locus-tag class description HQ397_00005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_00005 PF00512 His Kinase A (phospho-acceptor) domain HQ397_00005 PF18415 Histidine kinase receptor ArcB trans-membrane domain HQ397_00005 PF01627 Hpt domain HQ397_00005 PF00989 PAS fold HQ397_00005 PF00072 Response regulator receiver domain HQ397_00010 PF01966 HD domain HQ397_00010 PF13286 Phosphohydrolase-associated domain HQ397_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_00020 PF00512 His Kinase A (phospho-acceptor) domain HQ397_00020 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ397_00020 PF00072 Response regulator receiver domain HQ397_00025 PF03707 Bacterial signalling protein N terminal repeat HQ397_00025 PF00990 Diguanylate cyclase, GGDEF domain HQ397_00025 PF00563 EAL domain HQ397_00035 PF02357 Transcription termination factor nusG HQ397_00040 PF03180 NLPA lipoprotein HQ397_00045 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_00050 PF09383 NIL domain HQ397_00050 PF00005 ABC transporter HQ397_00060 PF00480 ROK family HQ397_00065 PF08331 Domain of unknown function (DUF1730) HQ397_00070 PF01256 Carbohydrate kinase HQ397_00070 PF03853 YjeF-related protein N-terminus HQ397_00075 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HQ397_00080 PF01520 N-acetylmuramoyl-L-alanine amidase HQ397_00085 PF01119 DNA mismatch repair protein, C-terminal domain HQ397_00085 PF08676 MutL C terminal dimerisation domain HQ397_00095 PF17209 Hfq protein HQ397_00100 PF01926 50S ribosome-binding GTPase HQ397_00100 PF13167 GTP-binding GTPase N-terminal HQ397_00100 PF16360 GTP-binding GTPase Middle Region HQ397_00105 PF01145 SPFH domain / Band 7 family HQ397_00105 PF12221 Bacterial membrane protein N terminal HQ397_00110 PF01145 SPFH domain / Band 7 family HQ397_00115 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HQ397_00120 PF00348 Polyprenyl synthetase HQ397_00125 PF00829 Ribosomal prokaryotic L21 protein HQ397_00130 PF01016 Ribosomal L27 protein HQ397_00135 PF01926 50S ribosome-binding GTPase HQ397_00135 PF01018 GTP1/OBG HQ397_00140 PF07670 Nucleoside recognition HQ397_00145 PF13193 AMP-binding enzyme C-terminal domain HQ397_00145 PF00501 AMP-binding enzyme HQ397_00165 PF00296 Luciferase-like monooxygenase HQ397_00175 PF00149 Calcineurin-like phosphoesterase HQ397_00180 PF04379 ApaG domain HQ397_00185 PF00398 Ribosomal RNA adenine dimethylase HQ397_00190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HQ397_00195 PF09312 SurA N-terminal domain HQ397_00195 PF00639 PPIC-type PPIASE domain HQ397_00200 PF03968 OstA-like protein HQ397_00200 PF04453 LPS transport system D HQ397_00205 PF01636 Phosphotransferase enzyme family HQ397_00210 PF00483 Nucleotidyl transferase HQ397_00215 PF05099 Tellurite resistance protein TerB HQ397_00215 PF00226 DnaJ domain HQ397_00220 PF00860 Permease family HQ397_00230 PF00005 ABC transporter HQ397_00230 PF12848 ABC transporter HQ397_00250 PF01464 Transglycosylase SLT domain HQ397_00265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_00265 PF03466 LysR substrate binding domain HQ397_00270 PF01048 Phosphorylase superfamily HQ397_00275 PF07670 Nucleoside recognition HQ397_00275 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_00275 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_00280 PF01791 DeoC/LacD family aldolase HQ397_00290 PF01370 NAD dependent epimerase/dehydratase family HQ397_00300 PF00005 ABC transporter HQ397_00305 PF01032 FecCD transport family HQ397_00315 PF06228 Haem utilisation ChuX/HutX HQ397_00320 PF01243 Pyridoxamine 5'-phosphate oxidase HQ397_00340 PF07715 TonB-dependent Receptor Plug Domain HQ397_00340 PF00593 TonB dependent receptor HQ397_00345 PF12832 MFS_1 like family HQ397_00350 PF13443 Cro/C1-type HTH DNA-binding domain HQ397_00365 PF08329 Chitinase A, N-terminal domain HQ397_00365 PF00704 Glycosyl hydrolases family 18 HQ397_00370 PF12561 ToxR activated gene A lipoprotein domain HQ397_00370 PF17945 Beta/Gamma crystallin HQ397_00375 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ397_00375 PF18416 N-acetylglucosamine binding protein domain 2 HQ397_00380 PF13847 Methyltransferase domain HQ397_00385 PF13545 Crp-like helix-turn-helix domain HQ397_00385 PF00027 Cyclic nucleotide-binding domain HQ397_00390 PF02566 OsmC-like protein HQ397_00405 PF00485 Phosphoribulokinase / Uridine kinase family HQ397_00410 PF00893 Small Multidrug Resistance protein HQ397_00415 PF00892 EamA-like transporter family HQ397_00420 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HQ397_00425 PF01522 Polysaccharide deacetylase HQ397_00430 PF02911 Formyl transferase, C-terminal domain HQ397_00430 PF00551 Formyl transferase HQ397_00430 PF01370 NAD dependent epimerase/dehydratase family HQ397_00435 PF00535 Glycosyl transferase family 2 HQ397_00440 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ397_00445 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ397_00445 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ397_00445 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ397_00450 PF06794 Uncharacterised protein family (UPF0270) HQ397_00455 PF00360 Phytochrome region HQ397_00455 PF00990 Diguanylate cyclase, GGDEF domain HQ397_00455 PF01590 GAF domain HQ397_00455 PF00563 EAL domain HQ397_00460 PF00561 alpha/beta hydrolase fold HQ397_00465 PF01584 CheW-like domain HQ397_00465 PF00072 Response regulator receiver domain HQ397_00475 PF09526 Probable metal-binding protein (DUF2387) HQ397_00480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_00485 PF04102 SlyX HQ397_00495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_00495 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ397_00500 PF02954 Bacterial regulatory protein, Fis family HQ397_00500 PF00072 Response regulator receiver domain HQ397_00500 PF00158 Sigma-54 interaction domain HQ397_00520 PF02872 5'-nucleotidase, C-terminal domain HQ397_00520 PF00149 Calcineurin-like phosphoesterase HQ397_00525 PF12792 CSS motif domain associated with EAL HQ397_00525 PF00563 EAL domain HQ397_00535 PF00772 DnaB-like helicase N terminal domain HQ397_00535 PF03796 DnaB-like helicase C terminal domain HQ397_00540 PF01168 Alanine racemase, N-terminal domain HQ397_00540 PF00842 Alanine racemase, C-terminal domain HQ397_00545 PF12838 4Fe-4S dicluster domain HQ397_00550 PF01136 Peptidase family U32 HQ397_00550 PF16325 Peptidase family U32 C-terminal domain HQ397_00555 PF00563 EAL domain HQ397_00555 PF01590 GAF domain HQ397_00555 PF00990 Diguanylate cyclase, GGDEF domain HQ397_00555 PF00989 PAS fold HQ397_00580 PF00266 Aminotransferase class-V HQ397_00585 PF01339 CheB methylesterase HQ397_00585 PF00072 Response regulator receiver domain HQ397_00590 PF03975 CheD chemotactic sensory transduction HQ397_00595 PF01739 CheR methyltransferase, SAM binding domain HQ397_00595 PF03705 CheR methyltransferase, all-alpha domain HQ397_00600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_00600 PF02203 Tar ligand binding domain homologue HQ397_00600 PF00672 HAMP domain HQ397_00605 PF01584 CheW-like domain HQ397_00610 PF12729 Four helix bundle sensory module for signal transduction HQ397_00610 PF00672 HAMP domain HQ397_00610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_00615 PF02895 Signal transducing histidine kinase, homodimeric domain HQ397_00615 PF01584 CheW-like domain HQ397_00615 PF01627 Hpt domain HQ397_00615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_00615 PF07194 P2 response regulator binding domain HQ397_00625 PF00072 Response regulator receiver domain HQ397_00630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_00630 PF02743 Cache domain HQ397_00630 PF00672 HAMP domain HQ397_00635 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ397_00635 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ397_00640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_00640 PF03466 LysR substrate binding domain HQ397_00645 PF01810 LysE type translocator HQ397_00650 PF12392 Collagenase HQ397_00650 PF01136 Peptidase family U32 HQ397_00660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ397_00660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ397_00675 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HQ397_00700 PF00106 short chain dehydrogenase HQ397_00705 PF03573 outer membrane porin, OprD family HQ397_00710 PF00672 HAMP domain HQ397_00710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_00710 PF02743 Cache domain HQ397_00715 PF00892 EamA-like transporter family HQ397_00745 PF01817 Chorismate mutase type II HQ397_00745 PF00800 Prephenate dehydratase HQ397_00775 PF08349 Protein of unknown function (DUF1722) HQ397_00780 PF13411 MerR HTH family regulatory protein HQ397_00785 PF00875 DNA photolyase HQ397_00785 PF03441 FAD binding domain of DNA photolyase HQ397_00795 PF00106 short chain dehydrogenase HQ397_00835 PF00210 Ferritin-like domain HQ397_00840 PF03063 Prismane/CO dehydrogenase family HQ397_00845 PF00042 Globin HQ397_00845 PF00970 Oxidoreductase FAD-binding domain HQ397_00845 PF00175 Oxidoreductase NAD-binding domain HQ397_00850 PF16363 GDP-mannose 4,6 dehydratase HQ397_00855 PF06965 Na+/H+ antiporter 1 HQ397_00855 PF13462 Thioredoxin HQ397_00865 PF08479 POTRA domain, ShlB-type HQ397_00865 PF17287 POTRA domain HQ397_00865 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HQ397_00870 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HQ397_00870 PF17287 POTRA domain HQ397_00870 PF08479 POTRA domain, ShlB-type HQ397_00875 PF05860 haemagglutination activity domain HQ397_00875 PF05594 Haemagluttinin repeat HQ397_00875 PF13332 Hemagglutinin repeat HQ397_00875 PF14436 Bacterial EndoU nuclease HQ397_00875 PF04829 Pre-toxin domain with VENN motif HQ397_00880 PF05594 Haemagluttinin repeat HQ397_00880 PF13332 Hemagglutinin repeat HQ397_00880 PF04829 Pre-toxin domain with VENN motif HQ397_00930 PF03472 Autoinducer binding domain HQ397_00930 PF00196 Bacterial regulatory proteins, luxR family HQ397_00935 PF05638 Type VI secretion system effector, Hcp HQ397_00940 PF04717 Type VI secretion system, phage-baseplate injector HQ397_00945 PF13503 Domain of unknown function (DUF4123) HQ397_00970 PF03466 LysR substrate binding domain HQ397_00970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_00975 PF03306 Alpha-acetolactate decarboxylase HQ397_00980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_00980 PF00205 Thiamine pyrophosphate enzyme, central domain HQ397_00980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ397_00985 PF01965 DJ-1/PfpI family HQ397_00990 PF02558 Ketopantoate reductase PanE/ApbA HQ397_00990 PF08546 Ketopantoate reductase PanE/ApbA C terminal HQ397_00995 PF04461 Protein of unknown function (DUF520) HQ397_01000 PF03502 Nucleoside-specific channel-forming protein, Tsx HQ397_01005 PF07690 Major Facilitator Superfamily HQ397_01015 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ397_01025 PF05175 Methyltransferase small domain HQ397_01030 PF01722 BolA-like protein HQ397_01035 PF11973 NQRA C-terminal domain HQ397_01035 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HQ397_01040 PF03116 NQR2, RnfD, RnfE family HQ397_01045 PF04205 FMN-binding domain HQ397_01050 PF02508 Rnf-Nqr subunit, membrane protein HQ397_01055 PF02508 Rnf-Nqr subunit, membrane protein HQ397_01060 PF00175 Oxidoreductase NAD-binding domain HQ397_01060 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_01060 PF00970 Oxidoreductase FAD-binding domain HQ397_01065 PF02424 ApbE family HQ397_01080 PF11798 IMS family HHH motif HQ397_01080 PF11799 impB/mucB/samB family C-terminal domain HQ397_01080 PF00817 impB/mucB/samB family HQ397_01085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_01085 PF00672 HAMP domain HQ397_01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_01090 PF03466 LysR substrate binding domain HQ397_01100 PF04241 Protein of unknown function (DUF423) HQ397_01105 PF01728 FtsJ-like methyltransferase HQ397_01105 PF18125 RlmM ferredoxin-like domain HQ397_01120 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ397_01120 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ397_01125 PF03641 Possible lysine decarboxylase HQ397_01125 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HQ397_01125 PF11892 Domain of unknown function (DUF3412) HQ397_01130 PF00990 Diguanylate cyclase, GGDEF domain HQ397_01140 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HQ397_01140 PF14489 QueF-like protein HQ397_01145 PF07348 Syd protein (SUKH-2) HQ397_01150 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ397_01175 PF04287 tRNA pseudouridine synthase C HQ397_01180 PF00849 RNA pseudouridylate synthase HQ397_01185 PF00258 Flavodoxin HQ397_01190 PF02264 LamB porin HQ397_01195 PF07148 Maltose operon periplasmic protein precursor (MalM) HQ397_01200 PF00367 phosphotransferase system, EIIB HQ397_01200 PF02378 Phosphotransferase system, EIIC HQ397_01205 PF11944 Protein of unknown function (DUF3461) HQ397_01210 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HQ397_01210 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_01210 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_01215 PF01842 ACT domain HQ397_01215 PF08335 GlnD PII-uridylyltransferase HQ397_01215 PF01966 HD domain HQ397_01215 PF01909 Nucleotidyltransferase domain HQ397_01220 PF00557 Metallopeptidase family M24 HQ397_01225 PF00318 Ribosomal protein S2 HQ397_01230 PF00889 Elongation factor TS HQ397_01235 PF00696 Amino acid kinase family HQ397_01240 PF01765 Ribosome recycling factor HQ397_01245 PF01255 Putative undecaprenyl diphosphate synthase HQ397_01255 PF13288 DXP reductoisomerase C-terminal domain HQ397_01255 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HQ397_01255 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HQ397_01260 PF02163 Peptidase family M50 HQ397_01260 PF17820 PDZ domain HQ397_01265 PF07244 Surface antigen variable number repeat HQ397_01265 PF01103 Surface antigen HQ397_01270 PF03938 Outer membrane protein (OmpH-like) HQ397_01275 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HQ397_01275 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_01280 PF07977 FabA-like domain HQ397_01285 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HQ397_01285 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_01290 PF02684 Lipid-A-disaccharide synthetase HQ397_01295 PF01351 Ribonuclease HII HQ397_01300 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ397_01300 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ397_01300 PF14579 Helix-hairpin-helix motif HQ397_01300 PF02811 PHP domain HQ397_01300 PF01336 OB-fold nucleic acid binding domain HQ397_01305 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HQ397_01320 PF13520 Amino acid permease HQ397_01325 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HQ397_01325 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HQ397_01325 PF01276 Orn/Lys/Arg decarboxylase, major domain HQ397_01330 PF08543 Phosphomethylpyrimidine kinase HQ397_01340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_01340 PF03466 LysR substrate binding domain HQ397_01350 PF12706 Beta-lactamase superfamily domain HQ397_01355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_01355 PF03466 LysR substrate binding domain HQ397_01360 PF13520 Amino acid permease HQ397_01385 PF01431 Peptidase family M13 HQ397_01385 PF05649 Peptidase family M13 HQ397_01390 PF11734 TilS substrate C-terminal domain HQ397_01390 PF09179 TilS substrate binding domain HQ397_01390 PF01171 PP-loop family HQ397_01395 PF00990 Diguanylate cyclase, GGDEF domain HQ397_01400 PF02080 TrkA-C domain HQ397_01400 PF00999 Sodium/hydrogen exchanger family HQ397_01400 PF02254 TrkA-N domain HQ397_01425 PF00072 Response regulator receiver domain HQ397_01425 PF00196 Bacterial regulatory proteins, luxR family HQ397_01435 PF00128 Alpha amylase, catalytic domain HQ397_01450 PF00535 Glycosyl transferase family 2 HQ397_01465 PF01471 Putative peptidoglycan binding domain HQ397_01465 PF03734 L,D-transpeptidase catalytic domain HQ397_01470 PF05951 Bacterial protein of unknown function (DUF882) HQ397_01480 PF03458 UPF0126 domain HQ397_01495 PF04354 ZipA, C-terminal FtsZ-binding domain HQ397_01500 PF00533 BRCA1 C Terminus (BRCT) domain HQ397_01500 PF01653 NAD-dependent DNA ligase adenylation domain HQ397_01500 PF03120 NAD-dependent DNA ligase OB-fold domain HQ397_01500 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HQ397_01500 PF12826 Helix-hairpin-helix motif HQ397_01510 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ397_01510 PF03477 ATP cone domain HQ397_01520 PF01679 Proteolipid membrane potential modulator HQ397_01545 PF00529 HlyD membrane-fusion protein of T1SS HQ397_01545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_01565 PF00390 Malic enzyme, N-terminal domain HQ397_01565 PF03949 Malic enzyme, NAD binding domain HQ397_01575 PF12431 Transcriptional regulator HQ397_01575 PF00072 Response regulator receiver domain HQ397_01590 PF00892 EamA-like transporter family HQ397_01605 PF01590 GAF domain HQ397_01605 PF02954 Bacterial regulatory protein, Fis family HQ397_01605 PF00158 Sigma-54 interaction domain HQ397_01610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_01610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_01610 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_01615 PF02515 CoA-transferase family III HQ397_01620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_01625 PF00072 Response regulator receiver domain HQ397_01625 PF00486 Transcriptional regulatory protein, C terminal HQ397_01635 PF12849 PBP superfamily domain HQ397_01640 PF01435 Peptidase family M48 HQ397_01650 PF00480 ROK family HQ397_01660 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ397_01660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_01665 PF00005 ABC transporter HQ397_01680 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_01685 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_01695 PF00005 ABC transporter HQ397_01705 PF00293 NUDIX domain HQ397_01715 PF08534 Redoxin HQ397_01720 PF01699 Sodium/calcium exchanger protein HQ397_01725 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ397_01725 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ397_01730 PF01235 Sodium:alanine symporter family HQ397_01740 PF00860 Permease family HQ397_01745 PF00072 Response regulator receiver domain HQ397_01745 PF00990 Diguanylate cyclase, GGDEF domain HQ397_01750 PF10692 Protein of unknown function (DUF2498) HQ397_01755 PF01554 MatE HQ397_01760 PF12833 Helix-turn-helix domain HQ397_01765 PF00390 Malic enzyme, N-terminal domain HQ397_01765 PF03949 Malic enzyme, NAD binding domain HQ397_01770 PF00691 OmpA family HQ397_01770 PF01389 OmpA-like transmembrane domain HQ397_01775 PF01389 OmpA-like transmembrane domain HQ397_01775 PF00691 OmpA family HQ397_01780 PF01389 OmpA-like transmembrane domain HQ397_01780 PF00691 OmpA family HQ397_01795 PF00209 Sodium:neurotransmitter symporter family HQ397_01800 PF01734 Patatin-like phospholipase HQ397_01805 PF00990 Diguanylate cyclase, GGDEF domain HQ397_01810 PF00529 HlyD membrane-fusion protein of T1SS HQ397_01810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_01825 PF11842 Domain of unknown function (DUF3362) HQ397_01825 PF04055 Radical SAM superfamily HQ397_01825 PF08497 Radical SAM N-terminal HQ397_01860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ397_01870 PF02075 Crossover junction endodeoxyribonuclease RuvC HQ397_01875 PF00230 Major intrinsic protein HQ397_01885 PF00128 Alpha amylase, catalytic domain HQ397_01890 PF01551 Peptidase family M23 HQ397_01915 PF01842 ACT domain HQ397_01915 PF00551 Formyl transferase HQ397_01920 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ397_01930 PF00085 Thioredoxin HQ397_01935 PF01648 4'-phosphopantetheinyl transferase superfamily HQ397_01940 PF00877 NlpC/P60 family HQ397_01960 PF17969 L,D-transpeptidase C-terminal domain HQ397_01960 PF01476 LysM domain HQ397_01960 PF03734 L,D-transpeptidase catalytic domain HQ397_01970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_01970 PF03466 LysR substrate binding domain HQ397_01975 PF02634 FdhD/NarQ family HQ397_01980 PF00384 Molybdopterin oxidoreductase HQ397_02000 PF02342 TerD domain HQ397_02030 PF00005 ABC transporter HQ397_02040 PF03781 Sulfatase-modifying factor enzyme 1 HQ397_02065 PF00440 Bacterial regulatory proteins, tetR family HQ397_02070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_02070 PF09317 Domain of unknown function (DUF1974) HQ397_02070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_02070 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_02075 PF00873 AcrB/AcrD/AcrF family HQ397_02085 PF00224 Pyruvate kinase, barrel domain HQ397_02085 PF02887 Pyruvate kinase, alpha/beta domain HQ397_02090 PF01418 Helix-turn-helix domain, rpiR family HQ397_02090 PF01380 SIS domain HQ397_02095 PF02685 Glucokinase HQ397_02100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_02105 PF00072 Response regulator receiver domain HQ397_02105 PF00486 Transcriptional regulatory protein, C terminal HQ397_02115 PF00072 Response regulator receiver domain HQ397_02125 PF02049 Flagellar hook-basal body complex protein FliE HQ397_02130 PF01514 Secretory protein of YscJ/FliF family HQ397_02130 PF08345 Flagellar M-ring protein C-terminal HQ397_02135 PF01706 FliG C-terminal domain HQ397_02135 PF14841 FliG middle domain HQ397_02135 PF14842 FliG N-terminal domain HQ397_02145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_02145 PF18269 T3SS EscN ATPase C-terminal domain HQ397_02165 PF02154 Flagellar motor switch protein FliM HQ397_02165 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ397_02170 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ397_02175 PF04347 Flagellar biosynthesis protein, FliO HQ397_02180 PF00813 FliP family HQ397_02185 PF01313 Bacterial export proteins, family 3 HQ397_02190 PF01311 Bacterial export proteins, family 1 HQ397_02195 PF01312 FlhB HrpN YscU SpaS Family HQ397_02200 PF00771 FHIPEP family HQ397_02205 PF00448 SRP54-type protein, GTPase domain HQ397_02210 PF10609 NUBPL iron-transfer P-loop NTPase HQ397_02215 PF04545 Sigma-70, region 4 HQ397_02215 PF04542 Sigma-70 region 2 HQ397_02215 PF04539 Sigma-70 region 3 HQ397_02220 PF00072 Response regulator receiver domain HQ397_02225 PF04344 Chemotaxis phosphatase, CheZ HQ397_02230 PF01584 CheW-like domain HQ397_02230 PF02895 Signal transducing histidine kinase, homodimeric domain HQ397_02230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_02230 PF01627 Hpt domain HQ397_02230 PF00072 Response regulator receiver domain HQ397_02240 PF01618 MotA/TolQ/ExbB proton channel family HQ397_02245 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ397_02245 PF00691 OmpA family HQ397_02260 PF01584 CheW-like domain HQ397_02270 PF00005 ABC transporter HQ397_02280 PF01578 Cytochrome C assembly protein HQ397_02285 PF04995 Heme exporter protein D (CcmD) HQ397_02290 PF03100 CcmE HQ397_02295 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ397_02295 PF01578 Cytochrome C assembly protein HQ397_02300 PF08534 Redoxin HQ397_02305 PF03918 Cytochrome C biogenesis protein HQ397_02315 PF04333 MlaA lipoprotein HQ397_02320 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ397_02320 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ397_02325 PF00462 Glutaredoxin HQ397_02330 PF01189 16S rRNA methyltransferase RsmB/F HQ397_02330 PF01029 NusB family HQ397_02345 PF01243 Pyridoxamine 5'-phosphate oxidase HQ397_02345 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HQ397_02350 PF02798 Glutathione S-transferase, N-terminal domain HQ397_02360 PF13508 Acetyltransferase (GNAT) domain HQ397_02370 PF08007 Cupin superfamily protein HQ397_02375 PF00206 Lyase HQ397_02375 PF08328 Adenylosuccinate lyase C-terminal HQ397_02380 PF04356 Protein of unknown function (DUF489) HQ397_02390 PF00293 NUDIX domain HQ397_02405 PF02378 Phosphotransferase system, EIIC HQ397_02405 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ397_02405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_02410 PF07690 Major Facilitator Superfamily HQ397_02420 PF09013 YopH, N-terminal HQ397_02425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ397_02425 PF02378 Phosphotransferase system, EIIC HQ397_02425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_02455 PF00583 Acetyltransferase (GNAT) family HQ397_02475 PF00376 MerR family regulatory protein HQ397_02475 PF09278 MerR, DNA binding HQ397_02480 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_02480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ397_02485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_02485 PF00356 Bacterial regulatory proteins, lacI family HQ397_02490 PF00367 phosphotransferase system, EIIB HQ397_02490 PF02378 Phosphotransferase system, EIIC HQ397_02495 PF00155 Aminotransferase class I and II HQ397_02525 PF01238 Phosphomannose isomerase type I HQ397_02535 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ397_02545 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_02550 PF02447 GntP family permease HQ397_02555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_02555 PF03466 LysR substrate binding domain HQ397_02560 PF00480 ROK family HQ397_02565 PF17128 Domain of unknown function (DUF5107) HQ397_02565 PF13181 Tetratricopeptide repeat HQ397_02570 PF00083 Sugar (and other) transporter HQ397_02585 PF01668 SmpB protein HQ397_02590 PF03364 Polyketide cyclase / dehydrase and lipid transport HQ397_02595 PF03658 RnfH family Ubiquitin HQ397_02600 PF13460 NAD(P)H-binding HQ397_02605 PF04355 SmpA / OmlA family HQ397_02610 PF00465 Iron-containing alcohol dehydrogenase HQ397_02615 PF01048 Phosphorylase superfamily HQ397_02620 PF00849 RNA pseudouridylate synthase HQ397_02625 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ397_02640 PF07509 Protein of unknown function (DUF1523) HQ397_02645 PF00672 HAMP domain HQ397_02645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_02650 PF01810 LysE type translocator HQ397_02660 PF00999 Sodium/hydrogen exchanger family HQ397_02660 PF02080 TrkA-C domain HQ397_02660 PF03471 Transporter associated domain HQ397_02680 PF02557 D-alanyl-D-alanine carboxypeptidase HQ397_02685 PF01546 Peptidase family M20/M25/M40 HQ397_02685 PF07687 Peptidase dimerisation domain HQ397_02690 PF03960 ArsC family HQ397_02695 PF03466 LysR substrate binding domain HQ397_02695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_02705 PF03606 C4-dicarboxylate anaerobic carrier HQ397_02720 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ397_02725 PF01336 OB-fold nucleic acid binding domain HQ397_02725 PF00152 tRNA synthetases class II (D, K and N) HQ397_02745 PF06968 Biotin and Thiamin Synthesis associated domain HQ397_02745 PF04055 Radical SAM superfamily HQ397_02750 PF00155 Aminotransferase class I and II HQ397_02755 PF08241 Methyltransferase domain HQ397_02755 PF12697 Alpha/beta hydrolase family HQ397_02765 PF01435 Peptidase family M48 HQ397_02770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_02770 PF08447 PAS fold HQ397_02770 PF13426 PAS domain HQ397_02775 PF03476 MOSC N-terminal beta barrel domain HQ397_02775 PF03476 MOSC N-terminal beta barrel domain HQ397_02775 PF03473 MOSC domain HQ397_02775 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_02775 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_02775 PF03473 MOSC domain HQ397_02780 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ397_02780 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_02780 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ397_02785 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ397_02785 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ397_02785 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ397_02785 PF10371 Domain of unknown function HQ397_02785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_02790 PF01804 Penicillin amidase HQ397_02795 PF12833 Helix-turn-helix domain HQ397_02795 PF07883 Cupin domain HQ397_02810 PF01554 MatE HQ397_02830 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_02840 PF00465 Iron-containing alcohol dehydrogenase HQ397_02850 PF08359 YsiA-like protein, C-terminal region HQ397_02850 PF00440 Bacterial regulatory proteins, tetR family HQ397_02855 PF00171 Aldehyde dehydrogenase family HQ397_02865 PF00877 NlpC/P60 family HQ397_02870 PF12563 Hemolytic toxin N terminal HQ397_02870 PF07968 Leukocidin/Hemolysin toxin family HQ397_02880 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ397_02880 PF00578 AhpC/TSA family HQ397_02900 PF08003 Protein of unknown function (DUF1698) HQ397_02905 PF13649 Methyltransferase domain HQ397_02910 PF01904 Protein of unknown function DUF72 HQ397_02915 PF02938 GAD domain HQ397_02915 PF00152 tRNA synthetases class II (D, K and N) HQ397_02915 PF01336 OB-fold nucleic acid binding domain HQ397_02920 PF01709 Transcriptional regulator HQ397_02925 PF08019 Phosphoethanolamine transferase EptA/EptB HQ397_02925 PF00884 Sulfatase HQ397_02930 PF01047 MarR family HQ397_02930 PF00480 ROK family HQ397_02935 PF01979 Amidohydrolase family HQ397_02940 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HQ397_02945 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ397_02945 PF00367 phosphotransferase system, EIIB HQ397_02945 PF02378 Phosphotransferase system, EIIC HQ397_02950 PF03173 Putative carbohydrate binding domain HQ397_02950 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HQ397_02950 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ397_02950 PF02838 Glycosyl hydrolase family 20, domain 2 HQ397_02960 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HQ397_02960 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ397_02965 PF01475 Ferric uptake regulator family HQ397_02975 PF00258 Flavodoxin HQ397_02980 PF01402 Ribbon-helix-helix protein, copG family HQ397_02990 PF12697 Alpha/beta hydrolase family HQ397_02995 PF03925 SeqA protein C-terminal domain HQ397_02995 PF17206 SeqA protein N-terminal domain HQ397_03000 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ397_03000 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ397_03000 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ397_03000 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ397_03010 PF01047 MarR family HQ397_03015 PF13406 Transglycosylase SLT domain HQ397_03020 PF01066 CDP-alcohol phosphatidyltransferase HQ397_03025 PF00005 ABC transporter HQ397_03035 PF13416 Bacterial extracellular solute-binding protein HQ397_03040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_03040 PF00403 Heavy-metal-associated domain HQ397_03040 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_03045 PF02627 Carboxymuconolactone decarboxylase family HQ397_03055 PF01625 Peptide methionine sulfoxide reductase HQ397_03070 PF01103 Surface antigen HQ397_03070 PF07244 Surface antigen variable number repeat HQ397_03070 PF17243 POTRA domain TamA domain 1 HQ397_03095 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ397_03105 PF01464 Transglycosylase SLT domain HQ397_03105 PF14718 Soluble lytic murein transglycosylase L domain HQ397_03110 PF00356 Bacterial regulatory proteins, lacI family HQ397_03120 PF03061 Thioesterase superfamily HQ397_03130 PF03372 Endonuclease/Exonuclease/phosphatase family HQ397_03135 PF01476 LysM domain HQ397_03135 PF01464 Transglycosylase SLT domain HQ397_03140 PF16123 Hydroxyacylglutathione hydrolase C-terminus HQ397_03140 PF00753 Metallo-beta-lactamase superfamily HQ397_03145 PF08241 Methyltransferase domain HQ397_03150 PF00075 RNase H HQ397_03155 PF00929 Exonuclease HQ397_03165 PF02541 Ppx/GppA phosphatase family HQ397_03170 PF13089 Polyphosphate kinase N-terminal domain HQ397_03170 PF13090 Polyphosphate kinase C-terminal domain 2 HQ397_03170 PF02503 Polyphosphate kinase middle domain HQ397_03170 PF17941 Polyphosphate kinase C-terminal domain 1 HQ397_03175 PF01842 ACT domain HQ397_03185 PF06490 Flagellar regulatory protein FleQ HQ397_03185 PF02954 Bacterial regulatory protein, Fis family HQ397_03185 PF00158 Sigma-54 interaction domain HQ397_03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_03190 PF00512 His Kinase A (phospho-acceptor) domain HQ397_03190 PF13188 PAS domain HQ397_03195 PF02954 Bacterial regulatory protein, Fis family HQ397_03195 PF00072 Response regulator receiver domain HQ397_03195 PF00158 Sigma-54 interaction domain HQ397_03200 PF01784 NIF3 (NGG1p interacting factor 3) HQ397_03205 PF00551 Formyl transferase HQ397_03210 PF00586 AIR synthase related protein, N-terminal domain HQ397_03210 PF02769 AIR synthase related protein, C-terminal domain HQ397_03225 PF00308 Bacterial dnaA protein HQ397_03230 PF00463 Isocitrate lyase family HQ397_03235 PF01274 Malate synthase HQ397_03250 PF14437 MafB19-like deaminase HQ397_03255 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_03260 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_03265 PF00005 ABC transporter HQ397_03270 PF01895 PhoU domain HQ397_03275 PF01595 Cyclin M transmembrane N-terminal domain HQ397_03275 PF00571 CBS domain HQ397_03275 PF03471 Transporter associated domain HQ397_03285 PF02310 B12 binding domain HQ397_03285 PF02607 B12 binding domain HQ397_03285 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ397_03285 PF00809 Pterin binding enzyme HQ397_03285 PF02574 Homocysteine S-methyltransferase HQ397_03290 PF13520 Amino acid permease HQ397_03295 PF04116 Fatty acid hydroxylase superfamily HQ397_03305 PF00005 ABC transporter HQ397_03310 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_03315 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_03320 PF00990 Diguanylate cyclase, GGDEF domain HQ397_03325 PF07690 Major Facilitator Superfamily HQ397_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_03330 PF05231 MASE1 HQ397_03330 PF07730 Histidine kinase HQ397_03335 PF00196 Bacterial regulatory proteins, luxR family HQ397_03335 PF00072 Response regulator receiver domain HQ397_03340 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ397_03340 PF14760 Rnk N-terminus HQ397_03355 PF00245 Alkaline phosphatase HQ397_03360 PF00245 Alkaline phosphatase HQ397_03365 PF01926 50S ribosome-binding GTPase HQ397_03370 PF07690 Major Facilitator Superfamily HQ397_03375 PF00850 Histone deacetylase domain HQ397_03385 PF06733 DEAD_2 HQ397_03385 PF13307 Helicase C-terminal domain HQ397_03390 PF13609 Gram-negative porin HQ397_03400 PF00155 Aminotransferase class I and II HQ397_03405 PF00899 ThiF family HQ397_03410 PF03453 MoeA N-terminal region (domain I and II) HQ397_03410 PF03454 MoeA C-terminal region (domain IV) HQ397_03410 PF00994 Probable molybdopterin binding domain HQ397_03415 PF01227 GTP cyclohydrolase I HQ397_03420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_03420 PF00672 HAMP domain HQ397_03420 PF17200 Single Cache domain 2 HQ397_03425 PF01268 Formate--tetrahydrofolate ligase HQ397_03435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_03435 PF03466 LysR substrate binding domain HQ397_03440 PF04264 YceI-like domain HQ397_03465 PF01546 Peptidase family M20/M25/M40 HQ397_03465 PF07687 Peptidase dimerisation domain HQ397_03475 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ397_03475 PF17944 Arginine decarboxylase C-terminal helical extension HQ397_03475 PF17810 Arginine decarboxylase helical bundle domain HQ397_03495 PF00672 HAMP domain HQ397_03495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_03505 PF01042 Endoribonuclease L-PSP HQ397_03510 PF03313 Serine dehydratase alpha chain HQ397_03515 PF13309 HTH domain HQ397_03515 PF08348 YheO-like PAS domain HQ397_03520 PF00300 Histidine phosphatase superfamily (branch 1) HQ397_03525 PF01844 HNH endonuclease HQ397_03535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_03545 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HQ397_03545 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HQ397_03550 PF00849 RNA pseudouridylate synthase HQ397_03550 PF01479 S4 domain HQ397_03555 PF09009 Exotoxin A catalytic HQ397_03555 PF09102 Exotoxin A, targeting HQ397_03555 PF09101 Exotoxin A binding HQ397_03560 PF07690 Major Facilitator Superfamily HQ397_03570 PF03466 LysR substrate binding domain HQ397_03570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_03575 PF07690 Major Facilitator Superfamily HQ397_03585 PF10689 Protein of unknown function (DUF2496) HQ397_03590 PF03061 Thioesterase superfamily HQ397_03600 PF04391 Protein of unknown function (DUF533) HQ397_03610 PF00392 Bacterial regulatory proteins, gntR family HQ397_03610 PF00155 Aminotransferase class I and II HQ397_03615 PF01654 Cytochrome bd terminal oxidase subunit I HQ397_03620 PF02322 Cytochrome bd terminal oxidase subunit II HQ397_03630 PF07690 Major Facilitator Superfamily HQ397_03635 PF00248 Aldo/keto reductase family HQ397_03655 PF03466 LysR substrate binding domain HQ397_03655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_03660 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HQ397_03660 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ397_03665 PF00230 Major intrinsic protein HQ397_03670 PF07690 Major Facilitator Superfamily HQ397_03675 PF00455 DeoR C terminal sensor domain HQ397_03675 PF08220 DeoR-like helix-turn-helix domain HQ397_03685 PF01266 FAD dependent oxidoreductase HQ397_03685 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HQ397_03690 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ397_03695 PF00793 DAHP synthetase I family HQ397_03700 PF01817 Chorismate mutase type II HQ397_03700 PF02153 Prephenate dehydrogenase HQ397_03705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_03705 PF03466 LysR substrate binding domain HQ397_03710 PF04219 Protein of unknown function, DUF HQ397_03715 PF03974 Ecotin HQ397_03735 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ397_03735 PF00326 Prolyl oligopeptidase family HQ397_03740 PF00593 TonB dependent receptor HQ397_03740 PF07715 TonB-dependent Receptor Plug Domain HQ397_03750 PF07208 Protein of unknown function (DUF1414) HQ397_03755 PF04245 37-kD nucleoid-associated bacterial protein HQ397_03760 PF01547 Bacterial extracellular solute-binding protein HQ397_03765 PF14785 Maltose transport system permease protein MalF P2 domain HQ397_03765 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_03770 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_03775 PF08402 TOBE domain HQ397_03775 PF00005 ABC transporter HQ397_03780 PF03976 Polyphosphate kinase 2 (PPK2) HQ397_03785 PF00561 alpha/beta hydrolase fold HQ397_03800 PF01206 Sulfurtransferase TusA HQ397_03805 PF13181 Tetratricopeptide repeat HQ397_03805 PF01435 Peptidase family M48 HQ397_03810 PF00578 AhpC/TSA family HQ397_03815 PF03960 ArsC family HQ397_03830 PF04336 Acyl carrier protein phosphodiesterase HQ397_03835 PF01979 Amidohydrolase family HQ397_03840 PF03956 Lysine exporter LysO HQ397_03845 PF00005 ABC transporter HQ397_03850 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_03855 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_03860 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_03870 PF04055 Radical SAM superfamily HQ397_03875 PF03707 Bacterial signalling protein N terminal repeat HQ397_03875 PF00990 Diguanylate cyclase, GGDEF domain HQ397_03875 PF00563 EAL domain HQ397_03880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_03880 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_03890 PF00905 Penicillin binding protein transpeptidase domain HQ397_03890 PF00912 Transglycosylase HQ397_03890 PF06832 Penicillin-Binding Protein C-terminus Family HQ397_03900 PF12167 Arm DNA-binding domain HQ397_03900 PF00589 Phage integrase family HQ397_03955 PF04381 Putative exonuclease, RdgC HQ397_03990 PF12684 PDDEXK-like domain of unknown function (DUF3799) HQ397_03990 PF06630 Enterobacterial exodeoxyribonuclease VIII HQ397_04045 PF00145 C-5 cytosine-specific DNA methylase HQ397_04075 PF05772 NinB protein HQ397_04080 PF00149 Calcineurin-like phosphoesterase HQ397_04280 PF02568 Thiamine biosynthesis protein (ThiI) HQ397_04280 PF02926 THUMP domain HQ397_04290 PF03458 UPF0126 domain HQ397_04295 PF00700 Bacterial flagellin C-terminal helical region HQ397_04295 PF07196 Flagellin hook IN motif HQ397_04295 PF00669 Bacterial flagellin N-terminal helical region HQ397_04300 PF00700 Bacterial flagellin C-terminal helical region HQ397_04300 PF07196 Flagellin hook IN motif HQ397_04300 PF00669 Bacterial flagellin N-terminal helical region HQ397_04310 PF07195 Flagellar hook-associated protein 2 C-terminus HQ397_04310 PF02465 Flagellar hook-associated protein 2 N-terminus HQ397_04310 PF07196 Flagellin hook IN motif HQ397_04315 PF02561 Flagellar protein FliS HQ397_04330 PF01497 Periplasmic binding protein HQ397_04340 PF01048 Phosphorylase superfamily HQ397_04350 PF02535 ZIP Zinc transporter HQ397_04355 PF00672 HAMP domain HQ397_04355 PF12729 Four helix bundle sensory module for signal transduction HQ397_04355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_04360 PF00459 Inositol monophosphatase family HQ397_04370 PF00043 Glutathione S-transferase, C-terminal domain HQ397_04370 PF02798 Glutathione S-transferase, N-terminal domain HQ397_04375 PF07690 Major Facilitator Superfamily HQ397_04385 PF05164 Cell division protein ZapA HQ397_04390 PF03695 Uncharacterised protein family (UPF0149) HQ397_04395 PF01494 FAD binding domain HQ397_04400 PF01494 FAD binding domain HQ397_04405 PF01571 Aminomethyltransferase folate-binding domain HQ397_04405 PF08669 Glycine cleavage T-protein C-terminal barrel domain HQ397_04410 PF01597 Glycine cleavage H-protein HQ397_04415 PF02347 Glycine cleavage system P-protein HQ397_04420 PF01022 Bacterial regulatory protein, arsR family HQ397_04425 PF01758 Sodium Bile acid symporter family HQ397_04430 PF03960 ArsC family HQ397_04435 PF08241 Methyltransferase domain HQ397_04445 PF07690 Major Facilitator Superfamily HQ397_04450 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_04450 PF13192 Thioredoxin domain HQ397_04455 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ397_04455 PF00578 AhpC/TSA family HQ397_04460 PF00571 CBS domain HQ397_04465 PF02547 Queuosine biosynthesis protein HQ397_04470 PF01702 Queuine tRNA-ribosyltransferase HQ397_04475 PF02699 Preprotein translocase subunit HQ397_04485 PF07549 SecD/SecF GG Motif HQ397_04485 PF02355 Protein export membrane protein HQ397_04495 PF13181 Tetratricopeptide repeat HQ397_04495 PF07719 Tetratricopeptide repeat HQ397_04505 PF01136 Peptidase family U32 HQ397_04510 PF02036 SCP-2 sterol transfer family HQ397_04520 PF00588 SpoU rRNA Methylase family HQ397_04525 PF02082 Transcriptional regulator HQ397_04530 PF00266 Aminotransferase class-V HQ397_04535 PF01592 NifU-like N terminal domain HQ397_04540 PF01521 Iron-sulphur cluster biosynthesis HQ397_04545 PF07743 HSCB C-terminal oligomerisation domain HQ397_04550 PF00012 Hsp70 protein HQ397_04555 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_04560 PF12404 Peptidase HQ397_04560 PF00883 Cytosol aminopeptidase family, catalytic domain HQ397_04565 PF12404 Peptidase HQ397_04565 PF00883 Cytosol aminopeptidase family, catalytic domain HQ397_04570 PF00334 Nucleoside diphosphate kinase HQ397_04575 PF04055 Radical SAM superfamily HQ397_04585 PF13464 Domain of unknown function (DUF4115) HQ397_04590 PF04551 GcpE protein HQ397_04595 PF03129 Anticodon binding domain HQ397_04595 PF13393 Histidyl-tRNA synthetase HQ397_04600 PF09976 Tetratricopeptide repeat-like domain HQ397_04610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HQ397_04610 PF01926 50S ribosome-binding GTPase HQ397_04615 PF07191 zinc-ribbons HQ397_04620 PF01464 Transglycosylase SLT domain HQ397_04620 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_04625 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HQ397_04625 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HQ397_04625 PF02769 AIR synthase related protein, C-terminal domain HQ397_04630 PF01966 HD domain HQ397_04645 PF00361 Proton-conducting membrane transporter HQ397_04650 PF00361 Proton-conducting membrane transporter HQ397_04655 PF00361 Proton-conducting membrane transporter HQ397_04655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HQ397_04660 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HQ397_04665 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HQ397_04670 PF12838 4Fe-4S dicluster domain HQ397_04675 PF00146 NADH dehydrogenase HQ397_04680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_04680 PF00384 Molybdopterin oxidoreductase HQ397_04680 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ397_04685 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ397_04685 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ397_04695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ397_04695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ397_04700 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ397_04705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HQ397_04710 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ397_04710 PF00691 OmpA family HQ397_04715 PF01618 MotA/TolQ/ExbB proton channel family HQ397_04735 PF04536 TPM domain HQ397_04745 PF03411 Penicillin-insensitive murein endopeptidase HQ397_04755 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HQ397_04760 PF00248 Aldo/keto reductase family HQ397_04775 PF01212 Beta-eliminating lyase HQ397_04785 PF00072 Response regulator receiver domain HQ397_04790 PF03466 LysR substrate binding domain HQ397_04790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_04800 PF00563 EAL domain HQ397_04800 PF00990 Diguanylate cyclase, GGDEF domain HQ397_04800 PF13188 PAS domain HQ397_04800 PF03707 Bacterial signalling protein N terminal repeat HQ397_04805 PF00881 Nitroreductase family HQ397_04820 PF07690 Major Facilitator Superfamily HQ397_04825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_04825 PF03466 LysR substrate binding domain HQ397_04830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_04830 PF03466 LysR substrate binding domain HQ397_04835 PF00925 GTP cyclohydrolase II HQ397_04840 PF02224 Cytidylate kinase HQ397_04845 PF00575 S1 RNA binding domain HQ397_04850 PF00216 Bacterial DNA-binding protein HQ397_04860 PF18073 Rubredoxin metal binding domain HQ397_04865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ397_04880 PF06508 Queuosine biosynthesis protein QueC HQ397_04885 PF04055 Radical SAM superfamily HQ397_04890 PF12843 Putative quorum-sensing-regulated virulence factor HQ397_04895 PF01923 Cobalamin adenosyltransferase HQ397_04900 PF00816 H-NS histone family HQ397_04905 PF03553 Na+/H+ antiporter family HQ397_04910 PF00265 Thymidine kinase HQ397_04920 PF10722 Putative bacterial sensory transduction regulator HQ397_04930 PF05638 Type VI secretion system effector, Hcp HQ397_04935 PF04717 Type VI secretion system, phage-baseplate injector HQ397_04945 PF05593 RHS Repeat HQ397_04945 PF03527 RHS protein HQ397_04965 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath HQ397_04975 PF05947 Type VI secretion system, TssF HQ397_04995 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE HQ397_05005 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_05005 PF07724 AAA domain (Cdc48 subfamily) HQ397_05005 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_05005 PF17871 AAA lid domain HQ397_05010 PF02954 Bacterial regulatory protein, Fis family HQ397_05010 PF00158 Sigma-54 interaction domain HQ397_05025 PF06761 Intracellular multiplication and human macrophage-killing HQ397_05025 PF14331 ImcF-related N-terminal domain HQ397_05025 PF06744 Type VI secretion protein IcmF C-terminal HQ397_05040 PF04717 Type VI secretion system, phage-baseplate injector HQ397_05070 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HQ397_05070 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HQ397_05080 PF00313 'Cold-shock' DNA-binding domain HQ397_05085 PF02617 ATP-dependent Clp protease adaptor protein ClpS HQ397_05095 PF01176 Translation initiation factor 1A / IF-1 HQ397_05100 PF04377 Arginine-tRNA-protein transferase, C terminus HQ397_05100 PF04376 Arginine-tRNA-protein transferase, N terminus HQ397_05105 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HQ397_05110 PF05433 Glycine zipper 2TM domain HQ397_05120 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_05125 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ397_05125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ397_05130 PF01037 Lrp/AsnC ligand binding domain HQ397_05135 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HQ397_05135 PF17854 FtsK alpha domain HQ397_05135 PF09397 Ftsk gamma domain HQ397_05135 PF01580 FtsK/SpoIIIE family HQ397_05140 PF03548 Outer membrane lipoprotein carrier protein LolA HQ397_05145 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_05145 PF16193 AAA C-terminal domain HQ397_05145 PF12002 MgsA AAA+ ATPase C terminal HQ397_05150 PF02403 Seryl-tRNA synthetase N-terminal domain HQ397_05150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ397_05155 PF02674 Colicin V production protein HQ397_05160 PF00156 Phosphoribosyl transferase domain HQ397_05165 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HQ397_05170 PF00005 ABC transporter HQ397_05175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_05175 PF00005 ABC transporter HQ397_05185 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_05190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_05195 PF00158 Sigma-54 interaction domain HQ397_05195 PF02954 Bacterial regulatory protein, Fis family HQ397_05200 PF04012 PspA/IM30 family HQ397_05205 PF06667 Phage shock protein B HQ397_05215 PF04317 YcjX-like family, DUF463 HQ397_05220 PF05128 Domain of unknown function (DUF697) HQ397_05225 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HQ397_05230 PF01329 Pterin 4 alpha carbinolamine dehydratase HQ397_05240 PF18024 Helix-turn-helix domain HQ397_05240 PF00158 Sigma-54 interaction domain HQ397_05245 PF13689 YfiR/HmsC-like HQ397_05250 PF17152 Periplasmic sensor domain HQ397_05250 PF00990 Diguanylate cyclase, GGDEF domain HQ397_05255 PF00691 OmpA family HQ397_05260 PF03741 Integral membrane protein TerC family HQ397_05270 PF08891 YfcL protein HQ397_05275 PF00501 AMP-binding enzyme HQ397_05280 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HQ397_05280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ397_05285 PF04172 LrgB-like family HQ397_05290 PF03788 LrgA family HQ397_05305 PF08411 Exonuclease C-terminal HQ397_05305 PF00929 Exonuclease HQ397_05310 PF11762 L-arabinose isomerase C-terminal domain HQ397_05310 PF02610 L-arabinose isomerase HQ397_05315 PF00596 Class II Aldolase and Adducin N-terminal domain HQ397_05320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ397_05325 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_05330 PF00005 ABC transporter HQ397_05335 PF02653 Branched-chain amino acid transport system / permease component HQ397_05340 PF02311 AraC-like ligand binding domain HQ397_05340 PF12833 Helix-turn-helix domain HQ397_05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_05345 PF03466 LysR substrate binding domain HQ397_05350 PF02678 Pirin HQ397_05350 PF05726 Pirin C-terminal cupin domain HQ397_05355 PF00444 Ribosomal protein L36 HQ397_05360 PF01197 Ribosomal protein L31 HQ397_05375 PF01863 Protein of unknown function DUF45 HQ397_05400 PF01266 FAD dependent oxidoreductase HQ397_05400 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HQ397_05405 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_05405 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_05420 PF00285 Citrate synthase, C-terminal domain HQ397_05425 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ397_05430 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ397_05435 PF00890 FAD binding domain HQ397_05435 PF02910 Fumarate reductase flavoprotein C-term HQ397_05445 PF16870 2-oxoglutarate dehydrogenase C-terminal HQ397_05445 PF16078 2-oxoglutarate dehydrogenase N-terminus HQ397_05445 PF00676 Dehydrogenase E1 component HQ397_05445 PF02779 Transketolase, pyrimidine binding domain HQ397_05450 PF02817 e3 binding domain HQ397_05450 PF00364 Biotin-requiring enzyme HQ397_05450 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ397_05455 PF00549 CoA-ligase HQ397_05455 PF08442 ATP-grasp domain HQ397_05460 PF02629 CoA binding domain HQ397_05460 PF00549 CoA-ligase HQ397_05470 PF03692 Putative zinc- or iron-chelating domain HQ397_05475 PF01266 FAD dependent oxidoreductase HQ397_05480 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_05485 PF00005 ABC transporter HQ397_05495 PF07702 UTRA domain HQ397_05495 PF00392 Bacterial regulatory proteins, gntR family HQ397_05500 PF00266 Aminotransferase class-V HQ397_05505 PF00202 Aminotransferase class-III HQ397_05515 PF01228 Glycine radical HQ397_05515 PF02901 Pyruvate formate lyase-like HQ397_05520 PF01226 Formate/nitrite transporter HQ397_05525 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HQ397_05525 PF18381 YcaO cyclodehydratase C-terminal domain HQ397_05530 PF00893 Small Multidrug Resistance protein HQ397_05535 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ397_05535 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ397_05540 PF00675 Insulinase (Peptidase family M16) HQ397_05540 PF05193 Peptidase M16 inactive domain HQ397_05545 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ397_05555 PF13460 NAD(P)H-binding HQ397_05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_05560 PF03466 LysR substrate binding domain HQ397_05565 PF00106 short chain dehydrogenase HQ397_05570 PF12833 Helix-turn-helix domain HQ397_05575 PF07715 TonB-dependent Receptor Plug Domain HQ397_05575 PF00593 TonB dependent receptor HQ397_05585 PF03466 LysR substrate binding domain HQ397_05585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_05590 PF01717 Cobalamin-independent synthase, Catalytic domain HQ397_05590 PF08267 Cobalamin-independent synthase, N-terminal domain HQ397_05600 PF00571 CBS domain HQ397_05600 PF00478 IMP dehydrogenase / GMP reductase domain HQ397_05605 PF07969 Amidohydrolase family HQ397_05615 PF01266 FAD dependent oxidoreductase HQ397_05620 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HQ397_05630 PF01212 Beta-eliminating lyase HQ397_05635 PF00768 D-alanyl-D-alanine carboxypeptidase HQ397_05640 PF00293 NUDIX domain HQ397_05645 PF03918 Cytochrome C biogenesis protein HQ397_05650 PF08534 Redoxin HQ397_05655 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ397_05655 PF01578 Cytochrome C assembly protein HQ397_05660 PF03916 Polysulphide reductase, NrfD HQ397_05665 PF00037 4Fe-4S binding domain HQ397_05665 PF13247 4Fe-4S dicluster domain HQ397_05670 PF13435 Cytochrome c554 and c-prime HQ397_05670 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ397_05675 PF02335 Cytochrome c552 HQ397_05680 PF02754 Cysteine-rich domain HQ397_05680 PF13183 4Fe-4S dicluster domain HQ397_05685 PF00890 FAD binding domain HQ397_05690 PF01266 FAD dependent oxidoreductase HQ397_05690 PF04324 BFD-like [2Fe-2S] binding domain HQ397_05695 PF02810 SEC-C motif HQ397_05700 PF00672 HAMP domain HQ397_05700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_05700 PF17200 Single Cache domain 2 HQ397_05705 PF01047 MarR family HQ397_05705 PF00480 ROK family HQ397_05710 PF00989 PAS fold HQ397_05710 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HQ397_05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_05710 PF17203 Single cache domain 3 HQ397_05715 PF12431 Transcriptional regulator HQ397_05715 PF08279 HTH domain HQ397_05715 PF00072 Response regulator receiver domain HQ397_05720 PF01970 Tripartite tricarboxylate transporter TctA family HQ397_05735 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_05735 PF01464 Transglycosylase SLT domain HQ397_05740 PF02080 TrkA-C domain HQ397_05740 PF06826 Predicted Permease Membrane Region HQ397_05750 PF00271 Helicase conserved C-terminal domain HQ397_05750 PF04851 Type III restriction enzyme, res subunit HQ397_05750 PF02151 UvrB/uvrC motif HQ397_05750 PF12344 Ultra-violet resistance protein B HQ397_05750 PF17757 UvrB interaction domain HQ397_05760 PF09335 SNARE associated Golgi protein HQ397_05765 PF02600 Disulfide bond formation protein DsbB HQ397_05770 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HQ397_05775 PF07840 FadR C-terminal domain HQ397_05775 PF00392 Bacterial regulatory proteins, gntR family HQ397_05780 PF04293 SpoVR like protein HQ397_05785 PF04285 Protein of unknown function (DUF444) HQ397_05790 PF08298 PrkA AAA domain HQ397_05790 PF06798 PrkA serine protein kinase C-terminal domain HQ397_05795 PF09382 RQC domain HQ397_05795 PF16124 RecQ zinc-binding HQ397_05795 PF00570 HRDC domain HQ397_05795 PF00271 Helicase conserved C-terminal domain HQ397_05795 PF00270 DEAD/DEAH box helicase HQ397_05800 PF00375 Sodium:dicarboxylate symporter family HQ397_05805 PF03222 Tryptophan/tyrosine permease family HQ397_05810 PF00293 NUDIX domain HQ397_05815 PF04715 Anthranilate synthase component I, N terminal region HQ397_05815 PF00425 chorismate binding enzyme HQ397_05835 PF00343 Carbohydrate phosphorylase HQ397_05840 PF00939 Sodium:sulfate symporter transmembrane region HQ397_05845 PF00085 Thioredoxin HQ397_05855 PF00664 ABC transporter transmembrane region HQ397_05855 PF00005 ABC transporter HQ397_05860 PF00664 ABC transporter transmembrane region HQ397_05860 PF00005 ABC transporter HQ397_05880 PF01575 MaoC like domain HQ397_05905 PF08543 Phosphomethylpyrimidine kinase HQ397_05910 PF03992 Antibiotic biosynthesis monooxygenase HQ397_05915 PF00465 Iron-containing alcohol dehydrogenase HQ397_05920 PF00583 Acetyltransferase (GNAT) family HQ397_05930 PF01928 CYTH domain HQ397_05940 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HQ397_05950 PF13673 Acetyltransferase (GNAT) domain HQ397_05955 PF00271 Helicase conserved C-terminal domain HQ397_05955 PF00270 DEAD/DEAH box helicase HQ397_05960 PF00255 Glutathione peroxidase HQ397_06000 PF07478 D-ala D-ala ligase C-terminus HQ397_06000 PF01820 D-ala D-ala ligase N-terminus HQ397_06005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_06005 PF18029 Glyoxalase-like domain HQ397_06010 PF03942 DTW domain HQ397_06015 PF01925 Sulfite exporter TauE/SafE HQ397_06020 PF03466 LysR substrate binding domain HQ397_06020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_06030 PF14525 AraC-binding-like domain HQ397_06030 PF12833 Helix-turn-helix domain HQ397_06035 PF11398 Protein of unknown function (DUF2813) HQ397_06090 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ397_06090 PF00883 Cytosol aminopeptidase family, catalytic domain HQ397_06095 PF13419 Haloacid dehalogenase-like hydrolase HQ397_06100 PF07687 Peptidase dimerisation domain HQ397_06100 PF01546 Peptidase family M20/M25/M40 HQ397_06105 PF00365 Phosphofructokinase HQ397_06110 PF00121 Triosephosphate isomerase HQ397_06115 PF02698 DUF218 domain HQ397_06120 PF13847 Methyltransferase domain HQ397_06125 PF17192 MukF middle domain HQ397_06125 PF17193 MukF C-terminal domain HQ397_06125 PF03882 MukF winged-helix domain HQ397_06130 PF04288 MukE-like family HQ397_06135 PF04310 MukB N-terminal HQ397_06135 PF16330 MukB hinge domain HQ397_06140 PF03330 Lytic transglycolase HQ397_06155 PF01327 Polypeptide deformylase HQ397_06185 PF02567 Phenazine biosynthesis-like protein HQ397_06200 PF03831 PhnA domain HQ397_06200 PF08274 PhnA Zinc-Ribbon HQ397_06210 PF08329 Chitinase A, N-terminal domain HQ397_06210 PF00704 Glycosyl hydrolases family 18 HQ397_06230 PF13456 Reverse transcriptase-like HQ397_06230 PF00300 Histidine phosphatase superfamily (branch 1) HQ397_06235 PF08448 PAS fold HQ397_06235 PF00990 Diguanylate cyclase, GGDEF domain HQ397_06245 PF01713 Smr domain HQ397_06250 PF05175 Methyltransferase small domain HQ397_06255 PF01264 Chorismate synthase HQ397_06265 PF00270 DEAD/DEAH box helicase HQ397_06265 PF00271 Helicase conserved C-terminal domain HQ397_06285 PF03222 Tryptophan/tyrosine permease family HQ397_06290 PF00356 Bacterial regulatory proteins, lacI family HQ397_06290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_06295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_06295 PF00381 PTS HPr component phosphorylation site HQ397_06300 PF00294 pfkB family carbohydrate kinase HQ397_06305 PF02378 Phosphotransferase system, EIIC HQ397_06305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ397_06310 PF06560 Glucose-6-phosphate isomerase (GPI) HQ397_06315 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_06315 PF00356 Bacterial regulatory proteins, lacI family HQ397_06330 PF03830 PTS system sorbose subfamily IIB component HQ397_06330 PF03610 PTS system fructose IIA component HQ397_06335 PF03609 PTS system sorbose-specific iic component HQ397_06340 PF03613 PTS system mannose/fructose/sorbose family IID component HQ397_06350 PF06945 Protein of unknown function (DUF1289) HQ397_06355 PF06725 3D domain HQ397_06355 PF03562 MltA specific insert domain HQ397_06360 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_06365 PF00268 Ribonucleotide reductase, small chain HQ397_06370 PF02867 Ribonucleotide reductase, barrel domain HQ397_06370 PF00317 Ribonucleotide reductase, all-alpha domain HQ397_06370 PF03477 ATP cone domain HQ397_06375 PF13419 Haloacid dehalogenase-like hydrolase HQ397_06385 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ397_06385 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ397_06395 PF04055 Radical SAM superfamily HQ397_06405 PF03129 Anticodon binding domain HQ397_06405 PF02824 TGS domain HQ397_06405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ397_06405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ397_06410 PF00707 Translation initiation factor IF-3, C-terminal domain HQ397_06410 PF05198 Translation initiation factor IF-3, N-terminal domain HQ397_06415 PF01632 Ribosomal protein L35 HQ397_06420 PF00453 Ribosomal protein L20 HQ397_06425 PF01409 tRNA synthetases class II core domain (F) HQ397_06425 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HQ397_06430 PF03483 B3/4 domain HQ397_06430 PF03484 tRNA synthetase B5 domain HQ397_06430 PF03147 Ferredoxin-fold anticodon binding domain HQ397_06430 PF01588 Putative tRNA binding domain HQ397_06430 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HQ397_06435 PF00216 Bacterial DNA-binding protein HQ397_06440 PF00072 Response regulator receiver domain HQ397_06440 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ397_06440 PF00512 His Kinase A (phospho-acceptor) domain HQ397_06440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_06455 PF02146 Sir2 family HQ397_06465 PF17152 Periplasmic sensor domain HQ397_06465 PF00990 Diguanylate cyclase, GGDEF domain HQ397_06470 PF00356 Bacterial regulatory proteins, lacI family HQ397_06475 PF00294 pfkB family carbohydrate kinase HQ397_06480 PF13407 Periplasmic binding protein domain HQ397_06485 PF02653 Branched-chain amino acid transport system / permease component HQ397_06490 PF00005 ABC transporter HQ397_06495 PF05025 RbsD / FucU transport protein family HQ397_06500 PF13417 Glutathione S-transferase, N-terminal domain HQ397_06515 PF01171 PP-loop family HQ397_06520 PF00582 Universal stress protein family HQ397_06525 PF00027 Cyclic nucleotide-binding domain HQ397_06525 PF13545 Crp-like helix-turn-helix domain HQ397_06540 PF00403 Heavy-metal-associated domain HQ397_06550 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HQ397_06550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ397_06565 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ397_06575 PF13185 GAF domain HQ397_06580 PF04352 ProQ/FINO family HQ397_06580 PF17516 ProQ C-terminal domain HQ397_06585 PF11818 C-terminal domain of tail specific protease (DUF3340) HQ397_06585 PF00595 PDZ domain HQ397_06585 PF03572 Peptidase family S41 HQ397_06585 PF17804 Tail specific protease N-terminal domain HQ397_06590 PF11940 Domain of unknown function (DUF3458) Ig-like fold HQ397_06590 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HQ397_06590 PF01433 Peptidase family M1 domain HQ397_06600 PF05088 Bacterial NAD-glutamate dehydrogenase HQ397_06605 PF01180 Dihydroorotate dehydrogenase HQ397_06610 PF07126 Cell-division protein ZapC HQ397_06615 PF10672 S-adenosylmethionine-dependent methyltransferase HQ397_06615 PF02926 THUMP domain HQ397_06615 PF01170 Putative RNA methylase family UPF0020 HQ397_06625 PF16326 ABC transporter C-terminal domain HQ397_06625 PF00005 ABC transporter HQ397_06625 PF12848 ABC transporter HQ397_06635 PF04957 Ribosome modulation factor HQ397_06640 PF07977 FabA-like domain HQ397_06645 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ397_06645 PF13654 AAA domain HQ397_06680 PF10734 Protein of unknown function (DUF2523) HQ397_06685 PF05707 Zonular occludens toxin (Zot) HQ397_06710 PF07130 YebG protein HQ397_06745 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HQ397_06745 PF06974 Protein of unknown function (DUF1298) HQ397_06760 PF03972 MmgE/PrpD family HQ397_06765 PF00285 Citrate synthase, C-terminal domain HQ397_06780 PF04403 Paraquat-inducible protein A HQ397_06790 PF01189 16S rRNA methyltransferase RsmB/F HQ397_06790 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HQ397_06790 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HQ397_06800 PF00589 Phage integrase family HQ397_06805 PF01026 TatD related DNase HQ397_06810 PF09115 DNA polymerase III, delta subunit, C terminal HQ397_06815 PF02223 Thymidylate kinase HQ397_06820 PF02618 YceG-like family HQ397_06825 PF01063 Amino-transferase class IV HQ397_06830 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_06830 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_06835 PF00550 Phosphopantetheine attachment site HQ397_06845 PF00698 Acyl transferase domain HQ397_06850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ397_06850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ397_06855 PF02504 Fatty acid synthesis protein HQ397_06860 PF01783 Ribosomal L32p protein family HQ397_06865 PF02620 Large ribosomal RNA subunit accumulation protein YceD HQ397_06875 PF03466 LysR substrate binding domain HQ397_06875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_06880 PF07690 Major Facilitator Superfamily HQ397_06885 PF02545 Maf-like protein HQ397_06890 PF13419 Haloacid dehalogenase-like hydrolase HQ397_06895 PF01479 S4 domain HQ397_06895 PF00849 RNA pseudouridylate synthase HQ397_06900 PF12111 Polyribonucleotide phosphorylase C terminal HQ397_06900 PF10150 Ribonuclease E/G family HQ397_06900 PF00575 S1 RNA binding domain HQ397_06905 PF01384 Phosphate transporter family HQ397_06910 PF00692 dUTPase HQ397_06915 PF00485 Phosphoribulokinase / Uridine kinase family HQ397_06920 PF10609 NUBPL iron-transfer P-loop NTPase HQ397_06925 PF08264 Anticodon-binding domain of tRNA HQ397_06925 PF09334 tRNA synthetases class I (M) HQ397_06925 PF01588 Putative tRNA binding domain HQ397_06930 PF02798 Glutathione S-transferase, N-terminal domain HQ397_06930 PF00043 Glutathione S-transferase, C-terminal domain HQ397_06935 PF00708 Acylphosphatase HQ397_06940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_06940 PF00672 HAMP domain HQ397_06945 PF10672 S-adenosylmethionine-dependent methyltransferase HQ397_06945 PF17785 PUA-like domain HQ397_06960 PF00586 AIR synthase related protein, N-terminal domain HQ397_06960 PF02769 AIR synthase related protein, C-terminal domain HQ397_06970 PF00753 Metallo-beta-lactamase superfamily HQ397_06975 PF00072 Response regulator receiver domain HQ397_06980 PF00512 His Kinase A (phospho-acceptor) domain HQ397_06980 PF00672 HAMP domain HQ397_06980 PF00072 Response regulator receiver domain HQ397_06980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ397_06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_06980 PF01627 Hpt domain HQ397_06985 PF01386 Ribosomal L25p family HQ397_06995 PF00270 DEAD/DEAH box helicase HQ397_06995 PF11898 Domain of unknown function (DUF3418) HQ397_06995 PF04408 Helicase associated domain (HA2) HQ397_06995 PF00271 Helicase conserved C-terminal domain HQ397_06995 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HQ397_07000 PF01743 Poly A polymerase head domain HQ397_07000 PF01368 DHH family HQ397_07000 PF00571 CBS domain HQ397_07000 PF02272 DHHA1 domain HQ397_07005 PF00196 Bacterial regulatory proteins, luxR family HQ397_07005 PF00072 Response regulator receiver domain HQ397_07015 PF02575 YbaB/EbfC DNA-binding family HQ397_07020 PF12169 DNA polymerase III subunits gamma and tau domain III HQ397_07020 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HQ397_07020 PF12170 DNA polymerase III tau subunit V interacting with alpha HQ397_07025 PF00156 Phosphoribosyl transferase domain HQ397_07030 PF04304 Protein of unknown function (DUF454) HQ397_07035 PF01207 Dihydrouridine synthase (Dus) HQ397_07050 PF01612 3'-5' exonuclease HQ397_07050 PF00570 HRDC domain HQ397_07055 PF00501 AMP-binding enzyme HQ397_07055 PF13193 AMP-binding enzyme C-terminal domain HQ397_07060 PF12697 Alpha/beta hydrolase family HQ397_07060 PF08241 Methyltransferase domain HQ397_07070 PF00814 Glycoprotease family HQ397_07085 PF01634 ATP phosphoribosyltransferase HQ397_07085 PF08029 HisG, C-terminal domain HQ397_07090 PF00815 Histidinol dehydrogenase HQ397_07095 PF00155 Aminotransferase class I and II HQ397_07100 PF00475 Imidazoleglycerol-phosphate dehydratase HQ397_07100 PF08645 Polynucleotide kinase 3 phosphatase HQ397_07105 PF00117 Glutamine amidotransferase class-I HQ397_07110 PF00977 Histidine biosynthesis protein HQ397_07115 PF00072 Response regulator receiver domain HQ397_07120 PF00990 Diguanylate cyclase, GGDEF domain HQ397_07120 PF08448 PAS fold HQ397_07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_07125 PF00512 His Kinase A (phospho-acceptor) domain HQ397_07125 PF01627 Hpt domain HQ397_07125 PF00072 Response regulator receiver domain HQ397_07130 PF00977 Histidine biosynthesis protein HQ397_07135 PF01502 Phosphoribosyl-AMP cyclohydrolase HQ397_07135 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HQ397_07145 PF00501 AMP-binding enzyme HQ397_07145 PF13193 AMP-binding enzyme C-terminal domain HQ397_07150 PF03606 C4-dicarboxylate anaerobic carrier HQ397_07170 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_07170 PF01799 [2Fe-2S] binding domain HQ397_07175 PF03450 CO dehydrogenase flavoprotein C-terminal domain HQ397_07175 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ397_07180 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ397_07180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ397_07185 PF00860 Permease family HQ397_07190 PF01979 Amidohydrolase family HQ397_07195 PF00860 Permease family HQ397_07200 PF01799 [2Fe-2S] binding domain HQ397_07200 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ397_07200 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ397_07205 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ397_07210 PF01979 Amidohydrolase family HQ397_07215 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ397_07215 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_07230 PF13478 XdhC Rossmann domain HQ397_07230 PF02625 XdhC and CoxI family HQ397_07235 PF00892 EamA-like transporter family HQ397_07245 PF01979 Amidohydrolase family HQ397_07250 PF07687 Peptidase dimerisation domain HQ397_07250 PF01546 Peptidase family M20/M25/M40 HQ397_07255 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_07265 PF13188 PAS domain HQ397_07265 PF00158 Sigma-54 interaction domain HQ397_07265 PF02954 Bacterial regulatory protein, Fis family HQ397_07300 PF07152 YaeQ protein HQ397_07310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ397_07310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ397_07310 PF00378 Enoyl-CoA hydratase/isomerase HQ397_07315 PF02803 Thiolase, C-terminal domain HQ397_07315 PF00108 Thiolase, N-terminal domain HQ397_07320 PF17863 AAA lid domain HQ397_07320 PF07726 ATPase family associated with various cellular activities (AAA) HQ397_07360 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ397_07365 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ397_07370 PF00563 EAL domain HQ397_07370 PF08668 HDOD domain HQ397_07375 PF02803 Thiolase, C-terminal domain HQ397_07375 PF00108 Thiolase, N-terminal domain HQ397_07380 PF09278 MerR, DNA binding HQ397_07380 PF00376 MerR family regulatory protein HQ397_07390 PF06865 Pyrimidine/purine nucleoside phosphorylase HQ397_07395 PF03313 Serine dehydratase alpha chain HQ397_07395 PF03315 Serine dehydratase beta chain HQ397_07400 PF03315 Serine dehydratase beta chain HQ397_07400 PF03313 Serine dehydratase alpha chain HQ397_07405 PF13406 Transglycosylase SLT domain HQ397_07410 PF05166 YcgL domain HQ397_07415 PF05209 Septum formation inhibitor MinC, N-terminal domain HQ397_07415 PF03775 Septum formation inhibitor MinC, C-terminal domain HQ397_07420 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HQ397_07425 PF03776 Septum formation topological specificity factor MinE HQ397_07430 PF04269 Protein of unknown function, DUF440 HQ397_07435 PF00912 Transglycosylase HQ397_07440 PF04269 Protein of unknown function, DUF440 HQ397_07450 PF17783 CvfB-like winged helix domain HQ397_07450 PF13509 S1 domain HQ397_07475 PF02525 Flavodoxin-like fold HQ397_07480 PF00892 EamA-like transporter family HQ397_07485 PF01370 NAD dependent epimerase/dehydratase family HQ397_07485 PF02222 ATP-grasp domain HQ397_07490 PF13419 Haloacid dehalogenase-like hydrolase HQ397_07500 PF00677 Lumazine binding domain HQ397_07505 PF06786 Uncharacterised protein family (UPF0253) HQ397_07510 PF01554 MatE HQ397_07540 PF00136 DNA polymerase family B HQ397_07540 PF03104 DNA polymerase family B, exonuclease domain HQ397_07550 PF17151 Periplasmic sensor domain HQ397_07550 PF00990 Diguanylate cyclase, GGDEF domain HQ397_07565 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ397_07570 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ397_07580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_07580 PF03466 LysR substrate binding domain HQ397_07585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ397_07585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ397_07590 PF01261 Xylose isomerase-like TIM barrel HQ397_07595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_07595 PF03466 LysR substrate binding domain HQ397_07605 PF01966 HD domain HQ397_07615 PF03707 Bacterial signalling protein N terminal repeat HQ397_07615 PF00990 Diguanylate cyclase, GGDEF domain HQ397_07615 PF13188 PAS domain HQ397_07615 PF00563 EAL domain HQ397_07620 PF00232 Glycosyl hydrolase family 1 HQ397_07625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_07625 PF03466 LysR substrate binding domain HQ397_07630 PF07694 5TMR of 5TMR-LYT HQ397_07630 PF00990 Diguanylate cyclase, GGDEF domain HQ397_07635 PF00248 Aldo/keto reductase family HQ397_07645 PF00248 Aldo/keto reductase family HQ397_07650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_07650 PF03466 LysR substrate binding domain HQ397_07660 PF01925 Sulfite exporter TauE/SafE HQ397_07665 PF13520 Amino acid permease HQ397_07675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ397_07675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ397_07680 PF00378 Enoyl-CoA hydratase/isomerase HQ397_07690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_07690 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_07690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_07695 PF00171 Aldehyde dehydrogenase family HQ397_07700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_07700 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_07700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_07710 PF00378 Enoyl-CoA hydratase/isomerase HQ397_07715 PF00364 Biotin-requiring enzyme HQ397_07715 PF02785 Biotin carboxylase C-terminal domain HQ397_07715 PF00289 Biotin carboxylase, N-terminal domain HQ397_07715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ397_07720 PF00682 HMGL-like HQ397_07725 PF00376 MerR family regulatory protein HQ397_07725 PF09278 MerR, DNA binding HQ397_07740 PF01184 GPR1/FUN34/yaaH family HQ397_07745 PF06167 Glucose-regulated metallo-peptidase M90 HQ397_07755 PF01235 Sodium:alanine symporter family HQ397_07760 PF00378 Enoyl-CoA hydratase/isomerase HQ397_07775 PF04341 Protein of unknown function, DUF485 HQ397_07780 PF00474 Sodium:solute symporter family HQ397_07785 PF00005 ABC transporter HQ397_07785 PF12848 ABC transporter HQ397_07790 PF13145 PPIC-type PPIASE domain HQ397_07795 PF00216 Bacterial DNA-binding protein HQ397_07800 PF02190 ATP-dependent protease La (LON) substrate-binding domain HQ397_07800 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ397_07800 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_07805 PF07724 AAA domain (Cdc48 subfamily) HQ397_07805 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_07805 PF06689 ClpX C4-type zinc finger HQ397_07810 PF00574 Clp protease HQ397_07815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_07815 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ397_07815 PF05697 Bacterial trigger factor protein (TF) HQ397_07830 PF02687 FtsX-like permease family HQ397_07830 PF12704 MacB-like periplasmic core domain HQ397_07835 PF00005 ABC transporter HQ397_07840 PF02687 FtsX-like permease family HQ397_07840 PF12704 MacB-like periplasmic core domain HQ397_07850 PF02559 CarD-like/TRCF domain HQ397_07850 PF00270 DEAD/DEAH box helicase HQ397_07850 PF00271 Helicase conserved C-terminal domain HQ397_07850 PF03461 TRCF domain HQ397_07850 PF17757 UvrB interaction domain HQ397_07855 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HQ397_07860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_07865 PF00892 EamA-like transporter family HQ397_07875 PF00300 Histidine phosphatase superfamily (branch 1) HQ397_07880 PF05193 Peptidase M16 inactive domain HQ397_07880 PF00675 Insulinase (Peptidase family M16) HQ397_07885 PF05724 Thiopurine S-methyltransferase (TPMT) HQ397_07900 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ397_07900 PF12833 Helix-turn-helix domain HQ397_07900 PF02805 Metal binding domain of Ada HQ397_07900 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ397_07925 PF00117 Glutamine amidotransferase class-I HQ397_07925 PF00958 GMP synthase C terminal domain HQ397_07925 PF02540 NAD synthase HQ397_07930 PF00478 IMP dehydrogenase / GMP reductase domain HQ397_07930 PF00571 CBS domain HQ397_07935 PF02705 K+ potassium transporter HQ397_07945 PF01618 MotA/TolQ/ExbB proton channel family HQ397_07950 PF02472 Biopolymer transport protein ExbD/TolR HQ397_07955 PF00892 EamA-like transporter family HQ397_07960 PF02601 Exonuclease VII, large subunit HQ397_07960 PF13742 OB-fold nucleic acid binding domain HQ397_07965 PF04055 Radical SAM superfamily HQ397_07970 PF00672 HAMP domain HQ397_07970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_07975 PF00793 DAHP synthetase I family HQ397_07980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ397_07985 PF00266 Aminotransferase class-V HQ397_07990 PF01012 Electron transfer flavoprotein domain HQ397_07990 PF00766 Electron transfer flavoprotein FAD-binding domain HQ397_07995 PF01012 Electron transfer flavoprotein domain HQ397_08005 PF01544 CorA-like Mg2+ transporter protein HQ397_08010 PF11143 Protein of unknown function (DUF2919) HQ397_08025 PF07715 TonB-dependent Receptor Plug Domain HQ397_08025 PF00593 TonB dependent receptor HQ397_08030 PF01032 FecCD transport family HQ397_08035 PF01032 FecCD transport family HQ397_08040 PF00005 ABC transporter HQ397_08045 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HQ397_08045 PF01648 4'-phosphopantetheinyl transferase superfamily HQ397_08050 PF01497 Periplasmic binding protein HQ397_08055 PF00975 Thioesterase domain HQ397_08055 PF00668 Condensation domain HQ397_08055 PF00501 AMP-binding enzyme HQ397_08055 PF13193 AMP-binding enzyme C-terminal domain HQ397_08055 PF00550 Phosphopantetheine attachment site HQ397_08075 PF00857 Isochorismatase family HQ397_08075 PF00550 Phosphopantetheine attachment site HQ397_08080 PF13193 AMP-binding enzyme C-terminal domain HQ397_08080 PF00501 AMP-binding enzyme HQ397_08085 PF00425 chorismate binding enzyme HQ397_08090 PF07273 Protein of unknown function (DUF1439) HQ397_08100 PF00483 Nucleotidyl transferase HQ397_08105 PF03707 Bacterial signalling protein N terminal repeat HQ397_08105 PF00990 Diguanylate cyclase, GGDEF domain HQ397_08105 PF00563 EAL domain HQ397_08120 PF00294 pfkB family carbohydrate kinase HQ397_08130 PF00762 Ferrochelatase HQ397_08135 PF05191 Adenylate kinase, active site lid HQ397_08140 PF00183 Hsp90 protein HQ397_08140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_08145 PF13662 Toprim domain HQ397_08145 PF02132 RecR protein HQ397_08150 PF02634 FdhD/NarQ family HQ397_08155 PF00158 Sigma-54 interaction domain HQ397_08155 PF01590 GAF domain HQ397_08155 PF02954 Bacterial regulatory protein, Fis family HQ397_08170 PF13247 4Fe-4S dicluster domain HQ397_08170 PF12800 4Fe-4S binding domain HQ397_08185 PF02705 K+ potassium transporter HQ397_08190 PF00037 4Fe-4S binding domain HQ397_08190 PF12798 4Fe-4S binding domain HQ397_08195 PF00361 Proton-conducting membrane transporter HQ397_08200 PF00146 NADH dehydrogenase HQ397_08205 PF00374 Nickel-dependent hydrogenase HQ397_08205 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ397_08205 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ397_08210 PF12838 4Fe-4S dicluster domain HQ397_08215 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ397_08220 PF07450 Formate hydrogenlyase maturation protein HycH HQ397_08240 PF09107 Elongation factor SelB, winged helix HQ397_08240 PF03144 Elongation factor Tu domain 2 HQ397_08240 PF09105 Elongation factor SelB, winged helix HQ397_08240 PF09106 Elongation factor SelB, winged helix HQ397_08240 PF00009 Elongation factor Tu GTP binding domain HQ397_08245 PF00708 Acylphosphatase HQ397_08245 PF17788 HypF Kae1-like domain HQ397_08245 PF01300 Telomere recombination HQ397_08245 PF07503 HypF finger HQ397_08250 PF01455 HupF/HypC family HQ397_08255 PF01924 Hydrogenase formation hypA family HQ397_08260 PF02769 AIR synthase related protein, C-terminal domain HQ397_08260 PF00586 AIR synthase related protein, N-terminal domain HQ397_08265 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HQ397_08270 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ397_08275 PF00005 ABC transporter HQ397_08275 PF08402 TOBE domain HQ397_08280 PF00005 ABC transporter HQ397_08280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_08285 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_08285 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_08290 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_08295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_08300 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HQ397_08305 PF01750 Hydrogenase maturation protease HQ397_08310 PF00374 Nickel-dependent hydrogenase HQ397_08315 PF03916 Polysulphide reductase, NrfD HQ397_08320 PF13247 4Fe-4S dicluster domain HQ397_08325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ397_08325 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HQ397_08330 PF02954 Bacterial regulatory protein, Fis family HQ397_08330 PF00072 Response regulator receiver domain HQ397_08330 PF00158 Sigma-54 interaction domain HQ397_08345 PF00672 HAMP domain HQ397_08345 PF17202 Single cache domain 3 HQ397_08345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_08350 PF01584 CheW-like domain HQ397_08355 PF01739 CheR methyltransferase, SAM binding domain HQ397_08355 PF03705 CheR methyltransferase, all-alpha domain HQ397_08360 PF01339 CheB methylesterase HQ397_08360 PF00072 Response regulator receiver domain HQ397_08365 PF03707 Bacterial signalling protein N terminal repeat HQ397_08365 PF00990 Diguanylate cyclase, GGDEF domain HQ397_08365 PF00563 EAL domain HQ397_08370 PF00672 HAMP domain HQ397_08370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_08370 PF12729 Four helix bundle sensory module for signal transduction HQ397_08375 PF01168 Alanine racemase, N-terminal domain HQ397_08375 PF00842 Alanine racemase, C-terminal domain HQ397_08395 PF00916 Sulfate permease family HQ397_08395 PF01740 STAS domain HQ397_08410 PF03350 Uncharacterized protein family, UPF0114 HQ397_08425 PF03239 Iron permease FTR1 family HQ397_08430 PF01593 Flavin containing amine oxidoreductase HQ397_08445 PF07690 Major Facilitator Superfamily HQ397_08455 PF00005 ABC transporter HQ397_08460 PF02687 FtsX-like permease family HQ397_08460 PF12704 MacB-like periplasmic core domain HQ397_08480 PF02913 FAD linked oxidases, C-terminal domain HQ397_08480 PF01565 FAD binding domain HQ397_08485 PF02589 LUD domain HQ397_08490 PF13183 4Fe-4S dicluster domain HQ397_08490 PF02589 LUD domain HQ397_08490 PF11870 Domain of unknown function (DUF3390) HQ397_08495 PF02754 Cysteine-rich domain HQ397_08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_08505 PF03466 LysR substrate binding domain HQ397_08515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_08520 PF00561 alpha/beta hydrolase fold HQ397_08540 PF01625 Peptide methionine sulfoxide reductase HQ397_08545 PF00696 Amino acid kinase family HQ397_08545 PF00583 Acetyltransferase (GNAT) family HQ397_08550 PF00696 Amino acid kinase family HQ397_08550 PF01842 ACT domain HQ397_08560 PF00884 Sulfatase HQ397_08565 PF17676 LD-carboxypeptidase C-terminal domain HQ397_08565 PF02016 LD-carboxypeptidase N-terminal domain HQ397_08570 PF01734 Patatin-like phospholipase HQ397_08580 PF01906 Putative heavy-metal-binding HQ397_08600 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_08605 PF05728 Uncharacterised protein family (UPF0227) HQ397_08615 PF01432 Peptidase family M3 HQ397_08615 PF08439 Oligopeptidase F HQ397_08635 PF02355 Protein export membrane protein HQ397_08635 PF07549 SecD/SecF GG Motif HQ397_08640 PF07549 SecD/SecF GG Motif HQ397_08640 PF13721 SecD export protein N-terminal TM region HQ397_08640 PF02355 Protein export membrane protein HQ397_08675 PF01230 HIT domain HQ397_08680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_08680 PF00672 HAMP domain HQ397_08690 PF01979 Amidohydrolase family HQ397_08705 PF00375 Sodium:dicarboxylate symporter family HQ397_08710 PF04191 Phospholipid methyltransferase HQ397_08715 PF01168 Alanine racemase, N-terminal domain HQ397_08715 PF00842 Alanine racemase, C-terminal domain HQ397_08720 PF03741 Integral membrane protein TerC family HQ397_08725 PF00005 ABC transporter HQ397_08725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_08735 PF00005 ABC transporter HQ397_08735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_08740 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_08740 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_08745 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_08750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_08755 PF01914 MarC family integral membrane protein HQ397_08765 PF00171 Aldehyde dehydrogenase family HQ397_08765 PF00465 Iron-containing alcohol dehydrogenase HQ397_08770 PF01966 HD domain HQ397_08775 PF07694 5TMR of 5TMR-LYT HQ397_08775 PF06580 Histidine kinase HQ397_08780 PF00072 Response regulator receiver domain HQ397_08780 PF04397 LytTr DNA-binding domain HQ397_08785 PF02554 Carbon starvation protein CstA HQ397_08790 PF11742 Protein of unknown function (DUF3302) HQ397_08795 PF00529 HlyD membrane-fusion protein of T1SS HQ397_08795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_08800 PF00271 Helicase conserved C-terminal domain HQ397_08800 PF04851 Type III restriction enzyme, res subunit HQ397_08805 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HQ397_08810 PF00462 Glutaredoxin HQ397_08820 PF00155 Aminotransferase class I and II HQ397_08825 PF03606 C4-dicarboxylate anaerobic carrier HQ397_08830 PF07055 Enoyl reductase FAD binding domain HQ397_08830 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ397_08830 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ397_08835 PF13426 PAS domain HQ397_08835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_08835 PF08447 PAS fold HQ397_08845 PF00892 EamA-like transporter family HQ397_08850 PF02508 Rnf-Nqr subunit, membrane protein HQ397_08855 PF04060 Putative Fe-S cluster HQ397_08860 PF13375 RnfC Barrel sandwich hybrid domain HQ397_08860 PF10531 SLBB domain HQ397_08860 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ397_08860 PF12838 4Fe-4S dicluster domain HQ397_08865 PF03116 NQR2, RnfD, RnfE family HQ397_08870 PF04205 FMN-binding domain HQ397_08875 PF02508 Rnf-Nqr subunit, membrane protein HQ397_08880 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ397_08880 PF00633 Helix-hairpin-helix motif HQ397_08880 PF10576 Iron-sulfur binding domain of endonuclease III HQ397_08885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_08890 PF18393 MotY N-terminal domain HQ397_08890 PF00691 OmpA family HQ397_08895 PF12729 Four helix bundle sensory module for signal transduction HQ397_08895 PF00672 HAMP domain HQ397_08895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_08900 PF00929 Exonuclease HQ397_08905 PF13726 Na+-H+ antiporter family HQ397_08905 PF03553 Na+/H+ antiporter family HQ397_08910 PF03880 DbpA RNA binding domain HQ397_08910 PF00270 DEAD/DEAH box helicase HQ397_08910 PF00271 Helicase conserved C-terminal domain HQ397_08915 PF03061 Thioesterase superfamily HQ397_08935 PF03741 Integral membrane protein TerC family HQ397_08935 PF03471 Transporter associated domain HQ397_08940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ397_08945 PF00962 Adenosine/AMP deaminase HQ397_08950 PF13344 Haloacid dehalogenase-like hydrolase HQ397_08955 PF02254 TrkA-N domain HQ397_08955 PF00999 Sodium/hydrogen exchanger family HQ397_08965 PF13537 Glutamine amidotransferase domain HQ397_08965 PF00733 Asparagine synthase HQ397_08980 PF14497 Glutathione S-transferase, C-terminal domain HQ397_08980 PF02798 Glutathione S-transferase, N-terminal domain HQ397_08990 PF04209 homogentisate 1,2-dioxygenase HQ397_09010 PF13426 PAS domain HQ397_09010 PF00990 Diguanylate cyclase, GGDEF domain HQ397_09010 PF00563 EAL domain HQ397_09015 PF08447 PAS fold HQ397_09015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_09025 PF09924 Uncharacterised conserved protein (DUF2156) HQ397_09025 PF03706 Lysylphosphatidylglycerol synthase TM region HQ397_09040 PF08019 Phosphoethanolamine transferase EptA/EptB HQ397_09040 PF00884 Sulfatase HQ397_09055 PF02108 Flagellar assembly protein FliH HQ397_09065 PF01514 Secretory protein of YscJ/FliF family HQ397_09070 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI HQ397_09075 PF09025 YopR, type III needle-polymerisation regulator HQ397_09080 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) HQ397_09085 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HQ397_09095 PF16693 Inner membrane component of T3SS, periplasmic domain HQ397_09095 PF16697 Inner membrane component of T3SS, cytoplasmic domain HQ397_09100 PF00263 Bacterial type II and III secretion system protein HQ397_09100 PF03958 Bacterial type II/III secretion system short domain HQ397_09110 PF16806 Antiactivator protein ExsD HQ397_09115 PF12833 Helix-turn-helix domain HQ397_09130 PF05932 Tir chaperone protein (CesT) family HQ397_09135 PF05844 YopD protein HQ397_09145 PF04888 Secretion system effector C (SseC) like family HQ397_09150 PF07720 Tetratricopeptide repeat HQ397_09155 PF04792 V antigen (LcrV) protein HQ397_09165 PF09621 Type III secretion system regulator (LcrR) HQ397_09170 PF00771 FHIPEP family HQ397_09180 PF09474 Type III secretion system YscX (type_III_YscX) HQ397_09190 PF09059 TyeA HQ397_09195 PF07201 HrpJ-like domain HQ397_09200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_09200 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ397_09200 PF18269 T3SS EscN ATPase C-terminal domain HQ397_09210 PF02120 Flagellar hook-length control protein FliK HQ397_09215 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ397_09220 PF00813 FliP family HQ397_09225 PF01313 Bacterial export proteins, family 3 HQ397_09230 PF01311 Bacterial export proteins, family 1 HQ397_09235 PF01312 FlhB HrpN YscU SpaS Family HQ397_09255 PF01027 Inhibitor of apoptosis-promoting Bax1 HQ397_09260 PF12805 FUSC-like inner membrane protein yccS HQ397_09265 PF04358 DsrC like protein HQ397_09270 PF05036 Sporulation related domain HQ397_09275 PF08245 Mur ligase middle domain HQ397_09275 PF02875 Mur ligase family, glutamate ligase domain HQ397_09280 PF01039 Carboxyl transferase domain HQ397_09280 PF17848 Acetyl-coA carboxylase zinc finger domain HQ397_09295 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ397_09295 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ397_09300 PF11890 Domain of unknown function (DUF3410) HQ397_09300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_09300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ397_09305 PF01569 PAP2 superfamily HQ397_09310 PF03180 NLPA lipoprotein HQ397_09330 PF01483 Proprotein convertase P-domain HQ397_09330 PF00082 Subtilase family HQ397_09340 PF14310 Fibronectin type III-like domain HQ397_09340 PF00933 Glycosyl hydrolase family 3 N terminal domain HQ397_09340 PF01915 Glycosyl hydrolase family 3 C-terminal domain HQ397_09350 PF00391 PEP-utilising enzyme, mobile domain HQ397_09350 PF02896 PEP-utilising enzyme, TIM barrel domain HQ397_09350 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ397_09355 PF03618 Kinase/pyrophosphorylase HQ397_09365 PF00324 Amino acid permease HQ397_09410 PF00664 ABC transporter transmembrane region HQ397_09410 PF00005 ABC transporter HQ397_09410 PF03412 Peptidase C39 family HQ397_09415 PF04055 Radical SAM superfamily HQ397_09415 PF16199 Radical_SAM C-terminal domain HQ397_09425 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ397_09425 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_09430 PF00005 ABC transporter HQ397_09435 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_09440 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_09455 PF09278 MerR, DNA binding HQ397_09455 PF00376 MerR family regulatory protein HQ397_09480 PF00270 DEAD/DEAH box helicase HQ397_09480 PF00271 Helicase conserved C-terminal domain HQ397_09485 PF13302 Acetyltransferase (GNAT) domain HQ397_09510 PF07759 Protein of unknown function (DUF1615) HQ397_09515 PF08502 LeuA allosteric (dimerisation) domain HQ397_09515 PF00682 HMGL-like HQ397_09525 PF00117 Glutamine amidotransferase class-I HQ397_09525 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HQ397_09530 PF01113 Dihydrodipicolinate reductase, N-terminus HQ397_09530 PF05173 Dihydrodipicolinate reductase, C-terminus HQ397_09540 PF01812 5-formyltetrahydrofolate cyclo-ligase family HQ397_09545 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HQ397_09550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_09550 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ397_09550 PF01842 ACT domain HQ397_09555 PF01219 Prokaryotic diacylglycerol kinase HQ397_09560 PF00793 DAHP synthetase I family HQ397_09565 PF00583 Acetyltransferase (GNAT) family HQ397_09570 PF00005 ABC transporter HQ397_09575 PF01032 FecCD transport family HQ397_09580 PF00072 Response regulator receiver domain HQ397_09580 PF00989 PAS fold HQ397_09580 PF01627 Hpt domain HQ397_09580 PF00512 His Kinase A (phospho-acceptor) domain HQ397_09580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_09580 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_09590 PF00437 Type II/IV secretion system protein HQ397_09595 PF00483 Nucleotidyl transferase HQ397_09610 PF07670 Nucleoside recognition HQ397_09610 PF02421 Ferrous iron transport protein B HQ397_09610 PF07664 Ferrous iron transport protein B C terminus HQ397_09620 PF01253 Translation initiation factor SUI1 HQ397_09625 PF01169 Uncharacterized protein family UPF0016 HQ397_09655 PF00990 Diguanylate cyclase, GGDEF domain HQ397_09655 PF13185 GAF domain HQ397_09680 PF01406 tRNA synthetases class I (C) catalytic domain HQ397_09680 PF09190 DALR domain HQ397_09685 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ397_09695 PF00149 Calcineurin-like phosphoesterase HQ397_09700 PF03916 Polysulphide reductase, NrfD HQ397_09705 PF00037 4Fe-4S binding domain HQ397_09705 PF13247 4Fe-4S dicluster domain HQ397_09725 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ397_09730 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HQ397_09735 PF00672 HAMP domain HQ397_09735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_09740 PF13426 PAS domain HQ397_09740 PF08447 PAS fold HQ397_09740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_09750 PF03793 PASTA domain HQ397_09750 PF00069 Protein kinase domain HQ397_09860 PF01066 CDP-alcohol phosphatidyltransferase HQ397_09865 PF08459 UvrC Helix-hairpin-helix N-terminal HQ397_09865 PF02151 UvrB/uvrC motif HQ397_09865 PF01541 GIY-YIG catalytic domain HQ397_09870 PF00196 Bacterial regulatory proteins, luxR family HQ397_09870 PF00072 Response regulator receiver domain HQ397_09875 PF02348 Cytidylyltransferase HQ397_09880 PF03966 Trm112p-like protein HQ397_09885 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HQ397_09890 PF00664 ABC transporter transmembrane region HQ397_09890 PF00005 ABC transporter HQ397_09895 PF03772 Competence protein HQ397_09895 PF00753 Metallo-beta-lactamase superfamily HQ397_09915 PF06291 Bor protein HQ397_09920 PF06291 Bor protein HQ397_09930 PF06406 StbA protein HQ397_09935 PF00561 alpha/beta hydrolase fold HQ397_09940 PF00005 ABC transporter HQ397_09940 PF03459 TOBE domain HQ397_09945 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_09955 PF02391 MoaE protein HQ397_09960 PF02597 ThiS family HQ397_09965 PF01967 MoaC family HQ397_09970 PF00994 Probable molybdopterin binding domain HQ397_09975 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ397_09980 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HQ397_09985 PF13237 4Fe-4S dicluster domain HQ397_09985 PF12801 4Fe-4S binding domain HQ397_09990 PF12800 4Fe-4S binding domain HQ397_09990 PF12838 4Fe-4S dicluster domain HQ397_09995 PF00384 Molybdopterin oxidoreductase HQ397_09995 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_09995 PF01568 Molydopterin dinucleotide binding domain HQ397_09995 PF10518 TAT (twin-arginine translocation) pathway signal sequence HQ397_10005 PF13187 4Fe-4S dicluster domain HQ397_10005 PF00037 4Fe-4S binding domain HQ397_10005 PF12800 4Fe-4S binding domain HQ397_10010 PF06463 Molybdenum Cofactor Synthesis C HQ397_10010 PF04055 Radical SAM superfamily HQ397_10015 PF07730 Histidine kinase HQ397_10015 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HQ397_10015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_10015 PF00672 HAMP domain HQ397_10020 PF00072 Response regulator receiver domain HQ397_10020 PF00196 Bacterial regulatory proteins, luxR family HQ397_10030 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ397_10030 PF00672 HAMP domain HQ397_10030 PF00072 Response regulator receiver domain HQ397_10030 PF01627 Hpt domain HQ397_10030 PF00512 His Kinase A (phospho-acceptor) domain HQ397_10030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_10055 PF13580 SIS domain HQ397_10060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_10060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_10060 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_10060 PF09317 Domain of unknown function (DUF1974) HQ397_10065 PF11849 Domain of unknown function (DUF3369) HQ397_10070 PF01769 Divalent cation transporter HQ397_10070 PF00571 CBS domain HQ397_10070 PF03448 MgtE intracellular N domain HQ397_10090 PF02119 Flagellar P-ring protein HQ397_10095 PF02107 Flagellar L-ring protein HQ397_10105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_10105 PF00460 Flagella basal body rod protein HQ397_10110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_10110 PF00460 Flagella basal body rod protein HQ397_10110 PF07559 Flagellar basal body protein FlaE HQ397_10120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_10120 PF00460 Flagella basal body rod protein HQ397_10125 PF00460 Flagella basal body rod protein HQ397_10130 PF03705 CheR methyltransferase, all-alpha domain HQ397_10130 PF01739 CheR methyltransferase, SAM binding domain HQ397_10135 PF01584 CheW-like domain HQ397_10135 PF00072 Response regulator receiver domain HQ397_10140 PF13144 Chaperone for flagella basal body P-ring formation HQ397_10155 PF12850 Calcineurin-like phosphoesterase superfamily domain HQ397_10160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_10170 PF00849 RNA pseudouridylate synthase HQ397_10170 PF01479 S4 domain HQ397_10175 PF11871 Domain of unknown function (DUF3391) HQ397_10175 PF01966 HD domain HQ397_10185 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ397_10190 PF04055 Radical SAM superfamily HQ397_10200 PF08220 DeoR-like helix-turn-helix domain HQ397_10200 PF00455 DeoR C terminal sensor domain HQ397_10205 PF00892 EamA-like transporter family HQ397_10210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_10235 PF00313 'Cold-shock' DNA-binding domain HQ397_10240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ397_10240 PF00364 Biotin-requiring enzyme HQ397_10240 PF02817 e3 binding domain HQ397_10250 PF00676 Dehydrogenase E1 component HQ397_10255 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HQ397_10265 PF05472 DNA replication terminus site-binding protein (Ter protein) HQ397_10270 PF04434 SWIM zinc finger HQ397_10270 PF00176 SNF2 family N-terminal domain HQ397_10270 PF00271 Helicase conserved C-terminal domain HQ397_10275 PF04337 Protein of unknown function, DUF480 HQ397_10285 PF02706 Chain length determinant protein HQ397_10290 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HQ397_10295 PF00483 Nucleotidyl transferase HQ397_10300 PF04321 RmlD substrate binding domain HQ397_10305 PF16363 GDP-mannose 4,6 dehydratase HQ397_10310 PF02719 Polysaccharide biosynthesis protein HQ397_10315 PF02397 Bacterial sugar transferase HQ397_10320 PF01370 NAD dependent epimerase/dehydratase family HQ397_10325 PF00535 Glycosyl transferase family 2 HQ397_10330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ397_10330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ397_10330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ397_10330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ397_10335 PF00483 Nucleotidyl transferase HQ397_10335 PF01050 Mannose-6-phosphate isomerase HQ397_10340 PF00293 NUDIX domain HQ397_10345 PF01370 NAD dependent epimerase/dehydratase family HQ397_10350 PF16363 GDP-mannose 4,6 dehydratase HQ397_10370 PF13439 Glycosyltransferase Family 4 HQ397_10370 PF00534 Glycosyl transferases group 1 HQ397_10375 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_10410 PF00529 HlyD membrane-fusion protein of T1SS HQ397_10410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_10415 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ397_10415 PF00440 Bacterial regulatory proteins, tetR family HQ397_10435 PF00849 RNA pseudouridylate synthase HQ397_10435 PF01479 S4 domain HQ397_10440 PF04079 Segregation and condensation complex subunit ScpB HQ397_10450 PF01300 Telomere recombination HQ397_10455 PF02811 PHP domain HQ397_10460 PF00425 chorismate binding enzyme HQ397_10460 PF04715 Anthranilate synthase component I, N terminal region HQ397_10465 PF02885 Glycosyl transferase family, helical bundle domain HQ397_10465 PF00117 Glutamine amidotransferase class-I HQ397_10465 PF00591 Glycosyl transferase family, a/b domain HQ397_10470 PF02885 Glycosyl transferase family, helical bundle domain HQ397_10470 PF00591 Glycosyl transferase family, a/b domain HQ397_10475 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HQ397_10475 PF00218 Indole-3-glycerol phosphate synthase HQ397_10480 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_10485 PF00290 Tryptophan synthase alpha chain HQ397_10545 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_10545 PF07670 Nucleoside recognition HQ397_10545 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_10560 PF05656 Protein of unknown function (DUF805) HQ397_10575 PF07690 Major Facilitator Superfamily HQ397_10580 PF01040 UbiA prenyltransferase family HQ397_10585 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HQ397_10590 PF00510 Cytochrome c oxidase subunit III HQ397_10595 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ397_10600 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HQ397_10600 PF06481 COX Aromatic Rich Motif HQ397_10610 PF00034 Cytochrome c HQ397_10610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ397_10620 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ397_10640 PF00127 Copper binding proteins, plastocyanin/azurin family HQ397_10645 PF02424 ApbE family HQ397_10650 PF07690 Major Facilitator Superfamily HQ397_10665 PF03372 Endonuclease/Exonuclease/phosphatase family HQ397_10670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_10675 PF00873 AcrB/AcrD/AcrF family HQ397_10685 PF00529 HlyD membrane-fusion protein of T1SS HQ397_10685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_10690 PF00873 AcrB/AcrD/AcrF family HQ397_10710 PF03099 Biotin/lipoate A/B protein ligase family HQ397_10710 PF10437 Bacterial lipoate protein ligase C-terminus HQ397_10715 PF00990 Diguanylate cyclase, GGDEF domain HQ397_10715 PF03707 Bacterial signalling protein N terminal repeat HQ397_10715 PF00563 EAL domain HQ397_10720 PF00873 AcrB/AcrD/AcrF family HQ397_10735 PF04143 Sulphur transport HQ397_10740 PF01022 Bacterial regulatory protein, arsR family HQ397_10755 PF02308 MgtC family HQ397_10760 PF00356 Bacterial regulatory proteins, lacI family HQ397_10760 PF13407 Periplasmic binding protein domain HQ397_10765 PF08244 Glycosyl hydrolases family 32 C terminal HQ397_10765 PF00251 Glycosyl hydrolases family 32 N-terminal domain HQ397_10770 PF00367 phosphotransferase system, EIIB HQ397_10770 PF02378 Phosphotransferase system, EIIC HQ397_10775 PF00294 pfkB family carbohydrate kinase HQ397_10780 PF02264 LamB porin HQ397_10780 PF11471 Maltoporin periplasmic N-terminal extension HQ397_10785 PF00684 DnaJ central domain HQ397_10785 PF01556 DnaJ C terminal domain HQ397_10785 PF00226 DnaJ domain HQ397_10790 PF00012 Hsp70 protein HQ397_10795 PF01025 GrpE HQ397_10800 PF01513 ATP-NAD kinase HQ397_10805 PF02463 RecF/RecN/SMC N terminal domain HQ397_10810 PF01368 DHH family HQ397_10810 PF02833 DHHA2 domain HQ397_10820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_10825 PF02687 FtsX-like permease family HQ397_10825 PF00005 ABC transporter HQ397_10825 PF12704 MacB-like periplasmic core domain HQ397_10830 PF02321 Outer membrane efflux protein HQ397_10835 PF08021 Siderophore-interacting FAD-binding domain HQ397_10835 PF04954 Siderophore-interacting protein HQ397_10840 PF00793 DAHP synthetase I family HQ397_10845 PF00816 H-NS histone family HQ397_10860 PF01266 FAD dependent oxidoreductase HQ397_10865 PF01381 Helix-turn-helix HQ397_10865 PF07883 Cupin domain HQ397_10870 PF00171 Aldehyde dehydrogenase family HQ397_10875 PF00202 Aminotransferase class-III HQ397_10880 PF00324 Amino acid permease HQ397_10890 PF13520 Amino acid permease HQ397_10900 PF02690 Na+/Pi-cotransporter HQ397_10905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_10905 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ397_10910 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HQ397_10915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_10915 PF00512 His Kinase A (phospho-acceptor) domain HQ397_10915 PF01627 Hpt domain HQ397_10915 PF00989 PAS fold HQ397_10915 PF00072 Response regulator receiver domain HQ397_10915 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_10930 PF01048 Phosphorylase superfamily HQ397_10950 PF12848 ABC transporter HQ397_10950 PF00005 ABC transporter HQ397_10965 PF13474 SnoaL-like domain HQ397_10970 PF14821 Threonine synthase N terminus HQ397_10970 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_10975 PF00288 GHMP kinases N terminal domain HQ397_10975 PF08544 GHMP kinases C terminal HQ397_10980 PF03447 Homoserine dehydrogenase, NAD binding domain HQ397_10980 PF00742 Homoserine dehydrogenase HQ397_10980 PF13840 ACT domain HQ397_10980 PF01842 ACT domain HQ397_10980 PF00696 Amino acid kinase family HQ397_10985 PF00588 SpoU rRNA Methylase family HQ397_10990 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HQ397_11005 PF03737 Aldolase/RraA HQ397_11015 PF00486 Transcriptional regulatory protein, C terminal HQ397_11015 PF00072 Response regulator receiver domain HQ397_11030 PF00664 ABC transporter transmembrane region HQ397_11030 PF00005 ABC transporter HQ397_11035 PF00664 ABC transporter transmembrane region HQ397_11035 PF00005 ABC transporter HQ397_11055 PF01980 tRNA-methyltransferase O HQ397_11055 PF18389 TrmO C-terminal domain HQ397_11060 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ397_11060 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ397_11070 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_11070 PF07724 AAA domain (Cdc48 subfamily) HQ397_11070 PF17871 AAA lid domain HQ397_11070 PF02861 Clp amino terminal domain, pathogenicity island component HQ397_11070 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_11075 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_11080 PF00381 PTS HPr component phosphorylation site HQ397_11085 PF05524 PEP-utilising enzyme, N-terminal HQ397_11085 PF00391 PEP-utilising enzyme, mobile domain HQ397_11085 PF02896 PEP-utilising enzyme, TIM barrel domain HQ397_11090 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ397_11095 PF00990 Diguanylate cyclase, GGDEF domain HQ397_11105 PF01292 Prokaryotic cytochrome b561 HQ397_11120 PF13476 AAA domain HQ397_11125 PF00149 Calcineurin-like phosphoesterase HQ397_11125 PF12320 Type 5 capsule protein repressor C-terminal domain HQ397_11135 PF04381 Putative exonuclease, RdgC HQ397_11145 PF02254 TrkA-N domain HQ397_11145 PF00999 Sodium/hydrogen exchanger family HQ397_11150 PF04389 Peptidase family M28 HQ397_11150 PF04151 Bacterial pre-peptidase C-terminal domain HQ397_11155 PF00224 Pyruvate kinase, barrel domain HQ397_11155 PF02887 Pyruvate kinase, alpha/beta domain HQ397_11160 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ397_11160 PF12795 Mechanosensitive ion channel porin domain HQ397_11160 PF00924 Mechanosensitive ion channel HQ397_11190 PF03949 Malic enzyme, NAD binding domain HQ397_11190 PF00390 Malic enzyme, N-terminal domain HQ397_11195 PF00072 Response regulator receiver domain HQ397_11205 PF13247 4Fe-4S dicluster domain HQ397_11210 PF01568 Molydopterin dinucleotide binding domain HQ397_11210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ397_11210 PF01568 Molydopterin dinucleotide binding domain HQ397_11210 PF00384 Molybdopterin oxidoreductase HQ397_11210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_11210 PF12838 4Fe-4S dicluster domain HQ397_11210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_11210 PF00384 Molybdopterin oxidoreductase HQ397_11210 PF12838 4Fe-4S dicluster domain HQ397_11210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ397_11245 PF01043 SecA preprotein cross-linking domain HQ397_11245 PF07517 SecA DEAD-like domain HQ397_11245 PF02810 SEC-C motif HQ397_11245 PF07516 SecA Wing and Scaffold domain HQ397_11250 PF02634 FdhD/NarQ family HQ397_11260 PF00989 PAS fold HQ397_11260 PF00512 His Kinase A (phospho-acceptor) domain HQ397_11260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_11265 PF02954 Bacterial regulatory protein, Fis family HQ397_11265 PF00072 Response regulator receiver domain HQ397_11265 PF00158 Sigma-54 interaction domain HQ397_11270 PF12849 PBP superfamily domain HQ397_11275 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_11280 PF00005 ABC transporter HQ397_11285 PF12804 MobA-like NTP transferase domain HQ397_11290 PF03454 MoeA C-terminal region (domain IV) HQ397_11290 PF00994 Probable molybdopterin binding domain HQ397_11290 PF03453 MoeA N-terminal region (domain I and II) HQ397_11295 PF04632 Fusaric acid resistance protein family HQ397_11310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_11310 PF08447 PAS fold HQ397_11310 PF13426 PAS domain HQ397_11330 PF05114 Protein of unknown function (DUF692) HQ397_11340 PF10725 Protein of unknown function (DUF2517) HQ397_11365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_11370 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_11375 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_11375 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_11385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_11385 PF00005 ABC transporter HQ397_11395 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ397_11405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_11405 PF08447 PAS fold HQ397_11420 PF01396 Topoisomerase DNA binding C4 zinc finger HQ397_11420 PF08272 Topoisomerase I zinc-ribbon-like HQ397_11420 PF01131 DNA topoisomerase HQ397_11420 PF01751 Toprim domain HQ397_11425 PF04996 Succinylarginine dihydrolase HQ397_11430 PF08496 Peptidase family S49 N-terminal HQ397_11430 PF01343 Peptidase family S49 HQ397_11435 PF00106 short chain dehydrogenase HQ397_11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_11440 PF03466 LysR substrate binding domain HQ397_11445 PF07690 Major Facilitator Superfamily HQ397_11450 PF00155 Aminotransferase class I and II HQ397_11460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_11460 PF03466 LysR substrate binding domain HQ397_11465 PF00709 Adenylosuccinate synthetase HQ397_11470 PF01161 Phosphatidylethanolamine-binding protein HQ397_11480 PF01204 Trehalase HQ397_11485 PF00579 tRNA synthetases class I (W and Y) HQ397_11490 PF01551 Peptidase family M23 HQ397_11490 PF01476 LysM domain HQ397_11490 PF08525 Opacity-associated protein A N-terminal motif HQ397_11495 PF03702 Anhydro-N-acetylmuramic acid kinase HQ397_11500 PF01965 DJ-1/PfpI family HQ397_11505 PF01042 Endoribonuclease L-PSP HQ397_11515 PF00456 Transketolase, thiamine diphosphate binding domain HQ397_11515 PF02780 Transketolase, C-terminal domain HQ397_11515 PF02779 Transketolase, pyrimidine binding domain HQ397_11520 PF00438 S-adenosylmethionine synthetase, N-terminal domain HQ397_11520 PF02772 S-adenosylmethionine synthetase, central domain HQ397_11520 PF02773 S-adenosylmethionine synthetase, C-terminal domain HQ397_11525 PF17283 SprT-like zinc ribbon domain HQ397_11525 PF10263 SprT-like family HQ397_11530 PF04231 Endonuclease I HQ397_11535 PF04452 RNA methyltransferase HQ397_11540 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HQ397_11540 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HQ397_11545 PF00672 HAMP domain HQ397_11545 PF12729 Four helix bundle sensory module for signal transduction HQ397_11545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_11550 PF02622 Uncharacterized ACR, COG1678 HQ397_11555 PF03652 Holliday junction resolvase HQ397_11560 PF00854 POT family HQ397_11570 PF07726 ATPase family associated with various cellular activities (AAA) HQ397_11570 PF17863 AAA lid domain HQ397_11580 PF11992 Domain of unknown function (DUF3488) HQ397_11580 PF13559 Domain of unknown function (DUF4129) HQ397_11580 PF01841 Transglutaminase-like superfamily HQ397_11590 PF01235 Sodium:alanine symporter family HQ397_11595 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ397_11610 PF03167 Uracil DNA glycosylase superfamily HQ397_11615 PF01228 Glycine radical HQ397_11620 PF00375 Sodium:dicarboxylate symporter family HQ397_11625 PF00793 DAHP synthetase I family HQ397_11630 PF13369 Transglutaminase-like superfamily HQ397_11640 PF13847 Methyltransferase domain HQ397_11640 PF17827 PrmC N-terminal domain HQ397_11645 PF03462 PCRF domain HQ397_11645 PF00472 RF-1 domain HQ397_11650 PF01488 Shikimate / quinate 5-dehydrogenase HQ397_11650 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HQ397_11650 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HQ397_11655 PF03550 Outer membrane lipoprotein LolB HQ397_11660 PF08544 GHMP kinases C terminal HQ397_11660 PF00288 GHMP kinases N terminal domain HQ397_11670 PF14572 Phosphoribosyl synthetase-associated domain HQ397_11670 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HQ397_11675 PF02872 5'-nucleotidase, C-terminal domain HQ397_11675 PF00149 Calcineurin-like phosphoesterase HQ397_11680 PF01195 Peptidyl-tRNA hydrolase HQ397_11685 PF01926 50S ribosome-binding GTPase HQ397_11685 PF06071 Protein of unknown function (DUF933) HQ397_11730 PF03600 Citrate transporter HQ397_11730 PF02080 TrkA-C domain HQ397_11735 PF04973 Nicotinamide mononucleotide transporter HQ397_11750 PF04266 ASCH domain HQ397_11760 PF00128 Alpha amylase, catalytic domain HQ397_11760 PF16657 Maltogenic Amylase, C-terminal domain HQ397_11775 PF07690 Major Facilitator Superfamily HQ397_11780 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ397_11780 PF10371 Domain of unknown function HQ397_11780 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ397_11780 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ397_11780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_11785 PF07690 Major Facilitator Superfamily HQ397_11790 PF13419 Haloacid dehalogenase-like hydrolase HQ397_11800 PF00171 Aldehyde dehydrogenase family HQ397_11805 PF04958 Arginine N-succinyltransferase beta subunit HQ397_11810 PF00202 Aminotransferase class-III HQ397_11815 PF00117 Glutamine amidotransferase class-I HQ397_11825 PF00579 tRNA synthetases class I (W and Y) HQ397_11830 PF13419 Haloacid dehalogenase-like hydrolase HQ397_11835 PF00834 Ribulose-phosphate 3 epimerase family HQ397_11845 PF02086 D12 class N6 adenine-specific DNA methyltransferase HQ397_11855 PF01761 3-dehydroquinate synthase HQ397_11860 PF01202 Shikimate kinase HQ397_11865 PF07660 Secretin and TonB N terminus short domain HQ397_11865 PF03958 Bacterial type II/III secretion system short domain HQ397_11865 PF11741 AMIN domain HQ397_11865 PF00263 Bacterial type II and III secretion system protein HQ397_11875 PF04350 Pilus assembly protein, PilO HQ397_11885 PF11104 Type IV pilus assembly protein PilM; HQ397_11890 PF17092 Penicillin-binding protein OB-like domain HQ397_11890 PF00912 Transglycosylase HQ397_11890 PF00905 Penicillin binding protein transpeptidase domain HQ397_11895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_11895 PF03466 LysR substrate binding domain HQ397_11900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_11900 PF00672 HAMP domain HQ397_11900 PF02743 Cache domain HQ397_11915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_11915 PF03466 LysR substrate binding domain HQ397_11930 PF08525 Opacity-associated protein A N-terminal motif HQ397_11930 PF01476 LysM domain HQ397_11930 PF01551 Peptidase family M23 HQ397_11940 PF00924 Mechanosensitive ion channel HQ397_11940 PF12795 Mechanosensitive ion channel porin domain HQ397_11940 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ397_11945 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ397_11950 PF00672 HAMP domain HQ397_11950 PF02743 Cache domain HQ397_11950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_11955 PF00890 FAD binding domain HQ397_11955 PF02910 Fumarate reductase flavoprotein C-term HQ397_11960 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ397_11960 PF13183 4Fe-4S dicluster domain HQ397_11965 PF02300 Fumarate reductase subunit C HQ397_11970 PF02313 Fumarate reductase subunit D HQ397_11990 PF06224 Winged helix DNA-binding domain HQ397_12005 PF00501 AMP-binding enzyme HQ397_12025 PF00072 Response regulator receiver domain HQ397_12025 PF00486 Transcriptional regulatory protein, C terminal HQ397_12030 PF00512 His Kinase A (phospho-acceptor) domain HQ397_12030 PF08521 Two-component sensor kinase N-terminal HQ397_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_12050 PF00478 IMP dehydrogenase / GMP reductase domain HQ397_12065 PF01132 Elongation factor P (EF-P) OB domain HQ397_12065 PF08207 Elongation factor P (EF-P) KOW-like domain HQ397_12065 PF09285 Elongation factor P, C-terminal HQ397_12070 PF09997 Predicted membrane protein (DUF2238) HQ397_12080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ397_12080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_12090 PF00990 Diguanylate cyclase, GGDEF domain HQ397_12100 PF13419 Haloacid dehalogenase-like hydrolase HQ397_12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_12110 PF03466 LysR substrate binding domain HQ397_12115 PF00990 Diguanylate cyclase, GGDEF domain HQ397_12115 PF05230 MASE2 domain HQ397_12120 PF00313 'Cold-shock' DNA-binding domain HQ397_12125 PF00857 Isochorismatase family HQ397_12130 PF01494 FAD binding domain HQ397_12135 PF00919 Uncharacterized protein family UPF0004 HQ397_12135 PF04055 Radical SAM superfamily HQ397_12135 PF01938 TRAM domain HQ397_12140 PF02562 PhoH-like protein HQ397_12145 PF02130 Uncharacterized protein family UPF0054 HQ397_12150 PF00571 CBS domain HQ397_12150 PF03471 Transporter associated domain HQ397_12155 PF00795 Carbon-nitrogen hydrolase HQ397_12160 PF07295 Zinc-ribbon containing domain HQ397_12165 PF08264 Anticodon-binding domain of tRNA HQ397_12165 PF00133 tRNA synthetases class I (I, L, M and V) HQ397_12165 PF13603 Leucyl-tRNA synthetase, Domain 2 HQ397_12180 PF01467 Cytidylyltransferase-like HQ397_12190 PF02590 Predicted SPOUT methyltransferase HQ397_12195 PF03717 Penicillin-binding Protein dimerisation domain HQ397_12195 PF00905 Penicillin binding protein transpeptidase domain HQ397_12200 PF01098 Cell cycle protein HQ397_12205 PF13406 Transglycosylase SLT domain HQ397_12210 PF03330 Lytic transglycolase HQ397_12210 PF05036 Sporulation related domain HQ397_12215 PF07943 Penicillin-binding protein 5, C-terminal domain HQ397_12215 PF00768 D-alanyl-D-alanine carboxypeptidase HQ397_12220 PF04359 Protein of unknown function (DUF493) HQ397_12225 PF03099 Biotin/lipoate A/B protein ligase family HQ397_12230 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HQ397_12230 PF04055 Radical SAM superfamily HQ397_12240 PF06821 Serine hydrolase HQ397_12245 PF02508 Rnf-Nqr subunit, membrane protein HQ397_12260 PF13411 MerR HTH family regulatory protein HQ397_12265 PF01368 DHH family HQ397_12265 PF02272 DHHA1 domain HQ397_12265 PF17768 RecJ OB domain HQ397_12270 PF10411 Disulfide bond isomerase protein N-terminus HQ397_12270 PF13098 Thioredoxin-like domain HQ397_12275 PF01741 Large-conductance mechanosensitive channel, MscL HQ397_12280 PF02899 Phage integrase, N-terminal SAM-like domain HQ397_12280 PF00589 Phage integrase family HQ397_12285 PF00258 Flavodoxin HQ397_12290 PF01523 Putative modulator of DNA gyrase HQ397_12295 PF01523 Putative modulator of DNA gyrase HQ397_12305 PF17969 L,D-transpeptidase C-terminal domain HQ397_12305 PF03734 L,D-transpeptidase catalytic domain HQ397_12310 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase HQ397_12315 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HQ397_12335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_12335 PF00384 Molybdopterin oxidoreductase HQ397_12335 PF01568 Molydopterin dinucleotide binding domain HQ397_12340 PF03916 Polysulphide reductase, NrfD HQ397_12350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_12350 PF00512 His Kinase A (phospho-acceptor) domain HQ397_12350 PF00989 PAS fold HQ397_12355 PF00196 Bacterial regulatory proteins, luxR family HQ397_12355 PF00072 Response regulator receiver domain HQ397_12360 PF07694 5TMR of 5TMR-LYT HQ397_12360 PF06580 Histidine kinase HQ397_12365 PF04397 LytTr DNA-binding domain HQ397_12365 PF00072 Response regulator receiver domain HQ397_12370 PF02554 Carbon starvation protein CstA HQ397_12370 PF13722 5TM C-terminal transporter carbon starvation CstA HQ397_12375 PF03575 Peptidase family S51 HQ397_12380 PF10415 Fumarase C C-terminus HQ397_12380 PF00206 Lyase HQ397_12390 PF02635 DsrE/DsrF-like family HQ397_12395 PF00563 EAL domain HQ397_12395 PF03707 Bacterial signalling protein N terminal repeat HQ397_12395 PF00990 Diguanylate cyclase, GGDEF domain HQ397_12400 PF07690 Major Facilitator Superfamily HQ397_12405 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HQ397_12405 PF01138 3' exoribonuclease family, domain 1 HQ397_12405 PF03725 3' exoribonuclease family, domain 2 HQ397_12405 PF00575 S1 RNA binding domain HQ397_12405 PF00013 KH domain HQ397_12410 PF00312 Ribosomal protein S15 HQ397_12415 PF09157 Pseudouridine synthase II TruB, C-terminal HQ397_12415 PF16198 tRNA pseudouridylate synthase B C-terminal domain HQ397_12415 PF01509 TruB family pseudouridylate synthase (N terminal domain) HQ397_12420 PF02033 Ribosome-binding factor A HQ397_12425 PF11987 Translation-initiation factor 2 HQ397_12425 PF08364 Bacterial translation initiation factor IF-2 associated region HQ397_12425 PF04760 Translation initiation factor IF-2, N-terminal region HQ397_12425 PF00009 Elongation factor Tu GTP binding domain HQ397_12430 PF13184 NusA-like KH domain HQ397_12430 PF08529 NusA N-terminal domain HQ397_12430 PF00575 S1 RNA binding domain HQ397_12435 PF02576 RimP N-terminal domain HQ397_12435 PF17384 RimP C-terminal SH3 domain HQ397_12450 PF03840 Preprotein translocase SecG subunit HQ397_12455 PF00121 Triosephosphate isomerase HQ397_12460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ397_12460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ397_12460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ397_12460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ397_12465 PF00809 Pterin binding enzyme HQ397_12470 PF06480 FtsH Extracellular HQ397_12470 PF01434 Peptidase family M41 HQ397_12470 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_12470 PF17862 AAA+ lid domain HQ397_12475 PF01728 FtsJ-like methyltransferase HQ397_12480 PF01985 CRS1 / YhbY (CRM) domain HQ397_12495 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ397_12495 PF00691 OmpA family HQ397_12500 PF01618 MotA/TolQ/ExbB proton channel family HQ397_12505 PF02609 Exonuclease VII small subunit HQ397_12510 PF00348 Polyprenyl synthetase HQ397_12515 PF02779 Transketolase, pyrimidine binding domain HQ397_12515 PF02780 Transketolase, C-terminal domain HQ397_12515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HQ397_12520 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_12520 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_12525 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_12530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_12535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_12535 PF00005 ABC transporter HQ397_12540 PF04608 Phosphatidylglycerophosphatase A HQ397_12545 PF00586 AIR synthase related protein, N-terminal domain HQ397_12545 PF02769 AIR synthase related protein, C-terminal domain HQ397_12550 PF01029 NusB family HQ397_12555 PF00885 6,7-dimethyl-8-ribityllumazine synthase HQ397_12565 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ397_12565 PF00925 GTP cyclohydrolase II HQ397_12570 PF00677 Lumazine binding domain HQ397_12575 PF01872 RibD C-terminal domain HQ397_12575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ397_12580 PF03477 ATP cone domain HQ397_12590 PF00464 Serine hydroxymethyltransferase HQ397_12605 PF02613 Nitrate reductase delta subunit HQ397_12625 PF13188 PAS domain HQ397_12625 PF03707 Bacterial signalling protein N terminal repeat HQ397_12625 PF00990 Diguanylate cyclase, GGDEF domain HQ397_12625 PF00563 EAL domain HQ397_12635 PF16177 Acetyl-coenzyme A synthetase N-terminus HQ397_12635 PF13193 AMP-binding enzyme C-terminal domain HQ397_12635 PF00501 AMP-binding enzyme HQ397_12640 PF01220 Dehydroquinase class II HQ397_12645 PF00364 Biotin-requiring enzyme HQ397_12650 PF02785 Biotin carboxylase C-terminal domain HQ397_12650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ397_12650 PF00289 Biotin carboxylase, N-terminal domain HQ397_12660 PF00474 Sodium:solute symporter family HQ397_12665 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ397_12665 PF00367 phosphotransferase system, EIIB HQ397_12665 PF02378 Phosphotransferase system, EIIC HQ397_12675 PF08240 Alcohol dehydrogenase GroES-like domain HQ397_12675 PF00107 Zinc-binding dehydrogenase HQ397_12690 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_12690 PF12464 Maltose acetyltransferase HQ397_12695 PF00881 Nitroreductase family HQ397_12700 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ397_12700 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_12705 PF01343 Peptidase family S49 HQ397_12720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ397_12720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ397_12725 PF07023 Protein of unknown function (DUF1315) HQ397_12730 PF00710 Asparaginase, N-terminal HQ397_12730 PF17763 Glutaminase/Asparaginase C-terminal domain HQ397_12735 PF03616 Sodium/glutamate symporter HQ397_12740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_12740 PF00672 HAMP domain HQ397_12740 PF02743 Cache domain HQ397_12750 PF01336 OB-fold nucleic acid binding domain HQ397_12750 PF00152 tRNA synthetases class II (D, K and N) HQ397_12755 PF02567 Phenazine biosynthesis-like protein HQ397_12760 PF00667 FAD binding domain HQ397_12760 PF00175 Oxidoreductase NAD-binding domain HQ397_12760 PF00258 Flavodoxin HQ397_12765 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ397_12765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ397_12770 PF01507 Phosphoadenosine phosphosulfate reductase family HQ397_12775 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HQ397_12780 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_12785 PF00005 ABC transporter HQ397_12785 PF00571 CBS domain HQ397_12790 PF00186 Dihydrofolate reductase HQ397_12795 PF12821 Threonine/Serine exporter, ThrE HQ397_12800 PF06738 Putative threonine/serine exporter HQ397_12810 PF00994 Probable molybdopterin binding domain HQ397_12820 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_12820 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_12835 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_12835 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_12860 PF00221 Aromatic amino acid lyase HQ397_12870 PF07977 FabA-like domain HQ397_12875 PF00501 AMP-binding enzyme HQ397_12875 PF13193 AMP-binding enzyme C-terminal domain HQ397_12885 PF00550 Phosphopantetheine attachment site HQ397_12890 PF00550 Phosphopantetheine attachment site HQ397_12925 PF00034 Cytochrome c HQ397_12925 PF03150 Di-haem cytochrome c peroxidase HQ397_12935 PF04227 Indigoidine synthase A like protein HQ397_12940 PF00294 pfkB family carbohydrate kinase HQ397_12960 PF00582 Universal stress protein family HQ397_12970 PF00171 Aldehyde dehydrogenase family HQ397_12975 PF00696 Amino acid kinase family HQ397_12975 PF01472 PUA domain HQ397_12980 PF07417 Sigma factor-binding transcriptional regulator Crl HQ397_12985 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HQ397_12990 PF00156 Phosphoribosyl transferase domain HQ397_12995 PF07687 Peptidase dimerisation domain HQ397_12995 PF01546 Peptidase family M20/M25/M40 HQ397_13000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_13000 PF00005 ABC transporter HQ397_13005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_13005 PF00005 ABC transporter HQ397_13015 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_13015 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_13020 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_13025 PF07715 TonB-dependent Receptor Plug Domain HQ397_13025 PF00593 TonB dependent receptor HQ397_13035 PF01618 MotA/TolQ/ExbB proton channel family HQ397_13040 PF01618 MotA/TolQ/ExbB proton channel family HQ397_13045 PF02472 Biopolymer transport protein ExbD/TolR HQ397_13060 PF06483 Chitinase C HQ397_13060 PF00704 Glycosyl hydrolases family 18 HQ397_13095 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ397_13100 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ397_13105 PF00672 HAMP domain HQ397_13105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_13115 PF00313 'Cold-shock' DNA-binding domain HQ397_13155 PF00929 Exonuclease HQ397_13160 PF03193 RsgA GTPase HQ397_13165 PF02666 Phosphatidylserine decarboxylase HQ397_13170 PF09905 DNA-binding protein VF530 HQ397_13185 PF04224 Protein of unknown function, DUF417 HQ397_13190 PF02627 Carboxymuconolactone decarboxylase family HQ397_13205 PF00563 EAL domain HQ397_13205 PF03707 Bacterial signalling protein N terminal repeat HQ397_13205 PF00990 Diguanylate cyclase, GGDEF domain HQ397_13210 PF06877 Regulator of ribonuclease activity B HQ397_13215 PF05547 Immune inhibitor A peptidase M6 HQ397_13215 PF00801 PKD domain HQ397_13230 PF00561 alpha/beta hydrolase fold HQ397_13235 PF00664 ABC transporter transmembrane region HQ397_13235 PF00005 ABC transporter HQ397_13240 PF06004 Bacterial protein of unknown function (DUF903) HQ397_13245 PF00082 Subtilase family HQ397_13245 PF05922 Peptidase inhibitor I9 HQ397_13250 PF00581 Rhodanese-like domain HQ397_13255 PF04960 Glutaminase HQ397_13260 PF04320 Protein with unknown function (DUF469) HQ397_13265 PF02390 Putative methyltransferase HQ397_13270 PF01483 Proprotein convertase P-domain HQ397_13270 PF04389 Peptidase family M28 HQ397_13275 PF00155 Aminotransferase class I and II HQ397_13280 PF12792 CSS motif domain associated with EAL HQ397_13280 PF00563 EAL domain HQ397_13285 PF01370 NAD dependent epimerase/dehydratase family HQ397_13285 PF08338 Domain of unknown function (DUF1731) HQ397_13295 PF00005 ABC transporter HQ397_13300 PF13472 GDSL-like Lipase/Acylhydrolase family HQ397_13305 PF01584 CheW-like domain HQ397_13305 PF00072 Response regulator receiver domain HQ397_13320 PF02080 TrkA-C domain HQ397_13320 PF06826 Predicted Permease Membrane Region HQ397_13325 PF03006 Haemolysin-III related HQ397_13330 PF00282 Pyridoxal-dependent decarboxylase conserved domain HQ397_13335 PF04279 Intracellular septation protein A HQ397_13340 PF03795 YCII-related domain HQ397_13345 PF00459 Inositol monophosphatase family HQ397_13355 PF00483 Nucleotidyl transferase HQ397_13360 PF00854 POT family HQ397_13365 PF00072 Response regulator receiver domain HQ397_13395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_13400 PF02321 Outer membrane efflux protein HQ397_13405 PF01207 Dihydrouridine synthase (Dus) HQ397_13410 PF02954 Bacterial regulatory protein, Fis family HQ397_13440 PF12137 RNA polymerase recycling family C-terminal HQ397_13440 PF18339 RapA N-terminal Tudor like domain 1 HQ397_13440 PF18337 RapA N-terminal Tudor like domain HQ397_13440 PF00176 SNF2 family N-terminal domain HQ397_13440 PF00271 Helicase conserved C-terminal domain HQ397_13445 PF00849 RNA pseudouridylate synthase HQ397_13455 PF00990 Diguanylate cyclase, GGDEF domain HQ397_13455 PF00563 EAL domain HQ397_13455 PF03707 Bacterial signalling protein N terminal repeat HQ397_13455 PF13188 PAS domain HQ397_13465 PF00118 TCP-1/cpn60 chaperonin family HQ397_13470 PF00166 Chaperonin 10 Kd subunit HQ397_13475 PF01554 MatE HQ397_13480 PF04186 FxsA cytoplasmic membrane protein HQ397_13485 PF00206 Lyase HQ397_13485 PF10415 Fumarase C C-terminus HQ397_13490 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ397_13495 PF00267 Gram-negative porin HQ397_13500 PF07690 Major Facilitator Superfamily HQ397_13505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_13505 PF03466 LysR substrate binding domain HQ397_13510 PF03413 Peptidase propeptide and YPEB domain HQ397_13510 PF04151 Bacterial pre-peptidase C-terminal domain HQ397_13510 PF02868 Thermolysin metallopeptidase, alpha-helical domain HQ397_13510 PF01447 Thermolysin metallopeptidase, catalytic domain HQ397_13510 PF07504 Fungalysin/Thermolysin Propeptide Motif HQ397_13515 PF13302 Acetyltransferase (GNAT) domain HQ397_13520 PF13302 Acetyltransferase (GNAT) domain HQ397_13535 PF07690 Major Facilitator Superfamily HQ397_13540 PF01725 Ham1 family HQ397_13545 PF06969 HemN C-terminal domain HQ397_13545 PF04055 Radical SAM superfamily HQ397_13550 PF03889 Alternative ribosome-rescue factor A HQ397_13555 PF01872 RibD C-terminal domain HQ397_13560 PF13411 MerR HTH family regulatory protein HQ397_13565 PF02142 MGS-like domain HQ397_13565 PF01808 AICARFT/IMPCHase bienzyme HQ397_13570 PF02843 Phosphoribosylglycinamide synthetase, C domain HQ397_13570 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HQ397_13570 PF02844 Phosphoribosylglycinamide synthetase, N domain HQ397_13595 PF04545 Sigma-70, region 4 HQ397_13595 PF04539 Sigma-70 region 3 HQ397_13595 PF04546 Sigma-70, non-essential region HQ397_13595 PF00140 Sigma-70 factor, region 1.2 HQ397_13595 PF03979 Sigma-70 factor, region 1.1 HQ397_13595 PF04542 Sigma-70 region 2 HQ397_13600 PF10410 DnaB-helicase binding domain of primase HQ397_13600 PF08278 DNA primase DnaG DnaB-binding HQ397_13600 PF01807 CHC2 zinc finger HQ397_13600 PF08275 DNA primase catalytic core, N-terminal domain HQ397_13605 PF09424 Yqey-like protein HQ397_13610 PF01165 Ribosomal protein S21 HQ397_13615 PF00814 Glycoprotease family HQ397_13620 PF00140 Sigma-70 factor, region 1.2 HQ397_13620 PF04542 Sigma-70 region 2 HQ397_13620 PF04539 Sigma-70 region 3 HQ397_13620 PF04545 Sigma-70, region 4 HQ397_13625 PF01476 LysM domain HQ397_13625 PF01551 Peptidase family M23 HQ397_13645 PF01142 tRNA pseudouridine synthase D (TruD) HQ397_13650 PF02542 YgbB family HQ397_13655 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HQ397_13660 PF04977 Septum formation initiator HQ397_13665 PF03952 Enolase, N-terminal domain HQ397_13665 PF00113 Enolase, C-terminal TIM barrel domain HQ397_13670 PF00117 Glutamine amidotransferase class-I HQ397_13670 PF06418 CTP synthase N-terminus HQ397_13675 PF03819 MazG nucleotide pyrophosphohydrolase domain HQ397_13680 PF02824 TGS domain HQ397_13680 PF13291 ACT domain HQ397_13680 PF04607 Region found in RelA / SpoT proteins HQ397_13685 PF05958 tRNA (Uracil-5-)-methyltransferase HQ397_13685 PF01938 TRAM domain HQ397_13690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ397_13690 PF01627 Hpt domain HQ397_13690 PF00512 His Kinase A (phospho-acceptor) domain HQ397_13690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_13690 PF00672 HAMP domain HQ397_13690 PF00072 Response regulator receiver domain HQ397_13695 PF07308 Protein of unknown function (DUF1456) HQ397_13710 PF08013 Tagatose 6 phosphate kinase HQ397_13715 PF01380 SIS domain HQ397_13720 PF03830 PTS system sorbose subfamily IIB component HQ397_13725 PF03609 PTS system sorbose-specific iic component HQ397_13730 PF03613 PTS system mannose/fructose/sorbose family IID component HQ397_13735 PF03610 PTS system fructose IIA component HQ397_13740 PF01979 Amidohydrolase family HQ397_13745 PF01116 Fructose-bisphosphate aldolase class-II HQ397_13755 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HQ397_13760 PF02565 Recombination protein O C terminal HQ397_13760 PF11967 Recombination protein O N terminal HQ397_13765 PF07650 KH domain HQ397_13765 PF01926 50S ribosome-binding GTPase HQ397_13770 PF00035 Double-stranded RNA binding motif HQ397_13770 PF14622 Ribonuclease-III-like HQ397_13775 PF10502 Signal peptidase, peptidase S26 HQ397_13780 PF00679 Elongation factor G C-terminus HQ397_13780 PF00009 Elongation factor Tu GTP binding domain HQ397_13780 PF03144 Elongation factor Tu domain 2 HQ397_13780 PF06421 GTP-binding protein LepA C-terminus HQ397_13790 PF17188 MucB/RseB C-terminal domain HQ397_13790 PF03888 MucB/RseB N-terminal domain HQ397_13795 PF03872 Anti sigma-E protein RseA, N-terminal domain HQ397_13795 PF03873 Anti sigma-E protein RseA, C-terminal domain HQ397_13800 PF08281 Sigma-70, region 4 HQ397_13800 PF04542 Sigma-70 region 2 HQ397_13805 PF02910 Fumarate reductase flavoprotein C-term HQ397_13805 PF00890 FAD binding domain HQ397_13815 PF03937 Flavinator of succinate dehydrogenase HQ397_13820 PF01571 Aminomethyltransferase folate-binding domain HQ397_13825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_13825 PF03466 LysR substrate binding domain HQ397_13840 PF03091 CutA1 divalent ion tolerance protein HQ397_13860 PF01266 FAD dependent oxidoreductase HQ397_13865 PF01116 Fructose-bisphosphate aldolase class-II HQ397_13870 PF00162 Phosphoglycerate kinase HQ397_13875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ397_13875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ397_13880 PF00480 ROK family HQ397_13885 PF01208 Uroporphyrinogen decarboxylase (URO-D) HQ397_13890 PF00293 NUDIX domain HQ397_13890 PF09297 NADH pyrophosphatase zinc ribbon domain HQ397_13895 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HQ397_13895 PF00171 Aldehyde dehydrogenase family HQ397_13895 PF01619 Proline dehydrogenase HQ397_13895 PF14850 DNA-binding domain of Proline dehydrogenase HQ397_13900 PF08239 Bacterial SH3 domain HQ397_13905 PF00027 Cyclic nucleotide-binding domain HQ397_13905 PF00520 Ion transport protein HQ397_13910 PF02743 Cache domain HQ397_13910 PF00672 HAMP domain HQ397_13910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_13920 PF08335 GlnD PII-uridylyltransferase HQ397_13920 PF03710 Glutamate-ammonia ligase adenylyltransferase HQ397_13940 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ397_13940 PF00326 Prolyl oligopeptidase family HQ397_13945 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_13950 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_13955 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_13960 PF00005 ABC transporter HQ397_13965 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_13970 PF02687 FtsX-like permease family HQ397_13970 PF12704 MacB-like periplasmic core domain HQ397_13970 PF00005 ABC transporter HQ397_13975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_13980 PF00072 Response regulator receiver domain HQ397_13980 PF00486 Transcriptional regulatory protein, C terminal HQ397_13985 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ397_13985 PF00672 HAMP domain HQ397_13985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_13985 PF00512 His Kinase A (phospho-acceptor) domain HQ397_13990 PF00293 NUDIX domain HQ397_13990 PF09297 NADH pyrophosphatase zinc ribbon domain HQ397_13990 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HQ397_14025 PF03060 Nitronate monooxygenase HQ397_14035 PF00445 Ribonuclease T2 family HQ397_14050 PF03150 Di-haem cytochrome c peroxidase HQ397_14055 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HQ397_14075 PF03466 LysR substrate binding domain HQ397_14075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_14080 PF03783 Curli production assembly/transport component CsgG HQ397_14090 PF05643 Putative bacterial lipoprotein (DUF799) HQ397_14095 PF00270 DEAD/DEAH box helicase HQ397_14095 PF00271 Helicase conserved C-terminal domain HQ397_14105 PF00753 Metallo-beta-lactamase superfamily HQ397_14120 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ397_14125 PF03466 LysR substrate binding domain HQ397_14125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_14130 PF04480 Protein of unknown function (DUF559) HQ397_14140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ397_14145 PF00583 Acetyltransferase (GNAT) family HQ397_14160 PF00583 Acetyltransferase (GNAT) family HQ397_14175 PF00072 Response regulator receiver domain HQ397_14175 PF00990 Diguanylate cyclase, GGDEF domain HQ397_14190 PF17868 AAA lid domain HQ397_14190 PF12592 Protein of unknown function (DUF3763) HQ397_14190 PF07728 AAA domain (dynein-related subfamily) HQ397_14200 PF00583 Acetyltransferase (GNAT) family HQ397_14210 PF00501 AMP-binding enzyme HQ397_14220 PF04262 Glutamate-cysteine ligase HQ397_14225 PF05193 Peptidase M16 inactive domain HQ397_14225 PF00675 Insulinase (Peptidase family M16) HQ397_14230 PF09335 SNARE associated Golgi protein HQ397_14235 PF00550 Phosphopantetheine attachment site HQ397_14235 PF08240 Alcohol dehydrogenase GroES-like domain HQ397_14235 PF00698 Acyl transferase domain HQ397_14235 PF08659 KR domain HQ397_14235 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_14235 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_14235 PF14765 Polyketide synthase dehydratase HQ397_14235 PF16197 Ketoacyl-synthetase C-terminal extension HQ397_14235 PF08990 Erythronolide synthase docking HQ397_14255 PF00970 Oxidoreductase FAD-binding domain HQ397_14255 PF00175 Oxidoreductase NAD-binding domain HQ397_14260 PF03948 Ribosomal protein L9, C-terminal domain HQ397_14260 PF01281 Ribosomal protein L9, N-terminal domain HQ397_14265 PF01084 Ribosomal protein S18 HQ397_14270 PF01250 Ribosomal protein S6 HQ397_14275 PF01566 Natural resistance-associated macrophage protein HQ397_14295 PF13673 Acetyltransferase (GNAT) domain HQ397_14305 PF08032 RNA 2'-O ribose methyltransferase substrate binding HQ397_14305 PF00588 SpoU rRNA Methylase family HQ397_14340 PF00990 Diguanylate cyclase, GGDEF domain HQ397_14345 PF02664 S-Ribosylhomocysteinase (LuxS) HQ397_14355 PF00543 Nitrogen regulatory protein P-II HQ397_14360 PF02540 NAD synthase HQ397_14360 PF00795 Carbon-nitrogen hydrolase HQ397_14420 PF02401 LytB protein HQ397_14425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_14430 PF01252 Signal peptidase (SPase) II HQ397_14435 PF08264 Anticodon-binding domain of tRNA HQ397_14435 PF00133 tRNA synthetases class I (I, L, M and V) HQ397_14435 PF06827 Zinc finger found in FPG and IleRS HQ397_14440 PF01687 Riboflavin kinase HQ397_14440 PF06574 FAD synthetase HQ397_14450 PF01649 Ribosomal protein S20 HQ397_14455 PF01022 Bacterial regulatory protein, arsR family HQ397_14460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_14460 PF03466 LysR substrate binding domain HQ397_14470 PF06965 Na+/H+ antiporter 1 HQ397_14475 PF00303 Thymidylate synthase HQ397_14480 PF01790 Prolipoprotein diacylglyceryl transferase HQ397_14485 PF01590 GAF domain HQ397_14485 PF05524 PEP-utilising enzyme, N-terminal HQ397_14485 PF00391 PEP-utilising enzyme, mobile domain HQ397_14485 PF02896 PEP-utilising enzyme, TIM barrel domain HQ397_14490 PF00293 NUDIX domain HQ397_14495 PF02976 DNA mismatch repair enzyme MutH HQ397_14505 PF01245 Ribosomal protein L19 HQ397_14510 PF01746 tRNA (Guanine-1)-methyltransferase HQ397_14515 PF05239 PRC-barrel domain HQ397_14515 PF01782 RimM N-terminal domain HQ397_14520 PF00886 Ribosomal protein S16 HQ397_14525 PF00448 SRP54-type protein, GTPase domain HQ397_14525 PF02881 SRP54-type protein, helical bundle domain HQ397_14525 PF02978 Signal peptide binding domain HQ397_14530 PF01578 Cytochrome C assembly protein HQ397_14535 PF01595 Cyclin M transmembrane N-terminal domain HQ397_14535 PF03471 Transporter associated domain HQ397_14535 PF00571 CBS domain HQ397_14540 PF02082 Transcriptional regulator HQ397_14545 PF00175 Oxidoreductase NAD-binding domain HQ397_14545 PF00042 Globin HQ397_14545 PF00970 Oxidoreductase FAD-binding domain HQ397_14550 PF08238 Sel1 repeat HQ397_14555 PF00056 lactate/malate dehydrogenase, NAD binding domain HQ397_14555 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HQ397_14560 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_14565 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_14570 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_14575 PF00005 ABC transporter HQ397_14580 PF01316 Arginine repressor, DNA binding domain HQ397_14580 PF02863 Arginine repressor, C-terminal domain HQ397_14585 PF04261 Dyp-type peroxidase family HQ397_14590 PF00005 ABC transporter HQ397_14590 PF08402 TOBE domain HQ397_14600 PF13416 Bacterial extracellular solute-binding protein HQ397_14605 PF00543 Nitrogen regulatory protein P-II HQ397_14610 PF00472 RF-1 domain HQ397_14615 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ397_14615 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ397_14620 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_14620 PF07670 Nucleoside recognition HQ397_14620 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_14625 PF03466 LysR substrate binding domain HQ397_14625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_14630 PF00255 Glutathione peroxidase HQ397_14640 PF02595 Glycerate kinase family HQ397_14645 PF02447 GntP family permease HQ397_14650 PF05651 Putative sugar diacid recognition HQ397_14650 PF13556 PucR C-terminal helix-turn-helix domain HQ397_14650 PF17853 GGDEF-like domain HQ397_14655 PF06062 Uncharacterised protein family (UPF0231) HQ397_14670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_14670 PF08447 PAS fold HQ397_14675 PF03372 Endonuclease/Exonuclease/phosphatase family HQ397_14690 PF00270 DEAD/DEAH box helicase HQ397_14690 PF00271 Helicase conserved C-terminal domain HQ397_14700 PF08534 Redoxin HQ397_14705 PF00403 Heavy-metal-associated domain HQ397_14725 PF02583 Metal-sensitive transcriptional repressor HQ397_14735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_14735 PF03466 LysR substrate binding domain HQ397_14745 PF04055 Radical SAM superfamily HQ397_14750 PF11230 Protein of unknown function (DUF3029) HQ397_14800 PF12729 Four helix bundle sensory module for signal transduction HQ397_14800 PF00672 HAMP domain HQ397_14800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_14815 PF00005 ABC transporter HQ397_14815 PF12857 TOBE-like domain HQ397_14820 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_14825 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_14840 PF13194 Domain of unknown function (DUF4010) HQ397_14845 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_14845 PF12464 Maltose acetyltransferase HQ397_14870 PF00206 Lyase HQ397_14870 PF14698 Argininosuccinate lyase C-terminal HQ397_14875 PF00764 Arginosuccinate synthase HQ397_14880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ397_14880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ397_14885 PF00696 Amino acid kinase family HQ397_14890 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ397_14890 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ397_14895 PF07687 Peptidase dimerisation domain HQ397_14895 PF01546 Peptidase family M20/M25/M40 HQ397_14900 PF00311 Phosphoenolpyruvate carboxylase HQ397_14910 PF03447 Homoserine dehydrogenase, NAD binding domain HQ397_14910 PF00742 Homoserine dehydrogenase HQ397_14910 PF00696 Amino acid kinase family HQ397_14915 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ397_14920 PF01340 Met Apo-repressor, MetJ HQ397_14925 PF12833 Helix-turn-helix domain HQ397_14925 PF06445 GyrI-like small molecule binding domain HQ397_14930 PF01588 Putative tRNA binding domain HQ397_14935 PF03222 Tryptophan/tyrosine permease family HQ397_14940 PF00459 Inositol monophosphatase family HQ397_14945 PF00293 NUDIX domain HQ397_14950 PF13419 Haloacid dehalogenase-like hydrolase HQ397_14955 PF01479 S4 domain HQ397_14955 PF00579 tRNA synthetases class I (W and Y) HQ397_14960 PF00196 Bacterial regulatory proteins, luxR family HQ397_14965 PF01203 Type II secretion system (T2SS), protein N HQ397_14970 PF04612 Type II secretion system (T2SS), protein M HQ397_14975 PF12693 GspL periplasmic domain HQ397_14975 PF05134 Type II secretion system (T2SS), protein L HQ397_14980 PF03934 Type II secretion system (T2SS), protein K HQ397_14985 PF07963 Prokaryotic N-terminal methylation motif HQ397_14985 PF11612 Type II secretion system (T2SS), protein J HQ397_14990 PF07963 Prokaryotic N-terminal methylation motif HQ397_14990 PF02501 Type II secretion system (T2SS), protein I HQ397_14995 PF12019 Type II transport protein GspH HQ397_14995 PF07963 Prokaryotic N-terminal methylation motif HQ397_15005 PF08334 Type II secretion system (T2SS), protein G HQ397_15005 PF07963 Prokaryotic N-terminal methylation motif HQ397_15010 PF00482 Type II secretion system (T2SS), protein F HQ397_15015 PF00437 Type II/IV secretion system protein HQ397_15020 PF03958 Bacterial type II/III secretion system short domain HQ397_15020 PF00263 Bacterial type II and III secretion system protein HQ397_15025 PF11356 Type II secretion system protein C HQ397_15030 PF01479 S4 domain HQ397_15035 PF01430 Hsp33 protein HQ397_15040 PF01293 Phosphoenolpyruvate carboxykinase HQ397_15045 PF00392 Bacterial regulatory proteins, gntR family HQ397_15050 PF00557 Metallopeptidase family M24 HQ397_15050 PF01321 Creatinase/Prolidase N-terminal domain HQ397_15055 PF11756 Nitrous oxide-stimulated promoter HQ397_15060 PF00583 Acetyltransferase (GNAT) family HQ397_15065 PF05433 Glycine zipper 2TM domain HQ397_15070 PF00149 Calcineurin-like phosphoesterase HQ397_15070 PF02872 5'-nucleotidase, C-terminal domain HQ397_15075 PF01810 LysE type translocator HQ397_15080 PF00196 Bacterial regulatory proteins, luxR family HQ397_15080 PF03472 Autoinducer binding domain HQ397_15085 PF00765 Autoinducer synthase HQ397_15090 PF03466 LysR substrate binding domain HQ397_15090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_15095 PF08206 Ribonuclease B OB domain HQ397_15095 PF17876 Cold shock domain HQ397_15095 PF00773 RNB domain HQ397_15105 PF00440 Bacterial regulatory proteins, tetR family HQ397_15115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_15115 PF02378 Phosphotransferase system, EIIC HQ397_15115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ397_15120 PF01232 Mannitol dehydrogenase Rossmann domain HQ397_15120 PF08125 Mannitol dehydrogenase C-terminal domain HQ397_15125 PF05068 Mannitol repressor HQ397_15130 PF03471 Transporter associated domain HQ397_15130 PF00999 Sodium/hydrogen exchanger family HQ397_15130 PF02080 TrkA-C domain HQ397_15150 PF01544 CorA-like Mg2+ transporter protein HQ397_15155 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HQ397_15170 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ397_15175 PF07670 Nucleoside recognition HQ397_15175 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_15175 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_15180 PF00271 Helicase conserved C-terminal domain HQ397_15180 PF00270 DEAD/DEAH box helicase HQ397_15180 PF03880 DbpA RNA binding domain HQ397_15205 PF01040 UbiA prenyltransferase family HQ397_15215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ397_15215 PF16582 Middle domain of thiamine pyrophosphate HQ397_15215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_15220 PF12697 Alpha/beta hydrolase family HQ397_15225 PF00378 Enoyl-CoA hydratase/isomerase HQ397_15230 PF13378 Enolase C-terminal domain-like HQ397_15235 PF00501 AMP-binding enzyme HQ397_15245 PF00419 Fimbrial protein HQ397_15255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HQ397_15255 PF02753 Pili assembly chaperone PapD, C-terminal domain HQ397_15260 PF00577 Outer membrane usher protein HQ397_15260 PF13954 PapC N-terminal domain HQ397_15260 PF13953 PapC C-terminal domain HQ397_15270 PF00419 Fimbrial protein HQ397_15280 PF01752 Collagenase HQ397_15280 PF08453 Peptidase family M9 N-terminal HQ397_15285 PF02698 DUF218 domain HQ397_15290 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ397_15290 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ397_15300 PF00561 alpha/beta hydrolase fold HQ397_15305 PF03280 Proteobacterial lipase chaperone protein HQ397_15320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_15320 PF12793 Sugar transport-related sRNA regulator N-term HQ397_15330 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ397_15340 PF00465 Iron-containing alcohol dehydrogenase HQ397_15355 PF03577 Peptidase family C69 HQ397_15360 PF00106 short chain dehydrogenase HQ397_15380 PF02308 MgtC family HQ397_15385 PF00128 Alpha amylase, catalytic domain HQ397_15385 PF02903 Alpha amylase, N-terminal ig-like domain HQ397_15385 PF16657 Maltogenic Amylase, C-terminal domain HQ397_15400 PF00884 Sulfatase HQ397_15405 PF01037 Lrp/AsnC ligand binding domain HQ397_15415 PF04204 Homoserine O-succinyltransferase HQ397_15420 PF00013 KH domain HQ397_15420 PF01966 HD domain HQ397_15420 PF12072 Domain of unknown function (DUF3552) HQ397_15425 PF02464 Competence-damaged protein HQ397_15425 PF00994 Probable molybdopterin binding domain HQ397_15435 PF00005 ABC transporter HQ397_15455 PF07722 Peptidase C26 HQ397_15475 PF13419 Haloacid dehalogenase-like hydrolase HQ397_15480 PF02899 Phage integrase, N-terminal SAM-like domain HQ397_15480 PF00589 Phage integrase family HQ397_15490 PF01678 Diaminopimelate epimerase HQ397_15495 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ397_15495 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ397_15505 PF01491 Frataxin-like domain HQ397_15510 PF02230 Phospholipase/Carboxylesterase HQ397_15515 PF12633 Adenylate cyclase NT domain HQ397_15515 PF01295 Adenylate cyclase, class-I HQ397_15520 PF03900 Porphobilinogen deaminase, C-terminal domain HQ397_15520 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HQ397_15525 PF02602 Uroporphyrinogen-III synthase HemD HQ397_15530 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HQ397_15540 PF03692 Putative zinc- or iron-chelating domain HQ397_15545 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HQ397_15560 PF07715 TonB-dependent Receptor Plug Domain HQ397_15560 PF00593 TonB dependent receptor HQ397_15585 PF01638 HxlR-like helix-turn-helix HQ397_15590 PF08803 Putative mono-oxygenase ydhR HQ397_15605 PF06055 Exopolysaccharide synthesis, ExoD HQ397_15615 PF00990 Diguanylate cyclase, GGDEF domain HQ397_15635 PF13036 Peptidoglycan-synthase activator LpoB HQ397_15650 PF04055 Radical SAM superfamily HQ397_15650 PF06968 Biotin and Thiamin Synthesis associated domain HQ397_15655 PF05690 Thiazole biosynthesis protein ThiG HQ397_15665 PF00899 ThiF family HQ397_15670 PF02581 Thiamine monophosphate synthase HQ397_15675 PF13667 ThiC-associated domain HQ397_15675 PF01964 Radical SAM ThiC family HQ397_15680 PF03738 Glutathionylspermidine synthase preATP-grasp HQ397_15710 PF00072 Response regulator receiver domain HQ397_15710 PF00486 Transcriptional regulatory protein, C terminal HQ397_15715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_15720 PF05525 Branched-chain amino acid transport protein HQ397_15725 PF08443 RimK-like ATP-grasp domain HQ397_15725 PF18030 RimK PreATP-grasp domain HQ397_15730 PF02310 B12 binding domain HQ397_15730 PF02607 B12 binding domain HQ397_15730 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ397_15730 PF00809 Pterin binding enzyme HQ397_15730 PF02574 Homocysteine S-methyltransferase HQ397_15735 PF00999 Sodium/hydrogen exchanger family HQ397_15750 PF08668 HDOD domain HQ397_15760 PF04228 Putative neutral zinc metallopeptidase HQ397_15765 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HQ397_15785 PF13426 PAS domain HQ397_15785 PF08447 PAS fold HQ397_15785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_15790 PF08678 Rsbr N terminal HQ397_15790 PF01740 STAS domain HQ397_15795 PF13581 Histidine kinase-like ATPase domain HQ397_15800 PF01627 Hpt domain HQ397_15800 PF00512 His Kinase A (phospho-acceptor) domain HQ397_15800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ397_15800 PF00672 HAMP domain HQ397_15800 PF00072 Response regulator receiver domain HQ397_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_15805 PF00072 Response regulator receiver domain HQ397_15815 PF07690 Major Facilitator Superfamily HQ397_15820 PF01914 MarC family integral membrane protein HQ397_15835 PF13580 SIS domain HQ397_15840 PF00367 phosphotransferase system, EIIB HQ397_15840 PF02378 Phosphotransferase system, EIIC HQ397_15860 PF01418 Helix-turn-helix domain, rpiR family HQ397_15860 PF01380 SIS domain HQ397_15865 PF01523 Putative modulator of DNA gyrase HQ397_15870 PF00795 Carbon-nitrogen hydrolase HQ397_15880 PF13502 AsmA-like C-terminal region HQ397_15880 PF13116 Protein of unknown function HQ397_15885 PF00575 S1 RNA binding domain HQ397_15885 PF10150 Ribonuclease E/G family HQ397_15890 PF02545 Maf-like protein HQ397_15895 PF04093 rod shape-determining protein MreD HQ397_15900 PF04085 rod shape-determining protein MreC HQ397_15930 PF07963 Prokaryotic N-terminal methylation motif HQ397_15930 PF00114 Pilin (bacterial filament) HQ397_15935 PF07963 Prokaryotic N-terminal methylation motif HQ397_15935 PF08334 Type II secretion system (T2SS), protein G HQ397_15940 PF07963 Prokaryotic N-terminal methylation motif HQ397_15950 PF00482 Type II secretion system (T2SS), protein F HQ397_15955 PF00437 Type II/IV secretion system protein HQ397_15955 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ397_15965 PF13401 AAA domain HQ397_15965 PF09077 Mu B transposition protein, C terminal HQ397_15970 PF03958 Bacterial type II/III secretion system short domain HQ397_15970 PF00263 Bacterial type II and III secretion system protein HQ397_16005 PF00563 EAL domain HQ397_16005 PF12792 CSS motif domain associated with EAL HQ397_16010 PF01699 Sodium/calcium exchanger protein HQ397_16015 PF00221 Aromatic amino acid lyase HQ397_16020 PF17391 Urocanase N-terminal domain HQ397_16020 PF17392 Urocanase C-terminal domain HQ397_16020 PF01175 Urocanase Rossmann-like domain HQ397_16025 PF00491 Arginase family HQ397_16030 PF01979 Amidohydrolase family HQ397_16035 PF07702 UTRA domain HQ397_16035 PF00392 Bacterial regulatory proteins, gntR family HQ397_16040 PF00484 Carbonic anhydrase HQ397_16045 PF00140 Sigma-70 factor, region 1.2 HQ397_16045 PF04542 Sigma-70 region 2 HQ397_16045 PF04545 Sigma-70, region 4 HQ397_16050 PF18075 FtsX extracellular domain HQ397_16055 PF00005 ABC transporter HQ397_16060 PF00448 SRP54-type protein, GTPase domain HQ397_16060 PF02881 SRP54-type protein, helical bundle domain HQ397_16075 PF07226 Protein of unknown function (DUF1422) HQ397_16080 PF00440 Bacterial regulatory proteins, tetR family HQ397_16090 PF13091 PLD-like domain HQ397_16100 PF01464 Transglycosylase SLT domain HQ397_16110 PF02416 mttA/Hcf106 family HQ397_16115 PF03466 LysR substrate binding domain HQ397_16115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_16120 PF01914 MarC family integral membrane protein HQ397_16125 PF10678 Protein of unknown function (DUF2492) HQ397_16130 PF00375 Sodium:dicarboxylate symporter family HQ397_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_16140 PF03466 LysR substrate binding domain HQ397_16145 PF13533 Biotin-lipoyl like HQ397_16150 PF07690 Major Facilitator Superfamily HQ397_16155 PF07947 YhhN family HQ397_16175 PF00326 Prolyl oligopeptidase family HQ397_16175 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ397_16190 PF00106 short chain dehydrogenase HQ397_16195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_16195 PF03466 LysR substrate binding domain HQ397_16200 PF02525 Flavodoxin-like fold HQ397_16205 PF00999 Sodium/hydrogen exchanger family HQ397_16205 PF02254 TrkA-N domain HQ397_16250 PF01196 Ribosomal protein L17 HQ397_16255 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HQ397_16255 PF01000 RNA polymerase Rpb3/RpoA insert domain HQ397_16255 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HQ397_16260 PF00163 Ribosomal protein S4/S9 N-terminal domain HQ397_16260 PF01479 S4 domain HQ397_16265 PF00411 Ribosomal protein S11 HQ397_16270 PF00416 Ribosomal protein S13/S18 HQ397_16275 PF00444 Ribosomal protein L36 HQ397_16280 PF00344 SecY translocase HQ397_16285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HQ397_16290 PF00327 Ribosomal protein L30p/L7e HQ397_16295 PF03719 Ribosomal protein S5, C-terminal domain HQ397_16295 PF00333 Ribosomal protein S5, N-terminal domain HQ397_16300 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HQ397_16305 PF00347 Ribosomal protein L6 HQ397_16310 PF00410 Ribosomal protein S8 HQ397_16315 PF00253 Ribosomal protein S14p/S29e HQ397_16320 PF00281 Ribosomal protein L5 HQ397_16320 PF00673 ribosomal L5P family C-terminus HQ397_16325 PF00467 KOW motif HQ397_16325 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HQ397_16330 PF00238 Ribosomal protein L14p/L23e HQ397_16335 PF00366 Ribosomal protein S17 HQ397_16340 PF00831 Ribosomal L29 protein HQ397_16345 PF00252 Ribosomal protein L16p/L10e HQ397_16350 PF00189 Ribosomal protein S3, C-terminal domain HQ397_16350 PF07650 KH domain HQ397_16355 PF00237 Ribosomal protein L22p/L17e HQ397_16360 PF00203 Ribosomal protein S19 HQ397_16365 PF03947 Ribosomal Proteins L2, C-terminal domain HQ397_16365 PF00181 Ribosomal Proteins L2, RNA binding domain HQ397_16370 PF00276 Ribosomal protein L23 HQ397_16375 PF00573 Ribosomal protein L4/L1 family HQ397_16380 PF00297 Ribosomal protein L3 HQ397_16385 PF00338 Ribosomal protein S10p/S20e HQ397_16395 PF00512 His Kinase A (phospho-acceptor) domain HQ397_16395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_16395 PF00672 HAMP domain HQ397_16400 PF00486 Transcriptional regulatory protein, C terminal HQ397_16400 PF00072 Response regulator receiver domain HQ397_16405 PF03449 Transcription elongation factor, N-terminal HQ397_16405 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ397_16410 PF00575 S1 RNA binding domain HQ397_16410 PF09371 Tex-like protein N-terminal domain HQ397_16410 PF16921 Tex protein YqgF-like domain HQ397_16410 PF17674 HHH domain HQ397_16430 PF00561 alpha/beta hydrolase fold HQ397_16435 PF00156 Phosphoribosyl transferase domain HQ397_16440 PF01521 Iron-sulphur cluster biosynthesis HQ397_16440 PF01106 NifU-like domain HQ397_16445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HQ397_16445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HQ397_16450 PF02556 Preprotein translocase subunit SecB HQ397_16455 PF00581 Rhodanese-like domain HQ397_16460 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ397_16460 PF01676 Metalloenzyme superfamily HQ397_16465 PF01551 Peptidase family M23 HQ397_16475 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_16475 PF00356 Bacterial regulatory proteins, lacI family HQ397_16480 PF01081 KDPG and KHG aldolase HQ397_16485 PF00920 Dehydratase family HQ397_16490 PF01202 Shikimate kinase HQ397_16495 PF02447 GntP family permease HQ397_16500 PF13091 PLD-like domain HQ397_16505 PF17191 RecG wedge domain HQ397_16505 PF00270 DEAD/DEAH box helicase HQ397_16505 PF00271 Helicase conserved C-terminal domain HQ397_16515 PF00583 Acetyltransferase (GNAT) family HQ397_16515 PF09500 Putative thioesterase (yiiD_Cterm) HQ397_16530 PF02580 D-Tyr-tRNA(Tyr) deacylase HQ397_16535 PF03631 Virulence factor BrkB HQ397_16540 PF03144 Elongation factor Tu domain 2 HQ397_16540 PF00009 Elongation factor Tu GTP binding domain HQ397_16540 PF00679 Elongation factor G C-terminus HQ397_16545 PF00120 Glutamine synthetase, catalytic domain HQ397_16545 PF03951 Glutamine synthetase, beta-Grasp domain HQ397_16555 PF00512 His Kinase A (phospho-acceptor) domain HQ397_16555 PF00989 PAS fold HQ397_16555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_16560 PF02954 Bacterial regulatory protein, Fis family HQ397_16560 PF00072 Response regulator receiver domain HQ397_16560 PF00158 Sigma-54 interaction domain HQ397_16565 PF00962 Adenosine/AMP deaminase HQ397_16570 PF06969 HemN C-terminal domain HQ397_16570 PF04055 Radical SAM superfamily HQ397_16575 PF10675 Protein of unknown function (DUF2489) HQ397_16580 PF04220 Der GTPase activator (YihI) HQ397_16585 PF00034 Cytochrome c HQ397_16590 PF01926 50S ribosome-binding GTPase HQ397_16595 PF07369 Protein of unknown function (DUF1488) HQ397_16600 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HQ397_16600 PF08501 Shikimate dehydrogenase substrate binding domain HQ397_16600 PF01488 Shikimate / quinate 5-dehydrogenase HQ397_16605 PF01218 Coproporphyrinogen III oxidase HQ397_16610 PF01300 Telomere recombination HQ397_16615 PF00731 AIR carboxylase HQ397_16620 PF01396 Topoisomerase DNA binding C4 zinc finger HQ397_16625 PF04361 Protein of unknown function (DUF494) HQ397_16630 PF17782 DprA winged helix domain HQ397_16630 PF02481 DNA recombination-mediator protein A HQ397_16640 PF01327 Polypeptide deformylase HQ397_16645 PF00551 Formyl transferase HQ397_16645 PF02911 Formyl transferase, C-terminal domain HQ397_16650 PF01189 16S rRNA methyltransferase RsmB/F HQ397_16650 PF01029 NusB family HQ397_16655 PF02080 TrkA-C domain HQ397_16655 PF02254 TrkA-N domain HQ397_16660 PF02386 Cation transport protein HQ397_16665 PF02646 RmuC family HQ397_16680 PF02082 Transcriptional regulator HQ397_16685 PF00294 pfkB family carbohydrate kinase HQ397_16690 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ397_16690 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ397_16695 PF00117 Glutamine amidotransferase class-I HQ397_16695 PF00958 GMP synthase C terminal domain HQ397_16695 PF02540 NAD synthase HQ397_16700 PF00171 Aldehyde dehydrogenase family HQ397_16705 PF00202 Aminotransferase class-III HQ397_16710 PF01381 Helix-turn-helix HQ397_16710 PF07883 Cupin domain HQ397_16715 PF00171 Aldehyde dehydrogenase family HQ397_16725 PF00892 EamA-like transporter family HQ397_16730 PF12833 Helix-turn-helix domain HQ397_16735 PF01810 LysE type translocator HQ397_16740 PF00690 Cation transporter/ATPase, N-terminus HQ397_16740 PF00689 Cation transporting ATPase, C-terminus HQ397_16745 PF04143 Sulphur transport HQ397_16755 PF01810 LysE type translocator HQ397_16765 PF06206 CpeT/CpcT family (DUF1001) HQ397_16790 PF14001 YdfZ protein HQ397_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_16800 PF03466 LysR substrate binding domain HQ397_16820 PF13361 UvrD-like helicase C-terminal domain HQ397_16820 PF00580 UvrD/REP helicase N-terminal domain HQ397_16825 PF02608 ABC transporter substrate-binding protein PnrA-like HQ397_16830 PF00005 ABC transporter HQ397_16835 PF02653 Branched-chain amino acid transport system / permease component HQ397_16840 PF02653 Branched-chain amino acid transport system / permease component HQ397_16845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_16845 PF03466 LysR substrate binding domain HQ397_16850 PF08240 Alcohol dehydrogenase GroES-like domain HQ397_16850 PF00107 Zinc-binding dehydrogenase HQ397_16855 PF00756 Putative esterase HQ397_16865 PF12867 DinB superfamily HQ397_16865 PF03781 Sulfatase-modifying factor enzyme 1 HQ397_16870 PF13593 SBF-like CPA transporter family (DUF4137) HQ397_16875 PF13520 Amino acid permease HQ397_16880 PF01588 Putative tRNA binding domain HQ397_16885 PF13520 Amino acid permease HQ397_16890 PF04074 YhcH/YjgK/YiaL HQ397_16895 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ397_16895 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ397_16895 PF00703 Glycosyl hydrolases family 2 HQ397_16895 PF16353 Domain of unknown function(DUF4981) HQ397_16895 PF02929 Beta galactosidase small chain HQ397_16900 PF00356 Bacterial regulatory proteins, lacI family HQ397_16945 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ397_16945 PF00476 DNA polymerase family A HQ397_16945 PF01612 3'-5' exonuclease HQ397_16945 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ397_16955 PF06005 Cell division protein ZapB HQ397_16965 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_16965 PF06426 Serine acetyltransferase, N-terminal HQ397_16970 PF16916 Dimerisation domain of Zinc Transporter HQ397_16970 PF01545 Cation efflux family HQ397_16975 PF00486 Transcriptional regulatory protein, C terminal HQ397_16975 PF00072 Response regulator receiver domain HQ397_16980 PF00512 His Kinase A (phospho-acceptor) domain HQ397_16980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_16980 PF00672 HAMP domain HQ397_16980 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ397_16985 PF00588 SpoU rRNA Methylase family HQ397_16990 PF01554 MatE HQ397_16995 PF02630 SCO1/SenC HQ397_17005 PF00717 Peptidase S24-like HQ397_17005 PF01726 LexA DNA binding domain HQ397_17010 PF01553 Acyltransferase HQ397_17015 PF01040 UbiA prenyltransferase family HQ397_17020 PF04345 Chorismate lyase HQ397_17025 PF03748 Flagellar basal body-associated protein FliL HQ397_17040 PF00107 Zinc-binding dehydrogenase HQ397_17040 PF08240 Alcohol dehydrogenase GroES-like domain HQ397_17045 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_17045 PF00356 Bacterial regulatory proteins, lacI family HQ397_17050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_17060 PF03611 PTS system sugar-specific permease component HQ397_17070 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ397_17075 PF00535 Glycosyl transferase family 2 HQ397_17080 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ397_17085 PF01467 Cytidylyltransferase-like HQ397_17090 PF04393 Protein of unknown function (DUF535) HQ397_17095 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HQ397_17095 PF06827 Zinc finger found in FPG and IleRS HQ397_17095 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HQ397_17105 PF00471 Ribosomal protein L33 HQ397_17110 PF00830 Ribosomal L28 family HQ397_17115 PF04002 RadC-like JAB domain HQ397_17120 PF04127 DNA / pantothenate metabolism flavoprotein HQ397_17120 PF02441 Flavoprotein HQ397_17125 PF00692 dUTPase HQ397_17130 PF00440 Bacterial regulatory proteins, tetR family HQ397_17135 PF00924 Mechanosensitive ion channel HQ397_17135 PF05552 Conserved TM helix HQ397_17145 PF00342 Phosphoglucose isomerase HQ397_17150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HQ397_17150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HQ397_17155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_17155 PF03466 LysR substrate binding domain HQ397_17170 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ397_17170 PF13380 CoA binding domain HQ397_17170 PF00583 Acetyltransferase (GNAT) family HQ397_17200 PF01177 Asp/Glu/Hydantoin racemase HQ397_17205 PF07715 TonB-dependent Receptor Plug Domain HQ397_17205 PF00593 TonB dependent receptor HQ397_17225 PF00731 AIR carboxylase HQ397_17230 PF02222 ATP-grasp domain HQ397_17230 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HQ397_17235 PF07690 Major Facilitator Superfamily HQ397_17240 PF04397 LytTr DNA-binding domain HQ397_17240 PF00072 Response regulator receiver domain HQ397_17245 PF06580 Histidine kinase HQ397_17245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_17245 PF07694 5TMR of 5TMR-LYT HQ397_17255 PF00072 Response regulator receiver domain HQ397_17255 PF00989 PAS fold HQ397_17255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_17255 PF00512 His Kinase A (phospho-acceptor) domain HQ397_17255 PF01627 Hpt domain HQ397_17255 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_17260 PF00196 Bacterial regulatory proteins, luxR family HQ397_17260 PF00072 Response regulator receiver domain HQ397_17265 PF16449 Fimbrillin MatB HQ397_17270 PF18649 EcpB C-terminal domain HQ397_17275 PF15976 CS1-pili formation C-terminal HQ397_17275 PF16967 E-set like domain HQ397_17290 PF01810 LysE type translocator HQ397_17295 PF07690 Major Facilitator Superfamily HQ397_17305 PF00210 Ferritin-like domain HQ397_17310 PF00990 Diguanylate cyclase, GGDEF domain HQ397_17315 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ397_17315 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ397_17315 PF07055 Enoyl reductase FAD binding domain HQ397_17320 PF00582 Universal stress protein family HQ397_17325 PF00579 tRNA synthetases class I (W and Y) HQ397_17330 PF03466 LysR substrate binding domain HQ397_17330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_17350 PF00892 EamA-like transporter family HQ397_17365 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ397_17370 PF00625 Guanylate kinase HQ397_17375 PF01192 RNA polymerase Rpb6 HQ397_17380 PF02824 TGS domain HQ397_17380 PF13291 ACT domain HQ397_17380 PF04607 Region found in RelA / SpoT proteins HQ397_17385 PF12105 SpoU, rRNA methylase, C-terminal HQ397_17385 PF00588 SpoU rRNA Methylase family HQ397_17390 PF12146 Serine aminopeptidase, S33 HQ397_17425 PF00440 Bacterial regulatory proteins, tetR family HQ397_17430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_17440 PF00512 His Kinase A (phospho-acceptor) domain HQ397_17440 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_17440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_17445 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_17445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_17450 PF03814 Potassium-transporting ATPase A subunit HQ397_17460 PF02669 K+-transporting ATPase, c chain HQ397_17465 PF02702 Osmosensitive K+ channel His kinase sensor domain HQ397_17465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_17465 PF13492 GAF domain HQ397_17465 PF00512 His Kinase A (phospho-acceptor) domain HQ397_17465 PF13493 Domain of unknown function (DUF4118) HQ397_17470 PF00072 Response regulator receiver domain HQ397_17470 PF00486 Transcriptional regulatory protein, C terminal HQ397_17475 PF07690 Major Facilitator Superfamily HQ397_17490 PF00155 Aminotransferase class I and II HQ397_17495 PF00011 Hsp20/alpha crystallin family HQ397_17500 PF00011 Hsp20/alpha crystallin family HQ397_17505 PF08279 HTH domain HQ397_17505 PF13280 WYL domain HQ397_17515 PF00204 DNA gyrase B HQ397_17515 PF00986 DNA gyrase B subunit, carboxyl terminus HQ397_17515 PF18053 DNA gyrase B subunit insert domain HQ397_17515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_17515 PF01751 Toprim domain HQ397_17520 PF02463 RecF/RecN/SMC N terminal domain HQ397_17525 PF00712 DNA polymerase III beta subunit, N-terminal domain HQ397_17525 PF02767 DNA polymerase III beta subunit, central domain HQ397_17525 PF02768 DNA polymerase III beta subunit, C-terminal domain HQ397_17530 PF08299 Bacterial dnaA protein helix-turn-helix HQ397_17530 PF00308 Bacterial dnaA protein HQ397_17530 PF11638 DnaA N-terminal domain HQ397_17535 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_17540 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_17545 PF00005 ABC transporter HQ397_17550 PF00468 Ribosomal protein L34 HQ397_17555 PF00825 Ribonuclease P HQ397_17560 PF01809 Putative membrane protein insertion efficiency factor HQ397_17565 PF02096 60Kd inner membrane protein HQ397_17565 PF14849 YidC periplasmic domain HQ397_17570 PF01926 50S ribosome-binding GTPase HQ397_17570 PF12631 MnmE helical domain HQ397_17570 PF10396 GTP-binding protein TrmE N-terminus HQ397_17585 PF00005 ABC transporter HQ397_17595 PF07715 TonB-dependent Receptor Plug Domain HQ397_17595 PF00593 TonB dependent receptor HQ397_17600 PF00258 Flavodoxin HQ397_17605 PF01134 Glucose inhibited division protein A HQ397_17605 PF13932 GidA associated domain HQ397_17610 PF02527 rRNA small subunit methyltransferase G HQ397_17615 PF13614 AAA domain HQ397_17620 PF02195 ParB-like nuclease domain HQ397_17620 PF17762 HTH domain found in ParB protein HQ397_17630 PF00119 ATP synthase A chain HQ397_17635 PF00137 ATP synthase subunit C HQ397_17640 PF00430 ATP synthase B/B' CF(0) HQ397_17645 PF00213 ATP synthase delta (OSCP) subunit HQ397_17650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_17650 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ397_17650 PF00306 ATP synthase alpha/beta chain, C terminal domain HQ397_17655 PF00231 ATP synthase HQ397_17660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_17660 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ397_17665 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HQ397_17665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HQ397_17670 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_17670 PF12804 MobA-like NTP transferase domain HQ397_17670 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_17675 PF06123 Inner membrane protein CreD HQ397_17680 PF00905 Penicillin binding protein transpeptidase domain HQ397_17685 PF00672 HAMP domain HQ397_17685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_17685 PF00512 His Kinase A (phospho-acceptor) domain HQ397_17690 PF00072 Response regulator receiver domain HQ397_17690 PF00486 Transcriptional regulatory protein, C terminal HQ397_17695 PF00455 DeoR C terminal sensor domain HQ397_17695 PF08220 DeoR-like helix-turn-helix domain HQ397_17700 PF01380 SIS domain HQ397_17705 PF00196 Bacterial regulatory proteins, luxR family HQ397_17705 PF03472 Autoinducer binding domain HQ397_17715 PF01618 MotA/TolQ/ExbB proton channel family HQ397_17720 PF01618 MotA/TolQ/ExbB proton channel family HQ397_17725 PF02472 Biopolymer transport protein ExbD/TolR HQ397_17730 PF03544 Gram-negative bacterial TonB protein C-terminal HQ397_17770 PF07969 Amidohydrolase family HQ397_17780 PF01209 ubiE/COQ5 methyltransferase family HQ397_17785 PF02036 SCP-2 sterol transfer family HQ397_17790 PF03109 ABC1 family HQ397_17795 PF02416 mttA/Hcf106 family HQ397_17800 PF02416 mttA/Hcf106 family HQ397_17805 PF00902 Sec-independent protein translocase protein (TatC) HQ397_17810 PF01026 TatD related DNase HQ397_17815 PF00490 Delta-aminolevulinic acid dehydratase HQ397_17825 PF00563 EAL domain HQ397_17825 PF00990 Diguanylate cyclase, GGDEF domain HQ397_17825 PF03707 Bacterial signalling protein N terminal repeat HQ397_17830 PF04445 Putative SAM-dependent methyltransferase HQ397_17845 PF02541 Ppx/GppA phosphatase family HQ397_17850 PF00271 Helicase conserved C-terminal domain HQ397_17850 PF00270 DEAD/DEAH box helicase HQ397_17855 PF00085 Thioredoxin HQ397_17860 PF07497 Rho termination factor, RNA-binding domain HQ397_17860 PF07498 Rho termination factor, N-terminal domain HQ397_17860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_17870 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HQ397_17875 PF00175 Oxidoreductase NAD-binding domain HQ397_17880 PF04380 Membrane fusogenic activity HQ397_17885 PF12262 Bacterial virulence factor lipase N-terminal HQ397_17890 PF01694 Rhomboid family HQ397_17890 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HQ397_17895 PF00581 Rhodanese-like domain HQ397_17915 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ397_17915 PF00005 ABC transporter HQ397_17920 PF02653 Branched-chain amino acid transport system / permease component HQ397_17920 PF11862 Domain of unknown function (DUF3382) HQ397_17925 PF02653 Branched-chain amino acid transport system / permease component HQ397_17930 PF13458 Periplasmic binding protein HQ397_17935 PF00356 Bacterial regulatory proteins, lacI family HQ397_17940 PF11975 Family 4 glycosyl hydrolase C-terminal domain HQ397_17940 PF02056 Family 4 glycosyl hydrolase HQ397_17945 PF02378 Phosphotransferase system, EIIC HQ397_17945 PF00367 phosphotransferase system, EIIB HQ397_17950 PF07702 UTRA domain HQ397_17950 PF00392 Bacterial regulatory proteins, gntR family HQ397_17955 PF00158 Sigma-54 interaction domain HQ397_17955 PF01590 GAF domain HQ397_17960 PF00258 Flavodoxin HQ397_17960 PF00753 Metallo-beta-lactamase superfamily HQ397_17960 PF00301 Rubredoxin HQ397_17965 PF18113 Rubredoxin binding C-terminal domain HQ397_17965 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_17975 PF12801 4Fe-4S binding domain HQ397_17980 PF03222 Tryptophan/tyrosine permease family HQ397_17990 PF05932 Tir chaperone protein (CesT) family HQ397_17995 PF03545 Yersinia virulence determinant (YopE) HQ397_17995 PF03496 ADP-ribosyltransferase exoenzyme HQ397_18015 PF14306 PUA-like domain HQ397_18015 PF01747 ATP-sulfurylase HQ397_18020 PF11008 Protein of unknown function (DUF2846) HQ397_18025 PF02092 Glycyl-tRNA synthetase beta subunit HQ397_18025 PF05746 DALR anticodon binding domain HQ397_18030 PF02091 Glycyl-tRNA synthetase alpha subunit HQ397_18035 PF03352 Methyladenine glycosylase HQ397_18040 PF00857 Isochorismatase family HQ397_18045 PF13488 Glycine zipper HQ397_18045 PF00691 OmpA family HQ397_18060 PF01042 Endoribonuclease L-PSP HQ397_18065 PF01206 Sulfurtransferase TusA HQ397_18075 PF01547 Bacterial extracellular solute-binding protein HQ397_18080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_18080 PF00512 His Kinase A (phospho-acceptor) domain HQ397_18080 PF00672 HAMP domain HQ397_18085 PF00486 Transcriptional regulatory protein, C terminal HQ397_18085 PF00072 Response regulator receiver domain HQ397_18090 PF00108 Thiolase, N-terminal domain HQ397_18090 PF02803 Thiolase, C-terminal domain HQ397_18095 PF00378 Enoyl-CoA hydratase/isomerase HQ397_18095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ397_18095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ397_18100 PF13193 AMP-binding enzyme C-terminal domain HQ397_18100 PF00501 AMP-binding enzyme HQ397_18105 PF00557 Metallopeptidase family M24 HQ397_18110 PF09186 Domain of unknown function (DUF1949) HQ397_18110 PF01205 Uncharacterized protein family UPF0029 HQ397_18115 PF02386 Cation transport protein HQ397_18120 PF12724 Flavodoxin domain HQ397_18155 PF00899 ThiF family HQ397_18160 PF02657 Fe-S metabolism associated domain HQ397_18165 PF00266 Aminotransferase class-V HQ397_18170 PF13361 UvrD-like helicase C-terminal domain HQ397_18170 PF00580 UvrD/REP helicase N-terminal domain HQ397_18175 PF00990 Diguanylate cyclase, GGDEF domain HQ397_18175 PF00563 EAL domain HQ397_18175 PF03707 Bacterial signalling protein N terminal repeat HQ397_18180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ397_18190 PF00155 Aminotransferase class I and II HQ397_18195 PF08360 QacR-like protein, C-terminal region HQ397_18195 PF00440 Bacterial regulatory proteins, tetR family HQ397_18200 PF01370 NAD dependent epimerase/dehydratase family HQ397_18215 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HQ397_18235 PF08340 Domain of unknown function (DUF1732) HQ397_18235 PF03755 YicC-like family, N-terminal region HQ397_18240 PF03725 3' exoribonuclease family, domain 2 HQ397_18240 PF01138 3' exoribonuclease family, domain 1 HQ397_18245 PF00156 Phosphoribosyl transferase domain HQ397_18250 PF00403 Heavy-metal-associated domain HQ397_18255 PF09278 MerR, DNA binding HQ397_18255 PF00376 MerR family regulatory protein HQ397_18260 PF01590 GAF domain HQ397_18260 PF00563 EAL domain HQ397_18260 PF00360 Phytochrome region HQ397_18260 PF00990 Diguanylate cyclase, GGDEF domain HQ397_18265 PF06288 Protein of unknown function (DUF1040) HQ397_18270 PF12801 4Fe-4S binding domain HQ397_18270 PF13746 4Fe-4S dicluster domain HQ397_18270 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HQ397_18275 PF01636 Phosphotransferase enzyme family HQ397_18280 PF01323 DSBA-like thioredoxin domain HQ397_18285 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HQ397_18285 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HQ397_18290 PF00857 Isochorismatase family HQ397_18300 PF04463 Protein of unknown function (DUF523) HQ397_18305 PF01553 Acyltransferase HQ397_18315 PF13335 Magnesium chelatase, subunit ChlI C-terminal HQ397_18315 PF01078 Magnesium chelatase, subunit ChlI HQ397_18320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ397_18320 PF00205 Thiamine pyrophosphate enzyme, central domain HQ397_18320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_18330 PF01063 Amino-transferase class IV HQ397_18335 PF00920 Dehydratase family HQ397_18340 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_18340 PF00585 C-terminal regulatory domain of Threonine dehydratase HQ397_18345 PF00691 OmpA family HQ397_18345 PF01389 OmpA-like transmembrane domain HQ397_18355 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HQ397_18355 PF00270 DEAD/DEAH box helicase HQ397_18355 PF00271 Helicase conserved C-terminal domain HQ397_18355 PF18074 Primosomal protein N C-terminal domain HQ397_18355 PF17764 3′ DNA-binding domain (3′BD) HQ397_18360 PF01197 Ribosomal protein L31 HQ397_18365 PF13460 NAD(P)H-binding HQ397_18365 PF11066 Protein of unknown function (DUF2867) HQ397_18370 PF03949 Malic enzyme, NAD binding domain HQ397_18370 PF00390 Malic enzyme, N-terminal domain HQ397_18380 PF00512 His Kinase A (phospho-acceptor) domain HQ397_18380 PF00672 HAMP domain HQ397_18380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_18385 PF00072 Response regulator receiver domain HQ397_18385 PF00486 Transcriptional regulatory protein, C terminal HQ397_18390 PF05958 tRNA (Uracil-5-)-methyltransferase HQ397_18425 PF16221 winged helix-turn-helix HQ397_18425 PF16254 Domain of unknown function (DUF4910) HQ397_18425 PF09940 Domain of unknown function (DUF2172) HQ397_18445 PF03102 NeuB family HQ397_18445 PF08666 SAF domain HQ397_18455 PF02348 Cytidylyltransferase HQ397_18475 PF00501 AMP-binding enzyme HQ397_18475 PF13193 AMP-binding enzyme C-terminal domain HQ397_18490 PF00535 Glycosyl transferase family 2 HQ397_18495 PF03275 UDP-galactopyranose mutase HQ397_18500 PF13439 Glycosyltransferase Family 4 HQ397_18500 PF00534 Glycosyl transferases group 1 HQ397_18540 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ397_18540 PF00391 PEP-utilising enzyme, mobile domain HQ397_18545 PF02540 NAD synthase HQ397_18545 PF00117 Glutamine amidotransferase class-I HQ397_18545 PF00958 GMP synthase C terminal domain HQ397_18550 PF12804 MobA-like NTP transferase domain HQ397_18555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ397_18560 PF02719 Polysaccharide biosynthesis protein HQ397_18565 PF00128 Alpha amylase, catalytic domain HQ397_18565 PF02903 Alpha amylase, N-terminal ig-like domain HQ397_18580 PF00012 Hsp70 protein HQ397_18585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ397_18585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_18590 PF05981 CreA protein HQ397_18605 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ397_18610 PF00120 Glutamine synthetase, catalytic domain HQ397_18615 PF00202 Aminotransferase class-III HQ397_18620 PF13416 Bacterial extracellular solute-binding protein HQ397_18630 PF00005 ABC transporter HQ397_18630 PF08402 TOBE domain HQ397_18635 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_18640 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_18645 PF03473 MOSC domain HQ397_18645 PF03475 3-alpha domain HQ397_18660 PF03061 Thioesterase superfamily HQ397_18665 PF00271 Helicase conserved C-terminal domain HQ397_18665 PF00570 HRDC domain HQ397_18665 PF16124 RecQ zinc-binding HQ397_18665 PF09382 RQC domain HQ397_18665 PF00270 DEAD/DEAH box helicase HQ397_18670 PF00034 Cytochrome c HQ397_18675 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HQ397_18685 PF02592 Putative vitamin uptake transporter HQ397_18690 PF03737 Aldolase/RraA HQ397_18695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_18695 PF00672 HAMP domain HQ397_18705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ397_18705 PF10414 Sirohaem synthase dimerisation region HQ397_18705 PF14824 Sirohaem biosynthesis protein central HQ397_18710 PF01226 Formate/nitrite transporter HQ397_18715 PF13806 Rieske-like [2Fe-2S] domain HQ397_18720 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_18720 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ397_18720 PF04324 BFD-like [2Fe-2S] binding domain HQ397_18720 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ397_18720 PF18267 Rubredoxin NAD+ reductase C-terminal domain HQ397_18725 PF03466 LysR substrate binding domain HQ397_18725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_18730 PF07690 Major Facilitator Superfamily HQ397_18740 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_18740 PF07724 AAA domain (Cdc48 subfamily) HQ397_18740 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_18745 PF00227 Proteasome subunit HQ397_18760 PF05746 DALR anticodon binding domain HQ397_18760 PF00750 tRNA synthetases class I (R) HQ397_18760 PF03485 Arginyl tRNA synthetase N terminal domain HQ397_18770 PF04545 Sigma-70, region 4 HQ397_18770 PF04542 Sigma-70 region 2 HQ397_18775 PF12973 ChrR Cupin-like domain HQ397_18780 PF02673 Bacitracin resistance protein BacA HQ397_18785 PF00248 Aldo/keto reductase family HQ397_18790 PF01263 Aldose 1-epimerase HQ397_18795 PF08544 GHMP kinases C terminal HQ397_18795 PF10509 Galactokinase galactose-binding signature HQ397_18795 PF00288 GHMP kinases N terminal domain HQ397_18800 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ397_18800 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ397_18805 PF16363 GDP-mannose 4,6 dehydratase HQ397_18810 PF00356 Bacterial regulatory proteins, lacI family HQ397_18815 PF02929 Beta galactosidase small chain HQ397_18815 PF16353 Domain of unknown function(DUF4981) HQ397_18815 PF00703 Glycosyl hydrolases family 2 HQ397_18815 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ397_18815 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ397_18820 PF13407 Periplasmic binding protein domain HQ397_18825 PF00005 ABC transporter HQ397_18830 PF02653 Branched-chain amino acid transport system / permease component HQ397_18835 PF02743 Cache domain HQ397_18835 PF00672 HAMP domain HQ397_18835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_18860 PF00696 Amino acid kinase family HQ397_18865 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ397_18865 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ397_18870 PF03606 C4-dicarboxylate anaerobic carrier HQ397_18880 PF01316 Arginine repressor, DNA binding domain HQ397_18880 PF02863 Arginine repressor, C-terminal domain HQ397_18885 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HQ397_18885 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HQ397_18890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ397_18890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ397_18910 PF02666 Phosphatidylserine decarboxylase HQ397_18915 PF00561 alpha/beta hydrolase fold HQ397_18925 PF03466 LysR substrate binding domain HQ397_18925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_18930 PF00672 HAMP domain HQ397_18930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_18930 PF02743 Cache domain HQ397_18935 PF08212 Lipocalin-like domain HQ397_18940 PF06719 AraC-type transcriptional regulator N-terminus HQ397_18940 PF12833 Helix-turn-helix domain HQ397_18945 PF00465 Iron-containing alcohol dehydrogenase HQ397_18950 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ397_18950 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ397_18950 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HQ397_18955 PF02233 NAD(P) transhydrogenase beta subunit HQ397_18965 PF03313 Serine dehydratase alpha chain HQ397_18970 PF00375 Sodium:dicarboxylate symporter family HQ397_18975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_18975 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_18980 PF13525 Outer membrane lipoprotein HQ397_18985 PF01479 S4 domain HQ397_18985 PF00849 RNA pseudouridylate synthase HQ397_18990 PF02578 Multi-copper polyphenol oxidoreductase laccase HQ397_18995 PF17871 AAA lid domain HQ397_18995 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_18995 PF07724 AAA domain (Cdc48 subfamily) HQ397_18995 PF02861 Clp amino terminal domain, pathogenicity island component HQ397_18995 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_19005 PF03590 Aspartate-ammonia ligase HQ397_19010 PF01037 Lrp/AsnC ligand binding domain HQ397_19020 PF10063 Uncharacterized integral membrane protein (DUF2301) HQ397_19025 PF00478 IMP dehydrogenase / GMP reductase domain HQ397_19025 PF00571 CBS domain HQ397_19045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_19045 PF00512 His Kinase A (phospho-acceptor) domain HQ397_19055 PF00072 Response regulator receiver domain HQ397_19055 PF00158 Sigma-54 interaction domain HQ397_19060 PF06496 Protein of unknown function (DUF1097) HQ397_19070 PF01794 Ferric reductase like transmembrane component HQ397_19085 PF00072 Response regulator receiver domain HQ397_19085 PF00486 Transcriptional regulatory protein, C terminal HQ397_19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_19100 PF00384 Molybdopterin oxidoreductase HQ397_19100 PF18364 Molybdopterin oxidoreductase N-terminal domain HQ397_19100 PF01568 Molydopterin dinucleotide binding domain HQ397_19105 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ397_19110 PF01131 DNA topoisomerase HQ397_19110 PF01751 Toprim domain HQ397_19125 PF12852 Cupin HQ397_19125 PF12833 Helix-turn-helix domain HQ397_19130 PF02386 Cation transport protein HQ397_19135 PF02080 TrkA-C domain HQ397_19135 PF02254 TrkA-N domain HQ397_19140 PF01565 FAD binding domain HQ397_19140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HQ397_19145 PF02237 Biotin protein ligase C terminal domain HQ397_19145 PF03099 Biotin/lipoate A/B protein ligase family HQ397_19145 PF08279 HTH domain HQ397_19150 PF00485 Phosphoribulokinase / Uridine kinase family HQ397_19165 PF03144 Elongation factor Tu domain 2 HQ397_19165 PF03143 Elongation factor Tu C-terminal domain HQ397_19165 PF00009 Elongation factor Tu GTP binding domain HQ397_19175 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HQ397_19180 PF02357 Transcription termination factor nusG HQ397_19180 PF00467 KOW motif HQ397_19185 PF00298 Ribosomal protein L11, RNA binding domain HQ397_19185 PF03946 Ribosomal protein L11, N-terminal domain HQ397_19190 PF00687 Ribosomal protein L1p/L10e family HQ397_19195 PF00466 Ribosomal protein L10 HQ397_19200 PF00542 Ribosomal protein L7/L12 C-terminal domain HQ397_19200 PF16320 Ribosomal protein L7/L12 dimerisation domain HQ397_19205 PF04563 RNA polymerase beta subunit HQ397_19205 PF04561 RNA polymerase Rpb2, domain 2 HQ397_19205 PF10385 RNA polymerase beta subunit external 1 domain HQ397_19205 PF00562 RNA polymerase Rpb2, domain 6 HQ397_19205 PF04560 RNA polymerase Rpb2, domain 7 HQ397_19205 PF04565 RNA polymerase Rpb2, domain 3 HQ397_19210 PF04997 RNA polymerase Rpb1, domain 1 HQ397_19210 PF00623 RNA polymerase Rpb1, domain 2 HQ397_19210 PF04983 RNA polymerase Rpb1, domain 3 HQ397_19210 PF05000 RNA polymerase Rpb1, domain 4 HQ397_19210 PF04998 RNA polymerase Rpb1, domain 5 HQ397_19215 PF13309 HTH domain HQ397_19215 PF08348 YheO-like PAS domain HQ397_19220 PF01042 Endoribonuclease L-PSP HQ397_19225 PF02635 DsrE/DsrF-like family HQ397_19230 PF02635 DsrE/DsrF-like family HQ397_19235 PF04077 DsrH like protein HQ397_19240 PF00164 Ribosomal protein S12/S23 HQ397_19245 PF00177 Ribosomal protein S7p/S5e HQ397_19250 PF00679 Elongation factor G C-terminus HQ397_19250 PF14492 Elongation Factor G, domain II HQ397_19250 PF03144 Elongation factor Tu domain 2 HQ397_19250 PF03764 Elongation factor G, domain IV HQ397_19250 PF00009 Elongation factor Tu GTP binding domain HQ397_19255 PF03143 Elongation factor Tu C-terminal domain HQ397_19255 PF03144 Elongation factor Tu domain 2 HQ397_19255 PF00009 Elongation factor Tu GTP binding domain HQ397_19295 PF00860 Permease family HQ397_19300 PF02733 Dak1 domain HQ397_19305 PF02734 DAK2 domain HQ397_19310 PF00391 PEP-utilising enzyme, mobile domain HQ397_19310 PF00381 PTS HPr component phosphorylation site HQ397_19310 PF03610 PTS system fructose IIA component HQ397_19310 PF05524 PEP-utilising enzyme, N-terminal HQ397_19315 PF00465 Iron-containing alcohol dehydrogenase HQ397_19320 PF02954 Bacterial regulatory protein, Fis family HQ397_19320 PF00989 PAS fold HQ397_19320 PF00158 Sigma-54 interaction domain HQ397_19325 PF03466 LysR substrate binding domain HQ397_19325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_19330 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ397_19335 PF00106 short chain dehydrogenase HQ397_19340 PF01594 AI-2E family transporter HQ397_19345 PF00293 NUDIX domain HQ397_19370 PF06628 Catalase-related immune-responsive HQ397_19370 PF00199 Catalase HQ397_19375 PF00583 Acetyltransferase (GNAT) family HQ397_19405 PF12857 TOBE-like domain HQ397_19405 PF00005 ABC transporter HQ397_19415 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_19430 PF00392 Bacterial regulatory proteins, gntR family HQ397_19430 PF07702 UTRA domain HQ397_19440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_19440 PF03466 LysR substrate binding domain HQ397_19450 PF02678 Pirin HQ397_19450 PF17954 Quercetinase C-terminal cupin domain HQ397_19455 PF07681 DoxX HQ397_19460 PF17946 RecC C-terminal domain HQ397_19465 PF13361 UvrD-like helicase C-terminal domain HQ397_19465 PF00580 UvrD/REP helicase N-terminal domain HQ397_19465 PF12705 PD-(D/E)XK nuclease superfamily HQ397_19470 PF13538 UvrD-like helicase C-terminal domain HQ397_19500 PF00990 Diguanylate cyclase, GGDEF domain HQ397_19510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_19510 PF00672 HAMP domain HQ397_19530 PF00072 Response regulator receiver domain HQ397_19530 PF00486 Transcriptional regulatory protein, C terminal HQ397_19535 PF00672 HAMP domain HQ397_19535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_19535 PF00512 His Kinase A (phospho-acceptor) domain HQ397_19540 PF00563 EAL domain HQ397_19540 PF01590 GAF domain HQ397_19540 PF00990 Diguanylate cyclase, GGDEF domain HQ397_19540 PF00360 Phytochrome region HQ397_19545 PF00593 TonB dependent receptor HQ397_19545 PF07715 TonB-dependent Receptor Plug Domain HQ397_19550 PF00313 'Cold-shock' DNA-binding domain HQ397_19560 PF01545 Cation efflux family HQ397_19560 PF16916 Dimerisation domain of Zinc Transporter HQ397_19570 PF00436 Single-strand binding protein family HQ397_19575 PF00196 Bacterial regulatory proteins, luxR family HQ397_19580 PF17760 UvrA interaction domain HQ397_19580 PF17755 UvrA DNA-binding domain HQ397_19580 PF00005 ABC transporter HQ397_19585 PF00990 Diguanylate cyclase, GGDEF domain HQ397_19590 PF03922 OmpW family HQ397_19595 PF12729 Four helix bundle sensory module for signal transduction HQ397_19595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_19595 PF00672 HAMP domain HQ397_19610 PF02219 Methylenetetrahydrofolate reductase HQ397_19620 PF03594 Benzoate membrane transport protein HQ397_19625 PF07883 Cupin domain HQ397_19625 PF01381 Helix-turn-helix HQ397_19655 PF04363 Protein of unknown function (DUF496) HQ397_19665 PF04751 Protein of unknown function (DUF615) HQ397_19670 PF01523 Putative modulator of DNA gyrase HQ397_19675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ397_19680 PF01722 BolA-like protein HQ397_19690 PF05494 MlaC protein HQ397_19695 PF02470 MlaD protein HQ397_19700 PF02405 Permease MlaE HQ397_19705 PF00005 ABC transporter HQ397_19710 PF00571 CBS domain HQ397_19710 PF01380 SIS domain HQ397_19720 PF06835 Lipopolysaccharide-assembly, LptC-related HQ397_19725 PF03968 OstA-like protein HQ397_19730 PF00005 ABC transporter HQ397_19730 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ397_19735 PF04552 Sigma-54, DNA binding domain HQ397_19735 PF00309 Sigma-54 factor, Activator interacting domain (AID) HQ397_19735 PF04963 Sigma-54 factor, core binding domain HQ397_19740 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ397_19745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_19750 PF03668 P-loop ATPase protein family HQ397_19755 PF00381 PTS HPr component phosphorylation site HQ397_19765 PF07071 KDGP aldolase HQ397_19770 PF03841 L-seryl-tRNA selenium transferase HQ397_19775 PF01979 Amidohydrolase family HQ397_19805 PF13180 PDZ domain HQ397_19810 PF13180 PDZ domain HQ397_19810 PF00595 PDZ domain HQ397_19820 PF03969 AFG1-like ATPase HQ397_19825 PF00572 Ribosomal protein L13 HQ397_19830 PF00380 Ribosomal protein S9/S16 HQ397_19835 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HQ397_19835 PF00355 Rieske [2Fe-2S] domain HQ397_19845 PF02167 Cytochrome C1 family HQ397_19850 PF02798 Glutathione S-transferase, N-terminal domain HQ397_19850 PF00043 Glutathione S-transferase, C-terminal domain HQ397_19855 PF04386 Stringent starvation protein B HQ397_19860 PF04972 BON domain HQ397_19865 PF13580 SIS domain HQ397_19870 PF02021 Uncharacterised protein family UPF0102 HQ397_19875 PF04348 LppC putative lipoprotein HQ397_19880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ397_19895 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ397_19900 PF00813 FliP family HQ397_19905 PF01313 Bacterial export proteins, family 3 HQ397_19910 PF01311 Bacterial export proteins, family 1 HQ397_19925 PF00158 Sigma-54 interaction domain HQ397_19925 PF00072 Response regulator receiver domain HQ397_19925 PF02954 Bacterial regulatory protein, Fis family HQ397_19930 PF02049 Flagellar hook-basal body complex protein FliE HQ397_19935 PF08345 Flagellar M-ring protein C-terminal HQ397_19935 PF01514 Secretory protein of YscJ/FliF family HQ397_19940 PF01706 FliG C-terminal domain HQ397_19940 PF14842 FliG N-terminal domain HQ397_19940 PF14841 FliG middle domain HQ397_19950 PF18269 T3SS EscN ATPase C-terminal domain HQ397_19950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_19975 PF00460 Flagella basal body rod protein HQ397_19980 PF00460 Flagella basal body rod protein HQ397_19980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_19985 PF03963 Flagellar hook capping protein - N-terminal region HQ397_19985 PF13860 FlgD Ig-like domain HQ397_19985 PF13861 FlgD Tudor-like domain HQ397_19990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_19990 PF00460 Flagella basal body rod protein HQ397_19990 PF07559 Flagellar basal body protein FlaE HQ397_19995 PF00460 Flagella basal body rod protein HQ397_19995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_20000 PF00460 Flagella basal body rod protein HQ397_20000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_20005 PF02107 Flagellar L-ring protein HQ397_20010 PF02119 Flagellar P-ring protein HQ397_20020 PF00460 Flagella basal body rod protein HQ397_20020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_20025 PF00669 Bacterial flagellin N-terminal helical region HQ397_20045 PF00700 Bacterial flagellin C-terminal helical region HQ397_20045 PF00669 Bacterial flagellin N-terminal helical region HQ397_20050 PF07196 Flagellin hook IN motif HQ397_20050 PF07195 Flagellar hook-associated protein 2 C-terminus HQ397_20050 PF02465 Flagellar hook-associated protein 2 N-terminus HQ397_20055 PF02561 Flagellar protein FliS HQ397_20075 PF04545 Sigma-70, region 4 HQ397_20075 PF04542 Sigma-70 region 2 HQ397_20080 PF01618 MotA/TolQ/ExbB proton channel family HQ397_20085 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ397_20085 PF00691 OmpA family HQ397_20095 PF01476 LysM domain HQ397_20095 PF01464 Transglycosylase SLT domain HQ397_20105 PF02381 MraZ protein, putative antitoxin-like HQ397_20110 PF01795 MraW methylase family HQ397_20115 PF04999 Cell division protein FtsL HQ397_20120 PF00905 Penicillin binding protein transpeptidase domain HQ397_20120 PF03717 Penicillin-binding Protein dimerisation domain HQ397_20130 PF01225 Mur ligase family, catalytic domain HQ397_20130 PF02875 Mur ligase family, glutamate ligase domain HQ397_20130 PF08245 Mur ligase middle domain HQ397_20135 PF00953 Glycosyl transferase family 4 HQ397_20135 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HQ397_20140 PF02875 Mur ligase family, glutamate ligase domain HQ397_20140 PF08245 Mur ligase middle domain HQ397_20145 PF01098 Cell cycle protein HQ397_20150 PF04101 Glycosyltransferase family 28 C-terminal domain HQ397_20150 PF03033 Glycosyltransferase family 28 N-terminal domain HQ397_20155 PF01225 Mur ligase family, catalytic domain HQ397_20155 PF02875 Mur ligase family, glutamate ligase domain HQ397_20155 PF08245 Mur ligase middle domain HQ397_20160 PF08478 POTRA domain, FtsQ-type HQ397_20160 PF03799 Cell division protein FtsQ HQ397_20165 PF02491 SHS2 domain inserted in FTSA HQ397_20170 PF00091 Tubulin/FtsZ family, GTPase domain HQ397_20170 PF12327 FtsZ family, C-terminal domain HQ397_20175 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HQ397_20185 PF02810 SEC-C motif HQ397_20185 PF07517 SecA DEAD-like domain HQ397_20185 PF01043 SecA preprotein cross-linking domain HQ397_20185 PF07516 SecA Wing and Scaffold domain HQ397_20195 PF00293 NUDIX domain HQ397_20200 PF03884 DNA gyrase inhibitor YacG HQ397_20205 PF07072 Cell division protein HQ397_20210 PF01121 Dephospho-CoA kinase HQ397_20215 PF01478 Type IV leader peptidase family HQ397_20215 PF06750 Bacterial Peptidase A24 N-terminal domain HQ397_20220 PF00482 Type II secretion system (T2SS), protein F HQ397_20225 PF00437 Type II/IV secretion system protein HQ397_20225 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ397_20230 PF07963 Prokaryotic N-terminal methylation motif HQ397_20235 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HQ397_20235 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HQ397_20245 PF01510 N-acetylmuramoyl-L-alanine amidase HQ397_20250 PF07729 FCD domain HQ397_20250 PF00392 Bacterial regulatory proteins, gntR family HQ397_20255 PF17831 Pyruvate dehydrogenase E1 component middle domain HQ397_20255 PF00456 Transketolase, thiamine diphosphate binding domain HQ397_20260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ397_20260 PF00364 Biotin-requiring enzyme HQ397_20260 PF02817 e3 binding domain HQ397_20265 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_20265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_20275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_20275 PF00672 HAMP domain HQ397_20275 PF12729 Four helix bundle sensory module for signal transduction HQ397_20280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_20280 PF00672 HAMP domain HQ397_20280 PF12729 Four helix bundle sensory module for signal transduction HQ397_20290 PF00330 Aconitase family (aconitate hydratase) HQ397_20290 PF06434 Aconitate hydratase 2 N-terminus HQ397_20290 PF11791 Aconitate B N-terminal domain HQ397_20295 PF00563 EAL domain HQ397_20295 PF12792 CSS motif domain associated with EAL HQ397_20300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_20300 PF03466 LysR substrate binding domain HQ397_20305 PF01810 LysE type translocator HQ397_20310 PF04030 D-arabinono-1,4-lactone oxidase HQ397_20310 PF01565 FAD binding domain HQ397_20315 PF07683 Cobalamin synthesis protein cobW C-terminal domain HQ397_20315 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ397_20320 PF07690 Major Facilitator Superfamily HQ397_20330 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ397_20335 PF02152 Dihydroneopterin aldolase HQ397_20340 PF02660 Glycerol-3-phosphate acyltransferase HQ397_20380 PF07670 Nucleoside recognition HQ397_20385 PF01584 CheW-like domain HQ397_20385 PF00072 Response regulator receiver domain HQ397_20390 PF00106 short chain dehydrogenase HQ397_20395 PF13718 GNAT acetyltransferase 2 HQ397_20395 PF05127 Helicase HQ397_20395 PF17176 tRNA-binding domain HQ397_20395 PF08351 Domain of unknown function (DUF1726) HQ397_20410 PF00210 Ferritin-like domain HQ397_20420 PF02142 MGS-like domain HQ397_20435 PF00710 Asparaginase, N-terminal HQ397_20435 PF17763 Glutaminase/Asparaginase C-terminal domain HQ397_20460 PF00128 Alpha amylase, catalytic domain HQ397_20460 PF11941 Domain of unknown function (DUF3459) HQ397_20465 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_20465 PF12464 Maltose acetyltransferase HQ397_20470 PF01037 Lrp/AsnC ligand binding domain HQ397_20510 PF14581 SseB protein C-terminal domain HQ397_20510 PF07179 SseB protein N-terminal domain HQ397_20515 PF00171 Aldehyde dehydrogenase family HQ397_20520 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_20535 PF13416 Bacterial extracellular solute-binding protein HQ397_20540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_20540 PF03466 LysR substrate binding domain HQ397_20545 PF03553 Na+/H+ antiporter family HQ397_20585 PF00534 Glycosyl transferases group 1 HQ397_20585 PF08323 Starch synthase catalytic domain HQ397_20590 PF00483 Nucleotidyl transferase HQ397_20595 PF05175 Methyltransferase small domain HQ397_20595 PF08468 Methyltransferase small domain N-terminal HQ397_20600 PF00701 Dihydrodipicolinate synthetase family HQ397_20605 PF00990 Diguanylate cyclase, GGDEF domain HQ397_20605 PF00563 EAL domain HQ397_20605 PF01590 GAF domain HQ397_20605 PF00360 Phytochrome region HQ397_20615 PF13419 Haloacid dehalogenase-like hydrolase HQ397_20620 PF17209 Hfq protein HQ397_20625 PF04403 Paraquat-inducible protein A HQ397_20630 PF02470 MlaD protein HQ397_20635 PF03886 ABC-type transport auxiliary lipoprotein component HQ397_20640 PF00691 OmpA family HQ397_20640 PF01389 OmpA-like transmembrane domain HQ397_20650 PF00657 GDSL-like Lipase/Acylhydrolase HQ397_20655 PF04076 Bacterial OB fold (BOF) protein HQ397_20660 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HQ397_20660 PF01464 Transglycosylase SLT domain HQ397_20665 PF04362 Bacterial Fe(2+) trafficking HQ397_20670 PF10576 Iron-sulfur binding domain of endonuclease III HQ397_20670 PF00633 Helix-hairpin-helix motif HQ397_20670 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ397_20670 PF14815 NUDIX domain HQ397_20675 PF16537 Type II secretion system protein B HQ397_20680 PF13401 AAA domain HQ397_20680 PF01471 Putative peptidoglycan binding domain HQ397_20685 PF01966 HD domain HQ397_20685 PF01743 Poly A polymerase head domain HQ397_20685 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ397_20700 PF04172 LrgB-like family HQ397_20705 PF03788 LrgA family HQ397_20710 PF03466 LysR substrate binding domain HQ397_20710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_20715 PF00392 Bacterial regulatory proteins, gntR family HQ397_20715 PF00155 Aminotransferase class I and II HQ397_20735 PF07350 Protein of unknown function (DUF1479) HQ397_20740 PF04073 Aminoacyl-tRNA editing domain HQ397_20745 PF01384 Phosphate transporter family HQ397_20750 PF01865 Protein of unknown function DUF47 HQ397_20765 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ397_20770 PF00294 pfkB family carbohydrate kinase HQ397_20770 PF01467 Cytidylyltransferase-like HQ397_20775 PF02321 Outer membrane efflux protein HQ397_20780 PF00293 NUDIX domain HQ397_20785 PF06853 Protein of unknown function (DUF1249) HQ397_20790 PF00149 Calcineurin-like phosphoesterase HQ397_20795 PF05728 Uncharacterised protein family (UPF0227) HQ397_20800 PF00293 NUDIX domain HQ397_20810 PF07869 Protein of unknown function (DUF1656) HQ397_20815 PF00529 HlyD membrane-fusion protein of T1SS HQ397_20815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_20820 PF04632 Fusaric acid resistance protein family HQ397_20825 PF00204 DNA gyrase B HQ397_20825 PF00986 DNA gyrase B subunit, carboxyl terminus HQ397_20825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_20825 PF01751 Toprim domain HQ397_20830 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ397_20830 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ397_20835 PF07087 Protein of unknown function (DUF1353) HQ397_20870 PF00684 DnaJ central domain HQ397_20870 PF01556 DnaJ C terminal domain HQ397_20870 PF00226 DnaJ domain HQ397_20875 PF00578 AhpC/TSA family HQ397_20895 PF01553 Acyltransferase HQ397_20900 PF04012 PspA/IM30 family HQ397_20915 PF01541 GIY-YIG catalytic domain HQ397_20925 PF00892 EamA-like transporter family HQ397_20930 PF03167 Uracil DNA glycosylase superfamily HQ397_20935 PF00892 EamA-like transporter family HQ397_20940 PF03466 LysR substrate binding domain HQ397_20940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_20945 PF00950 ABC 3 transport family HQ397_20950 PF00005 ABC transporter HQ397_20955 PF01297 Zinc-uptake complex component A periplasmic HQ397_20975 PF01551 Peptidase family M23 HQ397_20975 PF08525 Opacity-associated protein A N-terminal motif HQ397_20975 PF01476 LysM domain HQ397_20980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_20985 PF04222 Protein of unknown function (DUF416) HQ397_21000 PF02028 BCCT, betaine/carnitine/choline family transporter HQ397_21005 PF00488 MutS domain V HQ397_21005 PF05190 MutS family domain IV HQ397_21005 PF01624 MutS domain I HQ397_21005 PF05192 MutS domain III HQ397_21005 PF05188 MutS domain II HQ397_21010 PF02464 Competence-damaged protein HQ397_21015 PF00154 recA bacterial DNA recombination protein HQ397_21020 PF02631 RecX family HQ397_21025 PF01411 tRNA synthetases class II (A) HQ397_21025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ397_21025 PF02272 DHHA1 domain HQ397_21030 PF01842 ACT domain HQ397_21030 PF13840 ACT domain HQ397_21030 PF00696 Amino acid kinase family HQ397_21035 PF02599 Global regulator protein family HQ397_21075 PF09335 SNARE associated Golgi protein HQ397_21080 PF01595 Cyclin M transmembrane N-terminal domain HQ397_21080 PF00571 CBS domain HQ397_21080 PF03471 Transporter associated domain HQ397_21085 PF08264 Anticodon-binding domain of tRNA HQ397_21085 PF10458 Valyl tRNA synthetase tRNA binding arm HQ397_21085 PF00133 tRNA synthetases class I (I, L, M and V) HQ397_21090 PF04364 DNA polymerase III chi subunit, HolC HQ397_21095 PF00883 Cytosol aminopeptidase family, catalytic domain HQ397_21095 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ397_21100 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ397_21105 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ397_21330 PF02899 Phage integrase, N-terminal SAM-like domain HQ397_21330 PF00589 Phage integrase family HQ397_21335 PF00909 Ammonium Transporter Family HQ397_21340 PF01938 TRAM domain HQ397_21340 PF05958 tRNA (Uracil-5-)-methyltransferase HQ397_21350 PF07963 Prokaryotic N-terminal methylation motif HQ397_21355 PF01026 TatD related DNase HQ397_21360 PF07670 Nucleoside recognition HQ397_21360 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_21360 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_21370 PF01791 DeoC/LacD family aldolase HQ397_21375 PF02885 Glycosyl transferase family, helical bundle domain HQ397_21375 PF00591 Glycosyl transferase family, a/b domain HQ397_21375 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HQ397_21380 PF01676 Metalloenzyme superfamily HQ397_21385 PF01048 Phosphorylase superfamily HQ397_21390 PF08448 PAS fold HQ397_21390 PF00990 Diguanylate cyclase, GGDEF domain HQ397_21390 PF05231 MASE1 HQ397_21390 PF00563 EAL domain HQ397_21390 PF08447 PAS fold HQ397_21390 PF13426 PAS domain HQ397_21400 PF18429 Domain of unknown function (DUF5609) HQ397_21415 PF18073 Rubredoxin metal binding domain HQ397_21420 PF07238 PilZ domain HQ397_21425 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HQ397_21435 PF00216 Bacterial DNA-binding protein HQ397_21450 PF01207 Dihydrouridine synthase (Dus) HQ397_21455 PF01475 Ferric uptake regulator family HQ397_21470 PF05525 Branched-chain amino acid transport protein HQ397_21475 PF05525 Branched-chain amino acid transport protein HQ397_21480 PF05175 Methyltransferase small domain HQ397_21485 PF00270 DEAD/DEAH box helicase HQ397_21485 PF00271 Helicase conserved C-terminal domain HQ397_21490 PF03883 Peroxide stress protein YaaA HQ397_21495 PF00437 Type II/IV secretion system protein HQ397_21500 PF00437 Type II/IV secretion system protein HQ397_21505 PF01168 Alanine racemase, N-terminal domain HQ397_21510 PF14748 Pyrroline-5-carboxylate reductase dimerisation HQ397_21510 PF03807 NADP oxidoreductase coenzyme F420-dependent HQ397_21515 PF02325 YGGT family HQ397_21520 PF02594 Uncharacterised ACR, YggU family COG1872 HQ397_21535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_21545 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_21550 PF10952 Protein of unknown function (DUF2753) HQ397_21555 PF00378 Enoyl-CoA hydratase/isomerase HQ397_21570 PF00106 short chain dehydrogenase HQ397_21575 PF03129 Anticodon binding domain HQ397_21575 PF04073 Aminoacyl-tRNA editing domain HQ397_21575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ397_21580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_21580 PF00672 HAMP domain HQ397_21585 PF07499 RuvA, C-terminal domain HQ397_21585 PF01330 RuvA N terminal domain HQ397_21590 PF17864 RuvB AAA lid domain HQ397_21590 PF05491 RuvB C-terminal winged helix domain HQ397_21590 PF05496 Holliday junction DNA helicase RuvB P-loop domain HQ397_21595 PF01654 Cytochrome bd terminal oxidase subunit I HQ397_21600 PF02322 Cytochrome bd terminal oxidase subunit II HQ397_21605 PF08173 Membrane bound YbgT-like protein HQ397_21610 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HQ397_21615 PF03061 Thioesterase superfamily HQ397_21620 PF01618 MotA/TolQ/ExbB proton channel family HQ397_21625 PF02472 Biopolymer transport protein ExbD/TolR HQ397_21635 PF04052 TolB amino-terminal domain HQ397_21635 PF07676 WD40-like Beta Propeller Repeat HQ397_21640 PF00691 OmpA family HQ397_21645 PF13174 Tetratricopeptide repeat HQ397_21645 PF16331 TolA binding protein trimerisation HQ397_21720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_21720 PF00672 HAMP domain HQ397_21725 PF02445 Quinolinate synthetase A protein HQ397_21730 PF01263 Aldose 1-epimerase HQ397_21735 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ397_21735 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ397_21740 PF02446 4-alpha-glucanotransferase HQ397_21745 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ397_21745 PF02806 Alpha amylase, C-terminal all-beta domain HQ397_21745 PF00128 Alpha amylase, catalytic domain HQ397_21750 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ397_21750 PF00128 Alpha amylase, catalytic domain HQ397_21755 PF01641 SelR domain HQ397_21765 PF00293 NUDIX domain HQ397_21770 PF00107 Zinc-binding dehydrogenase HQ397_21770 PF16884 N-terminal domain of oxidoreductase HQ397_21775 PF02566 OsmC-like protein HQ397_21780 PF01047 MarR family HQ397_21795 PF01037 Lrp/AsnC ligand binding domain HQ397_21805 PF07690 Major Facilitator Superfamily HQ397_21830 PF00209 Sodium:neurotransmitter symporter family HQ397_21840 PF00209 Sodium:neurotransmitter symporter family HQ397_21865 PF00392 Bacterial regulatory proteins, gntR family HQ397_21865 PF00155 Aminotransferase class I and II HQ397_21875 PF01810 LysE type translocator HQ397_21880 PF01177 Asp/Glu/Hydantoin racemase HQ397_21885 PF00394 Multicopper oxidase HQ397_21885 PF07731 Multicopper oxidase HQ397_21885 PF07732 Multicopper oxidase HQ397_21895 PF04074 YhcH/YjgK/YiaL HQ397_21900 PF00871 Acetokinase family HQ397_21905 PF00924 Mechanosensitive ion channel HQ397_21910 PF17969 L,D-transpeptidase C-terminal domain HQ397_21910 PF03734 L,D-transpeptidase catalytic domain HQ397_21915 PF00474 Sodium:solute symporter family HQ397_21925 PF13411 MerR HTH family regulatory protein HQ397_21960 PF02525 Flavodoxin-like fold HQ397_21965 PF03466 LysR substrate binding domain HQ397_21965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_21970 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HQ397_21980 PF12848 ABC transporter HQ397_21980 PF00005 ABC transporter HQ397_21985 PF01380 SIS domain HQ397_21985 PF00571 CBS domain HQ397_21990 PF01957 NfeD-like C-terminal, partner-binding HQ397_21995 PF16200 C-terminal region of band_7 HQ397_21995 PF01145 SPFH domain / Band 7 family HQ397_22000 PF10414 Sirohaem synthase dimerisation region HQ397_22000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ397_22000 PF14824 Sirohaem biosynthesis protein central HQ397_22005 PF01507 Phosphoadenosine phosphosulfate reductase family HQ397_22010 PF00009 Elongation factor Tu GTP binding domain HQ397_22015 PF03600 Citrate transporter HQ397_22015 PF02080 TrkA-C domain HQ397_22040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_22040 PF08447 PAS fold HQ397_22060 PF00005 ABC transporter HQ397_22075 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HQ397_22090 PF00719 Inorganic pyrophosphatase HQ397_22095 PF08245 Mur ligase middle domain HQ397_22095 PF02875 Mur ligase family, glutamate ligase domain HQ397_22095 PF01225 Mur ligase family, catalytic domain HQ397_22100 PF02441 Flavoprotein HQ397_22105 PF00440 Bacterial regulatory proteins, tetR family HQ397_22110 PF00156 Phosphoribosyl transferase domain HQ397_22115 PF00005 ABC transporter HQ397_22120 PF01061 ABC-2 type transporter HQ397_22125 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HQ397_22130 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ397_22160 PF02569 Pantoate-beta-alanine ligase HQ397_22165 PF02548 Ketopantoate hydroxymethyltransferase HQ397_22170 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ397_22175 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ397_22175 PF12626 Polymerase A arginine-rich C-terminus HQ397_22175 PF01743 Poly A polymerase head domain HQ397_22180 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ397_22185 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ397_22190 PF17746 SfsA N-terminal OB domain HQ397_22190 PF03749 Sugar fermentation stimulation protein RE domain HQ397_22205 PF14814 Bifunctional transglycosylase second domain HQ397_22205 PF00912 Transglycosylase HQ397_22205 PF00905 Penicillin binding protein transpeptidase domain HQ397_22210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_22215 PF00893 Small Multidrug Resistance protein HQ397_22220 PF00893 Small Multidrug Resistance protein HQ397_22230 PF11849 Domain of unknown function (DUF3369) HQ397_22240 PF01569 PAP2 superfamily HQ397_22255 PF00202 Aminotransferase class-III HQ397_22260 PF00654 Voltage gated chloride channel HQ397_22270 PF01521 Iron-sulphur cluster biosynthesis HQ397_22300 PF02867 Ribonucleotide reductase, barrel domain HQ397_22300 PF00317 Ribonucleotide reductase, all-alpha domain HQ397_22300 PF08343 Ribonucleotide reductase N-terminal HQ397_22310 PF02562 PhoH-like protein HQ397_22310 PF13638 PIN domain HQ397_22320 PF00005 ABC transporter HQ397_22325 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_22345 PF00694 Aconitase C-terminal domain HQ397_22350 PF00330 Aconitase family (aconitate hydratase) HQ397_22355 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ397_22360 PF00682 HMGL-like HQ397_22360 PF08502 LeuA allosteric (dimerisation) domain HQ397_22370 PF01569 PAP2 superfamily HQ397_22385 PF00205 Thiamine pyrophosphate enzyme, central domain HQ397_22385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ397_22385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_22390 PF10369 Small subunit of acetolactate synthase HQ397_22395 PF07085 DRTGG domain HQ397_22395 PF01515 Phosphate acetyl/butaryl transferase HQ397_22400 PF00871 Acetokinase family HQ397_22405 PF04217 Protein of unknown function, DUF412 HQ397_22410 PF03887 YfbU domain HQ397_22415 PF00578 AhpC/TSA family HQ397_22420 PF01842 ACT domain HQ397_22425 PF00701 Dihydrodipicolinate synthetase family HQ397_22430 PF06804 NlpB/DapX lipoprotein HQ397_22435 PF01259 SAICAR synthetase HQ397_22445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_22445 PF03466 LysR substrate binding domain HQ397_22450 PF09829 Uncharacterized protein conserved in bacteria (DUF2057)