locus-tag class description RY45_00005 PF11638 DnaA N-terminal domain RY45_00005 PF08299 Bacterial dnaA protein helix-turn-helix RY45_00005 PF00308 Bacterial dnaA protein RY45_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RY45_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RY45_00010 PF02767 DNA polymerase III beta subunit, central domain RY45_00015 PF02463 RecF/RecN/SMC N terminal domain RY45_00020 PF00986 DNA gyrase B subunit, carboxyl terminus RY45_00020 PF00204 DNA gyrase B RY45_00020 PF18053 DNA gyrase B subunit insert domain RY45_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_00020 PF01751 Toprim domain RY45_00030 PF08279 HTH domain RY45_00030 PF13280 WYL domain RY45_00035 PF00011 Hsp20/alpha crystallin family RY45_00040 PF00011 Hsp20/alpha crystallin family RY45_00045 PF00155 Aminotransferase class I and II RY45_00060 PF07690 Major Facilitator Superfamily RY45_00065 PF00486 Transcriptional regulatory protein, C terminal RY45_00065 PF00072 Response regulator receiver domain RY45_00070 PF00512 His Kinase A (phospho-acceptor) domain RY45_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain RY45_00070 PF13493 Domain of unknown function (DUF4118) RY45_00070 PF13492 GAF domain RY45_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_00075 PF02669 K+-transporting ATPase, c chain RY45_00085 PF03814 Potassium-transporting ATPase A subunit RY45_00090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_00090 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_00095 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_00095 PF00512 His Kinase A (phospho-acceptor) domain RY45_00100 PF00873 AcrB/AcrD/AcrF family RY45_00105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_00110 PF00440 Bacterial regulatory proteins, tetR family RY45_00140 PF02887 Pyruvate kinase, alpha/beta domain RY45_00140 PF00224 Pyruvate kinase, barrel domain RY45_00145 PF07690 Major Facilitator Superfamily RY45_00155 PF00672 HAMP domain RY45_00155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_00155 PF00512 His Kinase A (phospho-acceptor) domain RY45_00160 PF02954 Bacterial regulatory protein, Fis family RY45_00160 PF00072 Response regulator receiver domain RY45_00160 PF14532 Sigma-54 interaction domain RY45_00175 PF12146 Serine aminopeptidase, S33 RY45_00180 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_00185 PF00588 SpoU rRNA Methylase family RY45_00185 PF12105 SpoU, rRNA methylase, C-terminal RY45_00190 PF13291 ACT domain RY45_00190 PF04607 Region found in RelA / SpoT proteins RY45_00190 PF02824 TGS domain RY45_00195 PF01192 RNA polymerase Rpb6 RY45_00200 PF00625 Guanylate kinase RY45_00205 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_00220 PF00892 EamA-like transporter family RY45_00235 PF03466 LysR substrate binding domain RY45_00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_00240 PF00579 tRNA synthetases class I (W and Y) RY45_00245 PF00582 Universal stress protein family RY45_00250 PF12241 Trans-2-enoyl-CoA reductase catalytic region RY45_00250 PF07055 Enoyl reductase FAD binding domain RY45_00250 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RY45_00255 PF00990 Diguanylate cyclase, GGDEF domain RY45_00255 PF08448 PAS fold RY45_00260 PF00210 Ferritin-like domain RY45_00270 PF07690 Major Facilitator Superfamily RY45_00275 PF01810 LysE type translocator RY45_00290 PF16967 E-set like domain RY45_00290 PF15976 CS1-pili formation C-terminal RY45_00295 PF18649 EcpB C-terminal domain RY45_00300 PF16449 Fimbrillin MatB RY45_00305 PF00196 Bacterial regulatory proteins, luxR family RY45_00305 PF00072 Response regulator receiver domain RY45_00310 PF01627 Hpt domain RY45_00310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_00310 PF00512 His Kinase A (phospho-acceptor) domain RY45_00310 PF00989 PAS fold RY45_00310 PF00072 Response regulator receiver domain RY45_00310 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_00320 PF06580 Histidine kinase RY45_00320 PF07694 5TMR of 5TMR-LYT RY45_00320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_00325 PF04397 LytTr DNA-binding domain RY45_00325 PF00072 Response regulator receiver domain RY45_00330 PF07690 Major Facilitator Superfamily RY45_00335 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RY45_00335 PF02222 ATP-grasp domain RY45_00340 PF00731 AIR carboxylase RY45_00385 PF17482 Phage tail sheath C-terminal domain RY45_00385 PF04984 Phage tail sheath protein subtilisin-like domain RY45_00535 PF05840 Bacteriophage replication gene A protein (GPA) RY45_00600 PF06892 Phage regulatory protein CII (CP76) RY45_00620 PF02899 Phage integrase, N-terminal SAM-like domain RY45_00620 PF00589 Phage integrase family RY45_00625 PF03466 LysR substrate binding domain RY45_00625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_00630 PF00593 TonB dependent receptor RY45_00630 PF07715 TonB-dependent Receptor Plug Domain RY45_00680 PF07969 Amidohydrolase family RY45_00685 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RY45_00690 PF01209 ubiE/COQ5 methyltransferase family RY45_00695 PF02036 SCP-2 sterol transfer family RY45_00700 PF03109 ABC1 family RY45_00705 PF02416 mttA/Hcf106 family RY45_00710 PF02416 mttA/Hcf106 family RY45_00715 PF00902 Sec-independent protein translocase protein (TatC) RY45_00720 PF01026 TatD related DNase RY45_00725 PF00490 Delta-aminolevulinic acid dehydratase RY45_00730 PF01432 Peptidase family M3 RY45_00735 PF00563 EAL domain RY45_00735 PF00990 Diguanylate cyclase, GGDEF domain RY45_00735 PF03707 Bacterial signalling protein N terminal repeat RY45_00740 PF04445 Putative SAM-dependent methyltransferase RY45_00755 PF02541 Ppx/GppA phosphatase family RY45_00760 PF00271 Helicase conserved C-terminal domain RY45_00760 PF00270 DEAD/DEAH box helicase RY45_00765 PF00085 Thioredoxin RY45_00770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_00770 PF07497 Rho termination factor, RNA-binding domain RY45_00770 PF07498 Rho termination factor, N-terminal domain RY45_00780 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RY45_00785 PF00175 Oxidoreductase NAD-binding domain RY45_00790 PF04380 Membrane fusogenic activity RY45_00795 PF12262 Bacterial virulence factor lipase N-terminal RY45_00800 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease RY45_00800 PF01694 Rhomboid family RY45_00805 PF00581 Rhodanese-like domain RY45_00820 PF00005 ABC transporter RY45_00825 PF00005 ABC transporter RY45_00825 PF12399 Branched-chain amino acid ATP-binding cassette transporter RY45_00830 PF11862 Domain of unknown function (DUF3382) RY45_00830 PF02653 Branched-chain amino acid transport system / permease component RY45_00835 PF02653 Branched-chain amino acid transport system / permease component RY45_00840 PF13458 Periplasmic binding protein RY45_00845 PF00356 Bacterial regulatory proteins, lacI family RY45_00850 PF02056 Family 4 glycosyl hydrolase RY45_00850 PF11975 Family 4 glycosyl hydrolase C-terminal domain RY45_00855 PF00367 phosphotransferase system, EIIB RY45_00855 PF02378 Phosphotransferase system, EIIC RY45_00860 PF07702 UTRA domain RY45_00860 PF00392 Bacterial regulatory proteins, gntR family RY45_00865 PF00158 Sigma-54 interaction domain RY45_00865 PF01590 GAF domain RY45_00870 PF00258 Flavodoxin RY45_00870 PF00753 Metallo-beta-lactamase superfamily RY45_00870 PF00301 Rubredoxin RY45_00875 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_00875 PF18113 Rubredoxin binding C-terminal domain RY45_00885 PF12801 4Fe-4S binding domain RY45_00890 PF03222 Tryptophan/tyrosine permease family RY45_00900 PF05932 Tir chaperone protein (CesT) family RY45_00905 PF03545 Yersinia virulence determinant (YopE) RY45_00905 PF03496 ADP-ribosyltransferase exoenzyme RY45_00925 PF05746 DALR anticodon binding domain RY45_00925 PF02092 Glycyl-tRNA synthetase beta subunit RY45_00930 PF02091 Glycyl-tRNA synthetase alpha subunit RY45_00935 PF03352 Methyladenine glycosylase RY45_00940 PF00857 Isochorismatase family RY45_00945 PF13488 Glycine zipper RY45_00945 PF00691 OmpA family RY45_00955 PF01042 Endoribonuclease L-PSP RY45_00960 PF01206 Sulfurtransferase TusA RY45_00970 PF01547 Bacterial extracellular solute-binding protein RY45_00975 PF00512 His Kinase A (phospho-acceptor) domain RY45_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_00975 PF00672 HAMP domain RY45_00980 PF00072 Response regulator receiver domain RY45_00980 PF00486 Transcriptional regulatory protein, C terminal RY45_00985 PF00108 Thiolase, N-terminal domain RY45_00985 PF02803 Thiolase, C-terminal domain RY45_00990 PF00378 Enoyl-CoA hydratase/isomerase RY45_00990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RY45_00990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RY45_00995 PF13193 AMP-binding enzyme C-terminal domain RY45_00995 PF00501 AMP-binding enzyme RY45_01000 PF00557 Metallopeptidase family M24 RY45_01005 PF01205 Uncharacterized protein family UPF0029 RY45_01005 PF09186 Domain of unknown function (DUF1949) RY45_01010 PF02386 Cation transport protein RY45_01015 PF12724 Flavodoxin domain RY45_01040 PF00583 Acetyltransferase (GNAT) family RY45_01040 PF13380 CoA binding domain RY45_01040 PF13607 Succinyl-CoA ligase like flavodoxin domain RY45_01055 PF03466 LysR substrate binding domain RY45_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_01060 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RY45_01060 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RY45_01065 PF00342 Phosphoglucose isomerase RY45_01080 PF00924 Mechanosensitive ion channel RY45_01080 PF05552 Conserved TM helix RY45_01085 PF00440 Bacterial regulatory proteins, tetR family RY45_01090 PF00692 dUTPase RY45_01095 PF02441 Flavoprotein RY45_01095 PF04127 DNA / pantothenate metabolism flavoprotein RY45_01100 PF04002 RadC-like JAB domain RY45_01105 PF00471 Ribosomal protein L33 RY45_01115 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RY45_01115 PF06827 Zinc finger found in FPG and IleRS RY45_01115 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RY45_01120 PF04393 Protein of unknown function (DUF535) RY45_01125 PF01467 Cytidylyltransferase-like RY45_01130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_01135 PF00535 Glycosyl transferase family 2 RY45_01140 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_01145 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RY45_01150 PF03611 PTS system sugar-specific permease component RY45_01160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_01165 PF00356 Bacterial regulatory proteins, lacI family RY45_01165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_01170 PF08240 Alcohol dehydrogenase GroES-like domain RY45_01170 PF00107 Zinc-binding dehydrogenase RY45_01180 PF03748 Flagellar basal body-associated protein FliL RY45_01185 PF04345 Chorismate lyase RY45_01190 PF01040 UbiA prenyltransferase family RY45_01195 PF01553 Acyltransferase RY45_01200 PF00717 Peptidase S24-like RY45_01200 PF01726 LexA DNA binding domain RY45_01210 PF02630 SCO1/SenC RY45_01215 PF01554 MatE RY45_01220 PF00588 SpoU rRNA Methylase family RY45_01225 PF00672 HAMP domain RY45_01225 PF16527 Two-component sensor protein CpxA, periplasmic domain RY45_01225 PF00512 His Kinase A (phospho-acceptor) domain RY45_01225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_01230 PF00486 Transcriptional regulatory protein, C terminal RY45_01230 PF00072 Response regulator receiver domain RY45_01235 PF16916 Dimerisation domain of Zinc Transporter RY45_01235 PF01545 Cation efflux family RY45_01240 PF06426 Serine acetyltransferase, N-terminal RY45_01240 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_01250 PF06005 Cell division protein ZapB RY45_01260 PF01367 5'-3' exonuclease, C-terminal SAM fold RY45_01260 PF01612 3'-5' exonuclease RY45_01260 PF00476 DNA polymerase family A RY45_01260 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RY45_01265 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_01305 PF00356 Bacterial regulatory proteins, lacI family RY45_01310 PF02837 Glycosyl hydrolases family 2, sugar binding domain RY45_01310 PF02929 Beta galactosidase small chain RY45_01310 PF00703 Glycosyl hydrolases family 2 RY45_01310 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RY45_01310 PF16353 Domain of unknown function(DUF4981) RY45_01315 PF04074 YhcH/YjgK/YiaL RY45_01320 PF13520 Amino acid permease RY45_01325 PF01588 Putative tRNA binding domain RY45_01330 PF13520 Amino acid permease RY45_01335 PF13593 SBF-like CPA transporter family (DUF4137) RY45_01340 PF12867 DinB superfamily RY45_01340 PF03781 Sulfatase-modifying factor enzyme 1 RY45_01350 PF00756 Putative esterase RY45_01355 PF00107 Zinc-binding dehydrogenase RY45_01355 PF08240 Alcohol dehydrogenase GroES-like domain RY45_01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_01360 PF03466 LysR substrate binding domain RY45_01385 PF13361 UvrD-like helicase C-terminal domain RY45_01385 PF00580 UvrD/REP helicase N-terminal domain RY45_01405 PF03466 LysR substrate binding domain RY45_01405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_01425 PF14001 YdfZ protein RY45_01460 PF01810 LysE type translocator RY45_01470 PF04143 Sulphur transport RY45_01475 PF00690 Cation transporter/ATPase, N-terminus RY45_01475 PF00689 Cation transporting ATPase, C-terminus RY45_01480 PF01810 LysE type translocator RY45_01485 PF12833 Helix-turn-helix domain RY45_01490 PF00892 EamA-like transporter family RY45_01495 PF00171 Aldehyde dehydrogenase family RY45_01500 PF01381 Helix-turn-helix RY45_01500 PF07883 Cupin domain RY45_01505 PF00202 Aminotransferase class-III RY45_01510 PF00171 Aldehyde dehydrogenase family RY45_01515 PF00117 Glutamine amidotransferase class-I RY45_01515 PF00958 GMP synthase C terminal domain RY45_01515 PF02540 NAD synthase RY45_01520 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RY45_01520 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RY45_01525 PF00294 pfkB family carbohydrate kinase RY45_01530 PF02082 Transcriptional regulator RY45_01550 PF02386 Cation transport protein RY45_01555 PF02254 TrkA-N domain RY45_01555 PF02080 TrkA-C domain RY45_01560 PF01189 16S rRNA methyltransferase RsmB/F RY45_01560 PF01029 NusB family RY45_01565 PF02911 Formyl transferase, C-terminal domain RY45_01565 PF00551 Formyl transferase RY45_01570 PF01327 Polypeptide deformylase RY45_01580 PF02481 DNA recombination-mediator protein A RY45_01580 PF17782 DprA winged helix domain RY45_01585 PF04361 Protein of unknown function (DUF494) RY45_01590 PF01396 Topoisomerase DNA binding C4 zinc finger RY45_01595 PF00731 AIR carboxylase RY45_01600 PF01300 Telomere recombination RY45_01605 PF01218 Coproporphyrinogen III oxidase RY45_01610 PF01488 Shikimate / quinate 5-dehydrogenase RY45_01610 PF08501 Shikimate dehydrogenase substrate binding domain RY45_01610 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RY45_01615 PF07369 Protein of unknown function (DUF1488) RY45_01620 PF01926 50S ribosome-binding GTPase RY45_01625 PF00034 Cytochrome c RY45_01635 PF04220 Der GTPase activator (YihI) RY45_01640 PF10675 Protein of unknown function (DUF2489) RY45_01645 PF06969 HemN C-terminal domain RY45_01645 PF04055 Radical SAM superfamily RY45_01650 PF00962 Adenosine/AMP deaminase RY45_01655 PF00158 Sigma-54 interaction domain RY45_01655 PF00072 Response regulator receiver domain RY45_01655 PF02954 Bacterial regulatory protein, Fis family RY45_01660 PF00989 PAS fold RY45_01660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_01660 PF00512 His Kinase A (phospho-acceptor) domain RY45_01670 PF00120 Glutamine synthetase, catalytic domain RY45_01670 PF03951 Glutamine synthetase, beta-Grasp domain RY45_01680 PF03631 Virulence factor BrkB RY45_01685 PF03631 Virulence factor BrkB RY45_01690 PF02580 D-Tyr-tRNA(Tyr) deacylase RY45_01705 PF09500 Putative thioesterase (yiiD_Cterm) RY45_01705 PF00583 Acetyltransferase (GNAT) family RY45_01715 PF00270 DEAD/DEAH box helicase RY45_01715 PF00271 Helicase conserved C-terminal domain RY45_01715 PF17191 RecG wedge domain RY45_01720 PF13091 PLD-like domain RY45_01725 PF02447 GntP family permease RY45_01730 PF01202 Shikimate kinase RY45_01735 PF00920 Dehydratase family RY45_01740 PF01081 KDPG and KHG aldolase RY45_01745 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_01745 PF00356 Bacterial regulatory proteins, lacI family RY45_01755 PF01551 Peptidase family M23 RY45_01760 PF01676 Metalloenzyme superfamily RY45_01760 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RY45_01765 PF00581 Rhodanese-like domain RY45_01770 PF02556 Preprotein translocase subunit SecB RY45_01775 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RY45_01775 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RY45_01780 PF01521 Iron-sulphur cluster biosynthesis RY45_01780 PF01106 NifU-like domain RY45_01785 PF00156 Phosphoribosyl transferase domain RY45_01790 PF00561 alpha/beta hydrolase fold RY45_01810 PF17674 HHH domain RY45_01810 PF00575 S1 RNA binding domain RY45_01810 PF09371 Tex-like protein N-terminal domain RY45_01810 PF16921 Tex protein YqgF-like domain RY45_01815 PF03449 Transcription elongation factor, N-terminal RY45_01815 PF01272 Transcription elongation factor, GreA/GreB, C-term RY45_01820 PF00486 Transcriptional regulatory protein, C terminal RY45_01820 PF00072 Response regulator receiver domain RY45_01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_01825 PF00512 His Kinase A (phospho-acceptor) domain RY45_01825 PF00672 HAMP domain RY45_01835 PF00338 Ribosomal protein S10p/S20e RY45_01840 PF00297 Ribosomal protein L3 RY45_01845 PF00573 Ribosomal protein L4/L1 family RY45_01850 PF00276 Ribosomal protein L23 RY45_01855 PF03947 Ribosomal Proteins L2, C-terminal domain RY45_01855 PF00181 Ribosomal Proteins L2, RNA binding domain RY45_01860 PF00203 Ribosomal protein S19 RY45_01865 PF00237 Ribosomal protein L22p/L17e RY45_01870 PF07650 KH domain RY45_01870 PF00189 Ribosomal protein S3, C-terminal domain RY45_01875 PF00252 Ribosomal protein L16p/L10e RY45_01880 PF00831 Ribosomal L29 protein RY45_01885 PF00366 Ribosomal protein S17 RY45_01890 PF00238 Ribosomal protein L14p/L23e RY45_01895 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RY45_01895 PF00467 KOW motif RY45_01900 PF00281 Ribosomal protein L5 RY45_01900 PF00673 ribosomal L5P family C-terminus RY45_01905 PF00253 Ribosomal protein S14p/S29e RY45_01910 PF00410 Ribosomal protein S8 RY45_01915 PF00347 Ribosomal protein L6 RY45_01920 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RY45_01925 PF00333 Ribosomal protein S5, N-terminal domain RY45_01925 PF03719 Ribosomal protein S5, C-terminal domain RY45_01930 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RY45_01935 PF00344 SecY translocase RY45_01940 PF00416 Ribosomal protein S13/S18 RY45_01945 PF00411 Ribosomal protein S11 RY45_01950 PF01479 S4 domain RY45_01950 PF00163 Ribosomal protein S4/S9 N-terminal domain RY45_01955 PF01000 RNA polymerase Rpb3/RpoA insert domain RY45_01955 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RY45_01955 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RY45_01960 PF01196 Ribosomal protein L17 RY45_02005 PF00999 Sodium/hydrogen exchanger family RY45_02005 PF02254 TrkA-N domain RY45_02010 PF02525 Flavodoxin-like fold RY45_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_02015 PF03466 LysR substrate binding domain RY45_02020 PF00106 short chain dehydrogenase RY45_02035 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RY45_02035 PF00326 Prolyl oligopeptidase family RY45_02050 PF07947 YhhN family RY45_02055 PF07690 Major Facilitator Superfamily RY45_02060 PF13533 Biotin-lipoyl like RY45_02065 PF03466 LysR substrate binding domain RY45_02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_02075 PF00375 Sodium:dicarboxylate symporter family RY45_02080 PF10678 Protein of unknown function (DUF2492) RY45_02085 PF01914 MarC family integral membrane protein RY45_02090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_02090 PF03466 LysR substrate binding domain RY45_02095 PF02416 mttA/Hcf106 family RY45_02105 PF01464 Transglycosylase SLT domain RY45_02110 PF13091 PLD-like domain RY45_02120 PF00440 Bacterial regulatory proteins, tetR family RY45_02140 PF00448 SRP54-type protein, GTPase domain RY45_02140 PF02881 SRP54-type protein, helical bundle domain RY45_02145 PF00005 ABC transporter RY45_02150 PF18075 FtsX extracellular domain RY45_02155 PF00140 Sigma-70 factor, region 1.2 RY45_02155 PF04542 Sigma-70 region 2 RY45_02155 PF04545 Sigma-70, region 4 RY45_02160 PF00484 Carbonic anhydrase RY45_02165 PF07702 UTRA domain RY45_02165 PF00392 Bacterial regulatory proteins, gntR family RY45_02170 PF01979 Amidohydrolase family RY45_02175 PF00491 Arginase family RY45_02180 PF17392 Urocanase C-terminal domain RY45_02180 PF17391 Urocanase N-terminal domain RY45_02180 PF01175 Urocanase Rossmann-like domain RY45_02185 PF00221 Aromatic amino acid lyase RY45_02190 PF01699 Sodium/calcium exchanger protein RY45_02195 PF00563 EAL domain RY45_02195 PF12792 CSS motif domain associated with EAL RY45_02200 PF00563 EAL domain RY45_02200 PF17157 Gammaproteobacterial periplasmic sensor domain RY45_02200 PF00990 Diguanylate cyclase, GGDEF domain RY45_02230 PF03958 Bacterial type II/III secretion system short domain RY45_02230 PF00263 Bacterial type II and III secretion system protein RY45_02245 PF00437 Type II/IV secretion system protein RY45_02245 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RY45_02250 PF00482 Type II secretion system (T2SS), protein F RY45_02265 PF08334 Type II secretion system (T2SS), protein G RY45_02265 PF07963 Prokaryotic N-terminal methylation motif RY45_02270 PF07963 Prokaryotic N-terminal methylation motif RY45_02270 PF14245 Type IV pilin PilA RY45_02300 PF04085 rod shape-determining protein MreC RY45_02305 PF04093 rod shape-determining protein MreD RY45_02310 PF02545 Maf-like protein RY45_02315 PF00575 S1 RNA binding domain RY45_02315 PF10150 Ribonuclease E/G family RY45_02320 PF13116 Protein of unknown function RY45_02320 PF13502 AsmA-like C-terminal region RY45_02330 PF00795 Carbon-nitrogen hydrolase RY45_02335 PF01523 Putative modulator of DNA gyrase RY45_02340 PF01418 Helix-turn-helix domain, rpiR family RY45_02340 PF01380 SIS domain RY45_02355 PF00367 phosphotransferase system, EIIB RY45_02355 PF02378 Phosphotransferase system, EIIC RY45_02360 PF13580 SIS domain RY45_02375 PF01914 MarC family integral membrane protein RY45_02380 PF07690 Major Facilitator Superfamily RY45_02390 PF00072 Response regulator receiver domain RY45_02395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_02395 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RY45_02395 PF01627 Hpt domain RY45_02395 PF00512 His Kinase A (phospho-acceptor) domain RY45_02395 PF00072 Response regulator receiver domain RY45_02395 PF00672 HAMP domain RY45_02400 PF13581 Histidine kinase-like ATPase domain RY45_02405 PF01740 STAS domain RY45_02405 PF08678 Rsbr N terminal RY45_02410 PF08447 PAS fold RY45_02410 PF13426 PAS domain RY45_02410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_02425 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RY45_02430 PF04228 Putative neutral zinc metallopeptidase RY45_02440 PF08668 HDOD domain RY45_02450 PF00999 Sodium/hydrogen exchanger family RY45_02455 PF02574 Homocysteine S-methyltransferase RY45_02455 PF00809 Pterin binding enzyme RY45_02455 PF02310 B12 binding domain RY45_02455 PF02965 Vitamin B12 dependent methionine synthase, activation domain RY45_02455 PF02607 B12 binding domain RY45_02465 PF08443 RimK-like ATP-grasp domain RY45_02465 PF18030 RimK PreATP-grasp domain RY45_02470 PF05525 Branched-chain amino acid transport protein RY45_02480 PF00486 Transcriptional regulatory protein, C terminal RY45_02480 PF00072 Response regulator receiver domain RY45_02500 PF03994 Domain of Unknown Function (DUF350) RY45_02505 PF03738 Glutathionylspermidine synthase preATP-grasp RY45_02510 PF13667 ThiC-associated domain RY45_02510 PF01964 Radical SAM ThiC family RY45_02515 PF02581 Thiamine monophosphate synthase RY45_02520 PF00899 ThiF family RY45_02530 PF05690 Thiazole biosynthesis protein ThiG RY45_02535 PF06968 Biotin and Thiamin Synthesis associated domain RY45_02535 PF04055 Radical SAM superfamily RY45_02550 PF13036 Peptidoglycan-synthase activator LpoB RY45_02570 PF00990 Diguanylate cyclase, GGDEF domain RY45_02570 PF17151 Periplasmic sensor domain RY45_02580 PF06055 Exopolysaccharide synthesis, ExoD RY45_02595 PF08803 Putative mono-oxygenase ydhR RY45_02600 PF01638 HxlR-like helix-turn-helix RY45_02625 PF00593 TonB dependent receptor RY45_02625 PF07715 TonB-dependent Receptor Plug Domain RY45_02640 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RY45_02645 PF03692 Putative zinc- or iron-chelating domain RY45_02655 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase RY45_02660 PF02602 Uroporphyrinogen-III synthase HemD RY45_02665 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RY45_02665 PF03900 Porphobilinogen deaminase, C-terminal domain RY45_02670 PF12633 Adenylate cyclase NT domain RY45_02670 PF01295 Adenylate cyclase, class-I RY45_02675 PF02230 Phospholipase/Carboxylesterase RY45_02680 PF01491 Frataxin-like domain RY45_02685 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RY45_02685 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RY45_02690 PF01678 Diaminopimelate epimerase RY45_02700 PF00589 Phage integrase family RY45_02700 PF02899 Phage integrase, N-terminal SAM-like domain RY45_02705 PF13419 Haloacid dehalogenase-like hydrolase RY45_02715 PF00027 Cyclic nucleotide-binding domain RY45_02715 PF13545 Crp-like helix-turn-helix domain RY45_02725 PF07722 Peptidase C26 RY45_02745 PF00005 ABC transporter RY45_02760 PF02464 Competence-damaged protein RY45_02760 PF00994 Probable molybdopterin binding domain RY45_02765 PF00013 KH domain RY45_02765 PF01966 HD domain RY45_02765 PF12072 Domain of unknown function (DUF3552) RY45_02770 PF04204 Homoserine O-succinyltransferase RY45_02780 PF01037 Lrp/AsnC ligand binding domain RY45_02785 PF00884 Sulfatase RY45_02800 PF00128 Alpha amylase, catalytic domain RY45_02800 PF02903 Alpha amylase, N-terminal ig-like domain RY45_02800 PF16657 Maltogenic Amylase, C-terminal domain RY45_02805 PF02308 MgtC family RY45_02825 PF00106 short chain dehydrogenase RY45_02830 PF03577 Peptidase family C69 RY45_02860 PF01527 Transposase RY45_02865 PF13276 HTH-like domain RY45_02865 PF13333 Integrase core domain RY45_02865 PF00665 Integrase core domain RY45_02895 PF01381 Helix-turn-helix RY45_02905 PF13610 DDE domain RY45_02915 PF00809 Pterin binding enzyme RY45_02920 PF00893 Small Multidrug Resistance protein RY45_02925 PF01909 Nucleotidyltransferase domain RY45_02925 PF13427 Domain of unknown function (DUF4111) RY45_02930 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_02940 PF13610 DDE domain RY45_02950 PF02909 Tetracyclin repressor-like, C-terminal domain RY45_02950 PF00440 Bacterial regulatory proteins, tetR family RY45_02955 PF07690 Major Facilitator Superfamily RY45_02965 PF01613 Flavin reductase like domain RY45_02965 PF00258 Flavodoxin RY45_02975 PF00465 Iron-containing alcohol dehydrogenase RY45_02985 PF01053 Cys/Met metabolism PLP-dependent enzyme RY45_02990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_02990 PF12793 Sugar transport-related sRNA regulator N-term RY45_03005 PF03280 Proteobacterial lipase chaperone protein RY45_03010 PF00561 alpha/beta hydrolase fold RY45_03020 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RY45_03020 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RY45_03025 PF02698 DUF218 domain RY45_03030 PF01752 Collagenase RY45_03030 PF08453 Peptidase family M9 N-terminal RY45_03040 PF00419 Fimbrial protein RY45_03050 PF00577 Outer membrane usher protein RY45_03050 PF13953 PapC C-terminal domain RY45_03050 PF13954 PapC N-terminal domain RY45_03055 PF02753 Pili assembly chaperone PapD, C-terminal domain RY45_03055 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RY45_03065 PF00419 Fimbrial protein RY45_03075 PF00501 AMP-binding enzyme RY45_03080 PF13378 Enolase C-terminal domain-like RY45_03085 PF00378 Enoyl-CoA hydratase/isomerase RY45_03090 PF12697 Alpha/beta hydrolase family RY45_03095 PF16582 Middle domain of thiamine pyrophosphate RY45_03095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_03095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RY45_03100 PF00425 chorismate binding enzyme RY45_03105 PF01040 UbiA prenyltransferase family RY45_03130 PF00270 DEAD/DEAH box helicase RY45_03130 PF00271 Helicase conserved C-terminal domain RY45_03130 PF03880 DbpA RNA binding domain RY45_03135 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_03135 PF07670 Nucleoside recognition RY45_03135 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_03140 PF04307 LexA-binding, inner membrane-associated putative hydrolase RY45_03155 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RY45_03160 PF01544 CorA-like Mg2+ transporter protein RY45_03180 PF02080 TrkA-C domain RY45_03180 PF03471 Transporter associated domain RY45_03180 PF00999 Sodium/hydrogen exchanger family RY45_03185 PF05068 Mannitol repressor RY45_03190 PF01232 Mannitol dehydrogenase Rossmann domain RY45_03190 PF08125 Mannitol dehydrogenase C-terminal domain RY45_03195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_03195 PF02378 Phosphotransferase system, EIIC RY45_03195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_03205 PF00440 Bacterial regulatory proteins, tetR family RY45_03210 PF08206 Ribonuclease B OB domain RY45_03210 PF00773 RNB domain RY45_03210 PF17876 Cold shock domain RY45_03215 PF03466 LysR substrate binding domain RY45_03215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_03220 PF00765 Autoinducer synthase RY45_03225 PF03472 Autoinducer binding domain RY45_03225 PF00196 Bacterial regulatory proteins, luxR family RY45_03230 PF01810 LysE type translocator RY45_03235 PF00149 Calcineurin-like phosphoesterase RY45_03235 PF02872 5'-nucleotidase, C-terminal domain RY45_03240 PF05433 Glycine zipper 2TM domain RY45_03245 PF00583 Acetyltransferase (GNAT) family RY45_03250 PF11756 Nitrous oxide-stimulated promoter RY45_03255 PF00557 Metallopeptidase family M24 RY45_03255 PF01321 Creatinase/Prolidase N-terminal domain RY45_03260 PF00392 Bacterial regulatory proteins, gntR family RY45_03265 PF01293 Phosphoenolpyruvate carboxykinase RY45_03270 PF01430 Hsp33 protein RY45_03275 PF01479 S4 domain RY45_03280 PF11356 Type II secretion system protein C RY45_03285 PF00263 Bacterial type II and III secretion system protein RY45_03285 PF03958 Bacterial type II/III secretion system short domain RY45_03290 PF00437 Type II/IV secretion system protein RY45_03295 PF00482 Type II secretion system (T2SS), protein F RY45_03300 PF07963 Prokaryotic N-terminal methylation motif RY45_03300 PF08334 Type II secretion system (T2SS), protein G RY45_03305 PF12019 Type II transport protein GspH RY45_03305 PF07963 Prokaryotic N-terminal methylation motif RY45_03310 PF07963 Prokaryotic N-terminal methylation motif RY45_03310 PF02501 Type II secretion system (T2SS), protein I RY45_03315 PF07963 Prokaryotic N-terminal methylation motif RY45_03315 PF11612 Type II secretion system (T2SS), protein J RY45_03320 PF03934 Type II secretion system (T2SS), protein K RY45_03325 PF12693 GspL periplasmic domain RY45_03325 PF05134 Type II secretion system (T2SS), protein L RY45_03330 PF04612 Type II secretion system (T2SS), protein M RY45_03335 PF01203 Type II secretion system (T2SS), protein N RY45_03340 PF00196 Bacterial regulatory proteins, luxR family RY45_03345 PF00579 tRNA synthetases class I (W and Y) RY45_03345 PF01479 S4 domain RY45_03350 PF13419 Haloacid dehalogenase-like hydrolase RY45_03355 PF00293 NUDIX domain RY45_03360 PF00459 Inositol monophosphatase family RY45_03365 PF03222 Tryptophan/tyrosine permease family RY45_03370 PF01588 Putative tRNA binding domain RY45_03375 PF12833 Helix-turn-helix domain RY45_03375 PF06445 GyrI-like small molecule binding domain RY45_03380 PF01340 Met Apo-repressor, MetJ RY45_03385 PF01053 Cys/Met metabolism PLP-dependent enzyme RY45_03390 PF00696 Amino acid kinase family RY45_03390 PF00742 Homoserine dehydrogenase RY45_03390 PF03447 Homoserine dehydrogenase, NAD binding domain RY45_03395 PF00311 Phosphoenolpyruvate carboxylase RY45_03400 PF01546 Peptidase family M20/M25/M40 RY45_03400 PF07687 Peptidase dimerisation domain RY45_03405 PF01118 Semialdehyde dehydrogenase, NAD binding domain RY45_03405 PF02774 Semialdehyde dehydrogenase, dimerisation domain RY45_03410 PF00696 Amino acid kinase family RY45_03415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RY45_03415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RY45_03420 PF00764 Arginosuccinate synthase RY45_03425 PF00206 Lyase RY45_03425 PF14698 Argininosuccinate lyase C-terminal RY45_03450 PF14602 Hexapeptide repeat of succinyl-transferase RY45_03450 PF12464 Maltose acetyltransferase RY45_03455 PF13194 Domain of unknown function (DUF4010) RY45_03470 PF00528 Binding-protein-dependent transport system inner membrane component RY45_03475 PF00528 Binding-protein-dependent transport system inner membrane component RY45_03480 PF00005 ABC transporter RY45_03480 PF12857 TOBE-like domain RY45_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_03485 PF03466 LysR substrate binding domain RY45_03490 PF18416 N-acetylglucosamine binding protein domain 2 RY45_03490 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RY45_03495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_03495 PF00672 HAMP domain RY45_03495 PF12729 Four helix bundle sensory module for signal transduction RY45_03525 PF14685 Tricorn protease PDZ domain RY45_03525 PF14684 Tricorn protease C1 domain RY45_03525 PF03572 Peptidase family S41 RY45_03525 PF07676 WD40-like Beta Propeller Repeat RY45_03545 PF11230 Protein of unknown function (DUF3029) RY45_03550 PF04055 Radical SAM superfamily RY45_03560 PF03466 LysR substrate binding domain RY45_03560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_03565 PF00155 Aminotransferase class I and II RY45_03570 PF02583 Metal-sensitive transcriptional repressor RY45_03585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RY45_03585 PF11852 Domain of unknown function (DUF3372) RY45_03585 PF03714 Bacterial pullanase-associated domain RY45_03585 PF17967 Pullulanase N2 domain RY45_03585 PF18494 Pullulanase Ins domain RY45_03590 PF00403 Heavy-metal-associated domain RY45_03595 PF08534 Redoxin RY45_03605 PF00270 DEAD/DEAH box helicase RY45_03605 PF00271 Helicase conserved C-terminal domain RY45_03620 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_03625 PF08447 PAS fold RY45_03625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_03640 PF06062 Uncharacterised protein family (UPF0231) RY45_03645 PF05651 Putative sugar diacid recognition RY45_03645 PF17853 GGDEF-like domain RY45_03645 PF13556 PucR C-terminal helix-turn-helix domain RY45_03650 PF02447 GntP family permease RY45_03655 PF02595 Glycerate kinase family RY45_03665 PF00255 Glutathione peroxidase RY45_03670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_03670 PF03466 LysR substrate binding domain RY45_03675 PF07670 Nucleoside recognition RY45_03675 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_03675 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_03680 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RY45_03680 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RY45_03685 PF00472 RF-1 domain RY45_03690 PF00543 Nitrogen regulatory protein P-II RY45_03695 PF13416 Bacterial extracellular solute-binding protein RY45_03705 PF00005 ABC transporter RY45_03705 PF08402 TOBE domain RY45_03710 PF04261 Dyp-type peroxidase family RY45_03715 PF01316 Arginine repressor, DNA binding domain RY45_03715 PF02863 Arginine repressor, C-terminal domain RY45_03720 PF00005 ABC transporter RY45_03725 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_03730 PF00528 Binding-protein-dependent transport system inner membrane component RY45_03735 PF00528 Binding-protein-dependent transport system inner membrane component RY45_03740 PF00056 lactate/malate dehydrogenase, NAD binding domain RY45_03740 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RY45_03750 PF08238 Sel1 repeat RY45_03755 PF00042 Globin RY45_03755 PF00970 Oxidoreductase FAD-binding domain RY45_03755 PF00175 Oxidoreductase NAD-binding domain RY45_03760 PF02082 Transcriptional regulator RY45_03765 PF01595 Cyclin M transmembrane N-terminal domain RY45_03765 PF00571 CBS domain RY45_03765 PF03471 Transporter associated domain RY45_03770 PF01578 Cytochrome C assembly protein RY45_03775 PF02978 Signal peptide binding domain RY45_03775 PF02881 SRP54-type protein, helical bundle domain RY45_03775 PF00448 SRP54-type protein, GTPase domain RY45_03780 PF00886 Ribosomal protein S16 RY45_03785 PF01782 RimM N-terminal domain RY45_03785 PF05239 PRC-barrel domain RY45_03790 PF01746 tRNA (Guanine-1)-methyltransferase RY45_03795 PF01245 Ribosomal protein L19 RY45_03805 PF02976 DNA mismatch repair enzyme MutH RY45_03815 PF00293 NUDIX domain RY45_03820 PF02896 PEP-utilising enzyme, TIM barrel domain RY45_03820 PF05524 PEP-utilising enzyme, N-terminal RY45_03820 PF00391 PEP-utilising enzyme, mobile domain RY45_03820 PF01590 GAF domain RY45_03825 PF01790 Prolipoprotein diacylglyceryl transferase RY45_03830 PF00303 Thymidylate synthase RY45_03835 PF06965 Na+/H+ antiporter 1 RY45_03845 PF03466 LysR substrate binding domain RY45_03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_03850 PF01022 Bacterial regulatory protein, arsR family RY45_03855 PF01649 Ribosomal protein S20 RY45_03860 PF03023 Lipid II flippase MurJ RY45_03865 PF01687 Riboflavin kinase RY45_03865 PF06574 FAD synthetase RY45_03870 PF06827 Zinc finger found in FPG and IleRS RY45_03870 PF00133 tRNA synthetases class I (I, L, M and V) RY45_03870 PF08264 Anticodon-binding domain of tRNA RY45_03875 PF01252 Signal peptidase (SPase) II RY45_03880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_03885 PF02401 LytB protein RY45_03910 PF05567 Neisseria PilC beta-propeller domain RY45_03945 PF00795 Carbon-nitrogen hydrolase RY45_03945 PF02540 NAD synthase RY45_03950 PF00543 Nitrogen regulatory protein P-II RY45_03960 PF02664 S-Ribosylhomocysteinase (LuxS) RY45_03965 PF00990 Diguanylate cyclase, GGDEF domain RY45_03970 PF00575 S1 RNA binding domain RY45_03970 PF00773 RNB domain RY45_03970 PF08206 Ribonuclease B OB domain RY45_03970 PF17876 Cold shock domain RY45_03970 PF08461 Ribonuclease R winged-helix domain RY45_03980 PF00588 SpoU rRNA Methylase family RY45_03980 PF08032 RNA 2'-O ribose methyltransferase substrate binding RY45_03990 PF13673 Acetyltransferase (GNAT) domain RY45_04010 PF01566 Natural resistance-associated macrophage protein RY45_04015 PF01250 Ribosomal protein S6 RY45_04020 PF01084 Ribosomal protein S18 RY45_04025 PF03948 Ribosomal protein L9, C-terminal domain RY45_04025 PF01281 Ribosomal protein L9, N-terminal domain RY45_04030 PF00175 Oxidoreductase NAD-binding domain RY45_04030 PF00970 Oxidoreductase FAD-binding domain RY45_04045 PF16197 Ketoacyl-synthetase C-terminal extension RY45_04045 PF14765 Polyketide synthase dehydratase RY45_04045 PF00550 Phosphopantetheine attachment site RY45_04045 PF08659 KR domain RY45_04045 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_04045 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_04045 PF08990 Erythronolide synthase docking RY45_04045 PF08240 Alcohol dehydrogenase GroES-like domain RY45_04045 PF00698 Acyl transferase domain RY45_04050 PF09335 SNARE associated Golgi protein RY45_04055 PF00675 Insulinase (Peptidase family M16) RY45_04055 PF05193 Peptidase M16 inactive domain RY45_04060 PF04262 Glutamate-cysteine ligase RY45_04070 PF00501 AMP-binding enzyme RY45_04080 PF00583 Acetyltransferase (GNAT) family RY45_04090 PF12592 Protein of unknown function (DUF3763) RY45_04090 PF17868 AAA lid domain RY45_04090 PF07728 AAA domain (dynein-related subfamily) RY45_04095 PF05762 VWA domain containing CoxE-like protein RY45_04100 PF00072 Response regulator receiver domain RY45_04100 PF00990 Diguanylate cyclase, GGDEF domain RY45_04105 PF00009 Elongation factor Tu GTP binding domain RY45_04105 PF16658 Class II release factor RF3, C-terminal domain RY45_04105 PF03144 Elongation factor Tu domain 2 RY45_04125 PF00583 Acetyltransferase (GNAT) family RY45_04130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RY45_04135 PF17754 MftR C-terminal domain RY45_04135 PF00440 Bacterial regulatory proteins, tetR family RY45_04140 PF04480 Protein of unknown function (DUF559) RY45_04145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_04145 PF03466 LysR substrate binding domain RY45_04150 PF04371 Porphyromonas-type peptidyl-arginine deiminase RY45_04155 PF01425 Amidase RY45_04170 PF00753 Metallo-beta-lactamase superfamily RY45_04185 PF00270 DEAD/DEAH box helicase RY45_04185 PF00271 Helicase conserved C-terminal domain RY45_04190 PF05643 Putative bacterial lipoprotein (DUF799) RY45_04200 PF03783 Curli production assembly/transport component CsgG RY45_04205 PF03466 LysR substrate binding domain RY45_04205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_04220 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase RY45_04225 PF03150 Di-haem cytochrome c peroxidase RY45_04240 PF00445 Ribonuclease T2 family RY45_04250 PF03060 Nitronate monooxygenase RY45_04285 PF00293 NUDIX domain RY45_04285 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RY45_04285 PF09297 NADH pyrophosphatase zinc ribbon domain RY45_04290 PF16527 Two-component sensor protein CpxA, periplasmic domain RY45_04290 PF00672 HAMP domain RY45_04290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_04290 PF00512 His Kinase A (phospho-acceptor) domain RY45_04295 PF00072 Response regulator receiver domain RY45_04295 PF00486 Transcriptional regulatory protein, C terminal RY45_04300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_04305 PF12704 MacB-like periplasmic core domain RY45_04305 PF00005 ABC transporter RY45_04305 PF02687 FtsX-like permease family RY45_04310 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_04315 PF00005 ABC transporter RY45_04320 PF00528 Binding-protein-dependent transport system inner membrane component RY45_04325 PF00528 Binding-protein-dependent transport system inner membrane component RY45_04330 PF00291 Pyridoxal-phosphate dependent enzyme RY45_04335 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RY45_04335 PF00326 Prolyl oligopeptidase family RY45_04355 PF08335 GlnD PII-uridylyltransferase RY45_04355 PF03710 Glutamate-ammonia ligase adenylyltransferase RY45_04365 PF00672 HAMP domain RY45_04365 PF02743 Cache domain RY45_04365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_04370 PF00520 Ion transport protein RY45_04370 PF00027 Cyclic nucleotide-binding domain RY45_04375 PF08239 Bacterial SH3 domain RY45_04380 PF00171 Aldehyde dehydrogenase family RY45_04380 PF01619 Proline dehydrogenase RY45_04380 PF14850 DNA-binding domain of Proline dehydrogenase RY45_04380 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RY45_04385 PF00293 NUDIX domain RY45_04385 PF09297 NADH pyrophosphatase zinc ribbon domain RY45_04395 PF00480 ROK family RY45_04400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RY45_04400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_04405 PF00162 Phosphoglycerate kinase RY45_04410 PF01116 Fructose-bisphosphate aldolase class-II RY45_04425 PF02683 Cytochrome C biogenesis protein transmembrane region RY45_04425 PF11412 Disulphide bond corrector protein DsbC RY45_04430 PF03091 CutA1 divalent ion tolerance protein RY45_04445 PF03466 LysR substrate binding domain RY45_04445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_04450 PF01571 Aminomethyltransferase folate-binding domain RY45_04455 PF03937 Flavinator of succinate dehydrogenase RY45_04465 PF02910 Fumarate reductase flavoprotein C-term RY45_04465 PF00890 FAD binding domain RY45_04470 PF04542 Sigma-70 region 2 RY45_04470 PF08281 Sigma-70, region 4 RY45_04475 PF03873 Anti sigma-E protein RseA, C-terminal domain RY45_04475 PF03872 Anti sigma-E protein RseA, N-terminal domain RY45_04480 PF03888 MucB/RseB N-terminal domain RY45_04480 PF17188 MucB/RseB C-terminal domain RY45_04490 PF00679 Elongation factor G C-terminus RY45_04490 PF06421 GTP-binding protein LepA C-terminus RY45_04490 PF03144 Elongation factor Tu domain 2 RY45_04490 PF00009 Elongation factor Tu GTP binding domain RY45_04495 PF10502 Signal peptidase, peptidase S26 RY45_04500 PF00035 Double-stranded RNA binding motif RY45_04500 PF14622 Ribonuclease-III-like RY45_04505 PF01926 50S ribosome-binding GTPase RY45_04505 PF07650 KH domain RY45_04510 PF02565 Recombination protein O C terminal RY45_04510 PF11967 Recombination protein O N terminal RY45_04515 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RY45_04525 PF01116 Fructose-bisphosphate aldolase class-II RY45_04530 PF01979 Amidohydrolase family RY45_04535 PF03610 PTS system fructose IIA component RY45_04540 PF03613 PTS system mannose/fructose/sorbose family IID component RY45_04545 PF03609 PTS system sorbose-specific iic component RY45_04550 PF03830 PTS system sorbose subfamily IIB component RY45_04555 PF01380 SIS domain RY45_04560 PF08013 Tagatose 6 phosphate kinase RY45_04565 PF08220 DeoR-like helix-turn-helix domain RY45_04565 PF00455 DeoR C terminal sensor domain RY45_04570 PF01510 N-acetylmuramoyl-L-alanine amidase RY45_04575 PF07308 Protein of unknown function (DUF1456) RY45_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_04580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RY45_04580 PF00072 Response regulator receiver domain RY45_04580 PF01627 Hpt domain RY45_04580 PF00512 His Kinase A (phospho-acceptor) domain RY45_04580 PF00672 HAMP domain RY45_04585 PF05958 tRNA (Uracil-5-)-methyltransferase RY45_04585 PF01938 TRAM domain RY45_04590 PF13291 ACT domain RY45_04590 PF02824 TGS domain RY45_04590 PF04607 Region found in RelA / SpoT proteins RY45_04595 PF03819 MazG nucleotide pyrophosphohydrolase domain RY45_04600 PF00117 Glutamine amidotransferase class-I RY45_04600 PF06418 CTP synthase N-terminus RY45_04605 PF00113 Enolase, C-terminal TIM barrel domain RY45_04605 PF03952 Enolase, N-terminal domain RY45_04610 PF04977 Septum formation initiator RY45_04615 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RY45_04620 PF02542 YgbB family RY45_04625 PF01142 tRNA pseudouridine synthase D (TruD) RY45_04630 PF01975 Survival protein SurE RY45_04640 PF09335 SNARE associated Golgi protein RY45_04645 PF01476 LysM domain RY45_04645 PF01551 Peptidase family M23 RY45_04650 PF04545 Sigma-70, region 4 RY45_04650 PF04539 Sigma-70 region 3 RY45_04650 PF04542 Sigma-70 region 2 RY45_04650 PF00140 Sigma-70 factor, region 1.2 RY45_04655 PF00814 Glycoprotease family RY45_04660 PF09424 Yqey-like protein RY45_04665 PF10410 DnaB-helicase binding domain of primase RY45_04665 PF01807 CHC2 zinc finger RY45_04665 PF08275 DNA primase catalytic core, N-terminal domain RY45_04665 PF08278 DNA primase DnaG DnaB-binding RY45_04670 PF04545 Sigma-70, region 4 RY45_04670 PF04539 Sigma-70 region 3 RY45_04670 PF04542 Sigma-70 region 2 RY45_04670 PF04546 Sigma-70, non-essential region RY45_04670 PF03979 Sigma-70 factor, region 1.1 RY45_04670 PF00140 Sigma-70 factor, region 1.2 RY45_04685 PF00128 Alpha amylase, catalytic domain RY45_04700 PF02843 Phosphoribosylglycinamide synthetase, C domain RY45_04700 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RY45_04700 PF02844 Phosphoribosylglycinamide synthetase, N domain RY45_04705 PF02142 MGS-like domain RY45_04705 PF01808 AICARFT/IMPCHase bienzyme RY45_04710 PF13411 MerR HTH family regulatory protein RY45_04715 PF01872 RibD C-terminal domain RY45_04720 PF03889 Alternative ribosome-rescue factor A RY45_04725 PF06969 HemN C-terminal domain RY45_04725 PF04055 Radical SAM superfamily RY45_04730 PF01725 Ham1 family RY45_04735 PF07690 Major Facilitator Superfamily RY45_04740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RY45_04740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RY45_04750 PF13302 Acetyltransferase (GNAT) domain RY45_04755 PF13302 Acetyltransferase (GNAT) domain RY45_04760 PF01447 Thermolysin metallopeptidase, catalytic domain RY45_04760 PF03413 Peptidase propeptide and YPEB domain RY45_04760 PF02868 Thermolysin metallopeptidase, alpha-helical domain RY45_04760 PF04151 Bacterial pre-peptidase C-terminal domain RY45_04760 PF07504 Fungalysin/Thermolysin Propeptide Motif RY45_04765 PF03466 LysR substrate binding domain RY45_04765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_04770 PF07690 Major Facilitator Superfamily RY45_04775 PF00267 Gram-negative porin RY45_04780 PF03605 Anaerobic c4-dicarboxylate membrane transporter RY45_04785 PF00206 Lyase RY45_04785 PF10415 Fumarase C C-terminus RY45_04790 PF04186 FxsA cytoplasmic membrane protein RY45_04795 PF01554 MatE RY45_04800 PF00166 Chaperonin 10 Kd subunit RY45_04805 PF00118 TCP-1/cpn60 chaperonin family RY45_04815 PF00990 Diguanylate cyclase, GGDEF domain RY45_04815 PF03707 Bacterial signalling protein N terminal repeat RY45_04815 PF13188 PAS domain RY45_04815 PF00563 EAL domain RY45_04820 PF00849 RNA pseudouridylate synthase RY45_04825 PF18339 RapA N-terminal Tudor like domain 1 RY45_04825 PF00176 SNF2 family N-terminal domain RY45_04825 PF00271 Helicase conserved C-terminal domain RY45_04825 PF12137 RNA polymerase recycling family C-terminal RY45_04825 PF18337 RapA N-terminal Tudor like domain RY45_04860 PF00317 Ribonucleotide reductase, all-alpha domain RY45_04860 PF02867 Ribonucleotide reductase, barrel domain RY45_04860 PF08343 Ribonucleotide reductase N-terminal RY45_04870 PF02562 PhoH-like protein RY45_04870 PF13638 PIN domain RY45_04875 PF00005 ABC transporter RY45_04880 PF00528 Binding-protein-dependent transport system inner membrane component RY45_04900 PF00694 Aconitase C-terminal domain RY45_04905 PF00330 Aconitase family (aconitate hydratase) RY45_04910 PF00180 Isocitrate/isopropylmalate dehydrogenase RY45_04915 PF08502 LeuA allosteric (dimerisation) domain RY45_04915 PF00682 HMGL-like RY45_04925 PF01569 PAP2 superfamily RY45_04930 PF03033 Glycosyltransferase family 28 N-terminal domain RY45_04930 PF04101 Glycosyltransferase family 28 C-terminal domain RY45_04935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RY45_04935 PF00205 Thiamine pyrophosphate enzyme, central domain RY45_04935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_04940 PF10369 Small subunit of acetolactate synthase RY45_04945 PF01515 Phosphate acetyl/butaryl transferase RY45_04945 PF07085 DRTGG domain RY45_04950 PF00871 Acetokinase family RY45_04955 PF04217 Protein of unknown function, DUF412 RY45_04960 PF03887 YfbU domain RY45_04965 PF00578 AhpC/TSA family RY45_04970 PF01842 ACT domain RY45_04975 PF00701 Dihydrodipicolinate synthetase family RY45_04980 PF06804 NlpB/DapX lipoprotein RY45_04985 PF01259 SAICAR synthetase RY45_04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_04995 PF03466 LysR substrate binding domain RY45_05000 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) RY45_05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_05020 PF00989 PAS fold RY45_05020 PF01627 Hpt domain RY45_05020 PF00072 Response regulator receiver domain RY45_05020 PF18415 Histidine kinase receptor ArcB trans-membrane domain RY45_05020 PF00512 His Kinase A (phospho-acceptor) domain RY45_05025 PF01966 HD domain RY45_05025 PF13286 Phosphohydrolase-associated domain RY45_05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_05035 PF00512 His Kinase A (phospho-acceptor) domain RY45_05035 PF09456 RcsC Alpha-Beta-Loop (ABL) RY45_05035 PF00072 Response regulator receiver domain RY45_05040 PF03707 Bacterial signalling protein N terminal repeat RY45_05040 PF00563 EAL domain RY45_05040 PF00990 Diguanylate cyclase, GGDEF domain RY45_05045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05045 PF00672 HAMP domain RY45_05045 PF12729 Four helix bundle sensory module for signal transduction RY45_05050 PF02357 Transcription termination factor nusG RY45_05055 PF03180 NLPA lipoprotein RY45_05060 PF00528 Binding-protein-dependent transport system inner membrane component RY45_05065 PF09383 NIL domain RY45_05065 PF00005 ABC transporter RY45_05080 PF00480 ROK family RY45_05085 PF08331 Domain of unknown function (DUF1730) RY45_05090 PF03853 YjeF-related protein N-terminus RY45_05090 PF01256 Carbohydrate kinase RY45_05095 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RY45_05100 PF01520 N-acetylmuramoyl-L-alanine amidase RY45_05105 PF01119 DNA mismatch repair protein, C-terminal domain RY45_05105 PF08676 MutL C terminal dimerisation domain RY45_05115 PF17209 Hfq protein RY45_05120 PF01926 50S ribosome-binding GTPase RY45_05120 PF16360 GTP-binding GTPase Middle Region RY45_05120 PF13167 GTP-binding GTPase N-terminal RY45_05125 PF12221 Bacterial membrane protein N terminal RY45_05125 PF01145 SPFH domain / Band 7 family RY45_05130 PF01145 SPFH domain / Band 7 family RY45_05135 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) RY45_05140 PF00348 Polyprenyl synthetase RY45_05150 PF01016 Ribosomal L27 protein RY45_05155 PF01018 GTP1/OBG RY45_05155 PF01926 50S ribosome-binding GTPase RY45_05165 PF13193 AMP-binding enzyme C-terminal domain RY45_05165 PF00501 AMP-binding enzyme RY45_05185 PF00296 Luciferase-like monooxygenase RY45_05200 PF00149 Calcineurin-like phosphoesterase RY45_05205 PF04379 ApaG domain RY45_05210 PF00398 Ribosomal RNA adenine dimethylase RY45_05215 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RY45_05220 PF09312 SurA N-terminal domain RY45_05220 PF00639 PPIC-type PPIASE domain RY45_05225 PF03968 OstA-like protein RY45_05225 PF04453 LPS transport system D RY45_05230 PF01636 Phosphotransferase enzyme family RY45_05235 PF00483 Nucleotidyl transferase RY45_05240 PF05099 Tellurite resistance protein TerB RY45_05240 PF00226 DnaJ domain RY45_05245 PF00860 Permease family RY45_05255 PF00005 ABC transporter RY45_05255 PF12848 ABC transporter RY45_05270 PF01048 Phosphorylase superfamily RY45_05275 PF01464 Transglycosylase SLT domain RY45_05290 PF03466 LysR substrate binding domain RY45_05290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_05295 PF01048 Phosphorylase superfamily RY45_05300 PF07670 Nucleoside recognition RY45_05300 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_05300 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_05305 PF01791 DeoC/LacD family aldolase RY45_05315 PF01370 NAD dependent epimerase/dehydratase family RY45_05325 PF00005 ABC transporter RY45_05330 PF01032 FecCD transport family RY45_05340 PF06228 Haem utilisation ChuX/HutX RY45_05345 PF01243 Pyridoxamine 5'-phosphate oxidase RY45_05365 PF00593 TonB dependent receptor RY45_05365 PF07715 TonB-dependent Receptor Plug Domain RY45_05370 PF12832 MFS_1 like family RY45_05375 PF13443 Cro/C1-type HTH DNA-binding domain RY45_05385 PF00989 PAS fold RY45_05385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_05385 PF00512 His Kinase A (phospho-acceptor) domain RY45_05390 PF00704 Glycosyl hydrolases family 18 RY45_05390 PF08329 Chitinase A, N-terminal domain RY45_05395 PF17945 Beta/Gamma crystallin RY45_05395 PF12561 ToxR activated gene A lipoprotein domain RY45_05400 PF18416 N-acetylglucosamine binding protein domain 2 RY45_05400 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RY45_05405 PF13847 Methyltransferase domain RY45_05410 PF00027 Cyclic nucleotide-binding domain RY45_05410 PF13545 Crp-like helix-turn-helix domain RY45_05415 PF02566 OsmC-like protein RY45_05430 PF00485 Phosphoribulokinase / Uridine kinase family RY45_05435 PF00893 Small Multidrug Resistance protein RY45_05440 PF00892 EamA-like transporter family RY45_05445 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RY45_05450 PF01522 Polysaccharide deacetylase RY45_05455 PF01370 NAD dependent epimerase/dehydratase family RY45_05455 PF02911 Formyl transferase, C-terminal domain RY45_05455 PF00551 Formyl transferase RY45_05460 PF00535 Glycosyl transferase family 2 RY45_05465 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RY45_05470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RY45_05470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RY45_05470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RY45_05475 PF06794 Uncharacterised protein family (UPF0270) RY45_05480 PF00360 Phytochrome region RY45_05480 PF00990 Diguanylate cyclase, GGDEF domain RY45_05480 PF01590 GAF domain RY45_05480 PF00563 EAL domain RY45_05485 PF00561 alpha/beta hydrolase fold RY45_05490 PF01584 CheW-like domain RY45_05490 PF00072 Response regulator receiver domain RY45_05500 PF09526 Probable metal-binding protein (DUF2387) RY45_05505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_05510 PF04102 SlyX RY45_05520 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RY45_05520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_05525 PF00072 Response regulator receiver domain RY45_05525 PF02954 Bacterial regulatory protein, Fis family RY45_05525 PF00158 Sigma-54 interaction domain RY45_05545 PF02872 5'-nucleotidase, C-terminal domain RY45_05545 PF00149 Calcineurin-like phosphoesterase RY45_05550 PF12792 CSS motif domain associated with EAL RY45_05550 PF00563 EAL domain RY45_05560 PF00772 DnaB-like helicase N terminal domain RY45_05560 PF03796 DnaB-like helicase C terminal domain RY45_05565 PF00842 Alanine racemase, C-terminal domain RY45_05565 PF01168 Alanine racemase, N-terminal domain RY45_05570 PF12838 4Fe-4S dicluster domain RY45_05580 PF00989 PAS fold RY45_05580 PF01590 GAF domain RY45_05580 PF00563 EAL domain RY45_05580 PF00990 Diguanylate cyclase, GGDEF domain RY45_05595 PF15976 CS1-pili formation C-terminal RY45_05595 PF16967 E-set like domain RY45_05600 PF00196 Bacterial regulatory proteins, luxR family RY45_05600 PF00072 Response regulator receiver domain RY45_05605 PF00672 HAMP domain RY45_05605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_05605 PF00512 His Kinase A (phospho-acceptor) domain RY45_05605 PF01627 Hpt domain RY45_05605 PF00072 Response regulator receiver domain RY45_05605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RY45_05630 PF00266 Aminotransferase class-V RY45_05635 PF01339 CheB methylesterase RY45_05635 PF00072 Response regulator receiver domain RY45_05640 PF03975 CheD chemotactic sensory transduction RY45_05645 PF01739 CheR methyltransferase, SAM binding domain RY45_05645 PF03705 CheR methyltransferase, all-alpha domain RY45_05650 PF00672 HAMP domain RY45_05650 PF02203 Tar ligand binding domain homologue RY45_05650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05655 PF01584 CheW-like domain RY45_05660 PF12729 Four helix bundle sensory module for signal transduction RY45_05660 PF00672 HAMP domain RY45_05660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05665 PF01584 CheW-like domain RY45_05665 PF02895 Signal transducing histidine kinase, homodimeric domain RY45_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_05665 PF01627 Hpt domain RY45_05665 PF07194 P2 response regulator binding domain RY45_05675 PF00072 Response regulator receiver domain RY45_05680 PF00672 HAMP domain RY45_05680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05680 PF02743 Cache domain RY45_05690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_05690 PF03466 LysR substrate binding domain RY45_05695 PF01810 LysE type translocator RY45_05700 PF12392 Collagenase RY45_05700 PF01136 Peptidase family U32 RY45_05710 PF06906 Protein of unknown function (DUF1272) RY45_05720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RY45_05720 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RY45_05725 PF12833 Helix-turn-helix domain RY45_05725 PF02805 Metal binding domain of Ada RY45_05725 PF06029 AlkA N-terminal domain RY45_05725 PF00730 HhH-GPD superfamily base excision DNA repair protein RY45_05735 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RY45_05755 PF00106 short chain dehydrogenase RY45_05760 PF03573 outer membrane porin, OprD family RY45_05765 PF00672 HAMP domain RY45_05765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05765 PF02743 Cache domain RY45_05775 PF00596 Class II Aldolase and Adducin N-terminal domain RY45_05780 PF00465 Iron-containing alcohol dehydrogenase RY45_05795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RY45_05795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RY45_05800 PF06134 L-rhamnose isomerase (RhaA) RY45_05805 PF06379 L-rhamnose-proton symport protein (RhaT) RY45_05810 PF05336 L-rhamnose mutarotase RY45_05835 PF00800 Prephenate dehydratase RY45_05835 PF01817 Chorismate mutase type II RY45_05865 PF08349 Protein of unknown function (DUF1722) RY45_05870 PF13411 MerR HTH family regulatory protein RY45_05875 PF00875 DNA photolyase RY45_05875 PF03441 FAD binding domain of DNA photolyase RY45_05885 PF00106 short chain dehydrogenase RY45_05925 PF00210 Ferritin-like domain RY45_05930 PF03063 Prismane/CO dehydrogenase family RY45_05935 PF00970 Oxidoreductase FAD-binding domain RY45_05935 PF00175 Oxidoreductase NAD-binding domain RY45_05935 PF00042 Globin RY45_05940 PF16363 GDP-mannose 4,6 dehydratase RY45_05945 PF06965 Na+/H+ antiporter 1 RY45_05945 PF13462 Thioredoxin RY45_05955 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RY45_05955 PF17287 POTRA domain RY45_05955 PF08479 POTRA domain, ShlB-type RY45_05960 PF05860 haemagglutination activity domain RY45_05960 PF13332 Hemagglutinin repeat RY45_05960 PF05594 Haemagluttinin repeat RY45_05960 PF14436 Bacterial EndoU nuclease RY45_05960 PF04829 Pre-toxin domain with VENN motif RY45_05970 PF05860 haemagglutination activity domain RY45_05970 PF05594 Haemagluttinin repeat RY45_05970 PF13332 Hemagglutinin repeat RY45_05970 PF15526 Novel toxin 21 RY45_05970 PF04829 Pre-toxin domain with VENN motif RY45_06005 PF00196 Bacterial regulatory proteins, luxR family RY45_06005 PF03472 Autoinducer binding domain RY45_06010 PF05638 Type VI secretion system effector, Hcp RY45_06015 PF04717 Type VI secretion system, phage-baseplate injector RY45_06040 PF03466 LysR substrate binding domain RY45_06040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_06045 PF03306 Alpha-acetolactate decarboxylase RY45_06050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_06050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RY45_06050 PF00205 Thiamine pyrophosphate enzyme, central domain RY45_06055 PF01965 DJ-1/PfpI family RY45_06060 PF02558 Ketopantoate reductase PanE/ApbA RY45_06060 PF08546 Ketopantoate reductase PanE/ApbA C terminal RY45_06065 PF04461 Protein of unknown function (DUF520) RY45_06070 PF03502 Nucleoside-specific channel-forming protein, Tsx RY45_06075 PF07690 Major Facilitator Superfamily RY45_06085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RY45_06095 PF05175 Methyltransferase small domain RY45_06100 PF01722 BolA-like protein RY45_06105 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RY45_06105 PF11973 NQRA C-terminal domain RY45_06110 PF03116 NQR2, RnfD, RnfE family RY45_06115 PF04205 FMN-binding domain RY45_06120 PF02508 Rnf-Nqr subunit, membrane protein RY45_06125 PF02508 Rnf-Nqr subunit, membrane protein RY45_06130 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_06130 PF00970 Oxidoreductase FAD-binding domain RY45_06130 PF00175 Oxidoreductase NAD-binding domain RY45_06135 PF02424 ApbE family RY45_06150 PF11798 IMS family HHH motif RY45_06150 PF00817 impB/mucB/samB family RY45_06150 PF11799 impB/mucB/samB family C-terminal domain RY45_06155 PF00672 HAMP domain RY45_06155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_06160 PF03466 LysR substrate binding domain RY45_06160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_06170 PF04241 Protein of unknown function (DUF423) RY45_06175 PF01728 FtsJ-like methyltransferase RY45_06175 PF18125 RlmM ferredoxin-like domain RY45_06185 PF18324 Hypothetical protein TT1725 RY45_06185 PF00180 Isocitrate/isopropylmalate dehydrogenase RY45_06190 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RY45_06190 PF01367 5'-3' exonuclease, C-terminal SAM fold RY45_06195 PF03641 Possible lysine decarboxylase RY45_06195 PF11892 Domain of unknown function (DUF3412) RY45_06195 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases RY45_06200 PF07694 5TMR of 5TMR-LYT RY45_06200 PF00990 Diguanylate cyclase, GGDEF domain RY45_06210 PF14489 QueF-like protein RY45_06210 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RY45_06215 PF07348 Syd protein (SUKH-2) RY45_06220 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) RY45_06245 PF04287 tRNA pseudouridine synthase C RY45_06250 PF00849 RNA pseudouridylate synthase RY45_06255 PF00258 Flavodoxin RY45_06260 PF02264 LamB porin RY45_06265 PF07148 Maltose operon periplasmic protein precursor (MalM) RY45_06270 PF02378 Phosphotransferase system, EIIC RY45_06270 PF00367 phosphotransferase system, EIIB RY45_06275 PF11944 Protein of unknown function (DUF3461) RY45_06280 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RY45_06280 PF14602 Hexapeptide repeat of succinyl-transferase RY45_06280 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_06285 PF01842 ACT domain RY45_06285 PF01909 Nucleotidyltransferase domain RY45_06285 PF01966 HD domain RY45_06285 PF08335 GlnD PII-uridylyltransferase RY45_06290 PF00557 Metallopeptidase family M24 RY45_06295 PF00318 Ribosomal protein S2 RY45_06300 PF00889 Elongation factor TS RY45_06305 PF00696 Amino acid kinase family RY45_06310 PF01765 Ribosome recycling factor RY45_06315 PF01255 Putative undecaprenyl diphosphate synthase RY45_06325 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RY45_06325 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RY45_06325 PF13288 DXP reductoisomerase C-terminal domain RY45_06330 PF02163 Peptidase family M50 RY45_06330 PF17820 PDZ domain RY45_06335 PF07244 Surface antigen variable number repeat RY45_06335 PF01103 Surface antigen RY45_06340 PF03938 Outer membrane protein (OmpH-like) RY45_06345 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RY45_06345 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_06350 PF07977 FabA-like domain RY45_06355 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_06355 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RY45_06360 PF02684 Lipid-A-disaccharide synthetase RY45_06365 PF01351 Ribonuclease HII RY45_06370 PF02811 PHP domain RY45_06370 PF01336 OB-fold nucleic acid binding domain RY45_06370 PF07733 Bacterial DNA polymerase III alpha NTPase domain RY45_06370 PF14579 Helix-hairpin-helix motif RY45_06370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RY45_06375 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RY45_06380 PF18500 CadC C-terminal domain 1 RY45_06380 PF00486 Transcriptional regulatory protein, C terminal RY45_06385 PF13520 Amino acid permease RY45_06390 PF01276 Orn/Lys/Arg decarboxylase, major domain RY45_06390 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RY45_06390 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RY45_06395 PF08543 Phosphomethylpyrimidine kinase RY45_06405 PF03466 LysR substrate binding domain RY45_06405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_06415 PF12706 Beta-lactamase superfamily domain RY45_06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_06420 PF03466 LysR substrate binding domain RY45_06425 PF12146 Serine aminopeptidase, S33 RY45_06430 PF12146 Serine aminopeptidase, S33 RY45_06435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_06435 PF03466 LysR substrate binding domain RY45_06440 PF13520 Amino acid permease RY45_06445 PF13302 Acetyltransferase (GNAT) domain RY45_06460 PF05649 Peptidase family M13 RY45_06460 PF01431 Peptidase family M13 RY45_06465 PF11734 TilS substrate C-terminal domain RY45_06465 PF01171 PP-loop family RY45_06465 PF09179 TilS substrate binding domain RY45_06470 PF00990 Diguanylate cyclase, GGDEF domain RY45_06495 PF00072 Response regulator receiver domain RY45_06495 PF00196 Bacterial regulatory proteins, luxR family RY45_06505 PF00128 Alpha amylase, catalytic domain RY45_06520 PF00535 Glycosyl transferase family 2 RY45_06535 PF01471 Putative peptidoglycan binding domain RY45_06535 PF03734 L,D-transpeptidase catalytic domain RY45_06540 PF05951 Bacterial protein of unknown function (DUF882) RY45_06550 PF03458 UPF0126 domain RY45_06565 PF04354 ZipA, C-terminal FtsZ-binding domain RY45_06570 PF00533 BRCA1 C Terminus (BRCT) domain RY45_06570 PF01653 NAD-dependent DNA ligase adenylation domain RY45_06570 PF03120 NAD-dependent DNA ligase OB-fold domain RY45_06570 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RY45_06570 PF12826 Helix-hairpin-helix motif RY45_06580 PF13597 Anaerobic ribonucleoside-triphosphate reductase RY45_06580 PF03477 ATP cone domain RY45_06590 PF01679 Proteolipid membrane potential modulator RY45_06615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_06615 PF00529 HlyD membrane-fusion protein of T1SS RY45_06620 PF01047 MarR family RY45_06625 PF03390 2-hydroxycarboxylate transporter family RY45_06630 PF00390 Malic enzyme, N-terminal domain RY45_06630 PF03949 Malic enzyme, NAD binding domain RY45_06635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_06635 PF17203 Single cache domain 3 RY45_06635 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RY45_06635 PF00989 PAS fold RY45_06640 PF12431 Transcriptional regulator RY45_06640 PF00072 Response regulator receiver domain RY45_06645 PF00892 EamA-like transporter family RY45_06655 PF00171 Aldehyde dehydrogenase family RY45_06660 PF00158 Sigma-54 interaction domain RY45_06660 PF02954 Bacterial regulatory protein, Fis family RY45_06660 PF01590 GAF domain RY45_06665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_06665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_06665 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_06670 PF02515 CoA-transferase family III RY45_06675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_06680 PF00486 Transcriptional regulatory protein, C terminal RY45_06680 PF00072 Response regulator receiver domain RY45_06685 PF11808 Phosphate regulon sensor protein PhoR RY45_06685 PF00989 PAS fold RY45_06685 PF00512 His Kinase A (phospho-acceptor) domain RY45_06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_06690 PF12849 PBP superfamily domain RY45_06695 PF01435 Peptidase family M48 RY45_06705 PF00480 ROK family RY45_06710 PF03932 CutC family RY45_06720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_06720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RY45_06725 PF00005 ABC transporter RY45_06740 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_06745 PF00528 Binding-protein-dependent transport system inner membrane component RY45_06750 PF00528 Binding-protein-dependent transport system inner membrane component RY45_06755 PF00005 ABC transporter RY45_06765 PF00293 NUDIX domain RY45_06775 PF08534 Redoxin RY45_06780 PF01699 Sodium/calcium exchanger protein RY45_06785 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RY45_06785 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RY45_06790 PF01235 Sodium:alanine symporter family RY45_06795 PF08479 POTRA domain, ShlB-type RY45_06795 PF17287 POTRA domain RY45_06795 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RY45_06805 PF05594 Haemagluttinin repeat RY45_06805 PF13332 Hemagglutinin repeat RY45_06805 PF15526 Novel toxin 21 RY45_06805 PF04829 Pre-toxin domain with VENN motif RY45_06805 PF05860 haemagglutination activity domain RY45_06820 PF00860 Permease family RY45_06825 PF00072 Response regulator receiver domain RY45_06825 PF00990 Diguanylate cyclase, GGDEF domain RY45_06830 PF10692 Protein of unknown function (DUF2498) RY45_06835 PF01554 MatE RY45_06840 PF12833 Helix-turn-helix domain RY45_06845 PF03949 Malic enzyme, NAD binding domain RY45_06845 PF00390 Malic enzyme, N-terminal domain RY45_06850 PF01389 OmpA-like transmembrane domain RY45_06850 PF00691 OmpA family RY45_06855 PF00691 OmpA family RY45_06855 PF01389 OmpA-like transmembrane domain RY45_06860 PF01389 OmpA-like transmembrane domain RY45_06860 PF00691 OmpA family RY45_06875 PF00209 Sodium:neurotransmitter symporter family RY45_06880 PF01734 Patatin-like phospholipase RY45_06885 PF00990 Diguanylate cyclase, GGDEF domain RY45_06890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_06890 PF00529 HlyD membrane-fusion protein of T1SS RY45_06895 PF00873 AcrB/AcrD/AcrF family RY45_06905 PF08497 Radical SAM N-terminal RY45_06905 PF04055 Radical SAM superfamily RY45_06905 PF11842 Domain of unknown function (DUF3362) RY45_06925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RY45_06935 PF02075 Crossover junction endodeoxyribonuclease RuvC RY45_06940 PF00230 Major intrinsic protein RY45_06945 PF10145 Phage-related minor tail protein RY45_06945 PF01551 Peptidase family M23 RY45_06945 PF01464 Transglycosylase SLT domain RY45_06950 PF00128 Alpha amylase, catalytic domain RY45_06955 PF01551 Peptidase family M23 RY45_06970 PF13396 Phospholipase_D-nuclease N-terminal RY45_06970 PF13091 PLD-like domain RY45_06980 PF00551 Formyl transferase RY45_06980 PF01842 ACT domain RY45_06985 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RY45_06995 PF00085 Thioredoxin RY45_07000 PF01648 4'-phosphopantetheinyl transferase superfamily RY45_07005 PF00877 NlpC/P60 family RY45_07010 PF05971 RNA methyltransferase RY45_07025 PF17969 L,D-transpeptidase C-terminal domain RY45_07025 PF01476 LysM domain RY45_07025 PF03734 L,D-transpeptidase catalytic domain RY45_07035 PF03466 LysR substrate binding domain RY45_07035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_07040 PF02634 FdhD/NarQ family RY45_07045 PF00384 Molybdopterin oxidoreductase RY45_07060 PF02342 TerD domain RY45_07095 PF00005 ABC transporter RY45_07105 PF03781 Sulfatase-modifying factor enzyme 1 RY45_07115 PF13276 HTH-like domain RY45_07115 PF13333 Integrase core domain RY45_07115 PF00665 Integrase core domain RY45_07130 PF00440 Bacterial regulatory proteins, tetR family RY45_07135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_07135 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_07135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_07135 PF09317 Domain of unknown function (DUF1974) RY45_07140 PF00873 AcrB/AcrD/AcrF family RY45_07150 PF00224 Pyruvate kinase, barrel domain RY45_07150 PF02887 Pyruvate kinase, alpha/beta domain RY45_07155 PF01380 SIS domain RY45_07155 PF01418 Helix-turn-helix domain, rpiR family RY45_07160 PF02685 Glucokinase RY45_07170 PF00072 Response regulator receiver domain RY45_07170 PF00486 Transcriptional regulatory protein, C terminal RY45_07175 PF18693 TRAM domain RY45_07175 PF00919 Uncharacterized protein family UPF0004 RY45_07175 PF04055 Radical SAM superfamily RY45_07180 PF00072 Response regulator receiver domain RY45_07190 PF02049 Flagellar hook-basal body complex protein FliE RY45_07195 PF01514 Secretory protein of YscJ/FliF family RY45_07195 PF08345 Flagellar M-ring protein C-terminal RY45_07200 PF14841 FliG middle domain RY45_07200 PF01706 FliG C-terminal domain RY45_07200 PF14842 FliG N-terminal domain RY45_07210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_07210 PF18269 T3SS EscN ATPase C-terminal domain RY45_07230 PF02154 Flagellar motor switch protein FliM RY45_07230 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RY45_07235 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RY45_07240 PF04347 Flagellar biosynthesis protein, FliO RY45_07245 PF00813 FliP family RY45_07250 PF01313 Bacterial export proteins, family 3 RY45_07255 PF01311 Bacterial export proteins, family 1 RY45_07260 PF01312 FlhB HrpN YscU SpaS Family RY45_07265 PF00771 FHIPEP family RY45_07270 PF00448 SRP54-type protein, GTPase domain RY45_07275 PF10609 NUBPL iron-transfer P-loop NTPase RY45_07280 PF04545 Sigma-70, region 4 RY45_07280 PF04539 Sigma-70 region 3 RY45_07280 PF04542 Sigma-70 region 2 RY45_07285 PF00072 Response regulator receiver domain RY45_07290 PF04344 Chemotaxis phosphatase, CheZ RY45_07295 PF01584 CheW-like domain RY45_07295 PF02895 Signal transducing histidine kinase, homodimeric domain RY45_07295 PF07194 P2 response regulator binding domain RY45_07295 PF01627 Hpt domain RY45_07295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_07300 PF00072 Response regulator receiver domain RY45_07300 PF01339 CheB methylesterase RY45_07305 PF01618 MotA/TolQ/ExbB proton channel family RY45_07310 PF13677 Membrane MotB of proton-channel complex MotA/MotB RY45_07310 PF00691 OmpA family RY45_07315 PF13614 AAA domain RY45_07325 PF01584 CheW-like domain RY45_07335 PF00005 ABC transporter RY45_07340 PF03379 CcmB protein RY45_07345 PF01578 Cytochrome C assembly protein RY45_07350 PF04995 Heme exporter protein D (CcmD) RY45_07355 PF03100 CcmE RY45_07360 PF01578 Cytochrome C assembly protein RY45_07360 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RY45_07365 PF08534 Redoxin RY45_07370 PF03918 Cytochrome C biogenesis protein RY45_07375 PF03918 Cytochrome C biogenesis protein RY45_07380 PF04333 MlaA lipoprotein RY45_07385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RY45_07385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RY45_07390 PF00462 Glutaredoxin RY45_07395 PF01189 16S rRNA methyltransferase RsmB/F RY45_07395 PF01029 NusB family RY45_07410 PF01243 Pyridoxamine 5'-phosphate oxidase RY45_07410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RY45_07415 PF02798 Glutathione S-transferase, N-terminal domain RY45_07425 PF13508 Acetyltransferase (GNAT) domain RY45_07440 PF08007 Cupin superfamily protein RY45_07445 PF00206 Lyase RY45_07445 PF08328 Adenylosuccinate lyase C-terminal RY45_07450 PF04356 Protein of unknown function (DUF489) RY45_07460 PF00293 NUDIX domain RY45_07465 PF00849 RNA pseudouridylate synthase RY45_07475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_07480 PF07690 Major Facilitator Superfamily RY45_07495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_07495 PF02378 Phosphotransferase system, EIIC RY45_07495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_07510 PF13580 SIS domain RY45_07520 PF13411 MerR HTH family regulatory protein RY45_07525 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_07525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RY45_07530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_07530 PF00356 Bacterial regulatory proteins, lacI family RY45_07535 PF00367 phosphotransferase system, EIIB RY45_07535 PF02378 Phosphotransferase system, EIIC RY45_07540 PF00155 Aminotransferase class I and II RY45_07565 PF01238 Phosphomannose isomerase type I RY45_07570 PF12833 Helix-turn-helix domain RY45_07575 PF00180 Isocitrate/isopropylmalate dehydrogenase RY45_07580 PF00291 Pyridoxal-phosphate dependent enzyme RY45_07585 PF02447 GntP family permease RY45_07590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_07590 PF03466 LysR substrate binding domain RY45_07600 PF04320 Protein with unknown function (DUF469) RY45_07610 PF02384 N-6 DNA Methylase RY45_07615 PF00271 Helicase conserved C-terminal domain RY45_07615 PF08463 EcoEI R protein C-terminal RY45_07615 PF04851 Type III restriction enzyme, res subunit RY45_07615 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RY45_07620 PF14338 Mrr N-terminal domain RY45_07620 PF04471 Restriction endonuclease RY45_07625 PF00589 Phage integrase family RY45_07625 PF02899 Phage integrase, N-terminal SAM-like domain RY45_07685 PF04381 Putative exonuclease, RdgC RY45_07715 PF06630 Enterobacterial exodeoxyribonuclease VIII RY45_07715 PF12684 PDDEXK-like domain of unknown function (DUF3799) RY45_07775 PF00772 DnaB-like helicase N terminal domain RY45_07775 PF03796 DnaB-like helicase C terminal domain RY45_07790 PF05772 NinB protein RY45_07960 PF01668 SmpB protein RY45_07965 PF03364 Polyketide cyclase / dehydrase and lipid transport RY45_07975 PF13460 NAD(P)H-binding RY45_07980 PF04355 SmpA / OmlA family RY45_07985 PF00465 Iron-containing alcohol dehydrogenase RY45_07990 PF01048 Phosphorylase superfamily RY45_07995 PF00849 RNA pseudouridylate synthase RY45_08000 PF01156 Inosine-uridine preferring nucleoside hydrolase RY45_08015 PF07509 Protein of unknown function (DUF1523) RY45_08020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_08020 PF00672 HAMP domain RY45_08025 PF01810 LysE type translocator RY45_08035 PF03471 Transporter associated domain RY45_08035 PF00999 Sodium/hydrogen exchanger family RY45_08035 PF02080 TrkA-C domain RY45_08045 PF02080 TrkA-C domain RY45_08045 PF00999 Sodium/hydrogen exchanger family RY45_08045 PF03471 Transporter associated domain RY45_08050 PF02557 D-alanyl-D-alanine carboxypeptidase RY45_08055 PF07687 Peptidase dimerisation domain RY45_08055 PF01546 Peptidase family M20/M25/M40 RY45_08060 PF03960 ArsC family RY45_08065 PF03466 LysR substrate binding domain RY45_08065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_08075 PF03606 C4-dicarboxylate anaerobic carrier RY45_08080 PF01546 Peptidase family M20/M25/M40 RY45_08080 PF07687 Peptidase dimerisation domain RY45_08090 PF03605 Anaerobic c4-dicarboxylate membrane transporter RY45_08095 PF00152 tRNA synthetases class II (D, K and N) RY45_08095 PF01336 OB-fold nucleic acid binding domain RY45_08115 PF04055 Radical SAM superfamily RY45_08115 PF06968 Biotin and Thiamin Synthesis associated domain RY45_08120 PF00155 Aminotransferase class I and II RY45_08125 PF08241 Methyltransferase domain RY45_08125 PF12697 Alpha/beta hydrolase family RY45_08135 PF01435 Peptidase family M48 RY45_08140 PF13426 PAS domain RY45_08140 PF08447 PAS fold RY45_08140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_08145 PF03476 MOSC N-terminal beta barrel domain RY45_08145 PF03473 MOSC domain RY45_08145 PF03476 MOSC N-terminal beta barrel domain RY45_08145 PF03473 MOSC domain RY45_08145 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_08145 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_08150 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RY45_08150 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RY45_08150 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_08155 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RY45_08155 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RY45_08155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_08155 PF10371 Domain of unknown function RY45_08155 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RY45_08170 PF01554 MatE RY45_08190 PF00291 Pyridoxal-phosphate dependent enzyme RY45_08200 PF00465 Iron-containing alcohol dehydrogenase RY45_08210 PF08359 YsiA-like protein, C-terminal region RY45_08210 PF00440 Bacterial regulatory proteins, tetR family RY45_08215 PF00171 Aldehyde dehydrogenase family RY45_08225 PF00877 NlpC/P60 family RY45_08230 PF12563 Hemolytic toxin N terminal RY45_08230 PF07968 Leukocidin/Hemolysin toxin family RY45_08235 PF03466 LysR substrate binding domain RY45_08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_08240 PF00578 AhpC/TSA family RY45_08240 PF10417 C-terminal domain of 1-Cys peroxiredoxin RY45_08260 PF08003 Protein of unknown function (DUF1698) RY45_08265 PF13649 Methyltransferase domain RY45_08270 PF01904 Protein of unknown function DUF72 RY45_08275 PF02938 GAD domain RY45_08275 PF01336 OB-fold nucleic acid binding domain RY45_08275 PF00152 tRNA synthetases class II (D, K and N) RY45_08280 PF01709 Transcriptional regulator RY45_08285 PF00884 Sulfatase RY45_08285 PF08019 Phosphoethanolamine transferase EptA/EptB RY45_08290 PF00480 ROK family RY45_08290 PF01047 MarR family RY45_08295 PF01979 Amidohydrolase family RY45_08300 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RY45_08305 PF02378 Phosphotransferase system, EIIC RY45_08305 PF00367 phosphotransferase system, EIIB RY45_08305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RY45_08310 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain RY45_08310 PF02838 Glycosyl hydrolase family 20, domain 2 RY45_08310 PF00728 Glycosyl hydrolase family 20, catalytic domain RY45_08310 PF03173 Putative carbohydrate binding domain RY45_08315 PF00749 tRNA synthetases class I (E and Q), catalytic domain RY45_08315 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RY45_08320 PF01475 Ferric uptake regulator family RY45_08330 PF00258 Flavodoxin RY45_08335 PF01402 Ribbon-helix-helix protein, copG family RY45_08345 PF12697 Alpha/beta hydrolase family RY45_08350 PF03925 SeqA protein C-terminal domain RY45_08350 PF17206 SeqA protein N-terminal domain RY45_08355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RY45_08355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RY45_08355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RY45_08355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RY45_08365 PF01047 MarR family RY45_08380 PF13406 Transglycosylase SLT domain RY45_08385 PF01066 CDP-alcohol phosphatidyltransferase RY45_08390 PF00005 ABC transporter RY45_08400 PF13416 Bacterial extracellular solute-binding protein RY45_08405 PF00403 Heavy-metal-associated domain RY45_08405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_08405 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_08410 PF02627 Carboxymuconolactone decarboxylase family RY45_08420 PF01625 Peptide methionine sulfoxide reductase RY45_08425 PF05698 Bacterial trigger factor protein (TF) C-terminus RY45_08435 PF17243 POTRA domain TamA domain 1 RY45_08435 PF01103 Surface antigen RY45_08435 PF07244 Surface antigen variable number repeat RY45_08440 PF04357 TamB, inner membrane protein subunit of TAM complex RY45_08460 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RY45_08465 PF00563 EAL domain RY45_08465 PF00990 Diguanylate cyclase, GGDEF domain RY45_08465 PF03707 Bacterial signalling protein N terminal repeat RY45_08470 PF14718 Soluble lytic murein transglycosylase L domain RY45_08470 PF01464 Transglycosylase SLT domain RY45_08475 PF00356 Bacterial regulatory proteins, lacI family RY45_08485 PF03061 Thioesterase superfamily RY45_08495 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_08500 PF01464 Transglycosylase SLT domain RY45_08500 PF01476 LysM domain RY45_08505 PF00753 Metallo-beta-lactamase superfamily RY45_08505 PF16123 Hydroxyacylglutathione hydrolase C-terminus RY45_08510 PF08241 Methyltransferase domain RY45_08515 PF00075 RNase H RY45_08520 PF00929 Exonuclease RY45_08530 PF02541 Ppx/GppA phosphatase family RY45_08535 PF02503 Polyphosphate kinase middle domain RY45_08535 PF17941 Polyphosphate kinase C-terminal domain 1 RY45_08535 PF13089 Polyphosphate kinase N-terminal domain RY45_08535 PF13090 Polyphosphate kinase C-terminal domain 2 RY45_08540 PF01842 ACT domain RY45_08550 PF00158 Sigma-54 interaction domain RY45_08550 PF00072 Response regulator receiver domain RY45_08550 PF02954 Bacterial regulatory protein, Fis family RY45_08555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_08555 PF00512 His Kinase A (phospho-acceptor) domain RY45_08555 PF00989 PAS fold RY45_08560 PF00158 Sigma-54 interaction domain RY45_08560 PF02954 Bacterial regulatory protein, Fis family RY45_08565 PF01784 NIF3 (NGG1p interacting factor 3) RY45_08570 PF00551 Formyl transferase RY45_08575 PF00586 AIR synthase related protein, N-terminal domain RY45_08575 PF02769 AIR synthase related protein, C-terminal domain RY45_08590 PF00308 Bacterial dnaA protein RY45_08595 PF00463 Isocitrate lyase family RY45_08600 PF01274 Malate synthase RY45_08610 PF14437 MafB19-like deaminase RY45_08615 PF00528 Binding-protein-dependent transport system inner membrane component RY45_08630 PF01895 PhoU domain RY45_08645 PF01527 Transposase RY45_08650 PF00571 CBS domain RY45_08650 PF01595 Cyclin M transmembrane N-terminal domain RY45_08650 PF03471 Transporter associated domain RY45_08660 PF02574 Homocysteine S-methyltransferase RY45_08660 PF02310 B12 binding domain RY45_08660 PF02607 B12 binding domain RY45_08660 PF02965 Vitamin B12 dependent methionine synthase, activation domain RY45_08660 PF00809 Pterin binding enzyme RY45_08665 PF13520 Amino acid permease RY45_08680 PF00005 ABC transporter RY45_08685 PF00528 Binding-protein-dependent transport system inner membrane component RY45_08690 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_08695 PF08448 PAS fold RY45_08695 PF00990 Diguanylate cyclase, GGDEF domain RY45_08700 PF07690 Major Facilitator Superfamily RY45_08705 PF05231 MASE1 RY45_08705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_08705 PF07730 Histidine kinase RY45_08710 PF00196 Bacterial regulatory proteins, luxR family RY45_08710 PF00072 Response regulator receiver domain RY45_08715 PF14760 Rnk N-terminus RY45_08715 PF01272 Transcription elongation factor, GreA/GreB, C-term RY45_08735 PF00245 Alkaline phosphatase RY45_08740 PF00245 Alkaline phosphatase RY45_08745 PF01926 50S ribosome-binding GTPase RY45_08750 PF07690 Major Facilitator Superfamily RY45_08755 PF00850 Histone deacetylase domain RY45_08765 PF06733 DEAD_2 RY45_08765 PF13307 Helicase C-terminal domain RY45_08770 PF13609 Gram-negative porin RY45_08780 PF00155 Aminotransferase class I and II RY45_08790 PF03453 MoeA N-terminal region (domain I and II) RY45_08790 PF03454 MoeA C-terminal region (domain IV) RY45_08790 PF00994 Probable molybdopterin binding domain RY45_08795 PF01227 GTP cyclohydrolase I RY45_08800 PF00672 HAMP domain RY45_08800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_08800 PF17200 Single Cache domain 2 RY45_08805 PF01268 Formate--tetrahydrofolate ligase RY45_08815 PF03466 LysR substrate binding domain RY45_08815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_08820 PF04264 YceI-like domain RY45_08845 PF07687 Peptidase dimerisation domain RY45_08845 PF01546 Peptidase family M20/M25/M40 RY45_08855 PF17810 Arginine decarboxylase helical bundle domain RY45_08855 PF17944 Arginine decarboxylase C-terminal helical extension RY45_08855 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RY45_08870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_08870 PF00672 HAMP domain RY45_08880 PF01042 Endoribonuclease L-PSP RY45_08885 PF03313 Serine dehydratase alpha chain RY45_08895 PF00300 Histidine phosphatase superfamily (branch 1) RY45_08900 PF01844 HNH endonuclease RY45_08910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_08920 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RY45_08920 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RY45_08925 PF00849 RNA pseudouridylate synthase RY45_08925 PF01479 S4 domain RY45_08930 PF07690 Major Facilitator Superfamily RY45_08940 PF03466 LysR substrate binding domain RY45_08940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_08945 PF07690 Major Facilitator Superfamily RY45_08965 PF00892 EamA-like transporter family RY45_08970 PF04391 Protein of unknown function (DUF533) RY45_08975 PF00155 Aminotransferase class I and II RY45_08975 PF00392 Bacterial regulatory proteins, gntR family RY45_08980 PF01654 Cytochrome bd terminal oxidase subunit I RY45_08985 PF02322 Cytochrome bd terminal oxidase subunit II RY45_08995 PF07690 Major Facilitator Superfamily RY45_09000 PF00248 Aldo/keto reductase family RY45_09020 PF03466 LysR substrate binding domain RY45_09020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_09025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RY45_09025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RY45_09030 PF00230 Major intrinsic protein RY45_09035 PF07690 Major Facilitator Superfamily RY45_09040 PF00455 DeoR C terminal sensor domain RY45_09040 PF08220 DeoR-like helix-turn-helix domain RY45_09045 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RY45_09045 PF01266 FAD dependent oxidoreductase RY45_09050 PF03009 Glycerophosphoryl diester phosphodiesterase family RY45_09060 PF00793 DAHP synthetase I family RY45_09065 PF02153 Prephenate dehydrogenase RY45_09065 PF01817 Chorismate mutase type II RY45_09070 PF03466 LysR substrate binding domain RY45_09070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_09075 PF04219 Protein of unknown function, DUF RY45_09080 PF03974 Ecotin RY45_09100 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RY45_09100 PF00326 Prolyl oligopeptidase family RY45_09105 PF07715 TonB-dependent Receptor Plug Domain RY45_09105 PF00593 TonB dependent receptor RY45_09110 PF11893 Domain of unknown function (DUF3413) RY45_09110 PF00884 Sulfatase RY45_09115 PF07208 Protein of unknown function (DUF1414) RY45_09120 PF04245 37-kD nucleoid-associated bacterial protein RY45_09125 PF01547 Bacterial extracellular solute-binding protein RY45_09130 PF14785 Maltose transport system permease protein MalF P2 domain RY45_09130 PF00528 Binding-protein-dependent transport system inner membrane component RY45_09135 PF00528 Binding-protein-dependent transport system inner membrane component RY45_09140 PF00005 ABC transporter RY45_09140 PF08402 TOBE domain RY45_09145 PF03976 Polyphosphate kinase 2 (PPK2) RY45_09150 PF00561 alpha/beta hydrolase fold RY45_09160 PF01594 AI-2E family transporter RY45_09165 PF01206 Sulfurtransferase TusA RY45_09170 PF01435 Peptidase family M48 RY45_09170 PF13181 Tetratricopeptide repeat RY45_09175 PF00578 AhpC/TSA family RY45_09180 PF03960 ArsC family RY45_09195 PF04336 Acyl carrier protein phosphodiesterase RY45_09200 PF01979 Amidohydrolase family RY45_09205 PF03956 Lysine exporter LysO RY45_09210 PF00005 ABC transporter RY45_09215 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_09220 PF00528 Binding-protein-dependent transport system inner membrane component RY45_09225 PF00528 Binding-protein-dependent transport system inner membrane component RY45_09235 PF04055 Radical SAM superfamily RY45_09240 PF00563 EAL domain RY45_09240 PF00990 Diguanylate cyclase, GGDEF domain RY45_09240 PF03707 Bacterial signalling protein N terminal repeat RY45_09245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_09245 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_09250 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RY45_09250 PF00207 Alpha-2-macroglobulin family RY45_09250 PF07703 Alpha-2-macroglobulin bait region domain RY45_09250 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RY45_09250 PF01835 MG2 domain RY45_09250 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RY45_09250 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RY45_09250 PF07678 A-macroglobulin TED domain RY45_09250 PF17962 Bacterial macroglobulin domain 6 RY45_09255 PF06832 Penicillin-Binding Protein C-terminus Family RY45_09255 PF00912 Transglycosylase RY45_09255 PF00905 Penicillin binding protein transpeptidase domain RY45_09265 PF02926 THUMP domain RY45_09265 PF02568 Thiamine biosynthesis protein (ThiI) RY45_09275 PF03458 UPF0126 domain RY45_09280 PF00669 Bacterial flagellin N-terminal helical region RY45_09280 PF07196 Flagellin hook IN motif RY45_09280 PF00700 Bacterial flagellin C-terminal helical region RY45_09285 PF00669 Bacterial flagellin N-terminal helical region RY45_09285 PF07196 Flagellin hook IN motif RY45_09285 PF00700 Bacterial flagellin C-terminal helical region RY45_09295 PF07195 Flagellar hook-associated protein 2 C-terminus RY45_09295 PF07196 Flagellin hook IN motif RY45_09295 PF02465 Flagellar hook-associated protein 2 N-terminus RY45_09300 PF02561 Flagellar protein FliS RY45_09315 PF01497 Periplasmic binding protein RY45_09325 PF01048 Phosphorylase superfamily RY45_09335 PF02535 ZIP Zinc transporter RY45_09340 PF00672 HAMP domain RY45_09340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_09345 PF00459 Inositol monophosphatase family RY45_09355 PF00043 Glutathione S-transferase, C-terminal domain RY45_09355 PF02798 Glutathione S-transferase, N-terminal domain RY45_09360 PF07690 Major Facilitator Superfamily RY45_09365 PF05164 Cell division protein ZapA RY45_09370 PF03695 Uncharacterised protein family (UPF0149) RY45_09375 PF01494 FAD binding domain RY45_09380 PF01494 FAD binding domain RY45_09385 PF01571 Aminomethyltransferase folate-binding domain RY45_09385 PF08669 Glycine cleavage T-protein C-terminal barrel domain RY45_09390 PF01597 Glycine cleavage H-protein RY45_09395 PF02347 Glycine cleavage system P-protein RY45_09415 PF06953 Arsenical resistance operon trans-acting repressor ArsD RY45_09420 PF02374 Anion-transporting ATPase RY45_09425 PF01758 Sodium Bile acid symporter family RY45_09430 PF03960 ArsC family RY45_09435 PF08241 Methyltransferase domain RY45_09445 PF07690 Major Facilitator Superfamily RY45_09450 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_09450 PF13192 Thioredoxin domain RY45_09455 PF00578 AhpC/TSA family RY45_09455 PF10417 C-terminal domain of 1-Cys peroxiredoxin RY45_09460 PF00571 CBS domain RY45_09465 PF02547 Queuosine biosynthesis protein RY45_09470 PF01702 Queuine tRNA-ribosyltransferase RY45_09475 PF02699 Preprotein translocase subunit RY45_09480 PF02355 Protein export membrane protein RY45_09480 PF13721 SecD export protein N-terminal TM region RY45_09480 PF07549 SecD/SecF GG Motif RY45_09485 PF07549 SecD/SecF GG Motif RY45_09485 PF02355 Protein export membrane protein RY45_09495 PF07719 Tetratricopeptide repeat RY45_09495 PF13181 Tetratricopeptide repeat RY45_09520 PF00588 SpoU rRNA Methylase family RY45_09525 PF02082 Transcriptional regulator RY45_09530 PF00266 Aminotransferase class-V RY45_09535 PF01592 NifU-like N terminal domain RY45_09540 PF01521 Iron-sulphur cluster biosynthesis RY45_09545 PF07743 HSCB C-terminal oligomerisation domain RY45_09550 PF00012 Hsp70 protein RY45_09555 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_09560 PF12404 Peptidase RY45_09560 PF00883 Cytosol aminopeptidase family, catalytic domain RY45_09565 PF12404 Peptidase RY45_09565 PF00883 Cytosol aminopeptidase family, catalytic domain RY45_09570 PF00334 Nucleoside diphosphate kinase RY45_09575 PF04055 Radical SAM superfamily RY45_09585 PF13464 Domain of unknown function (DUF4115) RY45_09590 PF04551 GcpE protein RY45_09595 PF13393 Histidyl-tRNA synthetase RY45_09595 PF03129 Anticodon binding domain RY45_09600 PF09976 Tetratricopeptide repeat-like domain RY45_09605 PF13360 PQQ-like domain RY45_09610 PF01926 50S ribosome-binding GTPase RY45_09610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RY45_09615 PF07191 zinc-ribbons RY45_09620 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_09620 PF01464 Transglycosylase SLT domain RY45_09625 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RY45_09625 PF02769 AIR synthase related protein, C-terminal domain RY45_09625 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RY45_09630 PF01966 HD domain RY45_09635 PF00072 Response regulator receiver domain RY45_09645 PF00361 Proton-conducting membrane transporter RY45_09650 PF00361 Proton-conducting membrane transporter RY45_09655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RY45_09655 PF00361 Proton-conducting membrane transporter RY45_09660 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RY45_09665 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RY45_09670 PF12838 4Fe-4S dicluster domain RY45_09675 PF00146 NADH dehydrogenase RY45_09680 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RY45_09680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_09680 PF00384 Molybdopterin oxidoreductase RY45_09685 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RY45_09685 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RY45_09695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RY45_09695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RY45_09700 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RY45_09705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RY45_09710 PF13677 Membrane MotB of proton-channel complex MotA/MotB RY45_09710 PF00691 OmpA family RY45_09715 PF01618 MotA/TolQ/ExbB proton channel family RY45_09730 PF04536 TPM domain RY45_09740 PF03411 Penicillin-insensitive murein endopeptidase RY45_09750 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RY45_09755 PF00248 Aldo/keto reductase family RY45_09770 PF01212 Beta-eliminating lyase RY45_09780 PF00072 Response regulator receiver domain RY45_09785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_09785 PF03466 LysR substrate binding domain RY45_09795 PF13188 PAS domain RY45_09795 PF03707 Bacterial signalling protein N terminal repeat RY45_09795 PF00563 EAL domain RY45_09795 PF00990 Diguanylate cyclase, GGDEF domain RY45_09800 PF00881 Nitroreductase family RY45_09815 PF07690 Major Facilitator Superfamily RY45_09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_09820 PF03466 LysR substrate binding domain RY45_09825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_09825 PF03466 LysR substrate binding domain RY45_09830 PF00925 GTP cyclohydrolase II RY45_09835 PF02224 Cytidylate kinase RY45_09840 PF00575 S1 RNA binding domain RY45_09845 PF00216 Bacterial DNA-binding protein RY45_09855 PF18073 Rubredoxin metal binding domain RY45_09860 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RY45_09875 PF06508 Queuosine biosynthesis protein QueC RY45_09880 PF04055 Radical SAM superfamily RY45_09885 PF12843 Putative quorum-sensing-regulated virulence factor RY45_09890 PF01923 Cobalamin adenosyltransferase RY45_09895 PF00816 H-NS histone family RY45_09900 PF03553 Na+/H+ antiporter family RY45_09905 PF00265 Thymidine kinase RY45_09915 PF10722 Putative bacterial sensory transduction regulator RY45_09925 PF05638 Type VI secretion system effector, Hcp RY45_09930 PF04717 Type VI secretion system, phage-baseplate injector RY45_09970 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RY45_09970 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RY45_09975 PF00313 'Cold-shock' DNA-binding domain RY45_09980 PF02617 ATP-dependent Clp protease adaptor protein ClpS RY45_09985 PF00004 ATPase family associated with various cellular activities (AAA) RY45_09985 PF07724 AAA domain (Cdc48 subfamily) RY45_09985 PF17871 AAA lid domain RY45_09985 PF02861 Clp amino terminal domain, pathogenicity island component RY45_09985 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_09990 PF01176 Translation initiation factor 1A / IF-1 RY45_09995 PF04377 Arginine-tRNA-protein transferase, C terminus RY45_09995 PF04376 Arginine-tRNA-protein transferase, N terminus RY45_10000 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RY45_10005 PF05433 Glycine zipper 2TM domain RY45_10010 PF00990 Diguanylate cyclase, GGDEF domain RY45_10010 PF17158 Membrane-associated sensor, integral membrane domain RY45_10015 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_10020 PF01037 Lrp/AsnC ligand binding domain RY45_10025 PF09397 Ftsk gamma domain RY45_10025 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RY45_10025 PF01580 FtsK/SpoIIIE family RY45_10025 PF17854 FtsK alpha domain RY45_10030 PF03548 Outer membrane lipoprotein carrier protein LolA RY45_10035 PF12002 MgsA AAA+ ATPase C terminal RY45_10035 PF00004 ATPase family associated with various cellular activities (AAA) RY45_10035 PF16193 AAA C-terminal domain RY45_10045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RY45_10045 PF02403 Seryl-tRNA synthetase N-terminal domain RY45_10050 PF02674 Colicin V production protein RY45_10055 PF00156 Phosphoribosyl transferase domain RY45_10060 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RY45_10065 PF00005 ABC transporter RY45_10070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_10070 PF00005 ABC transporter RY45_10075 PF12911 N-terminal TM domain of oligopeptide transport permease C RY45_10075 PF00528 Binding-protein-dependent transport system inner membrane component RY45_10080 PF00528 Binding-protein-dependent transport system inner membrane component RY45_10085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_10090 PF00158 Sigma-54 interaction domain RY45_10090 PF02954 Bacterial regulatory protein, Fis family RY45_10095 PF04012 PspA/IM30 family RY45_10100 PF06667 Phage shock protein B RY45_10110 PF04317 YcjX-like family, DUF463 RY45_10115 PF05128 Domain of unknown function (DUF697) RY45_10120 PF00351 Biopterin-dependent aromatic amino acid hydroxylase RY45_10125 PF01329 Pterin 4 alpha carbinolamine dehydratase RY45_10130 PF00158 Sigma-54 interaction domain RY45_10130 PF18024 Helix-turn-helix domain RY45_10135 PF13689 YfiR/HmsC-like RY45_10140 PF00990 Diguanylate cyclase, GGDEF domain RY45_10140 PF17152 Periplasmic sensor domain RY45_10145 PF00691 OmpA family RY45_10150 PF03741 Integral membrane protein TerC family RY45_10160 PF08891 YfcL protein RY45_10165 PF00501 AMP-binding enzyme RY45_10170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RY45_10170 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region RY45_10175 PF04172 LrgB-like family RY45_10180 PF03788 LrgA family RY45_10195 PF08411 Exonuclease C-terminal RY45_10195 PF00929 Exonuclease RY45_10200 PF11762 L-arabinose isomerase C-terminal domain RY45_10200 PF02610 L-arabinose isomerase RY45_10205 PF00596 Class II Aldolase and Adducin N-terminal domain RY45_10210 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RY45_10215 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_10220 PF00005 ABC transporter RY45_10225 PF02653 Branched-chain amino acid transport system / permease component RY45_10230 PF12833 Helix-turn-helix domain RY45_10230 PF02311 AraC-like ligand binding domain RY45_10235 PF03466 LysR substrate binding domain RY45_10235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_10240 PF02678 Pirin RY45_10240 PF05726 Pirin C-terminal cupin domain RY45_10245 PF00444 Ribosomal protein L36 RY45_10250 PF01197 Ribosomal protein L31 RY45_10265 PF01863 Protein of unknown function DUF45 RY45_10280 PF03606 C4-dicarboxylate anaerobic carrier RY45_10290 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RY45_10290 PF01266 FAD dependent oxidoreductase RY45_10295 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_10295 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_10310 PF00285 Citrate synthase, C-terminal domain RY45_10315 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RY45_10320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RY45_10325 PF02910 Fumarate reductase flavoprotein C-term RY45_10325 PF00890 FAD binding domain RY45_10330 PF13085 2Fe-2S iron-sulfur cluster binding domain RY45_10335 PF02779 Transketolase, pyrimidine binding domain RY45_10335 PF16870 2-oxoglutarate dehydrogenase C-terminal RY45_10335 PF16078 2-oxoglutarate dehydrogenase N-terminus RY45_10335 PF00676 Dehydrogenase E1 component RY45_10340 PF02817 e3 binding domain RY45_10340 PF00364 Biotin-requiring enzyme RY45_10340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RY45_10345 PF08442 ATP-grasp domain RY45_10345 PF00549 CoA-ligase RY45_10350 PF00549 CoA-ligase RY45_10350 PF02629 CoA binding domain RY45_10360 PF03692 Putative zinc- or iron-chelating domain RY45_10365 PF01266 FAD dependent oxidoreductase RY45_10370 PF00528 Binding-protein-dependent transport system inner membrane component RY45_10375 PF00005 ABC transporter RY45_10385 PF07702 UTRA domain RY45_10385 PF00392 Bacterial regulatory proteins, gntR family RY45_10390 PF00266 Aminotransferase class-V RY45_10405 PF01228 Glycine radical RY45_10405 PF02901 Pyruvate formate lyase-like RY45_10410 PF01226 Formate/nitrite transporter RY45_10415 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RY45_10415 PF18381 YcaO cyclodehydratase C-terminal domain RY45_10420 PF00893 Small Multidrug Resistance protein RY45_10425 PF01118 Semialdehyde dehydrogenase, NAD binding domain RY45_10425 PF02774 Semialdehyde dehydrogenase, dimerisation domain RY45_10430 PF05193 Peptidase M16 inactive domain RY45_10430 PF00675 Insulinase (Peptidase family M16) RY45_10435 PF01053 Cys/Met metabolism PLP-dependent enzyme RY45_10445 PF13460 NAD(P)H-binding RY45_10450 PF03466 LysR substrate binding domain RY45_10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_10455 PF00106 short chain dehydrogenase RY45_10460 PF12833 Helix-turn-helix domain RY45_10465 PF07715 TonB-dependent Receptor Plug Domain RY45_10465 PF00593 TonB dependent receptor RY45_10475 PF03466 LysR substrate binding domain RY45_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_10480 PF01717 Cobalamin-independent synthase, Catalytic domain RY45_10480 PF08267 Cobalamin-independent synthase, N-terminal domain RY45_10490 PF00478 IMP dehydrogenase / GMP reductase domain RY45_10490 PF00571 CBS domain RY45_10495 PF07969 Amidohydrolase family RY45_10505 PF01266 FAD dependent oxidoreductase RY45_10510 PF04244 Deoxyribodipyrimidine photo-lyase-related protein RY45_10515 PF01212 Beta-eliminating lyase RY45_10520 PF00768 D-alanyl-D-alanine carboxypeptidase RY45_10525 PF00293 NUDIX domain RY45_10530 PF03918 Cytochrome C biogenesis protein RY45_10535 PF08534 Redoxin RY45_10540 PF01578 Cytochrome C assembly protein RY45_10540 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RY45_10545 PF03916 Polysulphide reductase, NrfD RY45_10550 PF00037 4Fe-4S binding domain RY45_10550 PF13247 4Fe-4S dicluster domain RY45_10555 PF13435 Cytochrome c554 and c-prime RY45_10555 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RY45_10560 PF02335 Cytochrome c552 RY45_10570 PF13183 4Fe-4S dicluster domain RY45_10570 PF02754 Cysteine-rich domain RY45_10575 PF00890 FAD binding domain RY45_10580 PF01266 FAD dependent oxidoreductase RY45_10580 PF04324 BFD-like [2Fe-2S] binding domain RY45_10585 PF02810 SEC-C motif RY45_10590 PF17200 Single Cache domain 2 RY45_10590 PF00672 HAMP domain RY45_10590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_10595 PF01047 MarR family RY45_10595 PF00480 ROK family RY45_10600 PF17203 Single cache domain 3 RY45_10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_10600 PF00989 PAS fold RY45_10600 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RY45_10605 PF12431 Transcriptional regulator RY45_10605 PF08279 HTH domain RY45_10605 PF00072 Response regulator receiver domain RY45_10610 PF01970 Tripartite tricarboxylate transporter TctA family RY45_10625 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_10625 PF01464 Transglycosylase SLT domain RY45_10630 PF02080 TrkA-C domain RY45_10630 PF06826 Predicted Permease Membrane Region RY45_10640 PF04851 Type III restriction enzyme, res subunit RY45_10640 PF00271 Helicase conserved C-terminal domain RY45_10640 PF02151 UvrB/uvrC motif RY45_10640 PF12344 Ultra-violet resistance protein B RY45_10640 PF17757 UvrB interaction domain RY45_10650 PF09335 SNARE associated Golgi protein RY45_10655 PF02600 Disulfide bond formation protein DsbB RY45_10660 PF06450 Bacterial Na+/H+ antiporter B (NhaB) RY45_10665 PF00392 Bacterial regulatory proteins, gntR family RY45_10665 PF07840 FadR C-terminal domain RY45_10670 PF04293 SpoVR like protein RY45_10675 PF04285 Protein of unknown function (DUF444) RY45_10680 PF08298 PrkA AAA domain RY45_10680 PF06798 PrkA serine protein kinase C-terminal domain RY45_10685 PF00270 DEAD/DEAH box helicase RY45_10685 PF00271 Helicase conserved C-terminal domain RY45_10685 PF00570 HRDC domain RY45_10685 PF09382 RQC domain RY45_10685 PF16124 RecQ zinc-binding RY45_10690 PF00375 Sodium:dicarboxylate symporter family RY45_10695 PF03222 Tryptophan/tyrosine permease family RY45_10700 PF00293 NUDIX domain RY45_10705 PF00425 chorismate binding enzyme RY45_10705 PF04715 Anthranilate synthase component I, N terminal region RY45_10710 PF05681 Fumarate hydratase (Fumerase) RY45_10710 PF05683 Fumarase C-terminus RY45_10730 PF00343 Carbohydrate phosphorylase RY45_10735 PF00939 Sodium:sulfate symporter transmembrane region RY45_10740 PF00085 Thioredoxin RY45_10745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_10745 PF00512 His Kinase A (phospho-acceptor) domain RY45_10745 PF01627 Hpt domain RY45_10745 PF00672 HAMP domain RY45_10745 PF00072 Response regulator receiver domain RY45_10745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RY45_10750 PF00664 ABC transporter transmembrane region RY45_10750 PF00005 ABC transporter RY45_10755 PF00005 ABC transporter RY45_10755 PF00664 ABC transporter transmembrane region RY45_10770 PF01575 MaoC like domain RY45_10775 PF00561 alpha/beta hydrolase fold RY45_10775 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RY45_10795 PF08543 Phosphomethylpyrimidine kinase RY45_10800 PF03992 Antibiotic biosynthesis monooxygenase RY45_10805 PF00465 Iron-containing alcohol dehydrogenase RY45_10810 PF00583 Acetyltransferase (GNAT) family RY45_10820 PF01928 CYTH domain RY45_10830 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RY45_10840 PF13673 Acetyltransferase (GNAT) domain RY45_10845 PF00270 DEAD/DEAH box helicase RY45_10845 PF00271 Helicase conserved C-terminal domain RY45_10850 PF00255 Glutathione peroxidase RY45_10860 PF01820 D-ala D-ala ligase N-terminus RY45_10860 PF07478 D-ala D-ala ligase C-terminus RY45_10875 PF01925 Sulfite exporter TauE/SafE RY45_10880 PF03466 LysR substrate binding domain RY45_10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_10890 PF14525 AraC-binding-like domain RY45_10890 PF12833 Helix-turn-helix domain RY45_10895 PF11398 Protein of unknown function (DUF2813) RY45_10905 PF00128 Alpha amylase, catalytic domain RY45_10905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RY45_10935 PF02789 Cytosol aminopeptidase family, N-terminal domain RY45_10935 PF00883 Cytosol aminopeptidase family, catalytic domain RY45_10940 PF13419 Haloacid dehalogenase-like hydrolase RY45_10945 PF07687 Peptidase dimerisation domain RY45_10945 PF01546 Peptidase family M20/M25/M40 RY45_10950 PF00365 Phosphofructokinase RY45_10955 PF00121 Triosephosphate isomerase RY45_10960 PF02698 DUF218 domain RY45_10970 PF03882 MukF winged-helix domain RY45_10970 PF17192 MukF middle domain RY45_10970 PF17193 MukF C-terminal domain RY45_10975 PF04288 MukE-like family RY45_10980 PF04310 MukB N-terminal RY45_10980 PF16330 MukB hinge domain RY45_10985 PF05036 Sporulation related domain RY45_10985 PF03330 Lytic transglycolase RY45_11000 PF01327 Polypeptide deformylase RY45_11030 PF02567 Phenazine biosynthesis-like protein RY45_11040 PF03831 PhnA domain RY45_11040 PF08274 PhnA Zinc-Ribbon RY45_11070 PF00990 Diguanylate cyclase, GGDEF domain RY45_11070 PF08448 PAS fold RY45_11080 PF01713 Smr domain RY45_11085 PF05175 Methyltransferase small domain RY45_11090 PF01264 Chorismate synthase RY45_11100 PF00270 DEAD/DEAH box helicase RY45_11100 PF00271 Helicase conserved C-terminal domain RY45_11115 PF03222 Tryptophan/tyrosine permease family RY45_11120 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_11120 PF00356 Bacterial regulatory proteins, lacI family RY45_11125 PF00381 PTS HPr component phosphorylation site RY45_11125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_11130 PF00294 pfkB family carbohydrate kinase RY45_11135 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_11135 PF02378 Phosphotransferase system, EIIC RY45_11140 PF06560 Glucose-6-phosphate isomerase (GPI) RY45_11145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_11145 PF00356 Bacterial regulatory proteins, lacI family RY45_11160 PF03610 PTS system fructose IIA component RY45_11160 PF03830 PTS system sorbose subfamily IIB component RY45_11165 PF03609 PTS system sorbose-specific iic component RY45_11170 PF03613 PTS system mannose/fructose/sorbose family IID component RY45_11180 PF06945 Protein of unknown function (DUF1289) RY45_11185 PF06725 3D domain RY45_11185 PF03562 MltA specific insert domain RY45_11190 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_11195 PF00268 Ribonucleotide reductase, small chain RY45_11200 PF03477 ATP cone domain RY45_11200 PF02867 Ribonucleotide reductase, barrel domain RY45_11200 PF00317 Ribonucleotide reductase, all-alpha domain RY45_11205 PF13419 Haloacid dehalogenase-like hydrolase RY45_11215 PF03989 DNA gyrase C-terminal domain, beta-propeller RY45_11215 PF00521 DNA gyrase/topoisomerase IV, subunit A RY45_11220 PF04055 Radical SAM superfamily RY45_11230 PF02824 TGS domain RY45_11230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RY45_11230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RY45_11230 PF03129 Anticodon binding domain RY45_11235 PF05198 Translation initiation factor IF-3, N-terminal domain RY45_11235 PF00707 Translation initiation factor IF-3, C-terminal domain RY45_11240 PF01632 Ribosomal protein L35 RY45_11245 PF00453 Ribosomal protein L20 RY45_11250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RY45_11250 PF01409 tRNA synthetases class II core domain (F) RY45_11255 PF03147 Ferredoxin-fold anticodon binding domain RY45_11255 PF01588 Putative tRNA binding domain RY45_11255 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RY45_11255 PF03483 B3/4 domain RY45_11255 PF03484 tRNA synthetase B5 domain RY45_11260 PF00216 Bacterial DNA-binding protein RY45_11280 PF02146 Sir2 family RY45_11290 PF00563 EAL domain RY45_11290 PF00990 Diguanylate cyclase, GGDEF domain RY45_11290 PF03707 Bacterial signalling protein N terminal repeat RY45_11295 PF00356 Bacterial regulatory proteins, lacI family RY45_11300 PF00294 pfkB family carbohydrate kinase RY45_11305 PF13407 Periplasmic binding protein domain RY45_11310 PF02653 Branched-chain amino acid transport system / permease component RY45_11315 PF00005 ABC transporter RY45_11320 PF05025 RbsD / FucU transport protein family RY45_11325 PF13417 Glutathione S-transferase, N-terminal domain RY45_11340 PF01171 PP-loop family RY45_11345 PF00582 Universal stress protein family RY45_11350 PF00027 Cyclic nucleotide-binding domain RY45_11350 PF13545 Crp-like helix-turn-helix domain RY45_11365 PF00403 Heavy-metal-associated domain RY45_11375 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RY45_11375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RY45_11390 PF00115 Cytochrome C and Quinol oxidase polypeptide I RY45_11400 PF13185 GAF domain RY45_11405 PF04352 ProQ/FINO family RY45_11405 PF17516 ProQ C-terminal domain RY45_11410 PF17804 Tail specific protease N-terminal domain RY45_11410 PF03572 Peptidase family S41 RY45_11410 PF00595 PDZ domain RY45_11410 PF11818 C-terminal domain of tail specific protease (DUF3340) RY45_11415 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RY45_11415 PF01433 Peptidase family M1 domain RY45_11415 PF11940 Domain of unknown function (DUF3458) Ig-like fold RY45_11425 PF05088 Bacterial NAD-glutamate dehydrogenase RY45_11430 PF01180 Dihydroorotate dehydrogenase RY45_11435 PF07126 Cell-division protein ZapC RY45_11440 PF01170 Putative RNA methylase family UPF0020 RY45_11440 PF10672 S-adenosylmethionine-dependent methyltransferase RY45_11440 PF02926 THUMP domain RY45_11450 PF00005 ABC transporter RY45_11450 PF16326 ABC transporter C-terminal domain RY45_11450 PF12848 ABC transporter RY45_11460 PF07977 FabA-like domain RY45_11465 PF05362 Lon protease (S16) C-terminal proteolytic domain RY45_11465 PF13654 AAA domain RY45_11475 PF07130 YebG protein RY45_11485 PF00106 short chain dehydrogenase RY45_11510 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RY45_11510 PF06974 Protein of unknown function (DUF1298) RY45_11525 PF03972 MmgE/PrpD family RY45_11530 PF00285 Citrate synthase, C-terminal domain RY45_11545 PF04403 Paraquat-inducible protein A RY45_11550 PF02470 MlaD protein RY45_11555 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RY45_11555 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RY45_11555 PF01189 16S rRNA methyltransferase RsmB/F RY45_11565 PF00589 Phage integrase family RY45_11570 PF01026 TatD related DNase RY45_11575 PF09115 DNA polymerase III, delta subunit, C terminal RY45_11580 PF02223 Thymidylate kinase RY45_11585 PF02618 YceG-like family RY45_11590 PF01063 Amino-transferase class IV RY45_11595 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_11595 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_11600 PF00550 Phosphopantetheine attachment site RY45_11610 PF00698 Acyl transferase domain RY45_11615 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RY45_11615 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RY45_11620 PF02504 Fatty acid synthesis protein RY45_11625 PF01783 Ribosomal L32p protein family RY45_11630 PF02620 Large ribosomal RNA subunit accumulation protein YceD RY45_11640 PF03466 LysR substrate binding domain RY45_11640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_11645 PF07690 Major Facilitator Superfamily RY45_11650 PF02545 Maf-like protein RY45_11655 PF13419 Haloacid dehalogenase-like hydrolase RY45_11660 PF01479 S4 domain RY45_11660 PF00849 RNA pseudouridylate synthase RY45_11665 PF10150 Ribonuclease E/G family RY45_11665 PF00575 S1 RNA binding domain RY45_11665 PF12111 Polyribonucleotide phosphorylase C terminal RY45_11670 PF01384 Phosphate transporter family RY45_11675 PF00692 dUTPase RY45_11680 PF00485 Phosphoribulokinase / Uridine kinase family RY45_11685 PF10609 NUBPL iron-transfer P-loop NTPase RY45_11690 PF08264 Anticodon-binding domain of tRNA RY45_11690 PF09334 tRNA synthetases class I (M) RY45_11690 PF01588 Putative tRNA binding domain RY45_11695 PF02798 Glutathione S-transferase, N-terminal domain RY45_11695 PF00043 Glutathione S-transferase, C-terminal domain RY45_11700 PF00708 Acylphosphatase RY45_11705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_11705 PF00672 HAMP domain RY45_11710 PF17785 PUA-like domain RY45_11710 PF10672 S-adenosylmethionine-dependent methyltransferase RY45_11730 PF00586 AIR synthase related protein, N-terminal domain RY45_11730 PF02769 AIR synthase related protein, C-terminal domain RY45_11740 PF00753 Metallo-beta-lactamase superfamily RY45_11745 PF00072 Response regulator receiver domain RY45_11750 PF01627 Hpt domain RY45_11750 PF00672 HAMP domain RY45_11750 PF00072 Response regulator receiver domain RY45_11750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RY45_11750 PF00512 His Kinase A (phospho-acceptor) domain RY45_11750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_11755 PF01386 Ribosomal L25p family RY45_11765 PF04408 Helicase associated domain (HA2) RY45_11765 PF11898 Domain of unknown function (DUF3418) RY45_11765 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RY45_11765 PF00271 Helicase conserved C-terminal domain RY45_11765 PF00270 DEAD/DEAH box helicase RY45_11775 PF00196 Bacterial regulatory proteins, luxR family RY45_11775 PF00072 Response regulator receiver domain RY45_11785 PF02575 YbaB/EbfC DNA-binding family RY45_11790 PF12169 DNA polymerase III subunits gamma and tau domain III RY45_11790 PF12170 DNA polymerase III tau subunit V interacting with alpha RY45_11790 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RY45_11795 PF00156 Phosphoribosyl transferase domain RY45_11800 PF04304 Protein of unknown function (DUF454) RY45_11805 PF01207 Dihydrouridine synthase (Dus) RY45_11815 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_11820 PF00570 HRDC domain RY45_11820 PF01612 3'-5' exonuclease RY45_11825 PF13193 AMP-binding enzyme C-terminal domain RY45_11825 PF00501 AMP-binding enzyme RY45_11830 PF12697 Alpha/beta hydrolase family RY45_11830 PF08241 Methyltransferase domain RY45_11840 PF00814 Glycoprotease family RY45_11845 PF04851 Type III restriction enzyme, res subunit RY45_11845 PF13307 Helicase C-terminal domain RY45_11855 PF08029 HisG, C-terminal domain RY45_11855 PF01634 ATP phosphoribosyltransferase RY45_11860 PF00815 Histidinol dehydrogenase RY45_11865 PF00155 Aminotransferase class I and II RY45_11870 PF00475 Imidazoleglycerol-phosphate dehydratase RY45_11870 PF08645 Polynucleotide kinase 3 phosphatase RY45_11875 PF00117 Glutamine amidotransferase class-I RY45_11880 PF00977 Histidine biosynthesis protein RY45_11885 PF00072 Response regulator receiver domain RY45_11895 PF00512 His Kinase A (phospho-acceptor) domain RY45_11895 PF01627 Hpt domain RY45_11895 PF00072 Response regulator receiver domain RY45_11895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_11900 PF00977 Histidine biosynthesis protein RY45_11905 PF01502 Phosphoribosyl-AMP cyclohydrolase RY45_11905 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RY45_11920 PF13193 AMP-binding enzyme C-terminal domain RY45_11920 PF00501 AMP-binding enzyme RY45_11925 PF03606 C4-dicarboxylate anaerobic carrier RY45_11935 PF05433 Glycine zipper 2TM domain RY45_11945 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_11945 PF01799 [2Fe-2S] binding domain RY45_11950 PF00941 FAD binding domain in molybdopterin dehydrogenase RY45_11950 PF03450 CO dehydrogenase flavoprotein C-terminal domain RY45_11955 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RY45_11955 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RY45_11960 PF00860 Permease family RY45_11965 PF01979 Amidohydrolase family RY45_11970 PF00860 Permease family RY45_11975 PF01799 [2Fe-2S] binding domain RY45_11975 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RY45_11975 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RY45_11980 PF00941 FAD binding domain in molybdopterin dehydrogenase RY45_11985 PF01979 Amidohydrolase family RY45_11990 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_11990 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RY45_11995 PF12804 MobA-like NTP transferase domain RY45_12005 PF13478 XdhC Rossmann domain RY45_12005 PF02625 XdhC and CoxI family RY45_12010 PF00892 EamA-like transporter family RY45_12015 PF00696 Amino acid kinase family RY45_12020 PF01979 Amidohydrolase family RY45_12025 PF07687 Peptidase dimerisation domain RY45_12025 PF01546 Peptidase family M20/M25/M40 RY45_12030 PF00291 Pyridoxal-phosphate dependent enzyme RY45_12035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RY45_12035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RY45_12055 PF07152 YaeQ protein RY45_12060 PF00378 Enoyl-CoA hydratase/isomerase RY45_12060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RY45_12060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RY45_12065 PF02803 Thiolase, C-terminal domain RY45_12065 PF00108 Thiolase, N-terminal domain RY45_12070 PF07726 ATPase family associated with various cellular activities (AAA) RY45_12070 PF17863 AAA lid domain RY45_12075 PF01882 Protein of unknown function DUF58 RY45_12100 PF08281 Sigma-70, region 4 RY45_12100 PF04542 Sigma-70 region 2 RY45_12110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RY45_12115 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RY45_12120 PF08668 HDOD domain RY45_12120 PF00563 EAL domain RY45_12125 PF02803 Thiolase, C-terminal domain RY45_12125 PF00108 Thiolase, N-terminal domain RY45_12130 PF00376 MerR family regulatory protein RY45_12130 PF09278 MerR, DNA binding RY45_12135 PF00375 Sodium:dicarboxylate symporter family RY45_12140 PF06865 Pyrimidine/purine nucleoside phosphorylase RY45_12145 PF03315 Serine dehydratase beta chain RY45_12145 PF03313 Serine dehydratase alpha chain RY45_12150 PF03315 Serine dehydratase beta chain RY45_12150 PF03313 Serine dehydratase alpha chain RY45_12155 PF13406 Transglycosylase SLT domain RY45_12160 PF05166 YcgL domain RY45_12165 PF03775 Septum formation inhibitor MinC, C-terminal domain RY45_12165 PF05209 Septum formation inhibitor MinC, N-terminal domain RY45_12170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RY45_12175 PF03776 Septum formation topological specificity factor MinE RY45_12180 PF04269 Protein of unknown function, DUF440 RY45_12185 PF00912 Transglycosylase RY45_12190 PF04269 Protein of unknown function, DUF440 RY45_12200 PF17783 CvfB-like winged helix domain RY45_12200 PF13509 S1 domain RY45_12225 PF02525 Flavodoxin-like fold RY45_12230 PF00892 EamA-like transporter family RY45_12235 PF02222 ATP-grasp domain RY45_12235 PF01370 NAD dependent epimerase/dehydratase family RY45_12240 PF13419 Haloacid dehalogenase-like hydrolase RY45_12250 PF00677 Lumazine binding domain RY45_12255 PF06786 Uncharacterised protein family (UPF0253) RY45_12260 PF01554 MatE RY45_12290 PF00136 DNA polymerase family B RY45_12290 PF03104 DNA polymerase family B, exonuclease domain RY45_12300 PF17151 Periplasmic sensor domain RY45_12300 PF00990 Diguanylate cyclase, GGDEF domain RY45_12315 PF03279 Bacterial lipid A biosynthesis acyltransferase RY45_12320 PF03279 Bacterial lipid A biosynthesis acyltransferase RY45_12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_12330 PF03466 LysR substrate binding domain RY45_12335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RY45_12335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RY45_12340 PF01261 Xylose isomerase-like TIM barrel RY45_12345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_12345 PF03466 LysR substrate binding domain RY45_12355 PF01966 HD domain RY45_12365 PF13188 PAS domain RY45_12365 PF03707 Bacterial signalling protein N terminal repeat RY45_12365 PF00563 EAL domain RY45_12365 PF00990 Diguanylate cyclase, GGDEF domain RY45_12370 PF00232 Glycosyl hydrolase family 1 RY45_12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_12375 PF03466 LysR substrate binding domain RY45_12385 PF00239 Resolvase, N terminal domain RY45_12385 PF02796 Helix-turn-helix domain of resolvase RY45_12395 PF04002 RadC-like JAB domain RY45_12415 PF02384 N-6 DNA Methylase RY45_12430 PF13276 HTH-like domain RY45_12430 PF00665 Integrase core domain RY45_12430 PF13333 Integrase core domain RY45_12440 PF14659 Phage integrase, N-terminal SAM-like domain RY45_12440 PF00589 Phage integrase family RY45_12445 PF01925 Sulfite exporter TauE/SafE RY45_12450 PF13520 Amino acid permease RY45_12460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RY45_12460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RY45_12465 PF00378 Enoyl-CoA hydratase/isomerase RY45_12470 PF00378 Enoyl-CoA hydratase/isomerase RY45_12475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_12475 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_12475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_12480 PF00171 Aldehyde dehydrogenase family RY45_12485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_12485 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_12485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_12490 PF01039 Carboxyl transferase domain RY45_12495 PF00378 Enoyl-CoA hydratase/isomerase RY45_12500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RY45_12500 PF00364 Biotin-requiring enzyme RY45_12500 PF00289 Biotin carboxylase, N-terminal domain RY45_12500 PF02785 Biotin carboxylase C-terminal domain RY45_12505 PF00682 HMGL-like RY45_12510 PF00376 MerR family regulatory protein RY45_12510 PF09278 MerR, DNA binding RY45_12525 PF01184 GPR1/FUN34/yaaH family RY45_12530 PF06167 Glucose-regulated metallo-peptidase M90 RY45_12540 PF01235 Sodium:alanine symporter family RY45_12565 PF00378 Enoyl-CoA hydratase/isomerase RY45_12580 PF04341 Protein of unknown function, DUF485 RY45_12585 PF00474 Sodium:solute symporter family RY45_12590 PF00005 ABC transporter RY45_12590 PF12848 ABC transporter RY45_12595 PF13145 PPIC-type PPIASE domain RY45_12605 PF00004 ATPase family associated with various cellular activities (AAA) RY45_12605 PF05362 Lon protease (S16) C-terminal proteolytic domain RY45_12605 PF02190 ATP-dependent protease La (LON) substrate-binding domain RY45_12610 PF06689 ClpX C4-type zinc finger RY45_12610 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_12610 PF07724 AAA domain (Cdc48 subfamily) RY45_12615 PF00574 Clp protease RY45_12620 PF05698 Bacterial trigger factor protein (TF) C-terminus RY45_12620 PF05697 Bacterial trigger factor protein (TF) RY45_12620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_12635 PF12704 MacB-like periplasmic core domain RY45_12635 PF02687 FtsX-like permease family RY45_12640 PF00005 ABC transporter RY45_12645 PF12704 MacB-like periplasmic core domain RY45_12645 PF02687 FtsX-like permease family RY45_12655 PF00270 DEAD/DEAH box helicase RY45_12655 PF02559 CarD-like/TRCF domain RY45_12655 PF00271 Helicase conserved C-terminal domain RY45_12655 PF17757 UvrB interaction domain RY45_12655 PF03461 TRCF domain RY45_12660 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RY45_12665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_12670 PF00892 EamA-like transporter family RY45_12680 PF00300 Histidine phosphatase superfamily (branch 1) RY45_12685 PF00675 Insulinase (Peptidase family M16) RY45_12685 PF05193 Peptidase M16 inactive domain RY45_12690 PF05724 Thiopurine S-methyltransferase (TPMT) RY45_12705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RY45_12705 PF12833 Helix-turn-helix domain RY45_12705 PF02805 Metal binding domain of Ada RY45_12705 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RY45_12720 PF00958 GMP synthase C terminal domain RY45_12720 PF00117 Glutamine amidotransferase class-I RY45_12720 PF02540 NAD synthase RY45_12725 PF00571 CBS domain RY45_12725 PF00478 IMP dehydrogenase / GMP reductase domain RY45_12730 PF02705 K+ potassium transporter RY45_12740 PF01618 MotA/TolQ/ExbB proton channel family RY45_12745 PF02472 Biopolymer transport protein ExbD/TolR RY45_12750 PF00892 EamA-like transporter family RY45_12755 PF02601 Exonuclease VII, large subunit RY45_12755 PF13742 OB-fold nucleic acid binding domain RY45_12760 PF04055 Radical SAM superfamily RY45_12765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_12765 PF00672 HAMP domain RY45_12770 PF00793 DAHP synthetase I family RY45_12775 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RY45_12780 PF00266 Aminotransferase class-V RY45_12785 PF00766 Electron transfer flavoprotein FAD-binding domain RY45_12785 PF01012 Electron transfer flavoprotein domain RY45_12790 PF01012 Electron transfer flavoprotein domain RY45_12800 PF01544 CorA-like Mg2+ transporter protein RY45_12805 PF11143 Protein of unknown function (DUF2919) RY45_12820 PF00593 TonB dependent receptor RY45_12820 PF07715 TonB-dependent Receptor Plug Domain RY45_12825 PF01032 FecCD transport family RY45_12830 PF01032 FecCD transport family RY45_12835 PF00005 ABC transporter RY45_12840 PF01648 4'-phosphopantetheinyl transferase superfamily RY45_12840 PF17837 4'-phosphopantetheinyl transferase N-terminal domain RY45_12845 PF01497 Periplasmic binding protein RY45_12850 PF00501 AMP-binding enzyme RY45_12850 PF00668 Condensation domain RY45_12850 PF00550 Phosphopantetheine attachment site RY45_12850 PF13193 AMP-binding enzyme C-terminal domain RY45_12850 PF00975 Thioesterase domain RY45_12855 PF00550 Phosphopantetheine attachment site RY45_12855 PF07993 Male sterility protein RY45_12855 PF00668 Condensation domain RY45_12855 PF13193 AMP-binding enzyme C-terminal domain RY45_12855 PF00501 AMP-binding enzyme RY45_12865 PF13193 AMP-binding enzyme C-terminal domain RY45_12865 PF00501 AMP-binding enzyme RY45_12865 PF00668 Condensation domain RY45_12865 PF00550 Phosphopantetheine attachment site RY45_12865 PF00975 Thioesterase domain RY45_12870 PF00550 Phosphopantetheine attachment site RY45_12870 PF00857 Isochorismatase family RY45_12875 PF13193 AMP-binding enzyme C-terminal domain RY45_12875 PF00501 AMP-binding enzyme RY45_12880 PF00425 chorismate binding enzyme RY45_12885 PF07273 Protein of unknown function (DUF1439) RY45_12895 PF00483 Nucleotidyl transferase RY45_12900 PF00563 EAL domain RY45_12900 PF03707 Bacterial signalling protein N terminal repeat RY45_12900 PF00990 Diguanylate cyclase, GGDEF domain RY45_12915 PF00294 pfkB family carbohydrate kinase RY45_12925 PF00762 Ferrochelatase RY45_12930 PF05191 Adenylate kinase, active site lid RY45_12935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_12935 PF00183 Hsp90 protein RY45_12940 PF02132 RecR protein RY45_12940 PF13662 Toprim domain RY45_12945 PF02634 FdhD/NarQ family RY45_12950 PF01590 GAF domain RY45_12950 PF02954 Bacterial regulatory protein, Fis family RY45_12950 PF00158 Sigma-54 interaction domain RY45_12960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_12960 PF00384 Molybdopterin oxidoreductase RY45_12960 PF01568 Molydopterin dinucleotide binding domain RY45_12965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_12965 PF00384 Molybdopterin oxidoreductase RY45_12965 PF01568 Molydopterin dinucleotide binding domain RY45_12970 PF13247 4Fe-4S dicluster domain RY45_12970 PF12800 4Fe-4S binding domain RY45_12975 PF02705 K+ potassium transporter RY45_12980 PF00037 4Fe-4S binding domain RY45_12980 PF12798 4Fe-4S binding domain RY45_12985 PF00361 Proton-conducting membrane transporter RY45_12990 PF00146 NADH dehydrogenase RY45_12995 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RY45_12995 PF00374 Nickel-dependent hydrogenase RY45_12995 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RY45_13000 PF12838 4Fe-4S dicluster domain RY45_13005 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RY45_13010 PF07450 Formate hydrogenlyase maturation protein HycH RY45_13015 PF01750 Hydrogenase maturation protease RY45_13020 PF03841 L-seryl-tRNA selenium transferase RY45_13020 PF12390 Selenocysteine synthase N terminal RY45_13025 PF09106 Elongation factor SelB, winged helix RY45_13025 PF09107 Elongation factor SelB, winged helix RY45_13025 PF03144 Elongation factor Tu domain 2 RY45_13025 PF09105 Elongation factor SelB, winged helix RY45_13025 PF00009 Elongation factor Tu GTP binding domain RY45_13030 PF00708 Acylphosphatase RY45_13030 PF17788 HypF Kae1-like domain RY45_13030 PF01300 Telomere recombination RY45_13030 PF07503 HypF finger RY45_13035 PF01455 HupF/HypC family RY45_13040 PF01924 Hydrogenase formation hypA family RY45_13045 PF02769 AIR synthase related protein, C-terminal domain RY45_13045 PF00586 AIR synthase related protein, N-terminal domain RY45_13050 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RY45_13055 PF02492 CobW/HypB/UreG, nucleotide-binding domain RY45_13060 PF00005 ABC transporter RY45_13060 PF08402 TOBE domain RY45_13065 PF00005 ABC transporter RY45_13070 PF00528 Binding-protein-dependent transport system inner membrane component RY45_13070 PF12911 N-terminal TM domain of oligopeptide transport permease C RY45_13075 PF00528 Binding-protein-dependent transport system inner membrane component RY45_13080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_13090 PF01750 Hydrogenase maturation protease RY45_13095 PF00374 Nickel-dependent hydrogenase RY45_13100 PF03916 Polysulphide reductase, NrfD RY45_13105 PF13247 4Fe-4S dicluster domain RY45_13110 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RY45_13110 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RY45_13115 PF00072 Response regulator receiver domain RY45_13125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_13125 PF09078 CheY binding RY45_13125 PF01584 CheW-like domain RY45_13125 PF01627 Hpt domain RY45_13125 PF02895 Signal transducing histidine kinase, homodimeric domain RY45_13130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13130 PF00672 HAMP domain RY45_13130 PF17202 Single cache domain 3 RY45_13135 PF01584 CheW-like domain RY45_13140 PF03705 CheR methyltransferase, all-alpha domain RY45_13140 PF01739 CheR methyltransferase, SAM binding domain RY45_13145 PF01339 CheB methylesterase RY45_13145 PF00072 Response regulator receiver domain RY45_13150 PF03707 Bacterial signalling protein N terminal repeat RY45_13150 PF00990 Diguanylate cyclase, GGDEF domain RY45_13150 PF00563 EAL domain RY45_13155 PF00672 HAMP domain RY45_13155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13155 PF12729 Four helix bundle sensory module for signal transduction RY45_13160 PF00842 Alanine racemase, C-terminal domain RY45_13160 PF01168 Alanine racemase, N-terminal domain RY45_13180 PF00916 Sulfate permease family RY45_13180 PF01740 STAS domain RY45_13195 PF03350 Uncharacterized protein family, UPF0114 RY45_13210 PF03239 Iron permease FTR1 family RY45_13215 PF01593 Flavin containing amine oxidoreductase RY45_13230 PF07690 Major Facilitator Superfamily RY45_13240 PF00005 ABC transporter RY45_13270 PF01565 FAD binding domain RY45_13270 PF02913 FAD linked oxidases, C-terminal domain RY45_13275 PF02589 LUD domain RY45_13280 PF13183 4Fe-4S dicluster domain RY45_13280 PF02589 LUD domain RY45_13280 PF11870 Domain of unknown function (DUF3390) RY45_13285 PF02754 Cysteine-rich domain RY45_13290 PF02652 L-lactate permease RY45_13295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_13295 PF03466 LysR substrate binding domain RY45_13305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_13310 PF00561 alpha/beta hydrolase fold RY45_13335 PF01625 Peptide methionine sulfoxide reductase RY45_13340 PF00583 Acetyltransferase (GNAT) family RY45_13340 PF00696 Amino acid kinase family RY45_13345 PF01842 ACT domain RY45_13345 PF00696 Amino acid kinase family RY45_13355 PF00884 Sulfatase RY45_13360 PF17676 LD-carboxypeptidase C-terminal domain RY45_13360 PF02016 LD-carboxypeptidase N-terminal domain RY45_13365 PF01734 Patatin-like phospholipase RY45_13370 PF17179 4Fe-4S dicluster domain RY45_13375 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RY45_13375 PF00175 Oxidoreductase NAD-binding domain RY45_13380 PF13187 4Fe-4S dicluster domain RY45_13380 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_13380 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_13385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_13385 PF14824 Sirohaem biosynthesis protein central RY45_13385 PF10414 Sirohaem synthase dimerisation region RY45_13395 PF01906 Putative heavy-metal-binding RY45_13415 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_13420 PF05728 Uncharacterised protein family (UPF0227) RY45_13425 PF00860 Permease family RY45_13430 PF01432 Peptidase family M3 RY45_13430 PF08439 Oligopeptidase F RY45_13435 PF08439 Oligopeptidase F RY45_13435 PF01432 Peptidase family M3 RY45_13440 PF05661 Protein of unknown function (DUF808) RY45_13450 PF07549 SecD/SecF GG Motif RY45_13450 PF02355 Protein export membrane protein RY45_13455 PF07549 SecD/SecF GG Motif RY45_13455 PF13721 SecD export protein N-terminal TM region RY45_13455 PF02355 Protein export membrane protein RY45_13490 PF01230 HIT domain RY45_13495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13495 PF00672 HAMP domain RY45_13505 PF01979 Amidohydrolase family RY45_13520 PF00375 Sodium:dicarboxylate symporter family RY45_13530 PF01168 Alanine racemase, N-terminal domain RY45_13530 PF00842 Alanine racemase, C-terminal domain RY45_13535 PF03741 Integral membrane protein TerC family RY45_13540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_13540 PF00005 ABC transporter RY45_13545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_13545 PF00005 ABC transporter RY45_13550 PF12911 N-terminal TM domain of oligopeptide transport permease C RY45_13550 PF00528 Binding-protein-dependent transport system inner membrane component RY45_13555 PF00528 Binding-protein-dependent transport system inner membrane component RY45_13560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_13565 PF01914 MarC family integral membrane protein RY45_13575 PF00171 Aldehyde dehydrogenase family RY45_13575 PF00465 Iron-containing alcohol dehydrogenase RY45_13580 PF01966 HD domain RY45_13585 PF06580 Histidine kinase RY45_13585 PF07694 5TMR of 5TMR-LYT RY45_13590 PF04397 LytTr DNA-binding domain RY45_13590 PF00072 Response regulator receiver domain RY45_13595 PF02554 Carbon starvation protein CstA RY45_13600 PF11742 Protein of unknown function (DUF3302) RY45_13605 PF00529 HlyD membrane-fusion protein of T1SS RY45_13605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_13610 PF00271 Helicase conserved C-terminal domain RY45_13610 PF04851 Type III restriction enzyme, res subunit RY45_13615 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RY45_13620 PF00462 Glutaredoxin RY45_13630 PF00155 Aminotransferase class I and II RY45_13635 PF03606 C4-dicarboxylate anaerobic carrier RY45_13640 PF07055 Enoyl reductase FAD binding domain RY45_13640 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RY45_13640 PF12241 Trans-2-enoyl-CoA reductase catalytic region RY45_13645 PF08447 PAS fold RY45_13645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13645 PF13426 PAS domain RY45_13655 PF00892 EamA-like transporter family RY45_13660 PF02508 Rnf-Nqr subunit, membrane protein RY45_13665 PF04060 Putative Fe-S cluster RY45_13670 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RY45_13670 PF12838 4Fe-4S dicluster domain RY45_13670 PF10531 SLBB domain RY45_13670 PF13375 RnfC Barrel sandwich hybrid domain RY45_13675 PF03116 NQR2, RnfD, RnfE family RY45_13680 PF04205 FMN-binding domain RY45_13685 PF02508 Rnf-Nqr subunit, membrane protein RY45_13690 PF00730 HhH-GPD superfamily base excision DNA repair protein RY45_13690 PF00633 Helix-hairpin-helix motif RY45_13690 PF10576 Iron-sulfur binding domain of endonuclease III RY45_13695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_13700 PF18393 MotY N-terminal domain RY45_13700 PF00691 OmpA family RY45_13705 PF00672 HAMP domain RY45_13705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13705 PF12729 Four helix bundle sensory module for signal transduction RY45_13710 PF00929 Exonuclease RY45_13715 PF03553 Na+/H+ antiporter family RY45_13715 PF13726 Na+-H+ antiporter family RY45_13720 PF03880 DbpA RNA binding domain RY45_13720 PF00270 DEAD/DEAH box helicase RY45_13720 PF00271 Helicase conserved C-terminal domain RY45_13725 PF03061 Thioesterase superfamily RY45_13735 PF01565 FAD binding domain RY45_13735 PF02913 FAD linked oxidases, C-terminal domain RY45_13735 PF13183 4Fe-4S dicluster domain RY45_13745 PF03741 Integral membrane protein TerC family RY45_13745 PF03471 Transporter associated domain RY45_13750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RY45_13755 PF00962 Adenosine/AMP deaminase RY45_13760 PF13344 Haloacid dehalogenase-like hydrolase RY45_13765 PF00999 Sodium/hydrogen exchanger family RY45_13765 PF02254 TrkA-N domain RY45_13775 PF13537 Glutamine amidotransferase domain RY45_13775 PF00733 Asparagine synthase RY45_13785 PF00043 Glutathione S-transferase, C-terminal domain RY45_13785 PF13417 Glutathione S-transferase, N-terminal domain RY45_13790 PF14497 Glutathione S-transferase, C-terminal domain RY45_13790 PF02798 Glutathione S-transferase, N-terminal domain RY45_13800 PF04209 homogentisate 1,2-dioxygenase RY45_13805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_13815 PF00849 RNA pseudouridylate synthase RY45_13820 PF00563 EAL domain RY45_13820 PF13426 PAS domain RY45_13820 PF00990 Diguanylate cyclase, GGDEF domain RY45_13825 PF08447 PAS fold RY45_13825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13835 PF09924 Uncharacterised conserved protein (DUF2156) RY45_13835 PF03706 Lysylphosphatidylglycerol synthase TM region RY45_13840 PF08019 Phosphoethanolamine transferase EptA/EptB RY45_13840 PF00884 Sulfatase RY45_13855 PF02108 Flagellar assembly protein FliH RY45_13865 PF01514 Secretory protein of YscJ/FliF family RY45_13870 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI RY45_13875 PF09025 YopR, type III needle-polymerisation regulator RY45_13880 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) RY45_13885 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF RY45_13895 PF16693 Inner membrane component of T3SS, periplasmic domain RY45_13895 PF16697 Inner membrane component of T3SS, cytoplasmic domain RY45_13915 PF12833 Helix-turn-helix domain RY45_13930 PF05932 Tir chaperone protein (CesT) family RY45_13935 PF05844 YopD protein RY45_13940 PF04888 Secretion system effector C (SseC) like family RY45_13945 PF07720 Tetratricopeptide repeat RY45_13950 PF04792 V antigen (LcrV) protein RY45_13960 PF09621 Type III secretion system regulator (LcrR) RY45_13965 PF00771 FHIPEP family RY45_13975 PF09474 Type III secretion system YscX (type_III_YscX) RY45_13985 PF09059 TyeA RY45_13990 PF07201 HrpJ-like domain RY45_13995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_13995 PF18269 T3SS EscN ATPase C-terminal domain RY45_13995 PF02874 ATP synthase alpha/beta family, beta-barrel domain RY45_14005 PF02120 Flagellar hook-length control protein FliK RY45_14010 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RY45_14015 PF00813 FliP family RY45_14020 PF01313 Bacterial export proteins, family 3 RY45_14025 PF01311 Bacterial export proteins, family 1 RY45_14030 PF01312 FlhB HrpN YscU SpaS Family RY45_14045 PF01027 Inhibitor of apoptosis-promoting Bax1 RY45_14050 PF12805 FUSC-like inner membrane protein yccS RY45_14055 PF04358 DsrC like protein RY45_14060 PF05036 Sporulation related domain RY45_14065 PF08245 Mur ligase middle domain RY45_14065 PF02875 Mur ligase family, glutamate ligase domain RY45_14070 PF01039 Carboxyl transferase domain RY45_14070 PF17848 Acetyl-coA carboxylase zinc finger domain RY45_14075 PF01416 tRNA pseudouridine synthase RY45_14085 PF02774 Semialdehyde dehydrogenase, dimerisation domain RY45_14085 PF01118 Semialdehyde dehydrogenase, NAD binding domain RY45_14090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_14090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_14090 PF11890 Domain of unknown function (DUF3410) RY45_14095 PF01569 PAP2 superfamily RY45_14100 PF03180 NLPA lipoprotein RY45_14125 PF00082 Subtilase family RY45_14125 PF01483 Proprotein convertase P-domain RY45_14135 PF14310 Fibronectin type III-like domain RY45_14135 PF01915 Glycosyl hydrolase family 3 C-terminal domain RY45_14135 PF00933 Glycosyl hydrolase family 3 N terminal domain RY45_14145 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RY45_14145 PF00391 PEP-utilising enzyme, mobile domain RY45_14145 PF02896 PEP-utilising enzyme, TIM barrel domain RY45_14150 PF03618 Kinase/pyrophosphorylase RY45_14160 PF00324 Amino acid permease RY45_14205 PF03412 Peptidase C39 family RY45_14205 PF00005 ABC transporter RY45_14205 PF00664 ABC transporter transmembrane region RY45_14210 PF04055 Radical SAM superfamily RY45_14210 PF16199 Radical_SAM C-terminal domain RY45_14220 PF00310 Glutamine amidotransferases class-II RY45_14220 PF01493 GXGXG motif RY45_14220 PF04898 Glutamate synthase central domain RY45_14220 PF01645 Conserved region in glutamate synthase RY45_14225 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RY45_14225 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_14235 PF00528 Binding-protein-dependent transport system inner membrane component RY45_14240 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_14255 PF00376 MerR family regulatory protein RY45_14255 PF09278 MerR, DNA binding RY45_14270 PF14521 Lysine-specific metallo-endopeptidase RY45_14280 PF00271 Helicase conserved C-terminal domain RY45_14280 PF00270 DEAD/DEAH box helicase RY45_14285 PF13302 Acetyltransferase (GNAT) domain RY45_14305 PF08378 Nuclease-related domain RY45_14315 PF07759 Protein of unknown function (DUF1615) RY45_14320 PF08502 LeuA allosteric (dimerisation) domain RY45_14320 PF00682 HMGL-like RY45_14325 PF02142 MGS-like domain RY45_14325 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RY45_14325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RY45_14330 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RY45_14330 PF00117 Glutamine amidotransferase class-I RY45_14335 PF05173 Dihydrodipicolinate reductase, C-terminus RY45_14335 PF01113 Dihydrodipicolinate reductase, N-terminus RY45_14345 PF01812 5-formyltetrahydrofolate cyclo-ligase family RY45_14350 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RY45_14355 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RY45_14360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_14360 PF01842 ACT domain RY45_14360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_14365 PF01219 Prokaryotic diacylglycerol kinase RY45_14370 PF00793 DAHP synthetase I family RY45_14375 PF00583 Acetyltransferase (GNAT) family RY45_14380 PF00005 ABC transporter RY45_14385 PF01032 FecCD transport family RY45_14390 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_14390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_14390 PF00989 PAS fold RY45_14390 PF00512 His Kinase A (phospho-acceptor) domain RY45_14390 PF00072 Response regulator receiver domain RY45_14390 PF01627 Hpt domain RY45_14400 PF00437 Type II/IV secretion system protein RY45_14405 PF00483 Nucleotidyl transferase RY45_14420 PF02421 Ferrous iron transport protein B RY45_14420 PF07670 Nucleoside recognition RY45_14420 PF07664 Ferrous iron transport protein B C terminus RY45_14430 PF01253 Translation initiation factor SUI1 RY45_14435 PF01169 Uncharacterized protein family UPF0016 RY45_14465 PF00990 Diguanylate cyclase, GGDEF domain RY45_14465 PF13185 GAF domain RY45_14480 PF09190 DALR domain RY45_14480 PF01406 tRNA synthetases class I (C) catalytic domain RY45_14485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RY45_14495 PF00149 Calcineurin-like phosphoesterase RY45_14500 PF03916 Polysulphide reductase, NrfD RY45_14505 PF13247 4Fe-4S dicluster domain RY45_14505 PF00037 4Fe-4S binding domain RY45_14525 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RY45_14530 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB RY45_14535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_14535 PF00672 HAMP domain RY45_14540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_14540 PF08447 PAS fold RY45_14540 PF13426 PAS domain RY45_14560 PF01066 CDP-alcohol phosphatidyltransferase RY45_14565 PF08459 UvrC Helix-hairpin-helix N-terminal RY45_14565 PF01541 GIY-YIG catalytic domain RY45_14565 PF02151 UvrB/uvrC motif RY45_14570 PF00196 Bacterial regulatory proteins, luxR family RY45_14570 PF00072 Response regulator receiver domain RY45_14575 PF02348 Cytidylyltransferase RY45_14580 PF03966 Trm112p-like protein RY45_14585 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RY45_14590 PF00664 ABC transporter transmembrane region RY45_14590 PF00005 ABC transporter RY45_14595 PF00753 Metallo-beta-lactamase superfamily RY45_14595 PF03772 Competence protein RY45_14610 PF05872 Bacterial protein of unknown function (DUF853) RY45_14615 PF06291 Bor protein RY45_14620 PF06291 Bor protein RY45_14630 PF06406 StbA protein RY45_14635 PF00561 alpha/beta hydrolase fold RY45_14640 PF03459 TOBE domain RY45_14640 PF00005 ABC transporter RY45_14645 PF00528 Binding-protein-dependent transport system inner membrane component RY45_14655 PF02391 MoaE protein RY45_14660 PF02597 ThiS family RY45_14665 PF01967 MoaC family RY45_14670 PF00994 Probable molybdopterin binding domain RY45_14675 PF03264 NapC/NirT cytochrome c family, N-terminal region RY45_14680 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) RY45_14685 PF13237 4Fe-4S dicluster domain RY45_14685 PF12801 4Fe-4S binding domain RY45_14690 PF12800 4Fe-4S binding domain RY45_14690 PF12838 4Fe-4S dicluster domain RY45_14695 PF00384 Molybdopterin oxidoreductase RY45_14695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_14695 PF10518 TAT (twin-arginine translocation) pathway signal sequence RY45_14695 PF01568 Molydopterin dinucleotide binding domain RY45_14705 PF00037 4Fe-4S binding domain RY45_14705 PF13187 4Fe-4S dicluster domain RY45_14705 PF12800 4Fe-4S binding domain RY45_14710 PF04055 Radical SAM superfamily RY45_14710 PF06463 Molybdenum Cofactor Synthesis C RY45_14715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_14715 PF07730 Histidine kinase RY45_14715 PF00672 HAMP domain RY45_14715 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RY45_14720 PF00072 Response regulator receiver domain RY45_14720 PF00196 Bacterial regulatory proteins, luxR family RY45_14730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_14730 PF00512 His Kinase A (phospho-acceptor) domain RY45_14730 PF00072 Response regulator receiver domain RY45_14730 PF09456 RcsC Alpha-Beta-Loop (ABL) RY45_14740 PF01933 Uncharacterised protein family UPF0052 RY45_14750 PF13230 Glutamine amidotransferases class-II RY45_14755 PF13580 SIS domain RY45_14760 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_14760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_14760 PF09317 Domain of unknown function (DUF1974) RY45_14760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_14765 PF11849 Domain of unknown function (DUF3369) RY45_14770 PF00571 CBS domain RY45_14770 PF03448 MgtE intracellular N domain RY45_14770 PF01769 Divalent cation transporter RY45_14775 PF00669 Bacterial flagellin N-terminal helical region RY45_14780 PF00460 Flagella basal body rod protein RY45_14780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_14785 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RY45_14785 PF10135 Rod binding protein RY45_14790 PF02119 Flagellar P-ring protein RY45_14795 PF02107 Flagellar L-ring protein RY45_14800 PF00460 Flagella basal body rod protein RY45_14800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_14805 PF00460 Flagella basal body rod protein RY45_14805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_14810 PF07559 Flagellar basal body protein FlaE RY45_14810 PF00460 Flagella basal body rod protein RY45_14810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_14820 PF00460 Flagella basal body rod protein RY45_14820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_14825 PF00460 Flagella basal body rod protein RY45_14830 PF03705 CheR methyltransferase, all-alpha domain RY45_14830 PF01739 CheR methyltransferase, SAM binding domain RY45_14835 PF00072 Response regulator receiver domain RY45_14835 PF01584 CheW-like domain RY45_14840 PF13144 Chaperone for flagella basal body P-ring formation RY45_14855 PF12850 Calcineurin-like phosphoesterase superfamily domain RY45_14860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_14870 PF01479 S4 domain RY45_14870 PF00849 RNA pseudouridylate synthase RY45_14875 PF11871 Domain of unknown function (DUF3391) RY45_14875 PF01966 HD domain RY45_14885 PF00923 Transaldolase/Fructose-6-phosphate aldolase RY45_14890 PF04055 Radical SAM superfamily RY45_14900 PF00455 DeoR C terminal sensor domain RY45_14900 PF08220 DeoR-like helix-turn-helix domain RY45_14905 PF00892 EamA-like transporter family RY45_14910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_14935 PF00313 'Cold-shock' DNA-binding domain RY45_14940 PF02817 e3 binding domain RY45_14940 PF00364 Biotin-requiring enzyme RY45_14940 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RY45_14945 PF02779 Transketolase, pyrimidine binding domain RY45_14945 PF02780 Transketolase, C-terminal domain RY45_14950 PF00676 Dehydrogenase E1 component RY45_14955 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RY45_14965 PF05472 DNA replication terminus site-binding protein (Ter protein) RY45_14970 PF00176 SNF2 family N-terminal domain RY45_14970 PF04434 SWIM zinc finger RY45_14970 PF00271 Helicase conserved C-terminal domain RY45_14975 PF04337 Protein of unknown function, DUF480 RY45_14985 PF02706 Chain length determinant protein RY45_14990 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RY45_14995 PF00483 Nucleotidyl transferase RY45_15000 PF04321 RmlD substrate binding domain RY45_15005 PF16363 GDP-mannose 4,6 dehydratase RY45_15010 PF02719 Polysaccharide biosynthesis protein RY45_15015 PF02397 Bacterial sugar transferase RY45_15020 PF00534 Glycosyl transferases group 1 RY45_15020 PF13477 Glycosyl transferase 4-like RY45_15025 PF13537 Glutamine amidotransferase domain RY45_15025 PF00733 Asparagine synthase RY45_15030 PF01370 NAD dependent epimerase/dehydratase family RY45_15035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RY45_15035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RY45_15035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RY45_15045 PF02321 Outer membrane efflux protein RY45_15050 PF00873 AcrB/AcrD/AcrF family RY45_15055 PF00529 HlyD membrane-fusion protein of T1SS RY45_15055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_15060 PF08361 MAATS-type transcriptional repressor, C-terminal region RY45_15060 PF00440 Bacterial regulatory proteins, tetR family RY45_15085 PF00849 RNA pseudouridylate synthase RY45_15085 PF01479 S4 domain RY45_15090 PF04079 Segregation and condensation complex subunit ScpB RY45_15095 PF02616 Segregation and condensation protein ScpA RY45_15100 PF01300 Telomere recombination RY45_15105 PF02811 PHP domain RY45_15110 PF00425 chorismate binding enzyme RY45_15110 PF04715 Anthranilate synthase component I, N terminal region RY45_15115 PF02885 Glycosyl transferase family, helical bundle domain RY45_15115 PF00591 Glycosyl transferase family, a/b domain RY45_15115 PF00117 Glutamine amidotransferase class-I RY45_15120 PF02885 Glycosyl transferase family, helical bundle domain RY45_15120 PF00591 Glycosyl transferase family, a/b domain RY45_15125 PF00218 Indole-3-glycerol phosphate synthase RY45_15125 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RY45_15130 PF00291 Pyridoxal-phosphate dependent enzyme RY45_15135 PF00290 Tryptophan synthase alpha chain RY45_15145 PF04307 LexA-binding, inner membrane-associated putative hydrolase RY45_15165 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_15165 PF07670 Nucleoside recognition RY45_15165 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_15180 PF05656 Protein of unknown function (DUF805) RY45_15190 PF07690 Major Facilitator Superfamily RY45_15195 PF01040 UbiA prenyltransferase family RY45_15200 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RY45_15205 PF00510 Cytochrome c oxidase subunit III RY45_15210 PF00115 Cytochrome C and Quinol oxidase polypeptide I RY45_15215 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RY45_15215 PF06481 COX Aromatic Rich Motif RY45_15225 PF00034 Cytochrome c RY45_15225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RY45_15235 PF01156 Inosine-uridine preferring nucleoside hydrolase RY45_15250 PF00127 Copper binding proteins, plastocyanin/azurin family RY45_15255 PF02424 ApbE family RY45_15260 PF07690 Major Facilitator Superfamily RY45_15265 PF00072 Response regulator receiver domain RY45_15265 PF00486 Transcriptional regulatory protein, C terminal RY45_15275 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_15280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_15285 PF00873 AcrB/AcrD/AcrF family RY45_15295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_15295 PF00529 HlyD membrane-fusion protein of T1SS RY45_15300 PF00873 AcrB/AcrD/AcrF family RY45_15320 PF03099 Biotin/lipoate A/B protein ligase family RY45_15320 PF10437 Bacterial lipoate protein ligase C-terminus RY45_15325 PF03707 Bacterial signalling protein N terminal repeat RY45_15325 PF00563 EAL domain RY45_15325 PF00990 Diguanylate cyclase, GGDEF domain RY45_15330 PF00873 AcrB/AcrD/AcrF family RY45_15345 PF04143 Sulphur transport RY45_15350 PF01022 Bacterial regulatory protein, arsR family RY45_15365 PF02308 MgtC family RY45_15370 PF00684 DnaJ central domain RY45_15370 PF01556 DnaJ C terminal domain RY45_15370 PF00226 DnaJ domain RY45_15375 PF00012 Hsp70 protein RY45_15380 PF01025 GrpE RY45_15385 PF01513 ATP-NAD kinase RY45_15390 PF02463 RecF/RecN/SMC N terminal domain RY45_15395 PF02833 DHHA2 domain RY45_15395 PF01368 DHH family RY45_15405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_15410 PF02687 FtsX-like permease family RY45_15410 PF00005 ABC transporter RY45_15410 PF12704 MacB-like periplasmic core domain RY45_15415 PF02321 Outer membrane efflux protein RY45_15420 PF08021 Siderophore-interacting FAD-binding domain RY45_15420 PF04954 Siderophore-interacting protein RY45_15430 PF00793 DAHP synthetase I family RY45_15435 PF00816 H-NS histone family RY45_15450 PF05656 Protein of unknown function (DUF805) RY45_15465 PF01266 FAD dependent oxidoreductase RY45_15470 PF01381 Helix-turn-helix RY45_15470 PF07883 Cupin domain RY45_15475 PF00171 Aldehyde dehydrogenase family RY45_15480 PF00202 Aminotransferase class-III RY45_15485 PF00324 Amino acid permease RY45_15495 PF13520 Amino acid permease RY45_15505 PF02690 Na+/Pi-cotransporter RY45_15510 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RY45_15510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_15515 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RY45_15520 PF01627 Hpt domain RY45_15520 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_15520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_15520 PF00072 Response regulator receiver domain RY45_15520 PF00989 PAS fold RY45_15520 PF00512 His Kinase A (phospho-acceptor) domain RY45_15535 PF01048 Phosphorylase superfamily RY45_15560 PF00005 ABC transporter RY45_15560 PF12848 ABC transporter RY45_15570 PF00291 Pyridoxal-phosphate dependent enzyme RY45_15570 PF14821 Threonine synthase N terminus RY45_15575 PF00288 GHMP kinases N terminal domain RY45_15575 PF08544 GHMP kinases C terminal RY45_15580 PF03447 Homoserine dehydrogenase, NAD binding domain RY45_15580 PF00742 Homoserine dehydrogenase RY45_15580 PF13840 ACT domain RY45_15580 PF01842 ACT domain RY45_15580 PF00696 Amino acid kinase family RY45_15585 PF00588 SpoU rRNA Methylase family RY45_15590 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) RY45_15605 PF03737 Aldolase/RraA RY45_15615 PF00486 Transcriptional regulatory protein, C terminal RY45_15615 PF00072 Response regulator receiver domain RY45_15630 PF00664 ABC transporter transmembrane region RY45_15630 PF00005 ABC transporter RY45_15635 PF00005 ABC transporter RY45_15635 PF00664 ABC transporter transmembrane region RY45_15655 PF18389 TrmO C-terminal domain RY45_15655 PF01980 tRNA-methyltransferase O RY45_15660 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RY45_15660 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RY45_15670 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_15670 PF02861 Clp amino terminal domain, pathogenicity island component RY45_15670 PF00004 ATPase family associated with various cellular activities (AAA) RY45_15670 PF17871 AAA lid domain RY45_15670 PF07724 AAA domain (Cdc48 subfamily) RY45_15675 PF00291 Pyridoxal-phosphate dependent enzyme RY45_15680 PF00381 PTS HPr component phosphorylation site RY45_15685 PF05524 PEP-utilising enzyme, N-terminal RY45_15685 PF02896 PEP-utilising enzyme, TIM barrel domain RY45_15685 PF00391 PEP-utilising enzyme, mobile domain RY45_15690 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RY45_15695 PF00990 Diguanylate cyclase, GGDEF domain RY45_15695 PF00072 Response regulator receiver domain RY45_15705 PF01292 Prokaryotic cytochrome b561 RY45_15720 PF13476 AAA domain RY45_15725 PF00149 Calcineurin-like phosphoesterase RY45_15725 PF12320 Type 5 capsule protein repressor C-terminal domain RY45_15735 PF04381 Putative exonuclease, RdgC RY45_15745 PF02254 TrkA-N domain RY45_15745 PF00999 Sodium/hydrogen exchanger family RY45_15750 PF04151 Bacterial pre-peptidase C-terminal domain RY45_15750 PF04389 Peptidase family M28 RY45_15760 PF00224 Pyruvate kinase, barrel domain RY45_15760 PF02887 Pyruvate kinase, alpha/beta domain RY45_15765 PF12794 Mechanosensitive ion channel inner membrane domain 1 RY45_15765 PF00924 Mechanosensitive ion channel RY45_15765 PF12795 Mechanosensitive ion channel porin domain RY45_15775 PF10282 Lactonase, 7-bladed beta-propeller RY45_15780 PF00860 Permease family RY45_15785 PF01458 Uncharacterized protein family (UPF0051) RY45_15795 PF00390 Malic enzyme, N-terminal domain RY45_15795 PF03949 Malic enzyme, NAD binding domain RY45_15800 PF00072 Response regulator receiver domain RY45_15810 PF13247 4Fe-4S dicluster domain RY45_15815 PF12838 4Fe-4S dicluster domain RY45_15815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_15815 PF00384 Molybdopterin oxidoreductase RY45_15815 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RY45_15815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_15815 PF01568 Molydopterin dinucleotide binding domain RY45_15815 PF01568 Molydopterin dinucleotide binding domain RY45_15815 PF00384 Molybdopterin oxidoreductase RY45_15815 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RY45_15815 PF12838 4Fe-4S dicluster domain RY45_15845 PF02634 FdhD/NarQ family RY45_15850 PF12728 Helix-turn-helix domain RY45_15850 PF12727 PBP superfamily domain RY45_15855 PF00989 PAS fold RY45_15855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_15855 PF00512 His Kinase A (phospho-acceptor) domain RY45_15860 PF00158 Sigma-54 interaction domain RY45_15860 PF00072 Response regulator receiver domain RY45_15860 PF02954 Bacterial regulatory protein, Fis family RY45_15865 PF12849 PBP superfamily domain RY45_15870 PF00528 Binding-protein-dependent transport system inner membrane component RY45_15875 PF00005 ABC transporter RY45_15880 PF12804 MobA-like NTP transferase domain RY45_15885 PF03454 MoeA C-terminal region (domain IV) RY45_15885 PF03453 MoeA N-terminal region (domain I and II) RY45_15885 PF00994 Probable molybdopterin binding domain RY45_15890 PF04632 Fusaric acid resistance protein family RY45_15905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_15905 PF08447 PAS fold RY45_15905 PF13426 PAS domain RY45_15925 PF05114 Protein of unknown function (DUF692) RY45_15935 PF10725 Protein of unknown function (DUF2517) RY45_15955 PF00512 His Kinase A (phospho-acceptor) domain RY45_15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_15955 PF00072 Response regulator receiver domain RY45_15955 PF09308 LuxQ, periplasmic RY45_15960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_15965 PF00528 Binding-protein-dependent transport system inner membrane component RY45_15970 PF00528 Binding-protein-dependent transport system inner membrane component RY45_15970 PF12911 N-terminal TM domain of oligopeptide transport permease C RY45_15975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_15975 PF00005 ABC transporter RY45_15980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_15980 PF00005 ABC transporter RY45_15990 PF01869 BadF/BadG/BcrA/BcrD ATPase family RY45_15995 PF00728 Glycosyl hydrolase family 20, catalytic domain RY45_15995 PF02838 Glycosyl hydrolase family 20, domain 2 RY45_16000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_16000 PF08447 PAS fold RY45_16010 PF08272 Topoisomerase I zinc-ribbon-like RY45_16010 PF01751 Toprim domain RY45_16010 PF01131 DNA topoisomerase RY45_16010 PF01396 Topoisomerase DNA binding C4 zinc finger RY45_16015 PF04996 Succinylarginine dihydrolase RY45_16020 PF08496 Peptidase family S49 N-terminal RY45_16020 PF01343 Peptidase family S49 RY45_16025 PF00106 short chain dehydrogenase RY45_16030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_16030 PF03466 LysR substrate binding domain RY45_16035 PF07690 Major Facilitator Superfamily RY45_16040 PF00155 Aminotransferase class I and II RY45_16050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_16050 PF03466 LysR substrate binding domain RY45_16060 PF01161 Phosphatidylethanolamine-binding protein RY45_16070 PF01204 Trehalase RY45_16075 PF00579 tRNA synthetases class I (W and Y) RY45_16080 PF01551 Peptidase family M23 RY45_16080 PF08525 Opacity-associated protein A N-terminal motif RY45_16080 PF01476 LysM domain RY45_16085 PF03702 Anhydro-N-acetylmuramic acid kinase RY45_16090 PF01965 DJ-1/PfpI family RY45_16095 PF01042 Endoribonuclease L-PSP RY45_16105 PF02779 Transketolase, pyrimidine binding domain RY45_16105 PF02780 Transketolase, C-terminal domain RY45_16105 PF00456 Transketolase, thiamine diphosphate binding domain RY45_16110 PF00438 S-adenosylmethionine synthetase, N-terminal domain RY45_16110 PF02773 S-adenosylmethionine synthetase, C-terminal domain RY45_16110 PF02772 S-adenosylmethionine synthetase, central domain RY45_16115 PF17283 SprT-like zinc ribbon domain RY45_16115 PF10263 SprT-like family RY45_16120 PF04231 Endonuclease I RY45_16125 PF04452 RNA methyltransferase RY45_16130 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RY45_16130 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RY45_16135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_16135 PF00672 HAMP domain RY45_16135 PF12729 Four helix bundle sensory module for signal transduction RY45_16140 PF02622 Uncharacterized ACR, COG1678 RY45_16145 PF03652 Holliday junction resolvase RY45_16150 PF00854 POT family RY45_16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_16155 PF03466 LysR substrate binding domain RY45_16170 PF00144 Beta-lactamase RY45_16175 PF17863 AAA lid domain RY45_16175 PF07726 ATPase family associated with various cellular activities (AAA) RY45_16185 PF01841 Transglutaminase-like superfamily RY45_16185 PF13559 Domain of unknown function (DUF4129) RY45_16185 PF11992 Domain of unknown function (DUF3488) RY45_16190 PF01235 Sodium:alanine symporter family RY45_16195 PF00923 Transaldolase/Fructose-6-phosphate aldolase RY45_16210 PF03167 Uracil DNA glycosylase superfamily RY45_16215 PF01228 Glycine radical RY45_16220 PF00375 Sodium:dicarboxylate symporter family RY45_16225 PF00793 DAHP synthetase I family RY45_16230 PF13369 Transglutaminase-like superfamily RY45_16240 PF13847 Methyltransferase domain RY45_16240 PF17827 PrmC N-terminal domain RY45_16245 PF03462 PCRF domain RY45_16245 PF00472 RF-1 domain RY45_16250 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RY45_16250 PF01488 Shikimate / quinate 5-dehydrogenase RY45_16250 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RY45_16255 PF03550 Outer membrane lipoprotein LolB RY45_16270 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RY45_16270 PF14572 Phosphoribosyl synthetase-associated domain RY45_16275 PF02872 5'-nucleotidase, C-terminal domain RY45_16275 PF00149 Calcineurin-like phosphoesterase RY45_16280 PF01195 Peptidyl-tRNA hydrolase RY45_16285 PF06071 Protein of unknown function (DUF933) RY45_16285 PF01926 50S ribosome-binding GTPase RY45_16330 PF02080 TrkA-C domain RY45_16330 PF03600 Citrate transporter RY45_16335 PF04973 Nicotinamide mononucleotide transporter RY45_16340 PF01048 Phosphorylase superfamily RY45_16360 PF00128 Alpha amylase, catalytic domain RY45_16360 PF16657 Maltogenic Amylase, C-terminal domain RY45_16370 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RY45_16370 PF10371 Domain of unknown function RY45_16370 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RY45_16370 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RY45_16370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_16375 PF07690 Major Facilitator Superfamily RY45_16380 PF13419 Haloacid dehalogenase-like hydrolase RY45_16395 PF00171 Aldehyde dehydrogenase family RY45_16400 PF04958 Arginine N-succinyltransferase beta subunit RY45_16405 PF00202 Aminotransferase class-III RY45_16410 PF00117 Glutamine amidotransferase class-I RY45_16420 PF00579 tRNA synthetases class I (W and Y) RY45_16425 PF13419 Haloacid dehalogenase-like hydrolase RY45_16430 PF00834 Ribulose-phosphate 3 epimerase family RY45_16435 PF02086 D12 class N6 adenine-specific DNA methyltransferase RY45_16445 PF01761 3-dehydroquinate synthase RY45_16450 PF01202 Shikimate kinase RY45_16455 PF00263 Bacterial type II and III secretion system protein RY45_16455 PF11741 AMIN domain RY45_16455 PF07660 Secretin and TonB N terminus short domain RY45_16455 PF03958 Bacterial type II/III secretion system short domain RY45_16480 PF00912 Transglycosylase RY45_16480 PF17092 Penicillin-binding protein OB-like domain RY45_16480 PF00905 Penicillin binding protein transpeptidase domain RY45_16485 PF03466 LysR substrate binding domain RY45_16485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_16490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_16490 PF00672 HAMP domain RY45_16490 PF02743 Cache domain RY45_16505 PF03466 LysR substrate binding domain RY45_16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_16520 PF01476 LysM domain RY45_16520 PF08525 Opacity-associated protein A N-terminal motif RY45_16520 PF01551 Peptidase family M23 RY45_16530 PF12794 Mechanosensitive ion channel inner membrane domain 1 RY45_16530 PF12795 Mechanosensitive ion channel porin domain RY45_16530 PF00924 Mechanosensitive ion channel RY45_16535 PF03009 Glycerophosphoryl diester phosphodiesterase family RY45_16540 PF02743 Cache domain RY45_16540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_16540 PF00672 HAMP domain RY45_16545 PF00890 FAD binding domain RY45_16545 PF02910 Fumarate reductase flavoprotein C-term RY45_16550 PF13085 2Fe-2S iron-sulfur cluster binding domain RY45_16550 PF13183 4Fe-4S dicluster domain RY45_16555 PF02300 Fumarate reductase subunit C RY45_16560 PF02313 Fumarate reductase subunit D RY45_16580 PF06224 Winged helix DNA-binding domain RY45_16595 PF00501 AMP-binding enzyme RY45_16615 PF00486 Transcriptional regulatory protein, C terminal RY45_16615 PF00072 Response regulator receiver domain RY45_16620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_16620 PF00512 His Kinase A (phospho-acceptor) domain RY45_16620 PF08521 Two-component sensor kinase N-terminal RY45_16630 PF00478 IMP dehydrogenase / GMP reductase domain RY45_16640 PF01132 Elongation factor P (EF-P) OB domain RY45_16640 PF09285 Elongation factor P, C-terminal RY45_16640 PF08207 Elongation factor P (EF-P) KOW-like domain RY45_16645 PF09997 Predicted membrane protein (DUF2238) RY45_16655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_16655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_16665 PF08448 PAS fold RY45_16665 PF00990 Diguanylate cyclase, GGDEF domain RY45_16675 PF13419 Haloacid dehalogenase-like hydrolase RY45_16690 PF05230 MASE2 domain RY45_16690 PF00990 Diguanylate cyclase, GGDEF domain RY45_16695 PF00313 'Cold-shock' DNA-binding domain RY45_16700 PF00857 Isochorismatase family RY45_16705 PF01494 FAD binding domain RY45_16710 PF04055 Radical SAM superfamily RY45_16710 PF00919 Uncharacterized protein family UPF0004 RY45_16710 PF01938 TRAM domain RY45_16715 PF02562 PhoH-like protein RY45_16720 PF02130 Uncharacterized protein family UPF0054 RY45_16725 PF03471 Transporter associated domain RY45_16725 PF00571 CBS domain RY45_16730 PF00795 Carbon-nitrogen hydrolase RY45_16735 PF07295 Zinc-ribbon containing domain RY45_16740 PF00133 tRNA synthetases class I (I, L, M and V) RY45_16740 PF13603 Leucyl-tRNA synthetase, Domain 2 RY45_16740 PF08264 Anticodon-binding domain of tRNA RY45_16760 PF01467 Cytidylyltransferase-like RY45_16770 PF02590 Predicted SPOUT methyltransferase RY45_16775 PF03717 Penicillin-binding Protein dimerisation domain RY45_16775 PF00905 Penicillin binding protein transpeptidase domain RY45_16780 PF01098 Cell cycle protein RY45_16785 PF13406 Transglycosylase SLT domain RY45_16790 PF05036 Sporulation related domain RY45_16790 PF03330 Lytic transglycolase RY45_16795 PF00768 D-alanyl-D-alanine carboxypeptidase RY45_16795 PF07943 Penicillin-binding protein 5, C-terminal domain RY45_16800 PF04359 Protein of unknown function (DUF493) RY45_16805 PF03099 Biotin/lipoate A/B protein ligase family RY45_16810 PF04055 Radical SAM superfamily RY45_16810 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RY45_16835 PF00665 Integrase core domain RY45_16850 PF06821 Serine hydrolase RY45_16855 PF02508 Rnf-Nqr subunit, membrane protein RY45_16865 PF00583 Acetyltransferase (GNAT) family RY45_16870 PF13411 MerR HTH family regulatory protein RY45_16875 PF01368 DHH family RY45_16875 PF02272 DHHA1 domain RY45_16875 PF17768 RecJ OB domain RY45_16880 PF13098 Thioredoxin-like domain RY45_16880 PF10411 Disulfide bond isomerase protein N-terminus RY45_16885 PF01741 Large-conductance mechanosensitive channel, MscL RY45_16890 PF02899 Phage integrase, N-terminal SAM-like domain RY45_16890 PF00589 Phage integrase family RY45_16895 PF00258 Flavodoxin RY45_16900 PF01523 Putative modulator of DNA gyrase RY45_16905 PF01523 Putative modulator of DNA gyrase RY45_16915 PF17969 L,D-transpeptidase C-terminal domain RY45_16915 PF03734 L,D-transpeptidase catalytic domain RY45_16925 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RY45_16945 PF01568 Molydopterin dinucleotide binding domain RY45_16945 PF00384 Molybdopterin oxidoreductase RY45_16945 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_16950 PF03916 Polysulphide reductase, NrfD RY45_16955 PF13247 4Fe-4S dicluster domain RY45_16960 PF00512 His Kinase A (phospho-acceptor) domain RY45_16960 PF00989 PAS fold RY45_16960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_16965 PF00196 Bacterial regulatory proteins, luxR family RY45_16965 PF00072 Response regulator receiver domain RY45_16970 PF07694 5TMR of 5TMR-LYT RY45_16970 PF06580 Histidine kinase RY45_16975 PF00072 Response regulator receiver domain RY45_16975 PF04397 LytTr DNA-binding domain RY45_16980 PF02554 Carbon starvation protein CstA RY45_16980 PF13722 5TM C-terminal transporter carbon starvation CstA RY45_16985 PF03575 Peptidase family S51 RY45_16990 PF00206 Lyase RY45_16990 PF10415 Fumarase C C-terminus RY45_17000 PF02635 DsrE/DsrF-like family RY45_17005 PF03707 Bacterial signalling protein N terminal repeat RY45_17005 PF00990 Diguanylate cyclase, GGDEF domain RY45_17005 PF00563 EAL domain RY45_17010 PF07690 Major Facilitator Superfamily RY45_17015 PF00013 KH domain RY45_17015 PF00575 S1 RNA binding domain RY45_17015 PF03725 3' exoribonuclease family, domain 2 RY45_17015 PF01138 3' exoribonuclease family, domain 1 RY45_17015 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RY45_17020 PF00312 Ribosomal protein S15 RY45_17025 PF16198 tRNA pseudouridylate synthase B C-terminal domain RY45_17025 PF09157 Pseudouridine synthase II TruB, C-terminal RY45_17025 PF01509 TruB family pseudouridylate synthase (N terminal domain) RY45_17030 PF02033 Ribosome-binding factor A RY45_17035 PF00009 Elongation factor Tu GTP binding domain RY45_17035 PF08364 Bacterial translation initiation factor IF-2 associated region RY45_17035 PF04760 Translation initiation factor IF-2, N-terminal region RY45_17035 PF11987 Translation-initiation factor 2 RY45_17040 PF08529 NusA N-terminal domain RY45_17040 PF13184 NusA-like KH domain RY45_17040 PF00575 S1 RNA binding domain RY45_17045 PF02576 RimP N-terminal domain RY45_17045 PF17384 RimP C-terminal SH3 domain RY45_17060 PF03840 Preprotein translocase SecG subunit RY45_17065 PF00121 Triosephosphate isomerase RY45_17070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RY45_17070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RY45_17070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RY45_17070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RY45_17075 PF00809 Pterin binding enzyme RY45_17080 PF06480 FtsH Extracellular RY45_17080 PF17862 AAA+ lid domain RY45_17080 PF01434 Peptidase family M41 RY45_17080 PF00004 ATPase family associated with various cellular activities (AAA) RY45_17085 PF01728 FtsJ-like methyltransferase RY45_17090 PF01985 CRS1 / YhbY (CRM) domain RY45_17100 PF03449 Transcription elongation factor, N-terminal RY45_17100 PF01272 Transcription elongation factor, GreA/GreB, C-term RY45_17105 PF00691 OmpA family RY45_17105 PF13677 Membrane MotB of proton-channel complex MotA/MotB RY45_17110 PF01618 MotA/TolQ/ExbB proton channel family RY45_17115 PF02609 Exonuclease VII small subunit RY45_17120 PF00348 Polyprenyl synthetase RY45_17125 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RY45_17125 PF02779 Transketolase, pyrimidine binding domain RY45_17125 PF02780 Transketolase, C-terminal domain RY45_17130 PF12911 N-terminal TM domain of oligopeptide transport permease C RY45_17130 PF00528 Binding-protein-dependent transport system inner membrane component RY45_17140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_17145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_17145 PF00005 ABC transporter RY45_17150 PF04608 Phosphatidylglycerophosphatase A RY45_17155 PF00586 AIR synthase related protein, N-terminal domain RY45_17155 PF02769 AIR synthase related protein, C-terminal domain RY45_17160 PF01029 NusB family RY45_17165 PF00885 6,7-dimethyl-8-ribityllumazine synthase RY45_17175 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RY45_17175 PF00925 GTP cyclohydrolase II RY45_17180 PF00677 Lumazine binding domain RY45_17185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RY45_17185 PF01872 RibD C-terminal domain RY45_17190 PF03477 ATP cone domain RY45_17200 PF00464 Serine hydroxymethyltransferase RY45_17215 PF02613 Nitrate reductase delta subunit RY45_17235 PF00563 EAL domain RY45_17235 PF03707 Bacterial signalling protein N terminal repeat RY45_17235 PF13188 PAS domain RY45_17235 PF00990 Diguanylate cyclase, GGDEF domain RY45_17245 PF16177 Acetyl-coenzyme A synthetase N-terminus RY45_17245 PF13193 AMP-binding enzyme C-terminal domain RY45_17245 PF00501 AMP-binding enzyme RY45_17250 PF01220 Dehydroquinase class II RY45_17255 PF00364 Biotin-requiring enzyme RY45_17260 PF00289 Biotin carboxylase, N-terminal domain RY45_17260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RY45_17260 PF02785 Biotin carboxylase C-terminal domain RY45_17270 PF00474 Sodium:solute symporter family RY45_17275 PF02378 Phosphotransferase system, EIIC RY45_17275 PF00367 phosphotransferase system, EIIB RY45_17275 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RY45_17280 PF03466 LysR substrate binding domain RY45_17280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_17285 PF00107 Zinc-binding dehydrogenase RY45_17285 PF08240 Alcohol dehydrogenase GroES-like domain RY45_17295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_17295 PF01842 ACT domain RY45_17295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_17300 PF14602 Hexapeptide repeat of succinyl-transferase RY45_17300 PF12464 Maltose acetyltransferase RY45_17305 PF00881 Nitroreductase family RY45_17310 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_17310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RY45_17315 PF01343 Peptidase family S49 RY45_17330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_17330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RY45_17335 PF07023 Protein of unknown function (DUF1315) RY45_17340 PF17763 Glutaminase/Asparaginase C-terminal domain RY45_17340 PF00710 Asparaginase, N-terminal RY45_17345 PF03616 Sodium/glutamate symporter RY45_17350 PF02743 Cache domain RY45_17350 PF00672 HAMP domain RY45_17350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_17355 PF00472 RF-1 domain RY45_17355 PF03462 PCRF domain RY45_17360 PF00152 tRNA synthetases class II (D, K and N) RY45_17360 PF01336 OB-fold nucleic acid binding domain RY45_17365 PF02567 Phenazine biosynthesis-like protein RY45_17370 PF00667 FAD binding domain RY45_17370 PF00258 Flavodoxin RY45_17370 PF00175 Oxidoreductase NAD-binding domain RY45_17375 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_17375 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_17380 PF01507 Phosphoadenosine phosphosulfate reductase family RY45_17385 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RY45_17390 PF00528 Binding-protein-dependent transport system inner membrane component RY45_17395 PF00571 CBS domain RY45_17395 PF00005 ABC transporter RY45_17400 PF00186 Dihydrofolate reductase RY45_17405 PF12821 Threonine/Serine exporter, ThrE RY45_17410 PF06738 Putative threonine/serine exporter RY45_17420 PF00994 Probable molybdopterin binding domain RY45_17430 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_17430 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_17445 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_17445 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_17470 PF00221 Aromatic amino acid lyase RY45_17480 PF07977 FabA-like domain RY45_17485 PF13193 AMP-binding enzyme C-terminal domain RY45_17485 PF00501 AMP-binding enzyme RY45_17495 PF00550 Phosphopantetheine attachment site RY45_17500 PF00550 Phosphopantetheine attachment site RY45_17535 PF00034 Cytochrome c RY45_17535 PF03150 Di-haem cytochrome c peroxidase RY45_17540 PF00194 Eukaryotic-type carbonic anhydrase RY45_17545 PF04227 Indigoidine synthase A like protein RY45_17550 PF00294 pfkB family carbohydrate kinase RY45_17555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_17555 PF04324 BFD-like [2Fe-2S] binding domain RY45_17555 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_17555 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_17555 PF13806 Rieske-like [2Fe-2S] domain RY45_17555 PF18267 Rubredoxin NAD+ reductase C-terminal domain RY45_17560 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_17560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_17560 PF04324 BFD-like [2Fe-2S] binding domain RY45_17560 PF13806 Rieske-like [2Fe-2S] domain RY45_17560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_17560 PF18267 Rubredoxin NAD+ reductase C-terminal domain RY45_17565 PF00005 ABC transporter RY45_17570 PF00528 Binding-protein-dependent transport system inner membrane component RY45_17575 PF00005 ABC transporter RY45_17585 PF14824 Sirohaem biosynthesis protein central RY45_17585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_17585 PF10414 Sirohaem synthase dimerisation region RY45_17590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_17590 PF01568 Molydopterin dinucleotide binding domain RY45_17590 PF00384 Molybdopterin oxidoreductase RY45_17590 PF04324 BFD-like [2Fe-2S] binding domain RY45_17605 PF00582 Universal stress protein family RY45_17615 PF00171 Aldehyde dehydrogenase family RY45_17620 PF00696 Amino acid kinase family RY45_17620 PF01472 PUA domain RY45_17625 PF07417 Sigma factor-binding transcriptional regulator Crl RY45_17635 PF00156 Phosphoribosyl transferase domain RY45_17640 PF01546 Peptidase family M20/M25/M40 RY45_17640 PF07687 Peptidase dimerisation domain RY45_17645 PF00005 ABC transporter RY45_17645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_17650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_17650 PF00005 ABC transporter RY45_17660 PF00528 Binding-protein-dependent transport system inner membrane component RY45_17660 PF12911 N-terminal TM domain of oligopeptide transport permease C RY45_17665 PF00528 Binding-protein-dependent transport system inner membrane component RY45_17670 PF00593 TonB dependent receptor RY45_17670 PF07715 TonB-dependent Receptor Plug Domain RY45_17680 PF01618 MotA/TolQ/ExbB proton channel family RY45_17685 PF01618 MotA/TolQ/ExbB proton channel family RY45_17690 PF02472 Biopolymer transport protein ExbD/TolR RY45_17745 PF00749 tRNA synthetases class I (E and Q), catalytic domain RY45_17750 PF00749 tRNA synthetases class I (E and Q), catalytic domain RY45_17755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_17755 PF00672 HAMP domain RY45_17765 PF00313 'Cold-shock' DNA-binding domain RY45_17795 PF00929 Exonuclease RY45_17800 PF03193 RsgA GTPase RY45_17805 PF02666 Phosphatidylserine decarboxylase RY45_17810 PF09905 DNA-binding protein VF530 RY45_17825 PF04224 Protein of unknown function, DUF417 RY45_17830 PF02627 Carboxymuconolactone decarboxylase family RY45_17835 PF12833 Helix-turn-helix domain RY45_17835 PF12852 Cupin RY45_17845 PF03707 Bacterial signalling protein N terminal repeat RY45_17845 PF00563 EAL domain RY45_17845 PF00990 Diguanylate cyclase, GGDEF domain RY45_17850 PF06877 Regulator of ribonuclease activity B RY45_17855 PF00801 PKD domain RY45_17855 PF05547 Immune inhibitor A peptidase M6 RY45_17870 PF00561 alpha/beta hydrolase fold RY45_17875 PF00005 ABC transporter RY45_17875 PF00664 ABC transporter transmembrane region RY45_17880 PF06004 Bacterial protein of unknown function (DUF903) RY45_17885 PF05922 Peptidase inhibitor I9 RY45_17885 PF00082 Subtilase family RY45_17890 PF00581 Rhodanese-like domain RY45_17895 PF04960 Glutaminase RY45_17900 PF04320 Protein with unknown function (DUF469) RY45_17905 PF02390 Putative methyltransferase RY45_17910 PF04389 Peptidase family M28 RY45_17910 PF01483 Proprotein convertase P-domain RY45_17915 PF00155 Aminotransferase class I and II RY45_17920 PF12792 CSS motif domain associated with EAL RY45_17920 PF00563 EAL domain RY45_17925 PF08338 Domain of unknown function (DUF1731) RY45_17925 PF01370 NAD dependent epimerase/dehydratase family RY45_17935 PF00005 ABC transporter RY45_17940 PF13472 GDSL-like Lipase/Acylhydrolase family RY45_17945 PF00072 Response regulator receiver domain RY45_17945 PF01584 CheW-like domain RY45_17955 PF06826 Predicted Permease Membrane Region RY45_17955 PF02080 TrkA-C domain RY45_17960 PF03006 Haemolysin-III related RY45_17965 PF00282 Pyridoxal-dependent decarboxylase conserved domain RY45_17970 PF04279 Intracellular septation protein A RY45_17975 PF03795 YCII-related domain RY45_17980 PF00459 Inositol monophosphatase family RY45_17990 PF00483 Nucleotidyl transferase RY45_17995 PF00854 POT family RY45_18000 PF00072 Response regulator receiver domain RY45_18030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_18035 PF02321 Outer membrane efflux protein RY45_18040 PF01207 Dihydrouridine synthase (Dus) RY45_18045 PF02954 Bacterial regulatory protein, Fis family RY45_18050 PF01810 LysE type translocator RY45_18075 PF01521 Iron-sulphur cluster biosynthesis RY45_18085 PF00654 Voltage gated chloride channel RY45_18090 PF00202 Aminotransferase class-III RY45_18105 PF01569 PAP2 superfamily RY45_18115 PF11849 Domain of unknown function (DUF3369) RY45_18125 PF00893 Small Multidrug Resistance protein RY45_18130 PF00893 Small Multidrug Resistance protein RY45_18135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_18140 PF00912 Transglycosylase RY45_18140 PF00905 Penicillin binding protein transpeptidase domain RY45_18140 PF14814 Bifunctional transglycosylase second domain RY45_18145 PF04408 Helicase associated domain (HA2) RY45_18145 PF00271 Helicase conserved C-terminal domain RY45_18145 PF00270 DEAD/DEAH box helicase RY45_18145 PF08482 ATP-dependent helicase C-terminal RY45_18155 PF03749 Sugar fermentation stimulation protein RE domain RY45_18155 PF17746 SfsA N-terminal OB domain RY45_18160 PF01258 Prokaryotic dksA/traR C4-type zinc finger RY45_18165 PF00749 tRNA synthetases class I (E and Q), catalytic domain RY45_18170 PF12627 Probable RNA and SrmB- binding site of polymerase A RY45_18170 PF12626 Polymerase A arginine-rich C-terminus RY45_18170 PF01743 Poly A polymerase head domain RY45_18175 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RY45_18180 PF02548 Ketopantoate hydroxymethyltransferase RY45_18185 PF02569 Pantoate-beta-alanine ligase RY45_18215 PF01869 BadF/BadG/BcrA/BcrD ATPase family RY45_18220 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RY45_18225 PF01061 ABC-2 type transporter RY45_18230 PF00005 ABC transporter RY45_18235 PF00156 Phosphoribosyl transferase domain RY45_18240 PF00440 Bacterial regulatory proteins, tetR family RY45_18245 PF02441 Flavoprotein RY45_18250 PF02875 Mur ligase family, glutamate ligase domain RY45_18250 PF01225 Mur ligase family, catalytic domain RY45_18250 PF08245 Mur ligase middle domain RY45_18255 PF00719 Inorganic pyrophosphatase RY45_18270 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) RY45_18285 PF00005 ABC transporter RY45_18305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_18305 PF08447 PAS fold RY45_18320 PF02080 TrkA-C domain RY45_18320 PF03600 Citrate transporter RY45_18325 PF00009 Elongation factor Tu GTP binding domain RY45_18330 PF01507 Phosphoadenosine phosphosulfate reductase family RY45_18335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_18335 PF10414 Sirohaem synthase dimerisation region RY45_18335 PF14824 Sirohaem biosynthesis protein central RY45_18340 PF01145 SPFH domain / Band 7 family RY45_18340 PF16200 C-terminal region of band_7 RY45_18345 PF01957 NfeD-like C-terminal, partner-binding RY45_18350 PF00571 CBS domain RY45_18350 PF01380 SIS domain RY45_18355 PF12848 ABC transporter RY45_18355 PF00005 ABC transporter RY45_18365 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RY45_18390 PF13411 MerR HTH family regulatory protein RY45_18400 PF00474 Sodium:solute symporter family RY45_18405 PF03734 L,D-transpeptidase catalytic domain RY45_18405 PF17969 L,D-transpeptidase C-terminal domain RY45_18410 PF00924 Mechanosensitive ion channel RY45_18415 PF00871 Acetokinase family RY45_18420 PF04074 YhcH/YjgK/YiaL RY45_18430 PF07732 Multicopper oxidase RY45_18430 PF07731 Multicopper oxidase RY45_18430 PF00394 Multicopper oxidase RY45_18435 PF01177 Asp/Glu/Hydantoin racemase RY45_18440 PF01810 LysE type translocator RY45_18450 PF00155 Aminotransferase class I and II RY45_18450 PF00392 Bacterial regulatory proteins, gntR family RY45_18475 PF00209 Sodium:neurotransmitter symporter family RY45_18485 PF00209 Sodium:neurotransmitter symporter family RY45_18505 PF07690 Major Facilitator Superfamily RY45_18515 PF01037 Lrp/AsnC ligand binding domain RY45_18530 PF01047 MarR family RY45_18535 PF02566 OsmC-like protein RY45_18540 PF16884 N-terminal domain of oxidoreductase RY45_18540 PF00107 Zinc-binding dehydrogenase RY45_18545 PF00293 NUDIX domain RY45_18555 PF01641 SelR domain RY45_18560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RY45_18560 PF00128 Alpha amylase, catalytic domain RY45_18565 PF02806 Alpha amylase, C-terminal all-beta domain RY45_18565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RY45_18565 PF00128 Alpha amylase, catalytic domain RY45_18570 PF02446 4-alpha-glucanotransferase RY45_18575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RY45_18575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_18580 PF01263 Aldose 1-epimerase RY45_18585 PF02445 Quinolinate synthetase A protein RY45_18590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_18590 PF00672 HAMP domain RY45_18625 PF13174 Tetratricopeptide repeat RY45_18625 PF16331 TolA binding protein trimerisation RY45_18630 PF00691 OmpA family RY45_18635 PF04052 TolB amino-terminal domain RY45_18635 PF07676 WD40-like Beta Propeller Repeat RY45_18645 PF02472 Biopolymer transport protein ExbD/TolR RY45_18650 PF01618 MotA/TolQ/ExbB proton channel family RY45_18655 PF03061 Thioesterase superfamily RY45_18660 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) RY45_18665 PF08173 Membrane bound YbgT-like protein RY45_18670 PF02322 Cytochrome bd terminal oxidase subunit II RY45_18675 PF01654 Cytochrome bd terminal oxidase subunit I RY45_18680 PF05491 RuvB C-terminal winged helix domain RY45_18680 PF05496 Holliday junction DNA helicase RuvB P-loop domain RY45_18680 PF17864 RuvB AAA lid domain RY45_18685 PF01330 RuvA N terminal domain RY45_18685 PF07499 RuvA, C-terminal domain RY45_18690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_18690 PF00672 HAMP domain RY45_18695 PF04073 Aminoacyl-tRNA editing domain RY45_18695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RY45_18695 PF03129 Anticodon binding domain RY45_18700 PF00106 short chain dehydrogenase RY45_18715 PF00378 Enoyl-CoA hydratase/isomerase RY45_18720 PF10952 Protein of unknown function (DUF2753) RY45_18725 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_18735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_18750 PF02594 Uncharacterised ACR, YggU family COG1872 RY45_18755 PF02325 YGGT family RY45_18760 PF14748 Pyrroline-5-carboxylate reductase dimerisation RY45_18760 PF03807 NADP oxidoreductase coenzyme F420-dependent RY45_18765 PF01168 Alanine racemase, N-terminal domain RY45_18770 PF00437 Type II/IV secretion system protein RY45_18775 PF00437 Type II/IV secretion system protein RY45_18780 PF03883 Peroxide stress protein YaaA RY45_18785 PF00270 DEAD/DEAH box helicase RY45_18785 PF00271 Helicase conserved C-terminal domain RY45_18790 PF05175 Methyltransferase small domain RY45_18795 PF05525 Branched-chain amino acid transport protein RY45_18800 PF05525 Branched-chain amino acid transport protein RY45_18820 PF01207 Dihydrouridine synthase (Dus) RY45_18830 PF00216 Bacterial DNA-binding protein RY45_18835 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ RY45_18840 PF07238 PilZ domain RY45_18845 PF18073 Rubredoxin metal binding domain RY45_18860 PF18429 Domain of unknown function (DUF5609) RY45_18870 PF13426 PAS domain RY45_18870 PF08447 PAS fold RY45_18870 PF08448 PAS fold RY45_18870 PF05231 MASE1 RY45_18870 PF00990 Diguanylate cyclase, GGDEF domain RY45_18870 PF00563 EAL domain RY45_18875 PF01048 Phosphorylase superfamily RY45_18880 PF01676 Metalloenzyme superfamily RY45_18885 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RY45_18885 PF00591 Glycosyl transferase family, a/b domain RY45_18885 PF02885 Glycosyl transferase family, helical bundle domain RY45_18890 PF01791 DeoC/LacD family aldolase RY45_18900 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_18900 PF07670 Nucleoside recognition RY45_18900 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_18905 PF01026 TatD related DNase RY45_18910 PF00114 Pilin (bacterial filament) RY45_18910 PF07963 Prokaryotic N-terminal methylation motif RY45_18915 PF05958 tRNA (Uracil-5-)-methyltransferase RY45_18915 PF01938 TRAM domain RY45_18920 PF00909 Ammonium Transporter Family RY45_18925 PF02899 Phage integrase, N-terminal SAM-like domain RY45_18925 PF00589 Phage integrase family RY45_18940 PF01381 Helix-turn-helix RY45_19145 PF03739 Lipopolysaccharide export system permease LptF/LptG RY45_19150 PF03739 Lipopolysaccharide export system permease LptF/LptG RY45_19155 PF02789 Cytosol aminopeptidase family, N-terminal domain RY45_19155 PF00883 Cytosol aminopeptidase family, catalytic domain RY45_19165 PF10458 Valyl tRNA synthetase tRNA binding arm RY45_19165 PF00133 tRNA synthetases class I (I, L, M and V) RY45_19165 PF08264 Anticodon-binding domain of tRNA RY45_19170 PF03471 Transporter associated domain RY45_19170 PF01595 Cyclin M transmembrane N-terminal domain RY45_19170 PF00571 CBS domain RY45_19175 PF09335 SNARE associated Golgi protein RY45_19180 PF00768 D-alanyl-D-alanine carboxypeptidase RY45_19215 PF02599 Global regulator protein family RY45_19220 PF01842 ACT domain RY45_19220 PF13840 ACT domain RY45_19220 PF00696 Amino acid kinase family RY45_19225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RY45_19225 PF01411 tRNA synthetases class II (A) RY45_19225 PF02272 DHHA1 domain RY45_19230 PF02631 RecX family RY45_19235 PF00154 recA bacterial DNA recombination protein RY45_19240 PF02464 Competence-damaged protein RY45_19245 PF00488 MutS domain V RY45_19245 PF05192 MutS domain III RY45_19245 PF01624 MutS domain I RY45_19245 PF05190 MutS family domain IV RY45_19245 PF05188 MutS domain II RY45_19250 PF02028 BCCT, betaine/carnitine/choline family transporter RY45_19270 PF04222 Protein of unknown function (DUF416) RY45_19275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_19280 PF08525 Opacity-associated protein A N-terminal motif RY45_19280 PF01551 Peptidase family M23 RY45_19280 PF01476 LysM domain RY45_19300 PF01297 Zinc-uptake complex component A periplasmic RY45_19305 PF00005 ABC transporter RY45_19310 PF00950 ABC 3 transport family RY45_19315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_19315 PF03466 LysR substrate binding domain RY45_19320 PF00892 EamA-like transporter family RY45_19325 PF03167 Uracil DNA glycosylase superfamily RY45_19330 PF00892 EamA-like transporter family RY45_19340 PF01541 GIY-YIG catalytic domain RY45_19355 PF04012 PspA/IM30 family RY45_19360 PF01553 Acyltransferase RY45_19380 PF00578 AhpC/TSA family RY45_19385 PF01556 DnaJ C terminal domain RY45_19385 PF00226 DnaJ domain RY45_19385 PF00684 DnaJ central domain RY45_19415 PF07690 Major Facilitator Superfamily RY45_19420 PF03466 LysR substrate binding domain RY45_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_19425 PF03989 DNA gyrase C-terminal domain, beta-propeller RY45_19425 PF00521 DNA gyrase/topoisomerase IV, subunit A RY45_19430 PF01751 Toprim domain RY45_19430 PF00204 DNA gyrase B RY45_19430 PF00986 DNA gyrase B subunit, carboxyl terminus RY45_19430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_19435 PF04632 Fusaric acid resistance protein family RY45_19440 PF00529 HlyD membrane-fusion protein of T1SS RY45_19440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RY45_19445 PF07869 Protein of unknown function (DUF1656) RY45_19455 PF00293 NUDIX domain RY45_19460 PF05728 Uncharacterised protein family (UPF0227) RY45_19465 PF00149 Calcineurin-like phosphoesterase RY45_19470 PF06853 Protein of unknown function (DUF1249) RY45_19475 PF00293 NUDIX domain RY45_19480 PF02321 Outer membrane efflux protein RY45_19485 PF00294 pfkB family carbohydrate kinase RY45_19485 PF01467 Cytidylyltransferase-like RY45_19490 PF03279 Bacterial lipid A biosynthesis acyltransferase RY45_19505 PF01865 Protein of unknown function DUF47 RY45_19510 PF01384 Phosphate transporter family RY45_19515 PF04073 Aminoacyl-tRNA editing domain RY45_19520 PF07350 Protein of unknown function (DUF1479) RY45_19540 PF00392 Bacterial regulatory proteins, gntR family RY45_19540 PF00155 Aminotransferase class I and II RY45_19545 PF03466 LysR substrate binding domain RY45_19545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_19550 PF03788 LrgA family RY45_19555 PF04172 LrgB-like family RY45_19570 PF01966 HD domain RY45_19570 PF01743 Poly A polymerase head domain RY45_19570 PF12627 Probable RNA and SrmB- binding site of polymerase A RY45_19575 PF13401 AAA domain RY45_19575 PF01471 Putative peptidoglycan binding domain RY45_19580 PF16537 Type II secretion system protein B RY45_19585 PF00730 HhH-GPD superfamily base excision DNA repair protein RY45_19585 PF00633 Helix-hairpin-helix motif RY45_19585 PF14815 NUDIX domain RY45_19585 PF10576 Iron-sulfur binding domain of endonuclease III RY45_19590 PF04362 Bacterial Fe(2+) trafficking RY45_19595 PF01464 Transglycosylase SLT domain RY45_19595 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RY45_19600 PF04076 Bacterial OB fold (BOF) protein RY45_19605 PF00657 GDSL-like Lipase/Acylhydrolase RY45_19615 PF00691 OmpA family RY45_19615 PF01389 OmpA-like transmembrane domain RY45_19620 PF03886 ABC-type transport auxiliary lipoprotein component RY45_19625 PF02470 MlaD protein RY45_19630 PF04403 Paraquat-inducible protein A RY45_19635 PF17209 Hfq protein RY45_19640 PF13419 Haloacid dehalogenase-like hydrolase RY45_19650 PF00990 Diguanylate cyclase, GGDEF domain RY45_19650 PF01590 GAF domain RY45_19650 PF00563 EAL domain RY45_19650 PF00360 Phytochrome region RY45_19655 PF00701 Dihydrodipicolinate synthetase family RY45_19660 PF08468 Methyltransferase small domain N-terminal RY45_19660 PF05175 Methyltransferase small domain RY45_19665 PF00483 Nucleotidyl transferase RY45_19670 PF00534 Glycosyl transferases group 1 RY45_19670 PF08323 Starch synthase catalytic domain RY45_19710 PF03553 Na+/H+ antiporter family RY45_19715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_19715 PF03466 LysR substrate binding domain RY45_19720 PF13416 Bacterial extracellular solute-binding protein RY45_19725 PF00005 ABC transporter RY45_19725 PF08402 TOBE domain RY45_19730 PF00528 Binding-protein-dependent transport system inner membrane component RY45_19735 PF00528 Binding-protein-dependent transport system inner membrane component RY45_19740 PF00171 Aldehyde dehydrogenase family RY45_19750 PF00892 EamA-like transporter family RY45_19755 PF01037 Lrp/AsnC ligand binding domain RY45_19760 PF12464 Maltose acetyltransferase RY45_19760 PF14602 Hexapeptide repeat of succinyl-transferase RY45_19765 PF00128 Alpha amylase, catalytic domain RY45_19765 PF11941 Domain of unknown function (DUF3459) RY45_19770 PF00367 phosphotransferase system, EIIB RY45_19770 PF02378 Phosphotransferase system, EIIC RY45_19775 PF00356 Bacterial regulatory proteins, lacI family RY45_19790 PF17763 Glutaminase/Asparaginase C-terminal domain RY45_19790 PF00710 Asparaginase, N-terminal RY45_19805 PF02142 MGS-like domain RY45_19815 PF00210 Ferritin-like domain RY45_19830 PF08351 Domain of unknown function (DUF1726) RY45_19830 PF13718 GNAT acetyltransferase 2 RY45_19830 PF05127 Helicase RY45_19830 PF17176 tRNA-binding domain RY45_19835 PF00106 short chain dehydrogenase RY45_19840 PF00072 Response regulator receiver domain RY45_19840 PF01584 CheW-like domain RY45_19890 PF04717 Type VI secretion system, phage-baseplate injector RY45_19895 PF05638 Type VI secretion system effector, Hcp RY45_19920 PF02660 Glycerol-3-phosphate acyltransferase RY45_19925 PF02152 Dihydroneopterin aldolase RY45_19930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RY45_19940 PF07690 Major Facilitator Superfamily RY45_19945 PF07683 Cobalamin synthesis protein cobW C-terminal domain RY45_19945 PF02492 CobW/HypB/UreG, nucleotide-binding domain RY45_19950 PF01565 FAD binding domain RY45_19955 PF01810 LysE type translocator RY45_19960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_19960 PF03466 LysR substrate binding domain RY45_19965 PF12792 CSS motif domain associated with EAL RY45_19965 PF00563 EAL domain RY45_19970 PF00330 Aconitase family (aconitate hydratase) RY45_19970 PF11791 Aconitate B N-terminal domain RY45_19970 PF06434 Aconitate hydratase 2 N-terminus RY45_19975 PF01734 Patatin-like phospholipase RY45_19995 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_19995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_20000 PF00364 Biotin-requiring enzyme RY45_20000 PF02817 e3 binding domain RY45_20000 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RY45_20005 PF17831 Pyruvate dehydrogenase E1 component middle domain RY45_20005 PF00456 Transketolase, thiamine diphosphate binding domain RY45_20010 PF00392 Bacterial regulatory proteins, gntR family RY45_20010 PF07729 FCD domain RY45_20025 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RY45_20025 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RY45_20030 PF07963 Prokaryotic N-terminal methylation motif RY45_20035 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RY45_20035 PF00437 Type II/IV secretion system protein RY45_20040 PF00482 Type II secretion system (T2SS), protein F RY45_20045 PF06750 Bacterial Peptidase A24 N-terminal domain RY45_20045 PF01478 Type IV leader peptidase family RY45_20050 PF01121 Dephospho-CoA kinase RY45_20055 PF07072 Cell division protein RY45_20060 PF03884 DNA gyrase inhibitor YacG RY45_20065 PF00293 NUDIX domain RY45_20075 PF07516 SecA Wing and Scaffold domain RY45_20075 PF01043 SecA preprotein cross-linking domain RY45_20075 PF07517 SecA DEAD-like domain RY45_20075 PF02810 SEC-C motif RY45_20085 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RY45_20090 PF12327 FtsZ family, C-terminal domain RY45_20090 PF00091 Tubulin/FtsZ family, GTPase domain RY45_20095 PF02491 SHS2 domain inserted in FTSA RY45_20100 PF03799 Cell division protein FtsQ RY45_20100 PF08478 POTRA domain, FtsQ-type RY45_20105 PF01225 Mur ligase family, catalytic domain RY45_20105 PF02875 Mur ligase family, glutamate ligase domain RY45_20105 PF08245 Mur ligase middle domain RY45_20110 PF03033 Glycosyltransferase family 28 N-terminal domain RY45_20110 PF04101 Glycosyltransferase family 28 C-terminal domain RY45_20115 PF01098 Cell cycle protein RY45_20120 PF08245 Mur ligase middle domain RY45_20120 PF02875 Mur ligase family, glutamate ligase domain RY45_20125 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RY45_20125 PF00953 Glycosyl transferase family 4 RY45_20130 PF01225 Mur ligase family, catalytic domain RY45_20130 PF02875 Mur ligase family, glutamate ligase domain RY45_20130 PF08245 Mur ligase middle domain RY45_20135 PF01225 Mur ligase family, catalytic domain RY45_20135 PF02875 Mur ligase family, glutamate ligase domain RY45_20135 PF08245 Mur ligase middle domain RY45_20140 PF03717 Penicillin-binding Protein dimerisation domain RY45_20140 PF00905 Penicillin binding protein transpeptidase domain RY45_20145 PF04999 Cell division protein FtsL RY45_20150 PF01795 MraW methylase family RY45_20155 PF02381 MraZ protein, putative antitoxin-like RY45_20165 PF01464 Transglycosylase SLT domain RY45_20165 PF01476 LysM domain RY45_20170 PF13677 Membrane MotB of proton-channel complex MotA/MotB RY45_20170 PF00691 OmpA family RY45_20175 PF01618 MotA/TolQ/ExbB proton channel family RY45_20180 PF04542 Sigma-70 region 2 RY45_20180 PF04545 Sigma-70, region 4 RY45_20200 PF02561 Flagellar protein FliS RY45_20205 PF07196 Flagellin hook IN motif RY45_20205 PF02465 Flagellar hook-associated protein 2 N-terminus RY45_20205 PF07195 Flagellar hook-associated protein 2 C-terminus RY45_20210 PF00700 Bacterial flagellin C-terminal helical region RY45_20210 PF00669 Bacterial flagellin N-terminal helical region RY45_20230 PF00669 Bacterial flagellin N-terminal helical region RY45_20235 PF00460 Flagella basal body rod protein RY45_20235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_20245 PF02119 Flagellar P-ring protein RY45_20250 PF02107 Flagellar L-ring protein RY45_20255 PF00460 Flagella basal body rod protein RY45_20255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_20260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_20260 PF00460 Flagella basal body rod protein RY45_20265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_20265 PF00460 Flagella basal body rod protein RY45_20265 PF07559 Flagellar basal body protein FlaE RY45_20270 PF03963 Flagellar hook capping protein - N-terminal region RY45_20270 PF13861 FlgD Tudor-like domain RY45_20270 PF13860 FlgD Ig-like domain RY45_20275 PF00460 Flagella basal body rod protein RY45_20275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_20280 PF00460 Flagella basal body rod protein RY45_20305 PF18269 T3SS EscN ATPase C-terminal domain RY45_20305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_20315 PF14841 FliG middle domain RY45_20315 PF01706 FliG C-terminal domain RY45_20315 PF14842 FliG N-terminal domain RY45_20320 PF01514 Secretory protein of YscJ/FliF family RY45_20320 PF08345 Flagellar M-ring protein C-terminal RY45_20325 PF02049 Flagellar hook-basal body complex protein FliE RY45_20330 PF00072 Response regulator receiver domain RY45_20330 PF00158 Sigma-54 interaction domain RY45_20330 PF02954 Bacterial regulatory protein, Fis family RY45_20335 PF00771 FHIPEP family RY45_20340 PF01312 FlhB HrpN YscU SpaS Family RY45_20345 PF01311 Bacterial export proteins, family 1 RY45_20350 PF01313 Bacterial export proteins, family 3 RY45_20355 PF00813 FliP family RY45_20360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RY45_20370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_20375 PF04348 LppC putative lipoprotein RY45_20380 PF02021 Uncharacterised protein family UPF0102 RY45_20385 PF13580 SIS domain RY45_20390 PF04972 BON domain RY45_20395 PF04386 Stringent starvation protein B RY45_20400 PF02798 Glutathione S-transferase, N-terminal domain RY45_20400 PF00043 Glutathione S-transferase, C-terminal domain RY45_20405 PF02167 Cytochrome C1 family RY45_20410 PF00033 Cytochrome b/b6/petB RY45_20410 PF00032 Cytochrome b(C-terminal)/b6/petD RY45_20415 PF00355 Rieske [2Fe-2S] domain RY45_20415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RY45_20420 PF00380 Ribosomal protein S9/S16 RY45_20425 PF00572 Ribosomal protein L13 RY45_20430 PF03969 AFG1-like ATPase RY45_20440 PF00595 PDZ domain RY45_20440 PF13180 PDZ domain RY45_20445 PF13180 PDZ domain RY45_20475 PF01979 Amidohydrolase family RY45_20480 PF03841 L-seryl-tRNA selenium transferase RY45_20485 PF07071 KDGP aldolase RY45_20490 PF02378 Phosphotransferase system, EIIC RY45_20490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_20490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_20495 PF00381 PTS HPr component phosphorylation site RY45_20500 PF03668 P-loop ATPase protein family RY45_20505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_20510 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RY45_20515 PF04552 Sigma-54, DNA binding domain RY45_20515 PF04963 Sigma-54 factor, core binding domain RY45_20515 PF00309 Sigma-54 factor, Activator interacting domain (AID) RY45_20520 PF00005 ABC transporter RY45_20520 PF12399 Branched-chain amino acid ATP-binding cassette transporter RY45_20525 PF03968 OstA-like protein RY45_20530 PF06835 Lipopolysaccharide-assembly, LptC-related RY45_20540 PF00571 CBS domain RY45_20540 PF01380 SIS domain RY45_20545 PF00005 ABC transporter RY45_20550 PF02405 Permease MlaE RY45_20555 PF02470 MlaD protein RY45_20560 PF05494 MlaC protein RY45_20570 PF01722 BolA-like protein RY45_20575 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RY45_20580 PF01523 Putative modulator of DNA gyrase RY45_20585 PF04751 Protein of unknown function (DUF615) RY45_20595 PF04363 Protein of unknown function (DUF496) RY45_20625 PF01381 Helix-turn-helix RY45_20625 PF07883 Cupin domain RY45_20630 PF03594 Benzoate membrane transport protein RY45_20640 PF02219 Methylenetetrahydrofolate reductase RY45_20655 PF00672 HAMP domain RY45_20655 PF12729 Four helix bundle sensory module for signal transduction RY45_20655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_20660 PF03922 OmpW family RY45_20665 PF00990 Diguanylate cyclase, GGDEF domain RY45_20665 PF17158 Membrane-associated sensor, integral membrane domain RY45_20670 PF17755 UvrA DNA-binding domain RY45_20670 PF17760 UvrA interaction domain RY45_20670 PF00005 ABC transporter RY45_20675 PF00196 Bacterial regulatory proteins, luxR family RY45_20680 PF00436 Single-strand binding protein family RY45_20690 PF01545 Cation efflux family RY45_20690 PF16916 Dimerisation domain of Zinc Transporter RY45_20695 PF11656 YjbD family (DUF3811) RY45_20700 PF00313 'Cold-shock' DNA-binding domain RY45_20710 PF07715 TonB-dependent Receptor Plug Domain RY45_20710 PF00593 TonB dependent receptor RY45_20715 PF08448 PAS fold RY45_20715 PF00990 Diguanylate cyclase, GGDEF domain RY45_20720 PF00512 His Kinase A (phospho-acceptor) domain RY45_20720 PF00672 HAMP domain RY45_20720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_20725 PF00072 Response regulator receiver domain RY45_20725 PF00486 Transcriptional regulatory protein, C terminal RY45_20750 PF17151 Periplasmic sensor domain RY45_20750 PF00990 Diguanylate cyclase, GGDEF domain RY45_20760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_20770 PF13538 UvrD-like helicase C-terminal domain RY45_20775 PF12705 PD-(D/E)XK nuclease superfamily RY45_20775 PF13361 UvrD-like helicase C-terminal domain RY45_20775 PF00580 UvrD/REP helicase N-terminal domain RY45_20780 PF17946 RecC C-terminal domain RY45_20785 PF07681 DoxX RY45_20790 PF17954 Quercetinase C-terminal cupin domain RY45_20790 PF02678 Pirin RY45_20800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_20800 PF03466 LysR substrate binding domain RY45_20810 PF07702 UTRA domain RY45_20810 PF00392 Bacterial regulatory proteins, gntR family RY45_20825 PF00528 Binding-protein-dependent transport system inner membrane component RY45_20835 PF00005 ABC transporter RY45_20835 PF12857 TOBE-like domain RY45_20845 PF17158 Membrane-associated sensor, integral membrane domain RY45_20845 PF00990 Diguanylate cyclase, GGDEF domain RY45_20865 PF00583 Acetyltransferase (GNAT) family RY45_20870 PF00199 Catalase RY45_20870 PF06628 Catalase-related immune-responsive RY45_20895 PF00293 NUDIX domain RY45_20900 PF01594 AI-2E family transporter RY45_20915 PF04371 Porphyromonas-type peptidyl-arginine deiminase RY45_20920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_20920 PF03466 LysR substrate binding domain RY45_20925 PF02954 Bacterial regulatory protein, Fis family RY45_20925 PF00158 Sigma-54 interaction domain RY45_20925 PF00989 PAS fold RY45_20930 PF00465 Iron-containing alcohol dehydrogenase RY45_20935 PF03610 PTS system fructose IIA component RY45_20935 PF05524 PEP-utilising enzyme, N-terminal RY45_20935 PF00391 PEP-utilising enzyme, mobile domain RY45_20935 PF00381 PTS HPr component phosphorylation site RY45_20940 PF02734 DAK2 domain RY45_20945 PF02733 Dak1 domain RY45_20955 PF00860 Permease family RY45_20995 PF00009 Elongation factor Tu GTP binding domain RY45_20995 PF03143 Elongation factor Tu C-terminal domain RY45_20995 PF03144 Elongation factor Tu domain 2 RY45_21005 PF00177 Ribosomal protein S7p/S5e RY45_21015 PF04077 DsrH like protein RY45_21020 PF02635 DsrE/DsrF-like family RY45_21025 PF02635 DsrE/DsrF-like family RY45_21030 PF01042 Endoribonuclease L-PSP RY45_21035 PF08348 YheO-like PAS domain RY45_21035 PF13309 HTH domain RY45_21040 PF04997 RNA polymerase Rpb1, domain 1 RY45_21040 PF00623 RNA polymerase Rpb1, domain 2 RY45_21040 PF04998 RNA polymerase Rpb1, domain 5 RY45_21040 PF05000 RNA polymerase Rpb1, domain 4 RY45_21040 PF04983 RNA polymerase Rpb1, domain 3 RY45_21045 PF04565 RNA polymerase Rpb2, domain 3 RY45_21045 PF04560 RNA polymerase Rpb2, domain 7 RY45_21045 PF04563 RNA polymerase beta subunit RY45_21045 PF04561 RNA polymerase Rpb2, domain 2 RY45_21045 PF00562 RNA polymerase Rpb2, domain 6 RY45_21045 PF10385 RNA polymerase beta subunit external 1 domain RY45_21050 PF00542 Ribosomal protein L7/L12 C-terminal domain RY45_21050 PF16320 Ribosomal protein L7/L12 dimerisation domain RY45_21055 PF00466 Ribosomal protein L10 RY45_21060 PF00687 Ribosomal protein L1p/L10e family RY45_21065 PF03946 Ribosomal protein L11, N-terminal domain RY45_21065 PF00298 Ribosomal protein L11, RNA binding domain RY45_21070 PF00467 KOW motif RY45_21070 PF02357 Transcription termination factor nusG RY45_21075 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RY45_21085 PF00009 Elongation factor Tu GTP binding domain RY45_21085 PF03144 Elongation factor Tu domain 2 RY45_21085 PF03143 Elongation factor Tu C-terminal domain RY45_21100 PF00485 Phosphoribulokinase / Uridine kinase family RY45_21105 PF03099 Biotin/lipoate A/B protein ligase family RY45_21105 PF02237 Biotin protein ligase C terminal domain RY45_21105 PF08279 HTH domain RY45_21110 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RY45_21110 PF01565 FAD binding domain RY45_21115 PF02080 TrkA-C domain RY45_21115 PF02254 TrkA-N domain RY45_21120 PF02386 Cation transport protein RY45_21125 PF01751 Toprim domain RY45_21125 PF01131 DNA topoisomerase RY45_21130 PF03264 NapC/NirT cytochrome c family, N-terminal region RY45_21135 PF00384 Molybdopterin oxidoreductase RY45_21135 PF18364 Molybdopterin oxidoreductase N-terminal domain RY45_21135 PF01568 Molydopterin dinucleotide binding domain RY45_21145 PF08918 PhoQ Sensor RY45_21145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_21150 PF00072 Response regulator receiver domain RY45_21150 PF00486 Transcriptional regulatory protein, C terminal RY45_21165 PF01794 Ferric reductase like transmembrane component RY45_21170 PF00174 Oxidoreductase molybdopterin binding domain RY45_21175 PF06496 Protein of unknown function (DUF1097) RY45_21180 PF00072 Response regulator receiver domain RY45_21180 PF00158 Sigma-54 interaction domain RY45_21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_21190 PF00512 His Kinase A (phospho-acceptor) domain RY45_21205 PF00571 CBS domain RY45_21205 PF00478 IMP dehydrogenase / GMP reductase domain RY45_21210 PF10063 Uncharacterized integral membrane protein (DUF2301) RY45_21220 PF01037 Lrp/AsnC ligand binding domain RY45_21225 PF03590 Aspartate-ammonia ligase RY45_21235 PF07724 AAA domain (Cdc48 subfamily) RY45_21235 PF17871 AAA lid domain RY45_21235 PF02861 Clp amino terminal domain, pathogenicity island component RY45_21235 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_21235 PF00004 ATPase family associated with various cellular activities (AAA) RY45_21245 PF01479 S4 domain RY45_21245 PF00849 RNA pseudouridylate synthase RY45_21250 PF13525 Outer membrane lipoprotein RY45_21255 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_21255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_21260 PF00375 Sodium:dicarboxylate symporter family RY45_21265 PF03313 Serine dehydratase alpha chain RY45_21275 PF02233 NAD(P) transhydrogenase beta subunit RY45_21280 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RY45_21280 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RY45_21280 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RY45_21285 PF00465 Iron-containing alcohol dehydrogenase RY45_21290 PF12833 Helix-turn-helix domain RY45_21290 PF06719 AraC-type transcriptional regulator N-terminus RY45_21295 PF08212 Lipocalin-like domain RY45_21300 PF02743 Cache domain RY45_21300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_21300 PF00672 HAMP domain RY45_21305 PF02666 Phosphatidylserine decarboxylase RY45_21320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RY45_21320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RY45_21325 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain RY45_21325 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain RY45_21330 PF01316 Arginine repressor, DNA binding domain RY45_21330 PF02863 Arginine repressor, C-terminal domain RY45_21335 PF03606 C4-dicarboxylate anaerobic carrier RY45_21340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RY45_21340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RY45_21345 PF00696 Amino acid kinase family RY45_21365 PF00672 HAMP domain RY45_21365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_21365 PF02743 Cache domain RY45_21370 PF02653 Branched-chain amino acid transport system / permease component RY45_21375 PF00005 ABC transporter RY45_21380 PF13407 Periplasmic binding protein domain RY45_21385 PF02837 Glycosyl hydrolases family 2, sugar binding domain RY45_21385 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RY45_21385 PF00703 Glycosyl hydrolases family 2 RY45_21385 PF16353 Domain of unknown function(DUF4981) RY45_21385 PF02929 Beta galactosidase small chain RY45_21390 PF00356 Bacterial regulatory proteins, lacI family RY45_21395 PF16363 GDP-mannose 4,6 dehydratase RY45_21400 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RY45_21400 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RY45_21405 PF00288 GHMP kinases N terminal domain RY45_21405 PF08544 GHMP kinases C terminal RY45_21405 PF10509 Galactokinase galactose-binding signature RY45_21410 PF01263 Aldose 1-epimerase RY45_21415 PF00248 Aldo/keto reductase family RY45_21420 PF02673 Bacitracin resistance protein BacA RY45_21425 PF12973 ChrR Cupin-like domain RY45_21430 PF04545 Sigma-70, region 4 RY45_21430 PF04542 Sigma-70 region 2 RY45_21440 PF03485 Arginyl tRNA synthetase N terminal domain RY45_21440 PF00750 tRNA synthetases class I (R) RY45_21440 PF05746 DALR anticodon binding domain RY45_21450 PF00227 Proteasome subunit RY45_21455 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_21455 PF07724 AAA domain (Cdc48 subfamily) RY45_21455 PF00004 ATPase family associated with various cellular activities (AAA) RY45_21460 PF07690 Major Facilitator Superfamily RY45_21465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_21465 PF03466 LysR substrate binding domain RY45_21470 PF04324 BFD-like [2Fe-2S] binding domain RY45_21470 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_21470 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_21470 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_21470 PF18267 Rubredoxin NAD+ reductase C-terminal domain RY45_21475 PF13806 Rieske-like [2Fe-2S] domain RY45_21480 PF01226 Formate/nitrite transporter RY45_21485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_21485 PF14824 Sirohaem biosynthesis protein central RY45_21485 PF10414 Sirohaem synthase dimerisation region RY45_21490 PF01769 Divalent cation transporter RY45_21490 PF00571 CBS domain RY45_21490 PF03448 MgtE intracellular N domain RY45_21495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_21495 PF00672 HAMP domain RY45_21500 PF03737 Aldolase/RraA RY45_21505 PF02592 Putative vitamin uptake transporter RY45_21515 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RY45_21520 PF00034 Cytochrome c RY45_21525 PF00270 DEAD/DEAH box helicase RY45_21525 PF00570 HRDC domain RY45_21525 PF00271 Helicase conserved C-terminal domain RY45_21525 PF09382 RQC domain RY45_21525 PF16124 RecQ zinc-binding RY45_21530 PF03061 Thioesterase superfamily RY45_21545 PF03475 3-alpha domain RY45_21545 PF03473 MOSC domain RY45_21550 PF00528 Binding-protein-dependent transport system inner membrane component RY45_21555 PF00528 Binding-protein-dependent transport system inner membrane component RY45_21560 PF00005 ABC transporter RY45_21560 PF08402 TOBE domain RY45_21565 PF13416 Bacterial extracellular solute-binding protein RY45_21570 PF13416 Bacterial extracellular solute-binding protein RY45_21575 PF00202 Aminotransferase class-III RY45_21580 PF00120 Glutamine synthetase, catalytic domain RY45_21585 PF01258 Prokaryotic dksA/traR C4-type zinc finger RY45_21600 PF05981 CreA protein RY45_21605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_21605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_21610 PF00012 Hsp70 protein RY45_21625 PF02903 Alpha amylase, N-terminal ig-like domain RY45_21625 PF00128 Alpha amylase, catalytic domain RY45_21630 PF02719 Polysaccharide biosynthesis protein RY45_21635 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RY45_21640 PF00391 PEP-utilising enzyme, mobile domain RY45_21640 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RY45_21655 PF00535 Glycosyl transferase family 2 RY45_21670 PF13193 AMP-binding enzyme C-terminal domain RY45_21670 PF00501 AMP-binding enzyme RY45_21690 PF02348 Cytidylyltransferase RY45_21700 PF03102 NeuB family RY45_21700 PF08666 SAF domain RY45_21720 PF16254 Domain of unknown function (DUF4910) RY45_21720 PF09940 Domain of unknown function (DUF2172) RY45_21720 PF16221 winged helix-turn-helix RY45_21755 PF05958 tRNA (Uracil-5-)-methyltransferase RY45_21760 PF00486 Transcriptional regulatory protein, C terminal RY45_21760 PF00072 Response regulator receiver domain RY45_21765 PF00672 HAMP domain RY45_21765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_21765 PF00512 His Kinase A (phospho-acceptor) domain RY45_21775 PF03949 Malic enzyme, NAD binding domain RY45_21775 PF00390 Malic enzyme, N-terminal domain RY45_21780 PF13460 NAD(P)H-binding RY45_21780 PF11066 Protein of unknown function (DUF2867) RY45_21785 PF01197 Ribosomal protein L31 RY45_21790 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RY45_21790 PF18074 Primosomal protein N C-terminal domain RY45_21790 PF17764 3′ DNA-binding domain (3′BD) RY45_21790 PF00271 Helicase conserved C-terminal domain RY45_21790 PF00270 DEAD/DEAH box helicase RY45_21800 PF00440 Bacterial regulatory proteins, tetR family RY45_21810 PF00691 OmpA family RY45_21810 PF01389 OmpA-like transmembrane domain RY45_21815 PF00585 C-terminal regulatory domain of Threonine dehydratase RY45_21815 PF00291 Pyridoxal-phosphate dependent enzyme RY45_21820 PF00920 Dehydratase family RY45_21825 PF01063 Amino-transferase class IV RY45_21835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_21835 PF00205 Thiamine pyrophosphate enzyme, central domain RY45_21835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RY45_21840 PF01078 Magnesium chelatase, subunit ChlI RY45_21840 PF13335 Magnesium chelatase, subunit ChlI C-terminal RY45_21845 PF01553 Acyltransferase RY45_21850 PF01553 Acyltransferase RY45_21855 PF04463 Protein of unknown function (DUF523) RY45_21865 PF00857 Isochorismatase family RY45_21870 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RY45_21870 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RY45_21880 PF00005 ABC transporter RY45_21885 PF00528 Binding-protein-dependent transport system inner membrane component RY45_21890 PF01323 DSBA-like thioredoxin domain RY45_21895 PF01636 Phosphotransferase enzyme family RY45_21900 PF13746 4Fe-4S dicluster domain RY45_21900 PF12801 4Fe-4S binding domain RY45_21900 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RY45_21905 PF06288 Protein of unknown function (DUF1040) RY45_21910 PF00563 EAL domain RY45_21910 PF00360 Phytochrome region RY45_21910 PF00990 Diguanylate cyclase, GGDEF domain RY45_21910 PF01590 GAF domain RY45_21915 PF09278 MerR, DNA binding RY45_21915 PF00376 MerR family regulatory protein RY45_21920 PF00403 Heavy-metal-associated domain RY45_21925 PF00156 Phosphoribosyl transferase domain RY45_21930 PF03725 3' exoribonuclease family, domain 2 RY45_21930 PF01138 3' exoribonuclease family, domain 1 RY45_21935 PF08340 Domain of unknown function (DUF1732) RY45_21935 PF03755 YicC-like family, N-terminal region RY45_21955 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) RY45_21970 PF01370 NAD dependent epimerase/dehydratase family RY45_21975 PF08360 QacR-like protein, C-terminal region RY45_21975 PF00440 Bacterial regulatory proteins, tetR family RY45_21980 PF00155 Aminotransferase class I and II RY45_21985 PF08240 Alcohol dehydrogenase GroES-like domain RY45_21985 PF00107 Zinc-binding dehydrogenase RY45_21990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RY45_21995 PF00563 EAL domain RY45_21995 PF03707 Bacterial signalling protein N terminal repeat RY45_21995 PF00990 Diguanylate cyclase, GGDEF domain RY45_22000 PF00580 UvrD/REP helicase N-terminal domain RY45_22000 PF13361 UvrD-like helicase C-terminal domain RY45_22005 PF00266 Aminotransferase class-V RY45_22010 PF02657 Fe-S metabolism associated domain RY45_22015 PF00899 ThiF family RY45_22055 PF03544 Gram-negative bacterial TonB protein C-terminal RY45_22060 PF02472 Biopolymer transport protein ExbD/TolR RY45_22065 PF01618 MotA/TolQ/ExbB proton channel family RY45_22070 PF01618 MotA/TolQ/ExbB proton channel family RY45_22080 PF00196 Bacterial regulatory proteins, luxR family RY45_22080 PF03472 Autoinducer binding domain RY45_22085 PF01380 SIS domain RY45_22090 PF00455 DeoR C terminal sensor domain RY45_22090 PF08220 DeoR-like helix-turn-helix domain RY45_22095 PF00486 Transcriptional regulatory protein, C terminal RY45_22095 PF00072 Response regulator receiver domain RY45_22100 PF00672 HAMP domain RY45_22100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_22100 PF00512 His Kinase A (phospho-acceptor) domain RY45_22105 PF00905 Penicillin binding protein transpeptidase domain RY45_22110 PF06123 Inner membrane protein CreD RY45_22115 PF12804 MobA-like NTP transferase domain RY45_22115 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_22115 PF14602 Hexapeptide repeat of succinyl-transferase RY45_22120 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RY45_22120 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RY45_22125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_22125 PF02874 ATP synthase alpha/beta family, beta-barrel domain RY45_22130 PF00231 ATP synthase RY45_22135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_22135 PF02874 ATP synthase alpha/beta family, beta-barrel domain RY45_22135 PF00306 ATP synthase alpha/beta chain, C terminal domain RY45_22140 PF00213 ATP synthase delta (OSCP) subunit RY45_22145 PF00430 ATP synthase B/B' CF(0) RY45_22150 PF00137 ATP synthase subunit C RY45_22155 PF00119 ATP synthase A chain RY45_22165 PF02195 ParB-like nuclease domain RY45_22165 PF17762 HTH domain found in ParB protein RY45_22170 PF13614 AAA domain RY45_22175 PF02527 rRNA small subunit methyltransferase G RY45_22180 PF01134 Glucose inhibited division protein A RY45_22180 PF13932 GidA associated domain RY45_22185 PF00258 Flavodoxin RY45_22190 PF00593 TonB dependent receptor RY45_22190 PF07715 TonB-dependent Receptor Plug Domain RY45_22195 PF00005 ABC transporter RY45_22200 PF00005 ABC transporter RY45_22210 PF01032 FecCD transport family RY45_22215 PF12631 MnmE helical domain RY45_22215 PF01926 50S ribosome-binding GTPase RY45_22215 PF10396 GTP-binding protein TrmE N-terminus RY45_22220 PF02096 60Kd inner membrane protein RY45_22220 PF14849 YidC periplasmic domain RY45_22225 PF00825 Ribonuclease P RY45_22230 PF00468 Ribosomal protein L34 RY45_22240 PF00528 Binding-protein-dependent transport system inner membrane component RY45_22245 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_22280 PF01076 Plasmid recombination enzyme RY45_22290 PF01402 Ribbon-helix-helix protein, copG family RY45_22330 PF13614 AAA domain RY45_22335 PF05016 ParE toxin of type II toxin-antitoxin system, parDE