396_18600 PF01380 SIS domain HQ396_18605 PF03472 Autoinducer binding domain HQ396_18605 PF00196 Bacterial regulatory proteins, luxR family HQ396_18615 PF01618 MotA/TolQ/ExbB proton channel family HQ396_18620 PF01618 MotA/TolQ/ExbB proton channel family HQ396_18625 PF02472 Biopolymer transport protein ExbD/TolR HQ396_18630 PF03544 Gram-negative bacterial TonB protein C-terminal HQ396_18670 PF07969 Amidohydrolase family HQ396_18675 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HQ396_18680 PF01209 ubiE/COQ5 methyltransferase family HQ396_18685 PF02036 SCP-2 sterol transfer family HQ396_18695 PF02416 mttA/Hcf106 family HQ396_18700 PF02416 mttA/Hcf106 family HQ396_18705 PF00902 Sec-independent protein translocase protein (TatC) HQ396_18710 PF01026 TatD related DNase HQ396_18715 PF00490 Delta-aminolevulinic acid dehydratase HQ396_18720 PF01432 Peptidase family M3 HQ396_18725 PF00563 EAL domain HQ396_18725 PF00990 Diguanylate cyclase, GGDEF domain HQ396_18725 PF03707 Bacterial signalling protein N terminal repeat HQ396_18730 PF04445 Putative SAM-dependent methyltransferase HQ396_18745 PF02541 Ppx/GppA phosphatase family HQ396_18750 PF00270 DEAD/DEAH box helicase HQ396_18750 PF00271 Helicase conserved C-terminal domain HQ396_18755 PF00085 Thioredoxin HQ396_18760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ396_18760 PF07497 Rho termination factor, RNA-binding domain HQ396_18760 PF07498 Rho termination factor, N-terminal domain HQ396_18770 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HQ396_18775 PF00175 Oxidoreductase NAD-binding domain HQ396_18780 PF04380 Membrane fusogenic activity HQ396_18785 PF12262 Bacterial virulence factor lipase N-terminal HQ396_18795 PF00581 Rhodanese-like domain HQ396_18810 PF00005 ABC transporter HQ396_18815 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ396_18815 PF00005 ABC transporter HQ396_18820 PF02653 Branched-chain amino acid transport system / permease component HQ396_18820 PF11862 Domain of unknown function (DUF3382) HQ396_18825 PF02653 Branched-chain amino acid transport system / permease component HQ396_18830 PF13458 Periplasmic binding protein HQ396_18835 PF00356 Bacterial regulatory proteins, lacI family HQ396_18840 PF00158 Sigma-54 interaction domain HQ396_18840 PF01590 GAF domain HQ396_18845 PF00753 Metallo-beta-lactamase superfamily HQ396_18845 PF00301 Rubredoxin HQ396_18845 PF00258 Flavodoxin HQ396_18860 PF12801 4Fe-4S binding domain HQ396_18865 PF03222 Tryptophan/tyrosine permease family HQ396_18875 PF05932 Tir chaperone protein (CesT) family HQ396_18900 PF01747 ATP-sulfurylase HQ396_18900 PF14306 PUA-like domain HQ396_18910 PF05746 DALR anticodon binding domain HQ396_18910 PF02092 Glycyl-tRNA synthetase beta subunit HQ396_18915 PF02091 Glycyl-tRNA synthetase alpha subunit HQ396_18920 PF03352 Methyladenine glycosylase HQ396_18925 PF17200 Single Cache domain 2 HQ396_18925 PF00672 HAMP domain HQ396_18925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_18930 PF13488 Glycine zipper HQ396_18930 PF00691 OmpA family HQ396_18935 PF01042 Endoribonuclease L-PSP HQ396_18940 PF01206 Sulfurtransferase TusA HQ396_18950 PF01547 Bacterial extracellular solute-binding protein HQ396_18955 PF00512 His Kinase A (phospho-acceptor) domain HQ396_18955 PF00672 HAMP domain HQ396_18955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_18960 PF00486 Transcriptional regulatory protein, C terminal HQ396_18960 PF00072 Response regulator receiver domain HQ396_18965 PF02803 Thiolase, C-terminal domain HQ396_18965 PF00108 Thiolase, N-terminal domain HQ396_18970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ396_18970 PF00378 Enoyl-CoA hydratase/isomerase HQ396_18970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ396_18975 PF00501 AMP-binding enzyme HQ396_18975 PF13193 AMP-binding enzyme C-terminal domain HQ396_18980 PF00557 Metallopeptidase family M24 HQ396_18985 PF09186 Domain of unknown function (DUF1949) HQ396_18985 PF01205 Uncharacterized protein family UPF0029 HQ396_18995 PF12724 Flavodoxin domain HQ396_19035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_19035 PF03466 LysR substrate binding domain HQ396_19040 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HQ396_19040 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HQ396_19045 PF00342 Phosphoglucose isomerase HQ396_19055 PF00924 Mechanosensitive ion channel HQ396_19055 PF05552 Conserved TM helix HQ396_19060 PF00440 Bacterial regulatory proteins, tetR family HQ396_19065 PF00692 dUTPase HQ396_19075 PF04002 RadC-like JAB domain HQ396_19080 PF00830 Ribosomal L28 family HQ396_19085 PF00471 Ribosomal protein L33 HQ396_19095 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HQ396_19095 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HQ396_19095 PF06827 Zinc finger found in FPG and IleRS HQ396_19100 PF04393 Protein of unknown function (DUF535) HQ396_19105 PF01467 Cytidylyltransferase-like HQ396_19110 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ396_19115 PF00535 Glycosyl transferase family 2 HQ396_19120 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ396_19125 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HQ396_19140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ396_19145 PF00356 Bacterial regulatory proteins, lacI family HQ396_19145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ396_19150 PF08240 Alcohol dehydrogenase GroES-like domain HQ396_19150 PF00107 Zinc-binding dehydrogenase HQ396_19165 PF03748 Flagellar basal body-associated protein FliL HQ396_19170 PF04345 Chorismate lyase HQ396_19180 PF01553 Acyltransferase HQ396_19185 PF01726 LexA DNA binding domain HQ396_19185 PF00717 Peptidase S24-like HQ396_19195 PF02630 SCO1/SenC HQ396_19200 PF01554 MatE HQ396_19205 PF00588 SpoU rRNA Methylase family HQ396_19210 PF00512 His Kinase A (phospho-acceptor) domain HQ396_19210 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ396_19210 PF00672 HAMP domain HQ396_19210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_19215 PF00072 Response regulator receiver domain HQ396_19215 PF00486 Transcriptional regulatory protein, C terminal HQ396_19220 PF01545 Cation efflux family HQ396_19220 PF16916 Dimerisation domain of Zinc Transporter HQ396_19225 PF00132 Bacterial transferase hexapeptide (six repeats) HQ396_19225 PF06426 Serine acetyltransferase, N-terminal HQ396_19235 PF06005 Cell division protein ZapB HQ396_19245 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ396_19245 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ396_19245 PF01612 3'-5' exonuclease HQ396_19245 PF00476 DNA polymerase family A HQ396_19250 PF00132 Bacterial transferase hexapeptide (six repeats) HQ396_19285 PF00356 Bacterial regulatory proteins, lacI family HQ396_19290 PF02929 Beta galactosidase small chain HQ396_19290 PF16353 Domain of unknown function(DUF4981) HQ396_19290 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ396_19290 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ396_19290 PF00703 Glycosyl hydrolases family 2 HQ396_19295 PF04074 YhcH/YjgK/YiaL HQ396_19300 PF13520 Amino acid permease HQ396_19305 PF01588 Putative tRNA binding domain HQ396_19310 PF13520 Amino acid permease HQ396_19315 PF13593 SBF-like CPA transporter family (DUF4137) HQ396_19330 PF00756 Putative esterase HQ396_19335 PF08240 Alcohol dehydrogenase GroES-like domain HQ396_19335 PF00107 Zinc-binding dehydrogenase HQ396_19340 PF03466 LysR substrate binding domain HQ396_19340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_19350 PF02653 Branched-chain amino acid transport system / permease component HQ396_19355 PF00005 ABC transporter HQ396_19360 PF02608 ABC transporter substrate-binding protein PnrA-like HQ396_19365 PF00580 UvrD/REP helicase N-terminal domain HQ396_19365 PF13361 UvrD-like helicase C-terminal domain HQ396_19380 PF03466 LysR substrate binding domain HQ396_19380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_19400 PF14001 YdfZ protein HQ396_19425 PF06206 CpeT/CpcT family (DUF1001) HQ396_19435 PF01810 LysE type translocator HQ396_19440 PF04143 Sulphur transport HQ396_19445 PF00689 Cation transporting ATPase, C-terminus HQ396_19445 PF00690 Cation transporter/ATPase, N-terminus HQ396_19450 PF01810 LysE type translocator HQ396_19455 PF12833 Helix-turn-helix domain HQ396_19460 PF00892 EamA-like transporter family HQ396_19470 PF00171 Aldehyde dehydrogenase family HQ396_19475 PF01381 Helix-turn-helix HQ396_19475 PF07883 Cupin domain HQ396_19490 PF00117 Glutamine amidotransferase class-I HQ396_19490 PF02540 NAD synthase HQ396_19490 PF00958 GMP synthase C terminal domain HQ396_19495 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ396_19495 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ396_19505 PF02082 Transcriptional regulator HQ396_19520 PF02646 RmuC family HQ396_19525 PF02386 Cation transport protein HQ396_19530 PF02254 TrkA-N domain HQ396_19530 PF02080 TrkA-C domain HQ396_19545 PF01327 Polypeptide deformylase HQ396_19555 PF17782 DprA winged helix domain HQ396_19555 PF02481 DNA recombination-mediator protein A HQ396_19560 PF04361 Protein of unknown function (DUF494) HQ396_19565 PF01396 Topoisomerase DNA binding C4 zinc finger HQ396_19570 PF00731 AIR carboxylase HQ396_19575 PF01300 Telomere recombination HQ396_19580 PF01218 Coproporphyrinogen III oxidase HQ396_19585 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HQ396_19585 PF08501 Shikimate dehydrogenase substrate binding domain HQ396_19585 PF01488 Shikimate / quinate 5-dehydrogenase HQ396_19590 PF07369 Protein of unknown function (DUF1488) HQ396_19595 PF01926 50S ribosome-binding GTPase HQ396_19600 PF00034 Cytochrome c HQ396_19605 PF04220 Der GTPase activator (YihI) HQ396_19610 PF10675 Protein of unknown function (DUF2489) HQ396_19615 PF04055 Radical SAM superfamily HQ396_19615 PF06969 HemN C-terminal domain HQ396_19620 PF00962 Adenosine/AMP deaminase HQ396_19625 PF00072 Response regulator receiver domain HQ396_19625 PF02954 Bacterial regulatory protein, Fis family HQ396_19625 PF00158 Sigma-54 interaction domain HQ396_19630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_19630 PF00512 His Kinase A (phospho-acceptor) domain HQ396_19630 PF00989 PAS fold HQ396_19640 PF00120 Glutamine synthetase, catalytic domain HQ396_19640 PF03951 Glutamine synthetase, beta-Grasp domain HQ396_19645 PF00009 Elongation factor Tu GTP binding domain HQ396_19645 PF03144 Elongation factor Tu domain 2 HQ396_19645 PF00679 Elongation factor G C-terminus HQ396_19650 PF03631 Virulence factor BrkB HQ396_19655 PF03631 Virulence factor BrkB HQ396_19660 PF02580 D-Tyr-tRNA(Tyr) deacylase HQ396_19670 PF00583 Acetyltransferase (GNAT) family HQ396_19670 PF09500 Putative thioesterase (yiiD_Cterm) HQ396_19680 PF00270 DEAD/DEAH box helicase HQ396_19680 PF00271 Helicase conserved C-terminal domain HQ396_19680 PF17191 RecG wedge domain HQ396_19685 PF13091 PLD-like domain HQ396_19690 PF02447 GntP family permease HQ396_19695 PF01202 Shikimate kinase HQ396_19700 PF00920 Dehydratase family HQ396_19705 PF01081 KDPG and KHG aldolase HQ396_19710 PF00356 Bacterial regulatory proteins, lacI family HQ396_19710 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ396_19720 PF01551 Peptidase family M23 HQ396_19725 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ396_19725 PF01676 Metalloenzyme superfamily HQ396_19730 PF00581 Rhodanese-like domain HQ396_19735 PF02556 Preprotein translocase subunit SecB HQ396_19740 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HQ396_19740 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HQ396_19745 PF01521 Iron-sulphur cluster biosynthesis HQ396_19745 PF01106 NifU-like domain HQ396_19755 PF00561 alpha/beta hydrolase fold HQ396_19775 PF17674 HHH domain HQ396_19775 PF09371 Tex-like protein N-terminal domain HQ396_19775 PF16921 Tex protein YqgF-like domain HQ396_19775 PF00575 S1 RNA binding domain HQ396_19780 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ396_19780 PF03449 Transcription elongation factor, N-terminal HQ396_19785 PF00486 Transcriptional regulatory protein, C terminal HQ396_19785 PF00072 Response regulator receiver domain HQ396_19790 PF00512 His Kinase A (phospho-acceptor) domain HQ396_19790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_19790 PF00672 HAMP domain HQ396_19800 PF00338 Ribosomal protein S10p/S20e HQ396_19805 PF00297 Ribosomal protein L3 HQ396_19810 PF00573 Ribosomal protein L4/L1 family HQ396_19815 PF00276 Ribosomal protein L23 HQ396_19820 PF00181 Ribosomal Proteins L2, RNA binding domain HQ396_19820 PF03947 Ribosomal Proteins L2, C-terminal domain HQ396_19825 PF00203 Ribosomal protein S19 HQ396_19830 PF00237 Ribosomal protein L22p/L17e HQ396_19835 PF00189 Ribosomal protein S3, C-terminal domain HQ396_19835 PF07650 KH domain HQ396_19840 PF00252 Ribosomal protein L16p/L10e HQ396_19845 PF00831 Ribosomal L29 protein HQ396_19850 PF00366 Ribosomal protein S17 HQ396_19855 PF00238 Ribosomal protein L14p/L23e HQ396_19860 PF00467 KOW motif HQ396_19860 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HQ396_19865 PF00673 ribosomal L5P family C-terminus HQ396_19865 PF00281 Ribosomal protein L5 HQ396_19870 PF00253 Ribosomal protein S14p/S29e HQ396_19875 PF00410 Ribosomal protein S8 HQ396_19880 PF00347 Ribosomal protein L6 HQ396_19885 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HQ396_19890 PF00333 Ribosomal protein S5, N-terminal domain HQ396_19890 PF03719 Ribosomal protein S5, C-terminal domain HQ396_19895 PF00327 Ribosomal protein L30p/L7e HQ396_19900 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HQ396_19905 PF00344 SecY translocase HQ396_19910 PF00444 Ribosomal protein L36 HQ396_19915 PF00416 Ribosomal protein S13/S18 HQ396_19920 PF00411 Ribosomal protein S11 HQ396_19925 PF00163 Ribosomal protein S4/S9 N-terminal domain HQ396_19925 PF01479 S4 domain HQ396_19930 PF01000 RNA polymerase Rpb3/RpoA insert domain HQ396_19930 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HQ396_19930 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HQ396_19935 PF01196 Ribosomal protein L17 HQ396_19980 PF02254 TrkA-N domain HQ396_19980 PF00999 Sodium/hydrogen exchanger family HQ396_19985 PF02525 Flavodoxin-like fold HQ396_19990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_19990 PF03466 LysR substrate binding domain HQ396_19995 PF00106 short chain dehydrogenase HQ396_20010 PF00326 Prolyl oligopeptidase family HQ396_20010 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ396_20030 PF07947 YhhN family HQ396_20035 PF07690 Major Facilitator Superfamily HQ396_20040 PF13533 Biotin-lipoyl like HQ396_20045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_20045 PF03466 LysR substrate binding domain HQ396_20055 PF00375 Sodium:dicarboxylate symporter family HQ396_20060 PF10678 Protein of unknown function (DUF2492) HQ396_20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_20070 PF03466 LysR substrate binding domain HQ396_20075 PF02416 mttA/Hcf106 family HQ396_20085 PF01464 Transglycosylase SLT domain HQ396_20105 PF00440 Bacterial regulatory proteins, tetR family HQ396_20110 PF07226 Protein of unknown function (DUF1422) HQ396_20125 PF00448 SRP54-type protein, GTPase domain HQ396_20125 PF02881 SRP54-type protein, helical bundle domain HQ396_20135 PF18075 FtsX extracellular domain HQ396_20140 PF04542 Sigma-70 region 2 HQ396_20140 PF04545 Sigma-70, region 4 HQ396_20140 PF00140 Sigma-70 factor, region 1.2 HQ396_20145 PF00484 Carbonic anhydrase HQ396_20155 PF01979 Amidohydrolase family HQ396_20160 PF00491 Arginase family HQ396_20170 PF00221 Aromatic amino acid lyase HQ396_20180 PF12792 CSS motif domain associated with EAL HQ396_20180 PF00563 EAL domain HQ396_20185 PF00563 EAL domain HQ396_20185 PF17157 Gammaproteobacterial periplasmic sensor domain HQ396_20185 PF00990 Diguanylate cyclase, GGDEF domain HQ396_20230 PF00437 Type II/IV secretion system protein HQ396_20230 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ396_20235 PF00482 Type II secretion system (T2SS), protein F HQ396_20245 PF07963 Prokaryotic N-terminal methylation motif HQ396_20250 PF08334 Type II secretion system (T2SS), protein G HQ396_20250 PF07963 Prokaryotic N-terminal methylation motif HQ396_20255 PF14245 Type IV pilin PilA HQ396_20255 PF07963 Prokaryotic N-terminal methylation motif HQ396_20285 PF04085 rod shape-determining protein MreC HQ396_20290 PF04093 rod shape-determining protein MreD HQ396_20295 PF02545 Maf-like protein HQ396_20300 PF10150 Ribonuclease E/G family HQ396_20300 PF00575 S1 RNA binding domain HQ396_20305 PF13502 AsmA-like C-terminal region HQ396_20305 PF13116 Protein of unknown function HQ396_20315 PF00795 Carbon-nitrogen hydrolase HQ396_20320 PF01523 Putative modulator of DNA gyrase HQ396_20335 PF07690 Major Facilitator Superfamily HQ396_20345 PF00072 Response regulator receiver domain HQ396_20350 PF01627 Hpt domain HQ396_20350 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ396_20350 PF00672 HAMP domain HQ396_20350 PF00072 Response regulator receiver domain HQ396_20350 PF00512 His Kinase A (phospho-acceptor) domain HQ396_20350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_20355 PF13581 Histidine kinase-like ATPase domain HQ396_20360 PF08678 Rsbr N terminal HQ396_20360 PF01740 STAS domain HQ396_20365 PF13426 PAS domain HQ396_20365 PF08447 PAS fold HQ396_20365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_20380 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HQ396_20385 PF04228 Putative neutral zinc metallopeptidase HQ396_20395 PF08668 HDOD domain HQ396_20410 PF00999 Sodium/hydrogen exchanger family HQ396_20415 PF02310 B12 binding domain HQ396_20415 PF02607 B12 binding domain HQ396_20415 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ396_20415 PF00809 Pterin binding enzyme HQ396_20415 PF02574 Homocysteine S-methyltransferase HQ396_20420 PF08443 RimK-like ATP-grasp domain HQ396_20420 PF18030 RimK PreATP-grasp domain HQ396_20425 PF05525 Branched-chain amino acid transport protein HQ396_20430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ396_20435 PF00072 Response regulator receiver domain HQ396_20435 PF00486 Transcriptional regulatory protein, C terminal HQ396_20455 PF03994 Domain of Unknown Function (DUF350) HQ396_20465 PF03738 Glutathionylspermidine synthase preATP-grasp HQ396_20470 PF13667 ThiC-associated domain HQ396_20470 PF01964 Radical SAM ThiC family HQ396_20475 PF02581 Thiamine monophosphate synthase HQ396_20480 PF00899 ThiF family HQ396_20490 PF05690 Thiazole biosynthesis protein ThiG HQ396_20495 PF06968 Biotin and Thiamin Synthesis associated domain HQ396_20495 PF04055 Radical SAM superfamily HQ396_20520 PF13036 Peptidoglycan-synthase activator LpoB HQ396_20540 PF00990 Diguanylate cyclase, GGDEF domain HQ396_20540 PF17151 Periplasmic sensor domain HQ396_20550 PF06055 Exopolysaccharide synthesis, ExoD HQ396_20565 PF08803 Putative mono-oxygenase ydhR HQ396_20570 PF01638 HxlR-like helix-turn-helix HQ396_20595 PF07715 TonB-dependent Receptor Plug Domain HQ396_20595 PF00593 TonB dependent receptor HQ396_20610 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HQ396_20615 PF03692 Putative zinc- or iron-chelating domain HQ396_20625 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HQ396_20630 PF02602 Uroporphyrinogen-III synthase HemD HQ396_20635 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HQ396_20635 PF03900 Porphobilinogen deaminase, C-terminal domain HQ396_20640 PF12633 Adenylate cyclase NT domain HQ396_20640 PF01295 Adenylate cyclase, class-I HQ396_20650 PF01491 Frataxin-like domain HQ396_20660 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ396_20660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ396_20675 PF00589 Phage integrase family HQ396_20675 PF02899 Phage integrase, N-terminal SAM-like domain HQ396_20680 PF13419 Haloacid dehalogenase-like hydrolase HQ396_20690 PF00027 Cyclic nucleotide-binding domain HQ396_20690 PF13545 Crp-like helix-turn-helix domain HQ396_20700 PF07722 Peptidase C26 HQ396_20720 PF00005 ABC transporter HQ396_20730 PF02464 Competence-damaged protein HQ396_20730 PF00994 Probable molybdopterin binding domain HQ396_20735 PF01966 HD domain HQ396_20735 PF00013 KH domain HQ396_20735 PF12072 Domain of unknown function (DUF3552) HQ396_20740 PF04204 Homoserine O-succinyltransferase HQ396_20750 PF01037 Lrp/AsnC ligand binding domain HQ396_20755 PF00884 Sulfatase HQ396_20795 PF00106 short chain dehydrogenase HQ396_20815 PF00465 Iron-containing alcohol dehydrogenase HQ396_20825 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ396_20835 PF12793 Sugar transport-related sRNA regulator N-term HQ396_20835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ396_20850 PF03280 Proteobacterial lipase chaperone protein HQ396_20855 PF00561 alpha/beta hydrolase fold HQ396_20870 PF02698 DUF218 domain HQ396_20875 PF01752 Collagenase HQ396_20875 PF08453 Peptidase family M9 N-terminal HQ396_20885 PF00419 Fimbrial protein HQ396_20895 PF13953 PapC C-terminal domain HQ396_20895 PF13954 PapC N-terminal domain HQ396_20895 PF00577 Outer membrane usher protein HQ396_20900 PF02753 Pili assembly chaperone PapD, C-terminal domain HQ396_20900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HQ396_20905 PF00419 Fimbrial protein HQ396_20910 PF00419 Fimbrial protein HQ396_20920 PF13193 AMP-binding enzyme C-terminal domain HQ396_20920 PF00501 AMP-binding enzyme HQ396_20925 PF13378 Enolase C-terminal domain-like HQ396_20930 PF00378 Enoyl-CoA hydratase/isomerase HQ396_20935 PF12697 Alpha/beta hydrolase family HQ396_20940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ396_20940 PF16582 Middle domain of thiamine pyrophosphate HQ396_20940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ396_20945 PF00425 chorismate binding enzyme HQ396_20950 PF01040 UbiA prenyltransferase family HQ396_20975 PF00270 DEAD/DEAH box helicase HQ396_20975 PF00271 Helicase conserved C-terminal domain HQ396_20975 PF03880 DbpA RNA binding domain HQ396_20980 PF07670 Nucleoside recognition HQ396_20980 PF07662 Na+ dependent nucleoside transporter C-terminus HQ396_20980 PF01773 Na+ dependent nucleoside transporter N-terminus HQ396_20985 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ396_21005 PF01544 CorA-like Mg2+ transporter protein HQ396_21025 PF02080 TrkA-C domain HQ396_21025 PF00999 Sodium/hydrogen exchanger family HQ396_21025 PF03471 Transporter associated domain HQ396_21030 PF05068 Mannitol repressor HQ396_21035 PF01232 Mannitol dehydrogenase Rossmann domain HQ396_21035 PF08125 Mannitol dehydrogenase C-terminal domain HQ396_21040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ396_21040 PF02378 Phosphotransferase system, EIIC HQ396_21040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ396_21050 PF00440 Bacterial regulatory proteins, tetR family HQ396_21055 PF17876 Cold shock domain HQ396_21055 PF08206 Ribonuclease B OB domain HQ396_21055 PF00773 RNB domain HQ396_21060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_21060 PF03466 LysR substrate binding domain HQ396_21065 PF00765 Autoinducer synthase HQ396_21070 PF03472 Autoinducer binding domain HQ396_21070 PF00196 Bacterial regulatory proteins, luxR family HQ396_21075 PF01810 LysE type translocator HQ396_21080 PF00149 Calcineurin-like phosphoesterase HQ396_21080 PF02872 5'-nucleotidase, C-terminal domain HQ396_21085 PF05433 Glycine zipper 2TM domain HQ396_21090 PF00583 Acetyltransferase (GNAT) family HQ396_21095 PF11756 Nitrous oxide-stimulated promoter HQ396_21100 PF00557 Metallopeptidase family M24 HQ396_21100 PF01321 Creatinase/Prolidase N-terminal domain HQ396_21105 PF00392 Bacterial regulatory proteins, gntR family HQ396_21110 PF01293 Phosphoenolpyruvate carboxykinase HQ396_21115 PF01430 Hsp33 protein HQ396_21120 PF01479 S4 domain HQ396_21125 PF11356 Type II secretion system protein C HQ396_21130 PF00263 Bacterial type II and III secretion system protein HQ396_21130 PF03958 Bacterial type II/III secretion system short domain HQ396_21135 PF00437 Type II/IV secretion system protein HQ396_21140 PF00482 Type II secretion system (T2SS), protein F HQ396_21145 PF08334 Type II secretion system (T2SS), protein G HQ396_21145 PF07963 Prokaryotic N-terminal methylation motif HQ396_21155 PF12019 Type II transport protein GspH HQ396_21155 PF07963 Prokaryotic N-terminal methylation motif HQ396_21160 PF02501 Type II secretion system (T2SS), protein I HQ396_21160 PF07963 Prokaryotic N-terminal methylation motif HQ396_21165 PF07963 Prokaryotic N-terminal methylation motif HQ396_21165 PF11612 Type II secretion system (T2SS), protein J HQ396_21170 PF03934 Type II secretion system (T2SS), protein K HQ396_21175 PF12693 GspL periplasmic domain HQ396_21175 PF05134 Type II secretion system (T2SS), protein L HQ396_21180 PF04612 Type II secretion system (T2SS), protein M HQ396_21185 PF01203 Type II secretion system (T2SS), protein N HQ396_21190 PF00196 Bacterial regulatory proteins, luxR family HQ396_21195 PF01479 S4 domain HQ396_21195 PF00579 tRNA synthetases class I (W and Y) HQ396_21200 PF13419 Haloacid dehalogenase-like hydrolase HQ396_21205 PF00293 NUDIX domain HQ396_21210 PF00459 Inositol monophosphatase family HQ396_21215 PF03222 Tryptophan/tyrosine permease family HQ396_21220 PF01588 Putative tRNA binding domain HQ396_21225 PF06445 GyrI-like small molecule binding domain HQ396_21225 PF12833 Helix-turn-helix domain HQ396_21230 PF01340 Met Apo-repressor, MetJ HQ396_21240 PF00696 Amino acid kinase family HQ396_21240 PF00742 Homoserine dehydrogenase HQ396_21240 PF03447 Homoserine dehydrogenase, NAD binding domain HQ396_21250 PF00311 Phosphoenolpyruvate carboxylase HQ396_21260 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ396_21260 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ396_21265 PF00696 Amino acid kinase family HQ396_21270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ396_21270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ396_21275 PF00764 Arginosuccinate synthase HQ396_21280 PF14698 Argininosuccinate lyase C-terminal HQ396_21280 PF00206 Lyase HQ396_21315 PF13194 Domain of unknown function (DUF4010) HQ396_21330 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_21340 PF12857 TOBE-like domain HQ396_21340 PF00005 ABC transporter HQ396_21345 PF03466 LysR substrate binding domain HQ396_21345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_21350 PF18416 N-acetylglucosamine binding protein domain 2 HQ396_21350 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ396_21355 PF12729 Four helix bundle sensory module for signal transduction HQ396_21355 PF00672 HAMP domain HQ396_21355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_21405 PF11230 Protein of unknown function (DUF3029) HQ396_21410 PF04055 Radical SAM superfamily HQ396_21420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_21420 PF03466 LysR substrate binding domain HQ396_21425 PF00155 Aminotransferase class I and II HQ396_21430 PF02583 Metal-sensitive transcriptional repressor HQ396_21455 PF08534 Redoxin HQ396_21465 PF00271 Helicase conserved C-terminal domain HQ396_21465 PF00270 DEAD/DEAH box helicase HQ396_21485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ396_21485 PF08447 PAS fold HQ396_21500 PF06062 Uncharacterised protein family (UPF0231) HQ396_21510 PF02447 GntP family permease HQ396_21515 PF02595 Glycerate kinase family HQ396_21525 PF00255 Glutathione peroxidase HQ396_21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_21530 PF03466 LysR substrate binding domain HQ396_21535 PF07662 Na+ dependent nucleoside transporter C-terminus HQ396_21535 PF07670 Nucleoside recognition HQ396_21535 PF01773 Na+ dependent nucleoside transporter N-terminus HQ396_21540 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ396_21540 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ396_21545 PF00472 RF-1 domain HQ396_21550 PF00543 Nitrogen regulatory protein P-II HQ396_21555 PF13416 Bacterial extracellular solute-binding protein HQ396_21565 PF08402 TOBE domain HQ396_21565 PF00005 ABC transporter HQ396_21570 PF04261 Dyp-type peroxidase family HQ396_21575 PF01316 Arginine repressor, DNA binding domain HQ396_21575 PF02863 Arginine repressor, C-terminal domain HQ396_21580 PF00005 ABC transporter HQ396_21585 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ396_21590 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_21595 PF00528 Binding-protein-dependent transport system inner membrane component HQ396_21600 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HQ396_21600 PF00056 lactate/malate dehydrogenase, NAD binding domain HQ396_21605 PF08238 Sel1 repeat HQ396_21610 PF00175 Oxidoreductase NAD-binding domain HQ396_21610 PF00970 Oxidoreductase FAD-binding domain HQ396_21610 PF00042 Globin HQ396_21615 PF02082 Transcriptional regulator HQ396_21620 PF01595 Cyclin M transmembrane N-terminal domain HQ396_21620 PF03471 Transporter associated domain HQ396_21620 PF00571 CBS domain HQ396_21625 PF01578 Cytochrome C assembly protein HQ396_21630 PF02978 Signal peptide binding domain HQ396_21630 PF02881 SRP54-type protein, helical bundle domain HQ396_21630 PF00448 SRP54-type protein, GTPase domain HQ396_21635 PF00886 Ribosomal protein S16 HQ396_21640 PF05239 PRC-barrel domain HQ396_21640 PF01782 RimM N-terminal domain HQ396_21645 PF01746 tRNA (Guanine-1)-methyltransferase HQ396_21650 PF01245 Ribosomal protein L19 HQ396_21660 PF02976 DNA mismatch repair enzyme MutH HQ396_21665 PF00293 NUDIX domain HQ396_21675 PF01790 Prolipoprotein diacylglyceryl transferase HQ396_21685 PF06965 Na+/H+ antiporter 1 HQ396_21695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_21695 PF03466 LysR substrate binding domain HQ396_21700 PF01022 Bacterial regulatory protein, arsR family HQ396_21705 PF01649 Ribosomal protein S20 HQ396_21720 PF06574 FAD synthetase HQ396_21720 PF01687 Riboflavin kinase HQ396_21730 PF01252 Signal peptidase (SPase) II HQ396_21735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ396_21740 PF02401 LytB protein HQ396_21745 PF07963 Prokaryotic N-terminal methylation motif HQ396_21745 PF12019 Type II transport protein GspH HQ396_21765 PF05567 Neisseria PilC beta-propeller domain HQ396_21800 PF02540 NAD synthase HQ396_21800 PF00795 Carbon-nitrogen hydrolase HQ396_21805 PF00543 Nitrogen regulatory protein P-II HQ396_21815 PF02664 S-Ribosylhomocysteinase (LuxS) HQ396_21820 PF00990 Diguanylate cyclase, GGDEF domain HQ396_21825 PF08461 Ribonuclease R winged-helix domain HQ396_21825 PF08206 Ribonuclease B OB domain HQ396_21825 PF00773 RNB domain HQ396_21825 PF00575 S1 RNA binding domain HQ396_21825 PF17876 Cold shock domain HQ396_21830 PF00588 SpoU rRNA Methylase family HQ396_21830 PF08032 RNA 2'-O ribose methyltransferase substrate binding HQ396_21840 PF13673 Acetyltransferase (GNAT) domain HQ396_21860 PF01566 Natural resistance-associated macrophage protein HQ396_21865 PF01250 Ribosomal protein S6 HQ396_21870 PF01084 Ribosomal protein S18 HQ396_21875 PF03948 Ribosomal protein L9, C-terminal domain HQ396_21875 PF01281 Ribosomal protein L9, N-terminal domain HQ396_21900 PF00550 Phosphopantetheine attachment site HQ396_21900 PF14765 Polyketide synthase dehydratase HQ396_21900 PF08659 KR domain HQ396_21900 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ396_21900 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ396_21900 PF16197 Ketoacyl-synthetase C-terminal extension HQ396_21900 PF08990 Erythronolide synthase docking HQ396_21900 PF08240 Alcohol dehydrogenase GroES-like domain HQ396_21900 PF00698 Acyl transferase domain HQ396_21905 PF09335 SNARE associated Golgi protein HQ396_21910 PF05193 Peptidase M16 inactive domain HQ396_21910 PF00675 Insulinase (Peptidase family M16) HQ396_21915 PF04262 Glutamate-cysteine ligase HQ396_21925 PF00501 AMP-binding enzyme HQ396_21935 PF00583 Acetyltransferase (GNAT) family HQ396_21945 PF07728 AAA domain (dynein-related subfamily) HQ396_21945 PF17868 AAA lid domain HQ396_21945 PF12592 Protein of unknown function (DUF3763) HQ396_21950 PF05762 VWA domain containing CoxE-like protein HQ396_21955 PF00563 EAL domain HQ396_21955 PF13188 PAS domain HQ396_21955 PF03707 Bacterial signalling protein N terminal repeat HQ396_21955 PF00990 Diguanylate cyclase, GGDEF domain HQ396_21965 PF00009 Elongation factor Tu GTP binding domain HQ396_21965 PF03144 Elongation factor Tu domain 2 HQ396_21965 PF16658 Class II release factor RF3, C-terminal domain HQ396_21985 PF00583 Acetyltransferase (GNAT) family HQ396_21990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ396_22000 PF04480 Protein of unknown function (DUF559) HQ396_22005 PF03466 LysR substrate binding domain HQ396_22005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_22010 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ396_22015 PF01425 Amidase HQ396_22035 PF00753 Metallo-beta-lactamase superfamily HQ396_22045 PF00270 DEAD/DEAH box helicase HQ396_22045 PF00271 Helicase conserved C-terminal domain HQ396_22050 PF03466 LysR substrate binding domain HQ396_22050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ396_22070 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase