RY45_00005 IPR001957 Chromosomal replication control, initiator DnaA RY45_00005 IPR003593 AAA+ ATPase domain RY45_00005 IPR010921 Trp repressor/replication initiator RY45_00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal RY45_00005 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) RY45_00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site RY45_00005 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_00005 IPR024633 DnaA N-terminal domain RY45_00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00005 IPR038454 RY45_00005 RY45_00010 IPR001001 DNA polymerase III, beta chain RY45_00010 IPR022634 DNA polymerase III, beta chain, N-terminal RY45_00010 IPR022635 DNA polymerase III, beta chain, C-terminal RY45_00010 IPR022637 DNA polymerase III, beta chain, central RY45_00015 IPR001238 DNA-binding, RecF RY45_00015 IPR003395 RecF/RecN/SMC, N-terminal RY45_00015 IPR018078 DNA-binding, RecF, conserved site RY45_00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00020 IPR000565 DNA topoisomerase, type IIA, subunit B RY45_00020 IPR001241 DNA topoisomerase, type IIA RY45_00020 IPR002288 DNA gyrase B subunit, C-terminal RY45_00020 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_00020 IPR006171 Toprim domain RY45_00020 IPR011557 DNA gyrase, subunit B RY45_00020 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 RY45_00020 IPR013759 DNA topoisomerase, type IIA, central domain RY45_00020 IPR013760 DNA topoisomerase, type IIA-like domain RY45_00020 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_00020 IPR018522 DNA topoisomerase, type IIA, conserved site RY45_00020 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_00020 IPR036890 RY45_00020 RY45_00025 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_00025 IPR026275 Glyoxalase/bleomycin resistance protein/dioxygenase RY45_00025 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_00030 IPR013196 Helix-turn-helix, type 11 RY45_00030 IPR026881 WYL domain RY45_00030 IPR036388 RY45_00030 RY45_00030 IPR036390 RY45_00030 RY45_00035 IPR002068 Alpha crystallin/Hsp20 domain RY45_00035 IPR008978 HSP20-like chaperone RY45_00040 IPR002068 Alpha crystallin/Hsp20 domain RY45_00040 IPR008978 HSP20-like chaperone RY45_00045 IPR004839 Aminotransferase, class I/classII RY45_00045 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_00045 IPR015424 Pyridoxal phosphate-dependent transferase RY45_00050 IPR010916 TonB box, conserved site RY45_00055 IPR003313 AraC-type arabinose-binding/dimerisation domain RY45_00055 IPR009057 Homeodomain-like RY45_00055 IPR011051 RmlC-like cupin domain RY45_00055 IPR014710 RmlC-like jelly roll fold RY45_00055 IPR018060 DNA binding HTH domain, AraC-type RY45_00060 IPR011701 Major facilitator superfamily RY45_00060 IPR036259 RY45_00060 RY45_00065 IPR001789 Signal transduction response regulator, receiver domain RY45_00065 IPR001867 Signal transduction response regulator, C-terminal RY45_00065 IPR011006 CheY-like superfamily RY45_00065 IPR016032 Signal transduction response regulator, C-terminal effector RY45_00065 IPR036388 RY45_00065 RY45_00070 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_00070 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_00070 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal RY45_00070 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_00070 IPR025201 Sensor protein KdpD, transmembrane domain RY45_00070 IPR029016 GAF domain-like RY45_00070 IPR036097 RY45_00070 RY45_00070 IPR036890 RY45_00070 RY45_00070 IPR038318 RY45_00070 RY45_00075 IPR003820 Potassium-transporting ATPase C chain RY45_00080 IPR001757 Cation-transporting P-type ATPase RY45_00080 IPR006391 Potassium-transporting P-type ATPase, B chain, subfamily IA RY45_00080 IPR008250 P-type ATPase, A domain RY45_00080 IPR018303 P-type ATPase, phosphorylation site RY45_00080 IPR023298 P-type ATPase, transmembrane domain RY45_00080 IPR023299 P-type ATPase, cytoplasmic domain N RY45_00080 IPR036412 RY45_00080 RY45_00085 IPR004623 Potassium-transporting ATPase A chain RY45_00090 IPR001100 RY45_00090 RY45_00090 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_00090 IPR006322 Glutathione reductase, eukaryote/bacterial RY45_00090 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RY45_00090 IPR016156 FAD/NAD-linked reductase, dimerisation domain RY45_00090 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_00090 IPR036188 RY45_00090 RY45_00095 IPR000014 PAS domain RY45_00095 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_00095 IPR003660 HAMP linker domain RY45_00095 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_00095 IPR033414 RY45_00095 RY45_00095 IPR035965 RY45_00095 RY45_00095 IPR036890 RY45_00095 RY45_00100 IPR001036 Acriflavin resistance protein RY45_00100 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_00105 IPR006143 RND efflux pump, membrane fusion protein RY45_00105 IPR032317 RY45_00105 RY45_00110 IPR001647 DNA-binding HTH domain, TetR-type RY45_00110 IPR009057 Homeodomain-like RY45_00110 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_00110 IPR032551 RY45_00110 RY45_00135 IPR000772 Ricin B lectin domain RY45_00135 IPR035992 RY45_00135 RY45_00140 IPR001697 Pyruvate kinase RY45_00140 IPR011037 Pyruvate kinase-like, insert domain RY45_00140 IPR015793 Pyruvate kinase, barrel RY45_00140 IPR015806 Pyruvate kinase, beta-barrel insert domain RY45_00140 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_00145 IPR000849 Sugar phosphate transporter RY45_00145 IPR011701 Major facilitator superfamily RY45_00145 IPR036259 RY45_00145 RY45_00155 IPR000014 PAS domain RY45_00155 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_00155 IPR003660 HAMP linker domain RY45_00155 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_00155 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_00155 IPR017116 Signal transduction histidine kinase, PgtB RY45_00155 IPR035965 RY45_00155 RY45_00155 IPR036097 RY45_00155 RY45_00155 IPR036890 RY45_00155 RY45_00160 IPR001789 Signal transduction response regulator, receiver domain RY45_00160 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_00160 IPR002197 DNA binding HTH domain, Fis-type RY45_00160 IPR009057 Homeodomain-like RY45_00160 IPR011006 CheY-like superfamily RY45_00160 IPR025944 Sigma-54 interaction domain, conserved site RY45_00160 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00170 IPR000150 Cof protein RY45_00170 IPR006379 HAD-superfamily hydrolase, subfamily IIB RY45_00170 IPR023214 HAD-like domain RY45_00170 IPR036412 RY45_00170 RY45_00175 IPR022742 Putative lysophospholipase RY45_00175 IPR029058 Alpha/Beta hydrolase fold RY45_00180 IPR001451 Bacterial transferase hexapeptide repeat RY45_00180 IPR011004 Trimeric LpxA-like RY45_00180 IPR018357 Hexapeptide transferase, conserved site RY45_00185 IPR001537 tRNA/rRNA methyltransferase, SpoU type RY45_00185 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal RY45_00185 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_00185 IPR029028 Alpha/beta knot methyltransferases RY45_00185 IPR033671 RY45_00185 RY45_00190 IPR002912 ACT domain RY45_00190 IPR003607 HD/PDEase domain RY45_00190 IPR004095 TGS RY45_00190 IPR004811 RelA/SpoT family RY45_00190 IPR007685 RelA/SpoT RY45_00190 IPR012675 Beta-grasp domain RY45_00190 IPR012676 TGS-like RY45_00195 IPR003716 DNA-directed RNA polymerase, omega subunit RY45_00195 IPR006110 RNA polymerase, subunit omega/K/RPB6 RY45_00195 IPR012293 RNA polymerase subunit, RPB6/omega RY45_00195 IPR036161 RY45_00195 RY45_00200 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RY45_00200 IPR017665 Guanylate kinase RY45_00200 IPR020590 Guanylate kinase, conserved site RY45_00200 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00205 IPR002201 Glycosyl transferase, family 9 RY45_00210 IPR011009 Protein kinase-like domain RY45_00210 IPR022826 3-deoxy-D-manno-octulosonic acid kinase RY45_00215 IPR000160 GGDEF domain RY45_00215 IPR013655 PAS fold-3 RY45_00215 IPR029787 Nucleotide cyclase RY45_00215 IPR035965 RY45_00215 RY45_00220 IPR000620 Drug/metabolite transporter RY45_00220 IPR004779 Carboxylate/Amino Acid/Amine Transporter RY45_00230 IPR000620 Drug/metabolite transporter RY45_00235 IPR000847 Transcription regulator HTH, LysR RY45_00235 IPR005119 LysR, substrate-binding RY45_00235 IPR036388 RY45_00235 RY45_00235 IPR036390 RY45_00235 RY45_00240 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_00240 IPR002305 Aminoacyl-tRNA synthetase, class Ic RY45_00240 IPR002306 Tryptophan-tRNA ligase RY45_00240 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_00245 IPR006015 Universal stress protein A RY45_00245 IPR006016 UspA RY45_00245 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_00250 IPR010758 Trans-2-enoyl-CoA reductase RY45_00250 IPR024906 Enoyl reductase FAD binding domain RY45_00250 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative RY45_00255 IPR000160 GGDEF domain RY45_00255 IPR011990 Tetratricopeptide-like helical domain RY45_00255 IPR029787 Nucleotide cyclase RY45_00260 IPR008331 Ferritin/DPS protein domain RY45_00260 IPR009078 Ferritin-like superfamily RY45_00260 IPR012347 Ferritin-related RY45_00265 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RY45_00265 IPR023166 HI0933 insert-like domain RY45_00265 IPR036188 RY45_00265 RY45_00270 IPR011701 Major facilitator superfamily RY45_00270 IPR036259 RY45_00270 RY45_00275 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_00280 IPR008962 PapD-like RY45_00280 IPR013783 Immunoglobulin-like fold RY45_00280 IPR016147 PapD, N-terminal, bacterial RY45_00290 IPR031917 RY45_00290 RY45_00290 IPR032636 RY45_00290 RY45_00295 IPR008962 PapD-like RY45_00295 IPR013783 Immunoglobulin-like fold RY45_00300 IPR016514 Fimbrial protein MatB RY45_00300 IPR038478 RY45_00300 RY45_00305 IPR000792 Transcription regulator LuxR, C-terminal RY45_00305 IPR001789 Signal transduction response regulator, receiver domain RY45_00305 IPR011006 CheY-like superfamily RY45_00305 IPR016032 Signal transduction response regulator, C-terminal effector RY45_00310 IPR001638 Extracellular solute-binding protein, family 3 RY45_00310 IPR001789 Signal transduction response regulator, receiver domain RY45_00310 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_00310 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_00310 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_00310 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_00310 IPR011006 CheY-like superfamily RY45_00310 IPR035965 RY45_00310 RY45_00310 IPR036097 RY45_00310 RY45_00310 IPR036641 RY45_00310 RY45_00310 IPR036890 RY45_00310 RY45_00320 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_00320 IPR010559 Signal transduction histidine kinase, internal region RY45_00320 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region RY45_00320 IPR029016 GAF domain-like RY45_00320 IPR036890 RY45_00320 RY45_00325 IPR001789 Signal transduction response regulator, receiver domain RY45_00325 IPR007492 LytTR DNA-binding domain RY45_00325 IPR011006 CheY-like superfamily RY45_00330 IPR011701 Major facilitator superfamily RY45_00330 IPR036259 RY45_00330 RY45_00335 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RY45_00335 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit RY45_00335 IPR011054 Rudiment single hybrid motif RY45_00335 IPR013815 ATP-grasp fold, subdomain 1 RY45_00335 IPR016185 Pre-ATP-grasp domain RY45_00340 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain RY45_00340 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE RY45_00340 IPR033747 RY45_00340 RY45_00340 IPR035893 RY45_00340 RY45_00345 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_00345 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_00350 IPR010293 Protein of unknown function DUF897 RY45_00360 IPR009734 Myoviridae, GpU RY45_00360 IPR016912 Bacteriophage P2, GpU RY45_00365 IPR010090 Phage tail tape measure protein RY45_00370 IPR009493 Burkholderia phage phiE202, Gp27 RY45_00375 IPR019289 Bacteriophage tail protein Gp41, putative RY45_00380 IPR006498 Bacteriophage P2, FII, major tail tube protein RY45_00385 IPR020287 Tail sheath protein, C-terminal domain RY45_00385 IPR035089 RY45_00385 RY45_00390 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly RY45_00395 IPR022225 Phage tail fibre protein RY45_00400 IPR006521 Tail protein I RY45_00405 IPR006949 Baseplate assembly protein J-like, predicted RY45_00405 IPR014507 Baseplate assembly protein J, predicted RY45_00410 IPR007048 GpW/Gp25/anti-adapter protein IraD RY45_00415 IPR006531 Gp5 N-terminal RY45_00415 IPR013046 Bacteriophage Mu/P2, baseplate assembly RY45_00415 IPR037026 RY45_00415 RY45_00420 IPR006522 Phage virion morphogensis protein RY45_00425 IPR009678 Bacteriophage tail completion protein R RY45_00430 IPR020000 Bacteriophage P2, LysB RY45_00435 IPR002477 Peptidoglycan binding-like RY45_00435 IPR024408 Domain of unknown function DUF3380 RY45_00435 IPR036365 RY45_00435 RY45_00435 IPR036366 RY45_00435 RY45_00440 IPR008473 Bacteriophage D3, Orf90 RY45_00450 IPR032637 RY45_00450 RY45_00455 IPR000962 Zinc finger, DksA/TraR C4-type RY45_00460 IPR008861 Bacteriophage P2, GpX RY45_00460 IPR036779 RY45_00460 RY45_00465 IPR009225 Bacteriophage head completion protein GpL RY45_00470 IPR010270 Bacteriophage P2, GpM RY45_00475 IPR006441 Bacteriophage P2, GpN, major capsid RY45_00480 IPR009228 Capsid scaffolding protein GpO RY45_00485 IPR004921 Terminase, large subunit RY45_00485 IPR010332 ATPase terminase subunit, putative RY45_00485 IPR035421 RY45_00485 RY45_00490 IPR006430 Phage portal protein, PBSX family RY45_00490 IPR030935 RY45_00490 RY45_00500 IPR010982 Lambda repressor-like, DNA-binding domain RY45_00505 IPR021700 Protein of unknown function DUF3283 RY45_00520 IPR015947 PUA-like domain RY45_00520 IPR039440 RY45_00520 RY45_00535 IPR008766 Replication gene A protein RY45_00575 IPR025169 Protein of unknown function DUF3927 RY45_00580 IPR007791 Heat shock protein DnaJ-like protein DjlA RY45_00580 IPR029024 TerB-like RY45_00600 IPR009679 Bacteriophage 186, CII RY45_00610 IPR001387 Cro/C1-type helix-turn-helix domain RY45_00610 IPR010744 Bacteriophage CI repressor RY45_00610 IPR010982 Lambda repressor-like, DNA-binding domain RY45_00610 IPR015927 Peptidase S24/S26A/S26B/S26C RY45_00610 IPR036286 RY45_00610 RY45_00620 IPR002104 Integrase, catalytic RY45_00620 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_00620 IPR013762 Integrase-like, catalytic core RY45_00625 IPR000847 Transcription regulator HTH, LysR RY45_00625 IPR005119 LysR, substrate-binding RY45_00625 IPR036388 RY45_00625 RY45_00625 IPR036390 RY45_00625 RY45_00630 IPR000531 TonB-dependent receptor, beta-barrel RY45_00630 IPR010101 TonB-dependent vitamin B12 transporter BtuB RY45_00630 IPR012910 TonB-dependent receptor, plug RY45_00630 IPR036942 RY45_00630 RY45_00630 IPR037066 RY45_00630 RY45_00645 IPR000504 RNA recognition motif domain RY45_00645 IPR012677 Nucleotide-binding, alpha-beta plait RY45_00645 IPR035979 RY45_00645 RY45_00680 IPR011059 Metal-dependent hydrolase, composite domain RY45_00680 IPR013108 Amidohydrolase 3 RY45_00680 IPR032466 RY45_00680 RY45_00685 IPR003691 Putative fluoride ion transporter CrcB RY45_00690 IPR004033 UbiE/COQ5 methyltransferase RY45_00690 IPR023576 UbiE/COQ5 methyltransferase, conserved site RY45_00690 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_00695 IPR003033 SCP2 sterol-binding domain RY45_00695 IPR036527 RY45_00695 RY45_00700 IPR004147 UbiB domain RY45_00700 IPR010232 Probable protein kinase UbiB RY45_00700 IPR011009 Protein kinase-like domain RY45_00705 IPR003369 Sec-independent protein translocase protein TatA/B/E RY45_00705 IPR006312 Sec-independent protein translocase protein TatA/E RY45_00710 IPR003369 Sec-independent protein translocase protein TatA/B/E RY45_00710 IPR018448 Twin-arginine translocation protein TatB RY45_00715 IPR002033 Sec-independent periplasmic protein translocase TatC RY45_00715 IPR019820 Sec-independent periplasmic protein translocase, conserved site RY45_00720 IPR001130 TatD family RY45_00720 IPR032466 RY45_00720 RY45_00725 IPR001731 Porphobilinogen synthase RY45_00725 IPR013785 Aldolase-type TIM barrel RY45_00725 IPR030656 RY45_00725 RY45_00730 IPR001567 Peptidase M3A/M3B RY45_00730 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RY45_00735 IPR000014 PAS domain RY45_00735 IPR000160 GGDEF domain RY45_00735 IPR001610 PAC motif RY45_00735 IPR001633 EAL domain RY45_00735 IPR013767 PAS fold RY45_00735 IPR029016 GAF domain-like RY45_00735 IPR029787 Nucleotide cyclase RY45_00735 IPR035919 RY45_00735 RY45_00735 IPR035965 RY45_00735 RY45_00740 IPR007536 Ribosomal RNA small subunit methyltransferase J RY45_00740 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_00745 IPR009778 Modulator of Rho-dependent transcription termination RY45_00745 IPR023534 Rof/RNase P-like RY45_00745 IPR038626 RY45_00745 RY45_00750 IPR025491 Domain of unknown function DUF4382 RY45_00755 IPR003695 Ppx/GppA phosphatase RY45_00755 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase RY45_00755 IPR030673 RY45_00755 RY45_00760 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_00760 IPR001650 Helicase, C-terminal RY45_00760 IPR011545 DEAD/DEAH box helicase domain RY45_00760 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_00760 IPR023554 RNA helicase, ATP-dependent, RhlB-type RY45_00760 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00765 IPR005746 Thioredoxin RY45_00765 IPR013766 Thioredoxin domain RY45_00765 IPR017937 Thioredoxin, conserved site RY45_00765 IPR036249 RY45_00765 RY45_00770 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RY45_00770 IPR003593 AAA+ ATPase domain RY45_00770 IPR004665 Transcription termination factor Rho RY45_00770 IPR011112 Rho termination factor, N-terminal RY45_00770 IPR011113 Rho termination factor, RNA-binding RY45_00770 IPR011129 Cold shock protein RY45_00770 IPR012340 Nucleic acid-binding, OB-fold RY45_00770 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00770 IPR036269 RY45_00770 RY45_00780 IPR002830 UbiD decarboxylyase family RY45_00780 IPR023677 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RY45_00785 IPR001221 Phenol hydroxylase reductase RY45_00785 IPR001433 Oxidoreductase FAD/NAD(P)-binding RY45_00785 IPR017938 Riboflavin synthase-like beta-barrel RY45_00785 IPR039261 RY45_00785 RY45_00790 IPR007475 Membrane fusogenic activity RY45_00795 IPR020009 Extracellular lipase, Pla-1/cef family RY45_00795 IPR025920 Bacterial virulence factor lipase, N-terminal domain RY45_00795 IPR029058 Alpha/Beta hydrolase fold RY45_00800 IPR022732 Peptidase S54, GlpG peptidase, N-terminal RY45_00800 IPR022764 Peptidase S54, rhomboid domain RY45_00800 IPR023662 Rhomboid protease GlpG RY45_00800 IPR035952 RY45_00800 RY45_00800 IPR038236 RY45_00800 RY45_00805 IPR001763 Rhodanese-like domain RY45_00805 IPR023695 Thiosulfate sulfurtransferase, bacterial RY45_00805 IPR036873 RY45_00805 RY45_00810 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_00815 IPR003313 AraC-type arabinose-binding/dimerisation domain RY45_00815 IPR009057 Homeodomain-like RY45_00815 IPR018060 DNA binding HTH domain, AraC-type RY45_00815 IPR018062 HTH domain AraC-type, conserved site RY45_00815 IPR020449 Transcription regulator HTH, AraC- type RY45_00815 IPR037923 RY45_00815 RY45_00820 IPR003439 ABC transporter-like RY45_00820 IPR003593 AAA+ ATPase domain RY45_00820 IPR017871 ABC transporter, conserved site RY45_00820 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00820 IPR029224 Pilus-assembly complex, chaperone PapJ RY45_00820 IPR030660 RY45_00820 RY45_00825 IPR003439 ABC transporter-like RY45_00825 IPR003593 AAA+ ATPase domain RY45_00825 IPR017871 ABC transporter, conserved site RY45_00825 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00825 IPR032823 RY45_00825 RY45_00830 IPR001851 ABC transporter, permease RY45_00830 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal RY45_00835 IPR001851 ABC transporter, permease RY45_00840 IPR000709 Leu/Ile/Val-binding protein RY45_00840 IPR028081 Leucine-binding protein domain RY45_00840 IPR028082 Periplasmic binding protein-like I RY45_00845 IPR000843 Transcription regulator HTH, LacI RY45_00845 IPR010982 Lambda repressor-like, DNA-binding domain RY45_00845 IPR028082 Periplasmic binding protein-like I RY45_00850 IPR001088 Glycoside hydrolase, family 4 RY45_00850 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal RY45_00850 IPR019802 Glycoside hydrolase, family 4, conserved site RY45_00850 IPR022616 Glycosyl hydrolase, family 4, C-terminal RY45_00850 IPR036291 RY45_00850 RY45_00855 IPR001996 Phosphotransferase system, IIB component, type 1 RY45_00855 IPR003352 Phosphotransferase system, EIIC RY45_00855 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component RY45_00855 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site RY45_00855 IPR036878 RY45_00855 RY45_00860 IPR000524 Transcription regulator HTH, GntR RY45_00860 IPR011663 UbiC transcription regulator-associated RY45_00860 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RY45_00860 IPR036388 RY45_00860 RY45_00860 IPR036390 RY45_00860 RY45_00865 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_00865 IPR003018 GAF domain RY45_00865 IPR003593 AAA+ ATPase domain RY45_00865 IPR009057 Homeodomain-like RY45_00865 IPR023944 Anaerobic nitric oxide reductase transcription regulator RY45_00865 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_00865 IPR025944 Sigma-54 interaction domain, conserved site RY45_00865 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00865 IPR029016 GAF domain-like RY45_00870 IPR001279 Beta-lactamase-like RY45_00870 IPR008254 Flavodoxin/nitric oxide synthase RY45_00870 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin RY45_00870 IPR024935 Rubredoxin domain RY45_00870 IPR029039 Flavoprotein-like RY45_00870 IPR036866 RY45_00870 RY45_00875 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_00875 IPR023961 Nitric oxide reductase FlRd-NAD(+) reductase RY45_00875 IPR036188 RY45_00875 RY45_00880 IPR014510 Tellurite resistance predicted, YeaR RY45_00880 IPR014710 RmlC-like jelly roll fold RY45_00880 IPR015392 Domain of unknown function DUF1971 RY45_00885 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_00885 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_00890 IPR013059 Tryptophan/tyrosine transporter RY45_00890 IPR018227 Tryptophan/tyrosine permease RY45_00895 IPR035093 RY45_00895 RY45_00900 IPR005416 Type III secretion chaperone SycE RY45_00900 IPR010261 Tir chaperone protein (CesT) family RY45_00905 IPR003537 Yersinia virulence determinant YopE RY45_00905 IPR014773 Virulence factor YopE uncharacterised domain RY45_00905 IPR037168 RY45_00905 RY45_00910 IPR019545 DM13 domain RY45_00920 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00925 IPR008909 DALR anticodon binding RY45_00925 IPR015944 Glycine-tRNA ligase, beta subunit RY45_00930 IPR002310 Glycine-tRNA ligase, alpha subunit RY45_00935 IPR004597 DNA-3-methyladenine glycosylase I RY45_00935 IPR005019 Methyladenine glycosylase RY45_00935 IPR011257 DNA glycosylase RY45_00940 IPR000868 Isochorismatase-like RY45_00940 IPR036380 RY45_00940 RY45_00945 IPR006664 Outer membrane protein, bacterial RY45_00945 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_00945 IPR006690 Outer membrane protein, OmpA-like, conserved site RY45_00945 IPR036737 RY45_00945 RY45_00945 IPR039567 RY45_00945 RY45_00950 IPR035959 RY45_00950 RY45_00955 IPR006175 YjgF/Yer057p/UK114 family RY45_00955 IPR035959 RY45_00955 RY45_00960 IPR001455 TusA-like domain RY45_00960 IPR022931 Sulphurtransferase TusA RY45_00960 IPR036868 RY45_00960 RY45_00970 IPR006059 Bacterial extracellular solute-binding, family 1 RY45_00975 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_00975 IPR003660 HAMP linker domain RY45_00975 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_00975 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_00975 IPR036097 RY45_00975 RY45_00975 IPR036890 RY45_00975 RY45_00980 IPR001789 Signal transduction response regulator, receiver domain RY45_00980 IPR001867 Signal transduction response regulator, C-terminal RY45_00980 IPR011006 CheY-like superfamily RY45_00980 IPR016032 Signal transduction response regulator, C-terminal effector RY45_00980 IPR036388 RY45_00980 RY45_00985 IPR002155 Thiolase RY45_00985 IPR012805 Acetyl-CoA C-acyltransferase FadA RY45_00985 IPR016039 Thiolase-like RY45_00985 IPR020610 Thiolase, active site RY45_00985 IPR020613 Thiolase, conserved site RY45_00985 IPR020615 Thiolase, acyl-enzyme intermediate active site RY45_00985 IPR020616 Thiolase, N-terminal RY45_00985 IPR020617 Thiolase, C-terminal RY45_00990 IPR001753 Crotonase superfamily RY45_00990 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RY45_00990 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RY45_00990 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site RY45_00990 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_00990 IPR012799 Fatty oxidation complex, alpha subunit FadB RY45_00990 IPR029045 ClpP/crotonase-like domain RY45_00990 IPR036291 RY45_00990 RY45_00995 IPR000873 AMP-dependent synthetase/ligase RY45_00995 IPR005914 Acetoacetyl-CoA synthase RY45_00995 IPR020845 AMP-binding, conserved site RY45_00995 IPR025110 AMP-binding enzyme C-terminal domain RY45_00995 IPR032387 RY45_00995 RY45_01000 IPR000994 Peptidase M24, structural domain RY45_01000 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RY45_01000 IPR022846 Xaa-Pro dipeptidase RY45_01000 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RY45_01000 IPR036005 RY45_01000 RY45_01005 IPR001498 Impact, N-terminal RY45_01005 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal RY45_01005 IPR015796 Impact family, bacterial/archaeal RY45_01005 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_01005 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site RY45_01005 IPR035647 RY45_01005 RY45_01005 IPR036956 RY45_01005 RY45_01010 IPR003445 Cation transporter RY45_01010 IPR004772 Potassium uptake protein TrkH family RY45_01015 IPR026816 Flavodoxin domain RY45_01015 IPR029039 Flavoprotein-like RY45_01040 IPR000182 GNAT domain RY45_01040 IPR003781 CoA-binding RY45_01040 IPR013815 ATP-grasp fold, subdomain 1 RY45_01040 IPR016102 Succinyl-CoA synthetase-like RY45_01040 IPR016181 Acyl-CoA N-acyltransferase RY45_01040 IPR032875 RY45_01040 RY45_01040 IPR036291 RY45_01040 RY45_01050 IPR001638 Extracellular solute-binding protein, family 3 RY45_01055 IPR000847 Transcription regulator HTH, LysR RY45_01055 IPR005119 LysR, substrate-binding RY45_01055 IPR036388 RY45_01055 RY45_01055 IPR036390 RY45_01055 RY45_01060 IPR000506 Acetohydroxy acid isomeroreductase C-terminal RY45_01060 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_01060 IPR013023 Acetohydroxy acid isomeroreductase RY45_01060 IPR013116 Acetohydroxy acid isomeroreductase, catalytic RY45_01060 IPR013328 Dehydrogenase, multihelical RY45_01060 IPR036291 RY45_01060 RY45_01065 IPR001672 Phosphoglucose isomerase (PGI) RY45_01065 IPR018189 Phosphoglucose isomerase, conserved site RY45_01065 IPR023096 Phosphoglucose isomerase, C-terminal RY45_01080 IPR006685 Mechanosensitive ion channel MscS RY45_01080 IPR008910 Conserved TM helix RY45_01080 IPR010920 Like-Sm (LSM) domain RY45_01080 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 RY45_01080 IPR011066 Mechanosensitive ion channel MscS, C-terminal RY45_01080 IPR023408 RY45_01080 RY45_01085 IPR001647 DNA-binding HTH domain, TetR-type RY45_01085 IPR009057 Homeodomain-like RY45_01085 IPR023769 Nucleoid occlusion factor SlmA RY45_01090 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase RY45_01090 IPR029054 dUTPase-like RY45_01090 IPR036157 RY45_01090 RY45_01095 IPR003382 Flavoprotein RY45_01095 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC RY45_01095 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal RY45_01095 IPR035929 RY45_01095 RY45_01095 IPR036551 RY45_01095 RY45_01100 IPR001405 RadC protein RY45_01100 IPR010994 RuvA domain 2-like RY45_01100 IPR020891 Uncharacterised protein family UPF0758, conserved site RY45_01100 IPR025657 RadC-like JAB domain RY45_01105 IPR001705 Ribosomal protein L33 RY45_01105 IPR011332 Zinc-binding ribosomal protein RY45_01105 IPR018264 Ribosomal protein L33, conserved site RY45_01105 IPR038584 RY45_01105 RY45_01115 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase RY45_01115 IPR010979 Ribosomal protein S13-like, H2TH RY45_01115 IPR012319 DNA glycosylase/AP lyase, catalytic domain RY45_01115 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding RY45_01115 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site RY45_01115 IPR020629 Formamidopyrimidine-DNA glycosylase RY45_01115 IPR035937 RY45_01115 RY45_01120 IPR007488 Protein of unknown function DUF535 RY45_01125 IPR001980 Coenzyme A biosynthesis protein RY45_01125 IPR004821 Cytidyltransferase-like domain RY45_01125 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_01130 IPR002201 Glycosyl transferase, family 9 RY45_01135 IPR001173 Glycosyltransferase 2-like RY45_01135 IPR029044 Nucleotide-diphospho-sugar transferases RY45_01140 IPR002201 Glycosyl transferase, family 9 RY45_01140 IPR011910 Lipopolysaccharide heptosyltransferase II RY45_01145 IPR001296 Glycosyl transferase, family 1 RY45_01145 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal RY45_01145 IPR038107 RY45_01145 RY45_01150 IPR004703 Phosphotransferase system, sugar-specific permease component RY45_01155 IPR003501 Phosphotransferase system, EIIB component, type 2/3 RY45_01155 IPR036095 RY45_01155 RY45_01160 IPR002178 PTS EIIA type-2 domain RY45_01160 IPR016152 Phosphotransferase/anion transporter RY45_01165 IPR000843 Transcription regulator HTH, LacI RY45_01165 IPR010982 Lambda repressor-like, DNA-binding domain RY45_01165 IPR028082 Periplasmic binding protein-like I RY45_01170 IPR011032 GroES (chaperonin 10)-like RY45_01170 IPR013149 Alcohol dehydrogenase, C-terminal RY45_01170 IPR013154 Alcohol dehydrogenase GroES-like RY45_01170 IPR014188 Acrylyl-CoA reductase AcuI RY45_01170 IPR020843 Polyketide synthase, enoylreductase RY45_01170 IPR036291 RY45_01170 RY45_01175 IPR021242 Protein of unknown function DUF2799 RY45_01180 IPR005503 Flagellar basal body-associated protein FliL RY45_01185 IPR007440 Chorismate--pyruvate lyase RY45_01185 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RY45_01190 IPR000537 UbiA prenyltransferase family RY45_01190 IPR006370 4-hydroxybenzoate polyprenyl transferase RY45_01190 IPR030470 RY45_01190 RY45_01195 IPR002123 Phospholipid/glycerol acyltransferase RY45_01195 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase RY45_01195 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB RY45_01200 IPR006197 Peptidase S24, LexA-like RY45_01200 IPR006199 LexA repressor, DNA-binding domain RY45_01200 IPR006200 LexA repressor RY45_01200 IPR015927 Peptidase S24/S26A/S26B/S26C RY45_01200 IPR036286 RY45_01200 RY45_01200 IPR036388 RY45_01200 RY45_01200 IPR036390 RY45_01200 RY45_01210 IPR003782 Copper chaperone SCO1/SenC RY45_01210 IPR036249 RY45_01210 RY45_01215 IPR002528 Multi antimicrobial extrusion protein RY45_01220 IPR001537 tRNA/rRNA methyltransferase, SpoU type RY45_01220 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase RY45_01220 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_01220 IPR029028 Alpha/beta knot methyltransferases RY45_01225 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_01225 IPR003660 HAMP linker domain RY45_01225 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_01225 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_01225 IPR036097 RY45_01225 RY45_01225 IPR036890 RY45_01225 RY45_01230 IPR001789 Signal transduction response regulator, receiver domain RY45_01230 IPR001867 Signal transduction response regulator, C-terminal RY45_01230 IPR011006 CheY-like superfamily RY45_01230 IPR016032 Signal transduction response regulator, C-terminal effector RY45_01230 IPR036388 RY45_01230 RY45_01235 IPR002524 Cation efflux protein RY45_01235 IPR027469 Cation efflux protein transmembrane domain RY45_01235 IPR027470 Cation efflux protein cytoplasmic domain RY45_01235 IPR036837 RY45_01235 RY45_01240 IPR001451 Bacterial transferase hexapeptide repeat RY45_01240 IPR005881 Serine O-acetyltransferase RY45_01240 IPR010493 Serine acetyltransferase, N-terminal RY45_01240 IPR011004 Trimeric LpxA-like RY45_01240 IPR018357 Hexapeptide transferase, conserved site RY45_01250 IPR009252 Cell division protein ZapB RY45_01255 IPR002818 ThiJ/PfpI RY45_01255 IPR026041 Enhancing lycopene biosynthesis protein 2 RY45_01255 IPR029062 Class I glutamine amidotransferase-like RY45_01260 IPR001098 DNA-directed DNA polymerase, family A, palm domain RY45_01260 IPR002298 DNA polymerase A RY45_01260 IPR002421 5'-3' exonuclease, N-terminal RY45_01260 IPR002562 3'-5' exonuclease domain RY45_01260 IPR008918 Helix-hairpin-helix motif, class 2 RY45_01260 IPR012337 Ribonuclease H-like domain RY45_01260 IPR018320 DNA polymerase 1 RY45_01260 IPR019760 DNA-directed DNA polymerase, family A, conserved site RY45_01260 IPR020045 5'-3' exonuclease, C-terminal domain RY45_01260 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal RY45_01260 IPR029060 PIN domain-like RY45_01260 IPR036279 RY45_01260 RY45_01260 IPR036397 RY45_01260 RY45_01265 IPR001451 Bacterial transferase hexapeptide repeat RY45_01265 IPR011004 Trimeric LpxA-like RY45_01305 IPR000843 Transcription regulator HTH, LacI RY45_01305 IPR010982 Lambda repressor-like, DNA-binding domain RY45_01305 IPR028082 Periplasmic binding protein-like I RY45_01310 IPR004199 Beta galactosidase small chain/ domain 5 RY45_01310 IPR006101 Glycoside hydrolase, family 2 RY45_01310 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich RY45_01310 IPR006103 Glycoside hydrolase, family 2, TIM barrel RY45_01310 IPR006104 Glycosyl hydrolases family 2, sugar binding domain RY45_01310 IPR008979 Galactose-binding domain-like RY45_01310 IPR011013 Galactose mutarotase-like domain RY45_01310 IPR013783 Immunoglobulin-like fold RY45_01310 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup RY45_01310 IPR017853 Glycoside hydrolase, superfamily RY45_01310 IPR023230 Glycoside hydrolase, family 2, conserved site RY45_01310 IPR023232 Glycoside hydrolase, family 2, active site RY45_01310 IPR032312 RY45_01310 RY45_01310 IPR036156 RY45_01310 RY45_01315 IPR004375 Conserved hypothetical protein CHP00022 RY45_01315 IPR037012 RY45_01315 RY45_01320 IPR002293 Amino acid/polyamine transporter I RY45_01325 IPR002547 tRNA-binding domain RY45_01325 IPR012340 Nucleic acid-binding, OB-fold RY45_01330 IPR002293 Amino acid/polyamine transporter I RY45_01335 IPR016833 Putative sodium bile acid cotransporter RY45_01335 IPR038770 RY45_01335 RY45_01340 IPR005532 Formylglycine-generating sulphatase enzyme domain RY45_01340 IPR013216 Methyltransferase type 11 RY45_01340 IPR016187 C-type lectin fold RY45_01340 IPR024775 DinB-like domain RY45_01340 IPR027577 5-histidylcysteine sulfoxide synthase RY45_01340 IPR027625 Putative 4-mercaptohistidine N1-methyltranferase, OvoA C-terminal domain RY45_01340 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_01345 IPR021255 Protein of unknown function DUF2807 RY45_01350 IPR000801 Putative esterase RY45_01350 IPR014186 S-formylglutathione hydrolase RY45_01350 IPR029058 Alpha/Beta hydrolase fold RY45_01355 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site RY45_01355 IPR011032 GroES (chaperonin 10)-like RY45_01355 IPR013149 Alcohol dehydrogenase, C-terminal RY45_01355 IPR013154 Alcohol dehydrogenase GroES-like RY45_01355 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase RY45_01355 IPR020843 Polyketide synthase, enoylreductase RY45_01355 IPR036291 RY45_01355 RY45_01360 IPR000847 Transcription regulator HTH, LysR RY45_01360 IPR005119 LysR, substrate-binding RY45_01360 IPR036388 RY45_01360 RY45_01360 IPR036390 RY45_01360 RY45_01365 IPR001851 ABC transporter, permease RY45_01370 IPR001851 ABC transporter, permease RY45_01375 IPR003439 ABC transporter-like RY45_01375 IPR003593 AAA+ ATPase domain RY45_01375 IPR017871 ABC transporter, conserved site RY45_01375 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01380 IPR003760 Basic membrane lipoprotein RY45_01380 IPR028082 Periplasmic binding protein-like I RY45_01385 IPR005753 DNA helicase, ATP-dependent, UvrD type RY45_01385 IPR013986 DExx box DNA helicase domain RY45_01385 IPR014017 DNA helicase, UvrD-like, C-terminal RY45_01385 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01385 IPR034739 RY45_01385 RY45_01405 IPR000847 Transcription regulator HTH, LysR RY45_01405 IPR005119 LysR, substrate-binding RY45_01405 IPR036388 RY45_01405 RY45_01405 IPR036390 RY45_01405 RY45_01415 IPR001452 SH3 domain RY45_01415 IPR014593 Uncharacterised conserved protein UCP034961, SH3-2 RY45_01415 IPR036028 RY45_01415 RY45_01425 IPR017704 Putative selenium-binding protein YdfZ RY45_01430 IPR018531 Domain of unknown function DUF1993 RY45_01430 IPR034660 RY45_01430 RY45_01435 IPR013538 Activator of Hsp90 ATPase homologue 1-like RY45_01435 IPR023393 START-like domain RY45_01440 IPR011051 RmlC-like cupin domain RY45_01440 IPR013096 Cupin 2, conserved barrel RY45_01440 IPR014710 RmlC-like jelly roll fold RY45_01445 IPR021747 Protein of unknown function DUF3313 RY45_01450 IPR010404 Chromophore lyase CpcT/CpeT RY45_01450 IPR038672 RY45_01450 RY45_01455 IPR000847 Transcription regulator HTH, LysR RY45_01455 IPR005119 LysR, substrate-binding RY45_01455 IPR036388 RY45_01455 RY45_01455 IPR036390 RY45_01455 RY45_01460 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_01465 IPR022605 Protein of unknown function DUF2920 RY45_01465 IPR029058 Alpha/Beta hydrolase fold RY45_01470 IPR007272 Sulphur transport domain RY45_01475 IPR001757 Cation-transporting P-type ATPase RY45_01475 IPR004014 Cation-transporting P-type ATPase, N-terminal RY45_01475 IPR006068 Cation-transporting P-type ATPase, C-terminal RY45_01475 IPR006415 Magnesium-transporting P-type ATPase, subfamily IIIB RY45_01475 IPR008250 P-type ATPase, A domain RY45_01475 IPR018303 P-type ATPase, phosphorylation site RY45_01475 IPR023214 HAD-like domain RY45_01475 IPR023298 P-type ATPase, transmembrane domain RY45_01475 IPR023299 P-type ATPase, cytoplasmic domain N RY45_01475 IPR036412 RY45_01475 RY45_01480 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_01485 IPR003313 AraC-type arabinose-binding/dimerisation domain RY45_01485 IPR009057 Homeodomain-like RY45_01485 IPR018060 DNA binding HTH domain, AraC-type RY45_01485 IPR018062 HTH domain AraC-type, conserved site RY45_01485 IPR020449 Transcription regulator HTH, AraC- type RY45_01485 IPR037923 RY45_01485 RY45_01490 IPR000620 Drug/metabolite transporter RY45_01490 IPR004626 RarD protein RY45_01495 IPR015590 Aldehyde dehydrogenase domain RY45_01495 IPR016160 Aldehyde dehydrogenase, cysteine active site RY45_01495 IPR016161 Aldehyde/histidinol dehydrogenase RY45_01495 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_01495 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_01495 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RY45_01500 IPR001387 Cro/C1-type helix-turn-helix domain RY45_01500 IPR010982 Lambda repressor-like, DNA-binding domain RY45_01500 IPR011051 RmlC-like cupin domain RY45_01500 IPR013096 Cupin 2, conserved barrel RY45_01500 IPR014710 RmlC-like jelly roll fold RY45_01505 IPR005814 Aminotransferase class-III RY45_01505 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_01505 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_01505 IPR015424 Pyridoxal phosphate-dependent transferase RY45_01510 IPR010061 Methylmalonate-semialdehyde dehydrogenase RY45_01510 IPR015590 Aldehyde dehydrogenase domain RY45_01510 IPR016160 Aldehyde dehydrogenase, cysteine active site RY45_01510 IPR016161 Aldehyde/histidinol dehydrogenase RY45_01510 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_01510 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_01515 IPR017926 Glutamine amidotransferase RY45_01515 IPR029062 Class I glutamine amidotransferase-like RY45_01520 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RY45_01520 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RY45_01520 IPR008141 Alanine dehydrogenase RY45_01520 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 RY45_01520 IPR036291 RY45_01520 RY45_01525 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site RY45_01525 IPR011611 Carbohydrate kinase PfkB RY45_01525 IPR029056 Ribokinase-like RY45_01530 IPR000944 Transcription regulator Rrf2-like RY45_01530 IPR030489 RY45_01530 RY45_01530 IPR036388 RY45_01530 RY45_01530 IPR036390 RY45_01530 RY45_01535 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_01535 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_01550 IPR003445 Cation transporter RY45_01550 IPR004772 Potassium uptake protein TrkH family RY45_01555 IPR003148 Regulator of K+ conductance, N-terminal RY45_01555 IPR006036 Potassium uptake protein TrkA RY45_01555 IPR006037 Regulator of K+ conductance, C-terminal RY45_01555 IPR036291 RY45_01555 RY45_01555 IPR036721 RY45_01555 RY45_01560 IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p RY45_01560 IPR004573 rRNA small subunit methyltransferase B RY45_01560 IPR006027 NusB/RsmB/TIM44 RY45_01560 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site RY45_01560 IPR023267 RNA (C5-cytosine) methyltransferase RY45_01560 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_01560 IPR035926 RY45_01560 RY45_01565 IPR001555 Phosphoribosylglycinamide formyltransferase, active site RY45_01565 IPR002376 Formyl transferase, N-terminal RY45_01565 IPR005793 Formyl transferase, C-terminal RY45_01565 IPR005794 Methionyl-tRNA formyltransferase RY45_01565 IPR011034 Formyl transferase, C-terminal-like RY45_01565 IPR036477 RY45_01565 RY45_01565 IPR037022 RY45_01565 RY45_01570 IPR023635 Peptide deformylase RY45_01570 IPR036821 RY45_01570 RY45_01575 IPR018392 LysM domain RY45_01575 IPR036779 RY45_01575 RY45_01580 IPR003488 DNA recombination-mediator protein A RY45_01580 IPR010994 RuvA domain 2-like RY45_01585 IPR007456 Protein of unknown function DUF494 RY45_01590 IPR013498 DNA topoisomerase, type IA, zn finger RY45_01595 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain RY45_01595 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE RY45_01595 IPR033747 RY45_01595 RY45_01595 IPR035893 RY45_01595 RY45_01600 IPR006070 YrdC-like domain RY45_01600 IPR017945 DHBP synthase RibB-like alpha/beta domain RY45_01600 IPR023535 Threonylcarbamoyl-AMP synthase RY45_01605 IPR001260 Coproporphyrinogen III oxidase, aerobic RY45_01605 IPR018375 Coproporphyrinogen III oxidase, conserved site RY45_01605 IPR036406 RY45_01605 RY45_01610 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RY45_01610 IPR011342 Shikimate dehydrogenase RY45_01610 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal RY45_01610 IPR022893 Shikimate, quinate/shikimate dehydrogenase RY45_01610 IPR036291 RY45_01610 RY45_01615 IPR009962 Protein of unknown function DUF1488 RY45_01615 IPR036692 RY45_01615 RY45_01620 IPR006073 GTP binding domain RY45_01620 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC RY45_01620 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01625 IPR009056 Cytochrome c-like domain RY45_01625 IPR024167 Cytochrome c4 RY45_01625 IPR036909 RY45_01625 RY45_01635 IPR007336 Der GTPase activator RY45_01640 IPR019617 Domain of unknown function DUF2489 RY45_01645 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN RY45_01645 IPR006638 Elongator protein 3/MiaB/NifB RY45_01645 IPR007197 Radical SAM RY45_01645 IPR010723 HemN, C-terminal domain RY45_01645 IPR023404 Radical SAM, alpha/beta horseshoe RY45_01650 IPR001365 Adenosine/AMP deaminase domain RY45_01650 IPR006330 Adenosine/adenine deaminase RY45_01650 IPR028893 Adenosine deaminase RY45_01650 IPR032466 RY45_01650 RY45_01655 IPR001789 Signal transduction response regulator, receiver domain RY45_01655 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_01655 IPR002197 DNA binding HTH domain, Fis-type RY45_01655 IPR003593 AAA+ ATPase domain RY45_01655 IPR009057 Homeodomain-like RY45_01655 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) RY45_01655 IPR011006 CheY-like superfamily RY45_01655 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_01655 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_01655 IPR025944 Sigma-54 interaction domain, conserved site RY45_01655 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01660 IPR000014 PAS domain RY45_01660 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_01660 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_01660 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_01660 IPR013767 PAS fold RY45_01660 IPR035965 RY45_01660 RY45_01660 IPR036097 RY45_01660 RY45_01660 IPR036890 RY45_01660 RY45_01665 IPR025392 Domain of unknown function DUF4124 RY45_01670 IPR001637 Glutamine synthetase class-I, adenylation site RY45_01670 IPR004809 Glutamine synthetase type I RY45_01670 IPR008146 Glutamine synthetase, catalytic domain RY45_01670 IPR008147 Glutamine synthetase, beta-Grasp RY45_01670 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain RY45_01670 IPR027302 Glutamine synthetase, N-terminal conserved site RY45_01670 IPR027303 Glutamine synthetase, glycine-rich site RY45_01670 IPR036651 RY45_01670 RY45_01675 IPR000640 Translation elongation factor EFG, V domain RY45_01675 IPR000795 Elongation factor, GTP-binding domain RY45_01675 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 RY45_01675 IPR005225 Small GTP-binding protein domain RY45_01675 IPR006298 GTP-binding protein TypA RY45_01675 IPR009000 Translation protein, beta-barrel domain RY45_01675 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01675 IPR031157 RY45_01675 RY45_01675 IPR035647 RY45_01675 RY45_01680 IPR017039 Virulence factor BrkB RY45_01680 IPR023679 Uncharacterised protein family UPF0761, bacterial RY45_01690 IPR003732 D-tyrosyl-tRNA(Tyr) deacylase RY45_01690 IPR023509 D-Tyr tRNAtyr deacylase-like domain RY45_01695 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_01705 IPR000182 GNAT domain RY45_01705 IPR012660 Thioesterase, putative RY45_01705 IPR016181 Acyl-CoA N-acyltransferase RY45_01705 IPR029069 HotDog domain RY45_01710 IPR032712 RY45_01710 RY45_01715 IPR001650 Helicase, C-terminal RY45_01715 IPR004609 ATP-dependent DNA helicase RecG RY45_01715 IPR011545 DEAD/DEAH box helicase domain RY45_01715 IPR012340 Nucleic acid-binding, OB-fold RY45_01715 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_01715 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01715 IPR033454 RY45_01715 RY45_01720 IPR001736 Phospholipase D/Transphosphatidylase RY45_01720 IPR025202 Phospholipase D-like domain RY45_01725 IPR003474 Gluconate transporter RY45_01730 IPR006001 Carbohydrate kinase, thermoresistant glucokinase RY45_01730 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01730 IPR031322 RY45_01730 RY45_01735 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase RY45_01735 IPR004786 6-phosphogluconate dehydratase RY45_01735 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site RY45_01735 IPR037237 RY45_01735 RY45_01740 IPR000887 KDPG/KHG aldolase RY45_01740 IPR013785 Aldolase-type TIM barrel RY45_01740 IPR031337 RY45_01740 RY45_01740 IPR031338 RY45_01740 RY45_01745 IPR000843 Transcription regulator HTH, LacI RY45_01745 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_01745 IPR010982 Lambda repressor-like, DNA-binding domain RY45_01745 IPR028082 Periplasmic binding protein-like I RY45_01750 IPR001646 Pentapeptide repeat RY45_01755 IPR011055 Duplicated hybrid motif RY45_01755 IPR016047 Peptidase M23 RY45_01760 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent RY45_01760 IPR006124 Metalloenzyme RY45_01760 IPR011258 BPG-independent PGAM, N-terminal RY45_01760 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_01760 IPR017850 Alkaline-phosphatase-like, core domain RY45_01760 IPR036646 RY45_01760 RY45_01765 IPR001763 Rhodanese-like domain RY45_01765 IPR036873 RY45_01765 RY45_01770 IPR003708 Bacterial protein export chaperone SecB RY45_01770 IPR035958 RY45_01770 RY45_01775 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal RY45_01775 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent RY45_01775 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_01775 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal RY45_01775 IPR013328 Dehydrogenase, multihelical RY45_01775 IPR036291 RY45_01775 RY45_01780 IPR000361 FeS cluster biogenesis RY45_01780 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal RY45_01780 IPR017726 Fe/S biogenesis protein NfuA RY45_01780 IPR034904 RY45_01780 RY45_01780 IPR035903 RY45_01780 RY45_01785 IPR029057 Phosphoribosyltransferase-like RY45_01790 IPR000073 Alpha/beta hydrolase fold-1 RY45_01790 IPR010076 Pimelyl-[acyl-carrier protein] methyl ester esterase RY45_01790 IPR029058 Alpha/Beta hydrolase fold RY45_01800 IPR021973 SprA-related family RY45_01810 IPR003029 Ribosomal protein S1, RNA-binding domain RY45_01810 IPR006641 YqgF/RNase H-like domain RY45_01810 IPR010994 RuvA domain 2-like RY45_01810 IPR012337 Ribonuclease H-like domain RY45_01810 IPR012340 Nucleic acid-binding, OB-fold RY45_01810 IPR018974 Tex-like protein, N-terminal RY45_01810 IPR022967 RNA-binding domain, S1 RY45_01810 IPR023319 Tex-like protein, HTH domain RY45_01810 IPR023323 Tex-like domain RY45_01810 IPR032639 RY45_01810 RY45_01810 IPR037027 RY45_01810 RY45_01815 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal RY45_01815 IPR006358 Transcription elongation factor GreB RY45_01815 IPR018151 Transcription elongation factor, GreA/GreB, conserved site RY45_01815 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal RY45_01815 IPR023459 Transcription elongation factor GreA/GreB family RY45_01815 IPR028624 Transcription elongation factor GreA/GreB RY45_01815 IPR036805 RY45_01815 RY45_01815 IPR036953 RY45_01815 RY45_01820 IPR001789 Signal transduction response regulator, receiver domain RY45_01820 IPR001867 Signal transduction response regulator, C-terminal RY45_01820 IPR011006 CheY-like superfamily RY45_01820 IPR016032 Signal transduction response regulator, C-terminal effector RY45_01820 IPR036388 RY45_01820 RY45_01825 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_01825 IPR003660 HAMP linker domain RY45_01825 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_01825 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_01825 IPR036097 RY45_01825 RY45_01825 IPR036890 RY45_01825 RY45_01830 IPR000620 Drug/metabolite transporter RY45_01835 IPR001848 Ribosomal protein S10 RY45_01835 IPR018268 Ribosomal protein S10, conserved site RY45_01835 IPR027486 Ribosomal protein S10 domain RY45_01835 IPR036838 RY45_01835 RY45_01840 IPR000597 Ribosomal protein L3 RY45_01840 IPR009000 Translation protein, beta-barrel domain RY45_01840 IPR019926 Ribosomal protein L3, conserved site RY45_01840 IPR019927 Ribosomal protein L3, bacterial/organelle-type RY45_01845 IPR002136 Ribosomal protein L4/L1e RY45_01845 IPR013005 Ribosomal protein L4/L1e, bacterial-type RY45_01845 IPR023574 Ribosomal protein L4 domain RY45_01850 IPR001014 Ribosomal protein L23/L25, conserved site RY45_01850 IPR012677 Nucleotide-binding, alpha-beta plait RY45_01850 IPR012678 Ribosomal protein L23/L15e core domain RY45_01850 IPR013025 Ribosomal protein L25/L23 RY45_01855 IPR002171 Ribosomal protein L2 RY45_01855 IPR005880 Ribosomal protein L2, bacterial/organellar-type RY45_01855 IPR008991 Translation protein SH3-like domain RY45_01855 IPR012340 Nucleic acid-binding, OB-fold RY45_01855 IPR014722 Ribosomal protein L2 domain 2 RY45_01855 IPR014726 Ribosomal protein L2, domain 3 RY45_01855 IPR022666 Ribosomal Proteins L2, RNA binding domain RY45_01855 IPR022669 Ribosomal protein L2, C-terminal RY45_01860 IPR002222 Ribosomal protein S19/S15 RY45_01860 IPR005732 Ribosomal protein S19, bacterial-type RY45_01860 IPR020934 Ribosomal protein S19 conserved site RY45_01860 IPR023575 Ribosomal protein S19, superfamily RY45_01865 IPR001063 Ribosomal protein L22/L17 RY45_01865 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type RY45_01865 IPR018260 Ribosomal protein L22/L17, conserved site RY45_01865 IPR036394 RY45_01865 RY45_01870 IPR001351 Ribosomal protein S3, C-terminal RY45_01870 IPR004044 K Homology domain, type 2 RY45_01870 IPR004087 K Homology domain RY45_01870 IPR005704 Ribosomal protein S3, bacterial RY45_01870 IPR009019 K homology domain, prokaryotic type RY45_01870 IPR015946 K homology domain-like, alpha/beta RY45_01870 IPR018280 Ribosomal protein S3, conserved site RY45_01870 IPR036419 RY45_01870 RY45_01875 IPR000114 Ribosomal protein L16 RY45_01875 IPR016180 Ribosomal protein L10e/L16 RY45_01875 IPR020798 Ribosomal protein L16, conserved site RY45_01875 IPR036920 RY45_01875 RY45_01880 IPR001854 Ribosomal protein L29 RY45_01880 IPR018254 Ribosomal protein L29, conserved site RY45_01880 IPR036049 RY45_01880 RY45_01885 IPR000266 Ribosomal protein S17 RY45_01885 IPR012340 Nucleic acid-binding, OB-fold RY45_01885 IPR019979 Ribosomal protein S17, conserved site RY45_01885 IPR019984 Ribosomal protein S17, bacterial-type RY45_01890 IPR000218 Ribosomal protein L14b/L23e RY45_01890 IPR005745 Ribosomal protein L14, bacterial-type RY45_01890 IPR019972 Ribosomal protein L14 conserved site RY45_01890 IPR036853 RY45_01890 RY45_01895 IPR003256 Ribosomal protein L24 RY45_01895 IPR005825 Ribosomal protein L24/L26, conserved site RY45_01895 IPR008991 Translation protein SH3-like domain RY45_01895 IPR014722 Ribosomal protein L2 domain 2 RY45_01900 IPR002132 Ribosomal protein L5 RY45_01900 IPR020929 Ribosomal protein L5, conserved site RY45_01900 IPR020930 Ribosomal protein L5, bacterial-type RY45_01900 IPR022803 Ribosomal protein L5 domain RY45_01900 IPR031309 RY45_01900 RY45_01900 IPR031310 RY45_01900 RY45_01905 IPR001209 Ribosomal protein S14 RY45_01905 IPR018271 Ribosomal protein S14, conserved site RY45_01905 IPR023036 Ribosomal protein S14, bacterial/plastid RY45_01910 IPR000630 Ribosomal protein S8 RY45_01910 IPR035987 RY45_01910 RY45_01915 IPR000702 Ribosomal protein L6 RY45_01915 IPR002358 Ribosomal protein L6, conserved site RY45_01915 IPR019906 Ribosomal protein L6, bacterial-type RY45_01915 IPR020040 Ribosomal protein L6, alpha-beta domain RY45_01915 IPR036789 RY45_01915 RY45_01920 IPR004389 Ribosomal protein L18, bacterial-type RY45_01920 IPR005484 Ribosomal protein L18/L5 RY45_01925 IPR005324 Ribosomal protein S5, C-terminal RY45_01925 IPR005712 Ribosomal protein S5, bacterial-type RY45_01925 IPR013810 Ribosomal protein S5, N-terminal RY45_01925 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_01925 IPR018192 Ribosomal protein S5, N-terminal, conserved site RY45_01925 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_01930 IPR001196 Ribosomal protein L15, conserved site RY45_01930 IPR005749 Ribosomal protein L15, bacterial-type RY45_01930 IPR021131 Ribosomal protein L18e/L15P RY45_01930 IPR030878 RY45_01930 RY45_01930 IPR036227 RY45_01930 RY45_01935 IPR002208 SecY/SEC61-alpha family RY45_01935 IPR023201 SecY subunit domain RY45_01935 IPR026593 Protein translocase subunit SecY RY45_01935 IPR030659 RY45_01935 RY45_01940 IPR001892 Ribosomal protein S13 RY45_01940 IPR010979 Ribosomal protein S13-like, H2TH RY45_01940 IPR018269 Ribosomal protein S13, conserved site RY45_01940 IPR019980 Ribosomal protein S13, bacterial-type RY45_01940 IPR027437 30s ribosomal protein S13, C-terminal RY45_01945 IPR001971 Ribosomal protein S11 RY45_01945 IPR018102 Ribosomal S11, conserved site RY45_01945 IPR019981 Ribosomal protein S11, bacterial-type RY45_01945 IPR036967 RY45_01945 RY45_01950 IPR001912 Ribosomal protein S4/S9, N-terminal RY45_01950 IPR002942 RNA-binding S4 domain RY45_01950 IPR005709 Ribosomal protein S4, bacterial-type RY45_01950 IPR018079 Ribosomal protein S4, conserved site RY45_01950 IPR036986 RY45_01950 RY45_01955 IPR011260 RNA polymerase, alpha subunit, C-terminal RY45_01955 IPR011262 DNA-directed RNA polymerase, insert domain RY45_01955 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type RY45_01955 IPR011773 DNA-directed RNA polymerase, alpha subunit RY45_01955 IPR036603 RY45_01955 RY45_01955 IPR036643 RY45_01955 RY45_01960 IPR000456 Ribosomal protein L17 RY45_01960 IPR036373 RY45_01960 RY45_01995 IPR026881 WYL domain RY45_02000 IPR007360 Invasion gene expression up-regulator, SirB RY45_02005 IPR003148 Regulator of K+ conductance, N-terminal RY45_02005 IPR004771 K+/H+ exchanger RY45_02005 IPR006153 Cation/H+ exchanger RY45_02005 IPR036291 RY45_02005 RY45_02005 IPR038770 RY45_02005 RY45_02010 IPR003680 Flavodoxin-like fold RY45_02010 IPR029039 Flavoprotein-like RY45_02015 IPR000847 Transcription regulator HTH, LysR RY45_02015 IPR005119 LysR, substrate-binding RY45_02015 IPR036388 RY45_02015 RY45_02015 IPR036390 RY45_02015 RY45_02020 IPR002347 Glucose/ribitol dehydrogenase RY45_02020 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_02020 IPR036291 RY45_02020 RY45_02030 IPR007332 Protein of unknown function DUF411 RY45_02030 IPR036249 RY45_02030 RY45_02035 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RY45_02035 IPR002470 Peptidase S9A, prolyl oligopeptidase RY45_02035 IPR023302 Peptidase S9A, N-terminal domain RY45_02035 IPR029058 Alpha/Beta hydrolase fold RY45_02040 IPR011852 TRAP transporter solute receptor, TAXI family RY45_02045 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RY45_02045 IPR011853 TRAP transporter, 4TM/12TM fusion protein RY45_02045 IPR021814 Protein of unknown function DUF3394 RY45_02050 IPR012506 YhhN-like RY45_02055 IPR004638 Drug resistance transporter EmrB/QacA subfamily RY45_02055 IPR011701 Major facilitator superfamily RY45_02055 IPR036259 RY45_02055 RY45_02060 IPR006143 RND efflux pump, membrane fusion protein RY45_02060 IPR032317 RY45_02060 RY45_02060 IPR039562 RY45_02060 RY45_02065 IPR000847 Transcription regulator HTH, LysR RY45_02065 IPR005119 LysR, substrate-binding RY45_02065 IPR036388 RY45_02065 RY45_02065 IPR036390 RY45_02065 RY45_02070 IPR018551 Domain of unknown function DUF2007 RY45_02075 IPR001991 Sodium:dicarboxylate symporter RY45_02075 IPR018107 Sodium:dicarboxylate symporter, conserved site RY45_02075 IPR036458 RY45_02075 RY45_02080 IPR019620 Putative metal-binding protein RY45_02085 IPR002771 Multiple antibiotic resistance (MarC)-related RY45_02090 IPR000847 Transcription regulator HTH, LysR RY45_02090 IPR005119 LysR, substrate-binding RY45_02090 IPR036388 RY45_02090 RY45_02090 IPR036390 RY45_02090 RY45_02095 IPR003369 Sec-independent protein translocase protein TatA/B/E RY45_02095 IPR006312 Sec-independent protein translocase protein TatA/E RY45_02100 IPR005272 Conserved hypothetical protein CHP00743 RY45_02100 IPR035571 RY45_02100 RY45_02105 IPR000189 Prokaryotic transglycosylase, active site RY45_02105 IPR001638 Extracellular solute-binding protein, family 3 RY45_02105 IPR008258 Lytic transglycosylase-like SLT domain RY45_02105 IPR023346 Lysozyme-like domain RY45_02110 IPR001736 Phospholipase D/Transphosphatidylase RY45_02110 IPR025202 Phospholipase D-like domain RY45_02115 IPR005804 Fatty acid desaturase, type 1 RY45_02115 IPR009160 Delta-9 acyl-CoA desaturase, haem/steroid binding domain-containing RY45_02115 IPR015876 Fatty acid desaturase, type 1, core RY45_02120 IPR001647 DNA-binding HTH domain, TetR-type RY45_02120 IPR009057 Homeodomain-like RY45_02120 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_02120 IPR036271 RY45_02120 RY45_02125 IPR009867 Protein of unknown function DUF1422 RY45_02130 IPR009525 Protein of unknown function DUF1145 RY45_02135 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_02135 IPR004398 RNA methyltransferase, RsmD RY45_02135 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_02140 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain RY45_02140 IPR003593 AAA+ ATPase domain RY45_02140 IPR004390 Signal-recognition particle receptor FtsY RY45_02140 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle RY45_02140 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02140 IPR036225 RY45_02140 RY45_02145 IPR003439 ABC transporter-like RY45_02145 IPR003593 AAA+ ATPase domain RY45_02145 IPR005286 Cell division protein FtsE, ATP-binding RY45_02145 IPR017871 ABC transporter, conserved site RY45_02145 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02150 IPR004513 ABC transporter, cell division protein FtsX RY45_02155 IPR000943 RNA polymerase sigma-70 RY45_02155 IPR007627 RNA polymerase sigma-70 region 2 RY45_02155 IPR007630 RNA polymerase sigma-70 region 4 RY45_02155 IPR009042 RNA polymerase sigma-70 region 1.2 RY45_02155 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria RY45_02155 IPR013324 RNA polymerase sigma factor, region 3/4 RY45_02155 IPR013325 RNA polymerase sigma factor, region 2 RY45_02155 IPR014284 RNA polymerase sigma-70 like domain RY45_02155 IPR036388 RY45_02155 RY45_02160 IPR001765 Carbonic anhydrase RY45_02160 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site RY45_02160 IPR036874 RY45_02160 RY45_02165 IPR000524 Transcription regulator HTH, GntR RY45_02165 IPR010248 Histidine utilization repressor RY45_02165 IPR011663 UbiC transcription regulator-associated RY45_02165 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RY45_02165 IPR036388 RY45_02165 RY45_02165 IPR036390 RY45_02165 RY45_02170 IPR005920 Imidazolonepropionase RY45_02170 IPR006680 Amidohydrolase 1 RY45_02170 IPR011059 Metal-dependent hydrolase, composite domain RY45_02170 IPR032466 RY45_02170 RY45_02175 IPR005923 Formiminoglutamase RY45_02175 IPR006035 Ureohydrolase RY45_02175 IPR020855 Ureohydrolase, manganese-binding site RY45_02175 IPR023696 Ureohydrolase domain RY45_02180 IPR023636 Urocanase conserved site RY45_02180 IPR023637 Urocanase RY45_02180 IPR035085 RY45_02180 RY45_02180 IPR035400 RY45_02180 RY45_02180 IPR035401 RY45_02180 RY45_02180 IPR036190 RY45_02180 RY45_02180 IPR038364 RY45_02180 RY45_02185 IPR001106 Aromatic amino acid lyase RY45_02185 IPR005921 Histidine ammonia-lyase RY45_02185 IPR008948 L-Aspartase-like RY45_02185 IPR022313 Phenylalanine/histidine ammonia-lyases, active site RY45_02185 IPR024083 Fumarase/histidase, N-terminal RY45_02190 IPR004837 Sodium/calcium exchanger membrane region RY45_02195 IPR001633 EAL domain RY45_02195 IPR035919 RY45_02195 RY45_02200 IPR000160 GGDEF domain RY45_02200 IPR001633 EAL domain RY45_02200 IPR029787 Nucleotide cyclase RY45_02200 IPR033423 RY45_02200 RY45_02200 IPR035919 RY45_02200 RY45_02205 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_02205 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase RY45_02205 IPR036052 RY45_02205 RY45_02230 IPR001775 GspD/PilQ family RY45_02230 IPR004846 Type II/III secretion system RY45_02230 IPR011514 Secretin, N-terminal RY45_02230 IPR011662 Secretin/TonB, short N-terminal RY45_02230 IPR013358 Pilus biogenesis, MshL RY45_02235 IPR003593 AAA+ ATPase domain RY45_02235 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02240 IPR011990 Tetratricopeptide-like helical domain RY45_02245 IPR001482 Type II secretion system protein E RY45_02245 IPR003593 AAA+ ATPase domain RY45_02245 IPR007831 General secretory system II, protein E, N-terminal RY45_02245 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02245 IPR037257 RY45_02245 RY45_02250 IPR003004 GspF/PilC family RY45_02250 IPR018076 Type II secretion system F domain RY45_02260 IPR012902 Prokaryotic N-terminal methylation site RY45_02265 IPR012902 Prokaryotic N-terminal methylation site RY45_02270 IPR012902 Prokaryotic N-terminal methylation site RY45_02275 IPR012902 Prokaryotic N-terminal methylation site RY45_02280 IPR012902 Prokaryotic N-terminal methylation site RY45_02290 IPR013320 Concanavalin A-like lectin/glucanase, subgroup RY45_02295 IPR004753 Cell shape determining protein MreB/Mrl RY45_02300 IPR007221 Rod shape-determining protein MreC RY45_02305 IPR007227 Cell shape-determining protein MreD RY45_02305 IPR026034 Cell shape-determining protein MreD, proteobacterial type RY45_02310 IPR003697 Maf-like protein RY45_02310 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_02315 IPR003029 Ribosomal protein S1, RNA-binding domain RY45_02315 IPR004659 Ribonuclease E/G RY45_02315 IPR012340 Nucleic acid-binding, OB-fold RY45_02315 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G RY45_02315 IPR022967 RNA-binding domain, S1 RY45_02320 IPR011836 Conserved hypothetical protein CHP02099 RY45_02320 IPR025263 Domain of unknown function DUF3971 RY45_02320 IPR032712 RY45_02320 RY45_02325 IPR011008 Dimeric alpha-beta barrel RY45_02325 IPR013097 Stress responsive alpha-beta barrel RY45_02330 IPR001110 Uncharacterised protein family UPF0012, conserved site RY45_02330 IPR003010 Carbon-nitrogen hydrolase RY45_02330 IPR036526 RY45_02330 RY45_02335 IPR002510 TldD/PmbA RY45_02335 IPR025502 TldD RY45_02335 IPR035068 RY45_02335 RY45_02335 IPR036059 RY45_02335 RY45_02340 IPR000281 Helix-turn-helix protein RpiR RY45_02340 IPR001347 Sugar isomerase (SIS) RY45_02340 IPR009057 Homeodomain-like RY45_02340 IPR036388 RY45_02340 RY45_02345 IPR018635 Uncharacterised protein family UPF0319 RY45_02350 IPR023614 Porin domain RY45_02355 IPR003352 Phosphotransferase system, EIIC RY45_02355 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site RY45_02355 IPR036878 RY45_02355 RY45_02360 IPR001347 Sugar isomerase (SIS) RY45_02360 IPR005486 Glucokinase regulatory protein, conserved site RY45_02360 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ RY45_02365 IPR024445 Transposase, ISXO2-like RY45_02375 IPR002771 Multiple antibiotic resistance (MarC)-related RY45_02380 IPR011701 Major facilitator superfamily RY45_02380 IPR036259 RY45_02380 RY45_02385 IPR002761 DUF71 domain RY45_02385 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_02390 IPR001789 Signal transduction response regulator, receiver domain RY45_02390 IPR003607 HD/PDEase domain RY45_02390 IPR006674 HD domain RY45_02390 IPR011006 CheY-like superfamily RY45_02395 IPR001789 Signal transduction response regulator, receiver domain RY45_02395 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_02395 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_02395 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_02395 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_02395 IPR011006 CheY-like superfamily RY45_02395 IPR036097 RY45_02395 RY45_02395 IPR036641 RY45_02395 RY45_02395 IPR036890 RY45_02395 RY45_02400 IPR001932 Protein phosphatase 2C (PP2C)-like domain RY45_02400 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_02400 IPR036457 RY45_02400 RY45_02400 IPR036890 RY45_02400 RY45_02405 IPR036513 RY45_02405 RY45_02410 IPR000014 PAS domain RY45_02410 IPR001610 PAC motif RY45_02410 IPR002645 STAS domain RY45_02410 IPR013655 PAS fold-3 RY45_02410 IPR035965 RY45_02410 RY45_02410 IPR036513 RY45_02410 RY45_02415 IPR009057 Homeodomain-like RY45_02415 IPR018060 DNA binding HTH domain, AraC-type RY45_02420 IPR032710 RY45_02420 RY45_02425 IPR005519 Acid phosphatase (Class B) RY45_02425 IPR010025 HAD-superfamily phosphatase, subfamily IIIB, AphA RY45_02425 IPR023214 HAD-like domain RY45_02425 IPR036412 RY45_02425 RY45_02430 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RY45_02440 IPR013976 Metal-dependent hydrolase HDOD RY45_02445 IPR000182 GNAT domain RY45_02445 IPR016181 Acyl-CoA N-acyltransferase RY45_02450 IPR006153 Cation/H+ exchanger RY45_02455 IPR000489 Pterin-binding RY45_02455 IPR003726 Homocysteine S-methyltransferase RY45_02455 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RY45_02455 IPR004223 Vitamin B12-dependent methionine synthase, activation domain RY45_02455 IPR006158 Cobalamin (vitamin B12)-binding domain RY45_02455 IPR011005 Dihydropteroate synthase-like RY45_02455 IPR011822 Cobalamin-dependent methionine synthase RY45_02455 IPR036589 RY45_02455 RY45_02455 IPR036594 RY45_02455 RY45_02455 IPR036724 RY45_02455 RY45_02455 IPR037010 RY45_02455 RY45_02465 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX RY45_02465 IPR013651 ATP-grasp fold, RimK-type RY45_02465 IPR013815 ATP-grasp fold, subdomain 1 RY45_02465 IPR023533 Ribosomal S6 modification enzyme RimK RY45_02470 IPR004685 Branched-chain amino acid transport system II carrier protein RY45_02475 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_02475 IPR036097 RY45_02475 RY45_02475 IPR036890 RY45_02475 RY45_02480 IPR001789 Signal transduction response regulator, receiver domain RY45_02480 IPR001867 Signal transduction response regulator, C-terminal RY45_02480 IPR011006 CheY-like superfamily RY45_02480 IPR016032 Signal transduction response regulator, C-terminal effector RY45_02480 IPR036388 RY45_02480 RY45_02500 IPR007140 Protein of unknown function DUF350 RY45_02505 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain RY45_02505 IPR016185 Pre-ATP-grasp domain RY45_02510 IPR002817 Thiamine biosynthesis protein ThiC RY45_02510 IPR025747 ThiC-associated domain RY45_02510 IPR037509 RY45_02510 RY45_02510 IPR038521 RY45_02510 RY45_02515 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase RY45_02515 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase RY45_02515 IPR013785 Aldolase-type TIM barrel RY45_02515 IPR022998 Thiamin phosphate synthase superfamily RY45_02515 IPR029056 Ribokinase-like RY45_02515 IPR034291 RY45_02515 RY45_02515 IPR036206 RY45_02515 RY45_02520 IPR000594 UBA/THIF-type NAD/FAD binding fold RY45_02520 IPR035985 RY45_02520 RY45_02525 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 RY45_02525 IPR010035 ThiS, thiamine-biosynthesis RY45_02525 IPR012675 Beta-grasp domain RY45_02525 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RY45_02530 IPR008867 Thiazole biosynthesis RY45_02530 IPR013785 Aldolase-type TIM barrel RY45_02530 IPR033983 RY45_02530 RY45_02535 IPR007197 Radical SAM RY45_02535 IPR010722 Biotin and thiamin synthesis-associated domain RY45_02535 IPR012726 Thiazole biosynthesis ThiH RY45_02535 IPR013785 Aldolase-type TIM barrel RY45_02545 IPR000182 GNAT domain RY45_02545 IPR016181 Acyl-CoA N-acyltransferase RY45_02550 IPR014094 Penicillin-binding protein activator LpoB RY45_02560 IPR000182 GNAT domain RY45_02560 IPR016181 Acyl-CoA N-acyltransferase RY45_02570 IPR000160 GGDEF domain RY45_02570 IPR013656 PAS fold-4 RY45_02570 IPR029787 Nucleotide cyclase RY45_02570 IPR035965 RY45_02570 RY45_02580 IPR010331 Exopolysaccharide synthesis, ExoD RY45_02585 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel RY45_02585 IPR027385 Outer membrane protein beta-barrel RY45_02590 IPR000182 GNAT domain RY45_02590 IPR016181 Acyl-CoA N-acyltransferase RY45_02595 IPR011008 Dimeric alpha-beta barrel RY45_02595 IPR014910 Mono-oxygenase, YdhR RY45_02600 IPR002577 Helix-turn-helix, HxlR type RY45_02600 IPR036388 RY45_02600 RY45_02600 IPR036390 RY45_02600 RY45_02605 IPR000182 GNAT domain RY45_02605 IPR016181 Acyl-CoA N-acyltransferase RY45_02610 IPR016878 Uncharacterised conserved protein UCP028288 RY45_02610 IPR032710 RY45_02610 RY45_02615 IPR002656 Acyltransferase 3 RY45_02620 IPR005625 PepSY-associated TM helix RY45_02625 IPR000531 TonB-dependent receptor, beta-barrel RY45_02625 IPR010105 TonB-dependent siderophore receptor RY45_02625 IPR010917 TonB-dependent receptor, conserved site RY45_02625 IPR012910 TonB-dependent receptor, plug RY45_02625 IPR036942 RY45_02625 RY45_02625 IPR037066 RY45_02625 RY45_02630 IPR007487 ABC transporter, substrate-binding protein RY45_02635 IPR023614 Porin domain RY45_02640 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase RY45_02645 IPR005358 Putative zinc- or iron-chelating domain containing protein RY45_02650 IPR005254 Heme biosynthesis-associated TPR protein RY45_02650 IPR010817 HemY, N-terminal RY45_02650 IPR011990 Tetratricopeptide-like helical domain RY45_02655 IPR007470 HemX RY45_02660 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase RY45_02660 IPR036108 RY45_02660 RY45_02665 IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase RY45_02665 IPR022417 Porphobilinogen deaminase, N-terminal RY45_02665 IPR022418 Porphobilinogen deaminase, C-terminal RY45_02665 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site RY45_02665 IPR036803 RY45_02665 RY45_02670 IPR000274 Adenylate cyclase, class-I RY45_02670 IPR024685 Adenylate cyclase class-I, N-terminal domain RY45_02670 IPR024686 Adenylate cyclase class-I, conserved site RY45_02675 IPR003140 Phospholipase/carboxylesterase/thioesterase RY45_02675 IPR029058 Alpha/Beta hydrolase fold RY45_02680 IPR002908 Frataxin/CyaY RY45_02680 IPR020895 Frataxin conserved site RY45_02680 IPR036524 RY45_02680 RY45_02685 IPR000183 Ornithine/DAP/Arg decarboxylase RY45_02685 IPR002986 Diaminopimelate decarboxylase, LysA RY45_02685 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RY45_02685 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal RY45_02685 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal RY45_02685 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RY45_02685 IPR029066 PLP-binding barrel RY45_02690 IPR001653 Diaminopimelate epimerase, DapF RY45_02690 IPR018510 Diaminopimelate epimerase, active site RY45_02695 IPR007435 Protein of unknown function DUF484 RY45_02695 IPR029016 GAF domain-like RY45_02700 IPR002104 Integrase, catalytic RY45_02700 IPR004107 Integrase, SAM-like, N-terminal RY45_02700 IPR010998 Integrase, Lambda-type, N-terminal RY45_02700 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_02700 IPR011931 Tyrosine recombinase XerC RY45_02700 IPR013762 Integrase-like, catalytic core RY45_02700 IPR023009 Tyrosine recombinase XerC/XerD RY45_02705 IPR006439 HAD hydrolase, subfamily IA RY45_02705 IPR023214 HAD-like domain RY45_02705 IPR036412 RY45_02705 RY45_02715 IPR000595 Cyclic nucleotide-binding domain RY45_02715 IPR006685 Mechanosensitive ion channel MscS RY45_02715 IPR010920 Like-Sm (LSM) domain RY45_02715 IPR014710 RmlC-like jelly roll fold RY45_02715 IPR018490 Cyclic nucleotide-binding-like RY45_02715 IPR023408 RY45_02715 RY45_02725 IPR011697 Peptidase C26 RY45_02725 IPR029062 Class I glutamine amidotransferase-like RY45_02730 IPR000150 Cof protein RY45_02730 IPR006379 HAD-superfamily hydrolase, subfamily IIB RY45_02730 IPR023214 HAD-like domain RY45_02730 IPR036412 RY45_02730 RY45_02735 IPR005646 Protein of unknown function DUF342 RY45_02735 IPR036145 RY45_02735 RY45_02740 IPR039562 RY45_02740 RY45_02745 IPR003439 ABC transporter-like RY45_02745 IPR003593 AAA+ ATPase domain RY45_02745 IPR017871 ABC transporter, conserved site RY45_02745 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02755 IPR000412 ABC-2 transporter RY45_02760 IPR001453 Molybdopterin binding domain RY45_02760 IPR008135 Competence-induced protein CinA RY45_02760 IPR036425 RY45_02760 RY45_02765 IPR006674 HD domain RY45_02765 IPR021812 Protein of unknown function DUF3391 RY45_02770 IPR005697 Homoserine O-succinyltransferase RY45_02770 IPR029062 Class I glutamine amidotransferase-like RY45_02770 IPR033752 RY45_02770 RY45_02775 IPR016130 Protein-tyrosine phosphatase, active site RY45_02775 IPR022778 CDKN3 domain RY45_02775 IPR029021 Protein-tyrosine phosphatase-like RY45_02780 IPR000485 AsnC-type HTH domain RY45_02780 IPR011008 Dimeric alpha-beta barrel RY45_02780 IPR019887 Transcription regulator AsnC-type, C-terminal RY45_02780 IPR019888 Transcription regulator AsnC-type RY45_02780 IPR036388 RY45_02780 RY45_02780 IPR036390 RY45_02780 RY45_02785 IPR000917 Sulfatase RY45_02785 IPR012160 Membrane sulfatase, HI1246-related RY45_02785 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_02785 IPR017850 Alkaline-phosphatase-like, core domain RY45_02790 IPR018841 Protein of unknown function DUF2442 RY45_02790 IPR036782 RY45_02790 RY45_02795 IPR000531 TonB-dependent receptor, beta-barrel RY45_02795 IPR010100 TonB-dependent copper receptor RY45_02795 IPR012910 TonB-dependent receptor, plug RY45_02795 IPR036942 RY45_02795 RY45_02795 IPR037066 RY45_02795 RY45_02800 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_02800 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_02800 IPR017853 Glycoside hydrolase, superfamily RY45_02805 IPR003416 MgtC/SapB/SrpB transporter RY45_02810 IPR013815 ATP-grasp fold, subdomain 1 RY45_02810 IPR025839 RimK-like ATPgrasp N-terminal domain RY45_02815 IPR000182 GNAT domain RY45_02815 IPR016181 Acyl-CoA N-acyltransferase RY45_02820 IPR022072 Protein of unknown function DUF3624 RY45_02825 IPR002347 Glucose/ribitol dehydrogenase RY45_02825 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_02825 IPR036291 RY45_02825 RY45_02830 IPR005322 Peptidase C69, dipeptidase A RY45_02860 IPR002514 Transposase IS3/IS911family RY45_02860 IPR009057 Homeodomain-like RY45_02865 IPR001584 Integrase, catalytic core RY45_02865 IPR012337 Ribonuclease H-like domain RY45_02865 IPR036397 RY45_02865 RY45_02875 IPR008727 PAAR motif RY45_02875 IPR018712 Domain of unknown function DUF2235 RY45_02895 IPR001387 Cro/C1-type helix-turn-helix domain RY45_02895 IPR010982 Lambda repressor-like, DNA-binding domain RY45_02895 IPR013430 Toxin-antitoxin system, antidote protein, HigA RY45_02900 IPR007711 Plasmid maintenance system killer RY45_02900 IPR035093 RY45_02900 RY45_02905 IPR012337 Ribonuclease H-like domain RY45_02905 IPR032874 RY45_02905 RY45_02910 IPR000182 GNAT domain RY45_02910 IPR016181 Acyl-CoA N-acyltransferase RY45_02915 IPR000489 Pterin-binding RY45_02915 IPR006390 Dihydropteroate synthase RY45_02915 IPR011005 Dihydropteroate synthase-like RY45_02920 IPR000390 Small multidrug resistance protein family RY45_02925 IPR002934 Nucleotidyl transferase domain RY45_02925 IPR024172 Streptomycin 3''-adenylyltransferase RY45_02925 IPR025184 Domain of unknown function DUF4111 RY45_02930 IPR001451 Bacterial transferase hexapeptide repeat RY45_02930 IPR011004 Trimeric LpxA-like RY45_02930 IPR018357 Hexapeptide transferase, conserved site RY45_02940 IPR012337 Ribonuclease H-like domain RY45_02940 IPR032874 RY45_02940 RY45_02950 IPR001647 DNA-binding HTH domain, TetR-type RY45_02950 IPR003012 Tetracycline transcriptional regulator, TetR RY45_02950 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal RY45_02950 IPR009057 Homeodomain-like RY45_02950 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_02950 IPR036271 RY45_02950 RY45_02955 IPR001958 Tetracycline resistance protein, TetA/multidrug resistance protein MdtG RY45_02955 IPR005829 Sugar transporter, conserved site RY45_02955 IPR011701 Major facilitator superfamily RY45_02955 IPR036259 RY45_02955 RY45_02965 IPR001279 Beta-lactamase-like RY45_02965 IPR036866 RY45_02965 RY45_02970 IPR012337 Ribonuclease H-like domain RY45_02970 IPR025668 Transposase DDE domain RY45_02975 IPR001670 Alcohol dehydrogenase, iron-type RY45_02980 IPR004045 Glutathione S-transferase, N-terminal RY45_02980 IPR004046 Glutathione S-transferase, C-terminal RY45_02980 IPR036249 RY45_02980 RY45_02980 IPR036282 RY45_02980 RY45_02985 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme RY45_02985 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase RY45_02985 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_02985 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_02985 IPR015424 Pyridoxal phosphate-dependent transferase RY45_02990 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_02990 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain RY45_02995 IPR029069 HotDog domain RY45_03005 IPR004961 Lipase chaperone RY45_03010 IPR000073 Alpha/beta hydrolase fold-1 RY45_03010 IPR029058 Alpha/Beta hydrolase fold RY45_03015 IPR011990 Tetratricopeptide-like helical domain RY45_03020 IPR001189 Manganese/iron superoxide dismutase RY45_03020 IPR019831 Manganese/iron superoxide dismutase, N-terminal RY45_03020 IPR019832 Manganese/iron superoxide dismutase, C-terminal RY45_03020 IPR019833 Manganese/iron superoxide dismutase, binding site RY45_03020 IPR036314 RY45_03020 RY45_03020 IPR036324 RY45_03020 RY45_03025 IPR003848 Domain of unknown function DUF218 RY45_03030 IPR002169 Peptidase M9A/M9B, collagenase, bacterial RY45_03040 IPR000259 Fimbrial-type adhesion domain RY45_03040 IPR008966 Adhesion domain RY45_03040 IPR036937 RY45_03040 RY45_03050 IPR000015 Outer membrane usher protein RY45_03050 IPR025885 PapC, N-terminal domain RY45_03050 IPR025949 PapC-like, C-terminal domain RY45_03050 IPR037224 RY45_03050 RY45_03055 IPR001829 Pili assembly chaperone, bacterial RY45_03055 IPR008962 PapD-like RY45_03055 IPR013783 Immunoglobulin-like fold RY45_03055 IPR016147 PapD, N-terminal, bacterial RY45_03055 IPR016148 Pili assembly chaperone, C-terminal domain RY45_03055 IPR018046 Pili assembly chaperone, conserved site RY45_03055 IPR036316 RY45_03055 RY45_03060 IPR000259 Fimbrial-type adhesion domain RY45_03060 IPR008966 Adhesion domain RY45_03060 IPR036937 RY45_03060 RY45_03065 IPR000259 Fimbrial-type adhesion domain RY45_03065 IPR008966 Adhesion domain RY45_03065 IPR036937 RY45_03065 RY45_03070 IPR001867 Signal transduction response regulator, C-terminal RY45_03070 IPR016032 Signal transduction response regulator, C-terminal effector RY45_03070 IPR036388 RY45_03070 RY45_03075 IPR000873 AMP-dependent synthetase/ligase RY45_03075 IPR020845 AMP-binding, conserved site RY45_03075 IPR025110 AMP-binding enzyme C-terminal domain RY45_03080 IPR010196 O-succinylbenzoic acid (OSB) synthetase RY45_03080 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RY45_03080 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site RY45_03080 IPR029017 Enolase N-terminal domain-like RY45_03080 IPR029065 Enolase C-terminal domain-like RY45_03080 IPR036849 RY45_03080 RY45_03085 IPR001753 Crotonase superfamily RY45_03085 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase RY45_03085 IPR014748 Crontonase, C-terminal RY45_03085 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RY45_03085 IPR029045 ClpP/crotonase-like domain RY45_03090 IPR000073 Alpha/beta hydrolase fold-1 RY45_03090 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase RY45_03090 IPR029058 Alpha/Beta hydrolase fold RY45_03095 IPR004433 Menaquinone biosynthesis protein MenD RY45_03095 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RY45_03095 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RY45_03095 IPR029035 DHS-like NAD/FAD-binding domain RY45_03095 IPR029061 Thiamin diphosphate-binding fold RY45_03095 IPR032264 RY45_03095 RY45_03100 IPR004561 Isochorismate synthase RY45_03100 IPR005801 ADC synthase RY45_03100 IPR015890 Chorismate binding, C-terminal RY45_03100 IPR034681 RY45_03100 RY45_03105 IPR000537 UbiA prenyltransferase family RY45_03105 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase RY45_03105 IPR026046 UbiA prenyltransferase domain containing protein 1 RY45_03115 IPR005625 PepSY-associated TM helix RY45_03115 IPR025711 PepSY domain RY45_03125 IPR005358 Putative zinc- or iron-chelating domain containing protein RY45_03130 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_03130 IPR001650 Helicase, C-terminal RY45_03130 IPR005580 DbpA, RNA-binding RY45_03130 IPR011545 DEAD/DEAH box helicase domain RY45_03130 IPR012677 Nucleotide-binding, alpha-beta plait RY45_03130 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_03130 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03135 IPR002668 Concentrative nucleoside transporter N-terminal domain RY45_03135 IPR011657 Concentrative nucleoside transporter C-terminal domain RY45_03140 IPR007404 Protein of unknown function DUF457 RY45_03140 IPR016956 LexA regulated metal-dependent membrane hydrolase, predicted RY45_03145 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase RY45_03145 IPR016174 Di-haem cytochrome, transmembrane RY45_03150 IPR025711 PepSY domain RY45_03155 IPR003791 Protein of unknown function UPF0178 RY45_03160 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB RY45_03165 IPR006685 Mechanosensitive ion channel MscS RY45_03165 IPR010920 Like-Sm (LSM) domain RY45_03175 IPR001623 DnaJ domain RY45_03175 IPR021059 DnaJ-related protein, N-terminal RY45_03175 IPR036869 RY45_03175 RY45_03180 IPR003148 Regulator of K+ conductance, N-terminal RY45_03180 IPR006153 Cation/H+ exchanger RY45_03180 IPR036291 RY45_03180 RY45_03180 IPR038770 RY45_03180 RY45_03185 IPR007761 Mannitol repressor RY45_03185 IPR038026 RY45_03185 RY45_03190 IPR000669 Mannitol dehydrogenase RY45_03190 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_03190 IPR013118 Mannitol dehydrogenase, C-terminal RY45_03190 IPR013131 Mannitol dehydrogenase, N-terminal RY45_03190 IPR013328 Dehydrogenase, multihelical RY45_03190 IPR023027 Mannitol dehydrogenase, conserved site RY45_03190 IPR023028 Mannitol-1-phosphate 5-dehydrogenase RY45_03190 IPR036291 RY45_03190 RY45_03195 IPR002178 PTS EIIA type-2 domain RY45_03195 IPR003352 Phosphotransferase system, EIIC RY45_03195 IPR003501 Phosphotransferase system, EIIB component, type 2/3 RY45_03195 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC RY45_03195 IPR016152 Phosphotransferase/anion transporter RY45_03195 IPR036095 RY45_03195 RY45_03200 IPR007349 Domain of unknown function DUF418 RY45_03200 IPR012429 Protein of unknown function DUF1624 RY45_03205 IPR001647 DNA-binding HTH domain, TetR-type RY45_03205 IPR009057 Homeodomain-like RY45_03205 IPR036271 RY45_03205 RY45_03210 IPR001900 RY45_03210 RY45_03210 IPR003029 Ribosomal protein S1, RNA-binding domain RY45_03210 IPR004476 Ribonuclease II/ribonuclease R RY45_03210 IPR011129 Cold shock protein RY45_03210 IPR011804 Ribonuclease II RY45_03210 IPR012340 Nucleic acid-binding, OB-fold RY45_03210 IPR013223 Ribonuclease B, N-terminal OB domain RY45_03210 IPR022966 Ribonuclease II/R, conserved site RY45_03215 IPR000847 Transcription regulator HTH, LysR RY45_03215 IPR005119 LysR, substrate-binding RY45_03215 IPR017685 Transcription regulator ArgP RY45_03215 IPR036388 RY45_03215 RY45_03215 IPR036390 RY45_03215 RY45_03220 IPR001690 Autoinducer synthesis protein RY45_03220 IPR016181 Acyl-CoA N-acyltransferase RY45_03220 IPR018311 Autoinducer synthesis, conserved site RY45_03225 IPR000792 Transcription regulator LuxR, C-terminal RY45_03225 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RY45_03225 IPR016032 Signal transduction response regulator, C-terminal effector RY45_03225 IPR036388 RY45_03225 RY45_03225 IPR036693 RY45_03225 RY45_03230 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_03230 IPR004777 L-lysine exporter/arginine exporter RY45_03235 IPR004843 Calcineurin-like phosphoesterase domain, apaH type RY45_03235 IPR006146 5'-Nucleotidase, conserved site RY45_03235 IPR006179 5'-Nucleotidase/apyrase RY45_03235 IPR008334 5'-Nucleotidase, C-terminal RY45_03235 IPR029052 Metallo-dependent phosphatase-like RY45_03235 IPR036907 RY45_03235 RY45_03240 IPR008816 Glycine zipper 2TM domain RY45_03245 IPR000182 GNAT domain RY45_03245 IPR016181 Acyl-CoA N-acyltransferase RY45_03250 IPR020483 Uncharacterised protein family YgbA RY45_03255 IPR000587 Creatinase, N-terminal RY45_03255 IPR000994 Peptidase M24, structural domain RY45_03255 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RY45_03255 IPR032416 RY45_03255 RY45_03255 IPR036005 RY45_03255 RY45_03260 IPR000524 Transcription regulator HTH, GntR RY45_03260 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_03260 IPR011711 GntR, C-terminal RY45_03260 IPR036388 RY45_03260 RY45_03260 IPR036390 RY45_03260 RY45_03265 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising RY45_03265 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal RY45_03265 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal RY45_03265 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site RY45_03270 IPR000397 Heat shock protein Hsp33 RY45_03270 IPR016153 Heat shock protein Hsp33, N-terminal RY45_03270 IPR016154 Heat shock protein Hsp33, C-terminal RY45_03270 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain RY45_03275 IPR002942 RNA-binding S4 domain RY45_03275 IPR025708 Heat shock protein 15 RY45_03275 IPR036986 RY45_03275 RY45_03280 IPR001639 Type II secretion system protein C RY45_03280 IPR024961 RY45_03280 RY45_03280 IPR036034 RY45_03280 RY45_03285 IPR001775 GspD/PilQ family RY45_03285 IPR004845 Type II secretion system GspD, conserved site RY45_03285 IPR004846 Type II/III secretion system RY45_03285 IPR005644 NolW-like RY45_03285 IPR013356 Type II secretion system GspD RY45_03285 IPR038591 RY45_03285 RY45_03290 IPR001482 Type II secretion system protein E RY45_03290 IPR003593 AAA+ ATPase domain RY45_03290 IPR013369 Type II secretion system GspE RY45_03290 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03290 IPR037257 RY45_03290 RY45_03295 IPR001992 Type II secretion system conserved site RY45_03295 IPR003004 GspF/PilC family RY45_03295 IPR011850 General secretion pathway protein F RY45_03295 IPR018076 Type II secretion system F domain RY45_03300 IPR000983 Bacterial general secretion pathway protein G-type pilin RY45_03300 IPR010054 General secretion pathway protein G RY45_03300 IPR012902 Prokaryotic N-terminal methylation site RY45_03300 IPR013545 Type II secretion system protein G RY45_03305 IPR002416 Type II secretion system protein H RY45_03305 IPR012902 Prokaryotic N-terminal methylation site RY45_03305 IPR022346 General secretion pathway, GspH RY45_03310 IPR003413 Type II secretion system protein I domain RY45_03310 IPR010052 Type II secretion system protein I RY45_03310 IPR012902 Prokaryotic N-terminal methylation site RY45_03315 IPR010055 Type II secretion system protein J RY45_03315 IPR012902 Prokaryotic N-terminal methylation site RY45_03320 IPR005628 General secretion pathway protein K RY45_03320 IPR038072 RY45_03320 RY45_03325 IPR007812 Type II secretion system protein L RY45_03325 IPR024230 GspL, cytoplasmic actin-ATPase-like domain RY45_03325 IPR025691 GspL periplasmic domain RY45_03330 IPR007690 Type II secretion system, protein M RY45_03330 IPR023229 Type II secretion system protein M, periplasmic domain RY45_03335 IPR000645 Type II secretion system protein N, conserved site RY45_03335 IPR022792 Type II secretion system, protein N RY45_03340 IPR000792 Transcription regulator LuxR, C-terminal RY45_03340 IPR016032 Signal transduction response regulator, C-terminal effector RY45_03340 IPR036388 RY45_03340 RY45_03345 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_03345 IPR002305 Aminoacyl-tRNA synthetase, class Ic RY45_03345 IPR002307 Tyrosine-tRNA ligase RY45_03345 IPR002942 RNA-binding S4 domain RY45_03345 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03345 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 RY45_03345 IPR036986 RY45_03345 RY45_03350 IPR006439 HAD hydrolase, subfamily IA RY45_03350 IPR023214 HAD-like domain RY45_03350 IPR036412 RY45_03350 RY45_03355 IPR000086 NUDIX hydrolase domain RY45_03355 IPR015797 NUDIX hydrolase domain-like RY45_03360 IPR000760 Inositol monophosphatase RY45_03360 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial RY45_03360 IPR020550 Inositol monophosphatase, conserved site RY45_03365 IPR018227 Tryptophan/tyrosine permease RY45_03370 IPR002547 tRNA-binding domain RY45_03370 IPR008231 Export-related chaperone protein CsaA RY45_03370 IPR012340 Nucleic acid-binding, OB-fold RY45_03375 IPR003313 AraC-type arabinose-binding/dimerisation domain RY45_03375 IPR009057 Homeodomain-like RY45_03375 IPR014710 RmlC-like jelly roll fold RY45_03375 IPR018060 DNA binding HTH domain, AraC-type RY45_03375 IPR018062 HTH domain AraC-type, conserved site RY45_03375 IPR037923 RY45_03375 RY45_03380 IPR002084 Methionine repressor MetJ RY45_03380 IPR010985 Ribbon-helix-helix RY45_03380 IPR023453 Methionine repressor MetJ domain RY45_03385 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme RY45_03385 IPR011821 O-succinylhomoserine (thiol)-lyase RY45_03385 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_03385 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_03385 IPR015424 Pyridoxal phosphate-dependent transferase RY45_03390 IPR001048 Aspartate/glutamate/uridylate kinase RY45_03390 IPR001341 Aspartate kinase domain RY45_03390 IPR001342 Homoserine dehydrogenase, catalytic RY45_03390 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding RY45_03390 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I RY45_03390 IPR018042 Aspartate kinase, conserved site RY45_03390 IPR019811 Homoserine dehydrogenase, conserved site RY45_03390 IPR036291 RY45_03390 RY45_03390 IPR036393 RY45_03390 RY45_03395 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_03395 IPR018129 Phosphoenolpyruvate carboxylase, active site RY45_03395 IPR021135 Phosphoenolpyruvate carboxylase RY45_03395 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type RY45_03395 IPR033129 RY45_03395 RY45_03400 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RY45_03400 IPR002933 Peptidase M20 RY45_03400 IPR010169 Acetylornithine deacetylase (ArgE) RY45_03400 IPR011650 Peptidase M20, dimerisation domain RY45_03400 IPR036264 RY45_03400 RY45_03405 IPR000534 Semialdehyde dehydrogenase, NAD-binding RY45_03405 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 RY45_03405 IPR012280 Semialdehyde dehydrogenase, dimerisation domain RY45_03405 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site RY45_03405 IPR036291 RY45_03405 RY45_03410 IPR001048 Aspartate/glutamate/uridylate kinase RY45_03410 IPR004662 Acetylglutamate kinase RY45_03410 IPR036393 RY45_03410 RY45_03410 IPR037528 RY45_03410 RY45_03415 IPR002292 Ornithine/putrescine carbamoyltransferase RY45_03415 IPR006130 Aspartate/ornithine carbamoyltransferase RY45_03415 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain RY45_03415 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding RY45_03415 IPR024904 Ornithine carbamoyltransferase RY45_03415 IPR036901 RY45_03415 RY45_03420 IPR001518 Argininosuccinate synthase RY45_03420 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03420 IPR018223 Argininosuccinate synthase, conserved site RY45_03420 IPR023434 Argininosuccinate synthase, type 1 subfamily RY45_03420 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body RY45_03425 IPR000362 Fumarate lyase family RY45_03425 IPR008948 L-Aspartase-like RY45_03425 IPR009049 Argininosuccinate lyase RY45_03425 IPR020557 Fumarate lyase, conserved site RY45_03425 IPR022761 Fumarate lyase, N-terminal RY45_03425 IPR024083 Fumarase/histidase, N-terminal RY45_03425 IPR029419 Argininosuccinate lyase, C-terminal RY45_03445 IPR010718 Protein of unknown function DUF1294 RY45_03445 IPR012156 Cold shock, CspA RY45_03450 IPR001451 Bacterial transferase hexapeptide repeat RY45_03450 IPR011004 Trimeric LpxA-like RY45_03450 IPR018357 Hexapeptide transferase, conserved site RY45_03450 IPR024688 Maltose/galactoside acetyltransferase RY45_03455 IPR003416 MgtC/SapB/SrpB transporter RY45_03455 IPR025105 Domain of unknown function DUF4010 RY45_03460 IPR000957 Sulphate/thiosulphate-binding, conserved site RY45_03460 IPR005669 Thiosulphate/Sulfate-binding protein RY45_03460 IPR034408 RY45_03460 RY45_03465 IPR010662 Putative hydrolase RBBP9/YdeN RY45_03465 IPR029058 Alpha/Beta hydrolase fold RY45_03470 IPR000515 MetI-like domain RY45_03470 IPR005667 Sulphate ABC transporter permease protein 2 RY45_03470 IPR011865 Sulphate ABC transporter, permease protein CysT RY45_03470 IPR035906 RY45_03470 RY45_03475 IPR000515 MetI-like domain RY45_03475 IPR005667 Sulphate ABC transporter permease protein 2 RY45_03475 IPR011866 Sulphate ABC transporter, permease protein CysW RY45_03475 IPR035906 RY45_03475 RY45_03480 IPR003439 ABC transporter-like RY45_03480 IPR003593 AAA+ ATPase domain RY45_03480 IPR005666 Sulphate transport system permease protein 1 RY45_03480 IPR008995 Molybdate/tungstate binding, C-terminal RY45_03480 IPR017871 ABC transporter, conserved site RY45_03480 IPR024765 TOBE-like domain RY45_03480 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03485 IPR000847 Transcription regulator HTH, LysR RY45_03485 IPR005119 LysR, substrate-binding RY45_03485 IPR036388 RY45_03485 RY45_03485 IPR036390 RY45_03485 RY45_03490 IPR004302 Chitin-binding, domain 3 RY45_03490 IPR014756 Immunoglobulin E-set RY45_03495 IPR003660 HAMP linker domain RY45_03495 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_03495 IPR004090 Chemotaxis methyl-accepting receptor RY45_03495 IPR033480 RY45_03495 RY45_03500 IPR001567 Peptidase M3A/M3B RY45_03500 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RY45_03500 IPR024079 Metallopeptidase, catalytic domain RY45_03505 IPR001638 Extracellular solute-binding protein, family 3 RY45_03510 IPR021459 Glycosyl hydrolases related to GH101 family, GHL1-GHL3 RY45_03520 IPR024079 Metallopeptidase, catalytic domain RY45_03525 IPR005151 Tail specific protease RY45_03525 IPR011042 Six-bladed beta-propeller, TolB-like RY45_03525 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like RY45_03525 IPR011659 WD40-like Beta Propeller RY45_03525 IPR012393 Tricorn protease RY45_03525 IPR028204 Tricorn protease C1 domain RY45_03525 IPR029045 ClpP/crotonase-like domain RY45_03525 IPR036034 RY45_03525 RY45_03530 IPR005490 L,D-transpeptidase catalytic domain RY45_03530 IPR038063 RY45_03530 RY45_03535 IPR011606 Branched-chain amino acid transport, permease RY45_03540 IPR008407 Branched-chain amino acid transport, AzlD RY45_03545 IPR016905 Glycyl radical enzyme, HI0521, predicted RY45_03550 IPR001989 Radical-activating enzyme, conserved site RY45_03550 IPR007197 Radical SAM RY45_03550 IPR012839 Glycyl radical enzyme activase RY45_03550 IPR013785 Aldolase-type TIM barrel RY45_03550 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_03550 IPR023912 Glycyl radical enzyme activase, YjjW, bact RY45_03555 IPR014949 Protein of unknown function DUF1820 RY45_03560 IPR000847 Transcription regulator HTH, LysR RY45_03560 IPR005119 LysR, substrate-binding RY45_03560 IPR036388 RY45_03560 RY45_03560 IPR036390 RY45_03560 RY45_03565 IPR000796 Aspartate/other aminotransferase RY45_03565 IPR004839 Aminotransferase, class I/classII RY45_03565 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_03565 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_03565 IPR015424 Pyridoxal phosphate-dependent transferase RY45_03570 IPR003735 Metal-sensitive transcriptional repressor RY45_03570 IPR038390 RY45_03570 RY45_03575 IPR002524 Cation efflux protein RY45_03575 IPR027469 Cation efflux protein transmembrane domain RY45_03585 IPR004193 Glycoside hydrolase, family 13, N-terminal RY45_03585 IPR005323 Bacterial pullanase-associated domain RY45_03585 IPR011839 Alpha-1,6-glucosidases, pullulanase-type RY45_03585 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_03585 IPR013783 Immunoglobulin-like fold RY45_03585 IPR013784 Carbohydrate-binding-like fold RY45_03585 IPR014756 Immunoglobulin E-set RY45_03585 IPR017853 Glycoside hydrolase, superfamily RY45_03585 IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal RY45_03590 IPR001757 Cation-transporting P-type ATPase RY45_03590 IPR006121 Heavy metal-associated domain, HMA RY45_03590 IPR008250 P-type ATPase, A domain RY45_03590 IPR017969 Heavy-metal-associated, conserved site RY45_03590 IPR018303 P-type ATPase, phosphorylation site RY45_03590 IPR023214 HAD-like domain RY45_03590 IPR023298 P-type ATPase, transmembrane domain RY45_03590 IPR023299 P-type ATPase, cytoplasmic domain N RY45_03590 IPR027256 Cation-transporting P-type ATPase, subfamily IB RY45_03590 IPR036163 RY45_03590 RY45_03590 IPR036412 RY45_03590 RY45_03595 IPR002065 Putative thiol peroxidase Tpx RY45_03595 IPR013740 Redoxin RY45_03595 IPR018219 Thiol peroxidase conserved site RY45_03595 IPR036249 RY45_03595 RY45_03605 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_03605 IPR001650 Helicase, C-terminal RY45_03605 IPR011545 DEAD/DEAH box helicase domain RY45_03605 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_03605 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03610 IPR038607 RY45_03610 RY45_03620 IPR005135 Endonuclease/exonuclease/phosphatase RY45_03620 IPR036691 RY45_03620 RY45_03625 IPR000014 PAS domain RY45_03625 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_03625 IPR004090 Chemotaxis methyl-accepting receptor RY45_03625 IPR013655 PAS fold-3 RY45_03625 IPR035965 RY45_03625 RY45_03630 IPR003675 CAAX amino terminal protease RY45_03640 IPR008249 Uncharacterised protein family UPF0231 RY45_03645 IPR008599 Putative sugar diacid recognition RY45_03645 IPR025736 PucR C-terminal helix-turn-helix domain RY45_03650 IPR003474 Gluconate transporter RY45_03655 IPR004381 Glycerate kinase RY45_03655 IPR018193 Glycerate kinase, flavodoxin-like domain RY45_03655 IPR018197 Glycerate kinase, restriction-enzyme-like fold RY45_03655 IPR036129 RY45_03655 RY45_03660 IPR009915 NnrU RY45_03665 IPR000889 Glutathione peroxidase RY45_03665 IPR036249 RY45_03665 RY45_03670 IPR000847 Transcription regulator HTH, LysR RY45_03670 IPR005119 LysR, substrate-binding RY45_03670 IPR036388 RY45_03670 RY45_03670 IPR036390 RY45_03670 RY45_03675 IPR002668 Concentrative nucleoside transporter N-terminal domain RY45_03675 IPR011642 Nucleoside recognition Gate RY45_03675 IPR011657 Concentrative nucleoside transporter C-terminal domain RY45_03680 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site RY45_03680 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain RY45_03680 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding RY45_03680 IPR023546 Methylated-DNA--protein-cysteine methyltransferase RY45_03680 IPR036217 RY45_03680 RY45_03680 IPR036388 RY45_03680 RY45_03680 IPR036631 RY45_03680 RY45_03685 IPR000352 Peptide chain release factor class I/class II RY45_03690 IPR002187 Nitrogen regulatory protein PII RY45_03690 IPR002332 Nitrogen regulatory protein P-II, urydylation site RY45_03690 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_03690 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_03690 IPR017918 Nitrogen regulatory protein PII, conserved site RY45_03695 IPR026045 Ferric binding protein RY45_03700 IPR000515 MetI-like domain RY45_03700 IPR035906 RY45_03700 RY45_03705 IPR003439 ABC transporter-like RY45_03705 IPR003593 AAA+ ATPase domain RY45_03705 IPR008995 Molybdate/tungstate binding, C-terminal RY45_03705 IPR017871 ABC transporter, conserved site RY45_03705 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03710 IPR006314 Dyp-type peroxidase RY45_03710 IPR011008 Dimeric alpha-beta barrel RY45_03715 IPR001669 Arginine repressor RY45_03715 IPR020899 Arginine repressor, C-terminal RY45_03715 IPR020900 Arginine repressor, DNA-binding domain RY45_03715 IPR036251 RY45_03715 RY45_03715 IPR036388 RY45_03715 RY45_03715 IPR036390 RY45_03715 RY45_03720 IPR003439 ABC transporter-like RY45_03720 IPR003593 AAA+ ATPase domain RY45_03720 IPR017871 ABC transporter, conserved site RY45_03720 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03720 IPR030679 RY45_03720 RY45_03725 IPR001320 Ionotropic glutamate receptor RY45_03725 IPR001638 Extracellular solute-binding protein, family 3 RY45_03725 IPR018313 Extracellular solute-binding protein, family 3, conserved site RY45_03730 IPR000515 MetI-like domain RY45_03730 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_03730 IPR035906 RY45_03730 RY45_03735 IPR000515 MetI-like domain RY45_03735 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_03735 IPR035906 RY45_03735 RY45_03740 IPR001236 Lactate/malate dehydrogenase, N-terminal RY45_03740 IPR001252 Malate dehydrogenase, active site RY45_03740 IPR001557 L-lactate/malate dehydrogenase RY45_03740 IPR010097 Malate dehydrogenase, type 1 RY45_03740 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal RY45_03740 IPR022383 Lactate/malate dehydrogenase, C-terminal RY45_03740 IPR023958 Malate dehydrogenase, type 1, bacterial RY45_03740 IPR036291 RY45_03740 RY45_03750 IPR006597 Sel1-like RY45_03750 IPR011990 Tetratricopeptide-like helical domain RY45_03755 IPR000971 Globin RY45_03755 IPR001221 Phenol hydroxylase reductase RY45_03755 IPR001433 Oxidoreductase FAD/NAD(P)-binding RY45_03755 IPR008333 Oxidoreductase, FAD-binding domain RY45_03755 IPR009050 Globin-like RY45_03755 IPR012292 Globin, structural domain RY45_03755 IPR017938 Riboflavin synthase-like beta-barrel RY45_03755 IPR023950 Flavohemoprotein RY45_03755 IPR039261 RY45_03755 RY45_03760 IPR000944 Transcription regulator Rrf2-like RY45_03760 IPR036388 RY45_03760 RY45_03760 IPR036390 RY45_03760 RY45_03765 IPR000644 CBS domain RY45_03765 IPR002550 Domain of unknown function DUF21 RY45_03765 IPR005170 Transporter-associated domain RY45_03765 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_03765 IPR036318 RY45_03765 RY45_03770 IPR002541 Cytochrome c assembly protein RY45_03775 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain RY45_03775 IPR003593 AAA+ ATPase domain RY45_03775 IPR004125 Signal recognition particle, SRP54 subunit, M-domain RY45_03775 IPR004780 Signal recognition particle protein Ffh RY45_03775 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle RY45_03775 IPR022941 Signal recognition particle, SRP54 subunit RY45_03775 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03775 IPR036891 RY45_03775 RY45_03780 IPR000307 Ribosomal protein S16 RY45_03780 IPR023803 Ribosomal protein S16 domain RY45_03785 IPR002676 RimM protein RY45_03785 IPR009000 Translation protein, beta-barrel domain RY45_03785 IPR011033 PRC-barrel-like RY45_03785 IPR011961 16S rRNA processing protein RimM RY45_03785 IPR027275 PRC-barrel domain RY45_03785 IPR036976 RY45_03785 RY45_03790 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria RY45_03790 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain RY45_03790 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal RY45_03790 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_03790 IPR029028 Alpha/beta knot methyltransferases RY45_03795 IPR001857 Ribosomal protein L19 RY45_03795 IPR008991 Translation protein SH3-like domain RY45_03795 IPR018257 Ribosomal protein L19, conserved site RY45_03795 IPR038657 RY45_03795 RY45_03800 IPR013783 Immunoglobulin-like fold RY45_03800 IPR014756 Immunoglobulin E-set RY45_03805 IPR004230 DNA mismatch repair protein MutH RY45_03805 IPR011335 Restriction endonuclease type II-like RY45_03805 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II RY45_03805 IPR037057 RY45_03805 RY45_03815 IPR000086 NUDIX hydrolase domain RY45_03815 IPR015797 NUDIX hydrolase domain-like RY45_03815 IPR020084 NUDIX hydrolase, conserved site RY45_03815 IPR020476 NUDIX hydrolase RY45_03815 IPR022927 RNA pyrophosphohydrolase RppH RY45_03820 IPR000121 PEP-utilising enzyme, C-terminal RY45_03820 IPR003018 GAF domain RY45_03820 IPR006318 Phosphoenolpyruvate-utilising enzyme RY45_03820 IPR008279 PEP-utilising enzyme, mobile domain RY45_03820 IPR008731 Phosphotransferase system, enzyme I N-terminal RY45_03820 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_03820 IPR018274 PEP-utilising enzyme, active site RY45_03820 IPR029016 GAF domain-like RY45_03820 IPR036618 RY45_03820 RY45_03820 IPR036637 RY45_03820 RY45_03825 IPR001640 Prolipoprotein diacylglyceryl transferase RY45_03830 IPR000398 Thymidylate synthase RY45_03830 IPR020940 Thymidylate synthase, active site RY45_03830 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain RY45_03830 IPR036926 RY45_03830 RY45_03835 IPR004670 Na+/H+ antiporter NhaA RY45_03835 IPR023171 Na/H antiporter domain RY45_03845 IPR000847 Transcription regulator HTH, LysR RY45_03845 IPR005119 LysR, substrate-binding RY45_03845 IPR036388 RY45_03845 RY45_03845 IPR036390 RY45_03845 RY45_03850 IPR001845 HTH ArsR-type DNA-binding domain RY45_03850 IPR036388 RY45_03850 RY45_03850 IPR036390 RY45_03850 RY45_03855 IPR002583 Ribosomal protein S20 RY45_03855 IPR036510 RY45_03855 RY45_03860 IPR004268 Flagellin assembly, membrane protein MviN RY45_03865 IPR002606 Riboflavin kinase, bacterial RY45_03865 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03865 IPR015864 FAD synthetase RY45_03865 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic RY45_03865 IPR023465 Riboflavin kinase domain RY45_03870 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_03870 IPR002300 Aminoacyl-tRNA synthetase, class Ia RY45_03870 IPR002301 Isoleucine-tRNA ligase RY45_03870 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RY45_03870 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RY45_03870 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase RY45_03870 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RY45_03870 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03870 IPR023585 Isoleucine-tRNA ligase, type 1 RY45_03875 IPR001872 Peptidase A8, signal peptidase II RY45_03880 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain RY45_03885 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase RY45_03890 IPR012902 Prokaryotic N-terminal methylation site RY45_03890 IPR018247 EF-Hand 1, calcium-binding site RY45_03890 IPR022346 General secretion pathway, GspH RY45_03895 IPR012902 Prokaryotic N-terminal methylation site RY45_03895 IPR013362 Pilus modification type IV, PilV RY45_03900 IPR032092 RY45_03900 RY45_03905 IPR025205 PilX/PilW C-terminal domain RY45_03905 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain RY45_03910 IPR008707 PilC beta-propeller domain RY45_03910 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily RY45_03910 IPR018247 EF-Hand 1, calcium-binding site RY45_03915 IPR012902 Prokaryotic N-terminal methylation site RY45_03915 IPR031982 RY45_03915 RY45_03920 IPR000983 Bacterial general secretion pathway protein G-type pilin RY45_03920 IPR012902 Prokaryotic N-terminal methylation site RY45_03920 IPR031982 RY45_03920 RY45_03925 IPR012902 Prokaryotic N-terminal methylation site RY45_03925 IPR022346 General secretion pathway, GspH RY45_03930 IPR016419 Prepilin peptidase-dependent protein B, predicted RY45_03940 IPR012902 Prokaryotic N-terminal methylation site RY45_03945 IPR003010 Carbon-nitrogen hydrolase RY45_03945 IPR003694 NAD(+) synthetase RY45_03945 IPR014445 Glutamine-dependent NAD(+) synthetase RY45_03945 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03945 IPR022310 NAD/GMP synthase RY45_03945 IPR036526 RY45_03945 RY45_03950 IPR002187 Nitrogen regulatory protein PII RY45_03950 IPR002332 Nitrogen regulatory protein P-II, urydylation site RY45_03950 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_03950 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_03950 IPR017918 Nitrogen regulatory protein PII, conserved site RY45_03955 IPR023346 Lysozyme-like domain RY45_03960 IPR003815 S-ribosylhomocysteinase (LuxS) RY45_03960 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like RY45_03960 IPR037005 RY45_03960 RY45_03965 IPR000160 GGDEF domain RY45_03965 IPR029787 Nucleotide cyclase RY45_03970 IPR001900 RY45_03970 RY45_03970 IPR003029 Ribosomal protein S1, RNA-binding domain RY45_03970 IPR004476 Ribonuclease II/ribonuclease R RY45_03970 IPR011129 Cold shock protein RY45_03970 IPR011805 Ribonuclease R RY45_03970 IPR012340 Nucleic acid-binding, OB-fold RY45_03970 IPR013223 Ribonuclease B, N-terminal OB domain RY45_03970 IPR013668 Ribonuclease R winged-helix domain RY45_03970 IPR022966 Ribonuclease II/R, conserved site RY45_03970 IPR022967 RNA-binding domain, S1 RY45_03975 IPR021681 Protein of unknown function DUF3265 RY45_03980 IPR001537 tRNA/rRNA methyltransferase, SpoU type RY45_03980 IPR004441 RNA methyltransferase TrmH family RY45_03980 IPR013123 RNA 2-O ribose methyltransferase, substrate binding RY45_03980 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB RY45_03980 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_03980 IPR029028 Alpha/beta knot methyltransferases RY45_03980 IPR029064 50S ribosomal protein L30e-like RY45_03985 IPR000595 Cyclic nucleotide-binding domain RY45_03985 IPR014710 RmlC-like jelly roll fold RY45_03985 IPR018490 Cyclic nucleotide-binding-like RY45_03990 IPR000182 GNAT domain RY45_03990 IPR016181 Acyl-CoA N-acyltransferase RY45_03995 IPR000620 Drug/metabolite transporter RY45_04000 IPR000620 Drug/metabolite transporter RY45_04005 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain RY45_04010 IPR001046 NRAMP family RY45_04015 IPR000529 Ribosomal protein S6 RY45_04015 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RY45_04015 IPR020814 Ribosomal protein S6, plastid/chloroplast RY45_04015 IPR035980 RY45_04015 RY45_04020 IPR001648 Ribosomal protein S18 RY45_04020 IPR018275 Ribosomal protein S18, conserved site RY45_04020 IPR036870 RY45_04020 RY45_04025 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RY45_04025 IPR020069 Ribosomal protein L9, C-terminal RY45_04025 IPR020070 Ribosomal protein L9, N-terminal RY45_04025 IPR020594 Ribosomal protein L9, bacteria/chloroplast RY45_04025 IPR036791 RY45_04025 RY45_04025 IPR036935 RY45_04025 RY45_04030 IPR001433 Oxidoreductase FAD/NAD(P)-binding RY45_04030 IPR017938 Riboflavin synthase-like beta-barrel RY45_04030 IPR039261 RY45_04030 RY45_04045 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site RY45_04045 IPR011032 GroES (chaperonin 10)-like RY45_04045 IPR013154 Alcohol dehydrogenase GroES-like RY45_04045 IPR020843 Polyketide synthase, enoylreductase RY45_04045 IPR036291 RY45_04045 RY45_04050 IPR020143 Uncharacterised protein family, RP436 RY45_04050 IPR032816 RY45_04050 RY45_04055 IPR007863 Peptidase M16, C-terminal domain RY45_04055 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like RY45_04055 IPR011765 Peptidase M16, N-terminal RY45_04060 IPR006334 Glutamate--cysteine ligase, monofunctional RY45_04060 IPR007370 Glutamate--cysteine ligase RY45_04060 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain RY45_04065 IPR027839 Protein of unknown function DUF4432 RY45_04070 IPR000873 AMP-dependent synthetase/ligase RY45_04070 IPR020845 AMP-binding, conserved site RY45_04080 IPR000182 GNAT domain RY45_04080 IPR006464 Ribosomal-protein-alanine acetyltransferase RY45_04080 IPR016181 Acyl-CoA N-acyltransferase RY45_04085 IPR004615 DNA polymerase III, psi subunit RY45_04090 IPR003593 AAA+ ATPase domain RY45_04090 IPR011704 ATPase, dynein-related, AAA domain RY45_04090 IPR022547 ATPase, RavA, C-terminal RY45_04090 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04095 IPR002035 von Willebrand factor, type A RY45_04095 IPR008912 Uncharacterised protein family CoxE-like RY45_04095 IPR036465 RY45_04095 RY45_04100 IPR000160 GGDEF domain RY45_04100 IPR011990 Tetratricopeptide-like helical domain RY45_04100 IPR019734 Tetratricopeptide repeat RY45_04100 IPR029787 Nucleotide cyclase RY45_04105 IPR000795 Elongation factor, GTP-binding domain RY45_04105 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 RY45_04105 IPR004548 Peptide chain release factor 3 RY45_04105 IPR005225 Small GTP-binding protein domain RY45_04105 IPR009000 Translation protein, beta-barrel domain RY45_04105 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04105 IPR031157 RY45_04105 RY45_04105 IPR032090 RY45_04105 RY45_04105 IPR035647 RY45_04105 RY45_04105 IPR038467 RY45_04105 RY45_04110 IPR008317 Uncharacterised conserved protein UCP030561 RY45_04110 IPR032710 RY45_04110 RY45_04110 IPR037401 RY45_04110 RY45_04115 IPR000835 MarR-type HTH domain RY45_04115 IPR036388 RY45_04115 RY45_04115 IPR036390 RY45_04115 RY45_04120 IPR003779 Carboxymuconolactone decarboxylase-like RY45_04120 IPR004675 Alkylhydroperoxidase AhpD core RY45_04120 IPR029032 AhpD-like RY45_04125 IPR000182 GNAT domain RY45_04125 IPR000835 MarR-type HTH domain RY45_04125 IPR016181 Acyl-CoA N-acyltransferase RY45_04125 IPR023187 Transcriptional regulator MarR-type, conserved site RY45_04125 IPR036388 RY45_04125 RY45_04125 IPR036390 RY45_04125 RY45_04130 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal RY45_04130 IPR013785 Aldolase-type TIM barrel RY45_04135 IPR001647 DNA-binding HTH domain, TetR-type RY45_04135 IPR009057 Homeodomain-like RY45_04135 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_04135 IPR036271 RY45_04135 RY45_04140 IPR007569 Domain of unknown function DUF559 RY45_04140 IPR011335 Restriction endonuclease type II-like RY45_04145 IPR000847 Transcription regulator HTH, LysR RY45_04145 IPR005119 LysR, substrate-binding RY45_04145 IPR036388 RY45_04145 RY45_04145 IPR036390 RY45_04145 RY45_04150 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type RY45_04150 IPR017754 Agmatine deiminase RY45_04155 IPR023631 Amidase signature domain RY45_04155 IPR036928 RY45_04155 RY45_04160 IPR010261 Tir chaperone protein (CesT) family RY45_04170 IPR001018 Beta-lactamase, class-B, conserved site RY45_04170 IPR001279 Beta-lactamase-like RY45_04170 IPR036866 RY45_04170 RY45_04185 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_04185 IPR001650 Helicase, C-terminal RY45_04185 IPR011545 DEAD/DEAH box helicase domain RY45_04185 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_04185 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04190 IPR008517 Protein of unknown function DUF799 RY45_04195 IPR014508 Uncharacterised conserved protein, TPR-like repeat RY45_04200 IPR005534 Curli production assembly/transport component CsgG RY45_04205 IPR000847 Transcription regulator HTH, LysR RY45_04205 IPR005119 LysR, substrate-binding RY45_04205 IPR036388 RY45_04205 RY45_04205 IPR036390 RY45_04205 RY45_04210 IPR011701 Major facilitator superfamily RY45_04210 IPR036259 RY45_04210 RY45_04220 IPR002747 S-adenosyl-l-methionine hydroxide adenosyltransferase RY45_04220 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal RY45_04220 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal RY45_04225 IPR004852 Di-haem cytochrome c peroxidase RY45_04225 IPR018247 EF-Hand 1, calcium-binding site RY45_04225 IPR036909 RY45_04225 RY45_04235 IPR001451 Bacterial transferase hexapeptide repeat RY45_04235 IPR011004 Trimeric LpxA-like RY45_04240 IPR001568 Ribonuclease T2-like RY45_04240 IPR018188 Ribonuclease T2, active site RY45_04240 IPR033130 RY45_04240 RY45_04240 IPR036430 RY45_04240 RY45_04250 IPR004136 2-nitropropane dioxygenase, NPD RY45_04250 IPR013785 Aldolase-type TIM barrel RY45_04285 IPR000086 NUDIX hydrolase domain RY45_04285 IPR015797 NUDIX hydrolase domain-like RY45_04285 IPR020084 NUDIX hydrolase, conserved site RY45_04285 IPR020476 NUDIX hydrolase RY45_04290 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_04290 IPR003660 HAMP linker domain RY45_04290 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_04290 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_04290 IPR036097 RY45_04290 RY45_04290 IPR036890 RY45_04290 RY45_04295 IPR001789 Signal transduction response regulator, receiver domain RY45_04295 IPR001867 Signal transduction response regulator, C-terminal RY45_04295 IPR011006 CheY-like superfamily RY45_04295 IPR016032 Signal transduction response regulator, C-terminal effector RY45_04295 IPR036388 RY45_04295 RY45_04300 IPR006143 RND efflux pump, membrane fusion protein RY45_04300 IPR032317 RY45_04300 RY45_04305 IPR003439 ABC transporter-like RY45_04305 IPR003593 AAA+ ATPase domain RY45_04305 IPR003838 Permease FtsX-like RY45_04305 IPR017871 ABC transporter, conserved site RY45_04305 IPR025857 MacB-like periplasmic core domain RY45_04305 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04310 IPR001638 Extracellular solute-binding protein, family 3 RY45_04315 IPR003439 ABC transporter-like RY45_04315 IPR003593 AAA+ ATPase domain RY45_04315 IPR017871 ABC transporter, conserved site RY45_04315 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04315 IPR030679 RY45_04315 RY45_04320 IPR000515 MetI-like domain RY45_04320 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_04320 IPR035906 RY45_04320 RY45_04325 IPR000515 MetI-like domain RY45_04325 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_04325 IPR035906 RY45_04325 RY45_04330 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RY45_04330 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_04330 IPR036052 RY45_04330 RY45_04335 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RY45_04335 IPR002470 Peptidase S9A, prolyl oligopeptidase RY45_04335 IPR002471 Peptidase S9, serine active site RY45_04335 IPR023302 Peptidase S9A, N-terminal domain RY45_04335 IPR029058 Alpha/Beta hydrolase fold RY45_04340 IPR007844 AsmA RY45_04345 IPR000182 GNAT domain RY45_04345 IPR016181 Acyl-CoA N-acyltransferase RY45_04350 IPR002347 Glucose/ribitol dehydrogenase RY45_04350 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_04350 IPR036291 RY45_04350 RY45_04355 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain RY45_04355 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase RY45_04355 IPR023057 Glutamate-ammonia-ligase adenylyltransferase RY45_04360 IPR000182 GNAT domain RY45_04360 IPR016181 Acyl-CoA N-acyltransferase RY45_04365 IPR003660 HAMP linker domain RY45_04365 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_04370 IPR013099 Two pore domain potassium channel domain RY45_04370 IPR027359 Voltage-dependent channel, four helix bundle domain RY45_04370 IPR028325 Voltage-gated potassium channel RY45_04375 IPR003646 SH3-like domain, bacterial-type RY45_04375 IPR016476 SH3 domain protein RY45_04380 IPR002872 Proline dehydrogenase domain RY45_04380 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 RY45_04380 IPR015590 Aldehyde dehydrogenase domain RY45_04380 IPR016160 Aldehyde dehydrogenase, cysteine active site RY45_04380 IPR016161 Aldehyde/histidinol dehydrogenase RY45_04380 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_04380 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_04380 IPR024082 Proline dehydrogenase PutA, domain II RY45_04380 IPR024089 Proline dehydrogenase PutA, domain I/II RY45_04380 IPR025703 Bifunctional protein PutA RY45_04380 IPR029041 FAD-linked oxidoreductase-like RY45_04385 IPR000086 NUDIX hydrolase domain RY45_04385 IPR015376 Zinc ribbon, NADH pyrophosphatase RY45_04385 IPR015797 NUDIX hydrolase domain-like RY45_04385 IPR020084 NUDIX hydrolase, conserved site RY45_04395 IPR000600 ROK RY45_04400 IPR006422 D-erythrose-4-phosphate dehydrogenase RY45_04400 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain RY45_04400 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain RY45_04400 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family RY45_04400 IPR036291 RY45_04400 RY45_04405 IPR001576 Phosphoglycerate kinase RY45_04405 IPR015824 Phosphoglycerate kinase, N-terminal RY45_04405 IPR015911 Phosphoglycerate kinase, conserved site RY45_04405 IPR036043 RY45_04405 RY45_04410 IPR000771 Ketose-bisphosphate aldolase, class-II RY45_04410 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype RY45_04410 IPR013785 Aldolase-type TIM barrel RY45_04425 IPR003834 Cytochrome c assembly protein, transmembrane domain RY45_04425 IPR017937 Thioredoxin, conserved site RY45_04425 IPR022910 Thiol:disulphide interchange protein DsbD RY45_04425 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RY45_04425 IPR036249 RY45_04425 RY45_04425 IPR036929 RY45_04425 RY45_04430 IPR004323 Divalent ion tolerance protein, CutA RY45_04430 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_04430 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_04440 IPR007896 Transmembrane pair, bacterial RY45_04445 IPR000847 Transcription regulator HTH, LysR RY45_04445 IPR005119 LysR, substrate-binding RY45_04445 IPR036388 RY45_04445 RY45_04445 IPR036390 RY45_04445 RY45_04450 IPR006222 Glycine cleavage T-protein, N-terminal RY45_04450 IPR017703 YgfZ/GcvT conserved site RY45_04450 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA RY45_04450 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RY45_04455 IPR005631 Flavinator of succinate dehydrogenase RY45_04455 IPR036714 RY45_04455 RY45_04465 IPR003953 FAD binding domain RY45_04465 IPR005288 L-aspartate oxidase RY45_04465 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal RY45_04465 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RY45_04465 IPR036188 RY45_04465 RY45_04465 IPR037099 RY45_04465 RY45_04470 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RY45_04470 IPR007627 RNA polymerase sigma-70 region 2 RY45_04470 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 RY45_04470 IPR013324 RNA polymerase sigma factor, region 3/4 RY45_04470 IPR013325 RNA polymerase sigma factor, region 2 RY45_04470 IPR014284 RNA polymerase sigma-70 like domain RY45_04470 IPR014286 RNA polymerase sigma-70 RpoE type RY45_04470 IPR036388 RY45_04470 RY45_04475 IPR005572 Anti sigma-E protein RseA, N-terminal RY45_04475 IPR005573 Anti sigma-E protein RseA, C-terminal RY45_04475 IPR026279 Sigma-E factor negative regulatory protein RseA RY45_04475 IPR036147 RY45_04475 RY45_04480 IPR005588 MucB/RseB RY45_04480 IPR033434 RY45_04480 RY45_04480 IPR033436 RY45_04480 RY45_04480 IPR038484 RY45_04480 RY45_04485 IPR026268 Protein RseC RY45_04490 IPR000640 Translation elongation factor EFG, V domain RY45_04490 IPR000795 Elongation factor, GTP-binding domain RY45_04490 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 RY45_04490 IPR005225 Small GTP-binding protein domain RY45_04490 IPR006297 Elongation factor 4 RY45_04490 IPR013842 GTP-binding protein LepA, C-terminal RY45_04490 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04490 IPR031157 RY45_04490 RY45_04490 IPR035647 RY45_04490 RY45_04490 IPR038363 RY45_04490 RY45_04495 IPR000223 Peptidase S26A, signal peptidase I RY45_04495 IPR015927 Peptidase S24/S26A/S26B/S26C RY45_04495 IPR019533 Peptidase S26 RY45_04495 IPR019756 Peptidase S26A, signal peptidase I, serine active site RY45_04495 IPR019757 Peptidase S26A, signal peptidase I, lysine active site RY45_04495 IPR019758 Peptidase S26A, signal peptidase I, conserved site RY45_04495 IPR036286 RY45_04495 RY45_04500 IPR000999 Ribonuclease III domain RY45_04500 IPR011907 Ribonuclease III RY45_04500 IPR014720 Double-stranded RNA-binding domain RY45_04500 IPR036389 RY45_04500 RY45_04505 IPR004044 K Homology domain, type 2 RY45_04505 IPR005225 Small GTP-binding protein domain RY45_04505 IPR005662 GTP-binding protein Era RY45_04505 IPR006073 GTP binding domain RY45_04505 IPR009019 K homology domain, prokaryotic type RY45_04505 IPR015946 K homology domain-like, alpha/beta RY45_04505 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04510 IPR003717 Recombination protein O, RecO RY45_04510 IPR012340 Nucleic acid-binding, OB-fold RY45_04510 IPR022572 DNA replication/recombination mediator RecO, N-terminal RY45_04510 IPR037278 RY45_04510 RY45_04515 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ RY45_04515 IPR013785 Aldolase-type TIM barrel RY45_04515 IPR036130 RY45_04515 RY45_04520 IPR013785 Aldolase-type TIM barrel RY45_04520 IPR017853 Glycoside hydrolase, superfamily RY45_04525 IPR000771 Ketose-bisphosphate aldolase, class-II RY45_04525 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY RY45_04525 IPR013785 Aldolase-type TIM barrel RY45_04530 IPR003764 N-acetylglucosamine-6-phosphate deacetylase RY45_04530 IPR006680 Amidohydrolase 1 RY45_04530 IPR011059 Metal-dependent hydrolase, composite domain RY45_04530 IPR032466 RY45_04530 RY45_04535 IPR004701 Phosphotransferase system, mannose-type IIA component RY45_04535 IPR036662 RY45_04535 RY45_04540 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component RY45_04545 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit RY45_04550 IPR004720 Phosphotransferase system, sorbose subfamily IIB component RY45_04550 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup RY45_04550 IPR036667 RY45_04550 RY45_04555 IPR001347 Sugar isomerase (SIS) RY45_04555 IPR014180 Sugar isomerase, AgaS RY45_04560 IPR012062 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit GatZ/KbaZ RY45_04560 IPR013785 Aldolase-type TIM barrel RY45_04565 IPR001034 HTH DeoR N-terminal domain RY45_04565 IPR014036 DeoR C-terminal sensor domain RY45_04565 IPR018356 Transcription regulator, HTH DeoR-type, conserved site RY45_04565 IPR036388 RY45_04565 RY45_04565 IPR036390 RY45_04565 RY45_04565 IPR037171 RY45_04565 RY45_04570 IPR002477 Peptidoglycan binding-like RY45_04570 IPR002502 N-acetylmuramoyl-L-alanine amidase domain RY45_04570 IPR036365 RY45_04570 RY45_04570 IPR036366 RY45_04570 RY45_04570 IPR036505 RY45_04570 RY45_04575 IPR009921 Domain of unknown function DUF1456 RY45_04580 IPR001789 Signal transduction response regulator, receiver domain RY45_04580 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_04580 IPR003660 HAMP linker domain RY45_04580 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_04580 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_04580 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_04580 IPR011006 CheY-like superfamily RY45_04580 IPR019247 Histidine kinase BarA, N-terminal RY45_04580 IPR036097 RY45_04580 RY45_04580 IPR036641 RY45_04580 RY45_04580 IPR036890 RY45_04580 RY45_04585 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD RY45_04585 IPR002792 TRAM domain RY45_04585 IPR010280 (Uracil-5)-methyltransferase family RY45_04585 IPR012340 Nucleic acid-binding, OB-fold RY45_04585 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_04585 IPR030390 RY45_04585 RY45_04585 IPR030391 RY45_04585 RY45_04590 IPR002912 ACT domain RY45_04590 IPR003607 HD/PDEase domain RY45_04590 IPR004095 TGS RY45_04590 IPR004811 RelA/SpoT family RY45_04590 IPR007685 RelA/SpoT RY45_04590 IPR012675 Beta-grasp domain RY45_04590 IPR012676 TGS-like RY45_04595 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RY45_04595 IPR011551 NTP pyrophosphohydrolase MazG, bacterial RY45_04600 IPR004468 CTP synthase RY45_04600 IPR017456 CTP synthase, N-terminal RY45_04600 IPR017926 Glutamine amidotransferase RY45_04600 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04600 IPR029062 Class I glutamine amidotransferase-like RY45_04605 IPR000941 Enolase RY45_04605 IPR020809 Enolase, conserved site RY45_04605 IPR020810 Enolase, C-terminal RY45_04605 IPR020811 Enolase, N-terminal RY45_04605 IPR029017 Enolase N-terminal domain-like RY45_04605 IPR036849 RY45_04605 RY45_04610 IPR007060 Septum formation initiator FtsL/DivIC RY45_04610 IPR023081 Cell division protein FtsB RY45_04615 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RY45_04615 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site RY45_04615 IPR029044 Nucleotide-diphospho-sugar transferases RY45_04615 IPR034683 RY45_04615 RY45_04620 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase RY45_04620 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site RY45_04620 IPR036571 RY45_04620 RY45_04625 IPR001656 Pseudouridine synthase, TruD RY45_04625 IPR020103 Pseudouridine synthase, catalytic domain RY45_04625 IPR020119 Pseudouridine synthase TruD, conserved site RY45_04630 IPR002828 Survival protein SurE-like phosphatase/nucleotidase RY45_04630 IPR030048 RY45_04630 RY45_04630 IPR036523 RY45_04630 RY45_04635 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase RY45_04635 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_04640 IPR032816 RY45_04640 RY45_04645 IPR011055 Duplicated hybrid motif RY45_04645 IPR016047 Peptidase M23 RY45_04645 IPR018392 LysM domain RY45_04645 IPR036779 RY45_04645 RY45_04650 IPR000943 RNA polymerase sigma-70 RY45_04650 IPR007624 RNA polymerase sigma-70 region 3 RY45_04650 IPR007627 RNA polymerase sigma-70 region 2 RY45_04650 IPR007630 RNA polymerase sigma-70 region 4 RY45_04650 IPR009042 RNA polymerase sigma-70 region 1.2 RY45_04650 IPR012761 RNA polymerase sigma factor RpoS RY45_04650 IPR013324 RNA polymerase sigma factor, region 3/4 RY45_04650 IPR013325 RNA polymerase sigma factor, region 2 RY45_04650 IPR014284 RNA polymerase sigma-70 like domain RY45_04650 IPR036388 RY45_04650 RY45_04655 IPR000905 Gcp-like domain RY45_04655 IPR017860 Peptidase M22, conserved site RY45_04655 IPR017861 Kae1/YgjD family RY45_04655 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD RY45_04660 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related RY45_04660 IPR019004 Uncharacterised domain YOR215C, mitochondrial RY45_04660 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RY45_04665 IPR002694 Zinc finger, CHC2-type RY45_04665 IPR006171 Toprim domain RY45_04665 IPR006295 DNA primase, DnaG RY45_04665 IPR013173 DNA primase DnaG, DnaB-binding domain RY45_04665 IPR013264 DNA primase, catalytic core, N-terminal RY45_04665 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RY45_04665 IPR019475 DNA primase, DnaB-helicase binding domain RY45_04665 IPR030846 RY45_04665 RY45_04665 IPR036977 RY45_04665 RY45_04665 IPR037068 RY45_04665 RY45_04670 IPR000943 RNA polymerase sigma-70 RY45_04670 IPR007127 RNA polymerase sigma factor 70, region 1.1 RY45_04670 IPR007624 RNA polymerase sigma-70 region 3 RY45_04670 IPR007627 RNA polymerase sigma-70 region 2 RY45_04670 IPR007630 RNA polymerase sigma-70 region 4 RY45_04670 IPR007631 RNA polymerase sigma factor 70, non-essential domain RY45_04670 IPR009042 RNA polymerase sigma-70 region 1.2 RY45_04670 IPR012760 RNA polymerase sigma factor RpoD, C-terminal RY45_04670 IPR013324 RNA polymerase sigma factor, region 3/4 RY45_04670 IPR013325 RNA polymerase sigma factor, region 2 RY45_04670 IPR014284 RNA polymerase sigma-70 like domain RY45_04670 IPR028630 RNA polymerase sigma factor RpoD RY45_04670 IPR036388 RY45_04670 RY45_04685 IPR000601 PKD domain RY45_04685 IPR006046 Alpha amylase RY45_04685 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_04685 IPR006048 Alpha-amylase, C-terminal all beta RY45_04685 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_04685 IPR013783 Immunoglobulin-like fold RY45_04685 IPR017853 Glycoside hydrolase, superfamily RY45_04685 IPR022409 PKD/Chitinase domain RY45_04685 IPR031319 RY45_04685 RY45_04685 IPR035986 RY45_04685 RY45_04690 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase RY45_04690 IPR016174 Di-haem cytochrome, transmembrane RY45_04695 IPR009155 Cytochrome b562 RY45_04695 IPR010980 Cytochrome c/b562 RY45_04700 IPR000115 Phosphoribosylglycinamide synthetase RY45_04700 IPR011054 Rudiment single hybrid motif RY45_04700 IPR013815 ATP-grasp fold, subdomain 1 RY45_04700 IPR016185 Pre-ATP-grasp domain RY45_04700 IPR020559 Phosphoribosylglycinamide synthetase, conserved site RY45_04700 IPR020560 Phosphoribosylglycinamide synthetase, C-domain RY45_04700 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RY45_04700 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal RY45_04700 IPR037123 RY45_04700 RY45_04705 IPR002695 AICARFT/IMPCHase bienzyme RY45_04705 IPR011607 Methylglyoxal synthase-like domain RY45_04705 IPR016193 Cytidine deaminase-like RY45_04705 IPR024051 AICAR transformylase domain RY45_04705 IPR036914 RY45_04705 RY45_04710 IPR000551 MerR-type HTH domain RY45_04710 IPR009061 DNA binding domain, putative RY45_04710 IPR011788 Zn(II)-responsive transcriptional regulator RY45_04710 IPR015358 Transcription regulator MerR, DNA binding RY45_04715 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal RY45_04715 IPR024072 Dihydrofolate reductase-like domain RY45_04720 IPR005589 Protein of unknown function DUF331 RY45_04725 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related RY45_04725 IPR006638 Elongator protein 3/MiaB/NifB RY45_04725 IPR007197 Radical SAM RY45_04725 IPR010723 HemN, C-terminal domain RY45_04725 IPR023404 Radical SAM, alpha/beta horseshoe RY45_04730 IPR002637 Ham1-like protein RY45_04730 IPR020922 Non-canonical purine NTP pyrophosphatase RY45_04730 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_04735 IPR004812 Drug resistance transporter Bcr/CmlA subfamily RY45_04735 IPR005829 Sugar transporter, conserved site RY45_04735 IPR011701 Major facilitator superfamily RY45_04735 IPR036259 RY45_04735 RY45_04740 IPR000683 Oxidoreductase, N-terminal RY45_04740 IPR004104 Oxidoreductase, C-terminal RY45_04740 IPR036291 RY45_04740 RY45_04750 IPR000182 GNAT domain RY45_04750 IPR016181 Acyl-CoA N-acyltransferase RY45_04755 IPR000182 GNAT domain RY45_04755 IPR016181 Acyl-CoA N-acyltransferase RY45_04760 IPR001570 Peptidase M4, C-terminal RY45_04760 IPR007280 Peptidase, C-terminal, archaeal/bacterial RY45_04760 IPR011096 FTP domain RY45_04760 IPR013856 Peptidase M4 domain RY45_04760 IPR023612 Peptidase M4 RY45_04760 IPR025711 PepSY domain RY45_04760 IPR027268 RY45_04760 RY45_04765 IPR000847 Transcription regulator HTH, LysR RY45_04765 IPR005119 LysR, substrate-binding RY45_04765 IPR036388 RY45_04765 RY45_04765 IPR036390 RY45_04765 RY45_04770 IPR011701 Major facilitator superfamily RY45_04770 IPR022855 Multidrug resistance protein MdtH RY45_04770 IPR036259 RY45_04770 RY45_04775 IPR001702 Porin, Gram-negative type RY45_04775 IPR001897 Porin, gammaproteobacterial RY45_04775 IPR023614 Porin domain RY45_04780 IPR004668 Anaerobic c4-dicarboxylate membrane transporter RY45_04785 IPR000362 Fumarate lyase family RY45_04785 IPR004708 Aspartate ammonia-lyase RY45_04785 IPR008948 L-Aspartase-like RY45_04785 IPR018951 Fumarase C, C-terminal RY45_04785 IPR020557 Fumarate lyase, conserved site RY45_04785 IPR022761 Fumarate lyase, N-terminal RY45_04785 IPR024083 Fumarase/histidase, N-terminal RY45_04790 IPR007313 FxsA cytoplasmic membrane protein RY45_04795 IPR002528 Multi antimicrobial extrusion protein RY45_04800 IPR011032 GroES (chaperonin 10)-like RY45_04800 IPR018369 Chaperonin Cpn10, conserved site RY45_04800 IPR020818 Chaperonin Cpn10 RY45_04800 IPR037124 RY45_04800 RY45_04805 IPR001844 Chaperonin Cpn60 RY45_04805 IPR002423 Chaperonin Cpn60/TCP-1 RY45_04805 IPR018370 Chaperonin Cpn60, conserved site RY45_04805 IPR027409 GroEL-like apical domain RY45_04805 IPR027410 TCP-1-like chaperonin intermediate domain RY45_04805 IPR027413 GroEL-like equatorial domain RY45_04810 IPR036374 RY45_04810 RY45_04815 IPR000160 GGDEF domain RY45_04815 IPR001633 EAL domain RY45_04815 IPR029787 Nucleotide cyclase RY45_04815 IPR035919 RY45_04815 RY45_04820 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_04820 IPR006225 Pseudouridine synthase, RluC/RluD RY45_04820 IPR020103 Pseudouridine synthase, catalytic domain RY45_04825 IPR000330 SNF2-related RY45_04825 IPR001650 Helicase, C-terminal RY45_04825 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_04825 IPR022737 RNA polymerase recycling, bacterial, C-terminal RY45_04825 IPR023949 RNA polymerase-associated protein RapA RY45_04825 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04825 IPR038718 RY45_04825 RY45_04860 IPR000788 Ribonucleotide reductase large subunit, C-terminal RY45_04860 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent RY45_04870 IPR002716 PIN domain RY45_04870 IPR003714 PhoH-like protein RY45_04870 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04870 IPR029060 PIN domain-like RY45_04875 IPR003439 ABC transporter-like RY45_04875 IPR003593 AAA+ ATPase domain RY45_04875 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ RY45_04875 IPR017871 ABC transporter, conserved site RY45_04875 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04880 IPR000515 MetI-like domain RY45_04880 IPR005947 Thiamine ABC transporter, permease protein RY45_04880 IPR035906 RY45_04880 RY45_04885 IPR005948 Thiamine ABC transporter periplasmic binding protein RY45_04885 IPR005967 Proteobacterial thiamine ABC transporter, periplasmic binding protein RY45_04885 IPR006059 Bacterial extracellular solute-binding, family 1 RY45_04890 IPR009875 PilZ domain RY45_04900 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel RY45_04900 IPR004431 3-isopropylmalate dehydratase, small subunit RY45_04900 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RY45_04905 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha RY45_04905 IPR004430 3-isopropylmalate dehydratase, large subunit RY45_04905 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 RY45_04905 IPR018136 Aconitase family, 4Fe-4S cluster binding site RY45_04905 IPR036008 RY45_04905 RY45_04910 IPR004429 Isopropylmalate dehydrogenase RY45_04910 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site RY45_04910 IPR024084 Isopropylmalate dehydrogenase-like domain RY45_04915 IPR000891 Pyruvate carboxyltransferase RY45_04915 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site RY45_04915 IPR005671 2-isopropylmalate synthase, bacterial-type RY45_04915 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain RY45_04915 IPR013785 Aldolase-type TIM barrel RY45_04915 IPR036230 RY45_04915 RY45_04920 IPR001647 DNA-binding HTH domain, TetR-type RY45_04920 IPR009057 Homeodomain-like RY45_04920 IPR036271 RY45_04920 RY45_04925 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_04925 IPR036938 RY45_04925 RY45_04930 IPR005262 Conserved hypothetical protein CHP00661 RY45_04935 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RY45_04935 IPR012000 Thiamine pyrophosphate enzyme, central domain RY45_04935 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RY45_04935 IPR012846 Acetolactate synthase, large subunit, biosynthetic RY45_04935 IPR029035 DHS-like NAD/FAD-binding domain RY45_04935 IPR029061 Thiamin diphosphate-binding fold RY45_04940 IPR004789 Acetolactate synthase, small subunit RY45_04940 IPR019455 Acetolactate synthase, small subunit, C-terminal RY45_04940 IPR027271 RY45_04940 RY45_04945 IPR002505 Phosphate acetyl/butaryl transferase RY45_04945 IPR004614 Phosphate acetyltransferase RY45_04945 IPR010766 DRTGG RY45_04945 IPR016475 Phosphate acetyltransferase, bacteria RY45_04945 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04945 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain like RY45_04950 IPR000890 Aliphatic acid kinase, short-chain RY45_04950 IPR004372 Acetate/Proprionate kinase RY45_04950 IPR023865 Aliphatic acid kinase, short-chain, conserved site RY45_04955 IPR007334 Uncharacterised protein family UPF0208 RY45_04960 IPR005587 Uncharacterised protein family UPF0304, YfbU RY45_04960 IPR023145 YfbU, helix-hairpin domain RY45_04960 IPR023146 YfbU, alpha-helical bundle domain RY45_04965 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RY45_04965 IPR024706 Peroxiredoxin, AhpC-type RY45_04965 IPR036249 RY45_04965 RY45_04970 IPR016867 Glycine cleavage repressor GcvR RY45_04975 IPR002220 DapA-like RY45_04975 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA RY45_04975 IPR013785 Aldolase-type TIM barrel RY45_04975 IPR020624 Dihydrodipicolinate synthetase, conserved site RY45_04975 IPR020625 Dihydrodipicolinate synthetase, active site RY45_04980 IPR010653 Lipoprotein, NlpB RY45_04980 IPR014524 Outer membrane protein assembly factor BamC RY45_04985 IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type RY45_04985 IPR028923 SAICAR synthetase/ADE2, N-terminal RY45_04990 IPR002347 Glucose/ribitol dehydrogenase RY45_04990 IPR036291 RY45_04990 RY45_04995 IPR000847 Transcription regulator HTH, LysR RY45_04995 IPR005119 LysR, substrate-binding RY45_04995 IPR036388 RY45_04995 RY45_04995 IPR036390 RY45_04995 RY45_05000 IPR018635 Uncharacterised protein family UPF0319 RY45_05005 IPR001310 Histidine triad (HIT) protein RY45_05005 IPR026026 Histidine triad hydrolase, Hint-type RY45_05005 IPR036265 RY45_05005 RY45_05010 IPR024513 Protein of unknown function DUF3334 RY45_05010 IPR028976 CheC-like domain RY45_05015 IPR016896 Protein of unknown function DUF2860 RY45_05020 IPR000014 PAS domain RY45_05020 IPR001789 Signal transduction response regulator, receiver domain RY45_05020 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_05020 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_05020 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_05020 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_05020 IPR011006 CheY-like superfamily RY45_05020 IPR013656 PAS fold-4 RY45_05020 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB RY45_05020 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain RY45_05020 IPR035965 RY45_05020 RY45_05020 IPR036097 RY45_05020 RY45_05020 IPR036641 RY45_05020 RY45_05020 IPR036890 RY45_05020 RY45_05025 IPR003607 HD/PDEase domain RY45_05025 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase RY45_05025 IPR006674 HD domain RY45_05025 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain RY45_05025 IPR026875 Phosphohydrolase-associated domain RY45_05025 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain RY45_05035 IPR000014 PAS domain RY45_05035 IPR001638 Extracellular solute-binding protein, family 3 RY45_05035 IPR001789 Signal transduction response regulator, receiver domain RY45_05035 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_05035 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_05035 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_05035 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_05035 IPR011006 CheY-like superfamily RY45_05035 IPR013656 PAS fold-4 RY45_05035 IPR035965 RY45_05035 RY45_05035 IPR036097 RY45_05035 RY45_05035 IPR036641 RY45_05035 RY45_05035 IPR036890 RY45_05035 RY45_05040 IPR001633 EAL domain RY45_05040 IPR001789 Signal transduction response regulator, receiver domain RY45_05040 IPR011006 CheY-like superfamily RY45_05040 IPR035919 RY45_05040 RY45_05045 IPR003660 HAMP linker domain RY45_05045 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05050 IPR006645 NusG, N-terminal RY45_05050 IPR010215 Transcription antitermination protein RfaH RY45_05050 IPR036735 RY45_05050 RY45_05055 IPR004872 Lipoprotein NlpA family RY45_05060 IPR000515 MetI-like domain RY45_05060 IPR035906 RY45_05060 RY45_05065 IPR003439 ABC transporter-like RY45_05065 IPR003593 AAA+ ATPase domain RY45_05065 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria RY45_05065 IPR017871 ABC transporter, conserved site RY45_05065 IPR018449 NIL domain RY45_05065 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05075 IPR012347 Ferritin-related RY45_05080 IPR000600 ROK RY45_05085 IPR004453 Epoxyqueuosine reductase QueG RY45_05085 IPR013542 Domain of unknown function DUF1730 RY45_05085 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_05090 IPR000631 YjeF C-terminal domain RY45_05090 IPR004443 YjeF N-terminal domain RY45_05090 IPR029056 Ribokinase-like RY45_05090 IPR030677 RY45_05090 RY45_05090 IPR036652 RY45_05090 RY45_05095 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE RY45_05095 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05100 IPR002508 Cell wall hydrolase/autolysin, catalytic RY45_05100 IPR018392 LysM domain RY45_05100 IPR021731 AMIN domain RY45_05100 IPR036779 RY45_05100 RY45_05105 IPR002099 DNA mismatch repair protein family RY45_05105 IPR013507 DNA mismatch repair protein, C-terminal RY45_05105 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_05105 IPR014762 DNA mismatch repair, conserved site RY45_05105 IPR014790 MutL, C-terminal, dimerisation RY45_05105 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_05105 IPR020667 DNA mismatch repair protein, MutL RY45_05105 IPR036890 RY45_05105 RY45_05105 IPR037198 RY45_05105 RY45_05110 IPR018022 tRNA delta(2)-isopentenylpyrophosphate transferase RY45_05110 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05115 IPR005001 Host factor Hfq RY45_05115 IPR010920 Like-Sm (LSM) domain RY45_05120 IPR006073 GTP binding domain RY45_05120 IPR016496 GTPase HflX RY45_05120 IPR025121 GTPase HflX N-terminal domain RY45_05120 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05120 IPR032305 RY45_05120 RY45_05120 IPR035647 RY45_05120 RY45_05125 IPR001107 Band 7 protein RY45_05125 IPR001972 Stomatin family RY45_05125 IPR010201 HflK RY45_05125 IPR020980 Menbrane protein HflK, N-terminal RY45_05125 IPR036013 RY45_05125 RY45_05130 IPR001107 Band 7 protein RY45_05130 IPR010200 HflC RY45_05130 IPR036013 RY45_05130 RY45_05135 IPR019201 Protein of unknown function DUF2065 RY45_05140 IPR000092 Polyprenyl synthetase RY45_05140 IPR008949 Terpenoid synthase RY45_05140 IPR033749 RY45_05140 RY45_05150 IPR001684 Ribosomal protein L27 RY45_05150 IPR018261 Ribosomal protein L27, conserved site RY45_05155 IPR006073 GTP binding domain RY45_05155 IPR006074 GTP1/OBG, conserved site RY45_05155 IPR006169 GTP1/OBG domain RY45_05155 IPR014100 GTP-binding protein Obg/CgtA RY45_05155 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05155 IPR035101 RY45_05155 RY45_05155 IPR036726 RY45_05155 RY45_05160 IPR011642 Nucleoside recognition Gate RY45_05165 IPR000873 AMP-dependent synthetase/ligase RY45_05165 IPR020845 AMP-binding, conserved site RY45_05165 IPR025110 AMP-binding enzyme C-terminal domain RY45_05180 IPR003607 HD/PDEase domain RY45_05180 IPR029016 GAF domain-like RY45_05185 IPR011251 Luciferase-like domain RY45_05185 IPR019949 Luciferase family oxidoreductase, group 1 RY45_05185 IPR036661 RY45_05185 RY45_05190 IPR001387 Cro/C1-type helix-turn-helix domain RY45_05190 IPR010982 Lambda repressor-like, DNA-binding domain RY45_05190 IPR025698 2TM domain RY45_05200 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) RY45_05200 IPR004843 Calcineurin-like phosphoesterase domain, apaH type RY45_05200 IPR029052 Metallo-dependent phosphatase-like RY45_05205 IPR007474 ApaG domain RY45_05205 IPR036767 RY45_05205 RY45_05210 IPR001737 Ribosomal RNA adenine methylase transferase RY45_05210 IPR011530 Ribosomal RNA adenine dimethylase RY45_05210 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site RY45_05210 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal RY45_05210 IPR023165 rRNA adenine dimethylase-like RY45_05210 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_05215 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA RY45_05215 IPR037510 RY45_05215 RY45_05220 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type RY45_05220 IPR015391 SurA N-terminal RY45_05220 IPR023034 Peptidyl-prolyl isomerase SurA RY45_05220 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site RY45_05220 IPR027304 Trigger factor/SurA domain RY45_05225 IPR005653 Organic solvent tolerance-like, N-terminal RY45_05225 IPR007543 Organic solvent tolerance protein, C-terminal RY45_05225 IPR020889 Lipopolysaccharide assembly, LptD RY45_05230 IPR002575 Aminoglycoside phosphotransferase RY45_05230 IPR011009 Protein kinase-like domain RY45_05235 IPR005835 Nucleotidyl transferase RY45_05235 IPR029044 Nucleotide-diphospho-sugar transferases RY45_05240 IPR001623 DnaJ domain RY45_05240 IPR007791 Heat shock protein DnaJ-like protein DjlA RY45_05240 IPR023749 DnaJ-like protein DjlA RY45_05240 IPR029024 TerB-like RY45_05240 IPR036869 RY45_05240 RY45_05245 IPR006043 Xanthine/uracil/vitamin C permease RY45_05245 IPR026033 Purine permease PbuG-like RY45_05255 IPR003439 ABC transporter-like RY45_05255 IPR003593 AAA+ ATPase domain RY45_05255 IPR017871 ABC transporter, conserved site RY45_05255 IPR022374 ABC transporter, ATP-binding protein, ChvD RY45_05255 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05255 IPR032781 RY45_05255 RY45_05260 IPR000595 Cyclic nucleotide-binding domain RY45_05260 IPR014710 RmlC-like jelly roll fold RY45_05260 IPR018490 Cyclic nucleotide-binding-like RY45_05265 IPR019629 Uncharacterised protein family HI1736/YgjV RY45_05265 IPR026267 Inner membrane protein YgjV RY45_05270 IPR000845 Nucleoside phosphorylase domain RY45_05270 IPR035994 RY45_05270 RY45_05275 IPR008258 Lytic transglycosylase-like SLT domain RY45_05275 IPR011990 Tetratricopeptide-like helical domain RY45_05275 IPR023346 Lysozyme-like domain RY45_05280 IPR008160 Collagen triple helix repeat RY45_05290 IPR000847 Transcription regulator HTH, LysR RY45_05290 IPR005119 LysR, substrate-binding RY45_05290 IPR036388 RY45_05290 RY45_05290 IPR036390 RY45_05290 RY45_05295 IPR000845 Nucleoside phosphorylase domain RY45_05295 IPR010943 Xanthosine phosphorylase RY45_05295 IPR011268 Purine nucleoside phosphorylase RY45_05295 IPR018099 Purine phosphorylase, family 2, conserved site RY45_05295 IPR035994 RY45_05295 RY45_05300 IPR002668 Concentrative nucleoside transporter N-terminal domain RY45_05300 IPR011642 Nucleoside recognition Gate RY45_05300 IPR011657 Concentrative nucleoside transporter C-terminal domain RY45_05300 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial RY45_05305 IPR002915 DeoC/FbaB/ lacD aldolase RY45_05305 IPR011343 Deoxyribose-phosphate aldolase RY45_05305 IPR013785 Aldolase-type TIM barrel RY45_05310 IPR000620 Drug/metabolite transporter RY45_05315 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain RY45_05315 IPR036291 RY45_05315 RY45_05320 IPR003740 Membrane Protein of unknown function DUF161 RY45_05325 IPR003439 ABC transporter-like RY45_05325 IPR003593 AAA+ ATPase domain RY45_05325 IPR017871 ABC transporter, conserved site RY45_05325 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05330 IPR000522 ABC transporter, permease protein RY45_05330 IPR037294 RY45_05330 RY45_05335 IPR002491 ABC transporter periplasmic binding domain RY45_05340 IPR010413 Heme utilization carrier protein HutX like RY45_05345 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain RY45_05345 IPR012349 FMN-binding split barrel RY45_05345 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain RY45_05355 IPR000868 Isochorismatase-like RY45_05355 IPR036380 RY45_05355 RY45_05360 IPR007314 Domain of unknown function DUF399 RY45_05365 IPR000531 TonB-dependent receptor, beta-barrel RY45_05365 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor RY45_05365 IPR011276 TonB-dependent haem/haemoglobin receptor RY45_05365 IPR012910 TonB-dependent receptor, plug RY45_05365 IPR036942 RY45_05365 RY45_05365 IPR037066 RY45_05365 RY45_05370 IPR024989 Major facilitator superfamily associated domain RY45_05370 IPR026032 Phenylproprionate/maltose permease RY45_05370 IPR036259 RY45_05370 RY45_05375 IPR001387 Cro/C1-type helix-turn-helix domain RY45_05375 IPR010982 Lambda repressor-like, DNA-binding domain RY45_05380 IPR021354 Protein of unknown function DUF2975 RY45_05385 IPR001789 Signal transduction response regulator, receiver domain RY45_05385 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_05385 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_05385 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_05385 IPR011006 CheY-like superfamily RY45_05385 IPR035965 RY45_05385 RY45_05385 IPR036097 RY45_05385 RY45_05385 IPR036890 RY45_05385 RY45_05390 IPR001223 Glycoside hydrolase, family 18, catalytic domain RY45_05390 IPR001579 Glycoside hydrolase, chitinase active site RY45_05390 IPR003610 Carbohydrate-binding module family 5/12 RY45_05390 IPR011583 Chitinase II RY45_05390 IPR013540 Chitinase A N-terminal RY45_05390 IPR013783 Immunoglobulin-like fold RY45_05390 IPR014756 Immunoglobulin E-set RY45_05390 IPR017853 Glycoside hydrolase, superfamily RY45_05390 IPR022409 PKD/Chitinase domain RY45_05390 IPR029070 Chitinase insertion domain RY45_05390 IPR036573 RY45_05390 RY45_05395 IPR019503 Peptidase M66 RY45_05400 IPR000726 Glycoside hydrolase, family 19, catalytic RY45_05400 IPR003610 Carbohydrate-binding module family 5/12 RY45_05400 IPR013783 Immunoglobulin-like fold RY45_05400 IPR022409 PKD/Chitinase domain RY45_05400 IPR023346 Lysozyme-like domain RY45_05400 IPR035986 RY45_05400 RY45_05400 IPR036573 RY45_05400 RY45_05405 IPR013216 Methyltransferase type 11 RY45_05405 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted RY45_05405 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_05410 IPR000595 Cyclic nucleotide-binding domain RY45_05410 IPR012318 Helix-turn-helix motif, Crp-type RY45_05410 IPR014710 RmlC-like jelly roll fold RY45_05410 IPR018335 Transcription regulator HTH, Crp-type, conserved site RY45_05410 IPR018488 Cyclic nucleotide-binding, conserved site RY45_05410 IPR018490 Cyclic nucleotide-binding-like RY45_05410 IPR036388 RY45_05410 RY45_05410 IPR036390 RY45_05410 RY45_05415 IPR003718 OsmC/Ohr family RY45_05415 IPR015946 K homology domain-like, alpha/beta RY45_05415 IPR036102 RY45_05415 RY45_05420 IPR018660 C-type lysozyme, inhibitor RY45_05420 IPR036328 RY45_05420 RY45_05425 IPR025411 Domain of unknown function DUF4136 RY45_05430 IPR006082 Phosphoribulokinase RY45_05430 IPR006083 Phosphoribulokinase/uridine kinase RY45_05430 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05435 IPR000390 Small multidrug resistance protein family RY45_05435 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF RY45_05440 IPR000620 Drug/metabolite transporter RY45_05440 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE RY45_05445 IPR003342 Glycosyl transferase, family 39 RY45_05445 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase RY45_05450 IPR002509 Polysaccharide deacetylase RY45_05450 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel RY45_05450 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable RY45_05455 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain RY45_05455 IPR002376 Formyl transferase, N-terminal RY45_05455 IPR005793 Formyl transferase, C-terminal RY45_05455 IPR011034 Formyl transferase, C-terminal-like RY45_05455 IPR021168 Bifunctional polymyxin resistance protein, ArnA RY45_05455 IPR036291 RY45_05455 RY45_05455 IPR036477 RY45_05455 RY45_05460 IPR001173 Glycosyltransferase 2-like RY45_05460 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase RY45_05460 IPR029044 Nucleotide-diphospho-sugar transferases RY45_05465 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RY45_05465 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_05465 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_05465 IPR015424 Pyridoxal phosphate-dependent transferase RY45_05465 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB RY45_05470 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal RY45_05470 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_05470 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation RY45_05470 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal RY45_05470 IPR017476 UDP-glucose/GDP-mannose dehydrogenase RY45_05470 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type RY45_05470 IPR036220 RY45_05470 RY45_05470 IPR036291 RY45_05470 RY45_05475 IPR010648 Uncharacterised protein family UPF0270 RY45_05475 IPR036685 RY45_05475 RY45_05480 IPR000160 GGDEF domain RY45_05480 IPR029787 Nucleotide cyclase RY45_05480 IPR033444 RY45_05480 RY45_05485 IPR000073 Alpha/beta hydrolase fold-1 RY45_05485 IPR012020 AB-hydrolase YheT, putative RY45_05485 IPR029058 Alpha/Beta hydrolase fold RY45_05490 IPR001789 Signal transduction response regulator, receiver domain RY45_05490 IPR002545 CheW-like protein RY45_05490 IPR011006 CheY-like superfamily RY45_05490 IPR024181 Chemotaxis response regulator CheV RY45_05490 IPR036061 RY45_05490 RY45_05500 IPR012658 Conserved hypothetical protein CHP02443 RY45_05505 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain RY45_05510 IPR007236 SlyX RY45_05515 IPR001680 WD40 repeat RY45_05515 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily RY45_05515 IPR015943 WD40/YVTN repeat-like-containing domain RY45_05515 IPR019775 WD40 repeat, conserved site RY45_05520 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal RY45_05520 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain RY45_05520 IPR036944 RY45_05520 RY45_05525 IPR001789 Signal transduction response regulator, receiver domain RY45_05525 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_05525 IPR002197 DNA binding HTH domain, Fis-type RY45_05525 IPR003593 AAA+ ATPase domain RY45_05525 IPR009057 Homeodomain-like RY45_05525 IPR011006 CheY-like superfamily RY45_05525 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_05525 IPR025944 Sigma-54 interaction domain, conserved site RY45_05525 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05530 IPR011990 Tetratricopeptide-like helical domain RY45_05540 IPR021339 Protein of unknown function DUF2956 RY45_05545 IPR004843 Calcineurin-like phosphoesterase domain, apaH type RY45_05545 IPR006179 5'-Nucleotidase/apyrase RY45_05545 IPR008334 5'-Nucleotidase, C-terminal RY45_05545 IPR029052 Metallo-dependent phosphatase-like RY45_05545 IPR036907 RY45_05545 RY45_05550 IPR001633 EAL domain RY45_05550 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain RY45_05550 IPR035919 RY45_05550 RY45_05555 IPR007379 Tim44-like domain RY45_05555 IPR032710 RY45_05555 RY45_05560 IPR003593 AAA+ ATPase domain RY45_05560 IPR007692 DNA helicase, DnaB type RY45_05560 IPR007693 DNA helicase, DnaB-like, N-terminal RY45_05560 IPR007694 DNA helicase, DnaB-like, C-terminal RY45_05560 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RY45_05560 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05560 IPR036185 RY45_05560 RY45_05565 IPR000821 Alanine racemase RY45_05565 IPR001608 Alanine racemase, N-terminal RY45_05565 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RY45_05565 IPR011079 Alanine racemase, C-terminal RY45_05565 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site RY45_05565 IPR029066 PLP-binding barrel RY45_05570 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_05570 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_05575 IPR001539 Peptidase U32 RY45_05575 IPR032525 RY45_05575 RY45_05580 IPR001633 EAL domain RY45_05580 IPR035919 RY45_05580 RY45_05585 IPR008962 PapD-like RY45_05585 IPR013783 Immunoglobulin-like fold RY45_05590 IPR007540 Fimbrial major subunit, CS1-type RY45_05595 IPR031917 RY45_05595 RY45_05595 IPR032636 RY45_05595 RY45_05600 IPR000792 Transcription regulator LuxR, C-terminal RY45_05600 IPR001789 Signal transduction response regulator, receiver domain RY45_05600 IPR011006 CheY-like superfamily RY45_05600 IPR016032 Signal transduction response regulator, C-terminal effector RY45_05605 IPR001638 Extracellular solute-binding protein, family 3 RY45_05605 IPR001789 Signal transduction response regulator, receiver domain RY45_05605 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_05605 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_05605 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_05605 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_05605 IPR011006 CheY-like superfamily RY45_05605 IPR036097 RY45_05605 RY45_05605 IPR036641 RY45_05605 RY45_05605 IPR036890 RY45_05605 RY45_05630 IPR000192 Aminotransferase class V domain RY45_05630 IPR011340 Cysteine desulfurase-related RY45_05630 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_05630 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_05630 IPR015424 Pyridoxal phosphate-dependent transferase RY45_05635 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase RY45_05635 IPR001789 Signal transduction response regulator, receiver domain RY45_05635 IPR008248 Signal transduction response regulator, chemotaxis, CheB RY45_05635 IPR011006 CheY-like superfamily RY45_05635 IPR035909 RY45_05635 RY45_05640 IPR005659 Chemoreceptor glutamine deamidase CheD RY45_05640 IPR011324 Cytotoxic necrotizing factor-like, catalytic RY45_05640 IPR038592 RY45_05640 RY45_05645 IPR000780 MCP methyltransferase, CheR-type RY45_05645 IPR022641 MCP methyltransferase, CheR-type, all-alpha domain, N-terminal RY45_05645 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RY45_05645 IPR026024 Chemotaxis protein methyltransferase CheR RY45_05645 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_05645 IPR036804 RY45_05645 RY45_05650 IPR000014 PAS domain RY45_05650 IPR003660 HAMP linker domain RY45_05650 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05650 IPR035965 RY45_05650 RY45_05655 IPR002545 CheW-like protein RY45_05655 IPR036061 RY45_05655 RY45_05660 IPR003660 HAMP linker domain RY45_05660 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05660 IPR024478 4HB MCP domain RY45_05665 IPR002545 CheW-like protein RY45_05665 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_05665 IPR004105 Histidine kinase CheA-like, homodimeric domain RY45_05665 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_05665 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_05665 IPR036061 RY45_05665 RY45_05665 IPR036097 RY45_05665 RY45_05665 IPR036641 RY45_05665 RY45_05665 IPR036890 RY45_05665 RY45_05665 IPR037006 RY45_05665 RY45_05670 IPR002645 STAS domain RY45_05670 IPR003658 Anti-sigma factor antagonist RY45_05670 IPR036513 RY45_05670 RY45_05675 IPR001789 Signal transduction response regulator, receiver domain RY45_05675 IPR011006 CheY-like superfamily RY45_05680 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05685 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 RY45_05685 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal RY45_05685 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RY45_05685 IPR016039 Thiolase-like RY45_05690 IPR000847 Transcription regulator HTH, LysR RY45_05690 IPR005119 LysR, substrate-binding RY45_05690 IPR036388 RY45_05690 RY45_05690 IPR036390 RY45_05690 RY45_05695 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_05700 IPR001539 Peptidase U32 RY45_05700 IPR020988 Peptidase U32, collagenase RY45_05710 IPR010696 Protein of unknown function DUF1272 RY45_05715 IPR011051 RmlC-like cupin domain RY45_05715 IPR014710 RmlC-like jelly roll fold RY45_05720 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site RY45_05720 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain RY45_05720 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding RY45_05720 IPR023546 Methylated-DNA--protein-cysteine methyltransferase RY45_05720 IPR036217 RY45_05720 RY45_05720 IPR036388 RY45_05720 RY45_05720 IPR036631 RY45_05720 RY45_05725 IPR003265 HhH-GPD domain RY45_05725 IPR004026 Ada DNA repair, metal-binding RY45_05725 IPR009057 Homeodomain-like RY45_05725 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RY45_05725 IPR011257 DNA glycosylase RY45_05725 IPR018060 DNA binding HTH domain, AraC-type RY45_05725 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RY45_05725 IPR035451 RY45_05725 RY45_05725 IPR037046 RY45_05725 RY45_05730 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_05735 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase RY45_05740 IPR002625 Smr protein/MutS2 C-terminal RY45_05740 IPR036063 RY45_05740 RY45_05745 IPR002816 Pheromone shutdown, TraB RY45_05750 IPR014347 Tautomerase/MIF superfamily RY45_05750 IPR015017 Protein of unknown function DUF1904 RY45_05755 IPR002347 Glucose/ribitol dehydrogenase RY45_05755 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_05755 IPR036291 RY45_05755 RY45_05760 IPR005318 Outer membrane porin, bacterial RY45_05760 IPR023614 Porin domain RY45_05765 IPR003660 HAMP linker domain RY45_05765 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_05770 IPR000620 Drug/metabolite transporter RY45_05775 IPR001303 Class II aldolase/adducin N-terminal RY45_05775 IPR036409 RY45_05775 RY45_05780 IPR001670 Alcohol dehydrogenase, iron-type RY45_05780 IPR018211 Alcohol dehydrogenase, iron-type, conserved site RY45_05795 IPR013449 Rhamnulokinase RY45_05795 IPR018484 Carbohydrate kinase, FGGY, N-terminal RY45_05795 IPR018485 Carbohydrate kinase, FGGY, C-terminal RY45_05800 IPR009308 Rhamnose isomerase RY45_05800 IPR036237 RY45_05800 RY45_05805 IPR004673 L-rhamnose-proton symport, RhaT RY45_05810 IPR008000 Rhamnose mutarotase RY45_05810 IPR011008 Dimeric alpha-beta barrel RY45_05810 IPR013448 L-rhamnose 1-epimerase RY45_05820 IPR032370 RY45_05820 RY45_05820 IPR032386 RY45_05820 RY45_05820 IPR032388 RY45_05820 RY45_05820 IPR038165 RY45_05820 RY45_05820 IPR038180 RY45_05820 RY45_05825 IPR014549 Uncharacterised conserved integral membrane protein RY45_05830 IPR007293 Protein of unknown function UCP028687 RY45_05830 IPR024952 Lipoprotein LPP20-like RY45_05835 IPR001086 Prephenate dehydratase RY45_05835 IPR002701 Chorismate mutase RY45_05835 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase RY45_05835 IPR010952 Chorismate mutase, gammaproteobacteria RY45_05835 IPR018528 Prephenate dehydratase, conserved site RY45_05835 IPR036263 RY45_05835 RY45_05835 IPR036979 RY45_05835 RY45_05840 IPR006439 HAD hydrolase, subfamily IA RY45_05840 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_05840 IPR023214 HAD-like domain RY45_05840 IPR036412 RY45_05840 RY45_05850 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_05855 IPR021501 Protein of unknown function DUF3157 RY45_05865 IPR007553 Domain of unknown function DUF523 RY45_05865 IPR013560 Domain of unknown function DUF1722 RY45_05865 IPR017087 Uncharacterised conserved protein UCP037004 RY45_05870 IPR000551 MerR-type HTH domain RY45_05870 IPR009061 DNA binding domain, putative RY45_05875 IPR002081 Cryptochrome/DNA photolyase, class 1 RY45_05875 IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal RY45_05875 IPR006050 DNA photolyase, N-terminal RY45_05875 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_05875 IPR018394 Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal RY45_05875 IPR036134 RY45_05875 RY45_05875 IPR036155 RY45_05875 RY45_05880 IPR032710 RY45_05880 RY45_05880 IPR037401 RY45_05880 RY45_05885 IPR002347 Glucose/ribitol dehydrogenase RY45_05885 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_05885 IPR036291 RY45_05885 RY45_05890 IPR002937 Amine oxidase RY45_05890 IPR036188 RY45_05890 RY45_05895 IPR010775 Protein of unknown function DUF1365 RY45_05900 IPR003333 Mycolic acid cyclopropane synthase RY45_05900 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_05905 IPR021306 Protein of unknown function DUF2878 RY45_05910 IPR012663 Conserved hypothetical protein CHP02450, tryptophan-rich RY45_05915 IPR016087 Chalcone isomerase RY45_05920 IPR024409 Protein of unknown function DUF3833 RY45_05925 IPR002177 DNA-binding protein Dps RY45_05925 IPR008331 Ferritin/DPS protein domain RY45_05925 IPR009078 Ferritin-like superfamily RY45_05925 IPR012347 Ferritin-related RY45_05925 IPR023188 DNA-binding protein Dps, conserved site RY45_05930 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase RY45_05930 IPR010048 Hydroxylamine reductase RY45_05930 IPR011254 Prismane-like RY45_05930 IPR016099 Prismane-like, alpha/beta-sandwich RY45_05930 IPR016100 Prismane, alpha-bundle RY45_05935 IPR001041 2Fe-2S ferredoxin-type domain RY45_05935 IPR001433 Oxidoreductase FAD/NAD(P)-binding RY45_05935 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RY45_05935 IPR001834 NADH:cytochrome b5 reductase (CBR) RY45_05935 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RY45_05935 IPR008333 Oxidoreductase, FAD-binding domain RY45_05935 IPR012675 Beta-grasp domain RY45_05935 IPR017938 Riboflavin synthase-like beta-barrel RY45_05935 IPR036010 RY45_05935 RY45_05935 IPR039261 RY45_05935 RY45_05940 IPR005886 UDP-glucose 4-epimerase GalE RY45_05940 IPR016040 NAD(P)-binding domain RY45_05940 IPR036291 RY45_05940 RY45_05945 IPR012336 Thioredoxin-like fold RY45_05945 IPR036249 RY45_05945 RY45_05955 IPR005565 Haemolysin activator HlyB RY45_05955 IPR013686 Polypeptide-transport-associated, ShlB-type RY45_05955 IPR027282 Two partner secretion pathway transporter RY45_05955 IPR035251 RY45_05955 RY45_05960 IPR008619 Filamentous haemagglutinin repeat RY45_05960 IPR008638 Filamentous haemagglutinin, N-terminal RY45_05960 IPR011050 Pectin lyase fold/virulence factor RY45_05960 IPR012334 Pectin lyase fold RY45_05965 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 IPR011050 Pectin lyase fold/virulence factor RY45_05970 IPR006915 Domain of unknown function DUF637, haemagglutinin putative RY45_05970 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05970 IPR025157 Haemagluttinin repeat RY45_06005 IPR000792 Transcription regulator LuxR, C-terminal RY45_06005 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RY45_06005 IPR016032 Signal transduction response regulator, C-terminal effector RY45_06005 IPR036388 RY45_06005 RY45_06005 IPR036693 RY45_06005 RY45_06010 IPR008514 Type VI secretion system effector, Hcp RY45_06010 IPR036624 RY45_06010 RY45_06015 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RY45_06015 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RY45_06015 IPR037026 RY45_06015 RY45_06020 IPR025391 Domain of unknown function DUF4123 RY45_06040 IPR000847 Transcription regulator HTH, LysR RY45_06040 IPR005119 LysR, substrate-binding RY45_06040 IPR036388 RY45_06040 RY45_06040 IPR036390 RY45_06040 RY45_06045 IPR005128 Alpha-acetolactate decarboxylase RY45_06050 IPR000399 TPP-binding enzyme, conserved site RY45_06050 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RY45_06050 IPR012000 Thiamine pyrophosphate enzyme, central domain RY45_06050 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RY45_06050 IPR012782 Acetolactate synthase, catabolic RY45_06050 IPR029035 DHS-like NAD/FAD-binding domain RY45_06050 IPR029061 Thiamin diphosphate-binding fold RY45_06055 IPR002818 ThiJ/PfpI RY45_06055 IPR006287 DJ-1 RY45_06055 IPR029062 Class I glutamine amidotransferase-like RY45_06060 IPR003710 Ketopantoate reductase ApbA/PanE RY45_06060 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_06060 IPR013328 Dehydrogenase, multihelical RY45_06060 IPR013332 Ketopantoate reductase, N-terminal domain RY45_06060 IPR013752 Ketopantoate reductase, C-terminal domain RY45_06060 IPR036291 RY45_06060 RY45_06065 IPR007551 Protein of unknown function DUF520 RY45_06065 IPR035570 RY45_06065 RY45_06065 IPR035571 RY45_06065 RY45_06065 IPR036183 RY45_06065 RY45_06070 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like RY45_06070 IPR036777 RY45_06070 RY45_06075 IPR024371 Acetyl-coenzyme A transporter 1 RY45_06075 IPR036259 RY45_06075 RY45_06085 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain RY45_06085 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site RY45_06085 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase RY45_06085 IPR029000 Cyclophilin-like domain RY45_06090 IPR005619 Uncharacterised protein family, YajG RY45_06095 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_06095 IPR007848 Methyltransferase small domain RY45_06095 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD RY45_06095 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_06100 IPR002634 BolA protein RY45_06100 IPR036065 RY45_06100 RY45_06105 IPR008703 NADH-quinone reductase, Na(+)-translocating, subunit A RY45_06105 IPR022615 NADH-quinone reductase, Na(+)-translocating, subunit A, C-terminal RY45_06110 IPR004338 NADH-quinone reductase NQR2/RnfD RY45_06110 IPR010966 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit RY45_06115 IPR007329 FMN-binding RY45_06115 IPR010204 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit RY45_06120 IPR003667 Electron transport complex, Rnf/Nqr RY45_06120 IPR011292 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit RY45_06125 IPR003667 Electron transport complex, Rnf/Nqr RY45_06125 IPR010967 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit RY45_06130 IPR001041 2Fe-2S ferredoxin-type domain RY45_06130 IPR001433 Oxidoreductase FAD/NAD(P)-binding RY45_06130 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RY45_06130 IPR008333 Oxidoreductase, FAD-binding domain RY45_06130 IPR010205 NADH-quinone reductase, Na(+)-translocating, F subunit RY45_06130 IPR012675 Beta-grasp domain RY45_06130 IPR017938 Riboflavin synthase-like beta-barrel RY45_06130 IPR036010 RY45_06130 RY45_06130 IPR039261 RY45_06130 RY45_06135 IPR003374 ApbE-like domain RY45_06135 IPR024932 Flavin transferase ApbE RY45_06140 IPR007495 Protein of unknown function DUF539 RY45_06150 IPR001126 DNA-repair protein, UmuC-like RY45_06150 IPR017961 DNA polymerase, Y-family, little finger domain RY45_06150 IPR022880 DNA polymerase IV RY45_06150 IPR024728 DNA polymerase type-Y, HhH motif RY45_06150 IPR036775 RY45_06150 RY45_06155 IPR003660 HAMP linker domain RY45_06155 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_06155 IPR004090 Chemotaxis methyl-accepting receptor RY45_06155 IPR033479 RY45_06155 RY45_06160 IPR000847 Transcription regulator HTH, LysR RY45_06160 IPR005119 LysR, substrate-binding RY45_06160 IPR036388 RY45_06160 RY45_06160 IPR036390 RY45_06160 RY45_06165 IPR000073 Alpha/beta hydrolase fold-1 RY45_06165 IPR029058 Alpha/Beta hydrolase fold RY45_06170 IPR006696 Protein of unknown function DUF423 RY45_06175 IPR002877 Ribosomal RNA methyltransferase FtsJ domain RY45_06175 IPR011224 Ribosomal RNA large subunit methyltransferase M RY45_06175 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_06185 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site RY45_06185 IPR024084 Isopropylmalate dehydrogenase-like domain RY45_06190 IPR002421 5'-3' exonuclease, N-terminal RY45_06190 IPR008918 Helix-hairpin-helix motif, class 2 RY45_06190 IPR020045 5'-3' exonuclease, C-terminal domain RY45_06190 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal RY45_06190 IPR022895 Flap endonuclease Xni RY45_06190 IPR029060 PIN domain-like RY45_06190 IPR036279 RY45_06190 RY45_06195 IPR021826 Protein of unknown function DUF3412 RY45_06195 IPR027820 Domain of unknown function DUF4478 RY45_06195 IPR031100 RY45_06195 RY45_06195 IPR037153 RY45_06195 RY45_06200 IPR000160 GGDEF domain RY45_06200 IPR029787 Nucleotide cyclase RY45_06205 IPR011990 Tetratricopeptide-like helical domain RY45_06205 IPR019734 Tetratricopeptide repeat RY45_06210 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 RY45_06210 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal RY45_06210 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF RY45_06215 IPR009948 Syd RY45_06215 IPR038228 RY45_06215 RY45_06220 IPR016908 Uncharacterised conserved protein UCP029037 RY45_06230 IPR021250 Protein of unknown function DUF2789 RY45_06235 IPR021732 Protein of unknown function DUF3301 RY45_06240 IPR021936 Protein of unknown function DUF3549 RY45_06245 IPR007384 Protein of unknown function UCP006257 RY45_06245 IPR023376 YqcC-like domain RY45_06245 IPR036814 RY45_06245 RY45_06250 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_06250 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RY45_06250 IPR020103 Pseudouridine synthase, catalytic domain RY45_06255 IPR001094 Flavodoxin RY45_06255 IPR008254 Flavodoxin/nitric oxide synthase RY45_06255 IPR029039 Flavoprotein-like RY45_06260 IPR003192 Porin, LamB type RY45_06260 IPR023738 Maltoporin RY45_06260 IPR036998 RY45_06260 RY45_06265 IPR010794 Maltose operon periplasmic RY45_06270 IPR001996 Phosphotransferase system, IIB component, type 1 RY45_06270 IPR003352 Phosphotransferase system, EIIC RY45_06270 IPR011299 PTS system glucose-specific IIBC component RY45_06270 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site RY45_06270 IPR036878 RY45_06270 RY45_06275 IPR020911 Uncharacterised protein family UPF0325 RY45_06280 IPR001451 Bacterial transferase hexapeptide repeat RY45_06280 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family RY45_06280 IPR011004 Trimeric LpxA-like RY45_06280 IPR018357 Hexapeptide transferase, conserved site RY45_06280 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 RY45_06280 IPR037133 RY45_06280 RY45_06285 IPR002934 Nucleotidyl transferase domain RY45_06285 IPR003607 HD/PDEase domain RY45_06285 IPR006674 HD domain RY45_06285 IPR010043 Protein-PII uridylyltransferase RY45_06285 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase RY45_06290 IPR000994 Peptidase M24, structural domain RY45_06290 IPR001714 Peptidase M24, methionine aminopeptidase RY45_06290 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 RY45_06290 IPR036005 RY45_06290 RY45_06295 IPR001865 Ribosomal protein S2 RY45_06295 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid RY45_06295 IPR018130 Ribosomal protein S2, conserved site RY45_06295 IPR023591 Ribosomal protein S2, flavodoxin-like domain RY45_06300 IPR001816 Translation elongation factor EFTs/EF1B RY45_06300 IPR009060 UBA-like RY45_06300 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation RY45_06300 IPR018101 Translation elongation factor Ts, conserved site RY45_06300 IPR036402 RY45_06300 RY45_06305 IPR001048 Aspartate/glutamate/uridylate kinase RY45_06305 IPR011817 Uridylate kinase RY45_06305 IPR015963 Uridylate kinase, bacteria RY45_06305 IPR036393 RY45_06305 RY45_06310 IPR002661 Ribosome recycling factor RY45_06310 IPR023584 Ribosome recycling factor domain RY45_06310 IPR036191 RY45_06310 RY45_06315 IPR001441 Decaprenyl diphosphate synthase-like RY45_06315 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site RY45_06315 IPR036424 RY45_06315 RY45_06320 IPR000374 Phosphatidate cytidylyltransferase RY45_06325 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase RY45_06325 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal RY45_06325 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal RY45_06325 IPR026877 DXP reductoisomerase C-terminal domain RY45_06325 IPR036169 RY45_06325 RY45_06325 IPR036291 RY45_06325 RY45_06330 IPR001478 PDZ domain RY45_06330 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase RY45_06330 IPR008915 Peptidase M50 RY45_06330 IPR036034 RY45_06330 RY45_06335 IPR000184 Bacterial surface antigen (D15) RY45_06335 IPR010827 Surface antigen variable number RY45_06335 IPR023707 Outer membrane protein assembly factor BamA RY45_06340 IPR005632 Chaperone protein Skp RY45_06340 IPR024930 Skp domain RY45_06345 IPR001451 Bacterial transferase hexapeptide repeat RY45_06345 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase RY45_06345 IPR011004 Trimeric LpxA-like RY45_06345 IPR018357 Hexapeptide transferase, conserved site RY45_06345 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region RY45_06350 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ RY45_06350 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ RY45_06350 IPR029069 HotDog domain RY45_06355 IPR001451 Bacterial transferase hexapeptide repeat RY45_06355 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase RY45_06355 IPR011004 Trimeric LpxA-like RY45_06355 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal RY45_06355 IPR037157 RY45_06355 RY45_06360 IPR003835 Glycosyl transferase, family 19 RY45_06365 IPR012337 Ribonuclease H-like domain RY45_06365 IPR022898 Ribonuclease HII RY45_06365 IPR024567 Ribonuclease HII/HIII domain RY45_06365 IPR036397 RY45_06365 RY45_06370 IPR003141 Polymerase/histidinol phosphatase, N-terminal RY45_06370 IPR004013 PHP, C-terminal RY45_06370 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type RY45_06370 IPR004805 DNA polymerase III, alpha subunit RY45_06370 IPR011708 Bacterial DNA polymerase III, alpha subunit RY45_06370 IPR016195 Polymerase/histidinol phosphatase-like RY45_06370 IPR029460 DNA polymerase, helix-hairpin-helix motif RY45_06375 IPR001095 Acetyl-CoA carboxylase, alpha subunit RY45_06375 IPR029045 ClpP/crotonase-like domain RY45_06380 IPR001867 Signal transduction response regulator, C-terminal RY45_06380 IPR016032 Signal transduction response regulator, C-terminal effector RY45_06380 IPR036388 RY45_06380 RY45_06385 IPR002293 Amino acid/polyamine transporter I RY45_06390 IPR000310 Orn/Lys/Arg decarboxylase, major domain RY45_06390 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal RY45_06390 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal RY45_06390 IPR011193 Ornithine/lysine/arginine decarboxylase RY45_06390 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_06390 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_06390 IPR015424 Pyridoxal phosphate-dependent transferase RY45_06390 IPR036633 RY45_06390 RY45_06395 IPR004625 Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase RY45_06395 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase RY45_06395 IPR023685 Pyridoxal kinase PdxY RY45_06395 IPR029056 Ribokinase-like RY45_06400 IPR002528 Multi antimicrobial extrusion protein RY45_06405 IPR000847 Transcription regulator HTH, LysR RY45_06405 IPR005119 LysR, substrate-binding RY45_06405 IPR036388 RY45_06405 RY45_06405 IPR036390 RY45_06405 RY45_06410 IPR004694 Hydroxy amino acid transporter RY45_06410 IPR018227 Tryptophan/tyrosine permease RY45_06415 IPR001279 Beta-lactamase-like RY45_06415 IPR036866 RY45_06415 RY45_06420 IPR000847 Transcription regulator HTH, LysR RY45_06420 IPR005119 LysR, substrate-binding RY45_06420 IPR036388 RY45_06420 RY45_06420 IPR036390 RY45_06420 RY45_06425 IPR000073 Alpha/beta hydrolase fold-1 RY45_06425 IPR029058 Alpha/Beta hydrolase fold RY45_06430 IPR002925 Dienelactone hydrolase RY45_06430 IPR020610 Thiolase, active site RY45_06430 IPR029058 Alpha/Beta hydrolase fold RY45_06435 IPR000847 Transcription regulator HTH, LysR RY45_06435 IPR005119 LysR, substrate-binding RY45_06435 IPR036388 RY45_06435 RY45_06435 IPR036390 RY45_06435 RY45_06440 IPR002293 Amino acid/polyamine transporter I RY45_06445 IPR000182 GNAT domain RY45_06445 IPR016181 Acyl-CoA N-acyltransferase RY45_06450 IPR003439 ABC transporter-like RY45_06450 IPR003593 AAA+ ATPase domain RY45_06450 IPR017871 ABC transporter, conserved site RY45_06450 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06455 IPR031948 RY45_06455 RY45_06455 IPR038643 RY45_06455 RY45_06460 IPR008753 Peptidase M13, N-terminal domain RY45_06460 IPR018497 Peptidase M13, C-terminal domain RY45_06460 IPR024079 Metallopeptidase, catalytic domain RY45_06465 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase RY45_06465 IPR012094 Lysidine-tRNA(Ile) synthetase RY45_06465 IPR012795 Lysidine-tRNA(Ile) synthetase, N-terminal RY45_06465 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal RY45_06465 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_06465 IPR015262 Lysidine-tRNA(Ile) synthetase, substrate-binding domain RY45_06470 IPR000160 GGDEF domain RY45_06470 IPR029787 Nucleotide cyclase RY45_06480 IPR002641 Patatin/Phospholipase A2-related RY45_06480 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_06485 IPR022742 Putative lysophospholipase RY45_06485 IPR029058 Alpha/Beta hydrolase fold RY45_06490 IPR001647 DNA-binding HTH domain, TetR-type RY45_06490 IPR009057 Homeodomain-like RY45_06490 IPR036271 RY45_06490 RY45_06495 IPR000792 Transcription regulator LuxR, C-terminal RY45_06495 IPR001789 Signal transduction response regulator, receiver domain RY45_06495 IPR011006 CheY-like superfamily RY45_06495 IPR016032 Signal transduction response regulator, C-terminal effector RY45_06495 IPR036388 RY45_06495 RY45_06500 IPR004045 Glutathione S-transferase, N-terminal RY45_06500 IPR036249 RY45_06500 RY45_06500 IPR036282 RY45_06500 RY45_06505 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_06505 IPR014635 Alpha-amylase, MalS type RY45_06505 IPR017853 Glycoside hydrolase, superfamily RY45_06515 IPR007267 GtrA-like protein RY45_06520 IPR001173 Glycosyltransferase 2-like RY45_06520 IPR029044 Nucleotide-diphospho-sugar transferases RY45_06530 IPR001638 Extracellular solute-binding protein, family 3 RY45_06535 IPR002477 Peptidoglycan binding-like RY45_06535 IPR005490 L,D-transpeptidase catalytic domain RY45_06535 IPR036365 RY45_06535 RY45_06535 IPR038063 RY45_06535 RY45_06540 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RY45_06540 IPR010275 Protein of unknown function DUF882 RY45_06550 IPR005115 Uncharacterised domain UPF0126 RY45_06555 IPR022985 CysZ, gammaproteobacteria RY45_06565 IPR007449 ZipA, C-terminal FtsZ-binding domain RY45_06565 IPR011919 Cell division protein ZipA RY45_06565 IPR036765 RY45_06565 RY45_06570 IPR001357 BRCT domain RY45_06570 IPR001679 NAD-dependent DNA ligase RY45_06570 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 RY45_06570 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type RY45_06570 IPR004150 NAD-dependent DNA ligase, OB-fold RY45_06570 IPR010994 RuvA domain 2-like RY45_06570 IPR012340 Nucleic acid-binding, OB-fold RY45_06570 IPR013839 NAD-dependent DNA ligase, adenylation RY45_06570 IPR013840 NAD-dependent DNA ligase, N-terminal RY45_06570 IPR018239 NAD-dependent DNA ligase, active site RY45_06570 IPR033136 RY45_06570 RY45_06570 IPR036420 RY45_06570 RY45_06575 IPR007487 ABC transporter, substrate-binding protein RY45_06580 IPR005144 ATP-cone RY45_06580 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic RY45_06580 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RY45_06585 IPR001989 Radical-activating enzyme, conserved site RY45_06585 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic RY45_06585 IPR013785 Aldolase-type TIM barrel RY45_06590 IPR000612 Proteolipid membrane potential modulator RY45_06595 IPR037682 RY45_06595 RY45_06600 IPR018660 C-type lysozyme, inhibitor RY45_06600 IPR036328 RY45_06600 RY45_06605 IPR001638 Extracellular solute-binding protein, family 3 RY45_06610 IPR016926 Uncharacterised conserved protein UCP029594 RY45_06610 IPR022604 Protein of unknown function DUF2955 RY45_06615 IPR039562 RY45_06615 RY45_06620 IPR000835 MarR-type HTH domain RY45_06620 IPR023187 Transcriptional regulator MarR-type, conserved site RY45_06620 IPR036388 RY45_06620 RY45_06620 IPR036390 RY45_06620 RY45_06625 IPR004679 2-hydroxycarboxylate transporter RY45_06630 IPR001891 Malic oxidoreductase RY45_06630 IPR012301 Malic enzyme, N-terminal domain RY45_06630 IPR012302 Malic enzyme, NAD-binding RY45_06630 IPR036291 RY45_06630 RY45_06630 IPR037062 RY45_06630 RY45_06635 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_06635 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_06635 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB RY45_06635 IPR029151 Periplasmic sensor domain-like RY45_06635 IPR033463 RY45_06635 RY45_06635 IPR035965 RY45_06635 RY45_06635 IPR036890 RY45_06635 RY45_06635 IPR039506 RY45_06635 RY45_06640 IPR001789 Signal transduction response regulator, receiver domain RY45_06640 IPR011006 CheY-like superfamily RY45_06640 IPR024187 Signal transduction response regulator, citrate/malate metabolism RY45_06640 IPR028141 Transcriptional regulator RY45_06645 IPR000620 Drug/metabolite transporter RY45_06650 IPR003313 AraC-type arabinose-binding/dimerisation domain RY45_06650 IPR009057 Homeodomain-like RY45_06650 IPR011051 RmlC-like cupin domain RY45_06650 IPR014710 RmlC-like jelly roll fold RY45_06650 IPR018060 DNA binding HTH domain, AraC-type RY45_06650 IPR018062 HTH domain AraC-type, conserved site RY45_06650 IPR020449 Transcription regulator HTH, AraC- type RY45_06655 IPR015590 Aldehyde dehydrogenase domain RY45_06655 IPR016160 Aldehyde dehydrogenase, cysteine active site RY45_06655 IPR016161 Aldehyde/histidinol dehydrogenase RY45_06655 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_06655 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_06655 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RY45_06660 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_06660 IPR002197 DNA binding HTH domain, Fis-type RY45_06660 IPR003018 GAF domain RY45_06660 IPR003593 AAA+ ATPase domain RY45_06660 IPR009057 Homeodomain-like RY45_06660 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_06660 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_06660 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06660 IPR029016 GAF domain-like RY45_06665 IPR006089 Acyl-CoA dehydrogenase, conserved site RY45_06665 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RY45_06665 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RY45_06665 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain RY45_06665 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RY45_06665 IPR036250 RY45_06665 RY45_06665 IPR037069 RY45_06665 RY45_06670 IPR003673 CoA-transferase family III RY45_06670 IPR023606 CoA-transferase family III domain RY45_06675 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_06675 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_06680 IPR001789 Signal transduction response regulator, receiver domain RY45_06680 IPR001867 Signal transduction response regulator, C-terminal RY45_06680 IPR011006 CheY-like superfamily RY45_06680 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB RY45_06680 IPR016032 Signal transduction response regulator, C-terminal effector RY45_06680 IPR036388 RY45_06680 RY45_06685 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_06685 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_06685 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_06685 IPR013767 PAS fold RY45_06685 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR RY45_06685 IPR021766 Protein of unknown function DUF3329 RY45_06685 IPR035965 RY45_06685 RY45_06685 IPR036097 RY45_06685 RY45_06685 IPR036890 RY45_06685 RY45_06690 IPR011862 Phosphate binding protein RY45_06690 IPR024370 PBP domain RY45_06695 IPR001915 Peptidase M48 RY45_06700 IPR000182 GNAT domain RY45_06700 IPR016181 Acyl-CoA N-acyltransferase RY45_06705 IPR000600 ROK RY45_06710 IPR005627 Copper homeostasis protein CutC RY45_06710 IPR023648 Copper homeostasis CutC domain RY45_06710 IPR036822 RY45_06710 RY45_06720 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal RY45_06720 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain RY45_06720 IPR036944 RY45_06720 RY45_06725 IPR003439 ABC transporter-like RY45_06725 IPR003593 AAA+ ATPase domain RY45_06725 IPR017871 ABC transporter, conserved site RY45_06725 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06730 IPR013525 ABC-2 type transporter RY45_06735 IPR021268 Protein of unknown function DUF2845 RY45_06740 IPR001638 Extracellular solute-binding protein, family 3 RY45_06740 IPR018313 Extracellular solute-binding protein, family 3, conserved site RY45_06745 IPR000515 MetI-like domain RY45_06745 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_06745 IPR035906 RY45_06745 RY45_06750 IPR000515 MetI-like domain RY45_06750 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_06750 IPR035906 RY45_06750 RY45_06755 IPR003439 ABC transporter-like RY45_06755 IPR003593 AAA+ ATPase domain RY45_06755 IPR017871 ABC transporter, conserved site RY45_06755 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06755 IPR030679 RY45_06755 RY45_06760 IPR009491 Protein of unknown function DUF1107 RY45_06765 IPR000086 NUDIX hydrolase domain RY45_06765 IPR015797 NUDIX hydrolase domain-like RY45_06765 IPR024195 NUDIX hydrolase, YfcD, predicted RY45_06775 IPR013740 Redoxin RY45_06775 IPR036249 RY45_06775 RY45_06780 IPR004481 Sodium/potassium/calcium exchanger RY45_06780 IPR004837 Sodium/calcium exchanger membrane region RY45_06785 IPR000183 Ornithine/DAP/Arg decarboxylase RY45_06785 IPR002433 Ornithine decarboxylase RY45_06785 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RY45_06785 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal RY45_06785 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal RY45_06785 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site RY45_06785 IPR029066 PLP-binding barrel RY45_06790 IPR001463 Sodium:alanine symporter RY45_06795 IPR005565 Haemolysin activator HlyB RY45_06795 IPR013686 Polypeptide-transport-associated, ShlB-type RY45_06795 IPR027282 Two partner secretion pathway transporter RY45_06795 IPR035251 RY45_06795 RY45_06805 IPR006915 Domain of unknown function DUF637, haemagglutinin putative RY45_06805 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 IPR011050 Pectin lyase fold/virulence factor RY45_06805 IPR025157 Haemagluttinin repeat RY45_06820 IPR006042 Xanthine/uracil permease RY45_06820 IPR006043 Xanthine/uracil/vitamin C permease RY45_06820 IPR017588 Xanthine permease RY45_06825 IPR000160 GGDEF domain RY45_06825 IPR029787 Nucleotide cyclase RY45_06830 IPR019633 Protein of unknown function DUF2498 RY45_06830 IPR038191 RY45_06830 RY45_06835 IPR002528 Multi antimicrobial extrusion protein RY45_06840 IPR009057 Homeodomain-like RY45_06840 IPR018060 DNA binding HTH domain, AraC-type RY45_06840 IPR037923 RY45_06840 RY45_06845 IPR001891 Malic oxidoreductase RY45_06845 IPR012301 Malic enzyme, N-terminal domain RY45_06845 IPR012302 Malic enzyme, NAD-binding RY45_06845 IPR015884 Malic enzyme, conserved site RY45_06845 IPR023667 NAD-dependent malic enzyme, proteobacteria RY45_06845 IPR036291 RY45_06845 RY45_06845 IPR037062 RY45_06845 RY45_06850 IPR000498 Outer membrane protein, OmpA-like, transmembrane domain RY45_06850 IPR002368 Outer membrane protein, OmpA RY45_06850 IPR006664 Outer membrane protein, bacterial RY45_06850 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_06850 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel RY45_06850 IPR036737 RY45_06850 RY45_06855 IPR000498 Outer membrane protein, OmpA-like, transmembrane domain RY45_06855 IPR006664 Outer membrane protein, bacterial RY45_06855 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_06855 IPR006690 Outer membrane protein, OmpA-like, conserved site RY45_06855 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel RY45_06855 IPR036737 RY45_06855 RY45_06860 IPR000498 Outer membrane protein, OmpA-like, transmembrane domain RY45_06860 IPR006664 Outer membrane protein, bacterial RY45_06860 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_06860 IPR006690 Outer membrane protein, OmpA-like, conserved site RY45_06860 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel RY45_06860 IPR036737 RY45_06860 RY45_06870 IPR001387 Cro/C1-type helix-turn-helix domain RY45_06870 IPR010982 Lambda repressor-like, DNA-binding domain RY45_06875 IPR000175 Sodium:neurotransmitter symporter RY45_06875 IPR037272 RY45_06875 RY45_06880 IPR002641 Patatin/Phospholipase A2-related RY45_06880 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_06885 IPR000160 GGDEF domain RY45_06885 IPR029151 Periplasmic sensor domain-like RY45_06885 IPR029787 Nucleotide cyclase RY45_06885 IPR033479 RY45_06885 RY45_06890 IPR006143 RND efflux pump, membrane fusion protein RY45_06890 IPR032317 RY45_06890 RY45_06895 IPR001036 Acriflavin resistance protein RY45_06895 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_06905 IPR006638 Elongator protein 3/MiaB/NifB RY45_06905 IPR007197 Radical SAM RY45_06905 IPR013704 Uncharacterised protein family UPF0313, N-terminal RY45_06905 IPR020612 Methylthiotransferase, conserved site RY45_06905 IPR022946 Uncharacterised protein family UPF0313 RY45_06905 IPR023404 Radical SAM, alpha/beta horseshoe RY45_06905 IPR024560 Uncharacterised protein family UPF0313, C-terminal RY45_06920 IPR007837 DNA damage-inducible protein DinB RY45_06920 IPR034660 RY45_06920 RY45_06925 IPR000683 Oxidoreductase, N-terminal RY45_06925 IPR036291 RY45_06925 RY45_06935 IPR002176 Crossover junction endodeoxyribonuclease RuvC RY45_06935 IPR012337 Ribonuclease H-like domain RY45_06935 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site RY45_06935 IPR036397 RY45_06935 RY45_06940 IPR000425 Major intrinsic protein RY45_06940 IPR022357 Major intrinsic protein, conserved site RY45_06940 IPR023271 Aquaporin-like RY45_06940 IPR023743 Aquaporin Z RY45_06945 IPR008258 Lytic transglycosylase-like SLT domain RY45_06945 IPR023346 Lysozyme-like domain RY45_06950 IPR006046 Alpha amylase RY45_06950 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_06950 IPR017853 Glycoside hydrolase, superfamily RY45_06955 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase RY45_06955 IPR011055 Duplicated hybrid motif RY45_06955 IPR016047 Peptidase M23 RY45_06960 IPR000182 GNAT domain RY45_06960 IPR016181 Acyl-CoA N-acyltransferase RY45_06965 IPR010835 Protein of unknown function DUF1439 RY45_06970 IPR001736 Phospholipase D/Transphosphatidylase RY45_06970 IPR022924 Cardiolipin synthase RY45_06970 IPR025202 Phospholipase D-like domain RY45_06970 IPR030840 RY45_06970 RY45_06975 IPR010352 Protein of unknown function DUF945 RY45_06980 IPR002376 Formyl transferase, N-terminal RY45_06980 IPR002912 ACT domain RY45_06980 IPR004810 Formyltetrahydrofolate deformylase RY45_06980 IPR036477 RY45_06980 RY45_06985 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB RY45_06985 IPR017945 DHBP synthase RibB-like alpha/beta domain RY45_06990 IPR006817 Lipoprotein leucine-zipper RY45_06990 IPR016367 Murein-lipoprotein RY45_06995 IPR011990 Tetratricopeptide-like helical domain RY45_06995 IPR013766 Thioredoxin domain RY45_06995 IPR036249 RY45_06995 RY45_07000 IPR008278 4'-phosphopantetheinyl transferase superfamily RY45_07000 IPR037143 RY45_07000 RY45_07005 IPR000064 Endopeptidase, NLPC/P60 domain RY45_07005 IPR038765 RY45_07005 RY45_07010 IPR010286 Ribosomal RNA large subunit methyltransferase F-like RY45_07010 IPR016909 Ribosomal RNA large subunit methyltransferase F RY45_07010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_07015 IPR002539 MaoC-like domain RY45_07015 IPR029069 HotDog domain RY45_07020 IPR007433 Protein of unknown function DUF481 RY45_07025 IPR005490 L,D-transpeptidase catalytic domain RY45_07025 IPR038063 RY45_07025 RY45_07035 IPR000847 Transcription regulator HTH, LysR RY45_07035 IPR005119 LysR, substrate-binding RY45_07035 IPR036388 RY45_07035 RY45_07035 IPR036390 RY45_07035 RY45_07040 IPR003786 Protein FdhD RY45_07040 IPR016193 Cytidine deaminase-like RY45_07045 IPR006656 Molybdopterin oxidoreductase RY45_07045 IPR006657 Molydopterin dinucleotide-binding domain RY45_07045 IPR009010 Aspartate decarboxylase-like domain RY45_07045 IPR010046 Oxidoreductase alpha (molybdopterin) subunit RY45_07075 IPR009216 Virulence factor SrfB RY45_07080 IPR017030 Virulence effector, SrfC RY45_07090 IPR002035 von Willebrand factor, type A RY45_07090 IPR036465 RY45_07090 RY45_07095 IPR003439 ABC transporter-like RY45_07095 IPR003593 AAA+ ATPase domain RY45_07095 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07100 IPR003838 Permease FtsX-like RY45_07100 IPR025857 MacB-like periplasmic core domain RY45_07105 IPR005532 Formylglycine-generating sulphatase enzyme domain RY45_07105 IPR016187 C-type lectin fold RY45_07115 IPR001584 Integrase, catalytic core RY45_07115 IPR012337 Ribonuclease H-like domain RY45_07115 IPR025948 HTH-like domain RY45_07115 IPR036397 RY45_07115 RY45_07125 IPR003141 Polymerase/histidinol phosphatase, N-terminal RY45_07125 IPR016195 Polymerase/histidinol phosphatase-like RY45_07125 IPR023710 Probable phosphatase YcdX RY45_07130 IPR001647 DNA-binding HTH domain, TetR-type RY45_07130 IPR009057 Homeodomain-like RY45_07130 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_07130 IPR036271 RY45_07130 RY45_07135 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RY45_07135 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RY45_07135 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain RY45_07135 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RY45_07135 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type RY45_07135 IPR036250 RY45_07135 RY45_07135 IPR037069 RY45_07135 RY45_07140 IPR001036 Acriflavin resistance protein RY45_07140 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_07145 IPR006143 RND efflux pump, membrane fusion protein RY45_07145 IPR032317 RY45_07145 RY45_07150 IPR001697 Pyruvate kinase RY45_07150 IPR011037 Pyruvate kinase-like, insert domain RY45_07150 IPR015793 Pyruvate kinase, barrel RY45_07150 IPR015795 Pyruvate kinase, C-terminal RY45_07150 IPR015806 Pyruvate kinase, beta-barrel insert domain RY45_07150 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_07150 IPR018209 Pyruvate kinase, active site RY45_07150 IPR036918 RY45_07150 RY45_07155 IPR000281 Helix-turn-helix protein RpiR RY45_07155 IPR001347 Sugar isomerase (SIS) RY45_07155 IPR009057 Homeodomain-like RY45_07155 IPR036388 RY45_07155 RY45_07160 IPR003836 Glucokinase RY45_07165 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_07165 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_07165 IPR036890 RY45_07165 RY45_07170 IPR001789 Signal transduction response regulator, receiver domain RY45_07170 IPR001867 Signal transduction response regulator, C-terminal RY45_07170 IPR011006 CheY-like superfamily RY45_07170 IPR036388 RY45_07170 RY45_07175 IPR002792 TRAM domain RY45_07175 IPR005839 Methylthiotransferase RY45_07175 IPR005840 Ribosomal protein S12 methylthiotransferase RimO RY45_07175 IPR006638 Elongator protein 3/MiaB/NifB RY45_07175 IPR007197 Radical SAM RY45_07175 IPR013848 Methylthiotransferase, N-terminal RY45_07175 IPR020612 Methylthiotransferase, conserved site RY45_07175 IPR023404 Radical SAM, alpha/beta horseshoe RY45_07175 IPR038135 RY45_07175 RY45_07180 IPR003607 HD/PDEase domain RY45_07180 IPR006674 HD domain RY45_07180 IPR029016 GAF domain-like RY45_07190 IPR001624 Flagellar hook-basal body complex protein FliE RY45_07195 IPR000067 Flagellar M-ring protein FliF RY45_07195 IPR006182 Secretory protein YscJ/FliF RY45_07195 IPR013556 Flagellar M-ring C-terminal RY45_07200 IPR000090 Flagellar motor switch protein FliG RY45_07200 IPR011002 Flagellar motor switch protein FliG, alpha-helical RY45_07200 IPR023087 RY45_07200 RY45_07200 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RY45_07200 IPR032779 RY45_07200 RY45_07205 IPR000563 Flagellar assembly protein FliH RY45_07205 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RY45_07210 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RY45_07210 IPR003593 AAA+ ATPase domain RY45_07210 IPR005714 ATPase, type III secretion system, FliI/YscN RY45_07210 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RY45_07210 IPR020005 Flagellar export ATPase FliI, clade 1 RY45_07210 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07215 IPR012823 Flagellar export FliJ RY45_07220 IPR001635 Flagellar hook-length control protein FliK RY45_07220 IPR021136 Flagellar hook-length control protein-like, C-terminal RY45_07220 IPR038610 RY45_07220 RY45_07225 IPR005503 Flagellar basal body-associated protein FliL RY45_07230 IPR001543 Surface presentation of antigen (SpoA) RY45_07230 IPR001689 Flagellar motor switch protein FliM RY45_07230 IPR028976 CheC-like domain RY45_07230 IPR036429 RY45_07230 RY45_07235 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb RY45_07235 IPR001543 Surface presentation of antigen (SpoA) RY45_07235 IPR012826 Flagellar motor switch FliN RY45_07235 IPR036429 RY45_07235 RY45_07240 IPR022781 Flagellar biosynthesis protein, FliO RY45_07245 IPR005837 Flagellar transport protein FliP RY45_07245 IPR005838 Type III secretion system inner membrane P protein RY45_07250 IPR002191 Bacterial export protein family 3 RY45_07250 IPR006305 Flagellar biosynthesis protein FliQ RY45_07255 IPR002010 Type III secretion system inner membrane R protein RY45_07255 IPR006303 Flagellar biosynthesis protein FliR RY45_07260 IPR006135 Type III secretion system substrate exporter RY45_07260 IPR006136 Type III exporter system, flagellar biosynthetic protein FlhB RY45_07260 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_07265 IPR001712 Type III secretion system FHIPEP RY45_07265 IPR006301 Flagellar biosynthesis protein FlhA RY45_07265 IPR025505 FHIPEP conserved site RY45_07270 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain RY45_07270 IPR003593 AAA+ ATPase domain RY45_07270 IPR020006 Signal-recognition particle (SRP)-type GTPase RY45_07270 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07275 IPR025501 ATP binding protein MinD RY45_07275 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07275 IPR033756 RY45_07275 RY45_07280 IPR000943 RNA polymerase sigma-70 RY45_07280 IPR007624 RNA polymerase sigma-70 region 3 RY45_07280 IPR007627 RNA polymerase sigma-70 region 2 RY45_07280 IPR007630 RNA polymerase sigma-70 region 4 RY45_07280 IPR012845 RNA polymerase sigma factor, FliA/WhiG RY45_07280 IPR013324 RNA polymerase sigma factor, region 3/4 RY45_07280 IPR013325 RNA polymerase sigma factor, region 2 RY45_07280 IPR014284 RNA polymerase sigma-70 like domain RY45_07280 IPR028617 RNA polymerase sigma factor FliA RY45_07285 IPR001789 Signal transduction response regulator, receiver domain RY45_07285 IPR011006 CheY-like superfamily RY45_07290 IPR007439 Chemotaxis phosphatase, CheZ RY45_07295 IPR002545 CheW-like protein RY45_07295 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_07295 IPR004105 Histidine kinase CheA-like, homodimeric domain RY45_07295 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_07295 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_07295 IPR036061 RY45_07295 RY45_07295 IPR036097 RY45_07295 RY45_07295 IPR036641 RY45_07295 RY45_07295 IPR036890 RY45_07295 RY45_07295 IPR037006 RY45_07295 RY45_07300 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase RY45_07300 IPR001789 Signal transduction response regulator, receiver domain RY45_07300 IPR008248 Signal transduction response regulator, chemotaxis, CheB RY45_07300 IPR011006 CheY-like superfamily RY45_07300 IPR035909 RY45_07300 RY45_07305 IPR002898 MotA/TolQ/ExbB proton channel RY45_07310 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_07310 IPR025713 Motility protein B, N-terminal domain RY45_07310 IPR036737 RY45_07310 RY45_07315 IPR025669 AAA domain RY45_07315 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07320 IPR002545 CheW-like protein RY45_07320 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like RY45_07320 IPR036061 RY45_07320 RY45_07325 IPR002545 CheW-like protein RY45_07325 IPR036061 RY45_07325 RY45_07330 IPR021244 Protein of unknown function DUF2802 RY45_07335 IPR003439 ABC transporter-like RY45_07335 IPR003593 AAA+ ATPase domain RY45_07335 IPR005895 ABC transporter, haem export, CcmA RY45_07335 IPR017871 ABC transporter, conserved site RY45_07335 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07340 IPR003544 Cytochrome c-type biogenesis protein CcmB RY45_07340 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RY45_07345 IPR002541 Cytochrome c assembly protein RY45_07345 IPR003557 Cytochrome c-type biogenesis protein CcmC RY45_07350 IPR007078 Haem exporter protein D (CcmD) RY45_07355 IPR004329 CcmE/CycJ protein RY45_07355 IPR036127 RY45_07355 RY45_07360 IPR002541 Cytochrome c assembly protein RY45_07360 IPR003567 Cytochrome c-type biogenesis protein RY45_07360 IPR003568 Cytochrome c-type biogenesis protein CcmF RY45_07360 IPR032523 RY45_07360 RY45_07365 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE RY45_07365 IPR013740 Redoxin RY45_07365 IPR017937 Thioredoxin, conserved site RY45_07365 IPR036249 RY45_07365 RY45_07370 IPR005616 Cytochrome C biogenesis protein CcmH RY45_07370 IPR038297 RY45_07370 RY45_07375 IPR011990 Tetratricopeptide-like helical domain RY45_07375 IPR017560 Cytochrome c-type biogenesis protein CcmI RY45_07380 IPR007428 VacJ-like lipoprotein RY45_07385 IPR001189 Manganese/iron superoxide dismutase RY45_07385 IPR019831 Manganese/iron superoxide dismutase, N-terminal RY45_07385 IPR019832 Manganese/iron superoxide dismutase, C-terminal RY45_07385 IPR019833 Manganese/iron superoxide dismutase, binding site RY45_07385 IPR036314 RY45_07385 RY45_07385 IPR036324 RY45_07385 RY45_07390 IPR002109 Glutaredoxin RY45_07390 IPR004480 Monothiol glutaredoxin-related RY45_07390 IPR014434 Monothiol glutaredoxin RY45_07390 IPR036249 RY45_07390 RY45_07395 IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p RY45_07395 IPR023267 RNA (C5-cytosine) methyltransferase RY45_07395 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_07400 IPR024079 Metallopeptidase, catalytic domain RY45_07410 IPR000659 Pyridoxamine 5'-phosphate oxidase RY45_07410 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain RY45_07410 IPR012349 FMN-binding split barrel RY45_07410 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal RY45_07410 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site RY45_07415 IPR004045 Glutathione S-transferase, N-terminal RY45_07415 IPR004046 Glutathione S-transferase, C-terminal RY45_07415 IPR036249 RY45_07415 RY45_07415 IPR036282 RY45_07415 RY45_07420 IPR000182 GNAT domain RY45_07420 IPR016181 Acyl-CoA N-acyltransferase RY45_07425 IPR016181 Acyl-CoA N-acyltransferase RY45_07440 IPR003347 JmjC domain RY45_07445 IPR000362 Fumarate lyase family RY45_07445 IPR004769 Adenylosuccinate lyase RY45_07445 IPR008948 L-Aspartase-like RY45_07445 IPR013539 Adenylosuccinate lyase PurB, C-terminal RY45_07445 IPR020557 Fumarate lyase, conserved site RY45_07445 IPR022761 Fumarate lyase, N-terminal RY45_07445 IPR024083 Fumarase/histidase, N-terminal RY45_07450 IPR007451 Uncharacterised protein family UPF0274 RY45_07450 IPR035932 RY45_07450 RY45_07455 IPR004506 tRNA-specific 2-thiouridylase RY45_07455 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_07455 IPR023382 Adenine nucleotide alpha hydrolase-like domains RY45_07460 IPR000086 NUDIX hydrolase domain RY45_07460 IPR015797 NUDIX hydrolase domain-like RY45_07460 IPR020084 NUDIX hydrolase, conserved site RY45_07460 IPR020476 NUDIX hydrolase RY45_07465 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F RY45_07465 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_07465 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site RY45_07465 IPR020103 Pseudouridine synthase, catalytic domain RY45_07470 IPR000032 Phosphocarrier HPr protein-like RY45_07470 IPR002178 PTS EIIA type-2 domain RY45_07470 IPR016152 Phosphotransferase/anion transporter RY45_07470 IPR016910 Uncharacterised conserved protein UCP029195, PTS-EIIA 2 RY45_07470 IPR035895 RY45_07470 RY45_07475 IPR003353 Phosphotransferase system, fructose-specific IIB subunit RY45_07475 IPR003501 Phosphotransferase system, EIIB component, type 2/3 RY45_07475 IPR036095 RY45_07475 RY45_07480 IPR000849 Sugar phosphate transporter RY45_07480 IPR011701 Major facilitator superfamily RY45_07480 IPR036259 RY45_07480 RY45_07495 IPR002178 PTS EIIA type-2 domain RY45_07495 IPR003352 Phosphotransferase system, EIIC RY45_07495 IPR003353 Phosphotransferase system, fructose-specific IIB subunit RY45_07495 IPR003501 Phosphotransferase system, EIIB component, type 2/3 RY45_07495 IPR004715 Phosphotransferase system, IIA component fructose subfamily RY45_07495 IPR006327 Phosphotransferase system, fructose IIC component RY45_07495 IPR016152 Phosphotransferase/anion transporter RY45_07495 IPR036095 RY45_07495 RY45_07505 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07510 IPR001347 Sugar isomerase (SIS) RY45_07520 IPR000551 MerR-type HTH domain RY45_07520 IPR009061 DNA binding domain, putative RY45_07525 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal RY45_07525 IPR013785 Aldolase-type TIM barrel RY45_07530 IPR000843 Transcription regulator HTH, LacI RY45_07530 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_07530 IPR010982 Lambda repressor-like, DNA-binding domain RY45_07530 IPR028082 Periplasmic binding protein-like I RY45_07535 IPR001996 Phosphotransferase system, IIB component, type 1 RY45_07535 IPR003352 Phosphotransferase system, EIIC RY45_07535 IPR011301 PTS system, maltose/glucose-specific IIBC component RY45_07535 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site RY45_07535 IPR036878 RY45_07535 RY45_07540 IPR004839 Aminotransferase, class I/classII RY45_07540 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_07540 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_07540 IPR015424 Pyridoxal phosphate-dependent transferase RY45_07540 IPR027619 Putative C-S lyase RY45_07555 IPR002178 PTS EIIA type-2 domain RY45_07555 IPR003352 Phosphotransferase system, EIIC RY45_07555 IPR003353 Phosphotransferase system, fructose-specific IIB subunit RY45_07555 IPR003501 Phosphotransferase system, EIIB component, type 2/3 RY45_07555 IPR004715 Phosphotransferase system, IIA component fructose subfamily RY45_07555 IPR006327 Phosphotransferase system, fructose IIC component RY45_07555 IPR016152 Phosphotransferase/anion transporter RY45_07555 IPR036095 RY45_07555 RY45_07565 IPR001250 Mannose-6-phosphate isomerase, type I RY45_07565 IPR011051 RmlC-like cupin domain RY45_07565 IPR014710 RmlC-like jelly roll fold RY45_07565 IPR016305 Mannose-6-phosphate isomerase RY45_07565 IPR018050 Phosphomannose isomerase, type I, conserved site RY45_07570 IPR009057 Homeodomain-like RY45_07570 IPR018060 DNA binding HTH domain, AraC-type RY45_07570 IPR018062 HTH domain AraC-type, conserved site RY45_07570 IPR020449 Transcription regulator HTH, AraC- type RY45_07575 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic RY45_07575 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site RY45_07575 IPR024084 Isopropylmalate dehydrogenase-like domain RY45_07580 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RY45_07580 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_07580 IPR011780 D-serine ammonia-lyase RY45_07580 IPR036052 RY45_07580 RY45_07585 IPR003474 Gluconate transporter RY45_07590 IPR000847 Transcription regulator HTH, LysR RY45_07590 IPR005119 LysR, substrate-binding RY45_07590 IPR011781 D-serine deaminase transcriptional activator RY45_07590 IPR036388 RY45_07590 RY45_07590 IPR036390 RY45_07590 RY45_07600 IPR007416 Protein of unknown function DUF469 RY45_07610 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_07610 IPR003356 DNA methylase, adenine-specific RY45_07610 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain RY45_07610 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_07610 IPR038333 RY45_07610 RY45_07615 IPR001650 Helicase, C-terminal RY45_07615 IPR006935 Helicase/UvrB domain RY45_07615 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal RY45_07615 IPR013670 EcoEI R protein C-terminal domain RY45_07615 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_07615 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07620 IPR007560 Restriction endonuclease type IV, Mrr RY45_07620 IPR011335 Restriction endonuclease type II-like RY45_07620 IPR025745 Restriction system protein Mrr-like N-terminal domain RY45_07625 IPR002104 Integrase, catalytic RY45_07625 IPR010998 Integrase, Lambda-type, N-terminal RY45_07625 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_07625 IPR013762 Integrase-like, catalytic core RY45_07625 IPR022000 Domain of unknown function (DUF3596) RY45_07625 IPR025269 Phage integrase SAM-like domain RY45_07650 IPR025518 Protein of unknown function DUF4406 RY45_07685 IPR007476 Putative exonuclease, RdgC RY45_07690 IPR008593 DNA N-6-adenine-methyltransferase RY45_07715 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain RY45_07750 IPR001387 Cro/C1-type helix-turn-helix domain RY45_07750 IPR010982 Lambda repressor-like, DNA-binding domain RY45_07750 IPR036286 RY45_07750 RY45_07755 IPR010982 Lambda repressor-like, DNA-binding domain RY45_07770 IPR006497 Bacteriophage lambda, GpO, N-terminal RY45_07770 IPR036388 RY45_07770 RY45_07775 IPR007693 DNA helicase, DnaB-like, N-terminal RY45_07775 IPR007694 DNA helicase, DnaB-like, C-terminal RY45_07775 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RY45_07775 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07775 IPR036185 RY45_07775 RY45_07790 IPR008711 Recombinase NinB RY45_07790 IPR036619 RY45_07790 RY45_07800 IPR031875 RY45_07800 RY45_07800 IPR038439 RY45_07800 RY45_07825 IPR021700 Protein of unknown function DUF3283 RY45_07825 IPR036745 RY45_07825 RY45_07830 IPR016024 Armadillo-type fold RY45_07835 IPR019682 Bacteriophage T7, Gp17.5, holin RY45_07840 IPR008565 Protein of unknown function DUF847 RY45_07840 IPR018537 Peptidoglycan binding domain RY45_07840 IPR023346 Lysozyme-like domain RY45_07935 IPR005039 Antirepressor protein, C-terminal RY45_07935 IPR014054 Bacteriophage regulatory protein, Rha family RY45_07955 IPR010982 Lambda repressor-like, DNA-binding domain RY45_07960 IPR000037 SsrA-binding protein RY45_07960 IPR020081 SsrA-binding protein, conserved site RY45_07960 IPR023620 Small protein B RY45_07965 IPR005031 Streptomyces cyclase/dehydrase RY45_07965 IPR023393 START-like domain RY45_07970 IPR005346 RnfH protein RY45_07970 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RY45_07970 IPR037021 RY45_07970 RY45_07975 IPR016040 NAD(P)-binding domain RY45_07975 IPR036291 RY45_07975 RY45_07980 IPR007450 Lipoprotein SmpA/OmlA RY45_07980 IPR026592 Outer membrane protein assembly factor BamE RY45_07980 IPR037873 RY45_07980 RY45_07985 IPR001670 Alcohol dehydrogenase, iron-type RY45_07985 IPR018211 Alcohol dehydrogenase, iron-type, conserved site RY45_07990 IPR000845 Nucleoside phosphorylase domain RY45_07990 IPR010058 Uridine phosphorylase RY45_07990 IPR018016 Nucleoside phosphorylase, conserved site RY45_07990 IPR035994 RY45_07990 RY45_07995 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_07995 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RY45_07995 IPR020103 Pseudouridine synthase, catalytic domain RY45_08000 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain RY45_08000 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site RY45_08000 IPR036452 RY45_08000 RY45_08010 IPR017162 Uncharacterised conserved protein UCP037266 RY45_08010 IPR036388 RY45_08010 RY45_08015 IPR011088 Bacteriophage phiNM3, A0EWY4 RY45_08020 IPR003660 HAMP linker domain RY45_08020 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_08020 IPR004090 Chemotaxis methyl-accepting receptor RY45_08025 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_08030 IPR010846 Protein of unknown function DUF1460 RY45_08030 IPR038765 RY45_08030 RY45_08035 IPR006153 Cation/H+ exchanger RY45_08035 IPR038770 RY45_08035 RY45_08040 IPR011496 Beta-N-acetylglucosaminidase RY45_08040 IPR017853 Glycoside hydrolase, superfamily RY45_08045 IPR005170 Transporter-associated domain RY45_08045 IPR006037 Regulator of K+ conductance, C-terminal RY45_08045 IPR006153 Cation/H+ exchanger RY45_08045 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_08045 IPR023729 K(+)/H(+) antiporter NhaP2 RY45_08045 IPR036318 RY45_08045 RY45_08045 IPR036721 RY45_08045 RY45_08045 IPR038770 RY45_08045 RY45_08050 IPR003709 Peptidase M15B/M15C RY45_08050 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RY45_08055 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RY45_08055 IPR002933 Peptidase M20 RY45_08055 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria RY45_08055 IPR011650 Peptidase M20, dimerisation domain RY45_08055 IPR036264 RY45_08055 RY45_08060 IPR006504 Transcriptional regulator Spx/MgsR RY45_08060 IPR006660 Arsenate reductase-like RY45_08060 IPR036249 RY45_08060 RY45_08065 IPR000847 Transcription regulator HTH, LysR RY45_08065 IPR005119 LysR, substrate-binding RY45_08065 IPR036388 RY45_08065 RY45_08065 IPR036390 RY45_08065 RY45_08075 IPR004669 C4-dicarboxylate anaerobic carrier RY45_08075 IPR018385 C4-dicarboxylate anaerobic carrier-like RY45_08080 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RY45_08080 IPR002933 Peptidase M20 RY45_08080 IPR011650 Peptidase M20, dimerisation domain RY45_08080 IPR017150 Peptidase M20, glutamate carboxypeptidase RY45_08080 IPR036264 RY45_08080 RY45_08085 IPR002761 DUF71 domain RY45_08085 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_08090 IPR004668 Anaerobic c4-dicarboxylate membrane transporter RY45_08095 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb RY45_08095 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) RY45_08095 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type RY45_08095 IPR004522 Asparagine-tRNA ligase RY45_08095 IPR012340 Nucleic acid-binding, OB-fold RY45_08105 IPR003660 HAMP linker domain RY45_08110 IPR005814 Aminotransferase class-III RY45_08110 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA RY45_08110 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_08110 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_08110 IPR015424 Pyridoxal phosphate-dependent transferase RY45_08115 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB RY45_08115 IPR006638 Elongator protein 3/MiaB/NifB RY45_08115 IPR007197 Radical SAM RY45_08115 IPR010722 Biotin and thiamin synthesis-associated domain RY45_08115 IPR013785 Aldolase-type TIM barrel RY45_08115 IPR024177 Biotin synthase RY45_08120 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site RY45_08120 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type RY45_08120 IPR004839 Aminotransferase, class I/classII RY45_08120 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_08120 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_08120 IPR015424 Pyridoxal phosphate-dependent transferase RY45_08120 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria RY45_08125 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC RY45_08125 IPR013216 Methyltransferase type 11 RY45_08125 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_08130 IPR004472 Dethiobiotin synthase BioD RY45_08130 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08135 IPR001915 Peptidase M48 RY45_08135 IPR022919 Peptidase M48, protease HtpX, putative RY45_08140 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_08145 IPR001041 2Fe-2S ferredoxin-type domain RY45_08145 IPR001433 Oxidoreductase FAD/NAD(P)-binding RY45_08145 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RY45_08145 IPR005302 Molybdenum cofactor sulfurase, C-terminal RY45_08145 IPR005303 MOSC, N-terminal beta barrel RY45_08145 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RY45_08145 IPR008333 Oxidoreductase, FAD-binding domain RY45_08145 IPR011037 Pyruvate kinase-like, insert domain RY45_08145 IPR012675 Beta-grasp domain RY45_08145 IPR017938 Riboflavin synthase-like beta-barrel RY45_08145 IPR036010 RY45_08145 RY45_08145 IPR039261 RY45_08145 RY45_08150 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II RY45_08150 IPR009051 Alpha-helical ferredoxin RY45_08150 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_08150 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_08150 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_08150 IPR028261 Dihydroprymidine dehydrogenase domain II RY45_08150 IPR036188 RY45_08150 RY45_08155 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain RY45_08155 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal RY45_08155 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II RY45_08155 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RY45_08155 IPR011895 Pyruvate-flavodoxin oxidoreductase RY45_08155 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_08155 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_08155 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain RY45_08155 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain RY45_08155 IPR029061 Thiamin diphosphate-binding fold RY45_08155 IPR033412 RY45_08155 RY45_08160 IPR007420 Protein of unknown function DUF465 RY45_08170 IPR002528 Multi antimicrobial extrusion protein RY45_08175 IPR002645 STAS domain RY45_08175 IPR011547 Sulphate transporter RY45_08175 IPR036513 RY45_08175 RY45_08180 IPR009267 Protein of unknown function DUF925 RY45_08185 IPR016181 Acyl-CoA N-acyltransferase RY45_08185 IPR031165 RY45_08185 RY45_08190 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site RY45_08190 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_08190 IPR005856 Cysteine synthase K/M RY45_08190 IPR005858 Cysteine synthase B RY45_08190 IPR036052 RY45_08190 RY45_08200 IPR001670 Alcohol dehydrogenase, iron-type RY45_08200 IPR018211 Alcohol dehydrogenase, iron-type, conserved site RY45_08210 IPR001647 DNA-binding HTH domain, TetR-type RY45_08210 IPR009057 Homeodomain-like RY45_08215 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent RY45_08215 IPR015590 Aldehyde dehydrogenase domain RY45_08215 IPR016161 Aldehyde/histidinol dehydrogenase RY45_08215 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_08215 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_08215 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RY45_08225 IPR000064 Endopeptidase, NLPC/P60 domain RY45_08225 IPR038765 RY45_08225 RY45_08230 IPR000772 Ricin B lectin domain RY45_08230 IPR016183 Leukocidin/porin RY45_08230 IPR022220 Hemolytic toxin, N-terminal RY45_08230 IPR035992 RY45_08230 RY45_08230 IPR036435 RY45_08230 RY45_08235 IPR000847 Transcription regulator HTH, LysR RY45_08235 IPR005119 LysR, substrate-binding RY45_08235 IPR036388 RY45_08235 RY45_08235 IPR036390 RY45_08235 RY45_08240 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RY45_08240 IPR019479 Peroxiredoxin, C-terminal RY45_08240 IPR024706 Peroxiredoxin, AhpC-type RY45_08240 IPR036249 RY45_08240 RY45_08245 IPR011758 Alpha-L-glutamate ligase-related protein RY45_08245 IPR039523 RY45_08245 RY45_08250 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices RY45_08250 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase RY45_08255 IPR021109 Aspartic peptidase domain RY45_08260 IPR010017 tRNA (mo5U34)-methyltransferase RY45_08260 IPR027555 tRNA (mo5U34)-methyltransferase-like RY45_08260 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_08265 IPR005271 tRNA (cmo5U34)-methyltransferase RY45_08265 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_08270 IPR002763 Protein of unknown function DUF72 RY45_08270 IPR036520 RY45_08270 RY45_08275 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb RY45_08275 IPR004115 GAD-like domain RY45_08275 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) RY45_08275 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type RY45_08275 IPR004524 Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type RY45_08275 IPR012340 Nucleic acid-binding, OB-fold RY45_08275 IPR029351 GAD domain RY45_08280 IPR002876 Transcriptional regulator TACO1-like RY45_08280 IPR017856 Integrase, N-terminal zinc-binding domain-like RY45_08280 IPR026564 Transcriptional regulator TACO1-like, domain 3 RY45_08280 IPR029072 YebC-like RY45_08285 IPR000917 Sulfatase RY45_08285 IPR012549 Domain of unknown function DUF1705 RY45_08285 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_08285 IPR017850 Alkaline-phosphatase-like, core domain RY45_08290 IPR000600 ROK RY45_08290 IPR036388 RY45_08290 RY45_08290 IPR036390 RY45_08290 RY45_08295 IPR003764 N-acetylglucosamine-6-phosphate deacetylase RY45_08295 IPR006680 Amidohydrolase 1 RY45_08295 IPR011059 Metal-dependent hydrolase, composite domain RY45_08295 IPR032466 RY45_08295 RY45_08300 IPR004547 Glucosamine-6-phosphate isomerase RY45_08300 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase RY45_08300 IPR018321 Glucosamine-6-phosphate isomerase, conserved site RY45_08300 IPR037171 RY45_08300 RY45_08305 IPR001996 Phosphotransferase system, IIB component, type 1 RY45_08305 IPR003352 Phosphotransferase system, EIIC RY45_08305 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component RY45_08305 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site RY45_08305 IPR036878 RY45_08305 RY45_08310 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain RY45_08310 IPR004867 Chitobiase/beta-hexosaminidase C-terminal domain RY45_08310 IPR008965 Carbohydrate-binding domain RY45_08310 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain RY45_08310 IPR013783 Immunoglobulin-like fold RY45_08310 IPR014756 Immunoglobulin E-set RY45_08310 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal RY45_08310 IPR015883 Glycoside hydrolase family 20, catalytic core RY45_08310 IPR017853 Glycoside hydrolase, superfamily RY45_08310 IPR025705 Beta-hexosaminidase RY45_08310 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like RY45_08315 IPR000924 Glutamyl/glutaminyl-tRNA synthetase RY45_08315 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_08315 IPR004514 Glutamine-tRNA synthetase RY45_08315 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain RY45_08315 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_08315 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain RY45_08315 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RY45_08315 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain RY45_08315 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain RY45_08315 IPR022861 Glutamine-tRNA ligase, bacterial RY45_08320 IPR002481 Ferric-uptake regulator RY45_08320 IPR036388 RY45_08320 RY45_08320 IPR036390 RY45_08320 RY45_08325 IPR027961 Protein of unknown function DUF4442 RY45_08325 IPR029069 HotDog domain RY45_08330 IPR001226 Flavodoxin, conserved site RY45_08330 IPR008254 Flavodoxin/nitric oxide synthase RY45_08330 IPR010086 Flavodoxin, long chain RY45_08330 IPR029039 Flavoprotein-like RY45_08335 IPR002145 Ribbon-helix-helix protein, copG RY45_08340 IPR021249 Protein of unknown function DUF2788 RY45_08345 IPR000073 Alpha/beta hydrolase fold-1 RY45_08345 IPR000639 Epoxide hydrolase-like RY45_08345 IPR029058 Alpha/Beta hydrolase fold RY45_08350 IPR005621 Regulation modulator SeqA RY45_08350 IPR010985 Ribbon-helix-helix RY45_08350 IPR013321 Arc-type ribbon-helix-helix RY45_08350 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain RY45_08350 IPR033761 RY45_08350 RY45_08350 IPR036835 RY45_08350 RY45_08355 IPR005843 Alpha-D-phosphohexomutase, C-terminal RY45_08355 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I RY45_08355 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II RY45_08355 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III RY45_08355 IPR005852 Phosphoglucomutase, alpha-D-glucose specific RY45_08355 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III RY45_08355 IPR016066 Alpha-D-phosphohexomutase, conserved site RY45_08355 IPR036900 RY45_08355 RY45_08360 IPR000620 Drug/metabolite transporter RY45_08365 IPR000835 MarR-type HTH domain RY45_08365 IPR036388 RY45_08365 RY45_08365 IPR036390 RY45_08365 RY45_08370 IPR001647 DNA-binding HTH domain, TetR-type RY45_08370 IPR009057 Homeodomain-like RY45_08370 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RY45_08370 IPR036271 RY45_08370 RY45_08375 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RY45_08375 IPR036249 RY45_08375 RY45_08380 IPR011757 Lytic transglycosylase MltB RY45_08380 IPR023346 Lysozyme-like domain RY45_08380 IPR031304 RY45_08380 RY45_08385 IPR000462 CDP-alcohol phosphatidyltransferase RY45_08390 IPR003439 ABC transporter-like RY45_08390 IPR003593 AAA+ ATPase domain RY45_08390 IPR017871 ABC transporter, conserved site RY45_08390 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08395 IPR035906 RY45_08395 RY45_08400 IPR006059 Bacterial extracellular solute-binding, family 1 RY45_08400 IPR027020 Protein ynjB RY45_08405 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_08405 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RY45_08405 IPR016156 FAD/NAD-linked reductase, dimerisation domain RY45_08405 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_08405 IPR032816 RY45_08405 RY45_08405 IPR036188 RY45_08405 RY45_08410 IPR003779 Carboxymuconolactone decarboxylase-like RY45_08410 IPR004675 Alkylhydroperoxidase AhpD core RY45_08410 IPR029032 AhpD-like RY45_08415 IPR010865 Protein of unknown function DUF1499 RY45_08420 IPR002569 Peptide methionine sulphoxide reductase MsrA RY45_08420 IPR036509 RY45_08420 RY45_08425 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type RY45_08435 IPR000184 Bacterial surface antigen (D15) RY45_08435 IPR010827 Surface antigen variable number RY45_08435 IPR035243 RY45_08435 RY45_08440 IPR007452 Protein of unknown function DUF490 RY45_08455 IPR021879 Ribosomal S4P (gammaproteobacterial) RY45_08460 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein RY45_08460 IPR036567 RY45_08460 RY45_08465 IPR000014 PAS domain RY45_08465 IPR000160 GGDEF domain RY45_08465 IPR001633 EAL domain RY45_08465 IPR029787 Nucleotide cyclase RY45_08465 IPR035919 RY45_08465 RY45_08465 IPR035965 RY45_08465 RY45_08470 IPR000189 Prokaryotic transglycosylase, active site RY45_08470 IPR008258 Lytic transglycosylase-like SLT domain RY45_08470 IPR008939 Lytic transglycosylase, superhelical U-shaped RY45_08470 IPR012289 Lytic transglycosylase, superhelical linker RY45_08470 IPR023346 Lysozyme-like domain RY45_08470 IPR037061 RY45_08470 RY45_08475 IPR000843 Transcription regulator HTH, LacI RY45_08475 IPR010982 Lambda repressor-like, DNA-binding domain RY45_08475 IPR028082 Periplasmic binding protein-like I RY45_08480 IPR036291 RY45_08480 RY45_08485 IPR006683 Thioesterase superfamily RY45_08485 IPR029069 HotDog domain RY45_08495 IPR005135 Endonuclease/exonuclease/phosphatase RY45_08495 IPR036691 RY45_08495 RY45_08500 IPR000189 Prokaryotic transglycosylase, active site RY45_08500 IPR008258 Lytic transglycosylase-like SLT domain RY45_08500 IPR018392 LysM domain RY45_08500 IPR023346 Lysozyme-like domain RY45_08500 IPR036779 RY45_08500 RY45_08505 IPR001279 Beta-lactamase-like RY45_08505 IPR017782 Hydroxyacylglutathione hydrolase RY45_08505 IPR032282 RY45_08505 RY45_08505 IPR036866 RY45_08505 RY45_08510 IPR013216 Methyltransferase type 11 RY45_08510 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_08515 IPR002156 Ribonuclease H domain RY45_08515 IPR012337 Ribonuclease H-like domain RY45_08515 IPR022892 Ribonuclease H RY45_08515 IPR036397 RY45_08515 RY45_08520 IPR006054 DNA polymerase III, epsilon subunit RY45_08520 IPR006309 DNA polymerase 3, epsilon subunit RY45_08520 IPR012337 Ribonuclease H-like domain RY45_08520 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_08520 IPR036397 RY45_08520 RY45_08525 IPR020010 Conserved hypothetical protein CHP03503 RY45_08530 IPR003695 Ppx/GppA phosphatase RY45_08530 IPR022371 Exopolyphosphatase RY45_08530 IPR030673 RY45_08530 RY45_08535 IPR003414 Polyphosphate kinase RY45_08535 IPR024953 Polyphosphate kinase middle domain RY45_08535 IPR025198 Polyphosphate kinase N-terminal domain RY45_08535 IPR025200 Polyphosphate kinase C-terminal domain RY45_08535 IPR036830 RY45_08535 RY45_08535 IPR036832 RY45_08535 RY45_08540 IPR016867 Glycine cleavage repressor GcvR RY45_08545 IPR013498 DNA topoisomerase, type IA, zn finger RY45_08545 IPR024402 Domain of unknown function DUF2726 RY45_08550 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_08550 IPR002197 DNA binding HTH domain, Fis-type RY45_08550 IPR003593 AAA+ ATPase domain RY45_08550 IPR009057 Homeodomain-like RY45_08550 IPR010518 Flagellar regulatory FleQ RY45_08550 IPR011006 CheY-like superfamily RY45_08550 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_08550 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_08550 IPR025944 Sigma-54 interaction domain, conserved site RY45_08550 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08555 IPR000014 PAS domain RY45_08555 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_08555 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_08555 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_08555 IPR035965 RY45_08555 RY45_08555 IPR036097 RY45_08555 RY45_08555 IPR036890 RY45_08555 RY45_08560 IPR001789 Signal transduction response regulator, receiver domain RY45_08560 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_08560 IPR002197 DNA binding HTH domain, Fis-type RY45_08560 IPR003593 AAA+ ATPase domain RY45_08560 IPR009057 Homeodomain-like RY45_08560 IPR011006 CheY-like superfamily RY45_08560 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_08560 IPR025944 Sigma-54 interaction domain, conserved site RY45_08560 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08565 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RY45_08565 IPR036069 RY45_08565 RY45_08570 IPR001555 Phosphoribosylglycinamide formyltransferase, active site RY45_08570 IPR002376 Formyl transferase, N-terminal RY45_08570 IPR004607 Phosphoribosylglycinamide formyltransferase RY45_08570 IPR036477 RY45_08570 RY45_08575 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase RY45_08575 IPR010918 AIR synthase-related protein, C-terminal domain RY45_08575 IPR016188 PurM, N-terminal-like RY45_08575 IPR036676 RY45_08575 RY45_08575 IPR036921 RY45_08575 RY45_08580 IPR005765 Uracil phosphoribosyl transferase RY45_08580 IPR029057 Phosphoribosyltransferase-like RY45_08580 IPR034332 RY45_08580 RY45_08585 IPR018642 Protein of unknown function DUF2066 RY45_08590 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) RY45_08590 IPR017788 DnaA regulatory inactivator Hda RY45_08590 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_08590 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08595 IPR006254 Isocitrate lyase RY45_08595 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_08595 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site RY45_08600 IPR001465 Malate synthase RY45_08600 IPR006252 Malate synthase A RY45_08600 IPR011076 Malate synthase-like RY45_08610 IPR016192 APOBEC/CMP deaminase, zinc-binding RY45_08610 IPR016193 Cytidine deaminase-like RY45_08610 IPR028883 tRNA-specific adenosine deaminase RY45_08615 IPR000515 MetI-like domain RY45_08615 IPR035906 RY45_08615 RY45_08615 IPR036322 RY45_08615 RY45_08625 IPR003439 ABC transporter-like RY45_08625 IPR003593 AAA+ ATPase domain RY45_08625 IPR005670 Phosphate transport system permease protein 1 RY45_08625 IPR017871 ABC transporter, conserved site RY45_08625 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08630 IPR026022 PhoU domain RY45_08630 IPR028366 Phosphate transport system protein PhoU RY45_08630 IPR038078 RY45_08630 RY45_08640 IPR017483 Conserved hypothetical protein CHP03034 RY45_08645 IPR002514 Transposase IS3/IS911family RY45_08645 IPR009057 Homeodomain-like RY45_08645 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_08645 IPR013762 Integrase-like, catalytic core RY45_08650 IPR002550 Domain of unknown function DUF21 RY45_08650 IPR005170 Transporter-associated domain RY45_08650 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_08650 IPR036318 RY45_08650 RY45_08660 IPR003726 Homocysteine S-methyltransferase RY45_08660 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT RY45_08660 IPR036589 RY45_08660 RY45_08665 IPR002293 Amino acid/polyamine transporter I RY45_08665 IPR004754 Amino acid antiporter RY45_08675 IPR001638 Extracellular solute-binding protein, family 3 RY45_08680 IPR003439 ABC transporter-like RY45_08680 IPR003593 AAA+ ATPase domain RY45_08680 IPR017871 ABC transporter, conserved site RY45_08680 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08680 IPR030679 RY45_08680 RY45_08685 IPR000515 MetI-like domain RY45_08685 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_08685 IPR035906 RY45_08685 RY45_08690 IPR001320 Ionotropic glutamate receptor RY45_08690 IPR001638 Extracellular solute-binding protein, family 3 RY45_08690 IPR018313 Extracellular solute-binding protein, family 3, conserved site RY45_08695 IPR000160 GGDEF domain RY45_08695 IPR029787 Nucleotide cyclase RY45_08700 IPR000849 Sugar phosphate transporter RY45_08700 IPR011701 Major facilitator superfamily RY45_08700 IPR036259 RY45_08700 RY45_08705 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_08705 IPR007895 MASE1 RY45_08705 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain RY45_08705 IPR036890 RY45_08705 RY45_08710 IPR000792 Transcription regulator LuxR, C-terminal RY45_08710 IPR001789 Signal transduction response regulator, receiver domain RY45_08710 IPR011006 CheY-like superfamily RY45_08710 IPR016032 Signal transduction response regulator, C-terminal effector RY45_08715 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal RY45_08715 IPR023459 Transcription elongation factor GreA/GreB family RY45_08715 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain RY45_08715 IPR036953 RY45_08715 RY45_08725 IPR001638 Extracellular solute-binding protein, family 3 RY45_08735 IPR001952 Alkaline phosphatase RY45_08735 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_08735 IPR017850 Alkaline-phosphatase-like, core domain RY45_08740 IPR001952 Alkaline phosphatase RY45_08740 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_08740 IPR017850 Alkaline-phosphatase-like, core domain RY45_08745 IPR006073 GTP binding domain RY45_08745 IPR016478 GTPase, MTG1 RY45_08745 IPR019991 GTP-binding protein, ribosome biogenesis, YlqF RY45_08745 IPR023179 GTP-binding protein, orthogonal bundle domain RY45_08745 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08750 IPR011701 Major facilitator superfamily RY45_08750 IPR023745 MSF-type transporter, YcaD RY45_08750 IPR036259 RY45_08750 RY45_08755 IPR000286 Histone deacetylase superfamily RY45_08755 IPR023696 Ureohydrolase domain RY45_08755 IPR023801 Histone deacetylase domain RY45_08755 IPR037138 RY45_08755 RY45_08760 IPR018635 Uncharacterised protein family UPF0319 RY45_08765 IPR006555 ATP-dependent helicase, C-terminal RY45_08765 IPR010614 DEAD2 RY45_08765 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08765 IPR039000 RY45_08765 RY45_08770 IPR001897 Porin, gammaproteobacterial RY45_08770 IPR023614 Porin domain RY45_08780 IPR000796 Aspartate/other aminotransferase RY45_08780 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site RY45_08780 IPR004839 Aminotransferase, class I/classII RY45_08780 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_08780 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_08780 IPR015424 Pyridoxal phosphate-dependent transferase RY45_08790 IPR001453 Molybdopterin binding domain RY45_08790 IPR005110 MoeA, N-terminal and linker domain RY45_08790 IPR005111 MoeA, C-terminal, domain IV RY45_08790 IPR008284 Molybdenum cofactor biosynthesis, conserved site RY45_08790 IPR036135 RY45_08790 RY45_08790 IPR036425 RY45_08790 RY45_08790 IPR036688 RY45_08790 RY45_08795 IPR001474 GTP cyclohydrolase I RY45_08795 IPR018234 GTP cyclohydrolase I, conserved site RY45_08795 IPR020602 GTP cyclohydrolase I domain RY45_08800 IPR003660 HAMP linker domain RY45_08800 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_08800 IPR024478 4HB MCP domain RY45_08805 IPR000559 Formate-tetrahydrofolate ligase, FTHFS RY45_08805 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site RY45_08805 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08815 IPR000847 Transcription regulator HTH, LysR RY45_08815 IPR005119 LysR, substrate-binding RY45_08815 IPR036388 RY45_08815 RY45_08815 IPR036390 RY45_08815 RY45_08820 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RY45_08820 IPR036761 RY45_08820 RY45_08830 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RY45_08830 IPR036291 RY45_08830 RY45_08835 IPR011893 Selenoprotein, Rdx type RY45_08835 IPR036249 RY45_08835 RY45_08840 IPR002123 Phospholipid/glycerol acyltransferase RY45_08840 IPR016181 Acyl-CoA N-acyltransferase RY45_08845 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RY45_08845 IPR002933 Peptidase M20 RY45_08845 IPR010161 Peptidase M20B, tripeptide aminopeptidase RY45_08845 IPR011650 Peptidase M20, dimerisation domain RY45_08845 IPR036264 RY45_08845 RY45_08855 IPR000183 Ornithine/DAP/Arg decarboxylase RY45_08855 IPR002985 Arginine decarboxylase RY45_08855 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RY45_08855 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal RY45_08855 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site RY45_08855 IPR029066 PLP-binding barrel RY45_08870 IPR003660 HAMP linker domain RY45_08870 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_08870 IPR004090 Chemotaxis methyl-accepting receptor RY45_08875 IPR018227 Tryptophan/tyrosine permease RY45_08880 IPR006056 Enamine/imine deaminase YjgF-like RY45_08880 IPR006175 YjgF/Yer057p/UK114 family RY45_08880 IPR035959 RY45_08880 RY45_08885 IPR005130 Serine dehydratase-like, alpha subunit RY45_08885 IPR021144 Uncharacterised protein family UPF0597 RY45_08890 IPR013559 YheO-like RY45_08890 IPR039445 RY45_08890 RY45_08895 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site RY45_08895 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_08895 IPR029033 Histidine phosphatase superfamily RY45_08900 IPR002711 HNH endonuclease RY45_08900 IPR003615 HNH nuclease RY45_08910 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_08910 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_08915 IPR022742 Putative lysophospholipase RY45_08915 IPR029058 Alpha/Beta hydrolase fold RY45_08920 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase RY45_08920 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal RY45_08920 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain RY45_08920 IPR014362 Glutamate dehydrogenase RY45_08920 IPR033524 RY45_08920 RY45_08920 IPR036291 RY45_08920 RY45_08925 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F RY45_08925 IPR002942 RNA-binding S4 domain RY45_08925 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_08925 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site RY45_08925 IPR020103 Pseudouridine synthase, catalytic domain RY45_08925 IPR036986 RY45_08925 RY45_08930 IPR011701 Major facilitator superfamily RY45_08930 IPR036259 RY45_08930 RY45_08935 IPR002125 CMP/dCMP deaminase, zinc-binding RY45_08935 IPR016192 APOBEC/CMP deaminase, zinc-binding RY45_08935 IPR016193 Cytidine deaminase-like RY45_08940 IPR000847 Transcription regulator HTH, LysR RY45_08940 IPR005119 LysR, substrate-binding RY45_08940 IPR036388 RY45_08940 RY45_08940 IPR036390 RY45_08940 RY45_08945 IPR011701 Major facilitator superfamily RY45_08945 IPR036259 RY45_08945 RY45_08950 IPR010499 Bacterial transcription activator, effector binding RY45_08950 IPR011256 Regulatory factor, effector binding domain RY45_08950 IPR029441 Integron-associated effector binding protein RY45_08955 IPR006683 Thioesterase superfamily RY45_08955 IPR029069 HotDog domain RY45_08965 IPR000620 Drug/metabolite transporter RY45_08970 IPR007486 Protein of unknown function DUF533 RY45_08970 IPR029024 TerB-like RY45_08975 IPR000524 Transcription regulator HTH, GntR RY45_08975 IPR004839 Aminotransferase, class I/classII RY45_08975 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_08975 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_08975 IPR015424 Pyridoxal phosphate-dependent transferase RY45_08975 IPR036388 RY45_08975 RY45_08975 IPR036390 RY45_08975 RY45_08980 IPR002585 Cytochrome d ubiquinol oxidase, subunit I RY45_08985 IPR003317 Cytochrome d ubiquinol oxidase, subunit II RY45_08990 IPR011724 Cyd operon protein YbgT RY45_08990 IPR012994 Membrane bound YbgT-like RY45_08995 IPR001958 Tetracycline resistance protein, TetA/multidrug resistance protein MdtG RY45_08995 IPR011701 Major facilitator superfamily RY45_08995 IPR036259 RY45_08995 RY45_09000 IPR018170 Aldo/keto reductase, conserved site RY45_09000 IPR020471 Aldo/keto reductase subgroup RY45_09000 IPR023210 NADP-dependent oxidoreductase domain RY45_09000 IPR036812 RY45_09000 RY45_09005 IPR007138 Antibiotic biosynthesis monooxygenase-like domain RY45_09005 IPR011008 Dimeric alpha-beta barrel RY45_09010 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_09010 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_09020 IPR000847 Transcription regulator HTH, LysR RY45_09020 IPR005119 LysR, substrate-binding RY45_09020 IPR036388 RY45_09020 RY45_09020 IPR036390 RY45_09020 RY45_09025 IPR000577 RY45_09025 RY45_09025 IPR005999 Glycerol kinase RY45_09025 IPR018483 Carbohydrate kinase, FGGY, conserved site RY45_09025 IPR018484 Carbohydrate kinase, FGGY, N-terminal RY45_09025 IPR018485 Carbohydrate kinase, FGGY, C-terminal RY45_09030 IPR000425 Major intrinsic protein RY45_09030 IPR022357 Major intrinsic protein, conserved site RY45_09030 IPR023271 Aquaporin-like RY45_09035 IPR000849 Sugar phosphate transporter RY45_09035 IPR005267 Glycerol-3-phosphate transporter RY45_09035 IPR011701 Major facilitator superfamily RY45_09035 IPR021159 Glycerate/sugar phosphate transporter, conserved site RY45_09035 IPR036259 RY45_09035 RY45_09040 IPR001034 HTH DeoR N-terminal domain RY45_09040 IPR014036 DeoR C-terminal sensor domain RY45_09040 IPR018356 Transcription regulator, HTH DeoR-type, conserved site RY45_09040 IPR036388 RY45_09040 RY45_09040 IPR036390 RY45_09040 RY45_09040 IPR037171 RY45_09040 RY45_09045 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase RY45_09045 IPR006076 FAD dependent oxidoreductase RY45_09045 IPR031656 RY45_09045 RY45_09045 IPR036188 RY45_09045 RY45_09045 IPR038299 RY45_09045 RY45_09050 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain RY45_09050 IPR030395 RY45_09050 RY45_09055 IPR024445 Transposase, ISXO2-like RY45_09060 IPR006218 DAHP synthetase I/KDSA RY45_09060 IPR006219 DHAP synthase, class 1 RY45_09060 IPR013785 Aldolase-type TIM barrel RY45_09065 IPR002701 Chorismate mutase RY45_09065 IPR003099 Prephenate dehydrogenase RY45_09065 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein RY45_09065 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_09065 IPR011277 Chorismate mutase, T-protein RY45_09065 IPR036263 RY45_09065 RY45_09065 IPR036291 RY45_09065 RY45_09065 IPR036979 RY45_09065 RY45_09070 IPR000847 Transcription regulator HTH, LysR RY45_09070 IPR005119 LysR, substrate-binding RY45_09070 IPR036388 RY45_09070 RY45_09070 IPR036390 RY45_09070 RY45_09075 IPR007335 Protein of unknown function DUF413 RY45_09080 IPR005658 Proteinase inhibitor I11, ecotin RY45_09080 IPR027438 Ecotin, C-terminal RY45_09080 IPR036198 RY45_09080 RY45_09085 IPR011460 Protein of unknown function DUF1566 RY45_09090 IPR011460 Protein of unknown function DUF1566 RY45_09095 IPR002884 Proprotein convertase, P RY45_09095 IPR008979 Galactose-binding domain-like RY45_09095 IPR018905 Alpha-galactosidase, NEW3 domain RY45_09100 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RY45_09100 IPR002470 Peptidase S9A, prolyl oligopeptidase RY45_09100 IPR023302 Peptidase S9A, N-terminal domain RY45_09100 IPR029058 Alpha/Beta hydrolase fold RY45_09105 IPR000531 TonB-dependent receptor, beta-barrel RY45_09105 IPR010916 TonB box, conserved site RY45_09105 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor RY45_09105 IPR011276 TonB-dependent haem/haemoglobin receptor RY45_09105 IPR012910 TonB-dependent receptor, plug RY45_09105 IPR036942 RY45_09105 RY45_09105 IPR037066 RY45_09105 RY45_09110 IPR000917 Sulfatase RY45_09110 IPR012159 Membrane sulfatase, HI0842-related RY45_09110 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_09110 IPR017850 Alkaline-phosphatase-like, core domain RY45_09110 IPR024588 Membrane sulfatase, HI0842-related, N-terminal domain RY45_09115 IPR009857 Uncharacterised protein family UPF0352 RY45_09115 IPR023202 YejL-like domain RY45_09120 IPR007358 Nucleoid-associated protein NdpA RY45_09125 IPR006059 Bacterial extracellular solute-binding, family 1 RY45_09125 IPR006060 Maltose binding protein RY45_09125 IPR006061 Bacterial extracellular solute-binding family 1, conserved site RY45_09130 IPR000515 MetI-like domain RY45_09130 IPR029345 Maltose transport system permease protein MalF, P2 domain RY45_09130 IPR035277 RY45_09130 RY45_09130 IPR035906 RY45_09130 RY45_09135 IPR000515 MetI-like domain RY45_09135 IPR035906 RY45_09135 RY45_09140 IPR003439 ABC transporter-like RY45_09140 IPR003593 AAA+ ATPase domain RY45_09140 IPR008995 Molybdate/tungstate binding, C-terminal RY45_09140 IPR013611 Transport-associated OB, type 2 RY45_09140 IPR017871 ABC transporter, conserved site RY45_09140 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09145 IPR016898 Polyphosphate kinase 2 RY45_09145 IPR022486 Polyphosphate kinase 2, PA0141 RY45_09145 IPR022488 Polyphosphate kinase-2-related RY45_09145 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09150 IPR000073 Alpha/beta hydrolase fold-1 RY45_09150 IPR000639 Epoxide hydrolase-like RY45_09150 IPR029058 Alpha/Beta hydrolase fold RY45_09155 IPR010583 MltA-interacting MipA RY45_09160 IPR002549 Uncharacterised protein family UPF0118 RY45_09165 IPR001455 TusA-like domain RY45_09165 IPR036868 RY45_09165 RY45_09170 IPR001915 Peptidase M48 RY45_09170 IPR011990 Tetratricopeptide-like helical domain RY45_09170 IPR030873 RY45_09170 RY45_09175 IPR013740 Redoxin RY45_09175 IPR017937 Thioredoxin, conserved site RY45_09175 IPR036249 RY45_09175 RY45_09180 IPR006659 Arsenate reductase RY45_09180 IPR006660 Arsenate reductase-like RY45_09180 IPR036249 RY45_09180 RY45_09185 IPR018643 Protein of unknown function DUF2069, membrane RY45_09190 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_09190 IPR029132 Choloylglycine hydrolase/NAAA C-terminal RY45_09195 IPR007431 Acyl carrier protein phosphodiesterase RY45_09200 IPR006680 Amidohydrolase 1 RY45_09200 IPR010229 Peptidase M38, beta-aspartyl dipeptidase RY45_09200 IPR011059 Metal-dependent hydrolase, composite domain RY45_09200 IPR032466 RY45_09200 RY45_09205 IPR005642 Protein of unknown function DUF340, prokaryotic membrane RY45_09210 IPR003439 ABC transporter-like RY45_09210 IPR003593 AAA+ ATPase domain RY45_09210 IPR017871 ABC transporter, conserved site RY45_09210 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09210 IPR030679 RY45_09210 RY45_09215 IPR001320 Ionotropic glutamate receptor RY45_09215 IPR001638 Extracellular solute-binding protein, family 3 RY45_09215 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein RY45_09215 IPR018313 Extracellular solute-binding protein, family 3, conserved site RY45_09220 IPR000515 MetI-like domain RY45_09220 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_09220 IPR035906 RY45_09220 RY45_09225 IPR000515 MetI-like domain RY45_09225 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_09225 IPR035906 RY45_09225 RY45_09230 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family RY45_09235 IPR001989 Radical-activating enzyme, conserved site RY45_09235 IPR007197 Radical SAM RY45_09235 IPR012838 Pyruvate formate-lyase activating enzyme RY45_09235 IPR012839 Glycyl radical enzyme activase RY45_09235 IPR013785 Aldolase-type TIM barrel RY45_09240 IPR000014 PAS domain RY45_09240 IPR000160 GGDEF domain RY45_09240 IPR001610 PAC motif RY45_09240 IPR001633 EAL domain RY45_09240 IPR003018 GAF domain RY45_09240 IPR013767 PAS fold RY45_09240 IPR029016 GAF domain-like RY45_09240 IPR029787 Nucleotide cyclase RY45_09240 IPR035919 RY45_09240 RY45_09240 IPR035965 RY45_09240 RY45_09245 IPR001763 Rhodanese-like domain RY45_09245 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_09245 IPR016156 FAD/NAD-linked reductase, dimerisation domain RY45_09245 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_09245 IPR036188 RY45_09245 RY45_09245 IPR036873 RY45_09245 RY45_09250 IPR001599 Alpha-2-macroglobulin RY45_09250 IPR002890 Alpha-2-macroglobulin, N-terminal RY45_09250 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RY45_09250 IPR011625 Alpha-2-macroglobulin, N-terminal 2 RY45_09250 IPR026284 Alpha-2-macroglobulin domain protein, bacteria RY45_09255 IPR001264 Glycosyl transferase, family 51 RY45_09255 IPR001460 Penicillin-binding protein, transpeptidase RY45_09255 IPR009647 Penicillin-binding, C-terminal RY45_09255 IPR011815 Penicillin-binding protein 1C RY45_09255 IPR012338 Beta-lactamase/transpeptidase-like RY45_09255 IPR023346 Lysozyme-like domain RY45_09255 IPR036950 RY45_09255 RY45_09265 IPR003720 tRNA sulfurtransferase ThiI RY45_09265 IPR004114 THUMP RY45_09265 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_09265 IPR020536 Thil, AANH domain RY45_09265 IPR026340 Thiazole biosynthesis domain RY45_09265 IPR036873 RY45_09265 RY45_09275 IPR005115 Uncharacterised domain UPF0126 RY45_09280 IPR001029 Flagellin, D0/D1 domain RY45_09280 IPR001492 Flagellin RY45_09285 IPR001029 Flagellin, D0/D1 domain RY45_09285 IPR001492 Flagellin RY45_09290 IPR005186 Flagellar protein FlaG protein RY45_09290 IPR035924 RY45_09290 RY45_09295 IPR003481 Flagellar hook-associated protein 2, N-terminal RY45_09295 IPR010809 Flagellar hook-associated 2, C-terminal RY45_09295 IPR010810 Flagellin hook, IN motif RY45_09300 IPR003713 Flagellar protein FliS RY45_09300 IPR036584 RY45_09300 RY45_09310 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like RY45_09315 IPR002491 ABC transporter periplasmic binding domain RY45_09320 IPR004485 Cobalamin biosynthesis CobD/CbiB RY45_09325 IPR000845 Nucleoside phosphorylase domain RY45_09325 IPR010049 MTA/SAH nucleosidase RY45_09325 IPR035994 RY45_09325 RY45_09330 IPR001638 Extracellular solute-binding protein, family 3 RY45_09335 IPR003689 Zinc/iron permease RY45_09340 IPR003660 HAMP linker domain RY45_09340 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_09340 IPR024478 4HB MCP domain RY45_09345 IPR000760 Inositol monophosphatase RY45_09345 IPR020550 Inositol monophosphatase, conserved site RY45_09345 IPR022337 Inositol monophosphatase, SuhB RY45_09355 IPR004045 Glutathione S-transferase, N-terminal RY45_09355 IPR004046 Glutathione S-transferase, C-terminal RY45_09355 IPR036249 RY45_09355 RY45_09355 IPR036282 RY45_09355 RY45_09360 IPR004812 Drug resistance transporter Bcr/CmlA subfamily RY45_09360 IPR011701 Major facilitator superfamily RY45_09360 IPR036259 RY45_09360 RY45_09365 IPR007838 Cell division protein ZapA-like RY45_09365 IPR036192 RY45_09365 RY45_09370 IPR011978 Uncharacterised protein family UPF0149 RY45_09370 IPR036255 RY45_09370 RY45_09375 IPR002938 Monooxygenase, FAD-binding RY45_09375 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 RY45_09375 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase RY45_09375 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site RY45_09375 IPR036188 RY45_09375 RY45_09380 IPR002938 Monooxygenase, FAD-binding RY45_09380 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 RY45_09380 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site RY45_09380 IPR036188 RY45_09380 RY45_09385 IPR006222 Glycine cleavage T-protein, N-terminal RY45_09385 IPR006223 Glycine cleavage system T protein RY45_09385 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain RY45_09385 IPR022903 Glycine cleavage system T protein, bacteria RY45_09385 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RY45_09385 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA RY45_09385 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RY45_09390 IPR002930 Glycine cleavage system H-protein RY45_09390 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RY45_09390 IPR011053 Single hybrid motif RY45_09390 IPR017453 Glycine cleavage system H-protein, subgroup RY45_09390 IPR033753 RY45_09390 RY45_09395 IPR003437 Glycine cleavage system P protein, homodimeric RY45_09395 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_09395 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_09395 IPR015424 Pyridoxal phosphate-dependent transferase RY45_09395 IPR020581 Glycine cleavage system P protein RY45_09400 IPR005524 Protein of unknown function DUF318, transmembrane RY45_09405 IPR001845 HTH ArsR-type DNA-binding domain RY45_09405 IPR036388 RY45_09405 RY45_09405 IPR036390 RY45_09405 RY45_09410 IPR001845 HTH ArsR-type DNA-binding domain RY45_09410 IPR036388 RY45_09410 RY45_09410 IPR036390 RY45_09410 RY45_09415 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD RY45_09420 IPR003593 AAA+ ATPase domain RY45_09420 IPR016300 Arsenical pump ATPase, ArsA/GET3 RY45_09420 IPR025723 Anion-transporting ATPase-like domain RY45_09420 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09420 IPR027541 Arsenical pump-driving ATPase RY45_09425 IPR002657 Bile acid:sodium symporter RY45_09425 IPR004706 Arsenical-resistance protein ACR3 RY45_09425 IPR038770 RY45_09425 RY45_09430 IPR006659 Arsenate reductase RY45_09430 IPR006660 Arsenate reductase-like RY45_09430 IPR036249 RY45_09430 RY45_09435 IPR013216 Methyltransferase type 11 RY45_09435 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_09445 IPR011701 Major facilitator superfamily RY45_09445 IPR036259 RY45_09445 RY45_09450 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II RY45_09450 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site RY45_09450 IPR012081 Alkyl hydroperoxide reductase subunit F RY45_09450 IPR012336 Thioredoxin-like fold RY45_09450 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_09450 IPR036188 RY45_09450 RY45_09450 IPR036249 RY45_09450 RY45_09455 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RY45_09455 IPR017559 Alkyl hydroperoxide reductase subunit C RY45_09455 IPR019479 Peroxiredoxin, C-terminal RY45_09455 IPR024706 Peroxiredoxin, AhpC-type RY45_09455 IPR036249 RY45_09455 RY45_09460 IPR000644 CBS domain RY45_09465 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA RY45_09465 IPR036100 RY45_09465 RY45_09470 IPR002616 tRNA-guanine(15) transglycosylase-like RY45_09470 IPR004803 Queuine tRNA-ribosyltransferase RY45_09470 IPR036511 RY45_09470 RY45_09475 IPR003849 Preprotein translocase YajC RY45_09480 IPR001036 Acriflavin resistance protein RY45_09480 IPR005791 Protein translocase subunit SecD RY45_09480 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_09480 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RY45_09480 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RY45_09480 IPR027398 SecD export protein N-terminal TM domain RY45_09485 IPR005665 Protein-export membrane protein SecF, bacterial RY45_09485 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_09485 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RY45_09485 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RY45_09490 IPR001763 Rhodanese-like domain RY45_09490 IPR036873 RY45_09490 RY45_09495 IPR001440 Tetratricopeptide TPR1 RY45_09495 IPR011990 Tetratricopeptide-like helical domain RY45_09495 IPR019734 Tetratricopeptide repeat RY45_09495 IPR023605 Lipoprotein NlpI RY45_09500 IPR001539 Peptidase U32 RY45_09505 IPR001539 Peptidase U32 RY45_09510 IPR003033 SCP2 sterol-binding domain RY45_09510 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT RY45_09510 IPR036527 RY45_09510 RY45_09520 IPR001537 tRNA/rRNA methyltransferase, SpoU type RY45_09520 IPR004384 RNA methyltransferase TrmH, group 1 RY45_09520 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_09520 IPR029028 Alpha/beta knot methyltransferases RY45_09525 IPR000944 Transcription regulator Rrf2-like RY45_09525 IPR010242 Transcription factor HTH, IscR RY45_09525 IPR030489 RY45_09525 RY45_09525 IPR036388 RY45_09525 RY45_09525 IPR036390 RY45_09525 RY45_09530 IPR000192 Aminotransferase class V domain RY45_09530 IPR010240 Cysteine desulfurase RY45_09530 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_09530 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_09530 IPR015424 Pyridoxal phosphate-dependent transferase RY45_09530 IPR016454 Cysteine desulfurase, NifS RY45_09530 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site RY45_09535 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal RY45_09535 IPR011339 ISC system FeS cluster assembly, IscU scaffold RY45_09540 IPR000361 FeS cluster biogenesis RY45_09540 IPR011302 ISC system FeS cluster assembly, IscA scaffold RY45_09540 IPR016092 FeS cluster insertion protein RY45_09540 IPR017870 FeS cluster insertion, C-terminal, conserved site RY45_09540 IPR035903 RY45_09540 RY45_09545 IPR001623 DnaJ domain RY45_09545 IPR004640 Co-chaperone Hsc20 RY45_09545 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain RY45_09545 IPR036386 RY45_09545 RY45_09545 IPR036869 RY45_09545 RY45_09550 IPR010236 ISC system FeS cluster assembly, HscA chaperone RY45_09550 IPR013126 Heat shock protein 70 family RY45_09550 IPR018181 Heat shock protein 70, conserved site RY45_09550 IPR029047 Heat shock protein 70kD, peptide-binding domain RY45_09550 IPR029048 Heat shock protein 70kD, C-terminal domain RY45_09555 IPR001041 2Fe-2S ferredoxin-type domain RY45_09555 IPR001055 Adrenodoxin RY45_09555 IPR011536 Ferredoxin, 2Fe-2S type RY45_09555 IPR012675 Beta-grasp domain RY45_09555 IPR018298 Adrenodoxin, iron-sulphur binding site RY45_09555 IPR036010 RY45_09555 RY45_09560 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal RY45_09560 IPR008330 Peptidase M17, peptidase B RY45_09560 IPR011356 Leucine aminopeptidase/peptidase B RY45_09565 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal RY45_09565 IPR008330 Peptidase M17, peptidase B RY45_09565 IPR011356 Leucine aminopeptidase/peptidase B RY45_09570 IPR001564 Nucleoside diphosphate kinase RY45_09570 IPR023005 Nucleoside diphosphate kinase, active site RY45_09570 IPR034907 RY45_09570 RY45_09570 IPR036850 RY45_09570 RY45_09575 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr RY45_09575 IPR007197 Radical SAM RY45_09575 IPR013785 Aldolase-type TIM barrel RY45_09575 IPR027492 Dual-specificity RNA methyltransferase RlmN RY45_09580 IPR011990 Tetratricopeptide-like helical domain RY45_09580 IPR013360 Pilus biogenesis/stability type IV, PilW RY45_09580 IPR019734 Tetratricopeptide repeat RY45_09585 IPR001387 Cro/C1-type helix-turn-helix domain RY45_09585 IPR010982 Lambda repressor-like, DNA-binding domain RY45_09585 IPR025194 Domain of unknown function DUF4115 RY45_09590 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type RY45_09590 IPR011005 Dihydropteroate synthase-like RY45_09590 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial RY45_09590 IPR036849 RY45_09590 RY45_09595 IPR004154 Anticodon-binding RY45_09595 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit RY45_09595 IPR015807 Histidine-tRNA ligase RY45_09595 IPR036621 RY45_09595 RY45_09600 IPR011990 Tetratricopeptide-like helical domain RY45_09600 IPR018704 Domain of unknown function DUF09976 RY45_09600 IPR026039 Uncharacterised protein family UPF0070 RY45_09605 IPR002372 Pyrrolo-quinoline quinone repeat RY45_09605 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily RY45_09605 IPR015943 WD40/YVTN repeat-like-containing domain RY45_09605 IPR017687 Outer membrane protein assembly factor BamB RY45_09605 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RY45_09605 IPR025666 RY45_09605 RY45_09610 IPR005225 Small GTP-binding protein domain RY45_09610 IPR006073 GTP binding domain RY45_09610 IPR015946 K homology domain-like, alpha/beta RY45_09610 IPR016484 GTP-binding protein EngA RY45_09610 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09610 IPR032859 RY45_09610 RY45_09615 IPR010807 Protein of unknown function DUF1407 RY45_09615 IPR029037 YfgJ-like RY45_09620 IPR000189 Prokaryotic transglycosylase, active site RY45_09620 IPR001638 Extracellular solute-binding protein, family 3 RY45_09620 IPR008258 Lytic transglycosylase-like SLT domain RY45_09620 IPR023346 Lysozyme-like domain RY45_09620 IPR023703 Membrane-bound lytic murein transglycosylase F RY45_09625 IPR010073 Phosphoribosylformylglycinamidine synthase RY45_09625 IPR010918 AIR synthase-related protein, C-terminal domain RY45_09625 IPR029062 Class I glutamine amidotransferase-like RY45_09625 IPR036604 RY45_09625 RY45_09625 IPR036676 RY45_09625 RY45_09625 IPR036921 RY45_09625 RY45_09630 IPR000014 PAS domain RY45_09630 IPR003607 HD/PDEase domain RY45_09630 IPR013656 PAS fold-4 RY45_09630 IPR029016 GAF domain-like RY45_09630 IPR035965 RY45_09630 RY45_09635 IPR000014 PAS domain RY45_09635 IPR003607 HD/PDEase domain RY45_09635 IPR013656 PAS fold-4 RY45_09635 IPR035965 RY45_09635 RY45_09640 IPR013702 FIST domain, N-terminal RY45_09640 IPR019494 FIST C domain RY45_09645 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase RY45_09645 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 RY45_09650 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase RY45_09650 IPR003918 NADH:ubiquinone oxidoreductase RY45_09650 IPR010227 NADH-quinone oxidoreductase, chain M/4 RY45_09655 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal RY45_09655 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase RY45_09655 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 RY45_09655 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup RY45_09660 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K RY45_09660 IPR039428 RY45_09660 RY45_09665 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 RY45_09670 IPR010226 NADH-quinone oxidoreductase, chain I RY45_09670 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_09670 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_09675 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H RY45_09675 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site RY45_09680 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site RY45_09680 IPR006656 Molybdopterin oxidoreductase RY45_09680 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RY45_09680 IPR009010 Aspartate decarboxylase-like domain RY45_09680 IPR010228 NADH:ubiquinone oxidoreductase, subunit G RY45_09680 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding RY45_09680 IPR036010 RY45_09680 RY45_09685 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site RY45_09685 IPR011537 NADH ubiquinone oxidoreductase, F subunit RY45_09685 IPR011538 NADH:ubiquinone oxidoreductase, 51kDa subunit RY45_09685 IPR019554 Soluble ligand binding domain RY45_09685 IPR019575 NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding RY45_09685 IPR037207 RY45_09685 RY45_09685 IPR037225 RY45_09685 RY45_09690 IPR002023 NADH-quinone oxidoreductase subunit E-like RY45_09690 IPR036249 RY45_09690 RY45_09695 IPR001135 NADH-quinone oxidoreductase, subunit D RY45_09695 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit RY45_09695 IPR010218 NADH dehydrogenase, subunit C RY45_09695 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site RY45_09695 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H RY45_09695 IPR023062 NADH dehydrogenase, subunit CD RY45_09695 IPR029014 NiFe hydrogenase-like RY45_09695 IPR037232 RY45_09695 RY45_09695 IPR038290 RY45_09695 RY45_09700 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit RY45_09700 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit RY45_09705 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 RY45_09705 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid RY45_09705 IPR038430 RY45_09705 RY45_09710 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_09710 IPR025713 Motility protein B, N-terminal domain RY45_09710 IPR036737 RY45_09710 RY45_09715 IPR002898 MotA/TolQ/ExbB proton channel RY45_09725 IPR007621 TPM domain RY45_09730 IPR007621 TPM domain RY45_09735 IPR007156 LemA RY45_09735 IPR023353 LemA-like domain RY45_09740 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase RY45_09740 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RY45_09750 IPR000504 RNA recognition motif domain RY45_09750 IPR012677 Nucleotide-binding, alpha-beta plait RY45_09750 IPR035979 RY45_09750 RY45_09755 IPR020471 Aldo/keto reductase subgroup RY45_09755 IPR023210 NADP-dependent oxidoreductase domain RY45_09755 IPR036812 RY45_09755 RY45_09760 IPR001387 Cro/C1-type helix-turn-helix domain RY45_09760 IPR010982 Lambda repressor-like, DNA-binding domain RY45_09765 IPR036291 RY45_09765 RY45_09770 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase RY45_09770 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_09770 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_09770 IPR015424 Pyridoxal phosphate-dependent transferase RY45_09770 IPR023603 Threonine aldolase RY45_09775 IPR000014 PAS domain RY45_09775 IPR013656 PAS fold-4 RY45_09775 IPR035965 RY45_09775 RY45_09780 IPR001789 Signal transduction response regulator, receiver domain RY45_09780 IPR011006 CheY-like superfamily RY45_09780 IPR028976 CheC-like domain RY45_09785 IPR000847 Transcription regulator HTH, LysR RY45_09785 IPR005119 LysR, substrate-binding RY45_09785 IPR036388 RY45_09785 RY45_09785 IPR036390 RY45_09785 RY45_09790 IPR021367 Protein of unknown function DUF2982 RY45_09795 IPR000160 GGDEF domain RY45_09795 IPR001633 EAL domain RY45_09795 IPR029787 Nucleotide cyclase RY45_09795 IPR035919 RY45_09795 RY45_09800 IPR000415 Nitroreductase-like RY45_09800 IPR016446 Flavin oxidoreductase Frp family RY45_09800 IPR029479 Nitroreductase RY45_09810 IPR010393 Protein of unknown function DUF991 RY45_09810 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_09815 IPR011701 Major facilitator superfamily RY45_09815 IPR036259 RY45_09815 RY45_09820 IPR000847 Transcription regulator HTH, LysR RY45_09820 IPR005119 LysR, substrate-binding RY45_09820 IPR036388 RY45_09820 RY45_09820 IPR036390 RY45_09820 RY45_09825 IPR000847 Transcription regulator HTH, LysR RY45_09825 IPR005119 LysR, substrate-binding RY45_09825 IPR036388 RY45_09825 RY45_09825 IPR036390 RY45_09825 RY45_09830 IPR000926 GTP cyclohydrolase II, RibA RY45_09830 IPR032677 RY45_09830 RY45_09830 IPR036144 RY45_09830 RY45_09835 IPR003136 Cytidylate kinase RY45_09835 IPR011994 Cytidylate kinase domain RY45_09835 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09840 IPR000110 Ribosomal protein S1 RY45_09840 IPR003029 Ribosomal protein S1, RNA-binding domain RY45_09840 IPR012340 Nucleic acid-binding, OB-fold RY45_09840 IPR022967 RNA-binding domain, S1 RY45_09845 IPR000119 Histone-like bacterial DNA-binding protein RY45_09845 IPR005685 Integration host factor, beta subunit RY45_09845 IPR010992 Integration host factor (IHF)-like DNA-binding domain RY45_09845 IPR020816 Histone-like DNA-binding protein, conserved site RY45_09850 IPR010445 Protein of unknown function DUF1049 RY45_09850 IPR032906 RY45_09850 RY45_09855 IPR011990 Tetratricopeptide-like helical domain RY45_09855 IPR019734 Tetratricopeptide repeat RY45_09855 IPR030865 RY45_09855 RY45_09860 IPR001754 Orotidine 5'-phosphate decarboxylase domain RY45_09860 IPR011060 Ribulose-phosphate binding barrel RY45_09860 IPR013785 Aldolase-type TIM barrel RY45_09860 IPR014732 Orotidine 5'-phosphate decarboxylase RY45_09860 IPR018089 Orotidine 5'-phosphate decarboxylase, active site RY45_09865 IPR022764 Peptidase S54, rhomboid domain RY45_09865 IPR023826 Rhomboid-like serine protease, proteobacteria RY45_09865 IPR035952 RY45_09865 RY45_09870 IPR005636 DTW RY45_09875 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_09875 IPR018317 Queuosine biosynthesis protein QueC RY45_09880 IPR007197 Radical SAM RY45_09880 IPR013785 Aldolase-type TIM barrel RY45_09880 IPR024924 7-carboxy-7-deazaguanine synthase-like RY45_09880 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria RY45_09885 IPR024530 Protein of unknown function DUF3820 RY45_09890 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like RY45_09890 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type RY45_09890 IPR036451 RY45_09890 RY45_09895 IPR001801 Histone-like protein H-NS RY45_09895 IPR027444 Histone-like protein H-NS, C-terminal domain RY45_09895 IPR027454 Histone-like protein H-NS family, oligomerisation domain RY45_09895 IPR037150 RY45_09895 RY45_09900 IPR018461 Na+/H+ antiporter, NhaC-like RY45_09905 IPR001267 Thymidine kinase RY45_09905 IPR020633 Thymidine kinase, conserved site RY45_09905 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09910 IPR012548 Protein of unknown function DUF1704 RY45_09910 IPR012656 Conserved hypothetical protein CHP02421, QEGLA RY45_09915 IPR019660 Putative sensory transduction regulator YbjN RY45_09925 IPR008514 Type VI secretion system effector, Hcp RY45_09925 IPR036624 RY45_09925 RY45_09930 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RY45_09930 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RY45_09930 IPR037026 RY45_09930 RY45_09940 IPR024445 Transposase, ISXO2-like RY45_09970 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase RY45_09970 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RY45_09970 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RY45_09970 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site RY45_09970 IPR036291 RY45_09970 RY45_09975 IPR002059 Cold-shock protein, DNA-binding RY45_09975 IPR011129 Cold shock protein RY45_09975 IPR012156 Cold shock, CspA RY45_09975 IPR012340 Nucleic acid-binding, OB-fold RY45_09975 IPR012751 CspD, cold shock RY45_09975 IPR019844 Cold-shock conserved site RY45_09980 IPR003769 Adaptor protein ClpS, core RY45_09980 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RY45_09980 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RY45_09985 IPR001270 ClpA/B family RY45_09985 IPR003593 AAA+ ATPase domain RY45_09985 IPR003959 ATPase, AAA-type, core RY45_09985 IPR004176 Clp, N-terminal RY45_09985 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA RY45_09985 IPR018368 ClpA/B, conserved site 1 RY45_09985 IPR019489 Clp ATPase, C-terminal RY45_09985 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09985 IPR028299 ClpA/B, conserved site 2 RY45_09985 IPR036628 RY45_09985 RY45_09990 IPR004368 Translation initiation factor IF-1 RY45_09990 IPR006196 RNA-binding domain, S1, IF1 type RY45_09990 IPR012340 Nucleic acid-binding, OB-fold RY45_09990 IPR022967 RNA-binding domain, S1 RY45_09995 IPR007471 Arginine-tRNA-protein transferase, N-terminal RY45_09995 IPR007472 Arginine-tRNA-protein transferase, C-terminal RY45_09995 IPR016181 Acyl-CoA N-acyltransferase RY45_09995 IPR017138 Arginine-tRNA-protein transferase, predicted, prokaryotic RY45_10000 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase RY45_10000 IPR016181 Acyl-CoA N-acyltransferase RY45_10005 IPR008816 Glycine zipper 2TM domain RY45_10010 IPR000160 GGDEF domain RY45_10010 IPR001789 Signal transduction response regulator, receiver domain RY45_10010 IPR011006 CheY-like superfamily RY45_10010 IPR029787 Nucleotide cyclase RY45_10015 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II RY45_10015 IPR005982 Thioredoxin reductase RY45_10015 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site RY45_10015 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_10015 IPR036188 RY45_10015 RY45_10020 IPR000485 AsnC-type HTH domain RY45_10020 IPR011008 Dimeric alpha-beta barrel RY45_10020 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RY45_10020 IPR019887 Transcription regulator AsnC-type, C-terminal RY45_10020 IPR019888 Transcription regulator AsnC-type RY45_10020 IPR036388 RY45_10020 RY45_10020 IPR036390 RY45_10020 RY45_10025 IPR002543 FtsK domain RY45_10025 IPR018541 FtsK gamma domain RY45_10025 IPR025199 Domain of unknown function DUF4117 RY45_10025 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10025 IPR036388 RY45_10025 RY45_10025 IPR036390 RY45_10025 RY45_10030 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RY45_10030 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria RY45_10030 IPR029046 Lipoprotein localisation LolA/LolB/LppX RY45_10035 IPR003593 AAA+ ATPase domain RY45_10035 IPR003959 ATPase, AAA-type, core RY45_10035 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RY45_10035 IPR021886 MgsA AAA+ ATPase C-terminal RY45_10035 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10035 IPR032423 RY45_10035 RY45_10045 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain RY45_10045 IPR002317 Serine-tRNA ligase, type1 RY45_10045 IPR010978 tRNA-binding arm RY45_10045 IPR015866 Serine-tRNA synthetase, type1, N-terminal RY45_10050 IPR003825 Colicin V production, CvpA RY45_10055 IPR000836 Phosphoribosyltransferase domain RY45_10055 IPR005854 Amidophosphoribosyl transferase RY45_10055 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_10055 IPR029057 Phosphoribosyltransferase-like RY45_10060 IPR009078 Ferritin-like superfamily RY45_10060 IPR010386 tRNA-hydroxylase MiaE RY45_10060 IPR012347 Ferritin-related RY45_10065 IPR003439 ABC transporter-like RY45_10065 IPR003593 AAA+ ATPase domain RY45_10065 IPR017871 ABC transporter, conserved site RY45_10065 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10070 IPR003439 ABC transporter-like RY45_10070 IPR003593 AAA+ ATPase domain RY45_10070 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RY45_10070 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10075 IPR000515 MetI-like domain RY45_10075 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RY45_10075 IPR035906 RY45_10075 RY45_10080 IPR000515 MetI-like domain RY45_10080 IPR035906 RY45_10080 RY45_10085 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_10085 IPR030678 RY45_10085 RY45_10090 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_10090 IPR002197 DNA binding HTH domain, Fis-type RY45_10090 IPR003593 AAA+ ATPase domain RY45_10090 IPR009057 Homeodomain-like RY45_10090 IPR014317 Transcription activator PspF RY45_10090 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_10090 IPR025944 Sigma-54 interaction domain, conserved site RY45_10090 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10095 IPR007157 PspA/IM30 RY45_10095 IPR014319 Phage shock protein, PspA RY45_10100 IPR009554 Phage shock protein, PspB RY45_10105 IPR007168 Phage shock protein, PspC, N-terminal RY45_10105 IPR014320 Phage shock protein, PspC RY45_10110 IPR007413 Protein of unknown function DUF463, YcjX-like protein RY45_10110 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10115 IPR006507 Uncharacterised protein family UPF0283 RY45_10115 IPR021147 Protein of unknown function DUF697 RY45_10120 IPR005960 Phenylalanine-4-hydroxylase, monomeric form RY45_10120 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site RY45_10120 IPR019774 Aromatic amino acid hydroxylase, C-terminal RY45_10120 IPR036329 RY45_10120 RY45_10120 IPR036951 RY45_10120 RY45_10125 IPR001533 Transcriptional coactivator/pterin dehydratase RY45_10125 IPR036428 RY45_10125 RY45_10130 IPR000014 PAS domain RY45_10130 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_10130 IPR003593 AAA+ ATPase domain RY45_10130 IPR009057 Homeodomain-like RY45_10130 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_10130 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_10130 IPR025944 Sigma-54 interaction domain, conserved site RY45_10130 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10130 IPR030828 RY45_10130 RY45_10130 IPR035965 RY45_10130 RY45_10135 IPR025293 Protein of unknown function DUF4154 RY45_10140 IPR000160 GGDEF domain RY45_10140 IPR003660 HAMP linker domain RY45_10140 IPR029787 Nucleotide cyclase RY45_10140 IPR033417 RY45_10140 RY45_10145 IPR006664 Outer membrane protein, bacterial RY45_10145 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_10145 IPR036737 RY45_10145 RY45_10150 IPR005496 Integral membrane protein TerC RY45_10155 IPR002504 Inorganic polyphosphate/ATP-NAD kinase RY45_10155 IPR011386 Putative ATP-NAD kinase RY45_10160 IPR014987 Uncharacterised protein family YfcL RY45_10165 IPR000873 AMP-dependent synthetase/ligase RY45_10165 IPR020845 AMP-binding, conserved site RY45_10170 IPR002125 CMP/dCMP deaminase, zinc-binding RY45_10170 IPR006263 Cytidine deaminase, homodimeric RY45_10170 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain RY45_10170 IPR016192 APOBEC/CMP deaminase, zinc-binding RY45_10170 IPR016193 Cytidine deaminase-like RY45_10170 IPR020797 Cytidine deaminase, bacteria RY45_10175 IPR007300 CidB/LrgB family RY45_10180 IPR005538 LrgA/CidA family RY45_10185 IPR002252 Glycoside hydrolase, family 36 RY45_10185 IPR013785 Aldolase-type TIM barrel RY45_10185 IPR017853 Glycoside hydrolase, superfamily RY45_10195 IPR012337 Ribonuclease H-like domain RY45_10195 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_10195 IPR013620 Exonuclease C-terminal RY45_10195 IPR023607 Exodeoxyribonuclease I RY45_10195 IPR036397 RY45_10195 RY45_10195 IPR038649 RY45_10195 RY45_10200 IPR003762 L-arabinose isomerase RY45_10200 IPR004216 L-fucose/L-arabinose isomerase, C-terminal RY45_10200 IPR009015 L-fucose isomerase, N-terminal/central domain RY45_10200 IPR024664 L-arabinose isomerase, C-terminal RY45_10200 IPR038583 RY45_10200 RY45_10205 IPR001303 Class II aldolase/adducin N-terminal RY45_10205 IPR036409 RY45_10205 RY45_10210 IPR000577 RY45_10210 RY45_10210 IPR005929 L-ribulokinase RY45_10210 IPR018485 Carbohydrate kinase, FGGY, C-terminal RY45_10215 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_10215 IPR026266 L-arabinose-binding periplasmic protein RY45_10215 IPR028082 Periplasmic binding protein-like I RY45_10220 IPR003439 ABC transporter-like RY45_10220 IPR003593 AAA+ ATPase domain RY45_10220 IPR017871 ABC transporter, conserved site RY45_10220 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10225 IPR001851 ABC transporter, permease RY45_10230 IPR003313 AraC-type arabinose-binding/dimerisation domain RY45_10230 IPR009057 Homeodomain-like RY45_10230 IPR018060 DNA binding HTH domain, AraC-type RY45_10230 IPR018062 HTH domain AraC-type, conserved site RY45_10230 IPR020449 Transcription regulator HTH, AraC- type RY45_10230 IPR037923 RY45_10230 RY45_10235 IPR000847 Transcription regulator HTH, LysR RY45_10235 IPR005119 LysR, substrate-binding RY45_10235 IPR036388 RY45_10235 RY45_10235 IPR036390 RY45_10235 RY45_10240 IPR003829 Pirin, N-terminal domain RY45_10240 IPR008778 Pirin, C-terminal domain RY45_10240 IPR011051 RmlC-like cupin domain RY45_10240 IPR012093 Pirin RY45_10240 IPR014710 RmlC-like jelly roll fold RY45_10245 IPR000473 Ribosomal protein L36 RY45_10245 IPR035977 RY45_10245 RY45_10250 IPR002150 Ribosomal protein L31 RY45_10250 IPR027493 Ribosomal protein L31 type B RY45_10250 IPR034704 RY45_10250 RY45_10255 IPR010391 DNA damage-inducible protein DinI-like RY45_10255 IPR036687 RY45_10255 RY45_10260 IPR021323 Protein of unknown function DUF2927 RY45_10265 IPR002725 Protein of unknown function DUF45 RY45_10275 IPR004843 Calcineurin-like phosphoesterase domain, apaH type RY45_10275 IPR006146 5'-Nucleotidase, conserved site RY45_10275 IPR006179 5'-Nucleotidase/apyrase RY45_10275 IPR008334 5'-Nucleotidase, C-terminal RY45_10275 IPR029052 Metallo-dependent phosphatase-like RY45_10275 IPR036907 RY45_10275 RY45_10280 IPR004669 C4-dicarboxylate anaerobic carrier RY45_10280 IPR018385 C4-dicarboxylate anaerobic carrier-like RY45_10285 IPR010321 Protein of unknown function DUF922 RY45_10290 IPR006076 FAD dependent oxidoreductase RY45_10290 IPR008471 MnmC-like methyltransferase RY45_10290 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal RY45_10290 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC RY45_10290 IPR036188 RY45_10290 RY45_10295 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_10295 IPR014031 Beta-ketoacyl synthase, C-terminal RY45_10295 IPR016039 Thiolase-like RY45_10295 IPR018201 Beta-ketoacyl synthase, active site RY45_10295 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RY45_10300 IPR000182 GNAT domain RY45_10300 IPR016181 Acyl-CoA N-acyltransferase RY45_10305 IPR025485 Domain of unknown function DUF4377 RY45_10310 IPR002020 Citrate synthase-like RY45_10310 IPR010953 Citrate synthase, type I RY45_10310 IPR016142 Citrate synthase-like, large alpha subdomain RY45_10310 IPR016143 Citrate synthase-like, small alpha subdomain RY45_10310 IPR019810 Citrate synthase active site RY45_10310 IPR024176 Citrate synthase, bacterial-type RY45_10310 IPR036969 RY45_10310 RY45_10315 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit RY45_10315 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit RY45_10315 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site RY45_10315 IPR034804 RY45_10315 RY45_10320 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit RY45_10320 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor RY45_10320 IPR034804 RY45_10320 RY45_10325 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site RY45_10325 IPR003953 FAD binding domain RY45_10325 IPR011281 Succinate dehydrogenase, flavoprotein subunit RY45_10325 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit RY45_10325 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal RY45_10325 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RY45_10325 IPR036188 RY45_10325 RY45_10325 IPR037099 RY45_10325 RY45_10330 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein RY45_10330 IPR009051 Alpha-helical ferredoxin RY45_10330 IPR012675 Beta-grasp domain RY45_10330 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_10330 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal RY45_10330 IPR036010 RY45_10330 RY45_10335 IPR001017 Dehydrogenase, E1 component RY45_10335 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_10335 IPR011603 2-oxoglutarate dehydrogenase E1 component RY45_10335 IPR029061 Thiamin diphosphate-binding fold RY45_10335 IPR031717 RY45_10335 RY45_10335 IPR032106 RY45_10335 RY45_10340 IPR000089 Biotin/lipoyl attachment RY45_10340 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain RY45_10340 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RY45_10340 IPR004167 E3 binding RY45_10340 IPR006255 Dihydrolipoamide succinyltransferase RY45_10340 IPR011053 Single hybrid motif RY45_10340 IPR023213 Chloramphenicol acetyltransferase-like domain RY45_10340 IPR036625 RY45_10340 RY45_10345 IPR005809 Succinyl-CoA synthetase, beta subunit RY45_10345 IPR005811 ATP-citrate lyase/succinyl-CoA ligase RY45_10345 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type RY45_10345 IPR013815 ATP-grasp fold, subdomain 1 RY45_10345 IPR016102 Succinyl-CoA synthetase-like RY45_10345 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site RY45_10350 IPR003781 CoA-binding RY45_10350 IPR005810 Succinyl-CoA ligase, alpha subunit RY45_10350 IPR005811 ATP-citrate lyase/succinyl-CoA ligase RY45_10350 IPR016102 Succinyl-CoA synthetase-like RY45_10350 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RY45_10350 IPR033847 RY45_10350 RY45_10350 IPR036291 RY45_10350 RY45_10360 IPR005358 Putative zinc- or iron-chelating domain containing protein RY45_10360 IPR008228 Uncharacterised conserved protein UCP006173 RY45_10365 IPR006076 FAD dependent oxidoreductase RY45_10365 IPR017715 Putative aminophosphonate oxidoreductase RY45_10365 IPR036188 RY45_10365 RY45_10370 IPR000515 MetI-like domain RY45_10370 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative RY45_10370 IPR035906 RY45_10370 RY45_10375 IPR003439 ABC transporter-like RY45_10375 IPR003593 AAA+ ATPase domain RY45_10375 IPR008995 Molybdate/tungstate binding, C-terminal RY45_10375 IPR013611 Transport-associated OB, type 2 RY45_10375 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 RY45_10375 IPR017871 ABC transporter, conserved site RY45_10375 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10380 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative RY45_10380 IPR026045 Ferric binding protein RY45_10385 IPR000524 Transcription regulator HTH, GntR RY45_10385 IPR011663 UbiC transcription regulator-associated RY45_10385 IPR017722 Transcription regulator PhnR RY45_10385 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RY45_10385 IPR036388 RY45_10385 RY45_10385 IPR036390 RY45_10385 RY45_10390 IPR000192 Aminotransferase class V domain RY45_10390 IPR012703 2-aminoethylphosphonate--pyruvate transaminase RY45_10390 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_10390 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_10390 IPR015424 Pyridoxal phosphate-dependent transferase RY45_10390 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase RY45_10395 IPR005814 Aminotransferase class-III RY45_10395 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_10395 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_10395 IPR015424 Pyridoxal phosphate-dependent transferase RY45_10400 IPR006323 Phosphonoacetaldehyde hydrolase RY45_10400 IPR006439 HAD hydrolase, subfamily IA RY45_10400 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_10400 IPR023214 HAD-like domain RY45_10400 IPR036412 RY45_10400 RY45_10405 IPR001150 Glycine radical domain RY45_10405 IPR004184 Pyruvate formate lyase domain RY45_10405 IPR005949 Formate acetyltransferase RY45_10405 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RY45_10410 IPR000292 Formate/nitrite transporter RY45_10410 IPR023271 Aquaporin-like RY45_10410 IPR023999 Formate transporter FocA, putative RY45_10410 IPR024002 Formate/nitrite transporter, conserved site RY45_10415 IPR003776 YcaO-like domain RY45_10420 IPR000390 Small multidrug resistance protein family RY45_10425 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site RY45_10425 IPR000534 Semialdehyde dehydrogenase, NAD-binding RY45_10425 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type RY45_10425 IPR012080 Aspartate-semialdehyde dehydrogenase RY45_10425 IPR012280 Semialdehyde dehydrogenase, dimerisation domain RY45_10425 IPR036291 RY45_10425 RY45_10430 IPR007863 Peptidase M16, C-terminal domain RY45_10430 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like RY45_10430 IPR011765 Peptidase M16, N-terminal RY45_10435 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme RY45_10435 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_10435 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_10435 IPR015424 Pyridoxal phosphate-dependent transferase RY45_10440 IPR005123 Oxoglutarate/iron-dependent dioxygenase RY45_10440 IPR026992 Non-haem dioxygenase N-terminal domain RY45_10440 IPR027443 Isopenicillin N synthase-like RY45_10445 IPR016040 NAD(P)-binding domain RY45_10445 IPR036291 RY45_10445 RY45_10450 IPR000847 Transcription regulator HTH, LysR RY45_10450 IPR005119 LysR, substrate-binding RY45_10450 IPR036388 RY45_10450 RY45_10450 IPR036390 RY45_10450 RY45_10455 IPR002347 Glucose/ribitol dehydrogenase RY45_10455 IPR011283 Acetoacetyl-CoA reductase RY45_10455 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_10455 IPR036291 RY45_10455 RY45_10460 IPR009057 Homeodomain-like RY45_10460 IPR010499 Bacterial transcription activator, effector binding RY45_10460 IPR011256 Regulatory factor, effector binding domain RY45_10460 IPR018060 DNA binding HTH domain, AraC-type RY45_10460 IPR018062 HTH domain AraC-type, conserved site RY45_10460 IPR020449 Transcription regulator HTH, AraC- type RY45_10460 IPR029442 GyrI-like small molecule binding domain RY45_10465 IPR000531 TonB-dependent receptor, beta-barrel RY45_10465 IPR010105 TonB-dependent siderophore receptor RY45_10465 IPR010916 TonB box, conserved site RY45_10465 IPR012910 TonB-dependent receptor, plug RY45_10465 IPR036942 RY45_10465 RY45_10465 IPR037066 RY45_10465 RY45_10470 IPR023998 Siderophore ferric iron reductase, AHA1954 family RY45_10470 IPR024726 Ferric iron reductase, C-terminal RY45_10475 IPR000847 Transcription regulator HTH, LysR RY45_10475 IPR005119 LysR, substrate-binding RY45_10475 IPR036388 RY45_10475 RY45_10475 IPR036390 RY45_10475 RY45_10480 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal RY45_10480 IPR006276 Cobalamin-independent methionine synthase RY45_10480 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal RY45_10480 IPR038071 RY45_10480 RY45_10485 IPR002201 Glycosyl transferase, family 9 RY45_10490 IPR000644 CBS domain RY45_10490 IPR007065 HPP RY45_10495 IPR011059 Metal-dependent hydrolase, composite domain RY45_10495 IPR013108 Amidohydrolase 3 RY45_10495 IPR032466 RY45_10495 RY45_10500 IPR001647 DNA-binding HTH domain, TetR-type RY45_10500 IPR009057 Homeodomain-like RY45_10505 IPR006076 FAD dependent oxidoreductase RY45_10505 IPR023080 D-amino acid dehydrogenase small subunit, DadA RY45_10505 IPR036188 RY45_10505 RY45_10510 IPR007357 Deoxyribodipyrimidine photolyase-related protein RY45_10510 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_10510 IPR036134 RY45_10510 RY45_10515 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase RY45_10515 IPR011166 Beta-eliminating lyase family RY45_10515 IPR013440 Tryptophanase RY45_10515 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_10515 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_10515 IPR015424 Pyridoxal phosphate-dependent transferase RY45_10520 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal RY45_10520 IPR012338 Beta-lactamase/transpeptidase-like RY45_10520 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A RY45_10525 IPR000086 NUDIX hydrolase domain RY45_10525 IPR015797 NUDIX hydrolase domain-like RY45_10525 IPR020084 NUDIX hydrolase, conserved site RY45_10530 IPR005616 Cytochrome C biogenesis protein CcmH RY45_10530 IPR011990 Tetratricopeptide-like helical domain RY45_10530 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF RY45_10530 IPR038297 RY45_10530 RY45_10535 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE RY45_10535 IPR013740 Redoxin RY45_10535 IPR036249 RY45_10535 RY45_10540 IPR002541 Cytochrome c assembly protein RY45_10540 IPR003567 Cytochrome c-type biogenesis protein RY45_10540 IPR003568 Cytochrome c-type biogenesis protein CcmF RY45_10540 IPR017563 Cytochrome c nitrate reductase biogenesis protein NrfE RY45_10540 IPR032523 RY45_10540 RY45_10545 IPR005614 NrfD family RY45_10545 IPR017566 NrfD RY45_10550 IPR017567 Cytochrome c nitrite reductase, Fe-S protein RY45_10550 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_10550 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_10555 IPR010177 Doubled CXXCH motif RY45_10555 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit RY45_10555 IPR023155 Cytochrome c-552/4 RY45_10555 IPR036280 RY45_10555 RY45_10560 IPR003321 Cytochrome c552 RY45_10560 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit RY45_10560 IPR036280 RY45_10560 RY45_10565 IPR011049 Serralysin-like metalloprotease, C-terminal RY45_10565 IPR013783 Immunoglobulin-like fold RY45_10565 IPR018511 Hemolysin-type calcium-binding conserved site RY45_10565 IPR019959 T1SS-143 repeat-containing domain RY45_10565 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass RY45_10570 IPR004017 Cysteine-rich domain RY45_10570 IPR009051 Alpha-helical ferredoxin RY45_10570 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit RY45_10570 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_10570 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_10575 IPR001613 Flavin amine oxidase RY45_10575 IPR003953 FAD binding domain RY45_10575 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit RY45_10575 IPR036188 RY45_10575 RY45_10580 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase RY45_10580 IPR006076 FAD dependent oxidoreductase RY45_10580 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_10580 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit RY45_10580 IPR036188 RY45_10580 RY45_10585 IPR004027 SEC-C motif RY45_10585 IPR032710 RY45_10585 RY45_10590 IPR003660 HAMP linker domain RY45_10590 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_10590 IPR004090 Chemotaxis methyl-accepting receptor RY45_10590 IPR033480 RY45_10590 RY45_10595 IPR000600 ROK RY45_10595 IPR036388 RY45_10595 RY45_10595 IPR036390 RY45_10595 RY45_10600 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_10600 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB RY45_10600 IPR029151 Periplasmic sensor domain-like RY45_10600 IPR033463 RY45_10600 RY45_10600 IPR035965 RY45_10600 RY45_10600 IPR036890 RY45_10600 RY45_10605 IPR001789 Signal transduction response regulator, receiver domain RY45_10605 IPR011006 CheY-like superfamily RY45_10605 IPR024187 Signal transduction response regulator, citrate/malate metabolism RY45_10605 IPR028141 Transcriptional regulator RY45_10605 IPR036390 RY45_10605 RY45_10610 IPR002823 Protein of unknown function DUF112, transmembrane RY45_10615 IPR009936 Protein of unknown function DUF1468 RY45_10620 IPR005064 Bordetella uptake gene RY45_10625 IPR001638 Extracellular solute-binding protein, family 3 RY45_10625 IPR008258 Lytic transglycosylase-like SLT domain RY45_10625 IPR023346 Lysozyme-like domain RY45_10630 IPR006037 Regulator of K+ conductance, C-terminal RY45_10630 IPR006512 YidE/YbjL duplication RY45_10630 IPR023017 Transport protein YbjL, putative RY45_10630 IPR036721 RY45_10630 RY45_10640 IPR001650 Helicase, C-terminal RY45_10640 IPR001943 UVR domain RY45_10640 IPR004807 UvrABC system, subunit B RY45_10640 IPR006935 Helicase/UvrB domain RY45_10640 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_10640 IPR024759 UvrB, YAD/RRR-motif-containing domain RY45_10640 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10640 IPR036876 RY45_10640 RY45_10645 IPR010652 Protein of unknown function DUF1232 RY45_10650 IPR032816 RY45_10650 RY45_10655 IPR003752 Disulphide bond formation protein DsbB/BdbC RY45_10655 IPR022920 Disulphide bond formation protein DsbB RY45_10655 IPR023380 Disulphide bond formation protein DsbB-like domain RY45_10660 IPR004671 Na+/H+ antiporter NhaB RY45_10665 IPR000524 Transcription regulator HTH, GntR RY45_10665 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_10665 IPR014178 Fatty acid response transcription factor FadR RY45_10665 IPR028374 FadR, C-terminal domain RY45_10665 IPR036388 RY45_10665 RY45_10665 IPR036390 RY45_10665 RY45_10670 IPR007390 Sporulation stage V, protein R RY45_10675 IPR006698 Thermus phage phiYS40, Orf56 RY45_10675 IPR036465 RY45_10675 RY45_10680 IPR010650 PrkA C-terminal domain RY45_10680 IPR013153 PrkA AAA domain RY45_10680 IPR016230 Serine-protein kinase, PrkA RY45_10680 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10685 IPR001650 Helicase, C-terminal RY45_10685 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site RY45_10685 IPR004589 DNA helicase, ATP-dependent, RecQ type RY45_10685 IPR011545 DEAD/DEAH box helicase domain RY45_10685 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_10685 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10685 IPR032284 RY45_10685 RY45_10685 IPR036388 RY45_10685 RY45_10690 IPR001991 Sodium:dicarboxylate symporter RY45_10690 IPR023025 Serine/threonine transporter SstT RY45_10690 IPR036458 RY45_10690 RY45_10695 IPR004694 Hydroxy amino acid transporter RY45_10695 IPR018227 Tryptophan/tyrosine permease RY45_10700 IPR000059 NUDIX hydrolase, NudL, conserved site RY45_10700 IPR000086 NUDIX hydrolase domain RY45_10700 IPR015797 NUDIX hydrolase domain-like RY45_10705 IPR005801 ADC synthase RY45_10705 IPR005802 Para-aminobenzoate synthase, component I RY45_10705 IPR006805 Anthranilate synthase component I, N-terminal RY45_10705 IPR015890 Chorismate binding, C-terminal RY45_10705 IPR019999 Anthranilate synthase component I - like RY45_10710 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain RY45_10710 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain RY45_10710 IPR011167 Iron-dependent fumarate hydratase RY45_10710 IPR036660 RY45_10710 RY45_10715 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10720 IPR025346 Protein of unknown function DUF4250 RY45_10730 IPR000811 Glycosyl transferase, family 35 RY45_10730 IPR011833 Glycogen/starch/alpha-glucan phosphorylase RY45_10730 IPR035090 RY45_10730 RY45_10735 IPR001898 Sodium/sulphate symporter RY45_10735 IPR031312 RY45_10735 RY45_10740 IPR005746 Thioredoxin RY45_10740 IPR013766 Thioredoxin domain RY45_10740 IPR017937 Thioredoxin, conserved site RY45_10740 IPR036249 RY45_10740 RY45_10745 IPR001789 Signal transduction response regulator, receiver domain RY45_10745 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_10745 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_10745 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_10745 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_10745 IPR011006 CheY-like superfamily RY45_10745 IPR036097 RY45_10745 RY45_10745 IPR036641 RY45_10745 RY45_10745 IPR036890 RY45_10745 RY45_10750 IPR003439 ABC transporter-like RY45_10750 IPR003593 AAA+ ATPase domain RY45_10750 IPR011527 ABC transporter type 1, transmembrane domain RY45_10750 IPR017871 ABC transporter, conserved site RY45_10750 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10750 IPR036640 RY45_10750 RY45_10755 IPR003439 ABC transporter-like RY45_10755 IPR003593 AAA+ ATPase domain RY45_10755 IPR011527 ABC transporter type 1, transmembrane domain RY45_10755 IPR017871 ABC transporter, conserved site RY45_10755 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10755 IPR036640 RY45_10755 RY45_10760 IPR027961 Protein of unknown function DUF4442 RY45_10760 IPR029069 HotDog domain RY45_10765 IPR036986 RY45_10765 RY45_10770 IPR002539 MaoC-like domain RY45_10770 IPR003965 Fatty acid synthase RY45_10770 IPR029069 HotDog domain RY45_10775 IPR010941 Poly-beta-hydroxybutyrate polymerase, central domain RY45_10775 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I RY45_10775 IPR029058 Alpha/Beta hydrolase fold RY45_10780 IPR014176 Phasin, subfamily 3 RY45_10780 IPR018968 Phasin RY45_10790 IPR007362 Protein of unknown function DUF429 RY45_10795 IPR004625 Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase RY45_10795 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase RY45_10795 IPR023685 Pyridoxal kinase PdxY RY45_10795 IPR029056 Ribokinase-like RY45_10800 IPR007138 Antibiotic biosynthesis monooxygenase-like domain RY45_10800 IPR011008 Dimeric alpha-beta barrel RY45_10805 IPR001670 Alcohol dehydrogenase, iron-type RY45_10805 IPR016205 Glycerol dehydrogenase RY45_10805 IPR018211 Alcohol dehydrogenase, iron-type, conserved site RY45_10810 IPR000182 GNAT domain RY45_10810 IPR016181 Acyl-CoA N-acyltransferase RY45_10815 IPR000086 NUDIX hydrolase domain RY45_10815 IPR015797 NUDIX hydrolase domain-like RY45_10820 IPR023577 CYTH-like domain RY45_10820 IPR033469 RY45_10820 RY45_10830 IPR003844 Uncharacterised protein family UPF0060 RY45_10835 IPR000182 GNAT domain RY45_10835 IPR016181 Acyl-CoA N-acyltransferase RY45_10840 IPR000182 GNAT domain RY45_10840 IPR016181 Acyl-CoA N-acyltransferase RY45_10845 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_10845 IPR001650 Helicase, C-terminal RY45_10845 IPR011545 DEAD/DEAH box helicase domain RY45_10845 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_10845 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10850 IPR000889 Glutathione peroxidase RY45_10850 IPR029759 Glutathione peroxidase active site RY45_10850 IPR036249 RY45_10850 RY45_10855 IPR005123 Oxoglutarate/iron-dependent dioxygenase RY45_10855 IPR006620 Prolyl 4-hydroxylase, alpha subunit RY45_10860 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site RY45_10860 IPR005905 D-alanine--D-alanine ligase RY45_10860 IPR011095 D-alanine--D-alanine ligase, C-terminal RY45_10860 IPR011127 D-alanine--D-alanine ligase, N-terminal domain RY45_10860 IPR013815 ATP-grasp fold, subdomain 1 RY45_10860 IPR016185 Pre-ATP-grasp domain RY45_10865 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_10865 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_10870 IPR005636 DTW RY45_10875 IPR002781 Transmembrane protein TauE like RY45_10880 IPR000847 Transcription regulator HTH, LysR RY45_10880 IPR005119 LysR, substrate-binding RY45_10880 IPR036388 RY45_10880 RY45_10880 IPR036390 RY45_10880 RY45_10885 IPR000620 Drug/metabolite transporter RY45_10890 IPR009057 Homeodomain-like RY45_10890 IPR018060 DNA binding HTH domain, AraC-type RY45_10890 IPR018062 HTH domain AraC-type, conserved site RY45_10895 IPR022602 Protein of unknown function DUF2813 RY45_10895 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10905 IPR004193 Glycoside hydrolase, family 13, N-terminal RY45_10905 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_10905 IPR011837 Glycogen debranching enzyme, GlgX type RY45_10905 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_10905 IPR013783 Immunoglobulin-like fold RY45_10905 IPR014756 Immunoglobulin E-set RY45_10905 IPR017853 Glycoside hydrolase, superfamily RY45_10935 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal RY45_10935 IPR011356 Leucine aminopeptidase/peptidase B RY45_10940 IPR006439 HAD hydrolase, subfamily IA RY45_10940 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB RY45_10940 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_10940 IPR023214 HAD-like domain RY45_10940 IPR036412 RY45_10940 RY45_10945 IPR002933 Peptidase M20 RY45_10945 IPR011650 Peptidase M20, dimerisation domain RY45_10945 IPR017439 Amidohydrolase RY45_10945 IPR036264 RY45_10945 RY45_10950 IPR000023 Phosphofructokinase domain RY45_10950 IPR012003 ATP-dependent phosphofructokinase, prokaryotic-type RY45_10950 IPR012828 6-phosphofructokinase RY45_10950 IPR015912 Phosphofructokinase, conserved site RY45_10950 IPR022953 Phosphofructokinase RY45_10950 IPR035966 RY45_10950 RY45_10955 IPR000652 Triosephosphate isomerase RY45_10955 IPR013785 Aldolase-type TIM barrel RY45_10955 IPR020861 Triosephosphate isomerase, active site RY45_10955 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic RY45_10955 IPR035990 RY45_10955 RY45_10960 IPR003848 Domain of unknown function DUF218 RY45_10965 IPR025714 Methyltransferase domain RY45_10965 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_10965 IPR033664 RY45_10965 RY45_10970 IPR033439 RY45_10970 RY45_10970 IPR033440 RY45_10970 RY45_10970 IPR033441 RY45_10970 RY45_10970 IPR036141 RY45_10970 RY45_10970 IPR036388 RY45_10970 RY45_10970 IPR036390 RY45_10970 RY45_10970 IPR038198 RY45_10970 RY45_10975 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE RY45_10980 IPR007406 MukB, N-terminal domain RY45_10980 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10980 IPR032520 RY45_10980 RY45_10985 IPR009009 RlpA-like double-psi beta-barrel domain RY45_10985 IPR012997 Rare lipoprotein A, bacterial RY45_10985 IPR034718 RY45_10985 RY45_10985 IPR036908 RY45_10985 RY45_10990 IPR007138 Antibiotic biosynthesis monooxygenase-like domain RY45_10990 IPR011008 Dimeric alpha-beta barrel RY45_10995 IPR000182 GNAT domain RY45_10995 IPR016181 Acyl-CoA N-acyltransferase RY45_11000 IPR023635 Peptide deformylase RY45_11000 IPR036821 RY45_11000 RY45_11005 IPR002818 ThiJ/PfpI RY45_11005 IPR029062 Class I glutamine amidotransferase-like RY45_11010 IPR000182 GNAT domain RY45_11010 IPR016181 Acyl-CoA N-acyltransferase RY45_11015 IPR000182 GNAT domain RY45_11015 IPR016181 Acyl-CoA N-acyltransferase RY45_11030 IPR003719 Phenazine biosynthesis PhzF protein RY45_11035 IPR012908 GPI inositol-deacylase PGAP1-like RY45_11035 IPR029058 Alpha/Beta hydrolase fold RY45_11040 IPR013988 PhnA protein, C-terminal RY45_11040 IPR013991 PhnA protein N-terminal, proteobacterial RY45_11045 IPR025714 Methyltransferase domain RY45_11045 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_11055 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_11055 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_11060 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V RY45_11060 IPR011057 Mss4-like RY45_11065 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site RY45_11065 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_11065 IPR029033 Histidine phosphatase superfamily RY45_11070 IPR000014 PAS domain RY45_11070 IPR000160 GGDEF domain RY45_11070 IPR013656 PAS fold-4 RY45_11070 IPR029787 Nucleotide cyclase RY45_11070 IPR035965 RY45_11070 RY45_11075 IPR013538 Activator of Hsp90 ATPase homologue 1-like RY45_11075 IPR023393 START-like domain RY45_11080 IPR002625 Smr protein/MutS2 C-terminal RY45_11080 IPR022990 Uncharacterised protein family UPF0115 RY45_11080 IPR036063 RY45_11080 RY45_11085 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_11085 IPR004556 Modification methylase HemK RY45_11085 IPR007848 Methyltransferase small domain RY45_11085 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase RY45_11085 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_11090 IPR000453 Chorismate synthase RY45_11090 IPR020541 Chorismate synthase, conserved site RY45_11090 IPR035904 RY45_11090 RY45_11095 IPR001638 Extracellular solute-binding protein, family 3 RY45_11100 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_11100 IPR001650 Helicase, C-terminal RY45_11100 IPR011545 DEAD/DEAH box helicase domain RY45_11100 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_11100 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11100 IPR028622 ATP-dependent RNA helicase RhlE RY45_11105 IPR014914 RES RY45_11110 IPR020358 Uncharacterised protein family Y4oB RY45_11110 IPR024467 Domain of unknown function DUF2384 RY45_11115 IPR002293 Amino acid/polyamine transporter I RY45_11115 IPR013059 Tryptophan/tyrosine transporter RY45_11115 IPR018227 Tryptophan/tyrosine permease RY45_11120 IPR000843 Transcription regulator HTH, LacI RY45_11120 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_11120 IPR010982 Lambda repressor-like, DNA-binding domain RY45_11120 IPR012781 D-fructose-responsive transcription factor RY45_11120 IPR028082 Periplasmic binding protein-like I RY45_11125 IPR000032 Phosphocarrier HPr protein-like RY45_11125 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RY45_11125 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RY45_11125 IPR002178 PTS EIIA type-2 domain RY45_11125 IPR016152 Phosphotransferase/anion transporter RY45_11125 IPR035895 RY45_11125 RY45_11130 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site RY45_11130 IPR011611 Carbohydrate kinase PfkB RY45_11130 IPR017583 Tagatose/fructose phosphokinase RY45_11130 IPR022463 Fructose 1-phosphate kinase RY45_11130 IPR029056 Ribokinase-like RY45_11135 IPR003352 Phosphotransferase system, EIIC RY45_11135 IPR003353 Phosphotransferase system, fructose-specific IIB subunit RY45_11135 IPR003501 Phosphotransferase system, EIIB component, type 2/3 RY45_11135 IPR006327 Phosphotransferase system, fructose IIC component RY45_11135 IPR036095 RY45_11135 RY45_11140 IPR010551 Glucose-6-phosphate isomerase, prokaryote RY45_11140 IPR011051 RmlC-like cupin domain RY45_11140 IPR014710 RmlC-like jelly roll fold RY45_11145 IPR000843 Transcription regulator HTH, LacI RY45_11145 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_11145 IPR010982 Lambda repressor-like, DNA-binding domain RY45_11145 IPR028082 Periplasmic binding protein-like I RY45_11150 IPR011051 RmlC-like cupin domain RY45_11150 IPR014710 RmlC-like jelly roll fold RY45_11150 IPR016847 Mannose-6-phosphate isomerase, Firmicutes, long form, predicted RY45_11155 IPR004701 Phosphotransferase system, mannose-type IIA component RY45_11155 IPR036662 RY45_11155 RY45_11160 IPR004720 Phosphotransferase system, sorbose subfamily IIB component RY45_11160 IPR036667 RY45_11160 RY45_11165 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit RY45_11170 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component RY45_11175 IPR008928 Six-hairpin glycosidase-like RY45_11175 IPR012341 Six-hairpin glycosidase RY45_11180 IPR010710 Protein of unknown function DUF1289 RY45_11185 IPR005300 Lytic transglycosylase MltA RY45_11185 IPR010611 3D domain RY45_11185 IPR026044 Membrane-bound lytic murein transglycosylase A RY45_11185 IPR036908 RY45_11185 RY45_11190 IPR001041 2Fe-2S ferredoxin-type domain RY45_11190 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RY45_11190 IPR012675 Beta-grasp domain RY45_11190 IPR036010 RY45_11190 RY45_11195 IPR000358 Ribonucleotide reductase small subunit RY45_11195 IPR009078 Ferritin-like superfamily RY45_11195 IPR012348 Ribonucleotide reductase-related RY45_11195 IPR030475 RY45_11195 RY45_11200 IPR000788 Ribonucleotide reductase large subunit, C-terminal RY45_11200 IPR005144 ATP-cone RY45_11200 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal RY45_11200 IPR013346 Ribonucleotide reductase, class I , alpha subunit RY45_11200 IPR013509 Ribonucleotide reductase large subunit, N-terminal RY45_11205 IPR006439 HAD hydrolase, subfamily IA RY45_11205 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_11205 IPR023214 HAD-like domain RY45_11205 IPR036412 RY45_11205 RY45_11210 IPR010233 Ubiquinone biosynthesis O-methyltransferase RY45_11210 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_11215 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal RY45_11215 IPR005743 DNA gyrase, subunit A RY45_11215 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel RY45_11215 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain RY45_11215 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta RY45_11215 IPR013760 DNA topoisomerase, type IIA-like domain RY45_11215 IPR035516 RY45_11215 RY45_11220 IPR007197 Radical SAM RY45_11225 IPR006597 Sel1-like RY45_11225 IPR011990 Tetratricopeptide-like helical domain RY45_11230 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain RY45_11230 IPR002320 Threonine-tRNA ligase, class IIa RY45_11230 IPR004095 TGS RY45_11230 IPR004154 Anticodon-binding RY45_11230 IPR012675 Beta-grasp domain RY45_11230 IPR012676 TGS-like RY45_11230 IPR012947 Threonyl/alanyl tRNA synthetase, SAD RY45_11230 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain RY45_11230 IPR036621 RY45_11230 RY45_11235 IPR001288 Translation initiation factor 3 RY45_11235 IPR019813 Translation initiation factor 3, conserved site RY45_11235 IPR019814 Translation initiation factor 3, N-terminal RY45_11235 IPR019815 Translation initiation factor 3, C-terminal RY45_11235 IPR036787 RY45_11235 RY45_11235 IPR036788 RY45_11235 RY45_11240 IPR001706 Ribosomal protein L35, non-mitochondrial RY45_11240 IPR018265 Ribosomal protein L35, conserved site RY45_11240 IPR021137 Ribosomal protein L35 RY45_11240 IPR037229 RY45_11240 RY45_11245 IPR005813 Ribosomal protein L20 RY45_11245 IPR035566 RY45_11245 RY45_11250 IPR002319 Phenylalanyl-tRNA synthetase RY45_11250 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal RY45_11250 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit RY45_11250 IPR010978 tRNA-binding arm RY45_11250 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial RY45_11255 IPR002547 tRNA-binding domain RY45_11255 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit RY45_11255 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding RY45_11255 IPR005146 B3/B4 tRNA-binding domain RY45_11255 IPR005147 tRNA synthetase, B5-domain RY45_11255 IPR009061 DNA binding domain, putative RY45_11255 IPR012340 Nucleic acid-binding, OB-fold RY45_11255 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RY45_11255 IPR036690 RY45_11255 RY45_11260 IPR000119 Histone-like bacterial DNA-binding protein RY45_11260 IPR005684 Integration host factor, alpha subunit RY45_11260 IPR010992 Integration host factor (IHF)-like DNA-binding domain RY45_11260 IPR020816 Histone-like DNA-binding protein, conserved site RY45_11270 IPR001789 Signal transduction response regulator, receiver domain RY45_11270 IPR011006 CheY-like superfamily RY45_11275 IPR000182 GNAT domain RY45_11275 IPR016181 Acyl-CoA N-acyltransferase RY45_11280 IPR003000 Sirtuin family RY45_11280 IPR026591 Sirtuin family, catalytic core small domain RY45_11280 IPR027546 Sirtuin, class III RY45_11280 IPR029035 DHS-like NAD/FAD-binding domain RY45_11285 IPR036374 RY45_11285 RY45_11290 IPR000160 GGDEF domain RY45_11290 IPR029787 Nucleotide cyclase RY45_11295 IPR000843 Transcription regulator HTH, LacI RY45_11295 IPR010982 Lambda repressor-like, DNA-binding domain RY45_11295 IPR028082 Periplasmic binding protein-like I RY45_11300 IPR002139 Ribokinase RY45_11300 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site RY45_11300 IPR011611 Carbohydrate kinase PfkB RY45_11300 IPR011877 Ribokinase, bacterial RY45_11300 IPR029056 Ribokinase-like RY45_11305 IPR025997 Periplasmic binding protein domain RY45_11305 IPR028082 Periplasmic binding protein-like I RY45_11310 IPR001851 ABC transporter, permease RY45_11315 IPR003439 ABC transporter-like RY45_11315 IPR003593 AAA+ ATPase domain RY45_11315 IPR017871 ABC transporter, conserved site RY45_11315 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11320 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU RY45_11320 IPR023064 D-ribose pyranase RY45_11320 IPR023750 RbsD-like domain RY45_11325 IPR004045 Glutathione S-transferase, N-terminal RY45_11325 IPR036249 RY45_11325 RY45_11325 IPR036282 RY45_11325 RY45_11335 IPR021370 Protein of unknown function DUF2987 RY45_11340 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase RY45_11340 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA RY45_11340 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_11340 IPR035107 RY45_11340 RY45_11345 IPR006016 UspA RY45_11350 IPR000595 Cyclic nucleotide-binding domain RY45_11350 IPR012318 Helix-turn-helix motif, Crp-type RY45_11350 IPR014710 RmlC-like jelly roll fold RY45_11350 IPR018335 Transcription regulator HTH, Crp-type, conserved site RY45_11350 IPR018490 Cyclic nucleotide-binding-like RY45_11350 IPR036388 RY45_11350 RY45_11350 IPR036390 RY45_11350 RY45_11355 IPR039447 RY45_11355 RY45_11360 IPR004714 Cytochrome oxidase maturation protein cbb3-type RY45_11365 IPR001757 Cation-transporting P-type ATPase RY45_11365 IPR006121 Heavy metal-associated domain, HMA RY45_11365 IPR008250 P-type ATPase, A domain RY45_11365 IPR018303 P-type ATPase, phosphorylation site RY45_11365 IPR021993 Putative metal-binding domain of cation transport ATPase RY45_11365 IPR023214 HAD-like domain RY45_11365 IPR023298 P-type ATPase, transmembrane domain RY45_11365 IPR023299 P-type ATPase, cytoplasmic domain N RY45_11365 IPR027256 Cation-transporting P-type ATPase, subfamily IB RY45_11365 IPR036163 RY45_11365 RY45_11365 IPR036412 RY45_11365 RY45_11370 IPR008620 FixH RY45_11375 IPR004678 Cytochrome c oxidase cbb3-type, subunit III RY45_11375 IPR008168 Cytochrome c, class IC RY45_11375 IPR009056 Cytochrome c-like domain RY45_11375 IPR032858 RY45_11375 RY45_11375 IPR036909 RY45_11375 RY45_11375 IPR038414 RY45_11375 RY45_11380 IPR008621 Cbb3-type cytochrome oxidase component RY45_11385 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RY45_11385 IPR036909 RY45_11385 RY45_11390 IPR000883 Cytochrome c oxidase subunit I RY45_11390 IPR004677 Cytochrome c oxidase cbb3-type, subunit I RY45_11390 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site RY45_11390 IPR036927 RY45_11390 RY45_11400 IPR003018 GAF domain RY45_11400 IPR029016 GAF domain-like RY45_11405 IPR016103 ProQ/FinO domain RY45_11405 IPR023529 Transporter ProP effector, ProQ RY45_11405 IPR035236 RY45_11405 RY45_11405 IPR036442 RY45_11405 RY45_11410 IPR001478 PDZ domain RY45_11410 IPR004447 C-terminal-processing peptidase S41A RY45_11410 IPR005151 Tail specific protease RY45_11410 IPR020992 Tail specific protease, C-terminal RY45_11410 IPR029045 ClpP/crotonase-like domain RY45_11410 IPR036034 RY45_11410 RY45_11415 IPR012779 Peptidase M1, alanyl aminopeptidase RY45_11415 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal RY45_11415 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RY45_11415 IPR027268 RY45_11415 RY45_11415 IPR035414 RY45_11415 RY45_11415 IPR037144 RY45_11415 RY45_11415 IPR038438 RY45_11415 RY45_11420 IPR021363 Protein of unknown function DUF2835 RY45_11425 IPR007780 Bacterial NAD-glutamate dehydrogenase RY45_11425 IPR028971 NAD-glutamate dehydrogenase RY45_11425 IPR036291 RY45_11425 RY45_11430 IPR001295 Dihydroorotate dehydrogenase, conserved site RY45_11430 IPR005719 Dihydroorotate dehydrogenase, class 2 RY45_11430 IPR005720 Dihydroorotate dehydrogenase domain RY45_11430 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 RY45_11430 IPR013785 Aldolase-type TIM barrel RY45_11435 IPR009809 Cell division protein ZapC RY45_11440 IPR000241 Putative RNA methylase domain RY45_11440 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_11440 IPR004114 THUMP RY45_11440 IPR017244 Ribosomal RNA large subunit methyltransferase K/L RY45_11440 IPR019614 S-adenosylmethionine-dependent methyltransferase RY45_11440 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_11445 IPR008554 Glutaredoxin-like RY45_11445 IPR036249 RY45_11445 RY45_11450 IPR003439 ABC transporter-like RY45_11450 IPR003593 AAA+ ATPase domain RY45_11450 IPR017871 ABC transporter, conserved site RY45_11450 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11450 IPR032524 RY45_11450 RY45_11450 IPR032781 RY45_11450 RY45_11450 IPR037118 RY45_11450 RY45_11455 IPR020008 GlyGly-CTERM domain RY45_11455 IPR022562 Protein of unknown function DUF3466 RY45_11460 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA RY45_11460 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ RY45_11460 IPR029069 HotDog domain RY45_11465 IPR008269 Peptidase S16, Lon C-terminal RY45_11465 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_11465 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_11465 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11470 IPR002104 Integrase, catalytic RY45_11470 IPR010998 Integrase, Lambda-type, N-terminal RY45_11470 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_11470 IPR013762 Integrase-like, catalytic core RY45_11475 IPR009813 Uncharacterised protein family YebG RY45_11475 IPR038627 RY45_11475 RY45_11480 IPR012908 GPI inositol-deacylase PGAP1-like RY45_11480 IPR029058 Alpha/Beta hydrolase fold RY45_11485 IPR002347 Glucose/ribitol dehydrogenase RY45_11485 IPR013120 Male sterility, NAD-binding RY45_11485 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_11485 IPR036291 RY45_11485 RY45_11490 IPR008769 Poly granule associated RY45_11495 IPR002641 Patatin/Phospholipase A2-related RY45_11495 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_11500 IPR001647 DNA-binding HTH domain, TetR-type RY45_11500 IPR009057 Homeodomain-like RY45_11500 IPR025722 Bacterial transcriptional repressor TetR RY45_11505 IPR011990 Tetratricopeptide-like helical domain RY45_11510 IPR004255 O-acyltransferase, WSD1, N-terminal RY45_11510 IPR009721 O-acyltransferase, WSD1, C-terminal RY45_11510 IPR014292 Acyltransferase, WS/DGAT/MGAT RY45_11510 IPR023213 Chloramphenicol acetyltransferase-like domain RY45_11515 IPR013433 Putative polyhydroxyalkanoic acid system protein RY45_11525 IPR005656 MmgE/PrpD RY45_11525 IPR012705 2-methylcitrate dehydratase PrpD RY45_11525 IPR036148 RY45_11525 RY45_11530 IPR002020 Citrate synthase-like RY45_11530 IPR011278 2-methylcitrate synthase/citrate synthase type I RY45_11530 IPR016142 Citrate synthase-like, large alpha subdomain RY45_11530 IPR016143 Citrate synthase-like, small alpha subdomain RY45_11530 IPR019810 Citrate synthase active site RY45_11530 IPR024176 Citrate synthase, bacterial-type RY45_11530 IPR036969 RY45_11530 RY45_11535 IPR012695 Methylisocitrate lyase RY45_11535 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_11535 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site RY45_11540 IPR007498 Paraquat-inducible protein A RY45_11545 IPR007498 Paraquat-inducible protein A RY45_11550 IPR003399 Mammalian cell entry-related RY45_11555 IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p RY45_11555 IPR011023 Nop2p RY45_11555 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site RY45_11555 IPR023267 RNA (C5-cytosine) methyltransferase RY45_11555 IPR023545 rRNA small subunit methyltransferase F RY45_11555 IPR027391 rRNA small subunit methyltransferase F, C-terminal domain RY45_11555 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_11555 IPR031341 RY45_11555 RY45_11565 IPR002104 Integrase, catalytic RY45_11565 IPR010998 Integrase, Lambda-type, N-terminal RY45_11565 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_11565 IPR013762 Integrase-like, catalytic core RY45_11570 IPR001130 TatD family RY45_11570 IPR015991 Uncharacterised deoxyribonuclease TatD-type RY45_11570 IPR018228 Deoxyribonuclease, TatD-related, conserved site RY45_11570 IPR032466 RY45_11570 RY45_11575 IPR003593 AAA+ ATPase domain RY45_11575 IPR004622 DNA polymerase III, delta prime subunit RY45_11575 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RY45_11575 IPR015199 DNA polymerase III, delta subunit, C-terminal RY45_11575 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11580 IPR018094 Thymidylate kinase RY45_11580 IPR018095 Thymidylate kinase, conserved site RY45_11580 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11580 IPR039430 RY45_11580 RY45_11585 IPR003770 Uncharacterised protein family UPF0755, YceG-like RY45_11590 IPR001544 Aminotransferase, class IV RY45_11590 IPR017824 Aminodeoxychorismate lyase, class IV RY45_11590 IPR036038 RY45_11590 RY45_11595 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_11595 IPR014031 Beta-ketoacyl synthase, C-terminal RY45_11595 IPR016039 Thiolase-like RY45_11595 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 RY45_11595 IPR018201 Beta-ketoacyl synthase, active site RY45_11595 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RY45_11600 IPR003231 Acyl carrier protein (ACP) RY45_11600 IPR006162 Phosphopantetheine attachment site RY45_11600 IPR009081 Acyl carrier protein-like RY45_11600 IPR036736 RY45_11600 RY45_11605 IPR002347 Glucose/ribitol dehydrogenase RY45_11605 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RY45_11605 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_11605 IPR036291 RY45_11605 RY45_11610 IPR001227 Acyl transferase domain RY45_11610 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type RY45_11610 IPR014043 Acyl transferase RY45_11610 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_11610 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RY45_11610 IPR020801 Polyketide synthase, acyl transferase domain RY45_11610 IPR024925 Malonyl CoA-acyl carrier protein transacylase RY45_11615 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 RY45_11615 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal RY45_11615 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RY45_11615 IPR016039 Thiolase-like RY45_11620 IPR003664 Fatty acid synthesis PlsX protein RY45_11620 IPR012281 Phospholipid biosynthesis protein, PlsX-like RY45_11625 IPR002677 Ribosomal protein L32p RY45_11625 IPR011332 Zinc-binding ribosomal protein RY45_11630 IPR003772 Protein of unknown function DUF177 RY45_11635 IPR002913 START domain RY45_11635 IPR023393 START-like domain RY45_11635 IPR028347 START domain-containing protein RY45_11640 IPR000847 Transcription regulator HTH, LysR RY45_11640 IPR005119 LysR, substrate-binding RY45_11640 IPR036388 RY45_11640 RY45_11640 IPR036390 RY45_11640 RY45_11645 IPR011701 Major facilitator superfamily RY45_11645 IPR036259 RY45_11645 RY45_11650 IPR003697 Maf-like protein RY45_11650 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_11655 IPR006439 HAD hydrolase, subfamily IA RY45_11655 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_11655 IPR023214 HAD-like domain RY45_11655 IPR036412 RY45_11655 RY45_11660 IPR002942 RNA-binding S4 domain RY45_11660 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_11660 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RY45_11660 IPR006225 Pseudouridine synthase, RluC/RluD RY45_11660 IPR020103 Pseudouridine synthase, catalytic domain RY45_11660 IPR036986 RY45_11660 RY45_11665 IPR003029 Ribosomal protein S1, RNA-binding domain RY45_11665 IPR004659 Ribonuclease E/G RY45_11665 IPR012340 Nucleic acid-binding, OB-fold RY45_11665 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G RY45_11665 IPR022967 RNA-binding domain, S1 RY45_11665 IPR028878 Ribonuclease E RY45_11670 IPR001204 Phosphate transporter RY45_11675 IPR011962 Deoxycytidine triphosphate deaminase RY45_11675 IPR029054 dUTPase-like RY45_11675 IPR036157 RY45_11675 RY45_11680 IPR000764 Uridine kinase like RY45_11680 IPR006083 Phosphoribulokinase/uridine kinase RY45_11680 IPR026008 Uridine kinase RY45_11680 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11685 IPR000808 Mrp, conserved site RY45_11685 IPR002744 Domain of unknown function DUF59 RY45_11685 IPR019591 Mrp/NBP35 ATP-binding protein RY45_11685 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11685 IPR033756 RY45_11685 RY45_11685 IPR034904 RY45_11685 RY45_11690 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_11690 IPR002547 tRNA-binding domain RY45_11690 IPR004495 Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal RY45_11690 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RY45_11690 IPR012340 Nucleic acid-binding, OB-fold RY45_11690 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RY45_11690 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_11690 IPR014758 Methionyl-tRNA synthetase RY45_11690 IPR015413 Methionyl/Leucyl tRNA synthetase RY45_11690 IPR023458 Methionine-tRNA ligase, type 1 RY45_11690 IPR029038 Methionyl-tRNA synthetase, Zn-domain RY45_11690 IPR033911 RY45_11690 RY45_11695 IPR004045 Glutathione S-transferase, N-terminal RY45_11695 IPR004046 Glutathione S-transferase, C-terminal RY45_11695 IPR036249 RY45_11695 RY45_11695 IPR036282 RY45_11695 RY45_11700 IPR001792 Acylphosphatase-like domain RY45_11700 IPR017968 Acylphosphatase, conserved site RY45_11700 IPR036046 RY45_11700 RY45_11705 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_11710 IPR002478 PUA domain RY45_11710 IPR015947 PUA-like domain RY45_11710 IPR019614 S-adenosylmethionine-dependent methyltransferase RY45_11710 IPR023542 rRNA large subunit methyltransferase I RY45_11710 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_11710 IPR036974 RY45_11710 RY45_11715 IPR004045 Glutathione S-transferase, N-terminal RY45_11715 IPR036249 RY45_11715 RY45_11715 IPR036282 RY45_11715 RY45_11720 IPR002656 Acyltransferase 3 RY45_11730 IPR004536 Selenide water dikinase RY45_11730 IPR010918 AIR synthase-related protein, C-terminal domain RY45_11730 IPR016188 PurM, N-terminal-like RY45_11730 IPR023061 Selenide, water dikinase, class I RY45_11730 IPR036676 RY45_11730 RY45_11730 IPR036921 RY45_11730 RY45_11735 IPR001763 Rhodanese-like domain RY45_11735 IPR017582 tRNA 2-selenouridine synthase RY45_11735 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11735 IPR036873 RY45_11735 RY45_11740 IPR001279 Beta-lactamase-like RY45_11740 IPR036866 RY45_11740 RY45_11745 IPR001789 Signal transduction response regulator, receiver domain RY45_11745 IPR003607 HD/PDEase domain RY45_11745 IPR006674 HD domain RY45_11745 IPR011006 CheY-like superfamily RY45_11750 IPR001789 Signal transduction response regulator, receiver domain RY45_11750 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_11750 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_11750 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_11750 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_11750 IPR011006 CheY-like superfamily RY45_11750 IPR029151 Periplasmic sensor domain-like RY45_11750 IPR036097 RY45_11750 RY45_11750 IPR036641 RY45_11750 RY45_11750 IPR036890 RY45_11750 RY45_11755 IPR001021 Ribosomal protein L25, long-form RY45_11755 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain RY45_11755 IPR020055 Ribosomal protein L25, short-form RY45_11755 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain RY45_11755 IPR029751 Ribosomal protein L25 RY45_11765 IPR001650 Helicase, C-terminal RY45_11765 IPR003593 AAA+ ATPase domain RY45_11765 IPR007502 Helicase-associated domain RY45_11765 IPR010222 RNA helicase, ATP-dependent DEAH box, HrpA-type RY45_11765 IPR011545 DEAD/DEAH box helicase domain RY45_11765 IPR011709 Domain of unknown function DUF1605 RY45_11765 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_11765 IPR024590 RNA helicase, ATP-dependent DEAH box, HrpA, C-terminal RY45_11765 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11770 IPR000644 CBS domain RY45_11775 IPR000792 Transcription regulator LuxR, C-terminal RY45_11775 IPR016032 Signal transduction response regulator, C-terminal effector RY45_11775 IPR036388 RY45_11775 RY45_11780 IPR038731 RY45_11780 RY45_11785 IPR004401 Nucleoid-associated protein YbaB RY45_11785 IPR036894 RY45_11785 RY45_11790 IPR003593 AAA+ ATPase domain RY45_11790 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RY45_11790 IPR012763 DNA polymerase III, subunit gamma/ tau RY45_11790 IPR021029 DNA polymerase III, tau subunit, domain V RY45_11790 IPR022754 DNA polymerase III, gamma subunit, domain III RY45_11790 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11790 IPR038249 RY45_11790 RY45_11795 IPR000836 Phosphoribosyltransferase domain RY45_11795 IPR005764 Adenine phosphoribosyl transferase RY45_11795 IPR029057 Phosphoribosyltransferase-like RY45_11800 IPR007401 Protein of unknown function DUF454 RY45_11805 IPR001269 tRNA-dihydrouridine synthase RY45_11805 IPR013785 Aldolase-type TIM barrel RY45_11805 IPR018517 tRNA-dihydrouridine synthase, conserved site RY45_11805 IPR032886 RY45_11805 RY45_11815 IPR001638 Extracellular solute-binding protein, family 3 RY45_11820 IPR002121 HRDC domain RY45_11820 IPR002562 3'-5' exonuclease domain RY45_11820 IPR006292 Ribonuclease D RY45_11820 IPR010997 HRDC-like RY45_11820 IPR012337 Ribonuclease H-like domain RY45_11820 IPR036397 RY45_11820 RY45_11825 IPR000873 AMP-dependent synthetase/ligase RY45_11825 IPR020845 AMP-binding, conserved site RY45_11825 IPR025110 AMP-binding enzyme C-terminal domain RY45_11830 IPR000073 Alpha/beta hydrolase fold-1 RY45_11830 IPR029058 Alpha/Beta hydrolase fold RY45_11835 IPR004658 Outer membrane lipoprotein Slp RY45_11840 IPR000905 Gcp-like domain RY45_11840 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ RY45_11845 IPR006555 ATP-dependent helicase, C-terminal RY45_11845 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11855 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_11855 IPR013115 Histidine biosynthesis HisG, C-terminal RY45_11855 IPR013820 ATP phosphoribosyltransferase, catalytic domain RY45_11855 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_11855 IPR018198 ATP phosphoribosyltransferase, conserved site RY45_11855 IPR020621 ATP phosphoribosyltransferase HisG, long form RY45_11860 IPR001692 Histidinol dehydrogenase, conserved site RY45_11860 IPR012131 Histidinol dehydrogenase RY45_11860 IPR016161 Aldehyde/histidinol dehydrogenase RY45_11860 IPR022695 Histidinol dehydrogenase, monofunctional RY45_11865 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site RY45_11865 IPR004839 Aminotransferase, class I/classII RY45_11865 IPR005861 Histidinol-phosphate aminotransferase family RY45_11865 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_11865 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_11865 IPR015424 Pyridoxal phosphate-dependent transferase RY45_11870 IPR000807 Imidazoleglycerol-phosphate dehydratase RY45_11870 IPR005954 Histidinol-phosphatase RY45_11870 IPR006543 Histidinol-phosphate phosphatase RY45_11870 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RY45_11870 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site RY45_11870 IPR020566 Histidine biosynthesis bifunctional protein HisB RY45_11870 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_11870 IPR023214 HAD-like domain RY45_11870 IPR036412 RY45_11870 RY45_11870 IPR038494 RY45_11870 RY45_11875 IPR010139 Imidazole glycerol phosphate synthase, subunit H RY45_11875 IPR017926 Glutamine amidotransferase RY45_11875 IPR029062 Class I glutamine amidotransferase-like RY45_11880 IPR006062 Histidine biosynthesis RY45_11880 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA RY45_11880 IPR011060 Ribulose-phosphate binding barrel RY45_11880 IPR013785 Aldolase-type TIM barrel RY45_11880 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase RY45_11885 IPR001789 Signal transduction response regulator, receiver domain RY45_11885 IPR003607 HD/PDEase domain RY45_11885 IPR011006 CheY-like superfamily RY45_11890 IPR000014 PAS domain RY45_11890 IPR013656 PAS fold-4 RY45_11890 IPR035965 RY45_11890 RY45_11895 IPR000014 PAS domain RY45_11895 IPR001610 PAC motif RY45_11895 IPR001789 Signal transduction response regulator, receiver domain RY45_11895 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_11895 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_11895 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_11895 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_11895 IPR011006 CheY-like superfamily RY45_11895 IPR013655 PAS fold-3 RY45_11895 IPR025201 Sensor protein KdpD, transmembrane domain RY45_11895 IPR035965 RY45_11895 RY45_11895 IPR036097 RY45_11895 RY45_11895 IPR036641 RY45_11895 RY45_11895 IPR036890 RY45_11895 RY45_11895 IPR038318 RY45_11895 RY45_11900 IPR004651 Histidine biosynthesis, HisF RY45_11900 IPR006062 Histidine biosynthesis RY45_11900 IPR011060 Ribulose-phosphate binding barrel RY45_11900 IPR013785 Aldolase-type TIM barrel RY45_11905 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain RY45_11905 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase RY45_11905 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like RY45_11905 IPR023019 Histidine biosynthesis bifunctional protein HisIE RY45_11905 IPR038019 RY45_11905 RY45_11920 IPR000873 AMP-dependent synthetase/ligase RY45_11920 IPR025110 AMP-binding enzyme C-terminal domain RY45_11925 IPR018385 C4-dicarboxylate anaerobic carrier-like RY45_11935 IPR008816 Glycine zipper 2TM domain RY45_11940 IPR001322 Lamin Tail Domain RY45_11940 IPR003644 Na-Ca exchanger/integrin-beta4 RY45_11940 IPR005135 Endonuclease/exonuclease/phosphatase RY45_11940 IPR036691 RY45_11940 RY45_11940 IPR038081 RY45_11940 RY45_11945 IPR001041 2Fe-2S ferredoxin-type domain RY45_11945 IPR002888 [2Fe-2S]-binding RY45_11945 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RY45_11945 IPR012675 Beta-grasp domain RY45_11945 IPR036010 RY45_11945 RY45_11945 IPR036884 RY45_11945 RY45_11950 IPR002346 Molybdopterin dehydrogenase, FAD-binding RY45_11950 IPR005107 CO dehydrogenase flavoprotein, C-terminal RY45_11950 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_11950 IPR036318 RY45_11950 RY45_11950 IPR036683 RY45_11950 RY45_11955 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RY45_11955 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding RY45_11955 IPR036856 RY45_11955 RY45_11955 IPR037165 RY45_11955 RY45_11960 IPR006043 Xanthine/uracil/vitamin C permease RY45_11965 IPR006680 Amidohydrolase 1 RY45_11965 IPR011059 Metal-dependent hydrolase, composite domain RY45_11965 IPR014311 Guanine deaminase RY45_11965 IPR032466 RY45_11965 RY45_11970 IPR006042 Xanthine/uracil permease RY45_11970 IPR006043 Xanthine/uracil/vitamin C permease RY45_11970 IPR017588 Xanthine permease RY45_11975 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RY45_11975 IPR002888 [2Fe-2S]-binding RY45_11975 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding RY45_11975 IPR012675 Beta-grasp domain RY45_11975 IPR016208 Aldehyde oxidase/xanthine dehydrogenase RY45_11975 IPR017699 Probable selenate reductase, molybdenum-binding subunit RY45_11975 IPR036856 RY45_11975 RY45_11975 IPR036884 RY45_11975 RY45_11975 IPR037165 RY45_11975 RY45_11980 IPR002346 Molybdopterin dehydrogenase, FAD-binding RY45_11980 IPR005107 CO dehydrogenase flavoprotein, C-terminal RY45_11980 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_11980 IPR017698 Probable selenate reductase, FAD-binding subunit RY45_11980 IPR036318 RY45_11980 RY45_11980 IPR036683 RY45_11980 RY45_11985 IPR006680 Amidohydrolase 1 RY45_11985 IPR011059 Metal-dependent hydrolase, composite domain RY45_11985 IPR017700 Putative selenium metabolism protein SsnA RY45_11985 IPR032466 RY45_11985 RY45_11990 IPR009051 Alpha-helical ferredoxin RY45_11990 IPR017701 Putative selenate reductase YgfK RY45_11990 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_11990 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_11990 IPR028261 Dihydroprymidine dehydrogenase domain II RY45_11990 IPR036188 RY45_11990 RY45_11995 IPR025877 MobA-like NTP transferase domain RY45_11995 IPR029044 Nucleotide-diphospho-sugar transferases RY45_12000 IPR017587 Putative selenium-dependent hydroxylase accessory protein YqeC RY45_12005 IPR003777 XdhC- CoxI RY45_12005 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family RY45_12005 IPR027051 XdhC Rossmann domain RY45_12010 IPR000620 Drug/metabolite transporter RY45_12015 IPR001048 Aspartate/glutamate/uridylate kinase RY45_12015 IPR003964 Carbamate kinase RY45_12015 IPR036393 RY45_12015 RY45_12020 IPR006680 Amidohydrolase 1 RY45_12020 IPR011059 Metal-dependent hydrolase, composite domain RY45_12020 IPR011778 Hydantoinase/dihydropyrimidinase RY45_12020 IPR032466 RY45_12020 RY45_12025 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RY45_12025 IPR002933 Peptidase M20 RY45_12025 IPR011650 Peptidase M20, dimerisation domain RY45_12025 IPR017706 Peptidase M20/DapE, YgeY RY45_12025 IPR036264 RY45_12025 RY45_12030 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_12030 IPR010081 Diaminopropionate ammonia-lyase RY45_12030 IPR019871 Diaminopropionate ammonia-lyase, subgroup RY45_12030 IPR036052 RY45_12030 RY45_12035 IPR002082 Aspartate carbamoyltransferase RY45_12035 IPR006130 Aspartate/ornithine carbamoyltransferase RY45_12035 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain RY45_12035 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding RY45_12035 IPR017702 Putative carbamoyltransferase YgeW RY45_12035 IPR036901 RY45_12035 RY45_12040 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_12040 IPR002197 DNA binding HTH domain, Fis-type RY45_12040 IPR003593 AAA+ ATPase domain RY45_12040 IPR009057 Homeodomain-like RY45_12040 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_12040 IPR025944 Sigma-54 interaction domain, conserved site RY45_12040 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12040 IPR029016 GAF domain-like RY45_12050 IPR004776 Auxin efflux carrier RY45_12055 IPR009822 YaeQ RY45_12055 IPR011335 Restriction endonuclease type II-like RY45_12055 IPR038590 RY45_12055 RY45_12060 IPR001753 Crotonase superfamily RY45_12060 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RY45_12060 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RY45_12060 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site RY45_12060 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_12060 IPR012802 Fatty oxidation complex, alpha subunit FadJ RY45_12060 IPR029045 ClpP/crotonase-like domain RY45_12060 IPR036291 RY45_12060 RY45_12065 IPR002155 Thiolase RY45_12065 IPR012806 Acetyl-CoA C-acyltransferase FadI RY45_12065 IPR016039 Thiolase-like RY45_12065 IPR020613 Thiolase, conserved site RY45_12065 IPR020615 Thiolase, acyl-enzyme intermediate active site RY45_12065 IPR020616 Thiolase, N-terminal RY45_12065 IPR020617 Thiolase, C-terminal RY45_12070 IPR011703 ATPase, AAA-3 RY45_12070 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12075 IPR002881 Domain of unknown function DUF58 RY45_12080 IPR025489 Protein of unknown function (DUF4381 RY45_12085 IPR002035 von Willebrand factor, type A RY45_12085 IPR036465 RY45_12085 RY45_12090 IPR002035 von Willebrand factor, type A RY45_12090 IPR011990 Tetratricopeptide-like helical domain RY45_12090 IPR013105 Tetratricopeptide TPR2 RY45_12090 IPR019734 Tetratricopeptide repeat RY45_12090 IPR036465 RY45_12090 RY45_12095 IPR025738 Aerotolerance-related protein BatD RY45_12100 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RY45_12100 IPR007627 RNA polymerase sigma-70 region 2 RY45_12100 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 RY45_12100 IPR013324 RNA polymerase sigma factor, region 3/4 RY45_12100 IPR013325 RNA polymerase sigma factor, region 2 RY45_12100 IPR014284 RNA polymerase sigma-70 like domain RY45_12100 IPR036388 RY45_12100 RY45_12105 IPR021806 Protein of unknown function DUF3379 RY45_12110 IPR005017 Membrane protein, aromatic hydrocarbon degradation RY45_12115 IPR005017 Membrane protein, aromatic hydrocarbon degradation RY45_12120 IPR001633 EAL domain RY45_12120 IPR013976 Metal-dependent hydrolase HDOD RY45_12120 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing RY45_12120 IPR035919 RY45_12120 RY45_12125 IPR002155 Thiolase RY45_12125 IPR016039 Thiolase-like RY45_12125 IPR020610 Thiolase, active site RY45_12125 IPR020615 Thiolase, acyl-enzyme intermediate active site RY45_12125 IPR020616 Thiolase, N-terminal RY45_12125 IPR020617 Thiolase, C-terminal RY45_12130 IPR000551 MerR-type HTH domain RY45_12130 IPR009061 DNA binding domain, putative RY45_12135 IPR001991 Sodium:dicarboxylate symporter RY45_12135 IPR036458 RY45_12135 RY45_12140 IPR009664 Protein of unknown function DUF1255 RY45_12140 IPR011051 RmlC-like cupin domain RY45_12140 IPR014710 RmlC-like jelly roll fold RY45_12145 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form RY45_12145 IPR005130 Serine dehydratase-like, alpha subunit RY45_12145 IPR005131 Serine dehydratase beta chain RY45_12145 IPR029009 Allosteric substrate binding domain RY45_12150 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form RY45_12150 IPR005130 Serine dehydratase-like, alpha subunit RY45_12150 IPR005131 Serine dehydratase beta chain RY45_12150 IPR029009 Allosteric substrate binding domain RY45_12155 IPR011970 Lytic murein transglycosylase RY45_12155 IPR023346 Lysozyme-like domain RY45_12155 IPR031304 RY45_12155 RY45_12160 IPR027354 YcgL domain RY45_12160 IPR038068 RY45_12160 RY45_12165 IPR005526 Septum formation inhibitor MinC, C-terminal RY45_12165 IPR007874 Septum formation inhibitor MinC, N-terminal RY45_12165 IPR013033 Septum formation inhibitor MinC RY45_12165 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal RY45_12165 IPR036145 RY45_12165 RY45_12165 IPR038061 RY45_12165 RY45_12170 IPR010223 ATP binding protein MinD, bacterial-type RY45_12170 IPR025501 ATP binding protein MinD RY45_12170 IPR025669 AAA domain RY45_12170 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12175 IPR005527 Septum formation topological specificity factor MinE RY45_12175 IPR036707 RY45_12175 RY45_12180 IPR007376 dsDNA mimic, putative RY45_12180 IPR036763 RY45_12180 RY45_12185 IPR001264 Glycosyl transferase, family 51 RY45_12185 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase RY45_12185 IPR023346 Lysozyme-like domain RY45_12185 IPR036950 RY45_12185 RY45_12190 IPR007376 dsDNA mimic, putative RY45_12190 IPR036763 RY45_12190 RY45_12195 IPR010710 Protein of unknown function DUF1289 RY45_12195 IPR032720 RY45_12195 RY45_12200 IPR014464 Conserved virulence factor B RY45_12200 IPR036388 RY45_12200 RY45_12200 IPR039566 RY45_12200 RY45_12205 IPR011978 Uncharacterised protein family UPF0149 RY45_12205 IPR036255 RY45_12205 RY45_12210 IPR000835 MarR-type HTH domain RY45_12210 IPR036388 RY45_12210 RY45_12210 IPR036390 RY45_12210 RY45_12215 IPR025346 Protein of unknown function DUF4250 RY45_12225 IPR003680 Flavodoxin-like fold RY45_12225 IPR023048 NADH-azoreductase, FMN-dependent RY45_12225 IPR029039 Flavoprotein-like RY45_12230 IPR000620 Drug/metabolite transporter RY45_12235 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain RY45_12235 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RY45_12235 IPR005862 Phosphoribosylglycinamide formyltransferase 2 RY45_12235 IPR011054 Rudiment single hybrid motif RY45_12235 IPR013815 ATP-grasp fold, subdomain 1 RY45_12235 IPR016185 Pre-ATP-grasp domain RY45_12240 IPR006439 HAD hydrolase, subfamily IA RY45_12240 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_12240 IPR023214 HAD-like domain RY45_12240 IPR036412 RY45_12240 RY45_12245 IPR017143 Uncharacterised conserved protein UCP037225 RY45_12245 IPR025990 Cysteine-rich CPXCG protein RY45_12250 IPR001783 Lumazine-binding protein RY45_12250 IPR017938 Riboflavin synthase-like beta-barrel RY45_12250 IPR023366 ATP synthase subunit alpha-like domain RY45_12250 IPR026017 Lumazine-binding domain RY45_12255 IPR009624 Uncharacterised protein family UPF0253 RY45_12260 IPR002528 Multi antimicrobial extrusion protein RY45_12290 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain RY45_12290 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain RY45_12290 IPR006172 DNA-directed DNA polymerase, family B RY45_12290 IPR012337 Ribonuclease H-like domain RY45_12290 IPR017964 DNA-directed DNA polymerase, family B, conserved site RY45_12290 IPR023211 DNA polymerase, palm domain RY45_12290 IPR036397 RY45_12290 RY45_12295 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain RY45_12295 IPR036754 RY45_12295 RY45_12300 IPR000160 GGDEF domain RY45_12300 IPR029787 Nucleotide cyclase RY45_12305 IPR000182 GNAT domain RY45_12305 IPR016181 Acyl-CoA N-acyltransferase RY45_12310 IPR000687 RIO kinase RY45_12310 IPR011009 Protein kinase-like domain RY45_12310 IPR018935 RIO kinase, conserved site RY45_12315 IPR004960 Bacterial lipid A biosynthesis acyltransferase RY45_12315 IPR011921 Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase RY45_12320 IPR004960 Bacterial lipid A biosynthesis acyltransferase RY45_12320 IPR011921 Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase RY45_12325 IPR004695 Voltage-dependent anion channel RY45_12325 IPR038665 RY45_12325 RY45_12330 IPR000847 Transcription regulator HTH, LysR RY45_12330 IPR005119 LysR, substrate-binding RY45_12330 IPR036388 RY45_12330 RY45_12330 IPR036390 RY45_12330 RY45_12335 IPR000683 Oxidoreductase, N-terminal RY45_12335 IPR036291 RY45_12335 RY45_12340 IPR001719 AP endonuclease 2 RY45_12340 IPR013022 Xylose isomerase-like, TIM barrel domain RY45_12340 IPR018246 AP endonuclease 2, zinc binding site RY45_12340 IPR036237 RY45_12340 RY45_12345 IPR000847 Transcription regulator HTH, LysR RY45_12345 IPR005119 LysR, substrate-binding RY45_12345 IPR036388 RY45_12345 RY45_12345 IPR036390 RY45_12345 RY45_12350 IPR002347 Glucose/ribitol dehydrogenase RY45_12350 IPR036291 RY45_12350 RY45_12355 IPR003607 HD/PDEase domain RY45_12355 IPR006674 HD domain RY45_12355 IPR006675 Uncharacterised domain HDIG RY45_12360 IPR000572 Oxidoreductase, molybdopterin-binding domain RY45_12360 IPR036374 RY45_12360 RY45_12365 IPR000160 GGDEF domain RY45_12365 IPR001633 EAL domain RY45_12365 IPR029787 Nucleotide cyclase RY45_12365 IPR035919 RY45_12365 RY45_12370 IPR001360 Glycoside hydrolase, family 1 RY45_12370 IPR017853 Glycoside hydrolase, superfamily RY45_12370 IPR033132 RY45_12370 RY45_12375 IPR000847 Transcription regulator HTH, LysR RY45_12375 IPR005119 LysR, substrate-binding RY45_12375 IPR036388 RY45_12375 RY45_12375 IPR036390 RY45_12375 RY45_12385 IPR005471 Transcription regulator IclR, N-terminal RY45_12385 IPR006118 Recombinase, conserved site RY45_12385 IPR006119 Resolvase, N-terminal RY45_12385 IPR036162 RY45_12385 RY45_12390 IPR021248 Protein of unknown function DUF2787 RY45_12395 IPR001405 RadC protein RY45_12395 IPR020891 Uncharacterised protein family UPF0758, conserved site RY45_12395 IPR025657 RadC-like JAB domain RY45_12400 IPR006935 Helicase/UvrB domain RY45_12400 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal RY45_12400 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_12400 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12405 IPR029470 PD-(D/E)XK nuclease superfamily RY45_12415 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_12415 IPR003356 DNA methylase, adenine-specific RY45_12415 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain RY45_12415 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_12430 IPR001584 Integrase, catalytic core RY45_12430 IPR012337 Ribonuclease H-like domain RY45_12430 IPR036397 RY45_12430 RY45_12440 IPR002104 Integrase, catalytic RY45_12440 IPR010998 Integrase, Lambda-type, N-terminal RY45_12440 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_12440 IPR013762 Integrase-like, catalytic core RY45_12445 IPR002781 Transmembrane protein TauE like RY45_12450 IPR002293 Amino acid/polyamine transporter I RY45_12450 IPR004754 Amino acid antiporter RY45_12450 IPR022461 Arginine/ornithine antiporter RY45_12455 IPR002347 Glucose/ribitol dehydrogenase RY45_12455 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_12455 IPR036291 RY45_12455 RY45_12460 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site RY45_12460 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding RY45_12460 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_12460 IPR011548 3-hydroxyisobutyrate dehydrogenase RY45_12460 IPR013328 Dehydrogenase, multihelical RY45_12460 IPR015815 Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type RY45_12460 IPR029154 NADP-dependent 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain RY45_12460 IPR036291 RY45_12460 RY45_12465 IPR029045 ClpP/crotonase-like domain RY45_12465 IPR032259 RY45_12465 RY45_12470 IPR001753 Crotonase superfamily RY45_12470 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RY45_12470 IPR029045 ClpP/crotonase-like domain RY45_12475 IPR006089 Acyl-CoA dehydrogenase, conserved site RY45_12475 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RY45_12475 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RY45_12475 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain RY45_12475 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RY45_12475 IPR036250 RY45_12475 RY45_12475 IPR037069 RY45_12475 RY45_12480 IPR010061 Methylmalonate-semialdehyde dehydrogenase RY45_12480 IPR015590 Aldehyde dehydrogenase domain RY45_12480 IPR016160 Aldehyde dehydrogenase, cysteine active site RY45_12480 IPR016161 Aldehyde/histidinol dehydrogenase RY45_12480 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_12480 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_12485 IPR006089 Acyl-CoA dehydrogenase, conserved site RY45_12485 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RY45_12485 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RY45_12485 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain RY45_12485 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RY45_12485 IPR036250 RY45_12485 RY45_12485 IPR037069 RY45_12485 RY45_12490 IPR029045 ClpP/crotonase-like domain RY45_12490 IPR034733 RY45_12490 RY45_12495 IPR001753 Crotonase superfamily RY45_12495 IPR014748 Crontonase, C-terminal RY45_12495 IPR029045 ClpP/crotonase-like domain RY45_12500 IPR000089 Biotin/lipoyl attachment RY45_12500 IPR001882 Biotin-binding site RY45_12500 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RY45_12500 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal RY45_12500 IPR005482 Biotin carboxylase, C-terminal RY45_12500 IPR011053 Single hybrid motif RY45_12500 IPR011054 Rudiment single hybrid motif RY45_12500 IPR016185 Pre-ATP-grasp domain RY45_12505 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site RY45_12505 IPR000891 Pyruvate carboxyltransferase RY45_12505 IPR013785 Aldolase-type TIM barrel RY45_12510 IPR000551 MerR-type HTH domain RY45_12510 IPR009061 DNA binding domain, putative RY45_12515 IPR001638 Extracellular solute-binding protein, family 3 RY45_12520 IPR008023 Protein of unknown function DUF748 RY45_12525 IPR000791 GPR1/FUN34/yaaH RY45_12530 IPR010384 MtfA family RY45_12530 IPR024079 Metallopeptidase, catalytic domain RY45_12535 IPR000182 GNAT domain RY45_12535 IPR016181 Acyl-CoA N-acyltransferase RY45_12540 IPR001463 Sodium:alanine symporter RY45_12565 IPR001753 Crotonase superfamily RY45_12565 IPR014748 Crontonase, C-terminal RY45_12565 IPR029045 ClpP/crotonase-like domain RY45_12570 IPR000595 Cyclic nucleotide-binding domain RY45_12570 IPR000644 CBS domain RY45_12570 IPR005105 Protein-PII uridylyltransferase, N-terminal RY45_12570 IPR014710 RmlC-like jelly roll fold RY45_12570 IPR018490 Cyclic nucleotide-binding-like RY45_12570 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding RY45_12575 IPR012337 Ribonuclease H-like domain RY45_12575 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_12575 IPR036397 RY45_12575 RY45_12580 IPR007436 Protein of unknown function DUF485 RY45_12585 IPR001734 Sodium/solute symporter RY45_12585 IPR018212 Sodium/solute symporter, conserved site RY45_12585 IPR038377 RY45_12585 RY45_12590 IPR003439 ABC transporter-like RY45_12590 IPR003593 AAA+ ATPase domain RY45_12590 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12590 IPR032781 RY45_12590 RY45_12595 IPR027304 Trigger factor/SurA domain RY45_12605 IPR003111 Peptidase S16, lon N-terminal RY45_12605 IPR003593 AAA+ ATPase domain RY45_12605 IPR003959 ATPase, AAA-type, core RY45_12605 IPR004815 Lon protease, bacterial/eukaryotic-type RY45_12605 IPR008268 Peptidase S16, active site RY45_12605 IPR008269 Peptidase S16, Lon C-terminal RY45_12605 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_12605 IPR015947 PUA-like domain RY45_12605 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_12605 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12605 IPR027543 Lon protease, bacterial RY45_12610 IPR003593 AAA+ ATPase domain RY45_12610 IPR003959 ATPase, AAA-type, core RY45_12610 IPR004487 Clp protease, ATP-binding subunit ClpX RY45_12610 IPR010603 Zinc finger, ClpX C4-type RY45_12610 IPR019489 Clp ATPase, C-terminal RY45_12610 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12610 IPR038366 RY45_12610 RY45_12615 IPR001907 ATP-dependent Clp protease proteolytic subunit RY45_12615 IPR018215 ClpP, active site RY45_12615 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RY45_12615 IPR029045 ClpP/crotonase-like domain RY45_12615 IPR033135 RY45_12615 RY45_12620 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain RY45_12620 IPR005215 Trigger factor RY45_12620 IPR008880 Trigger factor, C-terminal domain RY45_12620 IPR008881 Trigger factor, ribosome-binding, bacterial RY45_12620 IPR027304 Trigger factor/SurA domain RY45_12620 IPR036611 RY45_12620 RY45_12620 IPR037041 RY45_12620 RY45_12625 IPR005185 Protein of unknown function DUF307 RY45_12625 IPR031308 RY45_12625 RY45_12630 IPR003607 HD/PDEase domain RY45_12630 IPR006674 HD domain RY45_12630 IPR022971 5'-deoxynucleotidase YfbR RY45_12635 IPR003838 Permease FtsX-like RY45_12635 IPR011925 Lipoprotein releasing system, transmembrane protein, LolC/E family RY45_12635 IPR025857 MacB-like periplasmic core domain RY45_12640 IPR003439 ABC transporter-like RY45_12640 IPR003593 AAA+ ATPase domain RY45_12640 IPR011924 Lipoprotein releasing system, ATP-binding protein RY45_12640 IPR017871 ABC transporter, conserved site RY45_12640 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12645 IPR003838 Permease FtsX-like RY45_12645 IPR011925 Lipoprotein releasing system, transmembrane protein, LolC/E family RY45_12645 IPR025857 MacB-like periplasmic core domain RY45_12655 IPR001650 Helicase, C-terminal RY45_12655 IPR003711 CarD-like/TRCF domain RY45_12655 IPR004576 Transcription-repair coupling factor RY45_12655 IPR005118 Transcription-repair-coupling factor, C-terminal domain RY45_12655 IPR011545 DEAD/DEAH box helicase domain RY45_12655 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_12655 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12655 IPR036101 RY45_12655 RY45_12655 IPR037235 RY45_12655 RY45_12660 IPR000146 Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase RY45_12660 IPR020548 Fructose-1,6-bisphosphatase, active site RY45_12660 IPR028343 Fructose-1,6-bisphosphatase RY45_12660 IPR033391 RY45_12660 RY45_12665 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_12665 IPR030678 RY45_12665 RY45_12670 IPR000620 Drug/metabolite transporter RY45_12675 IPR009491 Protein of unknown function DUF1107 RY45_12680 IPR004449 Phosphohistidine phosphatase SixA, subgroup RY45_12680 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_12680 IPR029033 Histidine phosphatase superfamily RY45_12685 IPR001431 Peptidase M16, zinc-binding site RY45_12685 IPR007863 Peptidase M16, C-terminal domain RY45_12685 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like RY45_12685 IPR011765 Peptidase M16, N-terminal RY45_12685 IPR032632 RY45_12685 RY45_12690 IPR008854 TPMT family RY45_12690 IPR025835 Thiopurine S-methyltransferase RY45_12690 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_12695 IPR001245 Serine-threonine/tyrosine-protein kinase catalytic domain RY45_12695 IPR003591 Leucine-rich repeat, typical subtype RY45_12695 IPR011009 Protein kinase-like domain RY45_12695 IPR017441 Protein kinase, ATP binding site RY45_12695 IPR032675 RY45_12695 RY45_12700 IPR002347 Glucose/ribitol dehydrogenase RY45_12700 IPR036291 RY45_12700 RY45_12705 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site RY45_12705 IPR009057 Homeodomain-like RY45_12705 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding RY45_12705 IPR018060 DNA binding HTH domain, AraC-type RY45_12705 IPR036217 RY45_12705 RY45_12705 IPR036388 RY45_12705 RY45_12705 IPR036631 RY45_12705 RY45_12720 IPR001674 GMP synthase, C-terminal RY45_12720 IPR004739 GMP synthase, N-terminal RY45_12720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_12720 IPR017926 Glutamine amidotransferase RY45_12720 IPR022310 NAD/GMP synthase RY45_12720 IPR022955 GMP synthase RY45_12720 IPR029062 Class I glutamine amidotransferase-like RY45_12725 IPR000644 CBS domain RY45_12725 IPR001093 IMP dehydrogenase/GMP reductase RY45_12725 IPR005990 Inosine-5'-monophosphate dehydrogenase RY45_12725 IPR013785 Aldolase-type TIM barrel RY45_12725 IPR015875 IMP dehydrogenase / GMP reductase, conserved site RY45_12730 IPR003855 K+ potassium transporter RY45_12730 IPR023051 Potassium uptake protein, low affinity, Kup RY45_12735 IPR003538 Gram-negative bacterial TonB protein RY45_12735 IPR006260 TonB, C-terminal RY45_12735 IPR037682 RY45_12735 RY45_12740 IPR002898 MotA/TolQ/ExbB proton channel RY45_12745 IPR003400 Biopolymer transport protein ExbD/TolR RY45_12750 IPR000620 Drug/metabolite transporter RY45_12755 IPR003753 Exonuclease VII, large subunit RY45_12755 IPR020579 Exonuclease VII, large subunit, C-terminal RY45_12755 IPR025824 OB-fold nucleic acid binding domain RY45_12760 IPR006638 Elongator protein 3/MiaB/NifB RY45_12760 IPR007197 Radical SAM RY45_12760 IPR023404 Radical SAM, alpha/beta horseshoe RY45_12760 IPR026332 Putative heme utilization radical SAM enzyme HutW RY45_12765 IPR003660 HAMP linker domain RY45_12765 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_12765 IPR004090 Chemotaxis methyl-accepting receptor RY45_12770 IPR006218 DAHP synthetase I/KDSA RY45_12770 IPR006219 DHAP synthase, class 1 RY45_12770 IPR013785 Aldolase-type TIM barrel RY45_12775 IPR001986 Enolpyruvate transferase domain RY45_12775 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase RY45_12775 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RY45_12775 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site RY45_12775 IPR036968 RY45_12775 RY45_12780 IPR000192 Aminotransferase class V domain RY45_12780 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_12780 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_12780 IPR015424 Pyridoxal phosphate-dependent transferase RY45_12780 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site RY45_12780 IPR022278 Phosphoserine aminotransferase RY45_12785 IPR001308 Electron transfer flavoprotein, alpha subunit RY45_12785 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_12785 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal RY45_12785 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal RY45_12785 IPR018206 Electron transfer flavoprotein, alpha subunit, C-terminal, conserved site RY45_12785 IPR029035 DHS-like NAD/FAD-binding domain RY45_12790 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site RY45_12790 IPR012255 Electron transfer flavoprotein, beta subunit RY45_12790 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_12790 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal RY45_12795 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II RY45_12795 IPR036188 RY45_12795 RY45_12800 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB RY45_12800 IPR004488 Magnesium/cobalt transport protein CorA RY45_12805 IPR021318 Protein of unknown function DUF2919 RY45_12815 IPR011701 Major facilitator superfamily RY45_12815 IPR036259 RY45_12815 RY45_12820 IPR000531 TonB-dependent receptor, beta-barrel RY45_12820 IPR010916 TonB box, conserved site RY45_12820 IPR012910 TonB-dependent receptor, plug RY45_12820 IPR036942 RY45_12820 RY45_12820 IPR037066 RY45_12820 RY45_12825 IPR000522 ABC transporter, permease protein RY45_12825 IPR037294 RY45_12825 RY45_12830 IPR000522 ABC transporter, permease protein RY45_12830 IPR037294 RY45_12830 RY45_12835 IPR003439 ABC transporter-like RY45_12835 IPR003593 AAA+ ATPase domain RY45_12835 IPR017871 ABC transporter, conserved site RY45_12835 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12840 IPR003542 Enterobactin synthetase-like, component D RY45_12840 IPR008278 4'-phosphopantetheinyl transferase superfamily RY45_12840 IPR037143 RY45_12840 RY45_12845 IPR002491 ABC transporter periplasmic binding domain RY45_12850 IPR000873 AMP-dependent synthetase/ligase RY45_12850 IPR010071 Amino acid adenylation domain RY45_12850 IPR020845 AMP-binding, conserved site RY45_12850 IPR025110 AMP-binding enzyme C-terminal domain RY45_12855 IPR000873 AMP-dependent synthetase/ligase RY45_12855 IPR001242 Condensation domain RY45_12855 IPR006162 Phosphopantetheine attachment site RY45_12855 IPR009081 Acyl carrier protein-like RY45_12855 IPR010060 Non-ribosomal peptide synthase RY45_12855 IPR010071 Amino acid adenylation domain RY45_12855 IPR020806 Polyketide synthase, phosphopantetheine-binding domain RY45_12855 IPR020845 AMP-binding, conserved site RY45_12855 IPR023213 Chloramphenicol acetyltransferase-like domain RY45_12855 IPR036736 RY45_12855 RY45_12860 IPR002347 Glucose/ribitol dehydrogenase RY45_12860 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase RY45_12860 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_12860 IPR036291 RY45_12860 RY45_12865 IPR000873 AMP-dependent synthetase/ligase RY45_12865 IPR001242 Condensation domain RY45_12865 IPR009081 Acyl carrier protein-like RY45_12865 IPR010071 Amino acid adenylation domain RY45_12865 IPR020806 Polyketide synthase, phosphopantetheine-binding domain RY45_12865 IPR020845 AMP-binding, conserved site RY45_12865 IPR023213 Chloramphenicol acetyltransferase-like domain RY45_12865 IPR025110 AMP-binding enzyme C-terminal domain RY45_12865 IPR036736 RY45_12865 RY45_12870 IPR000868 Isochorismatase-like RY45_12870 IPR009081 Acyl carrier protein-like RY45_12870 IPR016291 Isochorismatase RY45_12870 IPR036380 RY45_12870 RY45_12870 IPR036736 RY45_12870 RY45_12875 IPR000873 AMP-dependent synthetase/ligase RY45_12875 IPR011963 2,3-dihydroxybenzoate-AMP ligase RY45_12875 IPR020845 AMP-binding, conserved site RY45_12875 IPR025110 AMP-binding enzyme C-terminal domain RY45_12880 IPR004561 Isochorismate synthase RY45_12880 IPR005801 ADC synthase RY45_12880 IPR015890 Chorismate binding, C-terminal RY45_12885 IPR010835 Protein of unknown function DUF1439 RY45_12890 IPR008928 Six-hairpin glycosidase-like RY45_12895 IPR005835 Nucleotidyl transferase RY45_12895 IPR005836 ADP-glucose pyrophosphorylase, conserved site RY45_12895 IPR011004 Trimeric LpxA-like RY45_12895 IPR011831 Glucose-1-phosphate adenylyltransferase RY45_12895 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial RY45_12895 IPR029044 Nucleotide-diphospho-sugar transferases RY45_12900 IPR000160 GGDEF domain RY45_12900 IPR001633 EAL domain RY45_12900 IPR029787 Nucleotide cyclase RY45_12900 IPR035919 RY45_12900 RY45_12910 IPR021284 Protein of unknown function DUF2750 RY45_12915 IPR011611 Carbohydrate kinase PfkB RY45_12915 IPR029056 Ribokinase-like RY45_12920 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RY45_12920 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain RY45_12925 IPR001015 Ferrochelatase RY45_12925 IPR019772 Ferrochelatase, active site RY45_12930 IPR000850 Adenylate kinase/UMP-CMP kinase RY45_12930 IPR006259 Adenylate kinase subfamily RY45_12930 IPR007862 Adenylate kinase, active site lid domain RY45_12930 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12930 IPR033690 RY45_12930 RY45_12935 IPR001404 Heat shock protein Hsp90 family RY45_12935 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_12935 IPR019805 Heat shock protein Hsp90, conserved site RY45_12935 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_12935 IPR020575 Heat shock protein Hsp90, N-terminal RY45_12935 IPR036890 RY45_12935 RY45_12935 IPR037196 RY45_12935 RY45_12940 IPR000093 DNA recombination protein RecR RY45_12940 IPR006171 Toprim domain RY45_12940 IPR023627 Recombination protein RecR RY45_12940 IPR023628 Recombination protein RecR, C4-type zinc finger RY45_12945 IPR003786 Protein FdhD RY45_12945 IPR016193 Cytidine deaminase-like RY45_12950 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_12950 IPR003018 GAF domain RY45_12950 IPR003593 AAA+ ATPase domain RY45_12950 IPR009057 Homeodomain-like RY45_12950 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_12950 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_12950 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12950 IPR029016 GAF domain-like RY45_12960 IPR006478 Formate dehydrogenase, alpha subunit RY45_12960 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site RY45_12960 IPR006656 Molybdopterin oxidoreductase RY45_12960 IPR006657 Molydopterin dinucleotide-binding domain RY45_12960 IPR009010 Aspartate decarboxylase-like domain RY45_12965 IPR006656 Molybdopterin oxidoreductase RY45_12965 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RY45_12965 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site RY45_12970 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_12970 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_12975 IPR003855 K+ potassium transporter RY45_12975 IPR023051 Potassium uptake protein, low affinity, Kup RY45_12980 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_12980 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_12985 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal RY45_12985 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase RY45_12990 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H RY45_12990 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site RY45_12995 IPR001135 NADH-quinone oxidoreductase, subunit D RY45_12995 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit RY45_12995 IPR001501 Nickel-dependent hydrogenase, large subunit RY45_12995 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site RY45_12995 IPR029014 NiFe hydrogenase-like RY45_12995 IPR037232 RY45_12995 RY45_12995 IPR038290 RY45_12995 RY45_13000 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13000 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13005 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit RY45_13005 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit RY45_13010 IPR010005 Formate hydrogenlyase maturation HycH RY45_13015 IPR000671 Peptidase A31 family RY45_13015 IPR004420 Peptidase A31, hydrogenase maturation protease HycI RY45_13015 IPR023430 Peptidase HybD-like domain RY45_13020 IPR004534 L-seryl-tRNA selenium transferase RY45_13020 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_13020 IPR015424 Pyridoxal phosphate-dependent transferase RY45_13020 IPR018319 L-seryl-tRNA selenium transferase-like RY45_13020 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain RY45_13025 IPR000795 Elongation factor, GTP-binding domain RY45_13025 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 RY45_13025 IPR004535 Translation elongation factor, selenocysteine-specific RY45_13025 IPR005225 Small GTP-binding protein domain RY45_13025 IPR009000 Translation protein, beta-barrel domain RY45_13025 IPR015191 Translation elongation factor SelB, winged helix, type 3 RY45_13025 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13025 IPR036388 RY45_13025 RY45_13025 IPR036390 RY45_13025 RY45_13030 IPR001792 Acylphosphatase-like domain RY45_13030 IPR004421 Carbamoyltransferase, HypF-type RY45_13030 IPR006070 YrdC-like domain RY45_13030 IPR011125 Zinc finger, HypF-type RY45_13030 IPR017945 DHBP synthase RibB-like alpha/beta domain RY45_13030 IPR017968 Acylphosphatase, conserved site RY45_13030 IPR036046 RY45_13030 RY45_13035 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RY45_13035 IPR037254 RY45_13035 RY45_13040 IPR002780 Hydrogenase formation HypD protein RY45_13045 IPR010918 AIR synthase-related protein, C-terminal domain RY45_13045 IPR011854 Hydrogenase expression/formation protein HypE RY45_13045 IPR016188 PurM, N-terminal-like RY45_13045 IPR036676 RY45_13045 RY45_13045 IPR036921 RY45_13045 RY45_13050 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF RY45_13050 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site RY45_13055 IPR003495 CobW/HypB/UreG domain RY45_13055 IPR004392 Hydrogenase accessory protein HypB RY45_13055 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13060 IPR003439 ABC transporter-like RY45_13060 IPR003593 AAA+ ATPase domain RY45_13060 IPR017871 ABC transporter, conserved site RY45_13060 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13065 IPR003439 ABC transporter-like RY45_13065 IPR003593 AAA+ ATPase domain RY45_13065 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13070 IPR000515 MetI-like domain RY45_13070 IPR035906 RY45_13070 RY45_13075 IPR000515 MetI-like domain RY45_13075 IPR035906 RY45_13075 RY45_13080 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_13080 IPR030678 RY45_13080 RY45_13090 IPR000671 Peptidase A31 family RY45_13090 IPR004419 Peptidase A31, hydrogenase expression/formation protein RY45_13090 IPR023430 Peptidase HybD-like domain RY45_13095 IPR001501 Nickel-dependent hydrogenase, large subunit RY45_13095 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site RY45_13095 IPR029014 NiFe hydrogenase-like RY45_13105 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13105 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13105 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_13110 IPR001821 [NiFe]-hydrogenase, small subunit RY45_13110 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit RY45_13110 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_13110 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RY45_13110 IPR037024 RY45_13110 RY45_13110 IPR037148 RY45_13110 RY45_13115 IPR001789 Signal transduction response regulator, receiver domain RY45_13115 IPR011006 CheY-like superfamily RY45_13120 IPR002645 STAS domain RY45_13120 IPR036513 RY45_13120 RY45_13125 IPR002545 CheW-like protein RY45_13125 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_13125 IPR004105 Histidine kinase CheA-like, homodimeric domain RY45_13125 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_13125 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_13125 IPR036061 RY45_13125 RY45_13125 IPR036097 RY45_13125 RY45_13125 IPR036641 RY45_13125 RY45_13125 IPR036890 RY45_13125 RY45_13125 IPR037006 RY45_13125 RY45_13130 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13130 IPR004090 Chemotaxis methyl-accepting receptor RY45_13130 IPR024478 4HB MCP domain RY45_13135 IPR002545 CheW-like protein RY45_13135 IPR036061 RY45_13135 RY45_13140 IPR000780 MCP methyltransferase, CheR-type RY45_13140 IPR022641 MCP methyltransferase, CheR-type, all-alpha domain, N-terminal RY45_13140 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RY45_13140 IPR026024 Chemotaxis protein methyltransferase CheR RY45_13140 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_13140 IPR036804 RY45_13140 RY45_13145 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase RY45_13145 IPR001789 Signal transduction response regulator, receiver domain RY45_13145 IPR008248 Signal transduction response regulator, chemotaxis, CheB RY45_13145 IPR011006 CheY-like superfamily RY45_13145 IPR035909 RY45_13145 RY45_13150 IPR001633 EAL domain RY45_13150 IPR001789 Signal transduction response regulator, receiver domain RY45_13150 IPR011006 CheY-like superfamily RY45_13150 IPR035919 RY45_13150 RY45_13155 IPR003660 HAMP linker domain RY45_13155 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13155 IPR024478 4HB MCP domain RY45_13160 IPR000821 Alanine racemase RY45_13160 IPR001608 Alanine racemase, N-terminal RY45_13160 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RY45_13160 IPR011079 Alanine racemase, C-terminal RY45_13160 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site RY45_13160 IPR029066 PLP-binding barrel RY45_13165 IPR005146 B3/B4 tRNA-binding domain RY45_13170 IPR001387 Cro/C1-type helix-turn-helix domain RY45_13170 IPR010982 Lambda repressor-like, DNA-binding domain RY45_13170 IPR011051 RmlC-like cupin domain RY45_13170 IPR013096 Cupin 2, conserved barrel RY45_13170 IPR014710 RmlC-like jelly roll fold RY45_13180 IPR001902 Sulphate anion transporter RY45_13180 IPR002645 STAS domain RY45_13180 IPR011547 Sulphate transporter RY45_13180 IPR036513 RY45_13180 RY45_13195 IPR005134 Uncharacterised protein family UPF0114 RY45_13195 IPR020761 Uncharacterised protein family UPF0114, bacteria RY45_13205 IPR011045 Nitrous oxide reductase, N-terminal RY45_13205 IPR015943 WD40/YVTN repeat-like-containing domain RY45_13205 IPR036280 RY45_13205 RY45_13210 IPR004923 Iron permease FTR1/Fip1/EfeU RY45_13215 IPR002937 Amine oxidase RY45_13215 IPR036188 RY45_13215 RY45_13230 IPR004812 Drug resistance transporter Bcr/CmlA subfamily RY45_13230 IPR011701 Major facilitator superfamily RY45_13230 IPR036259 RY45_13230 RY45_13235 IPR025579 Domain of unknown function DUF4357 RY45_13240 IPR003439 ABC transporter-like RY45_13240 IPR003593 AAA+ ATPase domain RY45_13240 IPR017871 ABC transporter, conserved site RY45_13240 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13245 IPR003838 Permease FtsX-like RY45_13245 IPR025857 MacB-like periplasmic core domain RY45_13250 IPR010791 Hydroxyneurosporene synthase RY45_13250 IPR023374 AttH-like domain RY45_13270 IPR004017 Cysteine-rich domain RY45_13270 IPR004113 FAD-linked oxidase, C-terminal RY45_13270 IPR006094 FAD linked oxidase, N-terminal RY45_13270 IPR009051 Alpha-helical ferredoxin RY45_13270 IPR016164 FAD-linked oxidase-like, C-terminal RY45_13270 IPR016167 FAD-binding, type 2, subdomain 1 RY45_13270 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RY45_13270 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13270 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13270 IPR036318 RY45_13270 RY45_13275 IPR003741 Domain of unknown function DUF162 RY45_13275 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RY45_13275 IPR037171 RY45_13275 RY45_13280 IPR003741 Domain of unknown function DUF162 RY45_13280 IPR004452 4Fe-4S binding protein RY45_13280 IPR009051 Alpha-helical ferredoxin RY45_13280 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13280 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13280 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RY45_13280 IPR024569 4Fe-4S binding protein, C-terminal RY45_13280 IPR037171 RY45_13280 RY45_13285 IPR004017 Cysteine-rich domain RY45_13290 IPR003804 L-lactate permease RY45_13295 IPR000847 Transcription regulator HTH, LysR RY45_13295 IPR005119 LysR, substrate-binding RY45_13295 IPR036388 RY45_13295 RY45_13295 IPR036390 RY45_13295 RY45_13300 IPR027373 Ribbon-helix-helix domain RY45_13300 IPR038268 RY45_13300 RY45_13305 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_13305 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13310 IPR000073 Alpha/beta hydrolase fold-1 RY45_13310 IPR000639 Epoxide hydrolase-like RY45_13310 IPR029058 Alpha/Beta hydrolase fold RY45_13315 IPR007351 Uncharacterised protein YjbR RY45_13315 IPR038056 RY45_13315 RY45_13320 IPR000182 GNAT domain RY45_13320 IPR016181 Acyl-CoA N-acyltransferase RY45_13325 IPR020979 Uncharacterised protein family A0KLC6 RY45_13335 IPR002569 Peptide methionine sulphoxide reductase MsrA RY45_13335 IPR036509 RY45_13335 RY45_13340 IPR000182 GNAT domain RY45_13340 IPR001048 Aspartate/glutamate/uridylate kinase RY45_13340 IPR010167 Amino-acid N-acetyltransferase (ArgA) RY45_13340 IPR016181 Acyl-CoA N-acyltransferase RY45_13340 IPR036393 RY45_13340 RY45_13345 IPR001048 Aspartate/glutamate/uridylate kinase RY45_13345 IPR001341 Aspartate kinase domain RY45_13345 IPR005260 Aspartate kinase, monofunctional class RY45_13345 IPR018042 Aspartate kinase, conserved site RY45_13345 IPR036393 RY45_13345 RY45_13350 IPR011009 Protein kinase-like domain RY45_13355 IPR000917 Sulfatase RY45_13355 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_13355 IPR017850 Alkaline-phosphatase-like, core domain RY45_13360 IPR003507 Muramoyl-tetrapeptide carboxypeptidase RY45_13360 IPR027461 LD-carboxypeptidase A, C-terminal domain RY45_13360 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain RY45_13360 IPR029062 Class I glutamine amidotransferase-like RY45_13365 IPR002641 Patatin/Phospholipase A2-related RY45_13365 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_13370 IPR009051 Alpha-helical ferredoxin RY45_13370 IPR014259 Sulphite reductase, subunit A RY45_13370 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13370 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13375 IPR001221 Phenol hydroxylase reductase RY45_13375 IPR001433 Oxidoreductase FAD/NAD(P)-binding RY45_13375 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit RY45_13375 IPR014260 Sulphite reductase, subunit B RY45_13375 IPR017938 Riboflavin synthase-like beta-barrel RY45_13375 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain RY45_13375 IPR039261 RY45_13375 RY45_13380 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain RY45_13380 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site RY45_13380 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain RY45_13380 IPR014261 Sulphite reductase, subunit C RY45_13380 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13380 IPR036136 RY45_13380 RY45_13385 IPR000878 Tetrapyrrole methylase RY45_13385 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site RY45_13385 IPR006366 Uroporphyrin-III C-methyltransferase RY45_13385 IPR006367 Sirohaem synthase, N-terminal RY45_13385 IPR012409 Sirohaem synthase RY45_13385 IPR014776 Tetrapyrrole methylase, subdomain 2 RY45_13385 IPR014777 Tetrapyrrole methylase, subdomain 1 RY45_13385 IPR019478 Sirohaem synthase, dimerisation domain RY45_13385 IPR028281 Siroheme synthase, central domain RY45_13385 IPR035996 RY45_13385 RY45_13385 IPR036291 RY45_13385 RY45_13385 IPR037115 RY45_13385 RY45_13395 IPR002765 Uncharacterised protein family UPF0145 RY45_13395 IPR035439 RY45_13395 RY45_13405 IPR008414 Hemolysin BL-binding component RY45_13415 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_13415 IPR036188 RY45_13415 RY45_13420 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA RY45_13420 IPR022987 Uncharacterised protein family UPF0227 RY45_13420 IPR029058 Alpha/Beta hydrolase fold RY45_13425 IPR006042 Xanthine/uracil permease RY45_13425 IPR006043 Xanthine/uracil/vitamin C permease RY45_13425 IPR017588 Xanthine permease RY45_13430 IPR001567 Peptidase M3A/M3B RY45_13430 IPR013647 Oligopeptidase F, N-terminal domain RY45_13435 IPR001567 Peptidase M3A/M3B RY45_13435 IPR013647 Oligopeptidase F, N-terminal domain RY45_13440 IPR008526 Inner membrane protein YedI RY45_13445 IPR010323 Protein of unknown function DUF924 RY45_13445 IPR011990 Tetratricopeptide-like helical domain RY45_13450 IPR005665 Protein-export membrane protein SecF, bacterial RY45_13450 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_13450 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RY45_13450 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RY45_13455 IPR005791 Protein translocase subunit SecD RY45_13455 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_13455 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RY45_13455 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RY45_13455 IPR027398 SecD export protein N-terminal TM domain RY45_13465 IPR016875 Uncharacterised conserved protein UCP028200 RY45_13470 IPR002575 Aminoglycoside phosphotransferase RY45_13470 IPR011009 Protein kinase-like domain RY45_13475 IPR014094 Penicillin-binding protein activator LpoB RY45_13480 IPR010824 Protein of unknown function DUF1425 RY45_13480 IPR038483 RY45_13480 RY45_13485 IPR011990 Tetratricopeptide-like helical domain RY45_13490 IPR001310 Histidine triad (HIT) protein RY45_13490 IPR019808 Histidine triad, conserved site RY45_13490 IPR036265 RY45_13490 RY45_13495 IPR003660 HAMP linker domain RY45_13495 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13500 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RY45_13500 IPR038418 RY45_13500 RY45_13505 IPR002195 Dihydroorotase, conserved site RY45_13505 IPR006680 Amidohydrolase 1 RY45_13505 IPR011059 Metal-dependent hydrolase, composite domain RY45_13505 IPR032466 RY45_13505 RY45_13520 IPR001991 Sodium:dicarboxylate symporter RY45_13520 IPR036458 RY45_13520 RY45_13525 IPR007318 Phospholipid methyltransferase RY45_13530 IPR000821 Alanine racemase RY45_13530 IPR001608 Alanine racemase, N-terminal RY45_13530 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RY45_13530 IPR011079 Alanine racemase, C-terminal RY45_13530 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site RY45_13530 IPR029066 PLP-binding barrel RY45_13535 IPR005496 Integral membrane protein TerC RY45_13535 IPR022369 Integral membrane protein TerC, riboswitch-linked RY45_13540 IPR003439 ABC transporter-like RY45_13540 IPR003593 AAA+ ATPase domain RY45_13540 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RY45_13540 IPR017871 ABC transporter, conserved site RY45_13540 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13545 IPR003439 ABC transporter-like RY45_13545 IPR003593 AAA+ ATPase domain RY45_13545 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RY45_13545 IPR017871 ABC transporter, conserved site RY45_13545 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13550 IPR000515 MetI-like domain RY45_13550 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RY45_13550 IPR035906 RY45_13550 RY45_13555 IPR000515 MetI-like domain RY45_13555 IPR035906 RY45_13555 RY45_13560 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_13560 IPR030678 RY45_13560 RY45_13565 IPR002771 Multiple antibiotic resistance (MarC)-related RY45_13570 IPR018724 2OG-Fe dioxygenase RY45_13575 IPR001670 Alcohol dehydrogenase, iron-type RY45_13575 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase RY45_13575 IPR015590 Aldehyde dehydrogenase domain RY45_13575 IPR016161 Aldehyde/histidinol dehydrogenase RY45_13575 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_13575 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_13575 IPR018211 Alcohol dehydrogenase, iron-type, conserved site RY45_13580 IPR003607 HD/PDEase domain RY45_13580 IPR006675 Uncharacterised domain HDIG RY45_13580 IPR021812 Protein of unknown function DUF3391 RY45_13585 IPR003018 GAF domain RY45_13585 IPR010559 Signal transduction histidine kinase, internal region RY45_13585 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region RY45_13585 IPR036890 RY45_13585 RY45_13590 IPR001789 Signal transduction response regulator, receiver domain RY45_13590 IPR007492 LytTR DNA-binding domain RY45_13590 IPR011006 CheY-like superfamily RY45_13595 IPR003706 Carbon starvation protein CstA RY45_13595 IPR025299 CstA C-terminal domain RY45_13600 IPR011223 Uncharacterised conserved protein UCP028770 RY45_13605 IPR006143 RND efflux pump, membrane fusion protein RY45_13605 IPR032317 RY45_13605 RY45_13610 IPR001650 Helicase, C-terminal RY45_13610 IPR006935 Helicase/UvrB domain RY45_13610 IPR011332 Zinc-binding ribosomal protein RY45_13610 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_13610 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13615 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C RY45_13615 IPR012338 Beta-lactamase/transpeptidase-like RY45_13620 IPR002109 Glutaredoxin RY45_13620 IPR011767 Glutaredoxin active site RY45_13620 IPR011902 Glutaredoxin, GrxA RY45_13620 IPR014025 Glutaredoxin subgroup RY45_13620 IPR036249 RY45_13620 RY45_13625 IPR023387 DUF1653-like domain RY45_13625 IPR037135 RY45_13625 RY45_13630 IPR004839 Aminotransferase, class I/classII RY45_13630 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_13630 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_13630 IPR015424 Pyridoxal phosphate-dependent transferase RY45_13635 IPR018385 C4-dicarboxylate anaerobic carrier-like RY45_13640 IPR010758 Trans-2-enoyl-CoA reductase RY45_13640 IPR024906 Enoyl reductase FAD binding domain RY45_13640 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative RY45_13645 IPR000014 PAS domain RY45_13645 IPR001610 PAC motif RY45_13645 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13645 IPR013655 PAS fold-3 RY45_13645 IPR035965 RY45_13645 RY45_13655 IPR000620 Drug/metabolite transporter RY45_13660 IPR003667 Electron transport complex, Rnf/Nqr RY45_13660 IPR011293 Electron transport complex, RnfA RY45_13665 IPR007202 4Fe-4S domain RY45_13665 IPR010207 Electron transport complex, RnfB RY45_13665 IPR016463 Electron transport complex, RnfB, Proteobacteria RY45_13665 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13670 IPR009051 Alpha-helical ferredoxin RY45_13670 IPR010208 Electron transport complex protein RnfC RY45_13670 IPR011538 NADH:ubiquinone oxidoreductase, 51kDa subunit RY45_13670 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13670 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13670 IPR019554 Soluble ligand binding domain RY45_13670 IPR026902 RnfC Barrel sandwich hybrid domain RY45_13670 IPR037225 RY45_13670 RY45_13675 IPR004338 NADH-quinone reductase NQR2/RnfD RY45_13675 IPR011303 Electron transport complex, RnfD RY45_13680 IPR007329 FMN-binding RY45_13680 IPR010209 Electron transport complex, RnfG RY45_13685 IPR003667 Electron transport complex, Rnf/Nqr RY45_13685 IPR010968 Electron transport complex, RnfE RY45_13690 IPR000445 Helix-hairpin-helix motif RY45_13690 IPR003265 HhH-GPD domain RY45_13690 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif RY45_13690 IPR004035 Endonuclease III, iron-sulphur binding site RY45_13690 IPR004036 Endonuclease III-like, conserved site-2 RY45_13690 IPR005759 Endonuclease III RY45_13690 IPR011257 DNA glycosylase RY45_13690 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RY45_13695 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_13695 IPR004361 Glyoxalase I RY45_13695 IPR018146 Glyoxalase I, conserved site RY45_13695 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13700 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_13700 IPR036737 RY45_13700 RY45_13705 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13705 IPR004090 Chemotaxis methyl-accepting receptor RY45_13705 IPR013587 Nitrate/nitrite sensing protein RY45_13710 IPR005987 Ribonuclease T RY45_13710 IPR012337 Ribonuclease H-like domain RY45_13710 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_13710 IPR036397 RY45_13710 RY45_13715 IPR018461 Na+/H+ antiporter, NhaC-like RY45_13715 IPR032813 RY45_13715 RY45_13720 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_13720 IPR001650 Helicase, C-terminal RY45_13720 IPR005580 DbpA, RNA-binding RY45_13720 IPR011545 DEAD/DEAH box helicase domain RY45_13720 IPR012677 Nucleotide-binding, alpha-beta plait RY45_13720 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_13720 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13720 IPR028618 ATP-dependent RNA helicase DeaD RY45_13725 IPR003736 Phenylacetic acid degradation-related domain RY45_13725 IPR006683 Thioesterase superfamily RY45_13725 IPR029069 HotDog domain RY45_13735 IPR004113 FAD-linked oxidase, C-terminal RY45_13735 IPR006094 FAD linked oxidase, N-terminal RY45_13735 IPR009051 Alpha-helical ferredoxin RY45_13735 IPR016164 FAD-linked oxidase-like, C-terminal RY45_13735 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13735 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13735 IPR036318 RY45_13735 RY45_13740 IPR002524 Cation efflux protein RY45_13740 IPR027469 Cation efflux protein transmembrane domain RY45_13745 IPR000644 CBS domain RY45_13745 IPR005170 Transporter-associated domain RY45_13745 IPR005496 Integral membrane protein TerC RY45_13745 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_13745 IPR036318 RY45_13745 RY45_13750 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal RY45_13750 IPR013785 Aldolase-type TIM barrel RY45_13755 IPR001365 Adenosine/AMP deaminase domain RY45_13755 IPR006330 Adenosine/adenine deaminase RY45_13755 IPR028892 Adenine deaminase type 2 RY45_13755 IPR032466 RY45_13755 RY45_13760 IPR006357 HAD-superfamily hydrolase, subfamily IIA RY45_13760 IPR023214 HAD-like domain RY45_13760 IPR036412 RY45_13760 RY45_13765 IPR003148 Regulator of K+ conductance, N-terminal RY45_13765 IPR006153 Cation/H+ exchanger RY45_13765 IPR036291 RY45_13765 RY45_13765 IPR038770 RY45_13765 RY45_13770 IPR008579 Domain of unknown function DUF861, cupin-3 RY45_13770 IPR011051 RmlC-like cupin domain RY45_13770 IPR014710 RmlC-like jelly roll fold RY45_13775 IPR001962 Asparagine synthase RY45_13775 IPR006426 Asparagine synthase, glutamine-hydrolyzing RY45_13775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_13775 IPR017932 Glutamine amidotransferase type 2 domain RY45_13775 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_13780 IPR036249 RY45_13780 RY45_13785 IPR004045 Glutathione S-transferase, N-terminal RY45_13785 IPR036249 RY45_13785 RY45_13785 IPR036282 RY45_13785 RY45_13790 IPR004045 Glutathione S-transferase, N-terminal RY45_13790 IPR004046 Glutathione S-transferase, C-terminal RY45_13790 IPR005955 Maleylacetoacetate isomerase RY45_13790 IPR036249 RY45_13790 RY45_13790 IPR036282 RY45_13790 RY45_13795 IPR011234 Fumarylacetoacetase, C-terminal-related RY45_13795 IPR036663 RY45_13795 RY45_13800 IPR005708 Homogentisate 1,2-dioxygenase RY45_13800 IPR011051 RmlC-like cupin domain RY45_13800 IPR014710 RmlC-like jelly roll fold RY45_13805 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_13805 IPR005956 4-hydroxyphenylpyruvate dioxygenase RY45_13805 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13810 IPR023214 HAD-like domain RY45_13810 IPR036412 RY45_13810 RY45_13815 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_13815 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RY45_13815 IPR006508 Pseudouridine synthase, RluA-like RY45_13815 IPR020103 Pseudouridine synthase, catalytic domain RY45_13820 IPR000160 GGDEF domain RY45_13820 IPR015168 SsuA/THI5-like RY45_13820 IPR029787 Nucleotide cyclase RY45_13825 IPR000014 PAS domain RY45_13825 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_13825 IPR004090 Chemotaxis methyl-accepting receptor RY45_13825 IPR013655 PAS fold-3 RY45_13825 IPR035965 RY45_13825 RY45_13830 IPR010333 Bacterial virulence RY45_13830 IPR029058 Alpha/Beta hydrolase fold RY45_13835 IPR016181 Acyl-CoA N-acyltransferase RY45_13835 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RY45_13835 IPR024320 Lysylphosphatidylglycerol synthetase, domain of unknown function DUF2156 RY45_13840 IPR000917 Sulfatase RY45_13840 IPR012549 Domain of unknown function DUF1705 RY45_13840 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_13840 IPR017850 Alkaline-phosphatase-like, core domain RY45_13845 IPR007136 Protein of unknown function DUF347 RY45_13850 IPR005829 Sugar transporter, conserved site RY45_13850 IPR011701 Major facilitator superfamily RY45_13850 IPR036259 RY45_13850 RY45_13855 IPR012842 Type III secretion system HrpE/YscL RY45_13855 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RY45_13855 IPR038495 RY45_13855 RY45_13865 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ RY45_13865 IPR006182 Secretory protein YscJ/FliF RY45_13870 IPR012670 Type III secretion system, YscI/HrpB RY45_13875 IPR013349 Type III secretion system effector YopR RY45_13880 IPR011990 Tetratricopeptide-like helical domain RY45_13880 IPR013348 Type III secretion system YscG RY45_13885 IPR011841 Type III secretion system, needle protein RY45_13885 IPR021123 Type III secretion, needle-protein-like RY45_13885 IPR037203 RY45_13885 RY45_13890 IPR012671 Type III secretion system, secretion protein E RY45_13895 IPR008984 SMAD/FHA domain RY45_13895 IPR012843 Type III secretion system YscD/HrpQ RY45_13895 IPR032030 RY45_13895 RY45_13895 IPR032034 RY45_13895 RY45_13900 IPR003522 Type III secretion system outer membrane pore YscC/HrcC RY45_13900 IPR004845 Type II secretion system GspD, conserved site RY45_13900 IPR004846 Type II/III secretion system RY45_13900 IPR005644 NolW-like RY45_13900 IPR038591 RY45_13900 RY45_13905 IPR010261 Tir chaperone protein (CesT) family RY45_13905 IPR013353 Type III secretion system chaperone YscB RY45_13910 IPR031835 RY45_13910 RY45_13915 IPR009057 Homeodomain-like RY45_13915 IPR018060 DNA binding HTH domain, AraC-type RY45_13915 IPR018062 HTH domain AraC-type, conserved site RY45_13915 IPR020449 Transcription regulator HTH, AraC- type RY45_13915 IPR037923 RY45_13915 RY45_13920 IPR013400 Type III secretion system chaperone, YscW RY45_13920 IPR039366 RY45_13920 RY45_13930 IPR010261 Tir chaperone protein (CesT) family RY45_13935 IPR008898 YopD-like RY45_13940 IPR006972 Secretion system effector C, SseC-like RY45_13945 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD RY45_13945 IPR011990 Tetratricopeptide-like helical domain RY45_13945 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup RY45_13950 IPR005413 Low calcium response V antigen RY45_13950 IPR036139 RY45_13950 RY45_13955 IPR009863 Type III secretion protein, LcrG RY45_13960 IPR013405 Type III secretion system regulator, LcrR RY45_13960 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 RY45_13965 IPR001712 Type III secretion system FHIPEP RY45_13965 IPR006302 Type III secretion protein HrcV RY45_13965 IPR025505 FHIPEP conserved site RY45_13970 IPR011990 Tetratricopeptide-like helical domain RY45_13970 IPR016684 Type III secretion system chaperone, YscY RY45_13975 IPR012672 Type III secretion system YscX RY45_13980 IPR012673 Type III secretion system chaperone SycN RY45_13985 IPR013351 Type III secretion system effector delivery regulator TyeA-related RY45_13985 IPR015144 Type III secretion system effector delivery regulator TyeA RY45_13985 IPR038347 RY45_13985 RY45_13990 IPR010812 Hypersensitivity response secretion-like, HrpJ RY45_13990 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC RY45_13995 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RY45_13995 IPR003593 AAA+ ATPase domain RY45_13995 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain RY45_13995 IPR005714 ATPase, type III secretion system, FliI/YscN RY45_13995 IPR013380 ATPase, type III secretion system, H+-transporting RY45_13995 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RY45_13995 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14000 IPR009929 Type III secretion sytem,YscO RY45_14005 IPR013354 Type III secretion system needle length determinant, C-terminal domain RY45_14010 IPR001543 Surface presentation of antigen (SpoA) RY45_14010 IPR003283 Type III secretion system outer membrane, SpaO RY45_14010 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO RY45_14010 IPR036429 RY45_14010 RY45_14015 IPR005773 Yop virulence translocation protein R RY45_14015 IPR005838 Type III secretion system inner membrane P protein RY45_14020 IPR002191 Bacterial export protein family 3 RY45_14020 IPR006306 Type III secretion protein HrpO RY45_14025 IPR002010 Type III secretion system inner membrane R protein RY45_14025 IPR006304 Type III secretion protein SpaR/YscT RY45_14030 IPR006135 Type III secretion system substrate exporter RY45_14030 IPR006307 Type III exporter system, secretion apparatus protein BsaZ RY45_14030 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_14045 IPR006214 Bax inhibitor 1-related RY45_14050 IPR010019 Integral membrane protein, YccS RY45_14050 IPR010020 Integral membrane protein, YccS/YhfK RY45_14050 IPR032692 RY45_14050 RY45_14055 IPR007453 Sulphur transfer protein DsrC/TusE RY45_14055 IPR025526 DsrC-like domain RY45_14060 IPR007730 Sporulation-related domain RY45_14060 IPR036680 RY45_14060 RY45_14065 IPR001645 Folylpolyglutamate synthetase RY45_14065 IPR004101 Mur ligase, C-terminal RY45_14065 IPR013221 Mur ligase, central RY45_14065 IPR018109 Folylpolyglutamate synthetase, conserved site RY45_14065 IPR036565 RY45_14065 RY45_14065 IPR036615 RY45_14065 RY45_14070 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit RY45_14070 IPR029045 ClpP/crotonase-like domain RY45_14070 IPR034733 RY45_14070 RY45_14075 IPR001406 Pseudouridine synthase I, TruA RY45_14075 IPR020095 Pseudouridine synthase I, TruA, C-terminal RY45_14075 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain RY45_14075 IPR020103 Pseudouridine synthase, catalytic domain RY45_14080 IPR020011 Motility protein FimV, C-terminal RY45_14080 IPR020012 Motility protein FimV, N-terminal RY45_14080 IPR038440 RY45_14080 RY45_14085 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site RY45_14085 IPR000534 Semialdehyde dehydrogenase, NAD-binding RY45_14085 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type RY45_14085 IPR012080 Aspartate-semialdehyde dehydrogenase RY45_14085 IPR012280 Semialdehyde dehydrogenase, dimerisation domain RY45_14085 IPR036291 RY45_14085 RY45_14090 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_14090 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RY45_14090 IPR020921 Erythronate-4-phosphate dehydrogenase RY45_14090 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain RY45_14090 IPR036291 RY45_14090 RY45_14090 IPR038251 RY45_14090 RY45_14095 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_14095 IPR036938 RY45_14095 RY45_14100 IPR004872 Lipoprotein NlpA family RY45_14105 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_14105 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_14120 IPR000868 Isochorismatase-like RY45_14120 IPR036380 RY45_14120 RY45_14125 IPR000209 Peptidase S8/S53 domain RY45_14125 IPR002884 Proprotein convertase, P RY45_14125 IPR008979 Galactose-binding domain-like RY45_14125 IPR015500 Peptidase S8, subtilisin-related RY45_14125 IPR022398 Peptidase S8, subtilisin, His-active site RY45_14125 IPR023827 Peptidase S8, subtilisin, Asp-active site RY45_14125 IPR023828 Peptidase S8, subtilisin, Ser-active site RY45_14125 IPR036852 RY45_14125 RY45_14135 IPR001764 Glycoside hydrolase, family 3, N-terminal RY45_14135 IPR002772 Glycoside hydrolase family 3 C-terminal domain RY45_14135 IPR013783 Immunoglobulin-like fold RY45_14135 IPR017853 Glycoside hydrolase, superfamily RY45_14135 IPR019800 Glycoside hydrolase, family 3, active site RY45_14135 IPR026891 Fibronectin type III-like domain RY45_14135 IPR036881 RY45_14135 RY45_14135 IPR036962 RY45_14135 RY45_14140 IPR009057 Homeodomain-like RY45_14140 IPR018060 DNA binding HTH domain, AraC-type RY45_14140 IPR018062 HTH domain AraC-type, conserved site RY45_14140 IPR032687 RY45_14140 RY45_14145 IPR000121 PEP-utilising enzyme, C-terminal RY45_14145 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding RY45_14145 IPR006319 Phosphoenolpyruvate synthase RY45_14145 IPR008279 PEP-utilising enzyme, mobile domain RY45_14145 IPR013815 ATP-grasp fold, subdomain 1 RY45_14145 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_14145 IPR018274 PEP-utilising enzyme, active site RY45_14145 IPR023151 PEP-utilising enzyme, conserved site RY45_14145 IPR036637 RY45_14145 RY45_14150 IPR005177 Bifunctional kinase-pyrophosphorylase RY45_14150 IPR026530 Phosphoenolpyruvate synthase regulatory protein RY45_14160 IPR002293 Amino acid/polyamine transporter I RY45_14160 IPR004840 Amino acid permease, conserved site RY45_14160 IPR004841 Amino acid permease/ SLC12A domain RY45_14165 IPR007497 Protein of unknown function DUF541 RY45_14185 IPR000160 GGDEF domain RY45_14185 IPR001633 EAL domain RY45_14185 IPR029787 Nucleotide cyclase RY45_14185 IPR032244 RY45_14185 RY45_14185 IPR035919 RY45_14185 RY45_14190 IPR010319 Transglutaminase-like cysteine peptidase, predicted RY45_14195 IPR003423 Outer membrane efflux protein RY45_14195 IPR010130 Type I secretion outer membrane protein, TolC RY45_14200 IPR003997 RTX secretion protein D, Gram-negative bacteria RY45_14200 IPR006144 Secretion protein HlyD, conserved site RY45_14200 IPR010129 Type I secretion membrane fusion protein, HlyD RY45_14200 IPR039562 RY45_14200 RY45_14205 IPR003439 ABC transporter-like RY45_14205 IPR003593 AAA+ ATPase domain RY45_14205 IPR011527 ABC transporter type 1, transmembrane domain RY45_14205 IPR017750 ATPase, type I secretion system RY45_14205 IPR017871 ABC transporter, conserved site RY45_14205 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14205 IPR036640 RY45_14205 RY45_14210 IPR005911 Conserved hypothetical protein CHP01212 RY45_14210 IPR006638 Elongator protein 3/MiaB/NifB RY45_14210 IPR007197 Radical SAM RY45_14210 IPR023404 Radical SAM, alpha/beta horseshoe RY45_14210 IPR032432 RY45_14210 RY45_14220 IPR002489 Glutamate synthase, alpha subunit, C-terminal RY45_14220 IPR002932 Glutamate synthase domain RY45_14220 IPR006982 Glutamate synthase, central-N RY45_14220 IPR013785 Aldolase-type TIM barrel RY45_14220 IPR017932 Glutamine amidotransferase type 2 domain RY45_14220 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_14220 IPR036485 RY45_14220 RY45_14225 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 RY45_14225 IPR009051 Alpha-helical ferredoxin RY45_14225 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_14225 IPR028261 Dihydroprymidine dehydrogenase domain II RY45_14225 IPR036188 RY45_14225 RY45_14230 IPR003439 ABC transporter-like RY45_14230 IPR003593 AAA+ ATPase domain RY45_14230 IPR017871 ABC transporter, conserved site RY45_14230 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14230 IPR030679 RY45_14230 RY45_14235 IPR000515 MetI-like domain RY45_14235 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_14235 IPR035906 RY45_14235 RY45_14240 IPR001638 Extracellular solute-binding protein, family 3 RY45_14245 IPR032710 RY45_14245 RY45_14245 IPR037401 RY45_14245 RY45_14250 IPR002935 O-methyltransferase, family 3 RY45_14250 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_14255 IPR000551 MerR-type HTH domain RY45_14255 IPR009061 DNA binding domain, putative RY45_14255 IPR010211 Redox-sensitive transcriptional activator SoxR RY45_14255 IPR015358 Transcription regulator MerR, DNA binding RY45_14260 IPR025337 Domain of unknown function DUF4243 RY45_14270 IPR024079 Metallopeptidase, catalytic domain RY45_14270 IPR029463 Lysine-specific metallo-endopeptidase RY45_14275 IPR021316 Protein of unknown function DUF2913 RY45_14280 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_14280 IPR001650 Helicase, C-terminal RY45_14280 IPR011545 DEAD/DEAH box helicase domain RY45_14280 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_14280 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14285 IPR000182 GNAT domain RY45_14285 IPR016181 Acyl-CoA N-acyltransferase RY45_14290 IPR032816 RY45_14290 RY45_14295 IPR003018 GAF domain RY45_14295 IPR007892 CHASE4 RY45_14295 IPR029016 GAF domain-like RY45_14305 IPR011528 Nuclease-related domain, NERD RY45_14305 IPR013498 DNA topoisomerase, type IA, zn finger RY45_14315 IPR011673 Protein of unknown function DUF1615 RY45_14320 IPR000891 Pyruvate carboxyltransferase RY45_14320 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site RY45_14320 IPR005668 2-isopropylmalate synthase RY45_14320 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain RY45_14320 IPR013785 Aldolase-type TIM barrel RY45_14320 IPR036230 RY45_14320 RY45_14325 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RY45_14325 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain RY45_14325 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain RY45_14325 IPR006275 Carbamoyl-phosphate synthase, large subunit RY45_14325 IPR011607 Methylglyoxal synthase-like domain RY45_14325 IPR016185 Pre-ATP-grasp domain RY45_14325 IPR036897 RY45_14325 RY45_14325 IPR036914 RY45_14325 RY45_14330 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain RY45_14330 IPR006274 Carbamoyl-phosphate synthase, small subunit RY45_14330 IPR017926 Glutamine amidotransferase RY45_14330 IPR029062 Class I glutamine amidotransferase-like RY45_14330 IPR036480 RY45_14330 RY45_14335 IPR000846 Dihydrodipicolinate reductase, N-terminal RY45_14335 IPR022663 Dihydrodipicolinate reductase, C-terminal RY45_14335 IPR022664 Dihydrodipicolinate reductase, conserved site RY45_14335 IPR023940 Dihydrodipicolinate reductase, bacterial RY45_14335 IPR036291 RY45_14335 RY45_14340 IPR018461 Na+/H+ antiporter, NhaC-like RY45_14345 IPR002698 5-formyltetrahydrofolate cyclo-ligase RY45_14345 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RY45_14345 IPR037171 RY45_14345 RY45_14350 IPR004788 Ribose 5-phosphate isomerase, type A RY45_14350 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup RY45_14350 IPR037171 RY45_14350 RY45_14360 IPR002912 ACT domain RY45_14360 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_14360 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RY45_14360 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RY45_14360 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_14360 IPR036291 RY45_14360 RY45_14365 IPR000829 Diacylglycerol kinase, prokaryotic RY45_14365 IPR036945 RY45_14365 RY45_14370 IPR006218 DAHP synthetase I/KDSA RY45_14370 IPR006219 DHAP synthase, class 1 RY45_14370 IPR013785 Aldolase-type TIM barrel RY45_14375 IPR000182 GNAT domain RY45_14375 IPR016181 Acyl-CoA N-acyltransferase RY45_14375 IPR024170 Aminoglycoside N6-acetyltransferase RY45_14380 IPR003439 ABC transporter-like RY45_14380 IPR003593 AAA+ ATPase domain RY45_14380 IPR017871 ABC transporter, conserved site RY45_14380 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14385 IPR000522 ABC transporter, permease protein RY45_14385 IPR037294 RY45_14385 RY45_14390 IPR001638 Extracellular solute-binding protein, family 3 RY45_14395 IPR007437 Protein of unknown function DUF486 RY45_14400 IPR001482 Type II secretion system protein E RY45_14400 IPR003593 AAA+ ATPase domain RY45_14400 IPR006321 Pilus retraction protein PilT RY45_14400 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14405 IPR005835 Nucleotidyl transferase RY45_14405 IPR005836 ADP-glucose pyrophosphorylase, conserved site RY45_14405 IPR011004 Trimeric LpxA-like RY45_14405 IPR011831 Glucose-1-phosphate adenylyltransferase RY45_14405 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial RY45_14405 IPR029044 Nucleotide-diphospho-sugar transferases RY45_14410 IPR011051 RmlC-like cupin domain RY45_14410 IPR014710 RmlC-like jelly roll fold RY45_14410 IPR027565 Cupin fold metalloprotein, WbuC family RY45_14415 IPR015102 Transcriptional regulator HTH-type, FeoC RY45_14415 IPR036390 RY45_14415 RY45_14420 IPR003373 Ferrous iron transport protein B RY45_14420 IPR005225 Small GTP-binding protein domain RY45_14420 IPR006073 GTP binding domain RY45_14420 IPR011640 Ferrous iron transport protein B, C-terminal RY45_14420 IPR011642 Nucleoside recognition Gate RY45_14420 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14420 IPR030389 RY45_14420 RY45_14425 IPR007167 Ferrous iron transporter FeoA domain RY45_14425 IPR008988 Transcriptional repressor, C-terminal RY45_14425 IPR038157 RY45_14425 RY45_14430 IPR001950 Translation initiation factor SUI1 RY45_14430 IPR005872 Archaeal/bacterial translation initiation factor SUI1 RY45_14430 IPR036877 RY45_14430 RY45_14435 IPR001727 Uncharacterised protein family UPF0016 RY45_14440 IPR018677 Protein of unknown function DUF2157, membrane RY45_14445 IPR025513 Domain of unknown function DUF4401 RY45_14450 IPR025833 GDYXXLXY protein RY45_14455 IPR001638 Extracellular solute-binding protein, family 3 RY45_14460 IPR001638 Extracellular solute-binding protein, family 3 RY45_14465 IPR000160 GGDEF domain RY45_14465 IPR003018 GAF domain RY45_14465 IPR029016 GAF domain-like RY45_14465 IPR029787 Nucleotide cyclase RY45_14475 IPR000477 Reverse transcriptase domain RY45_14475 IPR036526 RY45_14475 RY45_14480 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RY45_14480 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_14480 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR RY45_14480 IPR015803 Cysteine-tRNA ligase RY45_14480 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase RY45_14480 IPR032678 RY45_14480 RY45_14485 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain RY45_14485 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site RY45_14485 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase RY45_14485 IPR029000 Cyclophilin-like domain RY45_14490 IPR025365 Protein of unknown function DUF4269 RY45_14495 IPR004843 Calcineurin-like phosphoesterase domain, apaH type RY45_14495 IPR010138 UDP-2,3-diacylglucosamine hydrolase RY45_14495 IPR029052 Metallo-dependent phosphatase-like RY45_14500 IPR005614 NrfD family RY45_14500 IPR017566 NrfD RY45_14505 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14505 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14510 IPR010177 Doubled CXXCH motif RY45_14510 IPR023155 Cytochrome c-552/4 RY45_14510 IPR036280 RY45_14510 RY45_14515 IPR009056 Cytochrome c-like domain RY45_14515 IPR024167 Cytochrome c4 RY45_14515 IPR036909 RY45_14515 RY45_14520 IPR020014 Decahaem cytochrome, c-type, OmcA/MtrC RY45_14520 IPR036280 RY45_14520 RY45_14525 IPR010177 Doubled CXXCH motif RY45_14525 IPR020015 Decaheme cytochrome, c-type, DmsE RY45_14525 IPR036280 RY45_14525 RY45_14530 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB RY45_14535 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_14535 IPR009875 PilZ domain RY45_14540 IPR000014 PAS domain RY45_14540 IPR001610 PAC motif RY45_14540 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_14540 IPR004090 Chemotaxis methyl-accepting receptor RY45_14540 IPR013655 PAS fold-3 RY45_14540 IPR035965 RY45_14540 RY45_14560 IPR000462 CDP-alcohol phosphatidyltransferase RY45_14560 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase RY45_14565 IPR000305 GIY-YIG nuclease superfamily RY45_14565 IPR001162 UvrC family homology region RY45_14565 IPR001943 UVR domain RY45_14565 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 RY45_14565 IPR004791 UvrABC system, subunit C RY45_14565 IPR010994 RuvA domain 2-like RY45_14565 IPR035901 RY45_14565 RY45_14565 IPR036876 RY45_14565 RY45_14565 IPR038476 RY45_14565 RY45_14570 IPR000792 Transcription regulator LuxR, C-terminal RY45_14570 IPR001789 Signal transduction response regulator, receiver domain RY45_14570 IPR011006 CheY-like superfamily RY45_14570 IPR016032 Signal transduction response regulator, C-terminal effector RY45_14575 IPR003329 Acylneuraminate cytidylyltransferase RY45_14575 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase RY45_14575 IPR029044 Nucleotide-diphospho-sugar transferases RY45_14580 IPR005651 Uncharacterised protein family UPF0434/Trm112 RY45_14580 IPR038053 RY45_14580 RY45_14585 IPR003758 Tetraacyldisaccharide 4'-kinase RY45_14585 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14590 IPR003439 ABC transporter-like RY45_14590 IPR003593 AAA+ ATPase domain RY45_14590 IPR011527 ABC transporter type 1, transmembrane domain RY45_14590 IPR011917 ABC transporter, lipid A export, MsbA RY45_14590 IPR017871 ABC transporter, conserved site RY45_14590 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14590 IPR036640 RY45_14590 RY45_14595 IPR001279 Beta-lactamase-like RY45_14595 IPR004477 ComEC/Rec2-related protein RY45_14595 IPR004797 Competence protein ComEC/Rec2 RY45_14595 IPR025405 Domain of unknown function DUF4131 RY45_14595 IPR036866 RY45_14595 RY45_14600 IPR018639 Domain of unknown function DUF2062 RY45_14605 IPR018639 Domain of unknown function DUF2062 RY45_14610 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14610 IPR033186 RY45_14610 RY45_14615 IPR010438 Bor RY45_14620 IPR010438 Bor RY45_14630 IPR009440 Plasmid segregation protein ParM/StbA RY45_14635 IPR000073 Alpha/beta hydrolase fold-1 RY45_14635 IPR029058 Alpha/Beta hydrolase fold RY45_14640 IPR003439 ABC transporter-like RY45_14640 IPR003593 AAA+ ATPase domain RY45_14640 IPR005116 Transport-associated OB, type 1 RY45_14640 IPR008995 Molybdate/tungstate binding, C-terminal RY45_14640 IPR011868 Molybdate ABC transporter, ATP-binding protein RY45_14640 IPR017871 ABC transporter, conserved site RY45_14640 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14645 IPR000515 MetI-like domain RY45_14645 IPR011867 Molybdate ABC transporter, permease protein RY45_14645 IPR035906 RY45_14645 RY45_14650 IPR005950 Molybdenum ABC transporter, periplasmic binding protein RY45_14655 IPR003448 Molybdopterin biosynthesis MoaE RY45_14655 IPR036563 RY45_14655 RY45_14660 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 RY45_14660 IPR012675 Beta-grasp domain RY45_14660 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RY45_14665 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain RY45_14665 IPR023045 Molybdenum cofactor biosynthesis C RY45_14665 IPR036522 RY45_14665 RY45_14670 IPR001453 Molybdopterin binding domain RY45_14670 IPR012245 Molybdenum cofactor biosynthesis protein MoaB RY45_14670 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria RY45_14670 IPR036425 RY45_14670 RY45_14675 IPR005126 NapC/NirT cytochrome c, N-terminal RY45_14675 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT RY45_14675 IPR024717 Denitrification system component NapC/NirT/NrfH RY45_14675 IPR036280 RY45_14675 RY45_14675 IPR038266 RY45_14675 RY45_14680 IPR005591 Nitrate reductase cytochrome c-type subunit NapB RY45_14680 IPR036280 RY45_14680 RY45_14685 IPR011886 Ferredoxin-type protein, NapH/MauN family RY45_14685 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14685 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14690 IPR004494 MauM/NapG ferredoxin-type protein RY45_14690 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14690 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14695 IPR006656 Molybdopterin oxidoreductase RY45_14695 IPR006657 Molydopterin dinucleotide-binding domain RY45_14695 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RY45_14695 IPR009010 Aspartate decarboxylase-like domain RY45_14695 IPR010051 Periplasmic nitrate reductase, large subunit RY45_14695 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_14695 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site RY45_14700 IPR005623 Chaperone NapD, nitrate reductase assembly RY45_14705 IPR004496 Ferredoxin-type protein NapF RY45_14705 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14705 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14710 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site RY45_14710 IPR006638 Elongator protein 3/MiaB/NifB RY45_14710 IPR007197 Radical SAM RY45_14710 IPR010505 Molybdenum cofactor synthesis C-terminal RY45_14710 IPR013483 Molybdenum cofactor biosynthesis protein A RY45_14710 IPR013785 Aldolase-type TIM barrel RY45_14715 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_14715 IPR003660 HAMP linker domain RY45_14715 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain RY45_14715 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing RY45_14715 IPR029095 NarX-like, N-terminal RY45_14715 IPR036890 RY45_14715 RY45_14720 IPR000792 Transcription regulator LuxR, C-terminal RY45_14720 IPR001789 Signal transduction response regulator, receiver domain RY45_14720 IPR011006 CheY-like superfamily RY45_14720 IPR016032 Signal transduction response regulator, C-terminal effector RY45_14725 IPR003111 Peptidase S16, lon N-terminal RY45_14725 IPR015947 PUA-like domain RY45_14730 IPR001789 Signal transduction response regulator, receiver domain RY45_14730 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_14730 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_14730 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_14730 IPR011006 CheY-like superfamily RY45_14730 IPR029016 GAF domain-like RY45_14730 IPR035965 RY45_14730 RY45_14730 IPR036097 RY45_14730 RY45_14730 IPR036890 RY45_14730 RY45_14735 IPR013702 FIST domain, N-terminal RY45_14735 IPR019494 FIST C domain RY45_14740 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 RY45_14740 IPR010119 Gluconeogenesis factor RY45_14740 IPR038136 RY45_14740 RY45_14745 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RY45_14745 IPR036641 RY45_14745 RY45_14750 IPR026869 Putative glutamine amidotransferase type 2 RY45_14750 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_14755 IPR001347 Sugar isomerase (SIS) RY45_14755 IPR004515 Phosphoheptose isomerase RY45_14760 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RY45_14760 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain RY45_14760 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RY45_14760 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type RY45_14760 IPR036250 RY45_14760 RY45_14760 IPR037069 RY45_14760 RY45_14765 IPR003607 HD/PDEase domain RY45_14765 IPR006674 HD domain RY45_14765 IPR011006 CheY-like superfamily RY45_14765 IPR021800 Domain of unknown function DUF3369 RY45_14770 IPR000644 CBS domain RY45_14770 IPR006667 SLC41 divalent cation transporters, integral membrane domain RY45_14770 IPR006668 Magnesium transporter, MgtE intracellular domain RY45_14770 IPR006669 Magnesium transporter MgtE RY45_14770 IPR036739 RY45_14770 RY45_14770 IPR038048 RY45_14770 RY45_14775 IPR001029 Flagellin, D0/D1 domain RY45_14775 IPR013384 Flagellar hook-associated protein 3 RY45_14780 IPR002371 Flagellar hook-associated protein, FlgK RY45_14780 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14785 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain RY45_14785 IPR013377 Flagellar rod assembly protein/muramidase FlgJ RY45_14785 IPR019301 Flagellar protein FlgJ, N-terminal RY45_14785 IPR023346 Lysozyme-like domain RY45_14790 IPR001782 Flagellar P-ring protein RY45_14795 IPR000527 Flagellar L-ring protein RY45_14800 IPR001444 Flagellar basal body rod protein, N-terminal RY45_14800 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14800 IPR012834 Flagellar basal-body rod FlgG RY45_14800 IPR019776 Flagellar basal body rod protein, conserved site RY45_14800 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RY45_14800 IPR037925 RY45_14800 RY45_14805 IPR001444 Flagellar basal body rod protein, N-terminal RY45_14805 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14805 IPR012836 Flagellar basal-body rod FlgF RY45_14805 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RY45_14805 IPR037925 RY45_14805 RY45_14810 IPR001444 Flagellar basal body rod protein, N-terminal RY45_14810 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14810 IPR011491 Flagellar basal body FlaE RY45_14810 IPR019776 Flagellar basal body rod protein, conserved site RY45_14810 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RY45_14810 IPR037058 RY45_14810 RY45_14810 IPR037925 RY45_14810 RY45_14815 IPR005648 Flagellar hook capping protein RY45_14815 IPR025963 FlgD Tudor-like domain RY45_14815 IPR025965 FlgD Ig-like domain RY45_14820 IPR001444 Flagellar basal body rod protein, N-terminal RY45_14820 IPR006299 Flagellar basal-body rod protein FlgC RY45_14820 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14820 IPR019776 Flagellar basal body rod protein, conserved site RY45_14825 IPR001444 Flagellar basal body rod protein, N-terminal RY45_14825 IPR006300 Flagellar basal-body rod protein FlgB RY45_14825 IPR019776 Flagellar basal body rod protein, conserved site RY45_14830 IPR000780 MCP methyltransferase, CheR-type RY45_14830 IPR022641 MCP methyltransferase, CheR-type, all-alpha domain, N-terminal RY45_14830 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RY45_14830 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_14830 IPR036804 RY45_14830 RY45_14835 IPR001789 Signal transduction response regulator, receiver domain RY45_14835 IPR002545 CheW-like protein RY45_14835 IPR011006 CheY-like superfamily RY45_14835 IPR024181 Chemotaxis response regulator CheV RY45_14835 IPR036061 RY45_14835 RY45_14840 IPR013974 SAF domain RY45_14840 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RY45_14845 IPR007412 Anti-sigma-28 factor, FlgM RY45_14845 IPR031316 RY45_14845 RY45_14845 IPR035890 RY45_14845 RY45_14850 IPR007809 FlgN-like domain RY45_14850 IPR036679 RY45_14850 RY45_14855 IPR000979 Phosphodiesterase MJ0936/Vps29 RY45_14855 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type RY45_14855 IPR029052 Metallo-dependent phosphatase-like RY45_14860 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_14860 IPR030678 RY45_14860 RY45_14865 IPR000620 Drug/metabolite transporter RY45_14870 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F RY45_14870 IPR002942 RNA-binding S4 domain RY45_14870 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_14870 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site RY45_14870 IPR020103 Pseudouridine synthase, catalytic domain RY45_14870 IPR036986 RY45_14870 RY45_14875 IPR003607 HD/PDEase domain RY45_14875 IPR006675 Uncharacterised domain HDIG RY45_14875 IPR021812 Protein of unknown function DUF3391 RY45_14885 IPR001585 Transaldolase RY45_14885 IPR004731 Transaldolase 3A/3B RY45_14885 IPR013785 Aldolase-type TIM barrel RY45_14885 IPR018225 Transaldolase, active site RY45_14890 IPR001989 Radical-activating enzyme, conserved site RY45_14890 IPR007197 Radical SAM RY45_14890 IPR012839 Glycyl radical enzyme activase RY45_14890 IPR013785 Aldolase-type TIM barrel RY45_14895 IPR001150 Glycine radical domain RY45_14895 IPR004184 Pyruvate formate lyase domain RY45_14895 IPR005949 Formate acetyltransferase RY45_14895 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family RY45_14895 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RY45_14900 IPR001034 HTH DeoR N-terminal domain RY45_14900 IPR014036 DeoR C-terminal sensor domain RY45_14900 IPR018356 Transcription regulator, HTH DeoR-type, conserved site RY45_14900 IPR036388 RY45_14900 RY45_14900 IPR036390 RY45_14900 RY45_14900 IPR037171 RY45_14900 RY45_14905 IPR000620 Drug/metabolite transporter RY45_14910 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_14910 IPR030678 RY45_14910 RY45_14915 IPR021284 Protein of unknown function DUF2750 RY45_14925 IPR013468 Conserved hypothetical protein CHP02647 RY45_14935 IPR002059 Cold-shock protein, DNA-binding RY45_14935 IPR011129 Cold shock protein RY45_14935 IPR012156 Cold shock, CspA RY45_14935 IPR012340 Nucleic acid-binding, OB-fold RY45_14935 IPR019844 Cold-shock conserved site RY45_14940 IPR000089 Biotin/lipoyl attachment RY45_14940 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain RY45_14940 IPR004167 E3 binding RY45_14940 IPR011053 Single hybrid motif RY45_14940 IPR023213 Chloramphenicol acetyltransferase-like domain RY45_14940 IPR036625 RY45_14940 RY45_14945 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_14945 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II RY45_14945 IPR029061 Thiamin diphosphate-binding fold RY45_14945 IPR033248 RY45_14945 RY45_14950 IPR001017 Dehydrogenase, E1 component RY45_14950 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha RY45_14950 IPR029061 Thiamin diphosphate-binding fold RY45_14955 IPR007036 Succinylglutamate desuccinylase/aspartoacylase RY45_14955 IPR016681 Succinylglutamate desuccinylase RY45_14960 IPR009506 Protein of unknown function DUF1127 RY45_14965 IPR008865 DNA replication terminus site-binding protein RY45_14965 IPR036381 RY45_14965 RY45_14965 IPR036384 RY45_14965 RY45_14970 IPR000330 SNF2-related RY45_14970 IPR001650 Helicase, C-terminal RY45_14970 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_14970 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14970 IPR038718 RY45_14970 RY45_14975 IPR007432 Protein of unknown function DUF480 RY45_14975 IPR036388 RY45_14975 RY45_14975 IPR036390 RY45_14975 RY45_14980 IPR007016 O-antigen ligase-related RY45_14980 IPR021797 Protein of unknown function DUF3366 RY45_14980 IPR031726 RY45_14980 RY45_14985 IPR003856 Lipopolysaccharide biosynthesis RY45_14985 IPR032807 RY45_14985 RY45_14990 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related RY45_14990 IPR011051 RmlC-like cupin domain RY45_14990 IPR014710 RmlC-like jelly roll fold RY45_14995 IPR005835 Nucleotidyl transferase RY45_14995 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form RY45_14995 IPR029044 Nucleotide-diphospho-sugar transferases RY45_15000 IPR005913 dTDP-4-dehydrorhamnose reductase RY45_15000 IPR029903 RY45_15000 RY45_15000 IPR036291 RY45_15000 RY45_15005 IPR005888 dTDP-glucose 4,6-dehydratase RY45_15005 IPR016040 NAD(P)-binding domain RY45_15005 IPR036291 RY45_15005 RY45_15010 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RY45_15010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_15010 IPR036291 RY45_15010 RY45_15015 IPR003362 Bacterial sugar transferase RY45_15020 IPR001296 Glycosyl transferase, family 1 RY45_15020 IPR028098 Glycosyltransferase subfamily 4, N-terminal domain RY45_15025 IPR001962 Asparagine synthase RY45_15025 IPR006426 Asparagine synthase, glutamine-hydrolyzing RY45_15025 IPR017932 Glutamine amidotransferase type 2 domain RY45_15025 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_15030 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain RY45_15030 IPR036291 RY45_15030 RY45_15035 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal RY45_15035 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_15035 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation RY45_15035 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal RY45_15035 IPR017476 UDP-glucose/GDP-mannose dehydrogenase RY45_15035 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase RY45_15035 IPR036220 RY45_15035 RY45_15035 IPR036291 RY45_15035 RY45_15045 IPR003423 Outer membrane efflux protein RY45_15045 IPR010131 RND efflux system, outer membrane lipoprotein, NodT RY45_15050 IPR001036 Acriflavin resistance protein RY45_15050 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 RY45_15050 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15055 IPR006143 RND efflux pump, membrane fusion protein RY45_15055 IPR032317 RY45_15055 RY45_15060 IPR001647 DNA-binding HTH domain, TetR-type RY45_15060 IPR009057 Homeodomain-like RY45_15060 IPR013572 Transcription regulator MAATS, C-terminal RY45_15060 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_15060 IPR036271 RY45_15060 RY45_15065 IPR013216 Methyltransferase type 11 RY45_15065 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_15070 IPR001991 Sodium:dicarboxylate symporter RY45_15070 IPR036458 RY45_15070 RY45_15075 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_15080 IPR003703 Acyl-CoA thioesterase RY45_15080 IPR029069 HotDog domain RY45_15085 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F RY45_15085 IPR002942 RNA-binding S4 domain RY45_15085 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_15085 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site RY45_15085 IPR020103 Pseudouridine synthase, catalytic domain RY45_15085 IPR036986 RY45_15085 RY45_15090 IPR005234 Chromosome segregation/condensation protein ScpB RY45_15090 IPR036388 RY45_15090 RY45_15090 IPR036390 RY45_15090 RY45_15095 IPR003768 Prokaryotic chromosome segregation/condensation protein ScpA RY45_15100 IPR006070 YrdC-like domain RY45_15100 IPR017945 DHBP synthase RibB-like alpha/beta domain RY45_15105 IPR003141 Polymerase/histidinol phosphatase, N-terminal RY45_15105 IPR004013 PHP, C-terminal RY45_15105 IPR016195 Polymerase/histidinol phosphatase-like RY45_15110 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial RY45_15110 IPR005801 ADC synthase RY45_15110 IPR006805 Anthranilate synthase component I, N-terminal RY45_15110 IPR015890 Chorismate binding, C-terminal RY45_15110 IPR019999 Anthranilate synthase component I - like RY45_15115 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain RY45_15115 IPR017926 Glutamine amidotransferase RY45_15115 IPR029062 Class I glutamine amidotransferase-like RY45_15120 IPR000312 Glycosyl transferase, family 3 RY45_15120 IPR005940 Anthranilate phosphoribosyl transferase RY45_15120 IPR017459 Glycosyl transferase family 3, N-terminal domain RY45_15120 IPR035902 RY45_15120 RY45_15120 IPR036320 RY45_15120 RY45_15125 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain RY45_15125 IPR001468 Indole-3-glycerol phosphate synthase, conserved site RY45_15125 IPR011060 Ribulose-phosphate binding barrel RY45_15125 IPR013785 Aldolase-type TIM barrel RY45_15125 IPR013798 Indole-3-glycerol phosphate synthase RY45_15130 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_15130 IPR006653 Tryptophan synthase, beta chain, conserved site RY45_15130 IPR006654 Tryptophan synthase, beta chain RY45_15130 IPR023026 Tryptophan synthase beta chain/beta chain-like RY45_15130 IPR036052 RY45_15130 RY45_15135 IPR002028 Tryptophan synthase, alpha chain RY45_15135 IPR011060 Ribulose-phosphate binding barrel RY45_15135 IPR013785 Aldolase-type TIM barrel RY45_15135 IPR018204 Tryptophan synthase, alpha chain, active site RY45_15145 IPR007404 Protein of unknown function DUF457 RY45_15150 IPR021724 Protein of unknown function DUF3297 RY45_15155 IPR001064 Beta/gamma crystallin RY45_15155 IPR011024 Gamma-crystallin-related RY45_15160 IPR014453 Inhibitor of vertebrate lysozyme RY45_15160 IPR036501 RY45_15160 RY45_15165 IPR002668 Concentrative nucleoside transporter N-terminal domain RY45_15165 IPR011642 Nucleoside recognition Gate RY45_15165 IPR011657 Concentrative nucleoside transporter C-terminal domain RY45_15165 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial RY45_15175 IPR003848 Domain of unknown function DUF218 RY45_15175 IPR011990 Tetratricopeptide-like helical domain RY45_15180 IPR008523 Lactobacillus phage LBR48, DUF805 RY45_15185 IPR000073 Alpha/beta hydrolase fold-1 RY45_15185 IPR029058 Alpha/Beta hydrolase fold RY45_15190 IPR011701 Major facilitator superfamily RY45_15190 IPR036259 RY45_15190 RY45_15195 IPR000537 UbiA prenyltransferase family RY45_15195 IPR006369 Protohaem IX farnesyltransferase RY45_15195 IPR030470 RY45_15195 RY45_15200 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes RY45_15200 IPR014210 Cytochrome o ubiquinol oxidase subunit IV RY45_15205 IPR000298 Cytochrome c oxidase subunit III domain RY45_15205 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle RY45_15205 IPR014206 Cytochrome o ubiquinol oxidase, subunit III RY45_15205 IPR035973 RY45_15205 RY45_15210 IPR000883 Cytochrome c oxidase subunit I RY45_15210 IPR014207 Cytochrome o ubiquinol oxidase, subunit I RY45_15210 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site RY45_15210 IPR036927 RY45_15210 RY45_15215 IPR002429 Cytochrome c oxidase subunit II C-terminal RY45_15215 IPR006333 Cytochrome o ubiquinol oxidase subunit II RY45_15215 IPR008972 Cupredoxin RY45_15215 IPR010514 COX aromatic rich motif RY45_15215 IPR036257 RY45_15215 RY45_15220 IPR036188 RY45_15220 RY45_15225 IPR009056 Cytochrome c-like domain RY45_15225 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit RY45_15225 IPR036909 RY45_15225 RY45_15230 IPR022090 Protein of unknown function DUF3634 RY45_15235 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain RY45_15235 IPR036452 RY45_15235 RY45_15240 IPR010282 Uncharacterised protein family HutD/Ves RY45_15240 IPR011051 RmlC-like cupin domain RY45_15240 IPR014710 RmlC-like jelly roll fold RY45_15250 IPR000923 Blue (type 1) copper domain RY45_15250 IPR008972 Cupredoxin RY45_15250 IPR014068 Azurin, proteobacteria RY45_15255 IPR003374 ApbE-like domain RY45_15255 IPR024932 Flavin transferase ApbE RY45_15260 IPR005829 Sugar transporter, conserved site RY45_15260 IPR011701 Major facilitator superfamily RY45_15260 IPR036259 RY45_15260 RY45_15265 IPR001789 Signal transduction response regulator, receiver domain RY45_15265 IPR011006 CheY-like superfamily RY45_15265 IPR011990 Tetratricopeptide-like helical domain RY45_15265 IPR019734 Tetratricopeptide repeat RY45_15270 IPR001646 Pentapeptide repeat RY45_15270 IPR013099 Two pore domain potassium channel domain RY45_15275 IPR004808 AP endonuclease 1 RY45_15275 IPR005135 Endonuclease/exonuclease/phosphatase RY45_15275 IPR020847 AP endonuclease 1, binding site RY45_15275 IPR036691 RY45_15275 RY45_15280 IPR006143 RND efflux pump, membrane fusion protein RY45_15280 IPR039562 RY45_15280 RY45_15285 IPR001036 Acriflavin resistance protein RY45_15285 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 RY45_15285 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15295 IPR006143 RND efflux pump, membrane fusion protein RY45_15295 IPR021647 Copper binding periplasmic protein CusF RY45_15295 IPR032317 RY45_15295 RY45_15300 IPR001036 Acriflavin resistance protein RY45_15300 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA RY45_15300 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15305 IPR021647 Copper binding periplasmic protein CusF RY45_15315 IPR002129 Pyridoxal phosphate-dependent decarboxylase RY45_15315 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_15315 IPR015424 Pyridoxal phosphate-dependent transferase RY45_15320 IPR004143 Biotin/lipoate A/B protein ligase RY45_15320 IPR004562 Lipoyltransferase/lipoate-protein ligase RY45_15320 IPR019491 Lipoate protein ligase, C-terminal RY45_15320 IPR023741 Lipoate-protein ligase A RY45_15325 IPR000014 PAS domain RY45_15325 IPR000160 GGDEF domain RY45_15325 IPR001610 PAC motif RY45_15325 IPR012312 Haemerythrin/HHE cation-binding motif RY45_15325 IPR012827 Haemerythrin-like, metal-binding domain RY45_15325 IPR013656 PAS fold-4 RY45_15325 IPR015168 SsuA/THI5-like RY45_15325 IPR016131 Haemerythrin, iron-binding site RY45_15325 IPR029787 Nucleotide cyclase RY45_15325 IPR035938 RY45_15325 RY45_15325 IPR035965 RY45_15325 RY45_15330 IPR001036 Acriflavin resistance protein RY45_15330 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15335 IPR006143 RND efflux pump, membrane fusion protein RY45_15335 IPR032317 RY45_15335 RY45_15345 IPR007272 Sulphur transport domain RY45_15350 IPR001845 HTH ArsR-type DNA-binding domain RY45_15350 IPR036388 RY45_15350 RY45_15350 IPR036390 RY45_15350 RY45_15355 IPR021309 Protein of unknown function DUF2892 RY45_15365 IPR003416 MgtC/SapB/SrpB transporter RY45_15370 IPR001305 Heat shock protein DnaJ, cysteine-rich domain RY45_15370 IPR001623 DnaJ domain RY45_15370 IPR002939 Chaperone DnaJ, C-terminal RY45_15370 IPR008971 HSP40/DnaJ peptide-binding RY45_15370 IPR012724 Chaperone DnaJ RY45_15370 IPR018253 DnaJ domain, conserved site RY45_15370 IPR036410 RY45_15370 RY45_15370 IPR036869 RY45_15370 RY45_15375 IPR012725 Chaperone DnaK RY45_15375 IPR013126 Heat shock protein 70 family RY45_15375 IPR018181 Heat shock protein 70, conserved site RY45_15375 IPR029047 Heat shock protein 70kD, peptide-binding domain RY45_15375 IPR029048 Heat shock protein 70kD, C-terminal domain RY45_15380 IPR000740 GrpE nucleotide exchange factor RY45_15380 IPR009012 GrpE nucleotide exchange factor, head RY45_15380 IPR013805 GrpE nucleotide exchange factor, coiled-coil RY45_15385 IPR002504 Inorganic polyphosphate/ATP-NAD kinase RY45_15385 IPR016064 ATP-NAD kinase-like domain RY45_15385 IPR017437 ATP-NAD kinase, PpnK-type, all-beta RY45_15385 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 RY45_15390 IPR003395 RecF/RecN/SMC, N-terminal RY45_15390 IPR004604 DNA recombination/repair protein RecN RY45_15390 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15395 IPR001667 DDH domain RY45_15395 IPR004097 DHHA2 domain RY45_15395 IPR038222 RY45_15395 RY45_15395 IPR038763 RY45_15395 RY45_15400 IPR006016 UspA RY45_15400 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_15405 IPR006143 RND efflux pump, membrane fusion protein RY45_15405 IPR032317 RY45_15405 RY45_15410 IPR003439 ABC transporter-like RY45_15410 IPR003593 AAA+ ATPase domain RY45_15410 IPR003838 Permease FtsX-like RY45_15410 IPR017871 ABC transporter, conserved site RY45_15410 IPR025857 MacB-like periplasmic core domain RY45_15410 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15415 IPR003423 Outer membrane efflux protein RY45_15415 IPR010131 RND efflux system, outer membrane lipoprotein, NodT RY45_15420 IPR007037 Siderophore-interacting protein RY45_15420 IPR013113 FAD-binding 9, siderophore-interacting RY45_15420 IPR017938 Riboflavin synthase-like beta-barrel RY45_15420 IPR039261 RY45_15420 RY45_15430 IPR006218 DAHP synthetase I/KDSA RY45_15430 IPR006219 DHAP synthase, class 1 RY45_15430 IPR013785 Aldolase-type TIM barrel RY45_15435 IPR001801 Histone-like protein H-NS RY45_15435 IPR027444 Histone-like protein H-NS, C-terminal domain RY45_15435 IPR027454 Histone-like protein H-NS family, oligomerisation domain RY45_15435 IPR037150 RY45_15435 RY45_15440 IPR000182 GNAT domain RY45_15440 IPR016181 Acyl-CoA N-acyltransferase RY45_15445 IPR013538 Activator of Hsp90 ATPase homologue 1-like RY45_15445 IPR023393 START-like domain RY45_15450 IPR008523 Lactobacillus phage LBR48, DUF805 RY45_15465 IPR006076 FAD dependent oxidoreductase RY45_15465 IPR036188 RY45_15465 RY45_15470 IPR001387 Cro/C1-type helix-turn-helix domain RY45_15470 IPR010982 Lambda repressor-like, DNA-binding domain RY45_15470 IPR011051 RmlC-like cupin domain RY45_15470 IPR013096 Cupin 2, conserved barrel RY45_15470 IPR014710 RmlC-like jelly roll fold RY45_15475 IPR010102 Succinate semialdehyde dehydrogenase RY45_15475 IPR015590 Aldehyde dehydrogenase domain RY45_15475 IPR016160 Aldehyde dehydrogenase, cysteine active site RY45_15475 IPR016161 Aldehyde/histidinol dehydrogenase RY45_15475 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_15475 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_15475 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RY45_15480 IPR004632 4-aminobutyrate aminotransferase, bacterial RY45_15480 IPR005814 Aminotransferase class-III RY45_15480 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_15480 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_15480 IPR015424 Pyridoxal phosphate-dependent transferase RY45_15485 IPR002293 Amino acid/polyamine transporter I RY45_15495 IPR002293 Amino acid/polyamine transporter I RY45_15505 IPR003841 Sodium-dependent phosphate transport protein RY45_15510 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal RY45_15510 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain RY45_15515 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B RY45_15515 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type RY45_15520 IPR000014 PAS domain RY45_15520 IPR001638 Extracellular solute-binding protein, family 3 RY45_15520 IPR001789 Signal transduction response regulator, receiver domain RY45_15520 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_15520 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_15520 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_15520 IPR011006 CheY-like superfamily RY45_15520 IPR013656 PAS fold-4 RY45_15520 IPR019594 Glutamate receptor, L-glutamate/glycine-binding RY45_15520 IPR035965 RY45_15520 RY45_15520 IPR036097 RY45_15520 RY45_15520 IPR036890 RY45_15520 RY45_15525 IPR000595 Cyclic nucleotide-binding domain RY45_15525 IPR014710 RmlC-like jelly roll fold RY45_15525 IPR018490 Cyclic nucleotide-binding-like RY45_15530 IPR011701 Major facilitator superfamily RY45_15530 IPR036259 RY45_15530 RY45_15535 IPR000845 Nucleoside phosphorylase domain RY45_15535 IPR004402 Purine nucleoside phosphorylase DeoD-type RY45_15535 IPR035994 RY45_15535 RY45_15550 IPR022548 Domain of unknown function DUF2846 RY45_15560 IPR003439 ABC transporter-like RY45_15560 IPR003593 AAA+ ATPase domain RY45_15560 IPR017871 ABC transporter, conserved site RY45_15560 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15570 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RY45_15570 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_15570 IPR004450 Threonine synthase-like RY45_15570 IPR029144 Threonine synthase, N-terminal RY45_15570 IPR036052 RY45_15570 RY45_15570 IPR037158 RY45_15570 RY45_15575 IPR000870 Homoserine kinase RY45_15575 IPR006203 GHMP kinase, ATP-binding, conserved site RY45_15575 IPR006204 GHMP kinase N-terminal domain RY45_15575 IPR013750 GHMP kinase, C-terminal domain RY45_15575 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_15575 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_15575 IPR036554 RY45_15575 RY45_15580 IPR001048 Aspartate/glutamate/uridylate kinase RY45_15580 IPR001341 Aspartate kinase domain RY45_15580 IPR001342 Homoserine dehydrogenase, catalytic RY45_15580 IPR002912 ACT domain RY45_15580 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding RY45_15580 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I RY45_15580 IPR018042 Aspartate kinase, conserved site RY45_15580 IPR019811 Homoserine dehydrogenase, conserved site RY45_15580 IPR027795 GATS-like ACT domain RY45_15580 IPR036291 RY45_15580 RY45_15580 IPR036393 RY45_15580 RY45_15585 IPR001537 tRNA/rRNA methyltransferase, SpoU type RY45_15585 IPR004384 RNA methyltransferase TrmH, group 1 RY45_15585 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_15585 IPR029028 Alpha/beta knot methyltransferases RY45_15590 IPR010452 Isocitrate dehydrogenase kinasephosphatase RY45_15595 IPR005184 Domain of unknown function DUF306, Meta/HslJ RY45_15595 IPR038670 RY45_15595 RY45_15600 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel RY45_15605 IPR005493 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase RY45_15605 IPR010203 Regulator of ribonuclease activity A RY45_15605 IPR036704 RY45_15605 RY45_15610 IPR021710 Protein of unknown function DUF3293 RY45_15615 IPR001789 Signal transduction response regulator, receiver domain RY45_15615 IPR001867 Signal transduction response regulator, C-terminal RY45_15615 IPR011006 CheY-like superfamily RY45_15615 IPR016032 Signal transduction response regulator, C-terminal effector RY45_15615 IPR036388 RY45_15615 RY45_15630 IPR003439 ABC transporter-like RY45_15630 IPR003593 AAA+ ATPase domain RY45_15630 IPR011527 ABC transporter type 1, transmembrane domain RY45_15630 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD RY45_15630 IPR017871 ABC transporter, conserved site RY45_15630 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15630 IPR036640 RY45_15630 RY45_15635 IPR003439 ABC transporter-like RY45_15635 IPR003593 AAA+ ATPase domain RY45_15635 IPR011527 ABC transporter type 1, transmembrane domain RY45_15635 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC RY45_15635 IPR017871 ABC transporter, conserved site RY45_15635 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15635 IPR036640 RY45_15635 RY45_15640 IPR030852 RY45_15640 RY45_15645 IPR007438 Protein of unknown function DUF488 RY45_15650 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain RY45_15650 IPR036291 RY45_15650 RY45_15655 IPR023368 Uncharacterised protein family UPF0066, conserved site RY45_15655 IPR023370 TsaA-like domain RY45_15655 IPR036413 RY45_15655 RY45_15655 IPR036414 RY45_15655 RY45_15660 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal RY45_15660 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RY45_15660 IPR016039 Thiolase-like RY45_15660 IPR018201 Beta-ketoacyl synthase, active site RY45_15665 IPR008912 Uncharacterised protein family CoxE-like RY45_15670 IPR001270 ClpA/B family RY45_15670 IPR003593 AAA+ ATPase domain RY45_15670 IPR003959 ATPase, AAA-type, core RY45_15670 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15675 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site RY45_15675 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_15675 IPR005856 Cysteine synthase K/M RY45_15675 IPR005859 Cysteine synthase A RY45_15675 IPR036052 RY45_15675 RY45_15680 IPR000032 Phosphocarrier HPr protein-like RY45_15680 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RY45_15680 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RY45_15680 IPR035895 RY45_15680 RY45_15685 IPR000121 PEP-utilising enzyme, C-terminal RY45_15685 IPR006318 Phosphoenolpyruvate-utilising enzyme RY45_15685 IPR008279 PEP-utilising enzyme, mobile domain RY45_15685 IPR008731 Phosphotransferase system, enzyme I N-terminal RY45_15685 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_15685 IPR018274 PEP-utilising enzyme, active site RY45_15685 IPR023151 PEP-utilising enzyme, conserved site RY45_15685 IPR024692 Phosphotransferase system, enzyme I RY45_15685 IPR036618 RY45_15685 RY45_15685 IPR036637 RY45_15685 RY45_15690 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 RY45_15690 IPR011055 Duplicated hybrid motif RY45_15695 IPR000160 GGDEF domain RY45_15695 IPR029787 Nucleotide cyclase RY45_15695 IPR035965 RY45_15695 RY45_15705 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase RY45_15705 IPR016174 Di-haem cytochrome, transmembrane RY45_15710 IPR007607 Protein of unknown function DUF583 RY45_15715 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15715 IPR038729 RY45_15715 RY45_15725 IPR004593 Nuclease SbcCD subunit D RY45_15725 IPR004843 Calcineurin-like phosphoesterase domain, apaH type RY45_15725 IPR026843 Nuclease SbcCD subunit D, C-terminal domain RY45_15725 IPR029052 Metallo-dependent phosphatase-like RY45_15730 IPR000182 GNAT domain RY45_15730 IPR016181 Acyl-CoA N-acyltransferase RY45_15735 IPR007476 Putative exonuclease, RdgC RY45_15740 IPR000101 Gamma-glutamyltranspeptidase RY45_15740 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_15745 IPR003148 Regulator of K+ conductance, N-terminal RY45_15745 IPR006153 Cation/H+ exchanger RY45_15745 IPR036291 RY45_15745 RY45_15745 IPR038770 RY45_15745 RY45_15750 IPR007484 Peptidase M28 RY45_15750 IPR012189 Peptidase M28E, aminopeptidase AP1 RY45_15760 IPR001697 Pyruvate kinase RY45_15760 IPR011037 Pyruvate kinase-like, insert domain RY45_15760 IPR015793 Pyruvate kinase, barrel RY45_15760 IPR015795 Pyruvate kinase, C-terminal RY45_15760 IPR015806 Pyruvate kinase, beta-barrel insert domain RY45_15760 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_15760 IPR018209 Pyruvate kinase, active site RY45_15760 IPR036918 RY45_15760 RY45_15765 IPR006685 Mechanosensitive ion channel MscS RY45_15765 IPR010920 Like-Sm (LSM) domain RY45_15765 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 RY45_15765 IPR011066 Mechanosensitive ion channel MscS, C-terminal RY45_15765 IPR023408 RY45_15765 RY45_15765 IPR024393 Mechanosensitive ion channel MscS, porin domain RY45_15765 IPR025692 Mechanosensitive ion channel inner membrane domain 1 RY45_15770 IPR012349 FMN-binding split barrel RY45_15775 IPR011045 Nitrous oxide reductase, N-terminal RY45_15775 IPR015943 WD40/YVTN repeat-like-containing domain RY45_15775 IPR019405 Lactonase, 7-bladed beta propeller RY45_15780 IPR006042 Xanthine/uracil permease RY45_15780 IPR006043 Xanthine/uracil/vitamin C permease RY45_15785 IPR030934 RY45_15785 RY45_15785 IPR036844 RY45_15785 RY45_15790 IPR032635 RY45_15790 RY45_15795 IPR001891 Malic oxidoreductase RY45_15795 IPR012301 Malic enzyme, N-terminal domain RY45_15795 IPR012302 Malic enzyme, NAD-binding RY45_15795 IPR015884 Malic enzyme, conserved site RY45_15795 IPR036291 RY45_15795 RY45_15795 IPR037062 RY45_15795 RY45_15800 IPR001789 Signal transduction response regulator, receiver domain RY45_15800 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_15800 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_15800 IPR011006 CheY-like superfamily RY45_15800 IPR036890 RY45_15800 RY45_15805 IPR006471 Formate dehydrogenase, gamma subunit RY45_15805 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase RY45_15805 IPR016174 Di-haem cytochrome, transmembrane RY45_15810 IPR000813 7Fe ferredoxin RY45_15810 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_15810 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_15815 IPR006656 Molybdopterin oxidoreductase RY45_15815 IPR006657 Molydopterin dinucleotide-binding domain RY45_15815 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RY45_15815 IPR009010 Aspartate decarboxylase-like domain RY45_15815 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site RY45_15820 IPR014177 Formate dehydrogenase, TAT signal-containing RY45_15825 IPR020945 DMSO/Nitrate reductase chaperone RY45_15825 IPR036411 RY45_15825 RY45_15830 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_15830 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_15835 IPR021735 Protein of unknown function DUF3306 RY45_15840 IPR021736 Protein of unknown function DUF3305 RY45_15845 IPR003786 Protein FdhD RY45_15845 IPR016193 Cytidine deaminase-like RY45_15850 IPR010093 Excisionase/Xis, DNA-binding RY45_15850 IPR024370 PBP domain RY45_15855 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_15855 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_15855 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_15855 IPR029151 Periplasmic sensor domain-like RY45_15855 IPR033463 RY45_15855 RY45_15855 IPR036097 RY45_15855 RY45_15855 IPR036890 RY45_15855 RY45_15860 IPR001789 Signal transduction response regulator, receiver domain RY45_15860 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_15860 IPR002197 DNA binding HTH domain, Fis-type RY45_15860 IPR003593 AAA+ ATPase domain RY45_15860 IPR009057 Homeodomain-like RY45_15860 IPR011006 CheY-like superfamily RY45_15860 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_15860 IPR025944 Sigma-54 interaction domain, conserved site RY45_15860 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15865 IPR024370 PBP domain RY45_15870 IPR000515 MetI-like domain RY45_15870 IPR035906 RY45_15870 RY45_15875 IPR003439 ABC transporter-like RY45_15875 IPR003593 AAA+ ATPase domain RY45_15875 IPR017871 ABC transporter, conserved site RY45_15875 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15880 IPR013482 Molybdenum cofactor guanylyltransferase RY45_15880 IPR025877 MobA-like NTP transferase domain RY45_15880 IPR029044 Nucleotide-diphospho-sugar transferases RY45_15885 IPR001453 Molybdopterin binding domain RY45_15885 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain RY45_15885 IPR005110 MoeA, N-terminal and linker domain RY45_15885 IPR005111 MoeA, C-terminal, domain IV RY45_15885 IPR008284 Molybdenum cofactor biosynthesis, conserved site RY45_15885 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15885 IPR036135 RY45_15885 RY45_15885 IPR036425 RY45_15885 RY45_15885 IPR036688 RY45_15885 RY45_15890 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein RY45_15895 IPR003607 HD/PDEase domain RY45_15900 IPR021768 Protein of unknown function DUF3332 RY45_15905 IPR000014 PAS domain RY45_15905 IPR001610 PAC motif RY45_15905 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_15905 IPR004090 Chemotaxis methyl-accepting receptor RY45_15905 IPR013655 PAS fold-3 RY45_15905 IPR035965 RY45_15905 RY45_15910 IPR000182 GNAT domain RY45_15910 IPR016181 Acyl-CoA N-acyltransferase RY45_15915 IPR032808 RY45_15915 RY45_15920 IPR018640 Protein of unknown function DUF2063 RY45_15925 IPR007801 Uncharacterised protein family UPF0276 RY45_15925 IPR036237 RY45_15925 RY45_15930 IPR018740 Protein of unknown function DUF2282, integral membrane RY45_15935 IPR019663 Uncharacterised protein YbfA RY45_15955 IPR000014 PAS domain RY45_15955 IPR001789 Signal transduction response regulator, receiver domain RY45_15955 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_15955 IPR003660 HAMP linker domain RY45_15955 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_15955 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_15955 IPR011006 CheY-like superfamily RY45_15955 IPR035965 RY45_15955 RY45_15955 IPR036097 RY45_15955 RY45_15955 IPR036890 RY45_15955 RY45_15960 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_15960 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site RY45_15960 IPR030678 RY45_15960 RY45_15965 IPR000515 MetI-like domain RY45_15965 IPR035906 RY45_15965 RY45_15970 IPR000515 MetI-like domain RY45_15970 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RY45_15970 IPR035906 RY45_15970 RY45_15975 IPR003439 ABC transporter-like RY45_15975 IPR003593 AAA+ ATPase domain RY45_15975 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RY45_15975 IPR017871 ABC transporter, conserved site RY45_15975 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15980 IPR003439 ABC transporter-like RY45_15980 IPR003593 AAA+ ATPase domain RY45_15980 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RY45_15980 IPR017871 ABC transporter, conserved site RY45_15980 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15985 IPR001701 Glycoside hydrolase, family 9 RY45_15985 IPR004197 Glycoside hydrolase, family 9, N-terminal, Ig-like RY45_15985 IPR008928 Six-hairpin glycosidase-like RY45_15985 IPR012341 Six-hairpin glycosidase RY45_15985 IPR013783 Immunoglobulin-like fold RY45_15985 IPR014756 Immunoglobulin E-set RY45_15990 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type RY45_15995 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal RY45_15995 IPR015883 Glycoside hydrolase family 20, catalytic core RY45_15995 IPR017853 Glycoside hydrolase, superfamily RY45_15995 IPR025705 Beta-hexosaminidase RY45_15995 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like RY45_16000 IPR000014 PAS domain RY45_16000 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_16000 IPR004090 Chemotaxis methyl-accepting receptor RY45_16000 IPR013655 PAS fold-3 RY45_16000 IPR035965 RY45_16000 RY45_16005 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding RY45_16005 IPR036217 RY45_16005 RY45_16005 IPR036388 RY45_16005 RY45_16010 IPR003601 DNA topoisomerase, type IA, domain 2 RY45_16010 IPR003602 DNA topoisomerase, type IA, DNA-binding domain RY45_16010 IPR005733 DNA topoisomerase I, bacterial-type RY45_16010 IPR006171 Toprim domain RY45_16010 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type RY45_16010 IPR013497 DNA topoisomerase, type IA, central RY45_16010 IPR013498 DNA topoisomerase, type IA, zn finger RY45_16010 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RY45_16010 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RY45_16010 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RY45_16010 IPR023405 DNA topoisomerase, type IA, core domain RY45_16010 IPR023406 DNA topoisomerase, type IA, active site RY45_16010 IPR028612 DNA topoisomerase I, type IA RY45_16015 IPR007079 Succinylarginine dihydrolase RY45_16015 IPR037031 RY45_16015 RY45_16020 IPR002142 Peptidase S49 RY45_16020 IPR013703 Peptidase S49, N-terminal proteobacteria RY45_16020 IPR029045 ClpP/crotonase-like domain RY45_16025 IPR002347 Glucose/ribitol dehydrogenase RY45_16025 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_16025 IPR036291 RY45_16025 RY45_16030 IPR000847 Transcription regulator HTH, LysR RY45_16030 IPR005119 LysR, substrate-binding RY45_16030 IPR036388 RY45_16030 RY45_16030 IPR036390 RY45_16030 RY45_16035 IPR011701 Major facilitator superfamily RY45_16035 IPR036259 RY45_16035 RY45_16040 IPR004839 Aminotransferase, class I/classII RY45_16040 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_16040 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_16040 IPR015424 Pyridoxal phosphate-dependent transferase RY45_16040 IPR027619 Putative C-S lyase RY45_16045 IPR011852 TRAP transporter solute receptor, TAXI family RY45_16050 IPR000847 Transcription regulator HTH, LysR RY45_16050 IPR005119 LysR, substrate-binding RY45_16050 IPR036388 RY45_16050 RY45_16050 IPR036390 RY45_16050 RY45_16055 IPR001114 Adenylosuccinate synthetase RY45_16055 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16060 IPR005247 YbhB/YbcL RY45_16060 IPR008914 Phosphatidylethanolamine-binding protein PEBP RY45_16060 IPR036610 RY45_16060 RY45_16065 IPR009057 Homeodomain-like RY45_16065 IPR018060 DNA binding HTH domain, AraC-type RY45_16070 IPR001661 Glycoside hydrolase, family 37 RY45_16070 IPR008928 Six-hairpin glycosidase-like RY45_16070 IPR012341 Six-hairpin glycosidase RY45_16075 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_16075 IPR002305 Aminoacyl-tRNA synthetase, class Ic RY45_16075 IPR002307 Tyrosine-tRNA ligase RY45_16075 IPR002942 RNA-binding S4 domain RY45_16075 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_16075 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 RY45_16075 IPR036986 RY45_16075 RY45_16080 IPR007340 Opacity-associated protein A RY45_16080 IPR011055 Duplicated hybrid motif RY45_16080 IPR013731 Opacity-associated protein A, N-terminal RY45_16080 IPR016047 Peptidase M23 RY45_16085 IPR005338 Anhydro-N-acetylmuramic acid kinase RY45_16090 IPR002818 ThiJ/PfpI RY45_16090 IPR017283 Molecular chaperone Hsp31 and glyoxalase 3 RY45_16090 IPR029062 Class I glutamine amidotransferase-like RY45_16095 IPR006056 Enamine/imine deaminase YjgF-like RY45_16095 IPR006175 YjgF/Yer057p/UK114 family RY45_16095 IPR035959 RY45_16095 RY45_16105 IPR005474 Transketolase, N-terminal RY45_16105 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_16105 IPR005478 Transketolase, bacterial-like RY45_16105 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II RY45_16105 IPR020826 Transketolase binding site RY45_16105 IPR029061 Thiamin diphosphate-binding fold RY45_16105 IPR033248 RY45_16105 RY45_16110 IPR002133 S-adenosylmethionine synthetase RY45_16110 IPR022628 S-adenosylmethionine synthetase, N-terminal RY45_16110 IPR022629 S-adenosylmethionine synthetase, central domain RY45_16110 IPR022630 S-adenosylmethionine synthetase, C-terminal RY45_16110 IPR022631 S-adenosylmethionine synthetase, conserved site RY45_16110 IPR022636 S-adenosylmethionine synthetase superfamily RY45_16115 IPR006640 Domain of unknown function SprT-like RY45_16115 IPR023483 Uncharacterised protein family SprT RY45_16115 IPR035240 RY45_16115 RY45_16120 IPR007346 Endonuclease I RY45_16125 IPR006700 Ribosomal RNA small subunit methyltransferase E RY45_16125 IPR015947 PUA-like domain RY45_16125 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_16125 IPR029028 Alpha/beta knot methyltransferases RY45_16130 IPR004215 Prokaryotic glutathione synthetase, N-terminal RY45_16130 IPR004218 Prokaryotic glutathione synthetase, ATP-binding RY45_16130 IPR006284 Glutathione synthetase, prokaryotic RY45_16130 IPR013815 ATP-grasp fold, subdomain 1 RY45_16130 IPR016185 Pre-ATP-grasp domain RY45_16135 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_16135 IPR004090 Chemotaxis methyl-accepting receptor RY45_16135 IPR024478 4HB MCP domain RY45_16140 IPR003774 Protein of unknown function UPF0301 RY45_16145 IPR005227 Resolvase, holliday junction-type, YqgF-like RY45_16145 IPR006641 YqgF/RNase H-like domain RY45_16145 IPR012337 Ribonuclease H-like domain RY45_16145 IPR037027 RY45_16145 RY45_16150 IPR000109 Proton-dependent oligopeptide transporter family RY45_16150 IPR005279 Amino acid/peptide transporter family RY45_16150 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site RY45_16150 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B RY45_16150 IPR036259 RY45_16150 RY45_16155 IPR000847 Transcription regulator HTH, LysR RY45_16155 IPR005119 LysR, substrate-binding RY45_16155 IPR036388 RY45_16155 RY45_16155 IPR036390 RY45_16155 RY45_16165 IPR010438 Bor RY45_16170 IPR001466 Beta-lactamase-related RY45_16170 IPR001586 Beta-lactamase, class-C active site RY45_16170 IPR012338 Beta-lactamase/transpeptidase-like RY45_16175 IPR011703 ATPase, AAA-3 RY45_16175 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16180 IPR002881 Domain of unknown function DUF58 RY45_16185 IPR002931 Transglutaminase-like RY45_16185 IPR021878 Protein of unknown function DUF3488 RY45_16185 IPR038765 RY45_16185 RY45_16190 IPR001463 Sodium:alanine symporter RY45_16195 IPR001585 Transaldolase RY45_16195 IPR004730 Transaldolase type 1 RY45_16195 IPR013785 Aldolase-type TIM barrel RY45_16195 IPR018225 Transaldolase, active site RY45_16200 IPR021932 Protein of unknown function DUF3545 RY45_16205 IPR012312 Haemerythrin/HHE cation-binding motif RY45_16210 IPR002043 Uracil-DNA glycosylase RY45_16210 IPR005122 Uracil-DNA glycosylase-like RY45_16210 IPR018085 Uracil-DNA glycosylase, active site RY45_16210 IPR036895 RY45_16210 RY45_16215 IPR001150 Glycine radical domain RY45_16215 IPR011140 Autonomous glycyl radical cofactor GrcA RY45_16215 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RY45_16220 IPR001991 Sodium:dicarboxylate symporter RY45_16220 IPR018107 Sodium:dicarboxylate symporter, conserved site RY45_16220 IPR023954 C4-dicarboxylate transport protein RY45_16220 IPR036458 RY45_16220 RY45_16225 IPR006218 DAHP synthetase I/KDSA RY45_16225 IPR006269 3-deoxy-8-phosphooctulonate synthase RY45_16225 IPR013785 Aldolase-type TIM barrel RY45_16230 IPR011990 Tetratricopeptide-like helical domain RY45_16230 IPR032698 RY45_16230 RY45_16235 IPR007360 Invasion gene expression up-regulator, SirB RY45_16240 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_16240 IPR004556 Modification methylase HemK RY45_16240 IPR007848 Methyltransferase small domain RY45_16240 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific RY45_16240 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_16245 IPR000352 Peptide chain release factor class I/class II RY45_16245 IPR004373 Peptide chain release factor 1 RY45_16245 IPR005139 Peptide chain release factor RY45_16250 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase RY45_16250 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RY45_16250 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal RY45_16250 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain RY45_16250 IPR018214 Glutamyl-tRNA reductase, conserved site RY45_16250 IPR036291 RY45_16250 RY45_16250 IPR036343 RY45_16250 RY45_16250 IPR036453 RY45_16250 RY45_16255 IPR004565 Outer membrane lipoprotein LolB RY45_16255 IPR029046 Lipoprotein localisation LolA/LolB/LppX RY45_16270 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site RY45_16270 IPR005946 Ribose-phosphate diphosphokinase RY45_16270 IPR029057 Phosphoribosyltransferase-like RY45_16270 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain RY45_16270 IPR037515 RY45_16270 RY45_16275 IPR004843 Calcineurin-like phosphoesterase domain, apaH type RY45_16275 IPR006179 5'-Nucleotidase/apyrase RY45_16275 IPR008334 5'-Nucleotidase, C-terminal RY45_16275 IPR029052 Metallo-dependent phosphatase-like RY45_16275 IPR036907 RY45_16275 RY45_16280 IPR001328 Peptidyl-tRNA hydrolase RY45_16280 IPR018171 Peptidyl-tRNA hydrolase, conserved site RY45_16280 IPR036416 RY45_16280 RY45_16285 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 RY45_16285 IPR006073 GTP binding domain RY45_16285 IPR012675 Beta-grasp domain RY45_16285 IPR012676 TGS-like RY45_16285 IPR013029 Domain of unknown function DUF933 RY45_16285 IPR023192 TGS-like domain RY45_16285 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16330 IPR004680 Citrate transporter-like domain RY45_16330 IPR006037 Regulator of K+ conductance, C-terminal RY45_16330 IPR031312 RY45_16330 RY45_16330 IPR036721 RY45_16330 RY45_16335 IPR006419 Nicotinamide mononucleotide transporter PnuC RY45_16340 IPR000845 Nucleoside phosphorylase domain RY45_16340 IPR035994 RY45_16340 RY45_16345 IPR000595 Cyclic nucleotide-binding domain RY45_16345 IPR014710 RmlC-like jelly roll fold RY45_16345 IPR018490 Cyclic nucleotide-binding-like RY45_16350 IPR007374 ASCH domain RY45_16350 IPR008314 Uncharacterised conserved protein UCP029143 RY45_16350 IPR015947 PUA-like domain RY45_16355 IPR012427 Protein of unknown function DUF1622 RY45_16360 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_16360 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_16360 IPR017853 Glycoside hydrolase, superfamily RY45_16360 IPR022567 Domain of unknown function DUF3459 RY45_16370 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain RY45_16370 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal RY45_16370 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II RY45_16370 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RY45_16370 IPR011895 Pyruvate-flavodoxin oxidoreductase RY45_16370 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_16370 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_16370 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain RY45_16370 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain RY45_16370 IPR029061 Thiamin diphosphate-binding fold RY45_16370 IPR033412 RY45_16370 RY45_16370 IPR037112 RY45_16370 RY45_16375 IPR011701 Major facilitator superfamily RY45_16375 IPR036259 RY45_16375 RY45_16380 IPR006439 HAD hydrolase, subfamily IA RY45_16380 IPR010976 Beta-phosphoglucomutase hydrolase RY45_16380 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_16380 IPR023214 HAD-like domain RY45_16380 IPR036412 RY45_16380 RY45_16385 IPR024445 Transposase, ISXO2-like RY45_16390 IPR009770 Domain of unknown function DUF1338 RY45_16395 IPR015590 Aldehyde dehydrogenase domain RY45_16395 IPR016160 Aldehyde dehydrogenase, cysteine active site RY45_16395 IPR016161 Aldehyde/histidinol dehydrogenase RY45_16395 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_16395 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_16395 IPR017649 Succinylglutamic semialdehyde dehydrogenase RY45_16395 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RY45_16400 IPR007041 Arginine N-succinyltransferase Ast/AOST RY45_16400 IPR016181 Acyl-CoA N-acyltransferase RY45_16400 IPR017650 Arginine N-succinyltransferase AstA RY45_16405 IPR004636 Acetylornithine/Succinylornithine transaminase family RY45_16405 IPR005814 Aminotransferase class-III RY45_16405 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_16405 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_16405 IPR015424 Pyridoxal phosphate-dependent transferase RY45_16405 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria RY45_16410 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain RY45_16410 IPR017926 Glutamine amidotransferase RY45_16410 IPR029062 Class I glutamine amidotransferase-like RY45_16420 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_16420 IPR002305 Aminoacyl-tRNA synthetase, class Ic RY45_16420 IPR002306 Tryptophan-tRNA ligase RY45_16420 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_16420 IPR024109 Tryptophan-tRNA ligase, bacterial-type RY45_16425 IPR006346 2-phosphoglycolate phosphatase, prokaryotic RY45_16425 IPR006439 HAD hydrolase, subfamily IA RY45_16425 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_16425 IPR023214 HAD-like domain RY45_16425 IPR036412 RY45_16425 RY45_16425 IPR037512 RY45_16425 RY45_16430 IPR000056 Ribulose-phosphate 3-epimerase-like RY45_16430 IPR011060 Ribulose-phosphate binding barrel RY45_16430 IPR013785 Aldolase-type TIM barrel RY45_16430 IPR026019 Ribulose-phosphate 3-epimerase RY45_16435 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_16435 IPR012263 Adenine modification methylase, M.EcoRV-type RY45_16435 IPR012327 D12 class N6 adenine-specific DNA methyltransferase RY45_16435 IPR023095 Adenine-specific methyltransferase, domain 2 RY45_16435 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_16440 IPR007730 Sporulation-related domain RY45_16440 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16440 IPR036680 RY45_16440 RY45_16445 IPR016037 3-dehydroquinate synthase AroB RY45_16445 IPR030960 RY45_16445 RY45_16445 IPR030963 RY45_16445 RY45_16450 IPR000623 Shikimate kinase/Threonine synthase-like 1 RY45_16450 IPR023000 Shikimate kinase, conserved site RY45_16450 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16450 IPR031322 RY45_16450 RY45_16455 IPR001775 GspD/PilQ family RY45_16455 IPR004846 Type II/III secretion system RY45_16455 IPR005644 NolW-like RY45_16455 IPR011662 Secretin/TonB, short N-terminal RY45_16455 IPR013355 Type IV pilus secretin PilQ RY45_16455 IPR038591 RY45_16455 RY45_16460 IPR007446 Pilus assembly protein PilP RY45_16465 IPR007445 Pilus assembly protein, PilO RY45_16465 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RY45_16470 IPR007813 Fimbrial assembly PilN RY45_16475 IPR003494 SHS2 domain inserted in FtsA RY45_16475 IPR005883 Type IV pilus assembly protein PilM RY45_16480 IPR001264 Glycosyl transferase, family 51 RY45_16480 IPR001460 Penicillin-binding protein, transpeptidase RY45_16480 IPR012338 Beta-lactamase/transpeptidase-like RY45_16480 IPR023346 Lysozyme-like domain RY45_16480 IPR031376 RY45_16480 RY45_16480 IPR036950 RY45_16480 RY45_16485 IPR000847 Transcription regulator HTH, LysR RY45_16485 IPR005119 LysR, substrate-binding RY45_16485 IPR036388 RY45_16485 RY45_16485 IPR036390 RY45_16485 RY45_16490 IPR003660 HAMP linker domain RY45_16490 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_16490 IPR024478 4HB MCP domain RY45_16495 IPR036249 RY45_16495 RY45_16500 IPR001279 Beta-lactamase-like RY45_16500 IPR036866 RY45_16500 RY45_16505 IPR000847 Transcription regulator HTH, LysR RY45_16505 IPR005119 LysR, substrate-binding RY45_16505 IPR036388 RY45_16505 RY45_16505 IPR036390 RY45_16505 RY45_16520 IPR011055 Duplicated hybrid motif RY45_16520 IPR016047 Peptidase M23 RY45_16525 IPR002528 Multi antimicrobial extrusion protein RY45_16530 IPR006685 Mechanosensitive ion channel MscS RY45_16530 IPR006686 Mechanosensitive ion channel MscS, conserved site RY45_16530 IPR010920 Like-Sm (LSM) domain RY45_16530 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 RY45_16530 IPR011066 Mechanosensitive ion channel MscS, C-terminal RY45_16530 IPR023408 RY45_16530 RY45_16530 IPR024393 Mechanosensitive ion channel MscS, porin domain RY45_16530 IPR025692 Mechanosensitive ion channel inner membrane domain 1 RY45_16535 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain RY45_16535 IPR030395 RY45_16535 RY45_16540 IPR003660 HAMP linker domain RY45_16540 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_16540 IPR029151 Periplasmic sensor domain-like RY45_16540 IPR033479 RY45_16540 RY45_16545 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site RY45_16545 IPR003953 FAD binding domain RY45_16545 IPR005884 Fumarate reductase, flavoprotein subunit RY45_16545 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit RY45_16545 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal RY45_16545 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RY45_16545 IPR036188 RY45_16545 RY45_16545 IPR037099 RY45_16545 RY45_16550 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein RY45_16550 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RY45_16550 IPR009051 Alpha-helical ferredoxin RY45_16550 IPR012675 Beta-grasp domain RY45_16550 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_16550 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_16550 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal RY45_16550 IPR036010 RY45_16550 RY45_16555 IPR003510 Fumarate reductase, subunit C RY45_16555 IPR034804 RY45_16555 RY45_16560 IPR003418 Fumarate reductase, D subunit RY45_16560 IPR034804 RY45_16560 RY45_16570 IPR001647 DNA-binding HTH domain, TetR-type RY45_16570 IPR009057 Homeodomain-like RY45_16570 IPR036271 RY45_16570 RY45_16580 IPR009351 Protein of unknown function DUF1006 RY45_16585 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_16590 IPR016181 Acyl-CoA N-acyltransferase RY45_16590 IPR022050 Thermostable hemolysin RY45_16595 IPR000873 AMP-dependent synthetase/ligase RY45_16595 IPR020845 AMP-binding, conserved site RY45_16600 IPR016084 Haem oxygenase-like, multi-helical RY45_16605 IPR002347 Glucose/ribitol dehydrogenase RY45_16605 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_16605 IPR036291 RY45_16605 RY45_16610 IPR011990 Tetratricopeptide-like helical domain RY45_16610 IPR019734 Tetratricopeptide repeat RY45_16615 IPR001789 Signal transduction response regulator, receiver domain RY45_16615 IPR001867 Signal transduction response regulator, C-terminal RY45_16615 IPR011006 CheY-like superfamily RY45_16615 IPR036388 RY45_16615 RY45_16620 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_16620 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_16620 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_16620 IPR013727 Two-component sensor kinase N-terminal RY45_16620 IPR036097 RY45_16620 RY45_16620 IPR036890 RY45_16620 RY45_16625 IPR021109 Aspartic peptidase domain RY45_16630 IPR001093 IMP dehydrogenase/GMP reductase RY45_16630 IPR005993 Guanosine monophosphate reductase 1 RY45_16630 IPR013785 Aldolase-type TIM barrel RY45_16630 IPR015875 IMP dehydrogenase / GMP reductase, conserved site RY45_16635 IPR016633 Uncharacterised conserved protein UCP015557 RY45_16640 IPR001059 Translation elongation factor P/YeiP, central RY45_16640 IPR008991 Translation protein SH3-like domain RY45_16640 IPR011768 Translation elongation factor P RY45_16640 IPR012340 Nucleic acid-binding, OB-fold RY45_16640 IPR013185 Translation elongation factor, KOW-like RY45_16640 IPR014722 Ribosomal protein L2 domain 2 RY45_16640 IPR015365 Elongation factor P, C-terminal RY45_16640 IPR020599 Translation elongation factor P/YeiP RY45_16645 IPR014509 Uncharacterised conserved protein UCP020606 RY45_16650 IPR022529 Protein of unknown function DUF3530 RY45_16655 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_16655 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RY45_16655 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_16655 IPR036291 RY45_16655 RY45_16660 IPR039567 RY45_16660 RY45_16665 IPR000160 GGDEF domain RY45_16665 IPR029787 Nucleotide cyclase RY45_16670 IPR000415 Nitroreductase-like RY45_16670 IPR029479 Nitroreductase RY45_16675 IPR006439 HAD hydrolase, subfamily IA RY45_16675 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_16675 IPR023214 HAD-like domain RY45_16675 IPR036412 RY45_16675 RY45_16685 IPR000847 Transcription regulator HTH, LysR RY45_16685 IPR005119 LysR, substrate-binding RY45_16685 IPR036388 RY45_16685 RY45_16685 IPR036390 RY45_16685 RY45_16690 IPR000160 GGDEF domain RY45_16690 IPR013656 PAS fold-4 RY45_16690 IPR029787 Nucleotide cyclase RY45_16690 IPR035965 RY45_16690 RY45_16695 IPR002059 Cold-shock protein, DNA-binding RY45_16695 IPR008613 Excalibur calcium-binding domain RY45_16695 IPR011129 Cold shock protein RY45_16695 IPR012340 Nucleic acid-binding, OB-fold RY45_16700 IPR000868 Isochorismatase-like RY45_16700 IPR036380 RY45_16700 RY45_16705 IPR002938 Monooxygenase, FAD-binding RY45_16705 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 RY45_16705 IPR036188 RY45_16705 RY45_16710 IPR002792 TRAM domain RY45_16710 IPR005839 Methylthiotransferase RY45_16710 IPR006463 tRNA-i(6)A37 modification enzyme MiaB RY45_16710 IPR006638 Elongator protein 3/MiaB/NifB RY45_16710 IPR007197 Radical SAM RY45_16710 IPR013848 Methylthiotransferase, N-terminal RY45_16710 IPR020612 Methylthiotransferase, conserved site RY45_16710 IPR023404 Radical SAM, alpha/beta horseshoe RY45_16710 IPR038135 RY45_16710 RY45_16715 IPR003714 PhoH-like protein RY45_16715 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16720 IPR002036 Endoribonuclease YbeY RY45_16720 IPR020549 Endoribonuclease YbeY, conserved site RY45_16720 IPR023091 Metalloprotease catalytic domain, predicted RY45_16725 IPR000644 CBS domain RY45_16725 IPR005170 Transporter-associated domain RY45_16725 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_16725 IPR036318 RY45_16725 RY45_16730 IPR003010 Carbon-nitrogen hydrolase RY45_16730 IPR004563 Apolipoprotein N-acyltransferase RY45_16730 IPR036526 RY45_16730 RY45_16735 IPR009912 Protein of unknown function DUF1451 RY45_16740 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_16740 IPR002300 Aminoacyl-tRNA synthetase, class Ia RY45_16740 IPR002302 Leucine-tRNA ligase RY45_16740 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RY45_16740 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RY45_16740 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RY45_16740 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_16740 IPR025709 Leucyl-tRNA synthetase, editing domain RY45_16745 IPR007485 Lipopolysaccharide assembly, LptE RY45_16755 IPR005790 DNA polymerase III, delta subunit RY45_16755 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RY45_16755 IPR010372 DNA polymerase III, delta RY45_16755 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16755 IPR032780 RY45_16755 RY45_16760 IPR004821 Cytidyltransferase-like domain RY45_16760 IPR005248 Probable nicotinate-nucleotide adenylyltransferase RY45_16760 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_16765 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RY45_16770 IPR003742 SPOUT methyltransferase, predicted RY45_16770 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_16770 IPR029028 Alpha/beta knot methyltransferases RY45_16775 IPR001460 Penicillin-binding protein, transpeptidase RY45_16775 IPR005311 Penicillin-binding protein, dimerisation domain RY45_16775 IPR012338 Beta-lactamase/transpeptidase-like RY45_16775 IPR017790 Penicillin-binding protein 2 RY45_16775 IPR036138 RY45_16775 RY45_16780 IPR001182 Cell cycle protein FtsW/RodA RY45_16780 IPR011923 Rod shape-determining protein RodA RY45_16780 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site RY45_16785 IPR011757 Lytic transglycosylase MltB RY45_16785 IPR023346 Lysozyme-like domain RY45_16785 IPR031304 RY45_16785 RY45_16790 IPR007730 Sporulation-related domain RY45_16790 IPR009009 RlpA-like double-psi beta-barrel domain RY45_16790 IPR012997 Rare lipoprotein A, bacterial RY45_16790 IPR034718 RY45_16790 RY45_16790 IPR036680 RY45_16790 RY45_16790 IPR036908 RY45_16790 RY45_16795 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal RY45_16795 IPR012338 Beta-lactamase/transpeptidase-like RY45_16795 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal RY45_16795 IPR015956 Penicillin-binding protein-associated RY45_16795 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A RY45_16795 IPR037167 RY45_16795 RY45_16800 IPR007454 Uncharacterised protein family UPF0250 RY45_16800 IPR027471 YbeD-like domain RY45_16805 IPR000544 Octanoyltransferase RY45_16805 IPR004143 Biotin/lipoate A/B protein ligase RY45_16805 IPR020605 Octanoyltransferase, conserved site RY45_16810 IPR003698 Lipoyl synthase RY45_16810 IPR006638 Elongator protein 3/MiaB/NifB RY45_16810 IPR007197 Radical SAM RY45_16810 IPR013785 Aldolase-type TIM barrel RY45_16810 IPR031691 RY45_16810 RY45_16830 IPR003593 AAA+ ATPase domain RY45_16830 IPR008868 Bacterial TniB RY45_16830 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16835 IPR001584 Integrase, catalytic core RY45_16835 IPR012337 Ribonuclease H-like domain RY45_16835 IPR015378 Transposase-like, Mu, C-terminal RY45_16835 IPR036397 RY45_16835 RY45_16840 IPR014832 TnsA endonuclease C-terminal RY45_16840 IPR014833 TnsA endonuclease, N-terminal RY45_16845 IPR000182 GNAT domain RY45_16845 IPR016181 Acyl-CoA N-acyltransferase RY45_16850 IPR010662 Putative hydrolase RBBP9/YdeN RY45_16850 IPR029058 Alpha/Beta hydrolase fold RY45_16855 IPR003667 Electron transport complex, Rnf/Nqr RY45_16855 IPR010967 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit RY45_16865 IPR000182 GNAT domain RY45_16865 IPR016181 Acyl-CoA N-acyltransferase RY45_16870 IPR000551 MerR-type HTH domain RY45_16870 IPR009061 DNA binding domain, putative RY45_16870 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_16875 IPR001667 DDH domain RY45_16875 IPR003156 DHHA1 domain RY45_16875 IPR004610 Bacterial RecJ exonuclease RY45_16875 IPR038763 RY45_16875 RY45_16880 IPR009094 Disulphide bond isomerase, DsbC, N-terminal RY45_16880 IPR012336 Thioredoxin-like fold RY45_16880 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal RY45_16880 IPR036249 RY45_16880 RY45_16885 IPR001185 Large-conductance mechanosensitive channel RY45_16885 IPR019823 Large-conductance mechanosensitive channel, conserved site RY45_16885 IPR036019 RY45_16885 RY45_16885 IPR037673 RY45_16885 RY45_16890 IPR002104 Integrase, catalytic RY45_16890 IPR004107 Integrase, SAM-like, N-terminal RY45_16890 IPR010998 Integrase, Lambda-type, N-terminal RY45_16890 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_16890 IPR011932 Tyrosine recombinase XerD RY45_16890 IPR013762 Integrase-like, catalytic core RY45_16890 IPR023009 Tyrosine recombinase XerC/XerD RY45_16895 IPR001226 Flavodoxin, conserved site RY45_16895 IPR008254 Flavodoxin/nitric oxide synthase RY45_16895 IPR010086 Flavodoxin, long chain RY45_16895 IPR029039 Flavoprotein-like RY45_16900 IPR002510 TldD/PmbA RY45_16900 IPR035068 RY45_16900 RY45_16900 IPR036059 RY45_16900 RY45_16905 IPR002510 TldD/PmbA RY45_16905 IPR035068 RY45_16905 RY45_16905 IPR036059 RY45_16905 RY45_16910 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_16915 IPR005490 L,D-transpeptidase catalytic domain RY45_16915 IPR018392 LysM domain RY45_16915 IPR038063 RY45_16915 RY45_16920 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase RY45_16925 IPR003819 Taurine catabolism dioxygenase TauD/TfdA RY45_16930 IPR007817 Pyoverdine biosynthesis RY45_16930 IPR017133 Pyoverdine chromophore biosynthesis protein PvcA RY45_16935 IPR002641 Patatin/Phospholipase A2-related RY45_16935 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_16940 IPR005135 Endonuclease/exonuclease/phosphatase RY45_16940 IPR036691 RY45_16940 RY45_16945 IPR006656 Molybdopterin oxidoreductase RY45_16945 IPR006657 Molydopterin dinucleotide-binding domain RY45_16945 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RY45_16945 IPR009010 Aspartate decarboxylase-like domain RY45_16950 IPR005614 NrfD family RY45_16955 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_16955 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_16960 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_16960 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_16960 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_16960 IPR036097 RY45_16960 RY45_16960 IPR036890 RY45_16960 RY45_16965 IPR000792 Transcription regulator LuxR, C-terminal RY45_16965 IPR001789 Signal transduction response regulator, receiver domain RY45_16965 IPR011006 CheY-like superfamily RY45_16965 IPR016032 Signal transduction response regulator, C-terminal effector RY45_16965 IPR036388 RY45_16965 RY45_16970 IPR003018 GAF domain RY45_16970 IPR010559 Signal transduction histidine kinase, internal region RY45_16970 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region RY45_16970 IPR036890 RY45_16970 RY45_16975 IPR001789 Signal transduction response regulator, receiver domain RY45_16975 IPR007492 LytTR DNA-binding domain RY45_16975 IPR011006 CheY-like superfamily RY45_16980 IPR003706 Carbon starvation protein CstA RY45_16980 IPR025299 CstA C-terminal domain RY45_16985 IPR005320 Peptidase S51 RY45_16985 IPR029062 Class I glutamine amidotransferase-like RY45_16990 IPR000362 Fumarate lyase family RY45_16990 IPR005677 Fumarate hydratase, class II RY45_16990 IPR008948 L-Aspartase-like RY45_16990 IPR018951 Fumarase C, C-terminal RY45_16990 IPR020557 Fumarate lyase, conserved site RY45_16990 IPR022761 Fumarate lyase, N-terminal RY45_16990 IPR024083 Fumarase/histidase, N-terminal RY45_16995 IPR009468 Protein of unknown function DUF1090 RY45_17000 IPR003787 Sulphur relay, DsrE/F-like protein RY45_17000 IPR027396 DsrEFH-like RY45_17005 IPR000160 GGDEF domain RY45_17005 IPR009050 Globin-like RY45_17005 IPR012292 Globin, structural domain RY45_17005 IPR029787 Nucleotide cyclase RY45_17010 IPR005829 Sugar transporter, conserved site RY45_17010 IPR011701 Major facilitator superfamily RY45_17010 IPR036259 RY45_17010 RY45_17015 IPR001247 Exoribonuclease, phosphorolytic domain 1 RY45_17015 IPR003029 Ribosomal protein S1, RNA-binding domain RY45_17015 IPR004087 K Homology domain RY45_17015 IPR004088 K Homology domain, type 1 RY45_17015 IPR012162 Polyribonucleotide nucleotidyltransferase RY45_17015 IPR012340 Nucleic acid-binding, OB-fold RY45_17015 IPR015847 Exoribonuclease, phosphorolytic domain 2 RY45_17015 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain RY45_17015 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_17015 IPR022967 RNA-binding domain, S1 RY45_17015 IPR027408 PNPase/RNase PH domain RY45_17015 IPR036345 RY45_17015 RY45_17015 IPR036456 RY45_17015 RY45_17015 IPR036612 RY45_17015 RY45_17020 IPR000589 Ribosomal protein S15 RY45_17020 IPR005290 Ribosomal protein S15, bacterial-type RY45_17020 IPR009068 S15/NS1, RNA-binding RY45_17025 IPR002501 Pseudouridine synthase II RY45_17025 IPR014780 tRNA pseudouridine synthase II, TruB RY45_17025 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal RY45_17025 IPR015947 PUA-like domain RY45_17025 IPR020103 Pseudouridine synthase, catalytic domain RY45_17025 IPR032819 RY45_17025 RY45_17025 IPR036974 RY45_17025 RY45_17030 IPR000238 Ribosome-binding factor A RY45_17030 IPR015946 K homology domain-like, alpha/beta RY45_17030 IPR020053 Ribosome-binding factor A, conserved site RY45_17030 IPR023799 Ribosome-binding factor A domain RY45_17035 IPR000178 Translation initiation factor aIF-2, bacterial-like RY45_17035 IPR000795 Elongation factor, GTP-binding domain RY45_17035 IPR005225 Small GTP-binding protein domain RY45_17035 IPR006847 Translation initiation factor IF-2, N-terminal RY45_17035 IPR009000 Translation protein, beta-barrel domain RY45_17035 IPR009061 DNA binding domain, putative RY45_17035 IPR013575 Initiation factor 2 associated domain, bacterial RY45_17035 IPR023115 Translation initiation factor IF- 2, domain 3 RY45_17035 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17035 IPR036925 RY45_17035 RY45_17040 IPR009019 K homology domain, prokaryotic type RY45_17040 IPR010213 Transcription termination factor NusA RY45_17040 IPR010214 Transcription termination factor NusA, C-terminal duplication RY45_17040 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical RY45_17040 IPR012340 Nucleic acid-binding, OB-fold RY45_17040 IPR013735 Transcription factor NusA, N-terminal RY45_17040 IPR015946 K homology domain-like, alpha/beta RY45_17040 IPR022967 RNA-binding domain, S1 RY45_17040 IPR025249 KH domain, NusA-like RY45_17040 IPR030842 RY45_17040 RY45_17040 IPR036555 RY45_17040 RY45_17045 IPR003728 Ribosome maturation factor RimP RY45_17045 IPR028989 Ribosome maturation factor RimP, N-terminal RY45_17045 IPR028998 Ribosome maturation factor RimP, C-terminal RY45_17045 IPR035956 RY45_17045 RY45_17045 IPR036847 RY45_17045 RY45_17060 IPR004692 Preprotein translocase SecG subunit RY45_17065 IPR000652 Triosephosphate isomerase RY45_17065 IPR013785 Aldolase-type TIM barrel RY45_17065 IPR020861 Triosephosphate isomerase, active site RY45_17065 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic RY45_17065 IPR035990 RY45_17065 RY45_17070 IPR005841 Alpha-D-phosphohexomutase superfamily RY45_17070 IPR005843 Alpha-D-phosphohexomutase, C-terminal RY45_17070 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I RY45_17070 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II RY45_17070 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III RY45_17070 IPR006352 Phosphoglucosamine mutase RY45_17070 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III RY45_17070 IPR016066 Alpha-D-phosphohexomutase, conserved site RY45_17070 IPR036900 RY45_17070 RY45_17075 IPR000489 Pterin-binding RY45_17075 IPR006390 Dihydropteroate synthase RY45_17075 IPR011005 Dihydropteroate synthase-like RY45_17080 IPR000642 Peptidase M41 RY45_17080 IPR003593 AAA+ ATPase domain RY45_17080 IPR003959 ATPase, AAA-type, core RY45_17080 IPR003960 ATPase, AAA-type, conserved site RY45_17080 IPR005936 Peptidase, FtsH RY45_17080 IPR011546 Peptidase M41, FtsH extracellular RY45_17080 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17080 IPR037219 RY45_17080 RY45_17085 IPR002877 Ribosomal RNA methyltransferase FtsJ domain RY45_17085 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria RY45_17085 IPR015507 Ribosomal RNA large subunit methyltransferase E RY45_17085 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_17090 IPR001890 RNA-binding, CRM domain RY45_17090 IPR017924 RNA-binding protein YhbY RY45_17090 IPR035920 RY45_17090 RY45_17100 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal RY45_17100 IPR006359 Transcription elongation factor GreA RY45_17100 IPR018151 Transcription elongation factor, GreA/GreB, conserved site RY45_17100 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal RY45_17100 IPR023459 Transcription elongation factor GreA/GreB family RY45_17100 IPR028624 Transcription elongation factor GreA/GreB RY45_17100 IPR036805 RY45_17100 RY45_17100 IPR036953 RY45_17100 RY45_17105 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_17105 IPR025713 Motility protein B, N-terminal domain RY45_17105 IPR036737 RY45_17105 RY45_17110 IPR000540 Flagellar motor protein MotA, conserved site RY45_17110 IPR002898 MotA/TolQ/ExbB proton channel RY45_17115 IPR003761 Exonuclease VII, small subunit RY45_17115 IPR037004 RY45_17115 RY45_17120 IPR000092 Polyprenyl synthetase RY45_17120 IPR008949 Terpenoid synthase RY45_17120 IPR033749 RY45_17120 RY45_17125 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_17125 IPR005477 Deoxyxylulose-5-phosphate synthase RY45_17125 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II RY45_17125 IPR020826 Transketolase binding site RY45_17125 IPR029061 Thiamin diphosphate-binding fold RY45_17125 IPR033248 RY45_17125 RY45_17130 IPR000515 MetI-like domain RY45_17130 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RY45_17130 IPR035906 RY45_17130 RY45_17135 IPR000515 MetI-like domain RY45_17135 IPR035906 RY45_17135 RY45_17140 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_17140 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site RY45_17140 IPR030678 RY45_17140 RY45_17145 IPR003439 ABC transporter-like RY45_17145 IPR003593 AAA+ ATPase domain RY45_17145 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RY45_17145 IPR017871 ABC transporter, conserved site RY45_17145 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17150 IPR007686 YutG/PgpA domain RY45_17150 IPR026037 Phosphatidylglycerophosphatase A RY45_17150 IPR036681 RY45_17150 RY45_17155 IPR006283 Thiamine-monophosphate kinase RY45_17155 IPR010918 AIR synthase-related protein, C-terminal domain RY45_17155 IPR016188 PurM, N-terminal-like RY45_17155 IPR036676 RY45_17155 RY45_17155 IPR036921 RY45_17155 RY45_17160 IPR006027 NusB/RsmB/TIM44 RY45_17160 IPR011605 NusB antitermination factor RY45_17160 IPR035926 RY45_17160 RY45_17165 IPR002180 6,7-dimethyl-8-ribityllumazine synthase RY45_17165 IPR034964 RY45_17165 RY45_17165 IPR036467 RY45_17165 RY45_17170 IPR001254 Peptidase S1 RY45_17170 IPR001314 Peptidase S1A, chymotrypsin-type RY45_17170 IPR009003 Trypsin-like cysteine/serine peptidase domain RY45_17170 IPR017756 Transmembrane Gly-Cys-Arg, conserved site RY45_17170 IPR018114 Peptidase S1, trypsin family, active site RY45_17170 IPR020008 GlyGly-CTERM domain RY45_17170 IPR033116 RY45_17170 RY45_17175 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB RY45_17175 IPR017945 DHBP synthase RibB-like alpha/beta domain RY45_17175 IPR032677 RY45_17175 RY45_17175 IPR036144 RY45_17175 RY45_17180 IPR001783 Lumazine-binding protein RY45_17180 IPR017938 Riboflavin synthase-like beta-barrel RY45_17180 IPR023366 ATP synthase subunit alpha-like domain RY45_17180 IPR026017 Lumazine-binding domain RY45_17185 IPR002125 CMP/dCMP deaminase, zinc-binding RY45_17185 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal RY45_17185 IPR004794 Riboflavin biosynthesis protein RibD RY45_17185 IPR011549 Riboflavin-specific deaminase, C-terminal RY45_17185 IPR016192 APOBEC/CMP deaminase, zinc-binding RY45_17185 IPR016193 Cytidine deaminase-like RY45_17185 IPR024072 Dihydrofolate reductase-like domain RY45_17190 IPR003796 Ribonucleotide reductase regulator NrdR-like RY45_17190 IPR005144 ATP-cone RY45_17200 IPR001085 Serine hydroxymethyltransferase RY45_17200 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_17200 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_17200 IPR015424 Pyridoxal phosphate-dependent transferase RY45_17200 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site RY45_17200 IPR039429 RY45_17200 RY45_17210 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V RY45_17210 IPR011057 Mss4-like RY45_17215 IPR020945 DMSO/Nitrate reductase chaperone RY45_17215 IPR023069 Chaperone TorD RY45_17215 IPR036386 RY45_17215 RY45_17215 IPR036411 RY45_17215 RY45_17235 IPR000014 PAS domain RY45_17235 IPR000160 GGDEF domain RY45_17235 IPR001610 PAC motif RY45_17235 IPR001633 EAL domain RY45_17235 IPR013656 PAS fold-4 RY45_17235 IPR029787 Nucleotide cyclase RY45_17235 IPR035919 RY45_17235 RY45_17235 IPR035965 RY45_17235 RY45_17245 IPR000873 AMP-dependent synthetase/ligase RY45_17245 IPR011904 Acetate-CoA ligase RY45_17245 IPR020845 AMP-binding, conserved site RY45_17245 IPR025110 AMP-binding enzyme C-terminal domain RY45_17245 IPR032387 RY45_17245 RY45_17250 IPR001874 Dehydroquinase, class II RY45_17250 IPR018509 Dehydroquinase, class II, conserved site RY45_17250 IPR036441 RY45_17250 RY45_17255 IPR000089 Biotin/lipoyl attachment RY45_17255 IPR001249 Acetyl-CoA biotin carboxyl carrier RY45_17255 IPR001882 Biotin-binding site RY45_17255 IPR011053 Single hybrid motif RY45_17260 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase RY45_17260 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RY45_17260 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal RY45_17260 IPR005482 Biotin carboxylase, C-terminal RY45_17260 IPR011054 Rudiment single hybrid motif RY45_17260 IPR013815 ATP-grasp fold, subdomain 1 RY45_17260 IPR016185 Pre-ATP-grasp domain RY45_17265 IPR010398 Protein of unknown function DUF997 RY45_17270 IPR001734 Sodium/solute symporter RY45_17270 IPR011849 Sodium/pantothenate symporter RY45_17270 IPR038377 RY45_17270 RY45_17275 IPR003352 Phosphotransferase system, EIIC RY45_17275 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site RY45_17275 IPR036878 RY45_17275 RY45_17280 IPR000847 Transcription regulator HTH, LysR RY45_17280 IPR005119 LysR, substrate-binding RY45_17280 IPR036388 RY45_17280 RY45_17280 IPR036390 RY45_17280 RY45_17285 IPR011032 GroES (chaperonin 10)-like RY45_17285 IPR013154 Alcohol dehydrogenase GroES-like RY45_17285 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 RY45_17285 IPR020843 Polyketide synthase, enoylreductase RY45_17285 IPR036291 RY45_17285 RY45_17290 IPR004498 Ribosomal protein L11 methyltransferase RY45_17290 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_17295 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_17295 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RY45_17295 IPR036291 RY45_17295 RY45_17300 IPR001451 Bacterial transferase hexapeptide repeat RY45_17300 IPR011004 Trimeric LpxA-like RY45_17300 IPR018357 Hexapeptide transferase, conserved site RY45_17300 IPR024688 Maltose/galactoside acetyltransferase RY45_17305 IPR000415 Nitroreductase-like RY45_17305 IPR026021 Putative NAD(P)H nitroreductase YdjA-like RY45_17305 IPR029479 Nitroreductase RY45_17310 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II RY45_17310 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal RY45_17310 IPR013785 Aldolase-type TIM barrel RY45_17310 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_17310 IPR036188 RY45_17310 RY45_17315 IPR002142 Peptidase S49 RY45_17315 IPR004634 Peptidase S49, protease IV RY45_17315 IPR004635 Peptidase S49, SppA RY45_17315 IPR029045 ClpP/crotonase-like domain RY45_17320 IPR000086 NUDIX hydrolase domain RY45_17320 IPR015797 NUDIX hydrolase domain-like RY45_17320 IPR020084 NUDIX hydrolase, conserved site RY45_17325 IPR021372 Protein of unknown function DUF2989 RY45_17330 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I RY45_17330 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain RY45_17330 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain RY45_17330 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site RY45_17330 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family RY45_17330 IPR036291 RY45_17330 RY45_17335 IPR009749 Protein of unknown function DUF1315 RY45_17340 IPR006033 L-asparaginase, type I RY45_17340 IPR006034 Asparaginase/glutaminase RY45_17340 IPR020827 Asparaginase/glutaminase, active site 1 RY45_17340 IPR027473 L-asparaginase, C-terminal domain RY45_17340 IPR027474 L-asparaginase, N-terminal RY45_17340 IPR027475 Asparaginase/glutaminase, active site 2 RY45_17340 IPR036152 RY45_17340 RY45_17340 IPR037152 RY45_17340 RY45_17345 IPR004445 Sodium/glutamate symporter RY45_17350 IPR003660 HAMP linker domain RY45_17350 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_17350 IPR029151 Periplasmic sensor domain-like RY45_17350 IPR033479 RY45_17350 RY45_17355 IPR000352 Peptide chain release factor class I/class II RY45_17355 IPR004374 Peptide chain release factor 2 RY45_17355 IPR005139 Peptide chain release factor RY45_17360 IPR002313 Lysine-tRNA ligase, class II RY45_17360 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) RY45_17360 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type RY45_17360 IPR012340 Nucleic acid-binding, OB-fold RY45_17360 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal RY45_17360 IPR034762 RY45_17360 RY45_17365 IPR003719 Phenazine biosynthesis PhzF protein RY45_17370 IPR001094 Flavodoxin RY45_17370 IPR001433 Oxidoreductase FAD/NAD(P)-binding RY45_17370 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RY45_17370 IPR003097 FAD-binding, type 1 RY45_17370 IPR008254 Flavodoxin/nitric oxide synthase RY45_17370 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain RY45_17370 IPR017938 Riboflavin synthase-like beta-barrel RY45_17370 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 RY45_17370 IPR029039 Flavoprotein-like RY45_17370 IPR039261 RY45_17370 RY45_17375 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain RY45_17375 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site RY45_17375 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain RY45_17375 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit RY45_17375 IPR036136 RY45_17375 RY45_17380 IPR002500 Phosphoadenosine phosphosulphate reductase RY45_17380 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase RY45_17380 IPR011800 Phosphoadenosine phosphosulphate reductase CysH RY45_17380 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_17385 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain RY45_17390 IPR000515 MetI-like domain RY45_17390 IPR035906 RY45_17390 RY45_17395 IPR000644 CBS domain RY45_17395 IPR003439 ABC transporter-like RY45_17395 IPR003593 AAA+ ATPase domain RY45_17395 IPR005892 Glycine betaine transport ATP-binding subunit RY45_17395 IPR017871 ABC transporter, conserved site RY45_17395 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17400 IPR001796 Dihydrofolate reductase domain RY45_17400 IPR012259 Dihydrofolate reductase RY45_17400 IPR017925 Dihydrofolate reductase conserved site RY45_17400 IPR024072 Dihydrofolate reductase-like domain RY45_17405 IPR024528 Domain of unknown function DUF3815 RY45_17410 IPR010619 Domain of unknown function DUF1212 RY45_17415 IPR021482 Protein of unknown function DUF3135 RY45_17420 IPR001453 Molybdopterin binding domain RY45_17420 IPR008284 Molybdenum cofactor biosynthesis, conserved site RY45_17420 IPR036425 RY45_17420 RY45_17425 IPR020240 Uncharacterised protein family UPF0412, YaaI RY45_17430 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_17430 IPR014031 Beta-ketoacyl synthase, C-terminal RY45_17430 IPR016039 Thiolase-like RY45_17430 IPR018201 Beta-ketoacyl synthase, active site RY45_17430 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RY45_17435 IPR002347 Glucose/ribitol dehydrogenase RY45_17435 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative RY45_17435 IPR036291 RY45_17435 RY45_17440 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted RY45_17440 IPR029069 HotDog domain RY45_17445 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_17445 IPR014031 Beta-ketoacyl synthase, C-terminal RY45_17445 IPR016039 Thiolase-like RY45_17445 IPR018201 Beta-ketoacyl synthase, active site RY45_17445 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RY45_17450 IPR021675 Protein of unknown function DUF3261 RY45_17460 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RY45_17460 IPR029046 Lipoprotein localisation LolA/LolB/LppX RY45_17465 IPR006683 Thioesterase superfamily RY45_17465 IPR029069 HotDog domain RY45_17470 IPR001106 Aromatic amino acid lyase RY45_17470 IPR008948 L-Aspartase-like RY45_17470 IPR022313 Phenylalanine/histidine ammonia-lyases, active site RY45_17470 IPR024083 Fumarase/histidase, N-terminal RY45_17475 IPR001173 Glycosyltransferase 2-like RY45_17475 IPR004960 Bacterial lipid A biosynthesis acyltransferase RY45_17475 IPR029044 Nucleotide-diphospho-sugar transferases RY45_17480 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ RY45_17480 IPR016962 Dehydrase, ECs4332, predicted RY45_17480 IPR029069 HotDog domain RY45_17485 IPR000873 AMP-dependent synthetase/ligase RY45_17495 IPR003231 Acyl carrier protein (ACP) RY45_17495 IPR009081 Acyl carrier protein-like RY45_17495 IPR036736 RY45_17495 RY45_17500 IPR009081 Acyl carrier protein-like RY45_17500 IPR036736 RY45_17500 RY45_17505 IPR002123 Phospholipid/glycerol acyltransferase RY45_17510 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_17510 IPR016039 Thiolase-like RY45_17520 IPR001077 O-methyltransferase, family 2 RY45_17520 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_17520 IPR036388 RY45_17520 RY45_17530 IPR001604 DNA/RNA non-specific endonuclease RY45_17530 IPR018524 DNA/RNA non-specific endonuclease, active site RY45_17530 IPR020821 Extracellular Endonuclease, subunit A RY45_17535 IPR004852 Di-haem cytochrome c peroxidase RY45_17535 IPR009056 Cytochrome c-like domain RY45_17535 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase RY45_17535 IPR036909 RY45_17535 RY45_17540 IPR001148 Alpha carbonic anhydrase RY45_17540 IPR018338 Carbonic anhydrase, alpha-class, conserved site RY45_17540 IPR036398 RY45_17540 RY45_17545 IPR007342 Pseudouridine-5'-phosphate glycosidase RY45_17545 IPR022830 RY45_17545 RY45_17550 IPR000485 AsnC-type HTH domain RY45_17550 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site RY45_17550 IPR011611 Carbohydrate kinase PfkB RY45_17550 IPR029056 Ribokinase-like RY45_17550 IPR036388 RY45_17550 RY45_17550 IPR036390 RY45_17550 RY45_17555 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD RY45_17555 IPR036922 RY45_17555 RY45_17560 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain RY45_17560 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site RY45_17560 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain RY45_17560 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_17560 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB RY45_17560 IPR017121 Nitrite reductase [NAD(P)H], large subunit RY45_17560 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_17560 IPR036136 RY45_17560 RY45_17560 IPR036188 RY45_17560 RY45_17565 IPR003439 ABC transporter-like RY45_17565 IPR003593 AAA+ ATPase domain RY45_17565 IPR005890 Nitrate transport ATP-binding subunit C/D RY45_17565 IPR017871 ABC transporter, conserved site RY45_17565 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17570 IPR000515 MetI-like domain RY45_17570 IPR035906 RY45_17570 RY45_17580 IPR005561 ANTAR domain RY45_17580 IPR011006 CheY-like superfamily RY45_17580 IPR036388 RY45_17580 RY45_17585 IPR000878 Tetrapyrrole methylase RY45_17585 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site RY45_17585 IPR006366 Uroporphyrin-III C-methyltransferase RY45_17585 IPR014776 Tetrapyrrole methylase, subdomain 2 RY45_17585 IPR014777 Tetrapyrrole methylase, subdomain 1 RY45_17585 IPR035996 RY45_17585 RY45_17590 IPR006656 Molybdopterin oxidoreductase RY45_17590 IPR006657 Molydopterin dinucleotide-binding domain RY45_17590 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RY45_17590 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_17590 IPR009010 Aspartate decarboxylase-like domain RY45_17590 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site RY45_17595 IPR001537 tRNA/rRNA methyltransferase, SpoU type RY45_17595 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_17595 IPR029028 Alpha/beta knot methyltransferases RY45_17605 IPR006015 Universal stress protein A RY45_17605 IPR006016 UspA RY45_17605 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_17610 IPR032676 RY45_17610 RY45_17615 IPR000965 Gamma-glutamyl phosphate reductase GPR RY45_17615 IPR012134 Glutamate-5-semialdehyde dehydrogenase RY45_17615 IPR015590 Aldehyde dehydrogenase domain RY45_17615 IPR016161 Aldehyde/histidinol dehydrogenase RY45_17615 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_17615 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_17615 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site RY45_17620 IPR001048 Aspartate/glutamate/uridylate kinase RY45_17620 IPR001057 Glutamate/acetylglutamate kinase RY45_17620 IPR002478 PUA domain RY45_17620 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase RY45_17620 IPR011529 Glutamate 5-kinase RY45_17620 IPR015947 PUA-like domain RY45_17620 IPR019797 Glutamate 5-kinase, conserved site RY45_17620 IPR036393 RY45_17620 RY45_17620 IPR036974 RY45_17620 RY45_17625 IPR009986 Sigma factor-binding protein Crl RY45_17625 IPR038208 RY45_17625 RY45_17630 IPR010520 Protein of unknown function DUF1100, hydrolase-like RY45_17630 IPR029058 Alpha/Beta hydrolase fold RY45_17635 IPR000836 Phosphoribosyltransferase domain RY45_17635 IPR023747 Xanthine-guanine phosphoribosyltransferase RY45_17635 IPR029057 Phosphoribosyltransferase-like RY45_17640 IPR001160 Peptidase M20C, Xaa-His dipeptidase RY45_17640 IPR002933 Peptidase M20 RY45_17640 IPR011650 Peptidase M20, dimerisation domain RY45_17645 IPR003439 ABC transporter-like RY45_17645 IPR003593 AAA+ ATPase domain RY45_17645 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RY45_17645 IPR017871 ABC transporter, conserved site RY45_17645 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17650 IPR003439 ABC transporter-like RY45_17650 IPR003593 AAA+ ATPase domain RY45_17650 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RY45_17650 IPR017871 ABC transporter, conserved site RY45_17650 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17655 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_17655 IPR030678 RY45_17655 RY45_17660 IPR000515 MetI-like domain RY45_17660 IPR035906 RY45_17660 RY45_17665 IPR000515 MetI-like domain RY45_17665 IPR035906 RY45_17665 RY45_17670 IPR000531 TonB-dependent receptor, beta-barrel RY45_17670 IPR012910 TonB-dependent receptor, plug RY45_17670 IPR036942 RY45_17670 RY45_17670 IPR037066 RY45_17670 RY45_17675 IPR016866 Uncharacterised conserved protein UCP028069 RY45_17680 IPR002898 MotA/TolQ/ExbB proton channel RY45_17680 IPR017270 Outer membrane stability protein, TolR RY45_17685 IPR002898 MotA/TolQ/ExbB proton channel RY45_17690 IPR003400 Biopolymer transport protein ExbD/TolR RY45_17695 IPR006260 TonB, C-terminal RY45_17695 IPR037682 RY45_17695 RY45_17700 IPR011990 Tetratricopeptide-like helical domain RY45_17700 IPR019734 Tetratricopeptide repeat RY45_17710 IPR020008 GlyGly-CTERM domain RY45_17710 IPR036691 RY45_17710 RY45_17715 IPR024445 Transposase, ISXO2-like RY45_17750 IPR000924 Glutamyl/glutaminyl-tRNA synthetase RY45_17750 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_17750 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial RY45_17750 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding RY45_17750 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_17750 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RY45_17750 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 RY45_17755 IPR003660 HAMP linker domain RY45_17755 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_17755 IPR004090 Chemotaxis methyl-accepting receptor RY45_17760 IPR007340 Opacity-associated protein A RY45_17765 IPR002059 Cold-shock protein, DNA-binding RY45_17765 IPR011129 Cold shock protein RY45_17765 IPR012156 Cold shock, CspA RY45_17765 IPR012340 Nucleic acid-binding, OB-fold RY45_17765 IPR019844 Cold-shock conserved site RY45_17795 IPR012337 Ribonuclease H-like domain RY45_17795 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_17795 IPR022894 Oligoribonuclease RY45_17795 IPR036397 RY45_17795 RY45_17800 IPR004881 Ribosome biogenesis GTPase RsgA, putative RY45_17800 IPR010914 EngC GTPase RY45_17800 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17805 IPR003817 Phosphatidylserine decarboxylase-related RY45_17805 IPR033177 RY45_17805 RY45_17805 IPR033178 RY45_17805 RY45_17810 IPR018668 Protein of unknown function DUF2132 RY45_17810 IPR036361 RY45_17810 RY45_17815 IPR021343 Protein of unknown function DUF2960 RY45_17825 IPR007339 Protein of unknown function DUF417 RY45_17825 IPR016865 Uncharacterised conserved protein UCP028065, membrane RY45_17830 IPR003779 Carboxymuconolactone decarboxylase-like RY45_17830 IPR004675 Alkylhydroperoxidase AhpD core RY45_17830 IPR029032 AhpD-like RY45_17835 IPR009057 Homeodomain-like RY45_17835 IPR011051 RmlC-like cupin domain RY45_17835 IPR014710 RmlC-like jelly roll fold RY45_17835 IPR018060 DNA binding HTH domain, AraC-type RY45_17835 IPR018062 HTH domain AraC-type, conserved site RY45_17835 IPR020449 Transcription regulator HTH, AraC- type RY45_17835 IPR032783 RY45_17835 RY45_17845 IPR000014 PAS domain RY45_17845 IPR000160 GGDEF domain RY45_17845 IPR001633 EAL domain RY45_17845 IPR013656 PAS fold-4 RY45_17845 IPR029787 Nucleotide cyclase RY45_17845 IPR035919 RY45_17845 RY45_17845 IPR035965 RY45_17845 RY45_17850 IPR009671 Regulator of ribonuclease activity B domain RY45_17850 IPR016716 Regulator of ribonuclease activity B RY45_17850 IPR036701 RY45_17850 RY45_17855 IPR008757 Peptidase M6-like, domain RY45_17855 IPR012300 Peptidase M6, InhA RY45_17870 IPR000073 Alpha/beta hydrolase fold-1 RY45_17870 IPR002410 Peptidase S33 RY45_17870 IPR029058 Alpha/Beta hydrolase fold RY45_17875 IPR003439 ABC transporter-like RY45_17875 IPR003593 AAA+ ATPase domain RY45_17875 IPR011527 ABC transporter type 1, transmembrane domain RY45_17875 IPR017871 ABC transporter, conserved site RY45_17875 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17875 IPR036640 RY45_17875 RY45_17880 IPR010305 Protein of unknown function DUF903 RY45_17880 IPR010920 Like-Sm (LSM) domain RY45_17885 IPR000209 Peptidase S8/S53 domain RY45_17885 IPR015500 Peptidase S8, subtilisin-related RY45_17885 IPR022398 Peptidase S8, subtilisin, His-active site RY45_17885 IPR023828 Peptidase S8, subtilisin, Ser-active site RY45_17885 IPR036852 RY45_17885 RY45_17885 IPR037045 RY45_17885 RY45_17890 IPR001307 Thiosulphate sulfurtransferase, conserved site RY45_17890 IPR001763 Rhodanese-like domain RY45_17890 IPR036873 RY45_17890 RY45_17895 IPR012338 Beta-lactamase/transpeptidase-like RY45_17895 IPR015868 Glutaminase RY45_17900 IPR007416 Protein of unknown function DUF469 RY45_17905 IPR003358 tRNA (guanine-N-7) methyltransferase RY45_17905 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_17910 IPR007484 Peptidase M28 RY45_17915 IPR004839 Aminotransferase, class I/classII RY45_17915 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_17915 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_17915 IPR015424 Pyridoxal phosphate-dependent transferase RY45_17920 IPR001633 EAL domain RY45_17920 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain RY45_17920 IPR035919 RY45_17920 RY45_17925 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain RY45_17925 IPR010099 Sugar nucleotide epimerase YfcH,-like putative RY45_17925 IPR013549 Domain of unknown function DUF1731 RY45_17925 IPR036291 RY45_17925 RY45_17930 IPR003838 Permease FtsX-like RY45_17935 IPR003439 ABC transporter-like RY45_17935 IPR003593 AAA+ ATPase domain RY45_17935 IPR017871 ABC transporter, conserved site RY45_17935 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17940 IPR008265 Lipase, GDSL, active site RY45_17940 IPR013830 RY45_17940 RY45_17940 IPR036514 RY45_17940 RY45_17945 IPR001789 Signal transduction response regulator, receiver domain RY45_17945 IPR002545 CheW-like protein RY45_17945 IPR011006 CheY-like superfamily RY45_17945 IPR024181 Chemotaxis response regulator CheV RY45_17945 IPR036061 RY45_17945 RY45_17955 IPR006037 Regulator of K+ conductance, C-terminal RY45_17955 IPR006512 YidE/YbjL duplication RY45_17955 IPR023018 Transport protein YidE, putative RY45_17955 IPR036721 RY45_17955 RY45_17960 IPR004254 Hly-III-related RY45_17960 IPR005744 HylII RY45_17965 IPR002129 Pyridoxal phosphate-dependent decarboxylase RY45_17965 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_17965 IPR015424 Pyridoxal phosphate-dependent transferase RY45_17970 IPR006008 Intracellular septation protein A RY45_17975 IPR005545 YCII-related RY45_17975 IPR011008 Dimeric alpha-beta barrel RY45_17980 IPR000760 Inositol monophosphatase RY45_17980 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial RY45_17980 IPR020583 Inositol monophosphatase, metal-binding site RY45_17985 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 RY45_17985 IPR004509 Competence protein ComEA, helix-hairpin-helix domain RY45_17985 IPR010994 RuvA domain 2-like RY45_17990 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type RY45_17990 IPR005835 Nucleotidyl transferase RY45_17990 IPR029044 Nucleotide-diphospho-sugar transferases RY45_17995 IPR000109 Proton-dependent oligopeptide transporter family RY45_17995 IPR005279 Amino acid/peptide transporter family RY45_17995 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site RY45_17995 IPR036259 RY45_17995 RY45_18000 IPR001789 Signal transduction response regulator, receiver domain RY45_18000 IPR011006 CheY-like superfamily RY45_18000 IPR036457 RY45_18000 RY45_18010 IPR002611 IstB-like ATP-binding protein RY45_18010 IPR003593 AAA+ ATPase domain RY45_18010 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18015 IPR016040 NAD(P)-binding domain RY45_18015 IPR036291 RY45_18015 RY45_18030 IPR039562 RY45_18030 RY45_18035 IPR003423 Outer membrane efflux protein RY45_18040 IPR001269 tRNA-dihydrouridine synthase RY45_18040 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 RY45_18040 IPR013785 Aldolase-type TIM barrel RY45_18040 IPR018517 tRNA-dihydrouridine synthase, conserved site RY45_18040 IPR032887 RY45_18040 RY45_18045 IPR002197 DNA binding HTH domain, Fis-type RY45_18045 IPR005412 DNA-binding protein Fis RY45_18045 IPR009057 Homeodomain-like RY45_18050 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_18075 IPR000361 FeS cluster biogenesis RY45_18075 IPR016092 FeS cluster insertion protein RY45_18075 IPR017870 FeS cluster insertion, C-terminal, conserved site RY45_18075 IPR023063 Iron-sulfur cluster insertion protein ErpA RY45_18075 IPR035903 RY45_18075 RY45_18085 IPR001807 Chloride channel, voltage gated RY45_18085 IPR014743 Chloride channel, core RY45_18090 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase RY45_18090 IPR005814 Aminotransferase class-III RY45_18090 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_18090 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_18090 IPR015424 Pyridoxal phosphate-dependent transferase RY45_18100 IPR002781 Transmembrane protein TauE like RY45_18105 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_18105 IPR036938 RY45_18105 RY45_18110 IPR022584 Protein of unknown function DUF2937 RY45_18115 IPR001789 Signal transduction response regulator, receiver domain RY45_18115 IPR003607 HD/PDEase domain RY45_18115 IPR006674 HD domain RY45_18115 IPR011006 CheY-like superfamily RY45_18115 IPR021800 Domain of unknown function DUF3369 RY45_18120 IPR000847 Transcription regulator HTH, LysR RY45_18120 IPR005119 LysR, substrate-binding RY45_18120 IPR036388 RY45_18120 RY45_18120 IPR036390 RY45_18120 RY45_18125 IPR000390 Small multidrug resistance protein family RY45_18130 IPR000390 Small multidrug resistance protein family RY45_18135 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_18135 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_18140 IPR001264 Glycosyl transferase, family 51 RY45_18140 IPR001460 Penicillin-binding protein, transpeptidase RY45_18140 IPR011813 Penicillin-binding protein 1B RY45_18140 IPR012338 Beta-lactamase/transpeptidase-like RY45_18140 IPR023346 Lysozyme-like domain RY45_18140 IPR028166 Bifunctional transglycosylase second domain RY45_18140 IPR036950 RY45_18140 RY45_18145 IPR001650 Helicase, C-terminal RY45_18145 IPR007502 Helicase-associated domain RY45_18145 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type RY45_18145 IPR011545 DEAD/DEAH box helicase domain RY45_18145 IPR013689 RNA helicase, ATP-dependent, HrpB type, C-terminal RY45_18145 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_18145 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18155 IPR005224 Sugar fermentation stimulation protein RY45_18160 IPR000962 Zinc finger, DksA/TraR C4-type RY45_18160 IPR012784 RNA polymerase-binding transcription factor DksA RY45_18160 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RY45_18160 IPR037187 RY45_18160 RY45_18165 IPR000924 Glutamyl/glutaminyl-tRNA synthetase RY45_18165 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_18165 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RY45_18165 IPR022380 Glutamyl-Q tRNA(Asp) synthetase RY45_18170 IPR002646 Poly A polymerase, head domain RY45_18170 IPR010206 Poly(A) polymerase I RY45_18170 IPR025866 Polymerase A arginine-rich C-terminal domain RY45_18170 IPR032828 RY45_18170 RY45_18175 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK RY45_18175 IPR035907 RY45_18175 RY45_18180 IPR003700 Ketopantoate hydroxymethyltransferase RY45_18180 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain RY45_18185 IPR003721 Pantoate-beta-alanine ligase RY45_18185 IPR004821 Cytidyltransferase-like domain RY45_18185 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_18190 IPR001763 Rhodanese-like domain RY45_18190 IPR036873 RY45_18190 RY45_18200 IPR005416 Type III secretion chaperone SycE RY45_18200 IPR010261 Tir chaperone protein (CesT) family RY45_18210 IPR021778 Protein of unknown function DUF3343 RY45_18215 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type RY45_18215 IPR008275 CoA enzyme activase RY45_18220 IPR010327 2-hydroxyglutaryl-CoA dehydratase, D-component RY45_18225 IPR000412 ABC-2 transporter RY45_18225 IPR013525 ABC-2 type transporter RY45_18230 IPR003439 ABC transporter-like RY45_18230 IPR003593 AAA+ ATPase domain RY45_18230 IPR017871 ABC transporter, conserved site RY45_18230 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18235 IPR000836 Phosphoribosyltransferase domain RY45_18235 IPR005904 Hypoxanthine phosphoribosyl transferase RY45_18235 IPR029057 Phosphoribosyltransferase-like RY45_18240 IPR001647 DNA-binding HTH domain, TetR-type RY45_18240 IPR009057 Homeodomain-like RY45_18240 IPR036271 RY45_18240 RY45_18245 IPR003382 Flavoprotein RY45_18245 IPR004507 Decarboxylase UbiX/Pad1 RY45_18245 IPR036551 RY45_18245 RY45_18250 IPR000713 Mur ligase, N-terminal RY45_18250 IPR004101 Mur ligase, C-terminal RY45_18250 IPR005757 Murein peptide ligase RY45_18250 IPR013221 Mur ligase, central RY45_18250 IPR036565 RY45_18250 RY45_18250 IPR036615 RY45_18250 RY45_18255 IPR008162 Inorganic pyrophosphatase RY45_18255 IPR036649 RY45_18255 RY45_18270 IPR006513 Conserved hypothetical protein CHP01626, YtfJ RY45_18280 IPR021253 Protein of unknown function DUF2796 RY45_18285 IPR003439 ABC transporter-like RY45_18285 IPR003593 AAA+ ATPase domain RY45_18285 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18290 IPR003838 Permease FtsX-like RY45_18290 IPR025857 MacB-like periplasmic core domain RY45_18295 IPR021727 Protein of unknown function DUF3299 RY45_18300 IPR021254 Protein of unknown function DUF2806 RY45_18305 IPR000014 PAS domain RY45_18305 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_18305 IPR013655 PAS fold-3 RY45_18305 IPR035965 RY45_18305 RY45_18315 IPR002891 Adenylylsulphate kinase RY45_18315 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18320 IPR004680 Citrate transporter-like domain RY45_18320 IPR006037 Regulator of K+ conductance, C-terminal RY45_18320 IPR036721 RY45_18320 RY45_18325 IPR000795 Elongation factor, GTP-binding domain RY45_18325 IPR005225 Small GTP-binding protein domain RY45_18325 IPR009000 Translation protein, beta-barrel domain RY45_18325 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RY45_18325 IPR011779 Sulphate adenylyltransferase, large subunit RY45_18325 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18325 IPR031157 RY45_18325 RY45_18330 IPR002500 Phosphoadenosine phosphosulphate reductase RY45_18330 IPR011784 Sulphate adenylyltransferase, small subunit RY45_18330 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_18335 IPR000878 Tetrapyrrole methylase RY45_18335 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site RY45_18335 IPR006366 Uroporphyrin-III C-methyltransferase RY45_18335 IPR006367 Sirohaem synthase, N-terminal RY45_18335 IPR012409 Sirohaem synthase RY45_18335 IPR014776 Tetrapyrrole methylase, subdomain 2 RY45_18335 IPR014777 Tetrapyrrole methylase, subdomain 1 RY45_18335 IPR019478 Sirohaem synthase, dimerisation domain RY45_18335 IPR028281 Siroheme synthase, central domain RY45_18335 IPR035996 RY45_18335 RY45_18335 IPR036291 RY45_18335 RY45_18335 IPR037115 RY45_18335 RY45_18340 IPR001107 Band 7 protein RY45_18340 IPR001972 Stomatin family RY45_18340 IPR036013 RY45_18340 RY45_18345 IPR002810 NfeD-like, C-terminal domain RY45_18350 IPR000644 CBS domain RY45_18355 IPR003439 ABC transporter-like RY45_18355 IPR003593 AAA+ ATPase domain RY45_18355 IPR017871 ABC transporter, conserved site RY45_18355 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18355 IPR032524 RY45_18355 RY45_18355 IPR032781 RY45_18355 RY45_18360 IPR012659 Conserved hypothetical protein CHP02444 RY45_18365 IPR007473 Ribosomal RNA large subunit methyltransferase J RY45_18365 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_18375 IPR025359 Protein of unknown function DUF4263 RY45_18380 IPR018638 Domain of unknown function DUF2061, membrane RY45_18385 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_18385 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_18390 IPR000551 MerR-type HTH domain RY45_18390 IPR009061 DNA binding domain, putative RY45_18395 IPR003680 Flavodoxin-like fold RY45_18395 IPR029039 Flavoprotein-like RY45_18400 IPR001734 Sodium/solute symporter RY45_18400 IPR011851 Sodium/proline symporter RY45_18400 IPR018212 Sodium/solute symporter, conserved site RY45_18400 IPR038377 RY45_18400 RY45_18405 IPR005490 L,D-transpeptidase catalytic domain RY45_18405 IPR038063 RY45_18405 RY45_18410 IPR006685 Mechanosensitive ion channel MscS RY45_18410 IPR010920 Like-Sm (LSM) domain RY45_18415 IPR000890 Aliphatic acid kinase, short-chain RY45_18415 IPR004372 Acetate/Proprionate kinase RY45_18415 IPR023865 Aliphatic acid kinase, short-chain, conserved site RY45_18420 IPR004375 Conserved hypothetical protein CHP00022 RY45_18420 IPR037012 RY45_18420 RY45_18425 IPR002123 Phospholipid/glycerol acyltransferase RY45_18430 IPR002355 Multicopper oxidase, copper-binding site RY45_18430 IPR008972 Cupredoxin RY45_18430 IPR011706 Multicopper oxidase, type 2 RY45_18430 IPR011707 Multicopper oxidase, type 3 RY45_18430 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_18435 IPR001920 Asp/Glu racemase RY45_18435 IPR004380 Aspartate racemase RY45_18435 IPR015942 Asp/Glu/hydantoin racemase RY45_18440 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_18445 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_18450 IPR000524 Transcription regulator HTH, GntR RY45_18450 IPR004839 Aminotransferase, class I/classII RY45_18450 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_18450 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_18450 IPR015424 Pyridoxal phosphate-dependent transferase RY45_18450 IPR036388 RY45_18450 RY45_18450 IPR036390 RY45_18450 RY45_18465 IPR017853 Glycoside hydrolase, superfamily RY45_18465 IPR021488 Protein of unknown function DUF3142 RY45_18475 IPR000175 Sodium:neurotransmitter symporter RY45_18475 IPR037272 RY45_18475 RY45_18480 IPR001638 Extracellular solute-binding protein, family 3 RY45_18485 IPR000175 Sodium:neurotransmitter symporter RY45_18485 IPR037272 RY45_18485 RY45_18490 IPR005123 Oxoglutarate/iron-dependent dioxygenase RY45_18490 IPR026992 Non-haem dioxygenase N-terminal domain RY45_18490 IPR027443 Isopenicillin N synthase-like RY45_18495 IPR021242 Protein of unknown function DUF2799 RY45_18500 IPR000150 Cof protein RY45_18500 IPR006379 HAD-superfamily hydrolase, subfamily IIB RY45_18500 IPR023214 HAD-like domain RY45_18500 IPR036412 RY45_18500 RY45_18505 IPR011701 Major facilitator superfamily RY45_18505 IPR036259 RY45_18505 RY45_18510 IPR013196 Helix-turn-helix, type 11 RY45_18510 IPR036388 RY45_18510 RY45_18510 IPR036390 RY45_18510 RY45_18515 IPR000485 AsnC-type HTH domain RY45_18515 IPR011008 Dimeric alpha-beta barrel RY45_18515 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RY45_18515 IPR019887 Transcription regulator AsnC-type, C-terminal RY45_18515 IPR019888 Transcription regulator AsnC-type RY45_18515 IPR036388 RY45_18515 RY45_18515 IPR036390 RY45_18515 RY45_18520 IPR036700 RY45_18520 RY45_18530 IPR000835 MarR-type HTH domain RY45_18530 IPR036388 RY45_18530 RY45_18530 IPR036390 RY45_18530 RY45_18535 IPR003718 OsmC/Ohr family RY45_18535 IPR015946 K homology domain-like, alpha/beta RY45_18535 IPR019953 Organic hydroperoxide resistance protein famiy RY45_18535 IPR036102 RY45_18535 RY45_18540 IPR011032 GroES (chaperonin 10)-like RY45_18540 IPR013149 Alcohol dehydrogenase, C-terminal RY45_18540 IPR020843 Polyketide synthase, enoylreductase RY45_18540 IPR036291 RY45_18540 RY45_18545 IPR000086 NUDIX hydrolase domain RY45_18545 IPR015797 NUDIX hydrolase domain-like RY45_18545 IPR020084 NUDIX hydrolase, conserved site RY45_18545 IPR020476 NUDIX hydrolase RY45_18555 IPR002579 Peptide methionine sulphoxide reductase MrsB RY45_18555 IPR011057 Mss4-like RY45_18560 IPR004193 Glycoside hydrolase, family 13, N-terminal RY45_18560 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_18560 IPR011837 Glycogen debranching enzyme, GlgX type RY45_18560 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_18560 IPR013783 Immunoglobulin-like fold RY45_18560 IPR014756 Immunoglobulin E-set RY45_18560 IPR017853 Glycoside hydrolase, superfamily RY45_18565 IPR004193 Glycoside hydrolase, family 13, N-terminal RY45_18565 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_18565 IPR006048 Alpha-amylase, C-terminal all beta RY45_18565 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB RY45_18565 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_18565 IPR013783 Immunoglobulin-like fold RY45_18565 IPR014756 Immunoglobulin E-set RY45_18565 IPR017853 Glycoside hydrolase, superfamily RY45_18565 IPR037439 RY45_18565 RY45_18570 IPR003385 Glycoside hydrolase, family 77 RY45_18570 IPR017853 Glycoside hydrolase, superfamily RY45_18575 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I RY45_18575 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain RY45_18575 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain RY45_18575 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site RY45_18575 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family RY45_18575 IPR036291 RY45_18575 RY45_18580 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase RY45_18580 IPR011013 Galactose mutarotase-like domain RY45_18580 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup RY45_18580 IPR025532 Glucose-6-phosphate 1-epimerase RY45_18585 IPR003473 Quinolinate synthetase A RY45_18585 IPR023513 Quinolinate synthase A, type 1 RY45_18585 IPR036094 RY45_18585 RY45_18590 IPR003660 HAMP linker domain RY45_18590 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_18590 IPR033479 RY45_18590 RY45_18625 IPR011990 Tetratricopeptide-like helical domain RY45_18625 IPR014162 Tol-Pal system, YbgF RY45_18625 IPR019734 Tetratricopeptide repeat RY45_18625 IPR032519 RY45_18625 RY45_18625 IPR034706 RY45_18625 RY45_18630 IPR006664 Outer membrane protein, bacterial RY45_18630 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_18630 IPR006690 Outer membrane protein, OmpA-like, conserved site RY45_18630 IPR014169 Peptidoglycan-associated lipoprotein RY45_18630 IPR036737 RY45_18630 RY45_18630 IPR039001 RY45_18630 RY45_18635 IPR007195 TolB, N-terminal RY45_18635 IPR011042 Six-bladed beta-propeller, TolB-like RY45_18635 IPR011659 WD40-like Beta Propeller RY45_18635 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB RY45_18635 IPR036752 RY45_18635 RY45_18640 IPR014161 Tol-Pal system, TolA RY45_18645 IPR003400 Biopolymer transport protein ExbD/TolR RY45_18645 IPR014168 Biopolymer transport, TolR RY45_18650 IPR002898 MotA/TolQ/ExbB proton channel RY45_18650 IPR014163 Tol-Pal system, TolQ RY45_18655 IPR006683 Thioesterase superfamily RY45_18655 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family RY45_18655 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase RY45_18655 IPR029069 HotDog domain RY45_18660 IPR011846 Cyd operon protein YbgE RY45_18665 IPR011724 Cyd operon protein YbgT RY45_18665 IPR012994 Membrane bound YbgT-like RY45_18670 IPR003317 Cytochrome d ubiquinol oxidase, subunit II RY45_18675 IPR002585 Cytochrome d ubiquinol oxidase, subunit I RY45_18680 IPR003593 AAA+ ATPase domain RY45_18680 IPR004605 DNA helicase, Holliday junction RuvB type RY45_18680 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal RY45_18680 IPR008824 DNA helicase, Holliday junction RuvB type, N-terminal RY45_18680 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18680 IPR036388 RY45_18680 RY45_18680 IPR036390 RY45_18680 RY45_18685 IPR000085 Bacterial DNA recombination protein RuvA RY45_18685 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 RY45_18685 IPR010994 RuvA domain 2-like RY45_18685 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal RY45_18685 IPR012340 Nucleic acid-binding, OB-fold RY45_18685 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial RY45_18685 IPR036267 RY45_18685 RY45_18690 IPR003660 HAMP linker domain RY45_18690 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_18695 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain RY45_18695 IPR002316 Proline-tRNA ligase, class IIa RY45_18695 IPR004154 Anticodon-binding RY45_18695 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type RY45_18695 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain RY45_18695 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 RY45_18695 IPR036621 RY45_18695 RY45_18695 IPR036754 RY45_18695 RY45_18700 IPR002347 Glucose/ribitol dehydrogenase RY45_18700 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_18700 IPR036291 RY45_18700 RY45_18705 IPR026387 Outer membrane protein RY45_18710 IPR007410 DR1885-like metal-binding protein RY45_18710 IPR036182 RY45_18710 RY45_18715 IPR001753 Crotonase superfamily RY45_18715 IPR029045 ClpP/crotonase-like domain RY45_18720 IPR020206 Uncharacterised protein family, VP2110 RY45_18725 IPR001451 Bacterial transferase hexapeptide repeat RY45_18725 IPR011004 Trimeric LpxA-like RY45_18725 IPR018357 Hexapeptide transferase, conserved site RY45_18730 IPR014956 Putative ParB-like nuclease RY45_18730 IPR016932 Uncharacterised conserved protein UCP029669 RY45_18730 IPR036086 RY45_18730 RY45_18735 IPR000914 Bacterial extracellular solute-binding protein, family 5 RY45_18735 IPR030678 RY45_18735 RY45_18745 IPR025218 Domain of unknown function DUF4426 RY45_18750 IPR003746 Protein of unknown function DUF167 RY45_18750 IPR005228 Conserved hypothetical protein CHP00251 RY45_18750 IPR036591 RY45_18750 RY45_18755 IPR003425 Uncharacterised protein family Ycf19 RY45_18760 IPR000304 Pyrroline-5-carboxylate reductase RY45_18760 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like RY45_18760 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RY45_18760 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain RY45_18760 IPR036291 RY45_18760 RY45_18765 IPR001608 Alanine racemase, N-terminal RY45_18765 IPR011078 Uncharacterised protein family UPF0001 RY45_18765 IPR029066 PLP-binding barrel RY45_18770 IPR001482 Type II secretion system protein E RY45_18770 IPR003593 AAA+ ATPase domain RY45_18770 IPR006321 Pilus retraction protein PilT RY45_18770 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18775 IPR001482 Type II secretion system protein E RY45_18775 IPR006321 Pilus retraction protein PilT RY45_18775 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18780 IPR005583 Uncharacterised protein family UPF0246 RY45_18785 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site RY45_18785 IPR001650 Helicase, C-terminal RY45_18785 IPR011545 DEAD/DEAH box helicase domain RY45_18785 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_18785 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18785 IPR028621 ATP-dependent RNA helicase SrmB RY45_18790 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_18790 IPR007848 Methyltransferase small domain RY45_18790 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase RY45_18790 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_18795 IPR004685 Branched-chain amino acid transport system II carrier protein RY45_18800 IPR004685 Branched-chain amino acid transport system II carrier protein RY45_18810 IPR028051 Chemotaxis phosphatase CheX-like domain RY45_18810 IPR028976 CheC-like domain RY45_18820 IPR001269 tRNA-dihydrouridine synthase RY45_18820 IPR004653 tRNA-dihydrouridine synthase, TIM-barrel, YjbN RY45_18820 IPR013785 Aldolase-type TIM barrel RY45_18820 IPR018517 tRNA-dihydrouridine synthase, conserved site RY45_18830 IPR000119 Histone-like bacterial DNA-binding protein RY45_18830 IPR010992 Integration host factor (IHF)-like DNA-binding domain RY45_18830 IPR020816 Histone-like DNA-binding protein, conserved site RY45_18835 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ RY45_18835 IPR038309 RY45_18835 RY45_18840 IPR009875 PilZ domain RY45_18840 IPR027021 Cyclic di-GMP binding protein, PA4608 type RY45_18845 IPR003593 AAA+ ATPase domain RY45_18845 IPR004504 DNA repair protein RadA RY45_18845 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_18845 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_18845 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18850 IPR009875 PilZ domain RY45_18855 IPR000073 Alpha/beta hydrolase fold-1 RY45_18855 IPR029058 Alpha/Beta hydrolase fold RY45_18860 IPR023214 HAD-like domain RY45_18860 IPR036412 RY45_18860 RY45_18865 IPR019305 Uncharacterised protein family Smp RY45_18870 IPR000014 PAS domain RY45_18870 IPR000160 GGDEF domain RY45_18870 IPR001610 PAC motif RY45_18870 IPR003018 GAF domain RY45_18870 IPR013655 PAS fold-3 RY45_18870 IPR013656 PAS fold-4 RY45_18870 IPR013767 PAS fold RY45_18870 IPR029016 GAF domain-like RY45_18870 IPR029787 Nucleotide cyclase RY45_18870 IPR035965 RY45_18870 RY45_18875 IPR000845 Nucleoside phosphorylase domain RY45_18875 IPR004402 Purine nucleoside phosphorylase DeoD-type RY45_18875 IPR018016 Nucleoside phosphorylase, conserved site RY45_18875 IPR035994 RY45_18875 RY45_18880 IPR006124 Metalloenzyme RY45_18880 IPR010045 Phosphopentomutase RY45_18880 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_18880 IPR017850 Alkaline-phosphatase-like, core domain RY45_18880 IPR024052 Phosphopentomutase DeoB cap domain RY45_18885 IPR000053 Pyrimidine-nucleoside phosphorylase RY45_18885 IPR000312 Glycosyl transferase, family 3 RY45_18885 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal RY45_18885 IPR013465 Thymidine phosphorylase RY45_18885 IPR017459 Glycosyl transferase family 3, N-terminal domain RY45_18885 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site RY45_18885 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic RY45_18885 IPR035902 RY45_18885 RY45_18885 IPR036320 RY45_18885 RY45_18885 IPR036566 RY45_18885 RY45_18890 IPR002915 DeoC/FbaB/ lacD aldolase RY45_18890 IPR011343 Deoxyribose-phosphate aldolase RY45_18890 IPR013785 Aldolase-type TIM barrel RY45_18890 IPR023649 Deoxyribose-phosphate aldolase type II RY45_18895 IPR020017 XapX domain RY45_18900 IPR002668 Concentrative nucleoside transporter N-terminal domain RY45_18900 IPR011642 Nucleoside recognition Gate RY45_18900 IPR011657 Concentrative nucleoside transporter C-terminal domain RY45_18900 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial RY45_18905 IPR001130 TatD family RY45_18905 IPR018228 Deoxyribonuclease, TatD-related, conserved site RY45_18905 IPR032466 RY45_18905 RY45_18910 IPR012902 Prokaryotic N-terminal methylation site RY45_18915 IPR002792 TRAM domain RY45_18915 IPR010280 (Uracil-5)-methyltransferase family RY45_18915 IPR012340 Nucleic acid-binding, OB-fold RY45_18915 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_18915 IPR030390 RY45_18915 RY45_18915 IPR030391 RY45_18915 RY45_18920 IPR001905 Ammonium transporter RY45_18920 IPR018047 Ammonium transporter, conserved site RY45_18920 IPR024041 Ammonium transporter AmtB-like domain RY45_18920 IPR029020 Ammonium/urea transporter RY45_18925 IPR002104 Integrase, catalytic RY45_18925 IPR011010 DNA breaking-rejoining enzyme, catalytic core RY45_18925 IPR013762 Integrase-like, catalytic core RY45_18930 IPR026349 Conserved hypothetical protein CHP04255 RY45_18940 IPR001387 Cro/C1-type helix-turn-helix domain RY45_18940 IPR010982 Lambda repressor-like, DNA-binding domain RY45_18940 IPR015927 Peptidase S24/S26A/S26B/S26C RY45_18940 IPR036286 RY45_18940 RY45_18945 IPR010982 Lambda repressor-like, DNA-binding domain RY45_18955 IPR009679 Bacteriophage 186, CII RY45_18970 IPR001387 Cro/C1-type helix-turn-helix domain RY45_18970 IPR010982 Lambda repressor-like, DNA-binding domain RY45_19005 IPR006430 Phage portal protein, PBSX family RY45_19005 IPR006944 Bacteriophage/Gene transfer agent portal protein RY45_19005 IPR030935 RY45_19005 RY45_19015 IPR009228 Capsid scaffolding protein GpO RY45_19020 IPR006441 Bacteriophage P2, GpN, major capsid RY45_19025 IPR010270 Bacteriophage P2, GpM RY45_19030 IPR009225 Bacteriophage head completion protein GpL RY45_19035 IPR009678 Bacteriophage tail completion protein R RY45_19040 IPR019694 Bacteriophage HP1, Orf23 RY45_19045 IPR019708 Bacteriophage HP1, Orf24 RY45_19050 IPR000962 Zinc finger, DksA/TraR C4-type RY45_19050 IPR012783 Zinc finger, C4 DksA/TraR-type RY45_19050 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RY45_19055 IPR006481 Bacteriophage lambda, GpS, holin RY45_19060 IPR007921 CHAP domain RY45_19060 IPR013423 Conserved hypothetical protein CHP02594 RY45_19060 IPR038765 RY45_19060 RY45_19075 IPR024406 Protein of unknown function DUF2765 RY45_19080 IPR010090 Phage tail tape measure protein RY45_19085 IPR019697 Bacteriophage HP1, Orf28 RY45_19090 IPR006949 Baseplate assembly protein J-like, predicted RY45_19095 IPR006521 Tail protein I RY45_19100 IPR022225 Phage tail fibre protein RY45_19105 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly RY45_19130 IPR003812 Fido domain RY45_19130 IPR036597 RY45_19130 RY45_19140 IPR010432 RDD RY45_19145 IPR005495 Permease YjgP/YjgQ, predicted RY45_19145 IPR030923 RY45_19145 RY45_19150 IPR005495 Permease YjgP/YjgQ, predicted RY45_19150 IPR030922 RY45_19150 RY45_19155 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal RY45_19155 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal RY45_19155 IPR011356 Leucine aminopeptidase/peptidase B RY45_19155 IPR023042 Peptidase M17, leucine aminopeptidase RY45_19160 IPR007459 DNA polymerase III chi subunit, HolC RY45_19160 IPR036768 RY45_19160 RY45_19165 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RY45_19165 IPR002300 Aminoacyl-tRNA synthetase, class Ia RY45_19165 IPR002303 Valine-tRNA ligase RY45_19165 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RY45_19165 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RY45_19165 IPR010978 tRNA-binding arm RY45_19165 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RY45_19165 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_19165 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm RY45_19165 IPR037118 RY45_19165 RY45_19170 IPR000644 CBS domain RY45_19170 IPR002550 Domain of unknown function DUF21 RY45_19170 IPR005170 Transporter-associated domain RY45_19170 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_19170 IPR036318 RY45_19170 RY45_19175 IPR032816 RY45_19175 RY45_19180 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal RY45_19180 IPR012338 Beta-lactamase/transpeptidase-like RY45_19180 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A RY45_19215 IPR003751 Carbon storage regulator RY45_19215 IPR036107 RY45_19215 RY45_19220 IPR001048 Aspartate/glutamate/uridylate kinase RY45_19220 IPR001057 Glutamate/acetylglutamate kinase RY45_19220 IPR001341 Aspartate kinase domain RY45_19220 IPR002912 ACT domain RY45_19220 IPR005260 Aspartate kinase, monofunctional class RY45_19220 IPR018042 Aspartate kinase, conserved site RY45_19220 IPR027795 GATS-like ACT domain RY45_19220 IPR036393 RY45_19220 RY45_19225 IPR002318 Alanine-tRNA ligase, class IIc RY45_19225 IPR003156 DHHA1 domain RY45_19225 IPR009000 Translation protein, beta-barrel domain RY45_19225 IPR012947 Threonyl/alanyl tRNA synthetase, SAD RY45_19225 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain RY45_19225 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain RY45_19225 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal RY45_19225 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria RY45_19230 IPR003783 Regulatory protein RecX RY45_19230 IPR036388 RY45_19230 RY45_19235 IPR003593 AAA+ ATPase domain RY45_19235 IPR013765 DNA recombination and repair protein RecA RY45_19235 IPR020584 DNA recombination/repair protein RecA, conserved site RY45_19235 IPR023400 DNA recombination and repair protein RecA, C-terminal RY45_19235 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19240 IPR008136 CinA, C-terminal RY45_19240 IPR036653 RY45_19240 RY45_19245 IPR000432 DNA mismatch repair protein MutS, C-terminal RY45_19245 IPR005748 DNA mismatch repair protein MutS, type 1 RY45_19245 IPR007695 DNA mismatch repair protein MutS-like, N-terminal RY45_19245 IPR007696 DNA mismatch repair protein MutS, core RY45_19245 IPR007860 DNA mismatch repair protein MutS, connector domain RY45_19245 IPR007861 DNA mismatch repair protein MutS, clamp RY45_19245 IPR016151 DNA mismatch repair protein MutS, N-terminal RY45_19245 IPR017261 DNA mismatch repair protein Msh6 RY45_19245 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19245 IPR036187 RY45_19245 RY45_19245 IPR036678 RY45_19245 RY45_19250 IPR000060 BCCT transporter family RY45_19260 IPR000835 MarR-type HTH domain RY45_19260 IPR036388 RY45_19260 RY45_19260 IPR036390 RY45_19260 RY45_19265 IPR024445 Transposase, ISXO2-like RY45_19270 IPR007338 Protein of unknown function DUF416 RY45_19270 IPR023381 YP001051499.1-like domain RY45_19275 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RY45_19275 IPR036291 RY45_19275 RY45_19280 IPR007340 Opacity-associated protein A RY45_19280 IPR011055 Duplicated hybrid motif RY45_19280 IPR016047 Peptidase M23 RY45_19285 IPR032244 RY45_19285 RY45_19290 IPR011852 TRAP transporter solute receptor, TAXI family RY45_19295 IPR010319 Transglutaminase-like cysteine peptidase, predicted RY45_19300 IPR006127 Periplasmic solute binding protein family RY45_19300 IPR006128 Adhesion lipoprotein RY45_19305 IPR003439 ABC transporter-like RY45_19305 IPR003593 AAA+ ATPase domain RY45_19305 IPR017871 ABC transporter, conserved site RY45_19305 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19310 IPR001626 ABC-3 RY45_19310 IPR037294 RY45_19310 RY45_19315 IPR000847 Transcription regulator HTH, LysR RY45_19315 IPR005119 LysR, substrate-binding RY45_19315 IPR036388 RY45_19315 RY45_19315 IPR036390 RY45_19315 RY45_19320 IPR000620 Drug/metabolite transporter RY45_19325 IPR005122 Uracil-DNA glycosylase-like RY45_19325 IPR036895 RY45_19325 RY45_19330 IPR000620 Drug/metabolite transporter RY45_19330 IPR004626 RarD protein RY45_19340 IPR000305 GIY-YIG nuclease superfamily RY45_19340 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease RY45_19340 IPR035901 RY45_19340 RY45_19345 IPR014318 Phage shock protein, PspG RY45_19350 IPR007168 Phage shock protein, PspC, N-terminal RY45_19355 IPR007157 PspA/IM30 RY45_19355 IPR014319 Phage shock protein, PspA RY45_19360 IPR002123 Phospholipid/glycerol acyltransferase RY45_19360 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase RY45_19370 IPR003834 Cytochrome c assembly protein, transmembrane domain RY45_19370 IPR017937 Thioredoxin, conserved site RY45_19370 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RY45_19370 IPR036249 RY45_19370 RY45_19375 IPR012336 Thioredoxin-like fold RY45_19375 IPR017937 Thioredoxin, conserved site RY45_19375 IPR036249 RY45_19375 RY45_19380 IPR013740 Redoxin RY45_19380 IPR036249 RY45_19380 RY45_19385 IPR001623 DnaJ domain RY45_19385 IPR036869 RY45_19385 RY45_19415 IPR011701 Major facilitator superfamily RY45_19415 IPR036259 RY45_19415 RY45_19420 IPR000847 Transcription regulator HTH, LysR RY45_19420 IPR005119 LysR, substrate-binding RY45_19420 IPR036388 RY45_19420 RY45_19420 IPR036390 RY45_19420 RY45_19425 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal RY45_19425 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative RY45_19425 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel RY45_19425 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain RY45_19425 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta RY45_19425 IPR013760 DNA topoisomerase, type IIA-like domain RY45_19425 IPR035516 RY45_19425 RY45_19430 IPR001241 DNA topoisomerase, type IIA RY45_19430 IPR002288 DNA gyrase B subunit, C-terminal RY45_19430 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_19430 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative RY45_19430 IPR006171 Toprim domain RY45_19430 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 RY45_19430 IPR013759 DNA topoisomerase, type IIA, central domain RY45_19430 IPR013760 DNA topoisomerase, type IIA-like domain RY45_19430 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_19430 IPR018522 DNA topoisomerase, type IIA, conserved site RY45_19430 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_19430 IPR036890 RY45_19430 RY45_19435 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein RY45_19440 IPR006143 RND efflux pump, membrane fusion protein RY45_19440 IPR039562 RY45_19440 RY45_19445 IPR012451 Protein of unknown function DUF1656 RY45_19450 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V RY45_19450 IPR011057 Mss4-like RY45_19455 IPR000086 NUDIX hydrolase domain RY45_19455 IPR015797 NUDIX hydrolase domain-like RY45_19460 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA RY45_19460 IPR029058 Alpha/Beta hydrolase fold RY45_19465 IPR004843 Calcineurin-like phosphoesterase domain, apaH type RY45_19465 IPR013622 Calcineurin-like phosphoesterase C-terminal RY45_19465 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA RY45_19465 IPR029052 Metallo-dependent phosphatase-like RY45_19470 IPR009659 Protein of unknown function DUF1249 RY45_19475 IPR000086 NUDIX hydrolase domain RY45_19475 IPR004385 Nucleoside diphosphate pyrophosphatase RY45_19475 IPR015797 NUDIX hydrolase domain-like RY45_19475 IPR020084 NUDIX hydrolase, conserved site RY45_19480 IPR003423 Outer membrane efflux protein RY45_19480 IPR010130 Type I secretion outer membrane protein, TolC RY45_19485 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site RY45_19485 IPR004821 Cytidyltransferase-like domain RY45_19485 IPR011611 Carbohydrate kinase PfkB RY45_19485 IPR011913 RfaE bifunctional protein, domain I RY45_19485 IPR011914 RfaE bifunctional protein, domain II RY45_19485 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_19485 IPR023030 Bifunctional protein HldE RY45_19485 IPR029056 Ribokinase-like RY45_19490 IPR004960 Bacterial lipid A biosynthesis acyltransferase RY45_19490 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase RY45_19495 IPR006260 TonB, C-terminal RY45_19495 IPR037682 RY45_19495 RY45_19500 IPR023577 CYTH-like domain RY45_19500 IPR033469 RY45_19500 RY45_19505 IPR002727 Protein of unknown function DUF47 RY45_19505 IPR018445 Putitive phosphate transport regulator RY45_19505 IPR038078 RY45_19505 RY45_19510 IPR001204 Phosphate transporter RY45_19515 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RY45_19515 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain RY45_19515 IPR036754 RY45_19515 RY45_19520 IPR010856 Protein of unknown function DUF1479 RY45_19520 IPR027443 Isopenicillin N synthase-like RY45_19525 IPR000182 GNAT domain RY45_19525 IPR016181 Acyl-CoA N-acyltransferase RY45_19530 IPR001307 Thiosulphate sulfurtransferase, conserved site RY45_19530 IPR001763 Rhodanese-like domain RY45_19530 IPR036873 RY45_19530 RY45_19535 IPR003718 OsmC/Ohr family RY45_19535 IPR015946 K homology domain-like, alpha/beta RY45_19535 IPR036102 RY45_19535 RY45_19540 IPR000524 Transcription regulator HTH, GntR RY45_19540 IPR004839 Aminotransferase, class I/classII RY45_19540 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_19540 IPR015424 Pyridoxal phosphate-dependent transferase RY45_19540 IPR036388 RY45_19540 RY45_19540 IPR036390 RY45_19540 RY45_19545 IPR000847 Transcription regulator HTH, LysR RY45_19545 IPR005119 LysR, substrate-binding RY45_19545 IPR036388 RY45_19545 RY45_19545 IPR036390 RY45_19545 RY45_19550 IPR005538 LrgA/CidA family RY45_19555 IPR007300 CidB/LrgB family RY45_19570 IPR002646 Poly A polymerase, head domain RY45_19570 IPR003607 HD/PDEase domain RY45_19570 IPR006674 HD domain RY45_19570 IPR012006 tRNA nucleotidyltransferase, proteobacteria RY45_19570 IPR032828 RY45_19570 RY45_19575 IPR002477 Peptidoglycan binding-like RY45_19575 IPR003593 AAA+ ATPase domain RY45_19575 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19575 IPR036365 RY45_19575 RY45_19575 IPR036366 RY45_19575 RY45_19580 IPR032389 RY45_19580 RY45_19585 IPR000445 Helix-hairpin-helix motif RY45_19585 IPR003265 HhH-GPD domain RY45_19585 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif RY45_19585 IPR004035 Endonuclease III, iron-sulphur binding site RY45_19585 IPR004036 Endonuclease III-like, conserved site-2 RY45_19585 IPR005760 A/G-specific adenine glycosylase MutY RY45_19585 IPR011257 DNA glycosylase RY45_19585 IPR015797 NUDIX hydrolase domain-like RY45_19585 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RY45_19585 IPR029119 MutY, C-terminal RY45_19590 IPR007457 Fe(II) trafficking protein YggX RY45_19590 IPR036766 RY45_19590 RY45_19595 IPR000189 Prokaryotic transglycosylase, active site RY45_19595 IPR008258 Lytic transglycosylase-like SLT domain RY45_19595 IPR023346 Lysozyme-like domain RY45_19595 IPR024570 Murein transglycosylase-C, N-terminal RY45_19600 IPR005220 Viral OB-fold, YgiW RY45_19600 IPR036700 RY45_19600 RY45_19605 IPR001087 Lipase, GDSL RY45_19605 IPR008265 Lipase, GDSL, active site RY45_19605 IPR036514 RY45_19605 RY45_19610 IPR001638 Extracellular solute-binding protein, family 3 RY45_19615 IPR000498 Outer membrane protein, OmpA-like, transmembrane domain RY45_19615 IPR002368 Outer membrane protein, OmpA RY45_19615 IPR006664 Outer membrane protein, bacterial RY45_19615 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_19615 IPR006690 Outer membrane protein, OmpA-like, conserved site RY45_19615 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel RY45_19615 IPR036737 RY45_19615 RY45_19620 IPR005586 Protein of unknown function DUF330 RY45_19625 IPR003399 Mammalian cell entry-related RY45_19630 IPR005219 Conserved hypothetical protein CHP00155 RY45_19630 IPR007498 Paraquat-inducible protein A RY45_19635 IPR005001 Host factor Hfq RY45_19635 IPR010920 Like-Sm (LSM) domain RY45_19640 IPR006439 HAD hydrolase, subfamily IA RY45_19640 IPR010976 Beta-phosphoglucomutase hydrolase RY45_19640 IPR023198 Phosphoglycolate phosphatase, domain 2 RY45_19640 IPR023214 HAD-like domain RY45_19640 IPR036412 RY45_19640 RY45_19645 IPR013976 Metal-dependent hydrolase HDOD RY45_19650 IPR000160 GGDEF domain RY45_19650 IPR003018 GAF domain RY45_19650 IPR029016 GAF domain-like RY45_19650 IPR029787 Nucleotide cyclase RY45_19655 IPR002220 DapA-like RY45_19655 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA RY45_19655 IPR013785 Aldolase-type TIM barrel RY45_19655 IPR020624 Dihydrodipicolinate synthetase, conserved site RY45_19655 IPR020625 Dihydrodipicolinate synthetase, active site RY45_19660 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RY45_19660 IPR007848 Methyltransferase small domain RY45_19660 IPR013675 Methyltransferase small, N-terminal RY45_19660 IPR023543 rRNA small subunit methyltransferase C RY45_19660 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_19665 IPR005835 Nucleotidyl transferase RY45_19665 IPR005836 ADP-glucose pyrophosphorylase, conserved site RY45_19665 IPR011004 Trimeric LpxA-like RY45_19665 IPR011831 Glucose-1-phosphate adenylyltransferase RY45_19665 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial RY45_19665 IPR029044 Nucleotide-diphospho-sugar transferases RY45_19670 IPR001296 Glycosyl transferase, family 1 RY45_19670 IPR011835 Glycogen/starch synthase, ADP-glucose type RY45_19670 IPR013534 Starch synthase, catalytic domain RY45_19700 IPR019657 Late competence development protein ComFB RY45_19710 IPR004770 Na+/H+ antiporter NhaC RY45_19710 IPR018461 Na+/H+ antiporter, NhaC-like RY45_19715 IPR000847 Transcription regulator HTH, LysR RY45_19715 IPR005119 LysR, substrate-binding RY45_19715 IPR036388 RY45_19715 RY45_19715 IPR036390 RY45_19715 RY45_19720 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein RY45_19720 IPR006059 Bacterial extracellular solute-binding, family 1 RY45_19725 IPR003439 ABC transporter-like RY45_19725 IPR003593 AAA+ ATPase domain RY45_19725 IPR008995 Molybdate/tungstate binding, C-terminal RY45_19725 IPR013611 Transport-associated OB, type 2 RY45_19725 IPR017871 ABC transporter, conserved site RY45_19725 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19730 IPR000515 MetI-like domain RY45_19730 IPR035906 RY45_19730 RY45_19735 IPR000515 MetI-like domain RY45_19735 IPR035906 RY45_19735 RY45_19740 IPR015590 Aldehyde dehydrogenase domain RY45_19740 IPR016161 Aldehyde/histidinol dehydrogenase RY45_19740 IPR016162 Aldehyde dehydrogenase, N-terminal RY45_19740 IPR016163 Aldehyde dehydrogenase, C-terminal RY45_19740 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RY45_19750 IPR000620 Drug/metabolite transporter RY45_19755 IPR000485 AsnC-type HTH domain RY45_19755 IPR011008 Dimeric alpha-beta barrel RY45_19755 IPR019887 Transcription regulator AsnC-type, C-terminal RY45_19755 IPR019888 Transcription regulator AsnC-type RY45_19755 IPR036388 RY45_19755 RY45_19755 IPR036390 RY45_19755 RY45_19760 IPR001451 Bacterial transferase hexapeptide repeat RY45_19760 IPR011004 Trimeric LpxA-like RY45_19760 IPR018357 Hexapeptide transferase, conserved site RY45_19760 IPR024688 Maltose/galactoside acetyltransferase RY45_19765 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_19765 IPR012769 Trehalose-6-phosphate hydrolase RY45_19765 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_19765 IPR017853 Glycoside hydrolase, superfamily RY45_19765 IPR032091 RY45_19765 RY45_19770 IPR001996 Phosphotransferase system, IIB component, type 1 RY45_19770 IPR003352 Phosphotransferase system, EIIC RY45_19770 IPR011296 Phosphotransferase system, trehalose-specific IIBC component RY45_19770 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site RY45_19770 IPR036878 RY45_19770 RY45_19775 IPR000843 Transcription regulator HTH, LacI RY45_19775 IPR010982 Lambda repressor-like, DNA-binding domain RY45_19775 IPR012771 Trehalose operon repressor RY45_19775 IPR028082 Periplasmic binding protein-like I RY45_19780 IPR004776 Auxin efflux carrier RY45_19785 IPR006121 Heavy metal-associated domain, HMA RY45_19785 IPR017969 Heavy-metal-associated, conserved site RY45_19785 IPR036163 RY45_19785 RY45_19790 IPR004550 L-asparaginase, type II RY45_19790 IPR006034 Asparaginase/glutaminase RY45_19790 IPR020827 Asparaginase/glutaminase, active site 1 RY45_19790 IPR027473 L-asparaginase, C-terminal domain RY45_19790 IPR027474 L-asparaginase, N-terminal RY45_19790 IPR027475 Asparaginase/glutaminase, active site 2 RY45_19790 IPR036152 RY45_19790 RY45_19790 IPR037152 RY45_19790 RY45_19795 IPR004837 Sodium/calcium exchanger membrane region RY45_19800 IPR025982 Superinfection exclusion protein B RY45_19805 IPR004363 Methylglyoxal synthase RY45_19805 IPR011607 Methylglyoxal synthase-like domain RY45_19805 IPR018148 Methylglyoxal synthase, active site RY45_19805 IPR036914 RY45_19805 RY45_19810 IPR010281 Protein of unknown function DUF885 RY45_19815 IPR002024 Bacterioferritin RY45_19815 IPR008331 Ferritin/DPS protein domain RY45_19815 IPR009078 Ferritin-like superfamily RY45_19815 IPR012347 Ferritin-related RY45_19820 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_19825 IPR018772 Transcription activator HlyU RY45_19830 IPR000182 GNAT domain RY45_19830 IPR007807 Helicase domain RY45_19830 IPR013562 Domain of unknown function DUF1726 RY45_19830 IPR016181 Acyl-CoA N-acyltransferase RY45_19830 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA RY45_19830 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19830 IPR033442 RY45_19830 RY45_19830 IPR038321 RY45_19830 RY45_19835 IPR002347 Glucose/ribitol dehydrogenase RY45_19835 IPR036291 RY45_19835 RY45_19840 IPR001789 Signal transduction response regulator, receiver domain RY45_19840 IPR002545 CheW-like protein RY45_19840 IPR011006 CheY-like superfamily RY45_19840 IPR024181 Chemotaxis response regulator CheV RY45_19840 IPR036061 RY45_19840 RY45_19850 IPR012550 Protein of unknown function DUF1706 RY45_19850 IPR034660 RY45_19850 RY45_19860 IPR013099 Two pore domain potassium channel domain RY45_19870 IPR008727 PAAR motif RY45_19890 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RY45_19890 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RY45_19890 IPR037026 RY45_19890 RY45_19895 IPR008514 Type VI secretion system effector, Hcp RY45_19895 IPR036624 RY45_19895 RY45_19920 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY RY45_19925 IPR006156 Dihydroneopterin aldolase RY45_19925 IPR006157 Dihydroneopterin aldolase/epimerase domain RY45_19930 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK RY45_19930 IPR035907 RY45_19930 RY45_19935 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain RY45_19935 IPR036754 RY45_19935 RY45_19940 IPR004638 Drug resistance transporter EmrB/QacA subfamily RY45_19940 IPR011701 Major facilitator superfamily RY45_19940 IPR036259 RY45_19940 RY45_19945 IPR003495 CobW/HypB/UreG domain RY45_19945 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RY45_19945 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19945 IPR036627 RY45_19945 RY45_19950 IPR006094 FAD linked oxidase, N-terminal RY45_19950 IPR007173 D-arabinono-1,4-lactone oxidase RY45_19950 IPR016167 FAD-binding, type 2, subdomain 1 RY45_19950 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_19950 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RY45_19950 IPR036318 RY45_19950 RY45_19955 IPR001123 Lysine-type exporter protein (LYSE/YGGA) RY45_19960 IPR000847 Transcription regulator HTH, LysR RY45_19960 IPR005119 LysR, substrate-binding RY45_19960 IPR036388 RY45_19960 RY45_19960 IPR036390 RY45_19960 RY45_19965 IPR001633 EAL domain RY45_19965 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain RY45_19965 IPR035919 RY45_19965 RY45_19970 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha RY45_19970 IPR004406 Aconitase B, bacterial RY45_19970 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RY45_19970 IPR015929 Aconitase B, N-terminal, bacterial RY45_19970 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 RY45_19970 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 RY45_19970 IPR015933 Aconitase B, HEAT-like, bacterial RY45_19970 IPR018136 Aconitase family, 4Fe-4S cluster binding site RY45_19970 IPR036008 RY45_19970 RY45_19970 IPR036288 RY45_19970 RY45_19975 IPR002641 Patatin/Phospholipase A2-related RY45_19975 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_19995 IPR001100 RY45_19995 RY45_19995 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_19995 IPR006258 Dihydrolipoamide dehydrogenase RY45_19995 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RY45_19995 IPR016156 FAD/NAD-linked reductase, dimerisation domain RY45_19995 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_19995 IPR036188 RY45_19995 RY45_20000 IPR000089 Biotin/lipoyl attachment RY45_20000 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain RY45_20000 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RY45_20000 IPR004167 E3 binding RY45_20000 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex RY45_20000 IPR011053 Single hybrid motif RY45_20000 IPR023213 Chloramphenicol acetyltransferase-like domain RY45_20000 IPR036625 RY45_20000 RY45_20005 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type RY45_20005 IPR005474 Transketolase, N-terminal RY45_20005 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II RY45_20005 IPR029061 Thiamin diphosphate-binding fold RY45_20010 IPR000524 Transcription regulator HTH, GntR RY45_20010 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_20010 IPR011711 GntR, C-terminal RY45_20010 IPR036388 RY45_20010 RY45_20010 IPR036390 RY45_20010 RY45_20020 IPR001969 Aspartic peptidase, active site RY45_20020 IPR011969 Peptidase aspartic, CHP02281 RY45_20020 IPR021109 Aspartic peptidase domain RY45_20025 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal RY45_20025 IPR004393 Nicotinate-nucleotide pyrophosphorylase RY45_20025 IPR013785 Aldolase-type TIM barrel RY45_20025 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal RY45_20025 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD RY45_20025 IPR036068 RY45_20025 RY45_20025 IPR037128 RY45_20025 RY45_20030 IPR001082 Fimbrial protein pilin RY45_20030 IPR012902 Prokaryotic N-terminal methylation site RY45_20035 IPR001482 Type II secretion system protein E RY45_20035 IPR007831 General secretory system II, protein E, N-terminal RY45_20035 IPR013374 ATPase, type IV, pilus assembly, PilB RY45_20035 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20035 IPR037257 RY45_20035 RY45_20040 IPR001992 Type II secretion system conserved site RY45_20040 IPR003004 GspF/PilC family RY45_20040 IPR018076 Type II secretion system F domain RY45_20045 IPR000045 Prepilin type IV endopeptidase, peptidase domain RY45_20045 IPR010627 Peptidase A24A, N-terminal RY45_20045 IPR014032 Peptidase A24A, prepilin type IV, bacterial RY45_20050 IPR001977 Dephospho-CoA kinase RY45_20050 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20055 IPR009777 Cell division protein ZapD RY45_20055 IPR027462 Z ring-associated protein D, C-terminal domain RY45_20055 IPR036268 RY45_20055 RY45_20060 IPR005584 DNA gyrase inhibitor YacG RY45_20060 IPR013088 Zinc finger, NHR/GATA-type RY45_20065 IPR000086 NUDIX hydrolase domain RY45_20065 IPR003561 Mutator MutT RY45_20065 IPR015797 NUDIX hydrolase domain-like RY45_20065 IPR020084 NUDIX hydrolase, conserved site RY45_20065 IPR020476 NUDIX hydrolase RY45_20070 IPR011990 Tetratricopeptide-like helical domain RY45_20075 IPR000185 Protein translocase subunit SecA RY45_20075 IPR004027 SEC-C motif RY45_20075 IPR011115 SecA DEAD-like, N-terminal RY45_20075 IPR011116 SecA Wing/Scaffold RY45_20075 IPR011130 SecA preprotein, cross-linking domain RY45_20075 IPR020937 SecA conserved site RY45_20075 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20075 IPR036266 RY45_20075 RY45_20075 IPR036670 RY45_20075 RY45_20080 IPR011055 Duplicated hybrid motif RY45_20080 IPR016047 Peptidase M23 RY45_20085 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase RY45_20085 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal RY45_20085 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal RY45_20085 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_20090 IPR000158 Cell division protein FtsZ RY45_20090 IPR003008 Tubulin/FtsZ, GTPase domain RY45_20090 IPR008280 Tubulin/FtsZ, C-terminal RY45_20090 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RY45_20090 IPR020805 Cell division protein FtsZ, conserved site RY45_20090 IPR024757 Cell division protein FtsZ, C-terminal RY45_20090 IPR036525 RY45_20090 RY45_20090 IPR037103 RY45_20090 RY45_20095 IPR003494 SHS2 domain inserted in FtsA RY45_20095 IPR018181 Heat shock protein 70, conserved site RY45_20095 IPR020823 Cell division protein FtsA RY45_20100 IPR005548 Cell division protein FtsQ/DivIB RY45_20100 IPR013685 Polypeptide-transport-associated, FtsQ-type RY45_20100 IPR026579 Cell division protein FtsQ RY45_20105 IPR000713 Mur ligase, N-terminal RY45_20105 IPR004101 Mur ligase, C-terminal RY45_20105 IPR005758 UDP-N-acetylmuramate-alanine ligase RY45_20105 IPR013221 Mur ligase, central RY45_20105 IPR036565 RY45_20105 RY45_20105 IPR036615 RY45_20105 RY45_20110 IPR004276 Glycosyl transferase, family 28 RY45_20110 IPR006009 N-acetylglucosaminyltransferase, MurG RY45_20110 IPR007235 Glycosyl transferase, family 28, C-terminal RY45_20115 IPR001182 Cell cycle protein FtsW/RodA RY45_20115 IPR013437 Cell division protein FtsW RY45_20115 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site RY45_20120 IPR004101 Mur ligase, C-terminal RY45_20120 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase RY45_20120 IPR013221 Mur ligase, central RY45_20120 IPR036565 RY45_20120 RY45_20120 IPR036615 RY45_20120 RY45_20125 IPR000715 Glycosyl transferase, family 4 RY45_20125 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase RY45_20125 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site RY45_20130 IPR000713 Mur ligase, N-terminal RY45_20130 IPR004101 Mur ligase, C-terminal RY45_20130 IPR005863 UDP-MurNAc-pentapeptide synthetase RY45_20130 IPR013221 Mur ligase, central RY45_20130 IPR035911 RY45_20130 RY45_20130 IPR036565 RY45_20130 RY45_20130 IPR036615 RY45_20130 RY45_20135 IPR000713 Mur ligase, N-terminal RY45_20135 IPR004101 Mur ligase, C-terminal RY45_20135 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase RY45_20135 IPR013221 Mur ligase, central RY45_20135 IPR035911 RY45_20135 RY45_20135 IPR036565 RY45_20135 RY45_20135 IPR036615 RY45_20135 RY45_20140 IPR001460 Penicillin-binding protein, transpeptidase RY45_20140 IPR005311 Penicillin-binding protein, dimerisation domain RY45_20140 IPR012338 Beta-lactamase/transpeptidase-like RY45_20140 IPR036138 RY45_20140 RY45_20140 IPR037532 RY45_20140 RY45_20145 IPR011922 Cell division protein FtsL RY45_20150 IPR002903 Ribosomal RNA small subunit methyltransferase H RY45_20150 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain RY45_20150 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_20155 IPR003444 MraZ RY45_20155 IPR020603 MraZ domain RY45_20155 IPR037914 RY45_20155 RY45_20155 IPR038619 RY45_20155 RY45_20165 IPR008258 Lytic transglycosylase-like SLT domain RY45_20165 IPR023346 Lysozyme-like domain RY45_20170 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_20170 IPR025713 Motility protein B, N-terminal domain RY45_20170 IPR036737 RY45_20170 RY45_20175 IPR000540 Flagellar motor protein MotA, conserved site RY45_20175 IPR002898 MotA/TolQ/ExbB proton channel RY45_20175 IPR022522 Flagellar motor stator, MotA RY45_20180 IPR000943 RNA polymerase sigma-70 RY45_20180 IPR007624 RNA polymerase sigma-70 region 3 RY45_20180 IPR007627 RNA polymerase sigma-70 region 2 RY45_20180 IPR007630 RNA polymerase sigma-70 region 4 RY45_20180 IPR012845 RNA polymerase sigma factor, FliA/WhiG RY45_20180 IPR013324 RNA polymerase sigma factor, region 3/4 RY45_20180 IPR013325 RNA polymerase sigma factor, region 2 RY45_20180 IPR014284 RNA polymerase sigma-70 like domain RY45_20185 IPR005503 Flagellar basal body-associated protein FliL RY45_20190 IPR021136 Flagellar hook-length control protein-like, C-terminal RY45_20190 IPR038610 RY45_20190 RY45_20200 IPR003713 Flagellar protein FliS RY45_20200 IPR036584 RY45_20200 RY45_20205 IPR003481 Flagellar hook-associated protein 2, N-terminal RY45_20205 IPR010809 Flagellar hook-associated 2, C-terminal RY45_20205 IPR010810 Flagellin hook, IN motif RY45_20210 IPR001029 Flagellin, D0/D1 domain RY45_20210 IPR001492 Flagellin RY45_20220 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like RY45_20230 IPR001029 Flagellin, D0/D1 domain RY45_20230 IPR013384 Flagellar hook-associated protein 3 RY45_20235 IPR001444 Flagellar basal body rod protein, N-terminal RY45_20235 IPR002371 Flagellar hook-associated protein, FlgK RY45_20235 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_20240 IPR019301 Flagellar protein FlgJ, N-terminal RY45_20245 IPR001782 Flagellar P-ring protein RY45_20250 IPR000527 Flagellar L-ring protein RY45_20255 IPR001444 Flagellar basal body rod protein, N-terminal RY45_20255 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_20255 IPR012834 Flagellar basal-body rod FlgG RY45_20255 IPR019776 Flagellar basal body rod protein, conserved site RY45_20255 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RY45_20255 IPR037925 RY45_20255 RY45_20260 IPR001444 Flagellar basal body rod protein, N-terminal RY45_20260 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_20260 IPR012836 Flagellar basal-body rod FlgF RY45_20260 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RY45_20260 IPR037925 RY45_20260 RY45_20265 IPR001444 Flagellar basal body rod protein, N-terminal RY45_20265 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_20265 IPR011491 Flagellar basal body FlaE RY45_20265 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RY45_20265 IPR037058 RY45_20265 RY45_20265 IPR037925 RY45_20265 RY45_20270 IPR005648 Flagellar hook capping protein RY45_20270 IPR025963 FlgD Tudor-like domain RY45_20270 IPR025965 FlgD Ig-like domain RY45_20275 IPR001444 Flagellar basal body rod protein, N-terminal RY45_20275 IPR006299 Flagellar basal-body rod protein FlgC RY45_20275 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_20280 IPR006300 Flagellar basal-body rod protein FlgB RY45_20285 IPR013974 SAF domain RY45_20285 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RY45_20290 IPR007412 Anti-sigma-28 factor, FlgM RY45_20290 IPR031316 RY45_20290 RY45_20290 IPR035890 RY45_20290 RY45_20295 IPR007809 FlgN-like domain RY45_20295 IPR036679 RY45_20295 RY45_20300 IPR012823 Flagellar export FliJ RY45_20305 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RY45_20305 IPR005714 ATPase, type III secretion system, FliI/YscN RY45_20305 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RY45_20305 IPR020005 Flagellar export ATPase FliI, clade 1 RY45_20305 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20310 IPR000563 Flagellar assembly protein FliH RY45_20310 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RY45_20315 IPR000090 Flagellar motor switch protein FliG RY45_20315 IPR011002 Flagellar motor switch protein FliG, alpha-helical RY45_20315 IPR023087 RY45_20315 RY45_20315 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RY45_20315 IPR032779 RY45_20315 RY45_20320 IPR000067 Flagellar M-ring protein FliF RY45_20320 IPR006182 Secretory protein YscJ/FliF RY45_20320 IPR013556 Flagellar M-ring C-terminal RY45_20325 IPR001624 Flagellar hook-basal body complex protein FliE RY45_20330 IPR001789 Signal transduction response regulator, receiver domain RY45_20330 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_20330 IPR002197 DNA binding HTH domain, Fis-type RY45_20330 IPR003593 AAA+ ATPase domain RY45_20330 IPR009057 Homeodomain-like RY45_20330 IPR011006 CheY-like superfamily RY45_20330 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_20330 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_20330 IPR025944 Sigma-54 interaction domain, conserved site RY45_20330 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20335 IPR001712 Type III secretion system FHIPEP RY45_20335 IPR006301 Flagellar biosynthesis protein FlhA RY45_20335 IPR025505 FHIPEP conserved site RY45_20340 IPR006135 Type III secretion system substrate exporter RY45_20340 IPR006136 Type III exporter system, flagellar biosynthetic protein FlhB RY45_20340 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_20345 IPR002010 Type III secretion system inner membrane R protein RY45_20345 IPR006303 Flagellar biosynthesis protein FliR RY45_20350 IPR002191 Bacterial export protein family 3 RY45_20355 IPR005837 Flagellar transport protein FliP RY45_20355 IPR005838 Type III secretion system inner membrane P protein RY45_20360 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb RY45_20360 IPR001543 Surface presentation of antigen (SpoA) RY45_20360 IPR012826 Flagellar motor switch FliN RY45_20360 IPR036429 RY45_20360 RY45_20365 IPR001543 Surface presentation of antigen (SpoA) RY45_20365 IPR036429 RY45_20365 RY45_20370 IPR000878 Tetrapyrrole methylase RY45_20370 IPR008189 rRNA small subunit methyltransferase I RY45_20370 IPR014776 Tetrapyrrole methylase, subdomain 2 RY45_20370 IPR014777 Tetrapyrrole methylase, subdomain 1 RY45_20370 IPR018063 SAM-dependent methyltransferase RsmI, conserved site RY45_20370 IPR035996 RY45_20370 RY45_20375 IPR007443 Penicillin-binding protein activator LpoA RY45_20375 IPR011990 Tetratricopeptide-like helical domain RY45_20375 IPR028082 Periplasmic binding protein-like I RY45_20380 IPR003509 Uncharacterised protein family UPF0102 RY45_20380 IPR011335 Restriction endonuclease type II-like RY45_20380 IPR011856 tRNA endonuclease-like domain RY45_20385 IPR001347 Sugar isomerase (SIS) RY45_20390 IPR007055 BON domain RY45_20390 IPR014004 Transport-associated and nodulation domain, bacteria RY45_20395 IPR007481 Stringent starvation protein B RY45_20395 IPR036760 RY45_20395 RY45_20400 IPR004045 Glutathione S-transferase, N-terminal RY45_20400 IPR004046 Glutathione S-transferase, C-terminal RY45_20400 IPR036249 RY45_20400 RY45_20400 IPR036282 RY45_20400 RY45_20405 IPR002326 Cytochrome c1 RY45_20405 IPR036909 RY45_20405 RY45_20410 IPR005797 Cytochrome b/b6, N-terminal RY45_20410 IPR005798 Cytochrome b/b6, C-terminal RY45_20410 IPR016174 Di-haem cytochrome, transmembrane RY45_20410 IPR027387 Cytochrome b/b6-like domain RY45_20410 IPR030689 RY45_20410 RY45_20410 IPR036150 RY45_20410 RY45_20415 IPR005805 Rieske iron-sulphur protein, C-terminal RY45_20415 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit RY45_20415 IPR017941 Rieske [2Fe-2S] iron-sulphur domain RY45_20415 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal RY45_20415 IPR036922 RY45_20415 RY45_20420 IPR000754 Ribosomal protein S9 RY45_20420 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_20420 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_20420 IPR020574 Ribosomal protein S9, conserved site RY45_20420 IPR023035 Ribosomal protein S9, bacterial/plastid RY45_20425 IPR005822 Ribosomal protein L13 RY45_20425 IPR005823 Ribosomal protein L13, bacterial-type RY45_20425 IPR023563 Ribosomal protein L13, conserved site RY45_20425 IPR036899 RY45_20425 RY45_20430 IPR005654 ATPase, AFG1-like RY45_20430 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20430 IPR030870 RY45_20430 RY45_20435 IPR009386 Protein of unknown function DUF1043 RY45_20435 IPR035440 RY45_20435 RY45_20440 IPR001478 PDZ domain RY45_20440 IPR001940 Peptidase S1C RY45_20440 IPR009003 Trypsin-like cysteine/serine peptidase domain RY45_20440 IPR011782 Peptidase S1C, Do RY45_20440 IPR036034 RY45_20440 RY45_20445 IPR001478 PDZ domain RY45_20445 IPR001940 Peptidase S1C RY45_20445 IPR009003 Trypsin-like cysteine/serine peptidase domain RY45_20445 IPR011783 Peptidase S1C, DegS RY45_20445 IPR036034 RY45_20445 RY45_20450 IPR020044 PRD domain protein, EF0829/AHA3910 RY45_20450 IPR036634 RY45_20450 RY45_20455 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 RY45_20460 IPR020037 Protein of unknown function DUF4312 RY45_20465 IPR020042 Protein of unknown function DUF4311 RY45_20470 IPR025456 Protein of unknown function DUF4310 RY45_20475 IPR006680 Amidohydrolase 1 RY45_20475 IPR011059 Metal-dependent hydrolase, composite domain RY45_20475 IPR020043 Amidohydrolase EF0837/AHA3915, putative RY45_20475 IPR032466 RY45_20475 RY45_20480 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like RY45_20480 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_20480 IPR015424 Pyridoxal phosphate-dependent transferase RY45_20480 IPR018319 L-seryl-tRNA selenium transferase-like RY45_20485 IPR010763 Protein of unknown function DUF1341 RY45_20485 IPR013785 Aldolase-type TIM barrel RY45_20490 IPR002178 PTS EIIA type-2 domain RY45_20490 IPR007737 Mga helix-turn-helix domain RY45_20490 IPR011608 PRD domain RY45_20490 IPR013196 Helix-turn-helix, type 11 RY45_20490 IPR016152 Phosphotransferase/anion transporter RY45_20490 IPR036388 RY45_20490 RY45_20490 IPR036390 RY45_20490 RY45_20490 IPR036634 RY45_20490 RY45_20495 IPR000032 Phosphocarrier HPr protein-like RY45_20495 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RY45_20495 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RY45_20495 IPR035895 RY45_20495 RY45_20500 IPR005337 ATPase, P-loop-containing RY45_20500 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20505 IPR002178 PTS EIIA type-2 domain RY45_20505 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN RY45_20505 IPR016152 Phosphotransferase/anion transporter RY45_20510 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein RY45_20510 IPR036567 RY45_20510 RY45_20515 IPR000394 RNA polymerase sigma factor 54 RY45_20515 IPR007046 RNA polymerase sigma factor 54, core-binding RY45_20515 IPR007634 RNA polymerase sigma factor 54, DNA-binding RY45_20515 IPR038709 RY45_20515 RY45_20520 IPR003439 ABC transporter-like RY45_20520 IPR003593 AAA+ ATPase domain RY45_20520 IPR017871 ABC transporter, conserved site RY45_20520 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20520 IPR030921 RY45_20520 RY45_20520 IPR032823 RY45_20520 RY45_20525 IPR005653 Organic solvent tolerance-like, N-terminal RY45_20525 IPR014340 Lipopolysaccharide assembly, LptA RY45_20530 IPR010664 Lipopolysaccharide assembly, LptC-related RY45_20530 IPR026265 Lipopolysaccharide export system protein LptC RY45_20535 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase RY45_20535 IPR023214 HAD-like domain RY45_20535 IPR036412 RY45_20535 RY45_20540 IPR000644 CBS domain RY45_20540 IPR001347 Sugar isomerase (SIS) RY45_20540 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type RY45_20545 IPR003439 ABC transporter-like RY45_20545 IPR003593 AAA+ ATPase domain RY45_20545 IPR017871 ABC transporter, conserved site RY45_20545 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20550 IPR003453 Permease domain RY45_20550 IPR030802 RY45_20550 RY45_20555 IPR003399 Mammalian cell entry-related RY45_20555 IPR030970 RY45_20555 RY45_20560 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RY45_20565 IPR002645 STAS domain RY45_20565 IPR036513 RY45_20565 RY45_20570 IPR002634 BolA protein RY45_20570 IPR036065 RY45_20570 RY45_20575 IPR001986 Enolpyruvate transferase domain RY45_20575 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase RY45_20575 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RY45_20575 IPR036968 RY45_20575 RY45_20580 IPR002510 TldD/PmbA RY45_20580 IPR035068 RY45_20580 RY45_20580 IPR036059 RY45_20580 RY45_20585 IPR006839 Ribosome-associated, YjgA RY45_20585 IPR023153 PSPTO4464-like domain RY45_20590 IPR001264 Glycosyl transferase, family 51 RY45_20590 IPR012338 Beta-lactamase/transpeptidase-like RY45_20590 IPR023346 Lysozyme-like domain RY45_20590 IPR036950 RY45_20590 RY45_20595 IPR007458 Protein of unknown function DUF496 RY45_20620 IPR010266 NnrS RY45_20625 IPR001387 Cro/C1-type helix-turn-helix domain RY45_20625 IPR010982 Lambda repressor-like, DNA-binding domain RY45_20625 IPR011051 RmlC-like cupin domain RY45_20625 IPR013096 Cupin 2, conserved barrel RY45_20625 IPR014710 RmlC-like jelly roll fold RY45_20630 IPR004711 Benzoate transporter RY45_20635 IPR021452 Protein of unknown function DUF3103 RY45_20640 IPR003171 Methylenetetrahydrofolate reductase RY45_20640 IPR004620 5,10-methylenetetrahydrofolate reductase RY45_20640 IPR029041 FAD-linked oxidoreductase-like RY45_20645 IPR000182 GNAT domain RY45_20645 IPR016181 Acyl-CoA N-acyltransferase RY45_20650 IPR006059 Bacterial extracellular solute-binding, family 1 RY45_20650 IPR006061 Bacterial extracellular solute-binding family 1, conserved site RY45_20655 IPR003660 HAMP linker domain RY45_20655 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_20655 IPR024478 4HB MCP domain RY45_20660 IPR000758 Virulence-related outer membrane protein RY45_20660 IPR005618 Outer membrane protein, OmpW RY45_20660 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel RY45_20665 IPR000160 GGDEF domain RY45_20665 IPR007892 CHASE4 RY45_20665 IPR029787 Nucleotide cyclase RY45_20670 IPR003439 ABC transporter-like RY45_20670 IPR004602 UvrABC system subunit A RY45_20670 IPR017871 ABC transporter, conserved site RY45_20670 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20675 IPR000792 Transcription regulator LuxR, C-terminal RY45_20675 IPR016032 Signal transduction response regulator, C-terminal effector RY45_20675 IPR036388 RY45_20675 RY45_20680 IPR000424 Primosome PriB/single-strand DNA-binding RY45_20680 IPR011344 Single-stranded DNA-binding protein RY45_20680 IPR012340 Nucleic acid-binding, OB-fold RY45_20685 IPR001638 Extracellular solute-binding protein, family 3 RY45_20690 IPR002524 Cation efflux protein RY45_20690 IPR027469 Cation efflux protein transmembrane domain RY45_20690 IPR027470 Cation efflux protein cytoplasmic domain RY45_20690 IPR036837 RY45_20690 RY45_20695 IPR020317 Uncharacterised protein family YjbD RY45_20700 IPR002059 Cold-shock protein, DNA-binding RY45_20700 IPR011129 Cold shock protein RY45_20700 IPR012156 Cold shock, CspA RY45_20700 IPR012340 Nucleic acid-binding, OB-fold RY45_20700 IPR019844 Cold-shock conserved site RY45_20710 IPR000531 TonB-dependent receptor, beta-barrel RY45_20710 IPR012910 TonB-dependent receptor, plug RY45_20710 IPR036942 RY45_20710 RY45_20710 IPR037066 RY45_20710 RY45_20715 IPR000160 GGDEF domain RY45_20715 IPR001638 Extracellular solute-binding protein, family 3 RY45_20715 IPR029787 Nucleotide cyclase RY45_20720 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_20720 IPR003660 HAMP linker domain RY45_20720 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_20720 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_20720 IPR036097 RY45_20720 RY45_20720 IPR036890 RY45_20720 RY45_20725 IPR001789 Signal transduction response regulator, receiver domain RY45_20725 IPR001867 Signal transduction response regulator, C-terminal RY45_20725 IPR011006 CheY-like superfamily RY45_20725 IPR016032 Signal transduction response regulator, C-terminal effector RY45_20725 IPR036388 RY45_20725 RY45_20750 IPR000014 PAS domain RY45_20750 IPR000160 GGDEF domain RY45_20750 IPR013655 PAS fold-3 RY45_20750 IPR029787 Nucleotide cyclase RY45_20750 IPR035965 RY45_20750 RY45_20755 IPR003313 AraC-type arabinose-binding/dimerisation domain RY45_20755 IPR009057 Homeodomain-like RY45_20755 IPR018060 DNA binding HTH domain, AraC-type RY45_20755 IPR018062 HTH domain AraC-type, conserved site RY45_20755 IPR020449 Transcription regulator HTH, AraC- type RY45_20755 IPR037923 RY45_20755 RY45_20760 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_20760 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_20770 IPR006344 Exodeoxyribonuclease V, alpha subunit RY45_20770 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20770 IPR027785 UvrD-like helicase C-terminal domain RY45_20775 IPR004586 Exodeoxyribonuclease V, beta subunit RY45_20775 IPR011335 Restriction endonuclease type II-like RY45_20775 IPR011604 Exonuclease, phage-type/RecB, C-terminal RY45_20775 IPR014017 DNA helicase, UvrD-like, C-terminal RY45_20775 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20775 IPR034739 RY45_20775 RY45_20775 IPR038726 RY45_20775 RY45_20780 IPR006697 Exodeoxyribonuclease V, gamma subunit RY45_20780 IPR011335 Restriction endonuclease type II-like RY45_20780 IPR013986 DExx box DNA helicase domain RY45_20780 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20785 IPR032808 RY45_20785 RY45_20790 IPR003829 Pirin, N-terminal domain RY45_20790 IPR011051 RmlC-like cupin domain RY45_20790 IPR012093 Pirin RY45_20790 IPR014710 RmlC-like jelly roll fold RY45_20800 IPR000847 Transcription regulator HTH, LysR RY45_20800 IPR005119 LysR, substrate-binding RY45_20800 IPR036388 RY45_20800 RY45_20800 IPR036390 RY45_20800 RY45_20805 IPR001387 Cro/C1-type helix-turn-helix domain RY45_20805 IPR010982 Lambda repressor-like, DNA-binding domain RY45_20810 IPR000524 Transcription regulator HTH, GntR RY45_20810 IPR011663 UbiC transcription regulator-associated RY45_20810 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RY45_20810 IPR036388 RY45_20810 RY45_20810 IPR036390 RY45_20810 RY45_20820 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase RY45_20820 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha RY45_20820 IPR017850 Alkaline-phosphatase-like, core domain RY45_20825 IPR000515 MetI-like domain RY45_20825 IPR035906 RY45_20825 RY45_20830 IPR000515 MetI-like domain RY45_20830 IPR035906 RY45_20830 RY45_20835 IPR003439 ABC transporter-like RY45_20835 IPR003593 AAA+ ATPase domain RY45_20835 IPR008995 Molybdate/tungstate binding, C-terminal RY45_20835 IPR013611 Transport-associated OB, type 2 RY45_20835 IPR017871 ABC transporter, conserved site RY45_20835 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20840 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial RY45_20840 IPR023214 HAD-like domain RY45_20840 IPR036412 RY45_20840 RY45_20845 IPR000160 GGDEF domain RY45_20845 IPR029151 Periplasmic sensor domain-like RY45_20845 IPR029787 Nucleotide cyclase RY45_20845 IPR033479 RY45_20845 RY45_20850 IPR018706 Protein of unknown function DUF2214, membrane RY45_20855 IPR000620 Drug/metabolite transporter RY45_20860 IPR009057 Homeodomain-like RY45_20860 IPR010499 Bacterial transcription activator, effector binding RY45_20860 IPR011256 Regulatory factor, effector binding domain RY45_20860 IPR018060 DNA binding HTH domain, AraC-type RY45_20860 IPR018062 HTH domain AraC-type, conserved site RY45_20860 IPR020449 Transcription regulator HTH, AraC- type RY45_20860 IPR029442 GyrI-like small molecule binding domain RY45_20865 IPR000182 GNAT domain RY45_20865 IPR016181 Acyl-CoA N-acyltransferase RY45_20870 IPR002226 Catalase haem-binding site RY45_20870 IPR010582 Catalase immune-responsive domain RY45_20870 IPR011614 Catalase core domain RY45_20870 IPR018028 Catalase, mono-functional, haem-containing RY45_20870 IPR020835 Catalase-like domain RY45_20870 IPR024708 Catalase active site RY45_20870 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 RY45_20870 IPR037060 RY45_20870 RY45_20875 IPR009971 Protein of unknown function DUF1496 RY45_20885 IPR001638 Extracellular solute-binding protein, family 3 RY45_20895 IPR000086 NUDIX hydrolase domain RY45_20895 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_20895 IPR015797 NUDIX hydrolase domain-like RY45_20895 IPR020084 NUDIX hydrolase, conserved site RY45_20895 IPR020476 NUDIX hydrolase RY45_20895 IPR033138 RY45_20895 RY45_20895 IPR036938 RY45_20895 RY45_20900 IPR002549 Uncharacterised protein family UPF0118 RY45_20915 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type RY45_20915 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_20920 IPR000847 Transcription regulator HTH, LysR RY45_20920 IPR005119 LysR, substrate-binding RY45_20920 IPR036388 RY45_20920 RY45_20920 IPR036390 RY45_20920 RY45_20925 IPR000014 PAS domain RY45_20925 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_20925 IPR002197 DNA binding HTH domain, Fis-type RY45_20925 IPR009057 Homeodomain-like RY45_20925 IPR013767 PAS fold RY45_20925 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20925 IPR029016 GAF domain-like RY45_20925 IPR035965 RY45_20925 RY45_20930 IPR001670 Alcohol dehydrogenase, iron-type RY45_20930 IPR016205 Glycerol dehydrogenase RY45_20930 IPR018211 Alcohol dehydrogenase, iron-type, conserved site RY45_20935 IPR000032 Phosphocarrier HPr protein-like RY45_20935 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RY45_20935 IPR004701 Phosphotransferase system, mannose-type IIA component RY45_20935 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain RY45_20935 IPR035895 RY45_20935 RY45_20935 IPR036662 RY45_20935 RY45_20940 IPR004007 DhaL domain RY45_20940 IPR012737 Dihydroxyacetone kinase, subunit L RY45_20940 IPR036117 RY45_20940 RY45_20945 IPR004006 Dak kinase RY45_20945 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 RY45_20950 IPR024445 Transposase, ISXO2-like RY45_20955 IPR006043 Xanthine/uracil/vitamin C permease RY45_20960 IPR011051 RmlC-like cupin domain RY45_20960 IPR013096 Cupin 2, conserved barrel RY45_20960 IPR014710 RmlC-like jelly roll fold RY45_20990 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase RY45_20990 IPR006543 Histidinol-phosphate phosphatase RY45_20990 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RY45_20990 IPR023214 HAD-like domain RY45_20990 IPR036412 RY45_20990 RY45_20995 IPR000795 Elongation factor, GTP-binding domain RY45_20995 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RY45_20995 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 RY45_20995 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle RY45_20995 IPR005225 Small GTP-binding protein domain RY45_20995 IPR009000 Translation protein, beta-barrel domain RY45_20995 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RY45_20995 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20995 IPR031157 RY45_20995 RY45_21005 IPR000235 Ribosomal protein S5/S7 RY45_21005 IPR005717 Ribosomal protein S7, bacterial/organellar-type RY45_21005 IPR020606 Ribosomal protein S7, conserved site RY45_21005 IPR023798 Ribosomal protein S7 domain RY45_21005 IPR036823 RY45_21005 RY45_21015 IPR007215 Sulphur relay, TusB/DsrH RY45_21015 IPR027396 DsrEFH-like RY45_21020 IPR003787 Sulphur relay, DsrE/F-like protein RY45_21020 IPR017462 Sulphur relay, TusC/DsrF RY45_21020 IPR027396 DsrEFH-like RY45_21025 IPR003787 Sulphur relay, DsrE/F-like protein RY45_21025 IPR017463 Sulphur relay, TusD/DsrE RY45_21025 IPR027396 DsrEFH-like RY45_21030 IPR006056 Enamine/imine deaminase YjgF-like RY45_21030 IPR006175 YjgF/Yer057p/UK114 family RY45_21030 IPR035959 RY45_21030 RY45_21035 IPR013559 YheO-like RY45_21035 IPR039445 RY45_21035 RY45_21040 IPR000722 RNA polymerase, alpha subunit RY45_21040 IPR006592 RNA polymerase, N-terminal RY45_21040 IPR007066 RNA polymerase Rpb1, domain 3 RY45_21040 IPR007080 RNA polymerase Rpb1, domain 1 RY45_21040 IPR007081 RNA polymerase Rpb1, domain 5 RY45_21040 IPR007083 RNA polymerase Rpb1, domain 4 RY45_21040 IPR012754 DNA-directed RNA polymerase, subunit beta-prime RY45_21040 IPR038120 RY45_21040 RY45_21045 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 RY45_21045 IPR007121 RNA polymerase, beta subunit, conserved site RY45_21045 IPR007641 RNA polymerase Rpb2, domain 7 RY45_21045 IPR007642 RNA polymerase Rpb2, domain 2 RY45_21045 IPR007644 RNA polymerase, beta subunit, protrusion RY45_21045 IPR007645 RNA polymerase Rpb2, domain 3 RY45_21045 IPR010243 DNA-directed RNA polymerase, beta subunit RY45_21045 IPR014724 RNA polymerase Rpb2, OB-fold RY45_21045 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain RY45_21045 IPR037033 RY45_21045 RY45_21045 IPR037034 RY45_21045 RY45_21050 IPR000206 Ribosomal protein L7/L12 RY45_21050 IPR008932 Ribosomal protein L7/L12, oligomerisation RY45_21050 IPR013823 Ribosomal protein L7/L12, C-terminal RY45_21050 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RY45_21050 IPR036235 RY45_21050 RY45_21055 IPR001790 Ribosomal protein L10/acidic P0 RY45_21055 IPR002363 Ribosomal protein L10, eubacterial, conserved site RY45_21055 IPR022973 Ribosomal protein L10 RY45_21060 IPR002143 Ribosomal protein L1 RY45_21060 IPR005878 Ribosomal protein L1, bacterial-type RY45_21060 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RY45_21060 IPR023673 Ribosomal protein L1, conserved site RY45_21060 IPR023674 Ribosomal protein L1-like RY45_21060 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RY45_21065 IPR000911 Ribosomal protein L11/L12 RY45_21065 IPR006519 Ribosomal protein L11, bacterial-type RY45_21065 IPR020783 Ribosomal protein L11, C-terminal RY45_21065 IPR020784 Ribosomal protein L11, N-terminal RY45_21065 IPR020785 Ribosomal protein L11, conserved site RY45_21065 IPR036769 RY45_21065 RY45_21065 IPR036796 RY45_21065 RY45_21070 IPR001062 Transcription antitermination protein, NusG RY45_21070 IPR005824 KOW RY45_21070 IPR006645 NusG, N-terminal RY45_21070 IPR008991 Translation protein SH3-like domain RY45_21070 IPR014722 Ribosomal protein L2 domain 2 RY45_21070 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RY45_21070 IPR036735 RY45_21070 RY45_21075 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit RY45_21075 IPR005807 SecE subunit of protein translocation complex RY45_21075 IPR038379 RY45_21075 RY45_21085 IPR000795 Elongation factor, GTP-binding domain RY45_21085 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RY45_21085 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 RY45_21085 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle RY45_21085 IPR005225 Small GTP-binding protein domain RY45_21085 IPR009000 Translation protein, beta-barrel domain RY45_21085 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RY45_21085 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21085 IPR031157 RY45_21085 RY45_21100 IPR004566 Bacterial pantothenate kinase RY45_21100 IPR006083 Phosphoribulokinase/uridine kinase RY45_21100 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21105 IPR003142 Biotin protein ligase, C-terminal RY45_21105 IPR004143 Biotin/lipoate A/B protein ligase RY45_21105 IPR004408 Biotin--acetyl-CoA-carboxylase ligase RY45_21105 IPR008988 Transcriptional repressor, C-terminal RY45_21105 IPR013196 Helix-turn-helix, type 11 RY45_21105 IPR030855 RY45_21105 RY45_21105 IPR036388 RY45_21105 RY45_21105 IPR036390 RY45_21105 RY45_21110 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase RY45_21110 IPR006094 FAD linked oxidase, N-terminal RY45_21110 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal RY45_21110 IPR016167 FAD-binding, type 2, subdomain 1 RY45_21110 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 RY45_21110 IPR036318 RY45_21110 RY45_21110 IPR036635 RY45_21110 RY45_21115 IPR003148 Regulator of K+ conductance, N-terminal RY45_21115 IPR036291 RY45_21115 RY45_21115 IPR036721 RY45_21115 RY45_21120 IPR003445 Cation transporter RY45_21120 IPR004772 Potassium uptake protein TrkH family RY45_21125 IPR003601 DNA topoisomerase, type IA, domain 2 RY45_21125 IPR003602 DNA topoisomerase, type IA, DNA-binding domain RY45_21125 IPR005738 DNA topoisomerase III RY45_21125 IPR006171 Toprim domain RY45_21125 IPR013497 DNA topoisomerase, type IA, central RY45_21125 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RY45_21125 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RY45_21125 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RY45_21125 IPR023405 DNA topoisomerase, type IA, core domain RY45_21125 IPR023406 DNA topoisomerase, type IA, active site RY45_21130 IPR005126 NapC/NirT cytochrome c, N-terminal RY45_21130 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK RY45_21130 IPR036280 RY45_21130 RY45_21130 IPR036909 RY45_21130 RY45_21130 IPR038266 RY45_21130 RY45_21135 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site RY45_21135 IPR006656 Molybdopterin oxidoreductase RY45_21135 IPR006657 Molydopterin dinucleotide-binding domain RY45_21135 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase RY45_21135 IPR009010 Aspartate decarboxylase-like domain RY45_21135 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_21145 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_21145 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_21145 IPR036890 RY45_21145 RY45_21150 IPR001789 Signal transduction response regulator, receiver domain RY45_21150 IPR001867 Signal transduction response regulator, C-terminal RY45_21150 IPR011006 CheY-like superfamily RY45_21150 IPR036388 RY45_21150 RY45_21160 IPR025711 PepSY domain RY45_21165 IPR013130 Ferric reductase transmembrane component-like domain RY45_21165 IPR022837 Sulphoxide reductase heme-binding subunit YedZ RY45_21170 IPR000572 Oxidoreductase, molybdopterin-binding domain RY45_21170 IPR022867 Sulphoxide reductase catalytic subunit YedY RY45_21170 IPR036374 RY45_21170 RY45_21175 IPR009476 Protein of unknown function DUF1097 RY45_21180 IPR001789 Signal transduction response regulator, receiver domain RY45_21180 IPR002078 RNA polymerase sigma factor 54 interaction domain RY45_21180 IPR003593 AAA+ ATPase domain RY45_21180 IPR009057 Homeodomain-like RY45_21180 IPR011006 CheY-like superfamily RY45_21180 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21190 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_21190 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_21190 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_21190 IPR036097 RY45_21190 RY45_21190 IPR036890 RY45_21190 RY45_21195 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK RY45_21195 IPR035907 RY45_21195 RY45_21200 IPR002347 Glucose/ribitol dehydrogenase RY45_21200 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_21200 IPR036291 RY45_21200 RY45_21205 IPR000644 CBS domain RY45_21210 IPR019275 Protein of unknown function DUF2301 RY45_21215 IPR001638 Extracellular solute-binding protein, family 3 RY45_21220 IPR000485 AsnC-type HTH domain RY45_21220 IPR011008 Dimeric alpha-beta barrel RY45_21220 IPR019887 Transcription regulator AsnC-type, C-terminal RY45_21220 IPR019888 Transcription regulator AsnC-type RY45_21220 IPR036388 RY45_21220 RY45_21220 IPR036390 RY45_21220 RY45_21225 IPR004618 Aspartate--ammonia ligase RY45_21230 IPR001279 Beta-lactamase-like RY45_21230 IPR036866 RY45_21230 RY45_21235 IPR001270 ClpA/B family RY45_21235 IPR003593 AAA+ ATPase domain RY45_21235 IPR003959 ATPase, AAA-type, core RY45_21235 IPR004176 Clp, N-terminal RY45_21235 IPR017730 Chaperonin ClpB RY45_21235 IPR018368 ClpA/B, conserved site 1 RY45_21235 IPR019489 Clp ATPase, C-terminal RY45_21235 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21235 IPR028299 ClpA/B, conserved site 2 RY45_21235 IPR036628 RY45_21235 RY45_21240 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RY45_21240 IPR011324 Cytotoxic necrotizing factor-like, catalytic RY45_21240 IPR038371 RY45_21240 RY45_21245 IPR002942 RNA-binding S4 domain RY45_21245 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F RY45_21245 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RY45_21245 IPR006225 Pseudouridine synthase, RluC/RluD RY45_21245 IPR020103 Pseudouridine synthase, catalytic domain RY45_21245 IPR036986 RY45_21245 RY45_21250 IPR011990 Tetratricopeptide-like helical domain RY45_21250 IPR017689 Outer membrane protein assembly factor BamD RY45_21250 IPR039565 RY45_21250 RY45_21255 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_21255 IPR016156 FAD/NAD-linked reductase, dimerisation domain RY45_21255 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_21255 IPR036188 RY45_21255 RY45_21260 IPR001991 Sodium:dicarboxylate symporter RY45_21260 IPR036458 RY45_21260 RY45_21265 IPR005130 Serine dehydratase-like, alpha subunit RY45_21265 IPR021144 Uncharacterised protein family UPF0597 RY45_21270 IPR001638 Extracellular solute-binding protein, family 3 RY45_21275 IPR012136 NADP transhydrogenase, beta subunit RY45_21275 IPR029035 DHS-like NAD/FAD-binding domain RY45_21275 IPR034300 RY45_21275 RY45_21280 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RY45_21280 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RY45_21280 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 RY45_21280 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 RY45_21280 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal RY45_21280 IPR026255 NAD(P) transhydrogenase, alpha subunit RY45_21280 IPR036291 RY45_21280 RY45_21285 IPR001670 Alcohol dehydrogenase, iron-type RY45_21285 IPR018211 Alcohol dehydrogenase, iron-type, conserved site RY45_21290 IPR009057 Homeodomain-like RY45_21290 IPR009594 Transcription regulator HTH, AraC, N-terminal RY45_21290 IPR018060 DNA binding HTH domain, AraC-type RY45_21295 IPR000566 Lipocalin/cytosolic fatty-acid binding domain RY45_21295 IPR002446 Lipocalin, bacterial RY45_21295 IPR012674 Calycin RY45_21295 IPR022271 Lipocalin, ApoD type RY45_21295 IPR022272 Lipocalin family conserved site RY45_21300 IPR003660 HAMP linker domain RY45_21300 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_21300 IPR029151 Periplasmic sensor domain-like RY45_21300 IPR033479 RY45_21300 RY45_21305 IPR003817 Phosphatidylserine decarboxylase-related RY45_21305 IPR022237 Phophatidylserine decarboxylase RY45_21320 IPR002082 Aspartate carbamoyltransferase RY45_21320 IPR006130 Aspartate/ornithine carbamoyltransferase RY45_21320 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain RY45_21320 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding RY45_21320 IPR036901 RY45_21320 RY45_21325 IPR002801 Aspartate transcarbamylase regulatory subunit RY45_21325 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal RY45_21325 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal RY45_21325 IPR036792 RY45_21325 RY45_21325 IPR036793 RY45_21325 RY45_21330 IPR001669 Arginine repressor RY45_21330 IPR020899 Arginine repressor, C-terminal RY45_21330 IPR020900 Arginine repressor, DNA-binding domain RY45_21330 IPR036251 RY45_21330 RY45_21330 IPR036388 RY45_21330 RY45_21330 IPR036390 RY45_21330 RY45_21335 IPR018385 C4-dicarboxylate anaerobic carrier-like RY45_21340 IPR002292 Ornithine/putrescine carbamoyltransferase RY45_21340 IPR006130 Aspartate/ornithine carbamoyltransferase RY45_21340 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain RY45_21340 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding RY45_21340 IPR024904 Ornithine carbamoyltransferase RY45_21340 IPR036901 RY45_21340 RY45_21345 IPR001048 Aspartate/glutamate/uridylate kinase RY45_21345 IPR003964 Carbamate kinase RY45_21345 IPR036393 RY45_21345 RY45_21350 IPR003876 Arginine deiminase RY45_21355 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RY45_21355 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21365 IPR003660 HAMP linker domain RY45_21365 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_21370 IPR001851 ABC transporter, permease RY45_21375 IPR003439 ABC transporter-like RY45_21375 IPR003593 AAA+ ATPase domain RY45_21375 IPR017871 ABC transporter, conserved site RY45_21375 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21380 IPR025997 Periplasmic binding protein domain RY45_21380 IPR028082 Periplasmic binding protein-like I RY45_21385 IPR004199 Beta galactosidase small chain/ domain 5 RY45_21385 IPR006101 Glycoside hydrolase, family 2 RY45_21385 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich RY45_21385 IPR006103 Glycoside hydrolase, family 2, TIM barrel RY45_21385 IPR006104 Glycosyl hydrolases family 2, sugar binding domain RY45_21385 IPR008979 Galactose-binding domain-like RY45_21385 IPR011013 Galactose mutarotase-like domain RY45_21385 IPR013783 Immunoglobulin-like fold RY45_21385 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup RY45_21385 IPR017853 Glycoside hydrolase, superfamily RY45_21385 IPR023230 Glycoside hydrolase, family 2, conserved site RY45_21385 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase RY45_21385 IPR032312 RY45_21385 RY45_21385 IPR036156 RY45_21385 RY45_21390 IPR000843 Transcription regulator HTH, LacI RY45_21390 IPR010982 Lambda repressor-like, DNA-binding domain RY45_21390 IPR028082 Periplasmic binding protein-like I RY45_21395 IPR005886 UDP-glucose 4-epimerase GalE RY45_21395 IPR016040 NAD(P)-binding domain RY45_21395 IPR036291 RY45_21395 RY45_21400 IPR001937 Galactose-1-phosphate uridyl transferase, class I RY45_21400 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal RY45_21400 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal RY45_21400 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site RY45_21400 IPR036265 RY45_21400 RY45_21405 IPR000705 Galactokinase RY45_21405 IPR006203 GHMP kinase, ATP-binding, conserved site RY45_21405 IPR006204 GHMP kinase N-terminal domain RY45_21405 IPR006206 Mevalonate/galactokinase RY45_21405 IPR013750 GHMP kinase, C-terminal domain RY45_21405 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_21405 IPR019539 Galactokinase galactose-binding domain RY45_21405 IPR019741 Galactokinase, conserved site RY45_21405 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_21405 IPR022963 Galactokinase, bacterial RY45_21405 IPR036554 RY45_21405 RY45_21410 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase RY45_21410 IPR011013 Galactose mutarotase-like domain RY45_21410 IPR013458 Aldose 1-epimerase, bacterial RY45_21410 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup RY45_21410 IPR015443 Aldose 1-epimerase RY45_21415 IPR023210 NADP-dependent oxidoreductase domain RY45_21415 IPR036812 RY45_21415 RY45_21420 IPR003824 Undecaprenyl-diphosphatase UppP RY45_21425 IPR011051 RmlC-like cupin domain RY45_21425 IPR012807 Anti-sigma factor ChrR, putative RY45_21425 IPR014710 RmlC-like jelly roll fold RY45_21425 IPR025979 ChrR-like cupin domain RY45_21430 IPR007627 RNA polymerase sigma-70 region 2 RY45_21430 IPR007630 RNA polymerase sigma-70 region 4 RY45_21430 IPR013324 RNA polymerase sigma factor, region 3/4 RY45_21430 IPR013325 RNA polymerase sigma factor, region 2 RY45_21430 IPR014284 RNA polymerase sigma-70 like domain RY45_21430 IPR036388 RY45_21430 RY45_21435 IPR003111 Peptidase S16, lon N-terminal RY45_21435 IPR015947 PUA-like domain RY45_21440 IPR001278 Arginine-tRNA ligase RY45_21440 IPR005148 Arginyl tRNA synthetase N-terminal domain RY45_21440 IPR008909 DALR anticodon binding RY45_21440 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RY45_21440 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_21440 IPR035684 RY45_21440 RY45_21440 IPR036695 RY45_21440 RY45_21445 IPR007730 Sporulation-related domain RY45_21445 IPR036680 RY45_21445 RY45_21450 IPR001353 Proteasome, subunit alpha/beta RY45_21450 IPR022281 ATP-dependent protease, HslV subunit RY45_21450 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_21455 IPR003593 AAA+ ATPase domain RY45_21455 IPR003959 ATPase, AAA-type, core RY45_21455 IPR004491 Heat shock protein HslU RY45_21455 IPR019489 Clp ATPase, C-terminal RY45_21455 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21460 IPR011701 Major facilitator superfamily RY45_21460 IPR036259 RY45_21460 RY45_21465 IPR000847 Transcription regulator HTH, LysR RY45_21465 IPR005119 LysR, substrate-binding RY45_21465 IPR036388 RY45_21465 RY45_21465 IPR036390 RY45_21465 RY45_21470 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain RY45_21470 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site RY45_21470 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain RY45_21470 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_21470 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB RY45_21470 IPR017121 Nitrite reductase [NAD(P)H], large subunit RY45_21470 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain RY45_21470 IPR036136 RY45_21470 RY45_21470 IPR036188 RY45_21470 RY45_21475 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD RY45_21475 IPR036922 RY45_21475 RY45_21480 IPR000292 Formate/nitrite transporter RY45_21480 IPR023271 Aquaporin-like RY45_21480 IPR024002 Formate/nitrite transporter, conserved site RY45_21485 IPR000878 Tetrapyrrole methylase RY45_21485 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site RY45_21485 IPR006366 Uroporphyrin-III C-methyltransferase RY45_21485 IPR006367 Sirohaem synthase, N-terminal RY45_21485 IPR012409 Sirohaem synthase RY45_21485 IPR014776 Tetrapyrrole methylase, subdomain 2 RY45_21485 IPR014777 Tetrapyrrole methylase, subdomain 1 RY45_21485 IPR019478 Sirohaem synthase, dimerisation domain RY45_21485 IPR028281 Siroheme synthase, central domain RY45_21485 IPR035996 RY45_21485 RY45_21485 IPR036291 RY45_21485 RY45_21485 IPR037115 RY45_21485 RY45_21490 IPR000644 CBS domain RY45_21490 IPR006667 SLC41 divalent cation transporters, integral membrane domain RY45_21490 IPR006668 Magnesium transporter, MgtE intracellular domain RY45_21490 IPR006669 Magnesium transporter MgtE RY45_21490 IPR036739 RY45_21490 RY45_21490 IPR038048 RY45_21490 RY45_21490 IPR038076 RY45_21490 RY45_21495 IPR003660 HAMP linker domain RY45_21495 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_21495 IPR032255 RY45_21495 RY45_21500 IPR005493 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase RY45_21500 IPR010203 Regulator of ribonuclease activity A RY45_21500 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria RY45_21500 IPR036704 RY45_21500 RY45_21505 IPR003744 Protein of unknown function DUF165 RY45_21510 IPR022080 Protein of unknown function DUF3630 RY45_21515 IPR003846 Uncharacterised protein family UPF0061 RY45_21520 IPR009056 Cytochrome c-like domain RY45_21520 IPR036909 RY45_21520 RY45_21525 IPR001650 Helicase, C-terminal RY45_21525 IPR002121 HRDC domain RY45_21525 IPR004589 DNA helicase, ATP-dependent, RecQ type RY45_21525 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial RY45_21525 IPR010997 HRDC-like RY45_21525 IPR011545 DEAD/DEAH box helicase domain RY45_21525 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_21525 IPR018982 RQC domain RY45_21525 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21525 IPR032284 RY45_21525 RY45_21525 IPR036388 RY45_21525 RY45_21530 IPR003736 Phenylacetic acid degradation-related domain RY45_21530 IPR006683 Thioesterase superfamily RY45_21530 IPR029069 HotDog domain RY45_21545 IPR005163 3-alpha domain RY45_21545 IPR005302 Molybdenum cofactor sulfurase, C-terminal RY45_21545 IPR011037 Pyruvate kinase-like, insert domain RY45_21550 IPR000515 MetI-like domain RY45_21550 IPR035906 RY45_21550 RY45_21555 IPR000515 MetI-like domain RY45_21555 IPR035906 RY45_21555 RY45_21560 IPR003439 ABC transporter-like RY45_21560 IPR003593 AAA+ ATPase domain RY45_21560 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit RY45_21560 IPR008995 Molybdate/tungstate binding, C-terminal RY45_21560 IPR013611 Transport-associated OB, type 2 RY45_21560 IPR017871 ABC transporter, conserved site RY45_21560 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21565 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein RY45_21565 IPR006059 Bacterial extracellular solute-binding, family 1 RY45_21570 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein RY45_21570 IPR006059 Bacterial extracellular solute-binding, family 1 RY45_21575 IPR005814 Aminotransferase class-III RY45_21575 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_21575 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_21575 IPR015424 Pyridoxal phosphate-dependent transferase RY45_21580 IPR008146 Glutamine synthetase, catalytic domain RY45_21580 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain RY45_21580 IPR027303 Glutamine synthetase, glycine-rich site RY45_21580 IPR036651 RY45_21580 RY45_21585 IPR000962 Zinc finger, DksA/TraR C4-type RY45_21585 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RY45_21585 IPR037187 RY45_21585 RY45_21595 IPR009305 Protein of unknown function DUF962 RY45_21600 IPR010292 Uncharacterised protein family CreA RY45_21605 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_21605 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RY45_21605 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_21605 IPR036291 RY45_21605 RY45_21610 IPR013126 Heat shock protein 70 family RY45_21610 IPR018181 Heat shock protein 70, conserved site RY45_21615 IPR005184 Domain of unknown function DUF306, Meta/HslJ RY45_21615 IPR038670 RY45_21615 RY45_21620 IPR013976 Metal-dependent hydrolase HDOD RY45_21625 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RY45_21625 IPR013780 Glycosyl hydrolase, family 13, all-beta RY45_21625 IPR014756 Immunoglobulin E-set RY45_21625 IPR017069 Maltodextrin glucosidase RY45_21625 IPR017853 Glycoside hydrolase, superfamily RY45_21625 IPR032091 RY45_21625 RY45_21630 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RY45_21630 IPR020025 Pseudaminic acid biosynthesis, PseB RY45_21630 IPR036291 RY45_21630 RY45_21635 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RY45_21635 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_21635 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_21635 IPR015424 Pyridoxal phosphate-dependent transferase RY45_21635 IPR020026 Pseudaminic acid biosynthesis, PseC RY45_21640 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding RY45_21640 IPR008279 PEP-utilising enzyme, mobile domain RY45_21640 IPR036637 RY45_21640 RY45_21655 IPR001173 Glycosyltransferase 2-like RY45_21655 IPR029044 Nucleotide-diphospho-sugar transferases RY45_21655 IPR036237 RY45_21655 RY45_21660 IPR008670 Acyl-CoA reductase, LuxC RY45_21660 IPR016161 Aldehyde/histidinol dehydrogenase RY45_21665 IPR007534 Acyl-protein synthetase, LuxE RY45_21670 IPR000873 AMP-dependent synthetase/ligase RY45_21670 IPR020845 AMP-binding, conserved site RY45_21675 IPR002347 Glucose/ribitol dehydrogenase RY45_21675 IPR020904 Short-chain dehydrogenase/reductase, conserved site RY45_21675 IPR036291 RY45_21675 RY45_21680 IPR036736 RY45_21680 RY45_21685 IPR000182 GNAT domain RY45_21685 IPR016181 Acyl-CoA N-acyltransferase RY45_21690 IPR003329 Acylneuraminate cytidylyltransferase RY45_21690 IPR020039 Pseudaminic acid biosynthesis, PseF RY45_21690 IPR029044 Nucleotide-diphospho-sugar transferases RY45_21695 IPR007235 Glycosyl transferase, family 28, C-terminal RY45_21695 IPR020023 Pseudaminic acid biosynthesis-associated protein PseG RY45_21700 IPR013132 N-acetylneuraminic acid synthase, N-terminal RY45_21700 IPR013785 Aldolase-type TIM barrel RY45_21700 IPR013974 SAF domain RY45_21700 IPR020030 Pseudaminic acid biosynthesis, PseI RY45_21700 IPR036732 RY45_21700 RY45_21705 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like RY45_21715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_21720 IPR012353 Uncharacterised conserved protein UCP01524, polysaccharide biosynthesis aminopeptidase-like RY45_21720 IPR032589 RY45_21720 RY45_21720 IPR032610 RY45_21720 RY45_21720 IPR032622 RY45_21720 RY45_21720 IPR036388 RY45_21720 RY45_21725 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_21730 IPR003679 Aminoglycoside 3-N-acetyltransferase RY45_21730 IPR028345 RY45_21730 RY45_21735 IPR036736 RY45_21735 RY45_21740 IPR010033 HAD-superfamily phosphatase, subfamily IIIC RY45_21740 IPR010037 FkbH domain RY45_21740 IPR023214 HAD-like domain RY45_21740 IPR036412 RY45_21740 RY45_21745 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like RY45_21745 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type RY45_21745 IPR036451 RY45_21745 RY45_21755 IPR010280 (Uracil-5)-methyltransferase family RY45_21755 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA RY45_21755 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_21755 IPR030390 RY45_21755 RY45_21755 IPR030391 RY45_21755 RY45_21760 IPR001789 Signal transduction response regulator, receiver domain RY45_21760 IPR001867 Signal transduction response regulator, C-terminal RY45_21760 IPR011006 CheY-like superfamily RY45_21760 IPR016032 Signal transduction response regulator, C-terminal effector RY45_21760 IPR036388 RY45_21760 RY45_21765 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_21765 IPR003660 HAMP linker domain RY45_21765 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_21765 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_21765 IPR036097 RY45_21765 RY45_21765 IPR036890 RY45_21765 RY45_21775 IPR001891 Malic oxidoreductase RY45_21775 IPR012301 Malic enzyme, N-terminal domain RY45_21775 IPR012302 Malic enzyme, NAD-binding RY45_21775 IPR015884 Malic enzyme, conserved site RY45_21775 IPR036291 RY45_21775 RY45_21775 IPR037062 RY45_21775 RY45_21780 IPR016040 NAD(P)-binding domain RY45_21780 IPR021295 Protein of unknown function DUF2867 RY45_21780 IPR036291 RY45_21780 RY45_21785 IPR002150 Ribosomal protein L31 RY45_21785 IPR027491 Ribosomal protein L31 type A RY45_21785 IPR034704 RY45_21785 RY45_21790 IPR001650 Helicase, C-terminal RY45_21790 IPR005259 Primosomal protein n RY45_21790 IPR011545 DEAD/DEAH box helicase domain RY45_21790 IPR014001 Helicase, superfamily 1/2, ATP-binding domain RY45_21790 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21800 IPR001647 DNA-binding HTH domain, TetR-type RY45_21800 IPR009057 Homeodomain-like RY45_21800 IPR036271 RY45_21800 RY45_21805 IPR007065 HPP RY45_21810 IPR000498 Outer membrane protein, OmpA-like, transmembrane domain RY45_21810 IPR002368 Outer membrane protein, OmpA RY45_21810 IPR006664 Outer membrane protein, bacterial RY45_21810 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal RY45_21810 IPR006690 Outer membrane protein, OmpA-like, conserved site RY45_21810 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel RY45_21810 IPR036737 RY45_21810 RY45_21815 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RY45_21815 IPR001721 ACT-like domain RY45_21815 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_21815 IPR005787 Threonine dehydratase, biosynthetic RY45_21815 IPR036052 RY45_21815 RY45_21815 IPR038110 RY45_21815 RY45_21820 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase RY45_21820 IPR004404 Dihydroxy-acid dehydratase RY45_21820 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site RY45_21820 IPR037237 RY45_21820 RY45_21825 IPR001544 Aminotransferase, class IV RY45_21825 IPR005785 Branched-chain amino acid aminotransferase I RY45_21825 IPR018300 Aminotransferase, class IV, conserved site RY45_21825 IPR036038 RY45_21825 RY45_21835 IPR000399 TPP-binding enzyme, conserved site RY45_21835 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RY45_21835 IPR012000 Thiamine pyrophosphate enzyme, central domain RY45_21835 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RY45_21835 IPR012846 Acetolactate synthase, large subunit, biosynthetic RY45_21835 IPR029035 DHS-like NAD/FAD-binding domain RY45_21835 IPR029061 Thiamin diphosphate-binding fold RY45_21840 IPR000523 Magnesium chelatase, ChlI subunit RY45_21840 IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase RY45_21840 IPR003593 AAA+ ATPase domain RY45_21840 IPR004482 Mg chelatase-related protein RY45_21840 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_21840 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_21840 IPR025158 Mg chelatase-related protein, C-terminal domain RY45_21840 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21845 IPR002123 Phospholipid/glycerol acyltransferase RY45_21850 IPR002123 Phospholipid/glycerol acyltransferase RY45_21855 IPR007553 Domain of unknown function DUF523 RY45_21860 IPR015797 NUDIX hydrolase domain-like RY45_21860 IPR036388 RY45_21860 RY45_21860 IPR036390 RY45_21860 RY45_21865 IPR000868 Isochorismatase-like RY45_21865 IPR036380 RY45_21865 RY45_21870 IPR006406 Nicotinate phosphoribosyltransferase RY45_21870 IPR007229 Nicotinate phosphoribosyltransferase family RY45_21870 IPR036068 RY45_21870 RY45_21875 IPR001638 Extracellular solute-binding protein, family 3 RY45_21875 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic protein RY45_21875 IPR030836 RY45_21875 RY45_21880 IPR003439 ABC transporter-like RY45_21880 IPR003593 AAA+ ATPase domain RY45_21880 IPR017871 ABC transporter, conserved site RY45_21880 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21885 IPR000515 MetI-like domain RY45_21885 IPR005769 ABC transporter, permease PhnE/PtxC RY45_21885 IPR035906 RY45_21885 RY45_21890 IPR001853 DSBA-like thioredoxin domain RY45_21890 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL RY45_21890 IPR036249 RY45_21890 RY45_21895 IPR002575 Aminoglycoside phosphotransferase RY45_21895 IPR011009 Protein kinase-like domain RY45_21895 IPR032882 RY45_21895 RY45_21900 IPR013783 Immunoglobulin-like fold RY45_21900 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG RY45_21900 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_21900 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_21900 IPR032879 RY45_21900 RY45_21905 IPR009383 Protein of unknown function DUF1040 RY45_21905 IPR038134 RY45_21905 RY45_21910 IPR000160 GGDEF domain RY45_21910 IPR029787 Nucleotide cyclase RY45_21915 IPR000551 MerR-type HTH domain RY45_21915 IPR009061 DNA binding domain, putative RY45_21915 IPR011789 Cu(I)-responsive transcriptional regulator RY45_21915 IPR015358 Transcription regulator MerR, DNA binding RY45_21920 IPR001757 Cation-transporting P-type ATPase RY45_21920 IPR006121 Heavy metal-associated domain, HMA RY45_21920 IPR008250 P-type ATPase, A domain RY45_21920 IPR017969 Heavy-metal-associated, conserved site RY45_21920 IPR018303 P-type ATPase, phosphorylation site RY45_21920 IPR023214 HAD-like domain RY45_21920 IPR023298 P-type ATPase, transmembrane domain RY45_21920 IPR023299 P-type ATPase, cytoplasmic domain N RY45_21920 IPR027256 Cation-transporting P-type ATPase, subfamily IB RY45_21920 IPR036163 RY45_21920 RY45_21920 IPR036412 RY45_21920 RY45_21925 IPR000836 Phosphoribosyltransferase domain RY45_21925 IPR004467 Orotate phosphoribosyl transferase domain RY45_21925 IPR023031 Orotate phosphoribosyltransferase RY45_21925 IPR029057 Phosphoribosyltransferase-like RY45_21930 IPR001247 Exoribonuclease, phosphorolytic domain 1 RY45_21930 IPR002381 Ribonuclease phosphorolytic, bacterial-type RY45_21930 IPR015847 Exoribonuclease, phosphorolytic domain 2 RY45_21930 IPR018336 Ribonuclease PH, conserved site RY45_21930 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_21930 IPR027408 PNPase/RNase PH domain RY45_21930 IPR036345 RY45_21930 RY45_21935 IPR005229 Conserved hypothetical protein CHP00255 RY45_21935 IPR013527 YicC-like, N-terminal RY45_21935 IPR013551 Domain of unknown function DUF1732 RY45_21940 IPR002201 Glycosyl transferase, family 9 RY45_21945 IPR002201 Glycosyl transferase, family 9 RY45_21955 IPR002654 Glycosyl transferase, family 25 RY45_21960 IPR007016 O-antigen ligase-related RY45_21965 IPR002509 Polysaccharide deacetylase RY45_21965 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel RY45_21965 IPR028098 Glycosyltransferase subfamily 4, N-terminal domain RY45_21970 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain RY45_21970 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase RY45_21970 IPR036291 RY45_21970 RY45_21975 IPR001647 DNA-binding HTH domain, TetR-type RY45_21975 IPR009057 Homeodomain-like RY45_21975 IPR025722 Bacterial transcriptional repressor TetR RY45_21980 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site RY45_21980 IPR004839 Aminotransferase, class I/classII RY45_21980 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase RY45_21980 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_21980 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_21980 IPR015424 Pyridoxal phosphate-dependent transferase RY45_21985 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site RY45_21985 IPR004627 L-threonine 3-dehydrogenase RY45_21985 IPR011032 GroES (chaperonin 10)-like RY45_21985 IPR013149 Alcohol dehydrogenase, C-terminal RY45_21985 IPR013154 Alcohol dehydrogenase GroES-like RY45_21985 IPR020843 Polyketide synthase, enoylreductase RY45_21985 IPR036291 RY45_21985 RY45_21990 IPR002323 Cytochrome c, class IE RY45_21990 IPR009056 Cytochrome c-like domain RY45_21990 IPR036909 RY45_21990 RY45_21995 IPR000160 GGDEF domain RY45_21995 IPR001633 EAL domain RY45_21995 IPR029787 Nucleotide cyclase RY45_21995 IPR035919 RY45_21995 RY45_22000 IPR005752 DNA helicase, ATP-dependent, RepA type RY45_22000 IPR013986 DExx box DNA helicase domain RY45_22000 IPR014017 DNA helicase, UvrD-like, C-terminal RY45_22000 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22000 IPR034739 RY45_22000 RY45_22005 IPR000192 Aminotransferase class V domain RY45_22005 IPR010970 Cysteine desulfurase, SufS RY45_22005 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 RY45_22005 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 RY45_22005 IPR015424 Pyridoxal phosphate-dependent transferase RY45_22005 IPR016454 Cysteine desulfurase, NifS RY45_22005 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site RY45_22010 IPR003808 Fe-S metabolism associated domain, SufE-like RY45_22015 IPR000594 UBA/THIF-type NAD/FAD binding fold RY45_22015 IPR035985 RY45_22015 RY45_22050 IPR011990 Tetratricopeptide-like helical domain RY45_22055 IPR003538 Gram-negative bacterial TonB protein RY45_22055 IPR006260 TonB, C-terminal RY45_22055 IPR037682 RY45_22055 RY45_22060 IPR003400 Biopolymer transport protein ExbD/TolR RY45_22065 IPR002898 MotA/TolQ/ExbB proton channel RY45_22070 IPR002898 MotA/TolQ/ExbB proton channel RY45_22070 IPR017270 Outer membrane stability protein, TolR RY45_22075 IPR016866 Uncharacterised conserved protein UCP028069 RY45_22080 IPR000792 Transcription regulator LuxR, C-terminal RY45_22080 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RY45_22080 IPR016032 Signal transduction response regulator, C-terminal effector RY45_22080 IPR036388 RY45_22080 RY45_22080 IPR036693 RY45_22080 RY45_22085 IPR001347 Sugar isomerase (SIS) RY45_22085 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising RY45_22085 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_22090 IPR001034 HTH DeoR N-terminal domain RY45_22090 IPR014036 DeoR C-terminal sensor domain RY45_22090 IPR018356 Transcription regulator, HTH DeoR-type, conserved site RY45_22090 IPR036388 RY45_22090 RY45_22090 IPR036390 RY45_22090 RY45_22090 IPR037171 RY45_22090 RY45_22095 IPR001789 Signal transduction response regulator, receiver domain RY45_22095 IPR001867 Signal transduction response regulator, C-terminal RY45_22095 IPR011006 CheY-like superfamily RY45_22095 IPR016032 Signal transduction response regulator, C-terminal effector RY45_22095 IPR036388 RY45_22095 RY45_22100 IPR003594 Histidine kinase-like ATPase, C-terminal domain RY45_22100 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain RY45_22100 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RY45_22100 IPR029151 Periplasmic sensor domain-like RY45_22100 IPR036097 RY45_22100 RY45_22100 IPR036890 RY45_22100 RY45_22105 IPR001460 Penicillin-binding protein, transpeptidase RY45_22105 IPR002137 Beta-lactamase, class-D active site RY45_22105 IPR012338 Beta-lactamase/transpeptidase-like RY45_22110 IPR010364 Uncharacterised protein family, inner membrane CreD RY45_22115 IPR001451 Bacterial transferase hexapeptide repeat RY45_22115 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase RY45_22115 IPR011004 Trimeric LpxA-like RY45_22115 IPR018357 Hexapeptide transferase, conserved site RY45_22115 IPR025877 MobA-like NTP transferase domain RY45_22115 IPR029044 Nucleotide-diphospho-sugar transferases RY45_22120 IPR001469 ATPase, F1 complex, delta/epsilon subunit RY45_22120 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal RY45_22120 IPR020547 ATPase, F1 complex, delta/epsilon subunit, C-terminal domain RY45_22120 IPR036771 RY45_22120 RY45_22120 IPR036794 RY45_22120 RY45_22125 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RY45_22125 IPR003593 AAA+ ATPase domain RY45_22125 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain RY45_22125 IPR005722 ATPase, F1 complex, beta subunit RY45_22125 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RY45_22125 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal RY45_22125 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22125 IPR036121 RY45_22125 RY45_22130 IPR000131 ATPase, F1 complex, gamma subunit RY45_22130 IPR023632 ATPase, F1 complex, gamma subunit conserved site RY45_22130 IPR035968 RY45_22130 RY45_22135 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RY45_22135 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal RY45_22135 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain RY45_22135 IPR005294 ATPase, F1 complex, alpha subunit RY45_22135 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RY45_22135 IPR023366 ATP synthase subunit alpha-like domain RY45_22135 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22135 IPR036121 RY45_22135 RY45_22135 IPR038376 RY45_22135 RY45_22140 IPR000711 ATPase, OSCP/delta subunit RY45_22140 IPR020781 ATPase, OSCP/delta subunit, conserved site RY45_22140 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RY45_22145 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast RY45_22145 IPR005864 ATPase, F0 complex, subunit B, bacterial RY45_22145 IPR028987 F-type ATP synthase subunit B-like, membrane domain RY45_22150 IPR000454 ATPase, F0 complex, subunit C RY45_22150 IPR002379 V-ATPase proteolipid subunit C-like domain RY45_22150 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast RY45_22150 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site RY45_22150 IPR035921 RY45_22150 RY45_22150 IPR038662 RY45_22150 RY45_22155 IPR000568 ATPase, F0 complex, subunit A RY45_22155 IPR023011 ATPase, F0 complex, subunit A, active site RY45_22155 IPR035908 RY45_22155 RY45_22160 IPR005598 ATP synthase protein I RY45_22165 IPR003115 ParB/Sulfiredoxin RY45_22165 IPR004437 ParB/RepB/Spo0J partition protein family RY45_22165 IPR036086 RY45_22165 RY45_22170 IPR025669 AAA domain RY45_22170 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22175 IPR003682 rRNA small subunit methyltransferase G RY45_22175 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like RY45_22180 IPR002218 Glucose-inhibited division protein A-related RY45_22180 IPR004416 Glucose-inhibited division protein A RY45_22180 IPR020595 Glucose-inhibited division protein A-related, conserved site RY45_22180 IPR026904 GidA associated domain 3 RY45_22180 IPR036188 RY45_22180 RY45_22185 IPR001094 Flavodoxin RY45_22185 IPR008254 Flavodoxin/nitric oxide synthase RY45_22185 IPR029039 Flavoprotein-like RY45_22190 IPR000531 TonB-dependent receptor, beta-barrel RY45_22190 IPR010105 TonB-dependent siderophore receptor RY45_22190 IPR010916 TonB box, conserved site RY45_22190 IPR012910 TonB-dependent receptor, plug RY45_22190 IPR036942 RY45_22190 RY45_22190 IPR037066 RY45_22190 RY45_22195 IPR003439 ABC transporter-like RY45_22195 IPR003593 AAA+ ATPase domain RY45_22195 IPR005898 Cyclic peptide transporter RY45_22195 IPR017871 ABC transporter, conserved site RY45_22195 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22195 IPR036640 RY45_22195 RY45_22200 IPR003439 ABC transporter-like RY45_22200 IPR003593 AAA+ ATPase domain RY45_22200 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22205 IPR002491 ABC transporter periplasmic binding domain RY45_22210 IPR000522 ABC transporter, permease protein RY45_22210 IPR037294 RY45_22210 RY45_22215 IPR004520 tRNA modification GTPase MnmE RY45_22215 IPR005225 Small GTP-binding protein domain RY45_22215 IPR006073 GTP binding domain RY45_22215 IPR018948 GTP-binding protein TrmE, N-terminal RY45_22215 IPR025867 tRNA modification GTPase MnmE C-terminal domain RY45_22215 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RY45_22215 IPR027368 tRNA modification GTPase MnmE domain 2 RY45_22215 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22220 IPR001708 Membrane insertase OXA1/ALB3/YidC RY45_22220 IPR019998 Membrane insertase YidC RY45_22220 IPR028053 Membrane insertase YidC, N-terminal RY45_22220 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RY45_22220 IPR038210 RY45_22220 RY45_22220 IPR038221 RY45_22220 RY45_22225 IPR000100 Ribonuclease P RY45_22225 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_22225 IPR020539 Ribonuclease P, conserved site RY45_22225 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_22230 IPR000271 Ribosomal protein L34 RY45_22230 IPR020939 Ribosomal protein L34, conserved site RY45_22235 IPR003439 ABC transporter-like RY45_22235 IPR003593 AAA+ ATPase domain RY45_22235 IPR017871 ABC transporter, conserved site RY45_22235 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22235 IPR030679 RY45_22235 RY45_22240 IPR000515 MetI-like domain RY45_22240 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family RY45_22240 IPR035906 RY45_22240 RY45_22245 IPR001638 Extracellular solute-binding protein, family 3 RY45_22275 IPR036388 RY45_22275 RY45_22275 IPR036390 RY45_22275 RY45_22280 IPR001668 Plasmid recombination enzyme RY45_22290 IPR010985 Ribbon-helix-helix RY45_22290 IPR012869 Protein of unknown function DUF1662 RY45_22295 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RY45_22295 IPR035093 RY45_22295 RY45_22300 IPR004322 Plasmid replicase, bacterial RY45_22300 IPR014820 Primase, C-terminal 1 RY45_22300 IPR016032 Signal transduction response regulator, C-terminal effector RY45_22300 IPR036388 RY45_22300 RY45_22310 IPR008687 Bacterial mobilisation RY45_22325 IPR010985 Ribbon-helix-helix RY45_22325 IPR013321 Arc-type ribbon-helix-helix RY45_22325 IPR015354 DNA partition complex, ParG RY45_22330 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RY45_22330 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22335 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RY45_22335 IPR035093 RY45_22335