RY45_00005	PF00308	Bacterial dnaA  protein
RY45_00005	PF08299	Bacterial dnaA protein helix-turn-helix
RY45_00005	PF11638	DnaA N-terminal domain
RY45_00010	PF00712	DNA polymerase III beta subunit, N-terminal domain
RY45_00010	PF02767	DNA polymerase III beta subunit, central domain
RY45_00010	PF02768	DNA polymerase III beta subunit, C-terminal domain
RY45_00015	PF02463	RecF/RecN/SMC N terminal domain
RY45_00020	PF00204	DNA gyrase B
RY45_00020	PF00986	DNA gyrase B subunit, carboxyl terminus
RY45_00020	PF01751	Toprim domain
RY45_00020	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_00025	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_00030	PF08279	HTH domain
RY45_00030	PF13280	RY45_00030
RY45_00035	PF00011	Hsp20/alpha crystallin family
RY45_00040	PF00011	Hsp20/alpha crystallin family
RY45_00045	PF00155	Aminotransferase class I and II
RY45_00055	PF02311	AraC-like ligand binding domain
RY45_00055	PF12833	Helix-turn-helix domain
RY45_00060	PF07690	Major Facilitator Superfamily
RY45_00065	PF00072	Response regulator receiver domain
RY45_00065	PF00486	Transcriptional regulatory protein, C terminal
RY45_00070	PF00512	His Kinase A (phospho-acceptor) domain
RY45_00070	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_00070	PF02702	Osmosensitive K+ channel His kinase sensor domain
RY45_00070	PF13493	Domain of unknown function (DUF4118)
RY45_00075	PF02669	RY45_00075
RY45_00080	PF00122	E1-E2 ATPase
RY45_00080	PF00702	haloacid dehalogenase-like hydrolase
RY45_00085	PF03814	RY45_00085
RY45_00090	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
RY45_00090	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_00095	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_00095	PF13426	PAS domain
RY45_00095	PF17149	RY45_00095
RY45_00100	PF00873	AcrB/AcrD/AcrF family
RY45_00105	PF00529	HlyD family secretion protein
RY45_00105	PF16576	RY45_00105
RY45_00110	PF00440	Bacterial regulatory proteins, tetR family
RY45_00110	PF16295	RY45_00110
RY45_00135	PF00652	Ricin-type beta-trefoil lectin domain
RY45_00140	PF00224	Pyruvate kinase, barrel domain
RY45_00145	PF07690	Major Facilitator Superfamily
RY45_00150	PF13343	Bacterial extracellular solute-binding protein
RY45_00155	PF00512	His Kinase A (phospho-acceptor) domain
RY45_00155	PF00672	HAMP domain
RY45_00155	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_00155	PF13426	PAS domain
RY45_00160	PF00072	Response regulator receiver domain
RY45_00160	PF02954	Bacterial regulatory protein, Fis family
RY45_00160	PF14532	Sigma-54 interaction domain
RY45_00170	PF08282	haloacid dehalogenase-like hydrolase
RY45_00175	PF12146	Putative lysophospholipase
RY45_00180	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_00185	PF00588	SpoU rRNA Methylase family
RY45_00185	PF12105	SpoU, rRNA methylase, C-terminal
RY45_00190	PF02824	TGS domain
RY45_00190	PF04607	Region found in RelA / SpoT proteins
RY45_00190	PF13291	ACT domain
RY45_00190	PF13328	HD domain
RY45_00195	PF01192	RNA polymerase Rpb6
RY45_00200	PF00625	Guanylate kinase
RY45_00205	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
RY45_00210	PF06293	Lipopolysaccharide kinase (Kdo/WaaP) family
RY45_00215	PF00990	GGDEF domain
RY45_00215	PF08447	PAS fold
RY45_00220	PF00892	EamA-like transporter family
RY45_00230	PF00892	EamA-like transporter family
RY45_00235	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_00235	PF03466	LysR substrate binding domain
RY45_00240	PF00579	tRNA synthetases class I (W and Y)
RY45_00245	PF00582	Universal stress protein family
RY45_00250	PF07055	Enoyl reductase FAD binding domain
RY45_00250	PF12241	Trans-2-enoyl-CoA reductase catalytic region
RY45_00250	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
RY45_00255	PF00990	GGDEF domain
RY45_00260	PF00210	Ferritin-like domain
RY45_00265	PF03486	HI0933-like protein
RY45_00270	PF07690	Major Facilitator Superfamily
RY45_00275	PF01810	RY45_00275
RY45_00280	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
RY45_00290	PF15976	RY45_00290
RY45_00290	PF16967	RY45_00290
RY45_00300	PF16449	RY45_00300
RY45_00305	PF00072	Response regulator receiver domain
RY45_00305	PF00196	Bacterial regulatory proteins, luxR family
RY45_00310	PF00072	Response regulator receiver domain
RY45_00310	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_00310	PF00512	His Kinase A (phospho-acceptor) domain
RY45_00310	PF01627	Hpt domain
RY45_00310	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_00320	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_00320	PF06580	RY45_00320
RY45_00320	PF07694	5TMR of 5TMR-LYT
RY45_00325	PF00072	Response regulator receiver domain
RY45_00325	PF04397	LytTr DNA-binding domain
RY45_00330	PF07690	Major Facilitator Superfamily
RY45_00335	PF02222	ATP-grasp domain
RY45_00340	PF00731	AIR carboxylase
RY45_00350	PF05982	RY45_00350
RY45_00355	PF05954	Phage late control gene D protein (GPD)
RY45_00360	PF06995	RY45_00360
RY45_00365	PF10145	RY45_00365
RY45_00370	PF06528	RY45_00370
RY45_00375	PF10109	RY45_00375
RY45_00380	PF04985	RY45_00380
RY45_00385	PF04984	Phage tail sheath protein
RY45_00385	PF17482	RY45_00385
RY45_00390	PF02413	RY45_00390
RY45_00395	PF12571	RY45_00395
RY45_00400	PF09684	RY45_00400
RY45_00405	PF04865	RY45_00405
RY45_00410	PF04965	Gene 25-like lysozyme
RY45_00415	PF04717	Phage-related baseplate assembly protein
RY45_00420	PF05069	RY45_00420
RY45_00425	PF06891	RY45_00425
RY45_00435	PF01471	Putative peptidoglycan binding domain
RY45_00435	PF11860	RY45_00435
RY45_00440	PF05449	RY45_00440
RY45_00450	PF16931	RY45_00450
RY45_00455	PF01258	Prokaryotic dksA/traR C4-type zinc finger
RY45_00460	PF05489	Phage Tail Protein X
RY45_00465	PF05926	RY45_00465
RY45_00470	PF05944	RY45_00470
RY45_00475	PF05125	RY45_00475
RY45_00480	PF05929	RY45_00480
RY45_00485	PF03237	Terminase-like family
RY45_00485	PF06056	Putative ATPase subunit of terminase (gpP-like)
RY45_00485	PF17289	RY45_00485
RY45_00500	PF13518	Helix-turn-helix domain
RY45_00505	PF11686	RY45_00505
RY45_00520	PF12961	Domain of Unknown Function with PDB structure (DUF3850)
RY45_00535	PF05840	RY45_00535
RY45_00575	PF13064	RY45_00575
RY45_00580	PF05099	Tellurite resistance protein TerB
RY45_00600	PF06892	RY45_00600
RY45_00610	PF00717	Peptidase S24-like
RY45_00610	PF07022	Bacteriophage CI repressor helix-turn-helix domain
RY45_00620	PF00589	Phage integrase family
RY45_00625	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_00625	PF03466	LysR substrate binding domain
RY45_00630	PF00593	TonB dependent receptor
RY45_00630	PF07715	TonB-dependent Receptor Plug Domain
RY45_00645	PF00076	RNA recognition motif
RY45_00680	PF07969	Amidohydrolase family
RY45_00685	PF02537	RY45_00685
RY45_00690	PF01209	ubiE/COQ5 methyltransferase family
RY45_00695	PF02036	SCP-2 sterol transfer family
RY45_00700	PF03109	RY45_00700
RY45_00705	PF02416	mttA/Hcf106 family
RY45_00710	PF02416	mttA/Hcf106 family
RY45_00715	PF00902	Sec-independent protein translocase protein (TatC)
RY45_00720	PF01026	TatD related DNase
RY45_00725	PF00490	Delta-aminolevulinic acid dehydratase
RY45_00730	PF01432	Peptidase family M3
RY45_00735	PF00563	EAL domain
RY45_00735	PF00989	PAS fold
RY45_00735	PF00990	GGDEF domain
RY45_00735	PF13426	PAS domain
RY45_00740	PF04445	Putative SAM-dependent methyltransferase
RY45_00745	PF07073	Modulator of Rho-dependent transcription termination (ROF)
RY45_00750	PF14321	RY45_00750
RY45_00755	PF02541	Ppx/GppA phosphatase family
RY45_00760	PF00270	DEAD/DEAH box helicase
RY45_00760	PF00271	Helicase conserved C-terminal domain
RY45_00765	PF00085	Thioredoxin
RY45_00770	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
RY45_00770	PF07497	Rho termination factor, RNA-binding domain
RY45_00770	PF07498	Rho termination factor, N-terminal domain
RY45_00780	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
RY45_00785	PF00175	Oxidoreductase NAD-binding domain
RY45_00790	PF04380	RY45_00790
RY45_00795	PF12262	RY45_00795
RY45_00800	PF01694	Rhomboid family
RY45_00800	PF12122	Protein of unknown function (DUF3582)
RY45_00805	PF00581	Rhodanese-like domain
RY45_00810	PF01810	RY45_00810
RY45_00815	PF02311	AraC-like ligand binding domain
RY45_00815	PF12833	Helix-turn-helix domain
RY45_00820	PF00005	ABC transporter
RY45_00825	PF00005	ABC transporter
RY45_00825	PF12399	Branched-chain amino acid ATP-binding cassette transporter
RY45_00830	PF02653	RY45_00830
RY45_00830	PF11862	RY45_00830
RY45_00835	PF02653	RY45_00835
RY45_00840	PF13458	Periplasmic binding protein
RY45_00845	PF00356	Bacterial regulatory proteins, lacI family
RY45_00845	PF13377	Periplasmic binding protein-like domain
RY45_00850	PF02056	Family 4 glycosyl hydrolase
RY45_00850	PF11975	Family 4 glycosyl hydrolase C-terminal domain
RY45_00855	PF00367	phosphotransferase system, EIIB
RY45_00855	PF02378	Phosphotransferase system, EIIC
RY45_00860	PF00392	Bacterial regulatory proteins, gntR family
RY45_00860	PF07702	UTRA domain
RY45_00865	PF00158	Sigma-54 interaction domain
RY45_00865	PF01590	GAF domain
RY45_00870	PF00258	Flavodoxin
RY45_00870	PF00301	Rubredoxin
RY45_00870	PF00753	Metallo-beta-lactamase superfamily
RY45_00875	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_00880	PF09313	Domain of unknown function (DUF1971)
RY45_00885	PF12801	RY45_00885
RY45_00890	PF03222	Tryptophan/tyrosine permease family
RY45_00900	PF05932	Tir chaperone protein (CesT) family
RY45_00905	PF03545	Yersinia virulence determinant (YopE)
RY45_00910	PF10517	RY45_00910
RY45_00920	PF13671	AAA domain
RY45_00925	PF02092	RY45_00925
RY45_00925	PF05746	DALR anticodon binding domain
RY45_00930	PF02091	Glycyl-tRNA synthetase alpha subunit
RY45_00935	PF03352	Methyladenine glycosylase
RY45_00940	PF00857	Isochorismatase family
RY45_00945	PF00691	OmpA family
RY45_00945	PF13488	RY45_00945
RY45_00955	PF01042	Endoribonuclease L-PSP
RY45_00960	PF01206	Sulfurtransferase TusA
RY45_00970	PF01547	Bacterial extracellular solute-binding protein
RY45_00975	PF00512	His Kinase A (phospho-acceptor) domain
RY45_00975	PF00672	HAMP domain
RY45_00975	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_00980	PF00072	Response regulator receiver domain
RY45_00980	PF00486	Transcriptional regulatory protein, C terminal
RY45_00985	PF00108	Thiolase, N-terminal domain
RY45_00985	PF02803	Thiolase, C-terminal domain
RY45_00990	PF00378	Enoyl-CoA hydratase/isomerase family
RY45_00990	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
RY45_00990	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
RY45_00995	PF00501	AMP-binding enzyme
RY45_00995	PF13193	AMP-binding enzyme C-terminal domain
RY45_00995	PF16177	RY45_00995
RY45_01000	PF00557	Metallopeptidase family M24
RY45_01005	PF01205	Uncharacterized protein family UPF0029
RY45_01005	PF09186	Domain of unknown function (DUF1949)
RY45_01010	PF02386	Cation transport protein
RY45_01015	PF12724	Flavodoxin domain
RY45_01040	PF00583	Acetyltransferase (GNAT) family
RY45_01040	PF13380	CoA binding domain
RY45_01040	PF13549	ATP-grasp domain
RY45_01040	PF13607	Succinyl-CoA ligase like flavodoxin domain
RY45_01050	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_01055	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_01055	PF03466	LysR substrate binding domain
RY45_01060	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
RY45_01060	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
RY45_01065	PF00342	Phosphoglucose isomerase
RY45_01080	PF00924	Mechanosensitive ion channel
RY45_01080	PF05552	Conserved TM helix
RY45_01085	PF00440	Bacterial regulatory proteins, tetR family
RY45_01090	PF00692	dUTPase
RY45_01095	PF02441	Flavoprotein
RY45_01095	PF04127	DNA / pantothenate metabolism flavoprotein
RY45_01100	PF04002	RadC-like JAB domain
RY45_01105	PF00471	Ribosomal protein L33
RY45_01115	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
RY45_01115	PF06827	Zinc finger found in FPG and IleRS
RY45_01115	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
RY45_01120	PF04393	RY45_01120
RY45_01125	PF01467	Cytidylyltransferase
RY45_01130	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
RY45_01135	PF00535	Glycosyl transferase family 2
RY45_01140	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
RY45_01145	PF00534	Glycosyl transferases group 1
RY45_01145	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
RY45_01150	PF03611	RY45_01150
RY45_01155	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
RY45_01160	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
RY45_01165	PF00356	Bacterial regulatory proteins, lacI family
RY45_01165	PF13377	Periplasmic binding protein-like domain
RY45_01170	PF00107	Zinc-binding dehydrogenase
RY45_01170	PF08240	Alcohol dehydrogenase GroES-like domain
RY45_01175	PF10973	RY45_01175
RY45_01180	PF03748	RY45_01180
RY45_01185	PF04345	Chorismate lyase
RY45_01190	PF01040	UbiA prenyltransferase family
RY45_01195	PF01553	Acyltransferase
RY45_01200	PF00717	Peptidase S24-like
RY45_01200	PF01726	LexA DNA binding domain
RY45_01210	PF02630	SCO1/SenC
RY45_01215	PF01554	MatE
RY45_01220	PF00588	SpoU rRNA Methylase family
RY45_01225	PF00512	His Kinase A (phospho-acceptor) domain
RY45_01225	PF00672	HAMP domain
RY45_01225	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_01230	PF00072	Response regulator receiver domain
RY45_01230	PF00486	Transcriptional regulatory protein, C terminal
RY45_01235	PF01545	Cation efflux family
RY45_01235	PF16916	RY45_01235
RY45_01240	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_01240	PF06426	Serine acetyltransferase, N-terminal
RY45_01250	PF06005	Protein of unknown function (DUF904)
RY45_01255	PF01965	DJ-1/PfpI family
RY45_01260	PF00476	DNA polymerase family A
RY45_01260	PF01367	5'-3' exonuclease, C-terminal SAM fold
RY45_01260	PF01612	3'-5' exonuclease
RY45_01260	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
RY45_01265	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_01305	PF00356	Bacterial regulatory proteins, lacI family
RY45_01305	PF13377	Periplasmic binding protein-like domain
RY45_01310	PF00703	Glycosyl hydrolases family 2
RY45_01310	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
RY45_01310	PF02837	Glycosyl hydrolases family 2, sugar binding domain
RY45_01310	PF02929	Beta galactosidase small chain
RY45_01310	PF16353	RY45_01310
RY45_01315	PF04074	Domain of unknown function (DUF386)
RY45_01320	PF13520	Amino acid permease
RY45_01325	PF01588	Putative tRNA binding domain
RY45_01330	PF13520	Amino acid permease
RY45_01335	PF13593	SBF-like CPA transporter family (DUF4137)
RY45_01340	PF03781	Sulfatase-modifying factor enzyme 1
RY45_01340	PF08241	Methyltransferase domain
RY45_01340	PF12867	DinB superfamily
RY45_01345	PF10988	Protein of unknown function (DUF2807)
RY45_01350	PF00756	Putative esterase
RY45_01355	PF00107	Zinc-binding dehydrogenase
RY45_01355	PF08240	Alcohol dehydrogenase GroES-like domain
RY45_01360	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_01360	PF03466	LysR substrate binding domain
RY45_01365	PF02653	RY45_01365
RY45_01370	PF02653	RY45_01370
RY45_01375	PF00005	ABC transporter
RY45_01380	PF02608	Basic membrane protein
RY45_01385	PF00580	UvrD/REP helicase N-terminal domain
RY45_01385	PF13361	UvrD-like helicase C-terminal domain
RY45_01405	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_01405	PF03466	LysR substrate binding domain
RY45_01425	PF14001	RY45_01425
RY45_01430	PF09351	Domain of unknown function (DUF1993)
RY45_01435	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
RY45_01440	PF07883	Cupin domain
RY45_01445	PF11769	RY45_01445
RY45_01450	PF06206	CpeT/CpcT family (DUF1001)
RY45_01455	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_01455	PF03466	LysR substrate binding domain
RY45_01460	PF01810	RY45_01460
RY45_01465	PF11144	RY45_01465
RY45_01470	PF04143	RY45_01470
RY45_01475	PF00122	E1-E2 ATPase
RY45_01475	PF00689	Cation transporting ATPase, C-terminus
RY45_01475	PF00690	Cation transporter/ATPase, N-terminus
RY45_01475	PF00702	haloacid dehalogenase-like hydrolase
RY45_01480	PF01810	RY45_01480
RY45_01485	PF02311	AraC-like ligand binding domain
RY45_01485	PF12833	Helix-turn-helix domain
RY45_01490	PF00892	EamA-like transporter family
RY45_01495	PF00171	Aldehyde dehydrogenase family
RY45_01500	PF01381	Helix-turn-helix
RY45_01500	PF07883	Cupin domain
RY45_01505	PF00202	Aminotransferase class-III
RY45_01510	PF00171	Aldehyde dehydrogenase family
RY45_01515	PF00117	Glutamine amidotransferase class-I
RY45_01520	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
RY45_01520	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
RY45_01525	PF00294	pfkB family carbohydrate kinase
RY45_01530	PF02082	Transcriptional regulator
RY45_01535	PF13187	4Fe-4S dicluster domain
RY45_01550	PF02386	Cation transport protein
RY45_01555	PF02080	TrkA-C domain
RY45_01555	PF02254	TrkA-N domain
RY45_01560	PF01029	NusB family
RY45_01560	PF01189	NOL1/NOP2/sun family
RY45_01565	PF00551	Formyl transferase
RY45_01565	PF02911	Formyl transferase, C-terminal domain
RY45_01570	PF01327	Polypeptide deformylase
RY45_01575	PF01476	LysM domain
RY45_01580	PF02481	DNA recombination-mediator protein A
RY45_01585	PF04361	RY45_01585
RY45_01590	PF01396	RY45_01590
RY45_01595	PF00731	AIR carboxylase
RY45_01600	PF01300	Telomere recombination
RY45_01605	PF01218	Coproporphyrinogen III oxidase
RY45_01610	PF01488	Shikimate / quinate 5-dehydrogenase
RY45_01610	PF08501	Shikimate dehydrogenase substrate binding domain
RY45_01615	PF07369	Protein of unknown function (DUF1488)
RY45_01620	PF01926	50S ribosome-binding GTPase
RY45_01625	PF00034	Cytochrome c
RY45_01635	PF04220	RY45_01635
RY45_01640	PF10675	RY45_01640
RY45_01645	PF04055	Radical SAM superfamily
RY45_01645	PF06969	HemN C-terminal domain
RY45_01650	PF00962	Adenosine/AMP deaminase
RY45_01655	PF00072	Response regulator receiver domain
RY45_01655	PF00158	Sigma-54 interaction domain
RY45_01655	PF02954	Bacterial regulatory protein, Fis family
RY45_01660	PF00512	His Kinase A (phospho-acceptor) domain
RY45_01660	PF00989	PAS fold
RY45_01660	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_01665	PF13511	RY45_01665
RY45_01670	PF00120	Glutamine synthetase, catalytic domain
RY45_01670	PF03951	Glutamine synthetase, beta-Grasp domain
RY45_01675	PF00009	Elongation factor Tu GTP binding domain
RY45_01675	PF00679	Elongation factor G C-terminus
RY45_01675	PF03144	Elongation factor Tu domain 2
RY45_01680	PF03631	RY45_01680
RY45_01690	PF02580	D-Tyr-tRNA(Tyr) deacylase
RY45_01695	PF01564	Spermine/spermidine synthase
RY45_01705	PF00583	Acetyltransferase (GNAT) family
RY45_01705	PF09500	Putative thioesterase (yiiD_Cterm)
RY45_01710	PF13502	RY45_01710
RY45_01715	PF00270	DEAD/DEAH box helicase
RY45_01715	PF00271	Helicase conserved C-terminal domain
RY45_01715	PF17191	RY45_01715
RY45_01720	PF13091	PLD-like domain
RY45_01725	PF02447	RY45_01725
RY45_01730	PF01202	Shikimate kinase
RY45_01735	PF00920	Dehydratase family
RY45_01740	PF01081	KDPG and KHG aldolase
RY45_01745	PF00356	Bacterial regulatory proteins, lacI family
RY45_01745	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
RY45_01750	PF00805	Pentapeptide repeats (8 copies)
RY45_01750	PF13599	Pentapeptide repeats (9 copies)
RY45_01755	PF01551	Peptidase family M23
RY45_01760	PF01676	Metalloenzyme superfamily
RY45_01760	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
RY45_01765	PF00581	Rhodanese-like domain
RY45_01770	PF02556	Preprotein translocase subunit SecB
RY45_01775	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
RY45_01775	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
RY45_01780	PF01106	NifU-like domain
RY45_01780	PF01521	Iron-sulphur cluster biosynthesis
RY45_01790	PF00561	alpha/beta hydrolase fold
RY45_01800	PF12118	RY45_01800
RY45_01810	PF00575	S1 RNA binding domain
RY45_01810	PF09371	Tex-like protein N-terminal domain
RY45_01810	PF12836	Helix-hairpin-helix motif
RY45_01810	PF16921	RY45_01810
RY45_01815	PF01272	Transcription elongation factor, GreA/GreB, C-term
RY45_01815	PF03449	Transcription elongation factor, N-terminal
RY45_01820	PF00072	Response regulator receiver domain
RY45_01820	PF00486	Transcriptional regulatory protein, C terminal
RY45_01825	PF00512	His Kinase A (phospho-acceptor) domain
RY45_01825	PF00672	HAMP domain
RY45_01825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_01830	PF00892	EamA-like transporter family
RY45_01835	PF00338	Ribosomal protein S10p/S20e
RY45_01840	PF00297	Ribosomal protein L3
RY45_01845	PF00573	Ribosomal protein L4/L1 family
RY45_01850	PF00276	Ribosomal protein L23
RY45_01855	PF00181	Ribosomal Proteins L2, RNA binding domain
RY45_01855	PF03947	Ribosomal Proteins L2, C-terminal domain
RY45_01860	PF00203	Ribosomal protein S19
RY45_01865	PF00237	Ribosomal protein L22p/L17e
RY45_01870	PF00189	Ribosomal protein S3, C-terminal domain
RY45_01870	PF07650	KH domain
RY45_01875	PF00252	Ribosomal protein L16p/L10e
RY45_01880	PF00831	Ribosomal L29 protein
RY45_01885	PF00366	Ribosomal protein S17
RY45_01890	PF00238	Ribosomal protein L14p/L23e
RY45_01895	PF17136	RY45_01895
RY45_01900	PF00281	Ribosomal protein L5
RY45_01900	PF00673	ribosomal L5P family C-terminus
RY45_01905	PF00253	Ribosomal protein S14p/S29e
RY45_01910	PF00410	Ribosomal protein S8
RY45_01915	PF00347	Ribosomal protein L6
RY45_01920	PF00861	Ribosomal L18p/L5e family
RY45_01925	PF00333	Ribosomal protein S5, N-terminal domain
RY45_01925	PF03719	Ribosomal protein S5, C-terminal domain
RY45_01930	PF00828	Ribosomal protein L18e/L15
RY45_01935	PF00344	SecY translocase
RY45_01940	PF00416	Ribosomal protein S13/S18
RY45_01945	PF00411	Ribosomal protein S11
RY45_01950	PF00163	Ribosomal protein S4/S9 N-terminal domain
RY45_01950	PF01479	S4 domain
RY45_01955	PF01000	RNA polymerase Rpb3/RpoA insert domain
RY45_01955	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
RY45_01955	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
RY45_01960	PF01196	Ribosomal protein L17
RY45_01995	PF13280	RY45_01995
RY45_02000	PF04247	RY45_02000
RY45_02005	PF00999	Sodium/hydrogen exchanger family
RY45_02005	PF02254	TrkA-N domain
RY45_02010	PF02525	Flavodoxin-like fold
RY45_02015	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_02015	PF03466	LysR substrate binding domain
RY45_02020	PF00106	short chain dehydrogenase
RY45_02030	PF04214	RY45_02030
RY45_02035	PF00326	Prolyl oligopeptidase family
RY45_02035	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
RY45_02040	PF16868	RY45_02040
RY45_02045	PF06808	RY45_02045
RY45_02045	PF11874	RY45_02045
RY45_02050	PF07947	RY45_02050
RY45_02055	PF07690	Major Facilitator Superfamily
RY45_02060	PF00529	HlyD family secretion protein
RY45_02060	PF13533	Biotin-lipoyl like
RY45_02060	PF16576	RY45_02060
RY45_02065	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_02065	PF03466	LysR substrate binding domain
RY45_02070	PF09413	Domain of unknown function (DUF2007)
RY45_02075	PF00375	Sodium:dicarboxylate symporter family
RY45_02080	PF10678	RY45_02080
RY45_02085	PF01914	RY45_02085
RY45_02090	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_02090	PF03466	LysR substrate binding domain
RY45_02095	PF02416	mttA/Hcf106 family
RY45_02100	PF04175	Protein of unknown function (DUF406)
RY45_02105	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_02105	PF01464	Transglycosylase SLT domain
RY45_02110	PF13091	PLD-like domain
RY45_02115	PF00487	RY45_02115
RY45_02120	PF00440	Bacterial regulatory proteins, tetR family
RY45_02125	PF07226	RY45_02125
RY45_02130	PF06611	RY45_02130
RY45_02135	PF03602	Conserved hypothetical protein 95
RY45_02140	PF00448	SRP54-type protein, GTPase domain
RY45_02140	PF02881	SRP54-type protein, helical bundle domain
RY45_02145	PF00005	ABC transporter
RY45_02155	PF00140	Sigma-70 factor, region 1
RY45_02155	PF04542	Sigma-70 region 2
RY45_02155	PF04545	Sigma-70, region 4
RY45_02160	PF00484	Carbonic anhydrase
RY45_02165	PF00392	Bacterial regulatory proteins, gntR family
RY45_02165	PF07702	UTRA domain
RY45_02170	PF01979	Amidohydrolase family
RY45_02175	PF00491	Arginase family
RY45_02180	PF01175	Urocanase
RY45_02180	PF17391	RY45_02180
RY45_02180	PF17392	RY45_02180
RY45_02185	PF00221	Aromatic amino acid lyase
RY45_02190	PF01699	Sodium/calcium exchanger protein
RY45_02195	PF00563	EAL domain
RY45_02200	PF00563	EAL domain
RY45_02200	PF00990	GGDEF domain
RY45_02200	PF17157	RY45_02200
RY45_02205	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_02230	PF00263	RY45_02230
RY45_02230	PF07655	RY45_02230
RY45_02235	PF13401	AAA domain
RY45_02240	PF14559	Tetratricopeptide repeat
RY45_02245	PF00437	Type II/IV secretion system protein
RY45_02245	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
RY45_02250	PF00482	Type II secretion system (T2SS), protein F
RY45_02260	PF07963	Prokaryotic N-terminal methylation motif
RY45_02265	PF07963	Prokaryotic N-terminal methylation motif
RY45_02270	PF07963	Prokaryotic N-terminal methylation motif
RY45_02275	PF07963	Prokaryotic N-terminal methylation motif
RY45_02280	PF07963	Prokaryotic N-terminal methylation motif
RY45_02295	PF06723	MreB/Mbl protein
RY45_02300	PF04085	rod shape-determining protein MreC
RY45_02305	PF04093	RY45_02305
RY45_02310	PF02545	Maf-like protein
RY45_02315	PF00575	S1 RNA binding domain
RY45_02315	PF10150	Ribonuclease E/G family
RY45_02320	PF13116	RY45_02320
RY45_02320	PF13502	RY45_02320
RY45_02325	PF07876	Stress responsive A/B Barrel Domain
RY45_02330	PF00795	Carbon-nitrogen hydrolase
RY45_02335	PF01523	Putative modulator of DNA gyrase
RY45_02340	PF01380	SIS domain
RY45_02340	PF01418	Helix-turn-helix domain, rpiR family
RY45_02345	PF09829	RY45_02345
RY45_02350	PF13609	Gram-negative porin
RY45_02355	PF00367	phosphotransferase system, EIIB
RY45_02355	PF02378	Phosphotransferase system, EIIC
RY45_02360	PF13580	SIS domain
RY45_02365	PF12762	RY45_02365
RY45_02375	PF01914	RY45_02375
RY45_02380	PF07690	Major Facilitator Superfamily
RY45_02385	PF01902	ATP-binding region
RY45_02390	PF00072	Response regulator receiver domain
RY45_02390	PF01966	HD domain
RY45_02395	PF00072	Response regulator receiver domain
RY45_02395	PF00512	His Kinase A (phospho-acceptor) domain
RY45_02395	PF01627	Hpt domain
RY45_02395	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_02400	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_02400	PF07228	Stage II sporulation protein E (SpoIIE)
RY45_02410	PF01740	STAS domain
RY45_02410	PF08447	PAS fold
RY45_02410	PF13426	PAS domain
RY45_02415	PF12833	Helix-turn-helix domain
RY45_02425	PF03767	HAD superfamily, subfamily IIIB (Acid phosphatase)
RY45_02430	PF04228	RY45_02430
RY45_02440	PF08668	HDOD domain
RY45_02445	PF13302	Acetyltransferase (GNAT) domain
RY45_02450	PF00999	Sodium/hydrogen exchanger family
RY45_02455	PF00809	Pterin binding enzyme
RY45_02455	PF02310	B12 binding domain
RY45_02455	PF02574	Homocysteine S-methyltransferase
RY45_02455	PF02607	B12 binding domain
RY45_02455	PF02965	Vitamin B12 dependent methionine synthase, activation domain
RY45_02465	PF08443	RimK-like ATP-grasp domain
RY45_02470	PF05525	RY45_02470
RY45_02480	PF00072	Response regulator receiver domain
RY45_02480	PF00486	Transcriptional regulatory protein, C terminal
RY45_02500	PF03994	RY45_02500
RY45_02505	PF03738	Glutathionylspermidine synthase preATP-grasp
RY45_02510	PF01964	ThiC family
RY45_02510	PF13667	ThiC-associated domain
RY45_02515	PF02581	Thiamine monophosphate synthase/TENI
RY45_02515	PF08543	Phosphomethylpyrimidine kinase
RY45_02520	PF00899	ThiF family
RY45_02525	PF02597	ThiS family
RY45_02530	PF05690	Thiazole biosynthesis protein ThiG
RY45_02535	PF04055	Radical SAM superfamily
RY45_02535	PF06968	Biotin and Thiamin Synthesis associated domain
RY45_02545	PF13302	Acetyltransferase (GNAT) domain
RY45_02550	PF13036	Protein of unknown function (DUF3897)
RY45_02560	PF13673	Acetyltransferase (GNAT) domain
RY45_02570	PF00990	GGDEF domain
RY45_02570	PF08448	PAS fold
RY45_02580	PF06055	RY45_02580
RY45_02585	PF13505	Outer membrane protein beta-barrel domain
RY45_02590	PF13302	Acetyltransferase (GNAT) domain
RY45_02595	PF08803	Putative mono-oxygenase ydhR
RY45_02600	PF01638	HxlR-like helix-turn-helix
RY45_02605	PF13673	Acetyltransferase (GNAT) domain
RY45_02615	PF01757	RY45_02615
RY45_02620	PF03929	RY45_02620
RY45_02625	PF00593	TonB dependent receptor
RY45_02625	PF07715	TonB-dependent Receptor Plug Domain
RY45_02630	PF04392	ABC transporter substrate binding protein
RY45_02635	PF13609	Gram-negative porin
RY45_02640	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
RY45_02645	PF03692	RY45_02645
RY45_02650	PF07219	RY45_02650
RY45_02655	PF04375	RY45_02655
RY45_02660	PF02602	Uroporphyrinogen-III synthase HemD
RY45_02665	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
RY45_02665	PF03900	Porphobilinogen deaminase, C-terminal domain
RY45_02670	PF01295	RY45_02670
RY45_02670	PF12633	RY45_02670
RY45_02675	PF02230	Phospholipase/Carboxylesterase
RY45_02680	PF01491	Frataxin-like domain
RY45_02685	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
RY45_02685	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
RY45_02690	PF01678	Diaminopimelate epimerase
RY45_02695	PF04340	Protein of unknown function, DUF484
RY45_02700	PF00589	Phage integrase family
RY45_02700	PF02899	Phage integrase, N-terminal SAM-like domain
RY45_02705	PF13419	Haloacid dehalogenase-like hydrolase
RY45_02715	PF00027	Cyclic nucleotide-binding domain
RY45_02715	PF00924	Mechanosensitive ion channel
RY45_02725	PF07722	Peptidase C26
RY45_02730	PF08282	haloacid dehalogenase-like hydrolase
RY45_02735	PF03961	RY45_02735
RY45_02740	PF13437	HlyD family secretion protein
RY45_02740	PF13533	Biotin-lipoyl like
RY45_02745	PF00005	ABC transporter
RY45_02755	PF12698	ABC-2 family transporter protein
RY45_02760	PF00994	Probable molybdopterin binding domain
RY45_02765	PF01966	HD domain
RY45_02765	PF11871	RY45_02765
RY45_02770	PF04204	Homoserine O-succinyltransferase
RY45_02775	PF05706	Cyclin-dependent kinase inhibitor 3 (CDKN3)
RY45_02780	PF01037	AsnC family
RY45_02780	PF13412	Winged helix-turn-helix DNA-binding
RY45_02785	PF00884	Sulfatase
RY45_02790	PF10387	Protein of unknown function (DUF2442)
RY45_02795	PF00593	TonB dependent receptor
RY45_02795	PF07715	TonB-dependent Receptor Plug Domain
RY45_02800	PF00128	Alpha amylase, catalytic domain
RY45_02805	PF02308	RY45_02805
RY45_02810	PF14401	RY45_02810
RY45_02815	PF00583	Acetyltransferase (GNAT) family
RY45_02820	PF12292	RY45_02820
RY45_02825	PF00106	short chain dehydrogenase
RY45_02830	PF03577	RY45_02830
RY45_02860	PF01527	Transposase
RY45_02865	PF00665	Integrase core domain
RY45_02875	PF05488	PAAR motif
RY45_02875	PF09994	Uncharacterized alpha/beta hydrolase domain (DUF2235)
RY45_02895	PF01381	Helix-turn-helix
RY45_02900	PF05015	Plasmid maintenance system killer protein
RY45_02905	PF13610	RY45_02905
RY45_02910	PF00583	Acetyltransferase (GNAT) family
RY45_02915	PF00809	Pterin binding enzyme
RY45_02920	PF00893	Small Multidrug Resistance protein
RY45_02925	PF01909	Nucleotidyltransferase domain
RY45_02925	PF13427	RY45_02925
RY45_02930	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_02940	PF13610	RY45_02940
RY45_02950	PF00440	Bacterial regulatory proteins, tetR family
RY45_02950	PF02909	Tetracyclin repressor, C-terminal all-alpha domain
RY45_02955	PF07690	Major Facilitator Superfamily
RY45_02965	PF00753	Metallo-beta-lactamase superfamily
RY45_02970	PF13701	RY45_02970
RY45_02975	PF00465	Iron-containing alcohol dehydrogenase
RY45_02980	PF00043	Glutathione S-transferase, C-terminal domain
RY45_02980	PF02798	Glutathione S-transferase, N-terminal domain
RY45_02985	PF01053	Cys/Met metabolism PLP-dependent enzyme
RY45_02990	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_02990	PF12793	RY45_02990
RY45_02995	PF13279	Thioesterase-like superfamily
RY45_03005	PF03280	Proteobacterial lipase chaperone protein
RY45_03010	PF00561	alpha/beta hydrolase fold
RY45_03020	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
RY45_03020	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
RY45_03025	PF02698	DUF218 domain
RY45_03030	PF01752	Collagenase
RY45_03040	PF00419	Fimbrial protein
RY45_03050	PF00577	Outer membrane usher protein
RY45_03050	PF13953	PapC C-terminal domain
RY45_03050	PF13954	PapC N-terminal domain
RY45_03055	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
RY45_03055	PF02753	Pili assembly chaperone PapD, C-terminal domain
RY45_03060	PF00419	Fimbrial protein
RY45_03065	PF00419	Fimbrial protein
RY45_03070	PF00486	Transcriptional regulatory protein, C terminal
RY45_03075	PF00501	AMP-binding enzyme
RY45_03075	PF13193	AMP-binding enzyme C-terminal domain
RY45_03080	PF13378	Enolase C-terminal domain-like
RY45_03085	PF00378	Enoyl-CoA hydratase/isomerase family
RY45_03090	PF12697	Alpha/beta hydrolase family
RY45_03095	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
RY45_03095	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
RY45_03095	PF16582	RY45_03095
RY45_03100	PF00425	chorismate binding enzyme
RY45_03105	PF01040	UbiA prenyltransferase family
RY45_03115	PF03413	Peptidase propeptide and YPEB domain
RY45_03115	PF03929	RY45_03115
RY45_03125	PF03692	RY45_03125
RY45_03130	PF00270	DEAD/DEAH box helicase
RY45_03130	PF00271	Helicase conserved C-terminal domain
RY45_03130	PF03880	DbpA RNA binding domain
RY45_03135	PF01773	Na+ dependent nucleoside transporter N-terminus
RY45_03135	PF07662	Na+ dependent nucleoside transporter C-terminus
RY45_03140	PF04307	RY45_03140
RY45_03145	PF01292	Prokaryotic cytochrome b561
RY45_03150	PF13670	RY45_03150
RY45_03155	PF02639	RY45_03155
RY45_03160	PF01544	CorA-like Mg2+ transporter protein
RY45_03165	PF00924	Mechanosensitive ion channel
RY45_03175	PF12339	RY45_03175
RY45_03180	PF00999	Sodium/hydrogen exchanger family
RY45_03180	PF02254	TrkA-N domain
RY45_03185	PF05068	Mannitol repressor
RY45_03190	PF01232	Mannitol dehydrogenase Rossmann domain
RY45_03190	PF08125	Mannitol dehydrogenase C-terminal domain
RY45_03195	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
RY45_03195	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
RY45_03195	PF02378	Phosphotransferase system, EIIC
RY45_03200	PF04235	RY45_03200
RY45_03200	PF07786	RY45_03200
RY45_03205	PF00440	Bacterial regulatory proteins, tetR family
RY45_03210	PF00575	S1 RNA binding domain
RY45_03210	PF00773	RNB domain
RY45_03210	PF08206	Ribonuclease B OB domain
RY45_03215	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_03215	PF03466	LysR substrate binding domain
RY45_03220	PF00765	Autoinducer synthetase
RY45_03225	PF00196	Bacterial regulatory proteins, luxR family
RY45_03225	PF03472	Autoinducer binding domain
RY45_03230	PF01810	RY45_03230
RY45_03235	PF00149	Calcineurin-like phosphoesterase
RY45_03235	PF02872	5'-nucleotidase, C-terminal domain
RY45_03240	PF05433	RY45_03240
RY45_03245	PF00583	Acetyltransferase (GNAT) family
RY45_03250	PF11756	RY45_03250
RY45_03255	PF00557	Metallopeptidase family M24
RY45_03255	PF01321	Creatinase/Prolidase N-terminal domain
RY45_03255	PF16188	RY45_03255
RY45_03255	PF16189	RY45_03255
RY45_03260	PF00392	Bacterial regulatory proteins, gntR family
RY45_03260	PF07729	FCD domain
RY45_03265	PF01293	Phosphoenolpyruvate carboxykinase
RY45_03270	PF01430	Hsp33 protein
RY45_03275	PF01479	S4 domain
RY45_03280	PF11356	Type IV pilus biogenesis
RY45_03285	PF00263	RY45_03285
RY45_03285	PF03958	Bacterial type II/III secretion system short domain
RY45_03290	PF00437	Type II/IV secretion system protein
RY45_03295	PF00482	Type II secretion system (T2SS), protein F
RY45_03300	PF07963	Prokaryotic N-terminal methylation motif
RY45_03300	PF08334	Type II secretion system (T2SS), protein G
RY45_03305	PF07963	Prokaryotic N-terminal methylation motif
RY45_03305	PF12019	Type II transport protein GspH
RY45_03310	PF02501	Type II secretion system (T2SS), protein I
RY45_03310	PF07963	Prokaryotic N-terminal methylation motif
RY45_03315	PF07963	Prokaryotic N-terminal methylation motif
RY45_03315	PF11612	Type II secretion system (T2SS), protein J
RY45_03320	PF03934	Type II secretion system (T2SS), protein K
RY45_03325	PF05134	Type II secretion system (T2SS), protein L
RY45_03325	PF12693	GspL periplasmic domain
RY45_03330	PF04612	Type II secretion system (T2SS), protein M
RY45_03335	PF01203	RY45_03335
RY45_03340	PF00196	Bacterial regulatory proteins, luxR family
RY45_03345	PF00579	tRNA synthetases class I (W and Y)
RY45_03345	PF01479	S4 domain
RY45_03350	PF00702	haloacid dehalogenase-like hydrolase
RY45_03355	PF00293	NUDIX domain
RY45_03360	PF00459	Inositol monophosphatase family
RY45_03365	PF03222	Tryptophan/tyrosine permease family
RY45_03370	PF01588	Putative tRNA binding domain
RY45_03375	PF02311	AraC-like ligand binding domain
RY45_03375	PF12833	Helix-turn-helix domain
RY45_03380	PF01340	Met Apo-repressor, MetJ
RY45_03385	PF01053	Cys/Met metabolism PLP-dependent enzyme
RY45_03390	PF00696	Amino acid kinase family
RY45_03390	PF00742	Homoserine dehydrogenase
RY45_03390	PF03447	Homoserine dehydrogenase, NAD binding domain
RY45_03395	PF00311	Phosphoenolpyruvate carboxylase
RY45_03400	PF01546	Peptidase family M20/M25/M40
RY45_03400	PF07687	Peptidase dimerisation domain
RY45_03405	PF01118	Semialdehyde dehydrogenase, NAD binding domain
RY45_03405	PF02774	Semialdehyde dehydrogenase, dimerisation domain
RY45_03410	PF00696	Amino acid kinase family
RY45_03415	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
RY45_03415	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
RY45_03420	PF00764	Arginosuccinate synthase
RY45_03425	PF00206	Lyase
RY45_03425	PF14698	Argininosuccinate lyase C-terminal
RY45_03445	PF06961	RY45_03445
RY45_03450	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_03450	PF12464	Maltose acetyltransferase
RY45_03455	PF02308	RY45_03455
RY45_03455	PF13194	RY45_03455
RY45_03460	PF13531	Bacterial extracellular solute-binding protein
RY45_03465	PF06821	Serine hydrolase
RY45_03470	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_03475	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_03480	PF00005	ABC transporter
RY45_03480	PF12857	RY45_03480
RY45_03485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_03485	PF03466	LysR substrate binding domain
RY45_03490	PF03067	Chitin binding domain
RY45_03495	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_03495	PF00672	HAMP domain
RY45_03495	PF17200	RY45_03495
RY45_03500	PF01432	Peptidase family M3
RY45_03505	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_03510	PF11308	RY45_03510
RY45_03520	PF13583	Metallo-peptidase family M12B Reprolysin-like
RY45_03525	PF03572	Peptidase family S41
RY45_03525	PF07676	WD40-like Beta Propeller Repeat
RY45_03525	PF14684	Tricorn protease C1 domain
RY45_03530	PF03734	L,D-transpeptidase catalytic domain
RY45_03535	PF03591	RY45_03535
RY45_03540	PF05437	RY45_03540
RY45_03545	PF11230	RY45_03545
RY45_03550	PF04055	Radical SAM superfamily
RY45_03550	PF13353	4Fe-4S single cluster domain
RY45_03555	PF08850	RY45_03555
RY45_03560	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_03560	PF03466	LysR substrate binding domain
RY45_03565	PF00155	Aminotransferase class I and II
RY45_03570	PF02583	Metal-sensitive transcriptional repressor
RY45_03575	PF01545	Cation efflux family
RY45_03585	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
RY45_03585	PF03714	Bacterial pullanase-associated domain
RY45_03585	PF11852	Domain of unknown function (DUF3372)
RY45_03590	PF00122	E1-E2 ATPase
RY45_03590	PF00403	Heavy-metal-associated domain
RY45_03590	PF00702	haloacid dehalogenase-like hydrolase
RY45_03595	PF08534	Redoxin
RY45_03605	PF00270	DEAD/DEAH box helicase
RY45_03605	PF00271	Helicase conserved C-terminal domain
RY45_03620	PF03372	Endonuclease/Exonuclease/phosphatase family
RY45_03625	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_03625	PF08447	PAS fold
RY45_03630	PF02517	CAAX protease self-immunity
RY45_03640	PF06062	RY45_03640
RY45_03645	PF05651	RY45_03645
RY45_03645	PF13556	PucR C-terminal helix-turn-helix domain
RY45_03650	PF02447	RY45_03650
RY45_03655	PF02595	Glycerate kinase family
RY45_03660	PF07298	RY45_03660
RY45_03665	PF00255	Glutathione peroxidase
RY45_03670	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_03670	PF03466	LysR substrate binding domain
RY45_03675	PF01773	Na+ dependent nucleoside transporter N-terminus
RY45_03675	PF07662	Na+ dependent nucleoside transporter C-terminus
RY45_03675	PF07670	Nucleoside recognition
RY45_03680	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
RY45_03680	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
RY45_03685	PF00472	RF-1 domain
RY45_03690	PF00543	Nitrogen regulatory protein P-II
RY45_03695	PF13343	Bacterial extracellular solute-binding protein
RY45_03700	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_03705	PF00005	ABC transporter
RY45_03710	PF04261	Dyp-type peroxidase family
RY45_03715	PF01316	Arginine repressor, DNA binding domain
RY45_03715	PF02863	Arginine repressor, C-terminal domain
RY45_03720	PF00005	ABC transporter
RY45_03725	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_03730	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_03735	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_03740	PF00056	lactate/malate dehydrogenase, NAD binding domain
RY45_03740	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
RY45_03750	PF08238	Sel1 repeat
RY45_03755	PF00042	Globin
RY45_03755	PF00175	Oxidoreductase NAD-binding domain
RY45_03755	PF00970	Oxidoreductase FAD-binding domain
RY45_03760	PF02082	Transcriptional regulator
RY45_03765	PF00571	CBS domain
RY45_03765	PF01595	RY45_03765
RY45_03765	PF03471	Transporter associated domain
RY45_03770	PF01578	RY45_03770
RY45_03775	PF00448	SRP54-type protein, GTPase domain
RY45_03775	PF02881	SRP54-type protein, helical bundle domain
RY45_03775	PF02978	Signal peptide binding domain
RY45_03780	PF00886	Ribosomal protein S16
RY45_03785	PF01782	RimM N-terminal domain
RY45_03785	PF05239	PRC-barrel domain
RY45_03790	PF01746	tRNA (Guanine-1)-methyltransferase
RY45_03795	PF01245	Ribosomal protein L19
RY45_03805	PF02976	DNA mismatch repair enzyme MutH
RY45_03815	PF00293	NUDIX domain
RY45_03820	PF00391	PEP-utilising enzyme, mobile domain
RY45_03820	PF01590	GAF domain
RY45_03820	PF02896	PEP-utilising enzyme, TIM barrel domain
RY45_03820	PF05524	PEP-utilising enzyme, N-terminal
RY45_03825	PF01790	RY45_03825
RY45_03830	PF00303	Thymidylate synthase
RY45_03835	PF06965	Na+/H+ antiporter 1
RY45_03845	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_03845	PF03466	LysR substrate binding domain
RY45_03850	PF01022	Bacterial regulatory protein, arsR family
RY45_03855	PF01649	Ribosomal protein S20
RY45_03860	PF03023	RY45_03860
RY45_03865	PF01687	Riboflavin kinase
RY45_03865	PF06574	FAD synthetase
RY45_03870	PF00133	tRNA synthetases class I (I, L, M and V)
RY45_03870	PF06827	Zinc finger found in FPG and IleRS
RY45_03870	PF08264	Anticodon-binding domain of tRNA
RY45_03875	PF01252	RY45_03875
RY45_03880	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
RY45_03885	PF02401	LytB protein
RY45_03890	PF07963	Prokaryotic N-terminal methylation motif
RY45_03890	PF12019	Type II transport protein GspH
RY45_03895	PF07963	Prokaryotic N-terminal methylation motif
RY45_03900	PF16074	RY45_03900
RY45_03905	PF13681	RY45_03905
RY45_03905	PF14341	RY45_03905
RY45_03910	PF05567	Neisseria PilC beta-propeller domain
RY45_03915	PF07963	Prokaryotic N-terminal methylation motif
RY45_03915	PF16732	RY45_03915
RY45_03920	PF07963	Prokaryotic N-terminal methylation motif
RY45_03920	PF16732	RY45_03920
RY45_03925	PF07963	Prokaryotic N-terminal methylation motif
RY45_03925	PF12019	Type II transport protein GspH
RY45_03940	PF07963	Prokaryotic N-terminal methylation motif
RY45_03945	PF00795	Carbon-nitrogen hydrolase
RY45_03945	PF02540	NAD synthase
RY45_03950	PF00543	Nitrogen regulatory protein P-II
RY45_03960	PF02664	S-Ribosylhomocysteinase (LuxS)
RY45_03965	PF00990	GGDEF domain
RY45_03970	PF00575	S1 RNA binding domain
RY45_03970	PF00773	RNB domain
RY45_03970	PF08206	Ribonuclease B OB domain
RY45_03970	PF08461	Ribonuclease R winged-helix domain
RY45_03975	PF11665	RY45_03975
RY45_03980	PF00588	SpoU rRNA Methylase family
RY45_03980	PF08032	RNA 2'-O ribose methyltransferase substrate binding
RY45_03985	PF00027	Cyclic nucleotide-binding domain
RY45_03990	PF13673	Acetyltransferase (GNAT) domain
RY45_03995	PF00892	EamA-like transporter family
RY45_04000	PF00892	EamA-like transporter family
RY45_04010	PF01566	RY45_04010
RY45_04015	PF01250	Ribosomal protein S6
RY45_04020	PF01084	Ribosomal protein S18
RY45_04025	PF01281	Ribosomal protein L9, N-terminal domain
RY45_04025	PF03948	Ribosomal protein L9, C-terminal domain
RY45_04030	PF00175	Oxidoreductase NAD-binding domain
RY45_04045	PF08240	Alcohol dehydrogenase GroES-like domain
RY45_04045	PF13602	Zinc-binding dehydrogenase
RY45_04050	PF09335	RY45_04050
RY45_04055	PF00675	Insulinase (Peptidase family M16)
RY45_04055	PF05193	Peptidase M16 inactive domain
RY45_04060	PF04262	Glutamate-cysteine ligase
RY45_04065	PF14486	Domain of unknown function (DUF4432)
RY45_04070	PF00501	AMP-binding enzyme
RY45_04080	PF00583	Acetyltransferase (GNAT) family
RY45_04085	PF03603	DNA polymerase III psi subunit
RY45_04090	PF07728	AAA domain (dynein-related subfamily)
RY45_04090	PF12592	Protein of unknown function (DUF3763)
RY45_04095	PF05762	VWA domain containing CoxE-like protein
RY45_04100	PF00990	GGDEF domain
RY45_04100	PF13176	Tetratricopeptide repeat
RY45_04105	PF00009	Elongation factor Tu GTP binding domain
RY45_04105	PF03144	Elongation factor Tu domain 2
RY45_04105	PF16658	RY45_04105
RY45_04110	PF12680	SnoaL-like domain
RY45_04115	PF01047	MarR family
RY45_04120	PF02627	Carboxymuconolactone decarboxylase family
RY45_04125	PF00583	Acetyltransferase (GNAT) family
RY45_04125	PF12802	MarR family
RY45_04130	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
RY45_04135	PF00440	Bacterial regulatory proteins, tetR family
RY45_04140	PF04480	Protein of unknown function (DUF559)
RY45_04145	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_04145	PF03466	LysR substrate binding domain
RY45_04150	PF04371	Porphyromonas-type peptidyl-arginine deiminase
RY45_04155	PF01425	Amidase
RY45_04160	PF05932	Tir chaperone protein (CesT) family
RY45_04170	PF00753	Metallo-beta-lactamase superfamily
RY45_04185	PF00270	DEAD/DEAH box helicase
RY45_04185	PF00271	Helicase conserved C-terminal domain
RY45_04190	PF05643	Putative bacterial lipoprotein (DUF799)
RY45_04195	PF16068	RY45_04195
RY45_04200	PF03783	Curli production assembly/transport component CsgG
RY45_04205	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_04205	PF03466	LysR substrate binding domain
RY45_04210	PF07690	Major Facilitator Superfamily
RY45_04220	PF01887	S-adenosyl-l-methionine hydroxide adenosyltransferase
RY45_04225	PF03150	Di-haem cytochrome c peroxidase
RY45_04235	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_04240	PF00445	Ribonuclease T2 family
RY45_04250	PF03060	Nitronate monooxygenase
RY45_04285	PF00293	NUDIX domain
RY45_04290	PF00512	His Kinase A (phospho-acceptor) domain
RY45_04290	PF00672	HAMP domain
RY45_04290	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_04295	PF00072	Response regulator receiver domain
RY45_04295	PF00486	Transcriptional regulatory protein, C terminal
RY45_04300	PF16576	RY45_04300
RY45_04305	PF00005	ABC transporter
RY45_04305	PF02687	RY45_04305
RY45_04305	PF12704	MacB-like periplasmic core domain
RY45_04310	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_04315	PF00005	ABC transporter
RY45_04320	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_04325	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_04330	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_04335	PF00326	Prolyl oligopeptidase family
RY45_04335	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
RY45_04340	PF05170	RY45_04340
RY45_04345	PF00583	Acetyltransferase (GNAT) family
RY45_04350	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_04355	PF03710	Glutamate-ammonia ligase adenylyltransferase
RY45_04355	PF08335	GlnD PII-uridylyltransferase
RY45_04360	PF00583	Acetyltransferase (GNAT) family
RY45_04365	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_04370	PF07885	Ion channel
RY45_04375	PF08239	Bacterial SH3 domain
RY45_04380	PF00171	Aldehyde dehydrogenase family
RY45_04380	PF01619	Proline dehydrogenase
RY45_04380	PF14850	DNA-binding domain of Proline dehydrogenase
RY45_04385	PF00293	NUDIX domain
RY45_04385	PF09297	NADH pyrophosphatase zinc ribbon domain
RY45_04395	PF00480	ROK family
RY45_04400	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
RY45_04400	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
RY45_04405	PF00162	Phosphoglycerate kinase
RY45_04410	PF01116	Fructose-bisphosphate aldolase class-II
RY45_04425	PF02683	RY45_04425
RY45_04425	PF11412	Disulphide bond corrector protein DsbC
RY45_04425	PF13899	Thioredoxin-like
RY45_04430	PF03091	CutA1 divalent ion tolerance protein
RY45_04440	PF05232	RY45_04440
RY45_04445	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_04445	PF03466	LysR substrate binding domain
RY45_04450	PF01571	Aminomethyltransferase folate-binding domain
RY45_04455	PF03937	Flavinator of succinate dehydrogenase
RY45_04465	PF00890	FAD binding domain
RY45_04465	PF02910	Fumarate reductase flavoprotein C-term
RY45_04470	PF04542	Sigma-70 region 2
RY45_04470	PF08281	Sigma-70, region 4
RY45_04475	PF03872	Anti sigma-E protein RseA, N-terminal domain
RY45_04475	PF03873	Anti sigma-E protein RseA, C-terminal domain
RY45_04480	PF03888	MucB/RseB family
RY45_04480	PF17188	RY45_04480
RY45_04485	PF04246	RY45_04485
RY45_04490	PF00009	Elongation factor Tu GTP binding domain
RY45_04490	PF00679	Elongation factor G C-terminus
RY45_04490	PF03144	Elongation factor Tu domain 2
RY45_04490	PF06421	GTP-binding protein LepA C-terminus
RY45_04495	PF00717	Peptidase S24-like
RY45_04495	PF10502	Signal peptidase, peptidase S26
RY45_04500	PF00035	Double-stranded RNA binding motif
RY45_04500	PF14622	Ribonuclease-III-like
RY45_04505	PF01926	50S ribosome-binding GTPase
RY45_04505	PF07650	KH domain
RY45_04510	PF02565	Recombination protein O C terminal
RY45_04510	PF11967	Recombination protein O N terminal
RY45_04515	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
RY45_04525	PF01116	Fructose-bisphosphate aldolase class-II
RY45_04530	PF01979	Amidohydrolase family
RY45_04535	PF03610	PTS system fructose IIA component
RY45_04540	PF03613	RY45_04540
RY45_04545	PF03609	RY45_04545
RY45_04550	PF03830	PTS system sorbose subfamily IIB component
RY45_04555	PF01380	SIS domain
RY45_04560	PF08013	Tagatose 6 phosphate kinase
RY45_04565	PF00455	RY45_04565
RY45_04565	PF08220	DeoR-like helix-turn-helix domain
RY45_04570	PF01471	Putative peptidoglycan binding domain
RY45_04570	PF01510	N-acetylmuramoyl-L-alanine amidase
RY45_04575	PF07308	RY45_04575
RY45_04580	PF00072	Response regulator receiver domain
RY45_04580	PF00512	His Kinase A (phospho-acceptor) domain
RY45_04580	PF01627	Hpt domain
RY45_04580	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_04580	PF09984	RY45_04580
RY45_04585	PF01938	TRAM domain
RY45_04585	PF05958	tRNA (Uracil-5-)-methyltransferase
RY45_04590	PF02824	TGS domain
RY45_04590	PF04607	Region found in RelA / SpoT proteins
RY45_04590	PF13291	ACT domain
RY45_04590	PF13328	HD domain
RY45_04595	PF03819	MazG nucleotide pyrophosphohydrolase domain
RY45_04600	PF00117	Glutamine amidotransferase class-I
RY45_04600	PF06418	CTP synthase N-terminus
RY45_04605	PF00113	Enolase, C-terminal TIM barrel domain
RY45_04605	PF03952	Enolase, N-terminal domain
RY45_04610	PF04977	Septum formation initiator
RY45_04615	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
RY45_04620	PF02542	YgbB family
RY45_04625	PF01142	tRNA pseudouridine synthase D (TruD)
RY45_04630	PF01975	Survival protein SurE
RY45_04635	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
RY45_04640	PF09335	RY45_04640
RY45_04645	PF01476	LysM domain
RY45_04645	PF01551	Peptidase family M23
RY45_04650	PF00140	Sigma-70 factor, region 1
RY45_04650	PF04539	Sigma-70 region 3
RY45_04650	PF04542	Sigma-70 region 2
RY45_04650	PF04545	Sigma-70, region 4
RY45_04655	PF00814	Glycoprotease family
RY45_04660	PF09424	Yqey-like protein
RY45_04665	PF01807	CHC2 zinc finger
RY45_04665	PF08275	DNA primase catalytic core, N-terminal domain
RY45_04665	PF08278	DNA primase DnaG DnaB-binding
RY45_04665	PF10410	DnaB-helicase binding domain of primase
RY45_04665	PF13662	Toprim domain
RY45_04670	PF00140	Sigma-70 factor, region 1
RY45_04670	PF03979	Sigma-70 factor, region 1
RY45_04670	PF04539	Sigma-70 region 3
RY45_04670	PF04542	Sigma-70 region 2
RY45_04670	PF04545	Sigma-70, region 4
RY45_04670	PF04546	Sigma-70, non-essential region
RY45_04685	PF00128	Alpha amylase, catalytic domain
RY45_04685	PF00801	PKD domain
RY45_04685	PF02806	Alpha amylase, C-terminal all-beta domain
RY45_04690	PF01292	Prokaryotic cytochrome b561
RY45_04695	PF07361	Cytochrome b562
RY45_04700	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
RY45_04700	PF02843	Phosphoribosylglycinamide synthetase, C domain
RY45_04700	PF02844	Phosphoribosylglycinamide synthetase, N domain
RY45_04705	PF01808	AICARFT/IMPCHase bienzyme
RY45_04705	PF02142	MGS-like domain
RY45_04710	PF00376	MerR family regulatory protein
RY45_04710	PF09278	MerR, DNA binding
RY45_04715	PF01872	RibD C-terminal domain
RY45_04720	PF03889	RY45_04720
RY45_04725	PF04055	Radical SAM superfamily
RY45_04725	PF06969	HemN C-terminal domain
RY45_04730	PF01725	Ham1 family
RY45_04735	PF07690	Major Facilitator Superfamily
RY45_04740	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
RY45_04740	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
RY45_04750	PF13302	Acetyltransferase (GNAT) domain
RY45_04755	PF13302	Acetyltransferase (GNAT) domain
RY45_04760	PF01447	Thermolysin metallopeptidase, catalytic domain
RY45_04760	PF02868	Thermolysin metallopeptidase, alpha-helical domain
RY45_04760	PF03413	Peptidase propeptide and YPEB domain
RY45_04760	PF04151	Bacterial pre-peptidase C-terminal domain
RY45_04760	PF07504	Fungalysin/Thermolysin Propeptide Motif
RY45_04765	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_04765	PF03466	LysR substrate binding domain
RY45_04770	PF07690	Major Facilitator Superfamily
RY45_04775	PF00267	Gram-negative porin
RY45_04780	PF03605	RY45_04780
RY45_04785	PF00206	Lyase
RY45_04785	PF10415	Fumarase C C-terminus
RY45_04790	PF04186	RY45_04790
RY45_04795	PF01554	MatE
RY45_04800	PF00166	Chaperonin 10 Kd subunit
RY45_04805	PF00118	TCP-1/cpn60 chaperonin family
RY45_04815	PF00563	EAL domain
RY45_04815	PF00990	GGDEF domain
RY45_04820	PF00849	RNA pseudouridylate synthase
RY45_04825	PF00176	SNF2 family N-terminal domain
RY45_04825	PF00271	Helicase conserved C-terminal domain
RY45_04825	PF12137	RNA polymerase recycling family C-terminal
RY45_04860	PF02867	Ribonucleotide reductase, barrel domain
RY45_04870	PF02562	PhoH-like protein
RY45_04870	PF13638	PIN domain
RY45_04875	PF00005	ABC transporter
RY45_04880	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_04885	PF13416	Bacterial extracellular solute-binding protein
RY45_04890	PF07238	PilZ domain
RY45_04900	PF00694	Aconitase C-terminal domain
RY45_04905	PF00330	Aconitase family (aconitate hydratase)
RY45_04910	PF00180	Isocitrate/isopropylmalate dehydrogenase
RY45_04915	PF00682	HMGL-like
RY45_04915	PF08502	LeuA allosteric (dimerisation) domain
RY45_04920	PF00440	Bacterial regulatory proteins, tetR family
RY45_04925	PF01569	PAP2 superfamily
RY45_04930	PF13528	Glycosyl transferase family 1
RY45_04935	PF00205	Thiamine pyrophosphate enzyme, central domain
RY45_04935	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
RY45_04935	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
RY45_04940	PF10369	Small subunit of acetolactate synthase
RY45_04940	PF13710	ACT domain
RY45_04945	PF01515	Phosphate acetyl/butaryl transferase
RY45_04945	PF07085	DRTGG domain
RY45_04945	PF13500	AAA domain
RY45_04950	PF00871	Acetokinase family
RY45_04955	PF04217	RY45_04955
RY45_04960	PF03887	YfbU domain
RY45_04965	PF00578	AhpC/TSA family
RY45_04970	PF13740	ACT domain
RY45_04975	PF00701	Dihydrodipicolinate synthetase family
RY45_04980	PF06804	NlpB/DapX lipoprotein
RY45_04985	PF01259	SAICAR synthetase
RY45_04990	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_04995	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_04995	PF03466	LysR substrate binding domain
RY45_05000	PF09829	RY45_05000
RY45_05005	PF01230	HIT domain
RY45_05010	PF11813	RY45_05010
RY45_05015	PF11059	RY45_05015
RY45_05020	PF00072	Response regulator receiver domain
RY45_05020	PF00512	His Kinase A (phospho-acceptor) domain
RY45_05020	PF01627	Hpt domain
RY45_05020	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_05020	PF08448	PAS fold
RY45_05025	PF01966	HD domain
RY45_05025	PF13286	Phosphohydrolase-associated domain
RY45_05035	PF00072	Response regulator receiver domain
RY45_05035	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_05035	PF00512	His Kinase A (phospho-acceptor) domain
RY45_05035	PF01627	Hpt domain
RY45_05035	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_05035	PF08448	PAS fold
RY45_05040	PF00072	Response regulator receiver domain
RY45_05040	PF00563	EAL domain
RY45_05045	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_05045	PF00672	HAMP domain
RY45_05050	PF02357	Transcription termination factor nusG
RY45_05055	PF03180	NLPA lipoprotein
RY45_05060	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_05065	PF00005	ABC transporter
RY45_05065	PF09383	NIL domain
RY45_05080	PF00480	ROK family
RY45_05085	PF08331	RY45_05085
RY45_05085	PF13484	RY45_05085
RY45_05090	PF01256	Carbohydrate kinase
RY45_05090	PF03853	YjeF-related protein N-terminus
RY45_05095	PF02367	Uncharacterised P-loop hydrolase UPF0079
RY45_05100	PF01476	LysM domain
RY45_05100	PF01520	N-acetylmuramoyl-L-alanine amidase
RY45_05100	PF11741	AMIN domain
RY45_05105	PF01119	DNA mismatch repair protein, C-terminal domain
RY45_05105	PF08676	MutL C terminal dimerisation domain
RY45_05105	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_05110	PF01715	IPP transferase
RY45_05115	PF17209	RY45_05115
RY45_05120	PF01926	50S ribosome-binding GTPase
RY45_05120	PF13167	RY45_05120
RY45_05120	PF16360	RY45_05120
RY45_05125	PF01145	SPFH domain / Band 7 family
RY45_05125	PF12221	RY45_05125
RY45_05130	PF01145	SPFH domain / Band 7 family
RY45_05135	PF09838	RY45_05135
RY45_05140	PF00348	Polyprenyl synthetase
RY45_05150	PF01016	Ribosomal L27 protein
RY45_05155	PF01018	GTP1/OBG
RY45_05155	PF01926	50S ribosome-binding GTPase
RY45_05160	PF07670	Nucleoside recognition
RY45_05165	PF00501	AMP-binding enzyme
RY45_05165	PF13193	AMP-binding enzyme C-terminal domain
RY45_05180	PF13487	HD domain
RY45_05185	PF00296	Luciferase-like monooxygenase
RY45_05190	PF01381	Helix-turn-helix
RY45_05190	PF13239	RY45_05190
RY45_05200	PF00149	Calcineurin-like phosphoesterase
RY45_05205	PF04379	Protein of unknown function (DUF525)
RY45_05210	PF00398	Ribosomal RNA adenine dimethylase
RY45_05215	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
RY45_05220	PF00639	PPIC-type PPIASE domain
RY45_05220	PF09312	SurA N-terminal domain
RY45_05225	PF03968	OstA-like protein
RY45_05225	PF04453	Organic solvent tolerance protein
RY45_05230	PF01636	Phosphotransferase enzyme family
RY45_05235	PF00483	Nucleotidyl transferase
RY45_05240	PF00226	DnaJ domain
RY45_05240	PF05099	Tellurite resistance protein TerB
RY45_05245	PF00860	Permease family
RY45_05255	PF00005	ABC transporter
RY45_05255	PF12848	ABC transporter
RY45_05260	PF00027	Cyclic nucleotide-binding domain
RY45_05265	PF10688	RY45_05265
RY45_05270	PF01048	Phosphorylase superfamily
RY45_05275	PF01464	Transglycosylase SLT domain
RY45_05280	PF01391	Collagen triple helix repeat (20 copies)
RY45_05290	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_05290	PF03466	LysR substrate binding domain
RY45_05295	PF01048	Phosphorylase superfamily
RY45_05300	PF01773	Na+ dependent nucleoside transporter N-terminus
RY45_05300	PF07662	Na+ dependent nucleoside transporter C-terminus
RY45_05300	PF07670	Nucleoside recognition
RY45_05305	PF01791	DeoC/LacD family aldolase
RY45_05310	PF00892	EamA-like transporter family
RY45_05315	PF01370	NAD dependent epimerase/dehydratase family
RY45_05320	PF02588	RY45_05320
RY45_05325	PF00005	ABC transporter
RY45_05330	PF01032	FecCD transport family
RY45_05335	PF01497	Periplasmic binding protein
RY45_05340	PF06228	Haem utilisation ChuX/HutX
RY45_05345	PF01243	Pyridoxamine 5'-phosphate oxidase
RY45_05355	PF00857	Isochorismatase family
RY45_05360	PF04187	Protein of unknown function, DUF399
RY45_05365	PF00593	TonB dependent receptor
RY45_05365	PF07715	TonB-dependent Receptor Plug Domain
RY45_05370	PF12832	MFS_1 like family
RY45_05375	PF13443	Cro/C1-type HTH DNA-binding domain
RY45_05380	PF11188	RY45_05380
RY45_05385	PF00072	Response regulator receiver domain
RY45_05385	PF00512	His Kinase A (phospho-acceptor) domain
RY45_05385	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_05385	PF12860	RY45_05385
RY45_05390	PF00704	Glycosyl hydrolases family 18
RY45_05390	PF08329	Chitinase A, N-terminal domain
RY45_05395	PF10462	Peptidase M66
RY45_05400	PF00182	Chitinase class I
RY45_05400	PF02839	Carbohydrate binding domain
RY45_05405	PF08241	Methyltransferase domain
RY45_05410	PF00027	Cyclic nucleotide-binding domain
RY45_05410	PF00325	Bacterial regulatory proteins, crp family
RY45_05415	PF02566	OsmC-like protein
RY45_05420	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
RY45_05425	PF13590	Domain of unknown function (DUF4136)
RY45_05430	PF00485	Phosphoribulokinase / Uridine kinase family
RY45_05435	PF00893	Small Multidrug Resistance protein
RY45_05440	PF00892	EamA-like transporter family
RY45_05445	PF02366	RY45_05445
RY45_05450	PF01522	Polysaccharide deacetylase
RY45_05455	PF00551	Formyl transferase
RY45_05455	PF01370	NAD dependent epimerase/dehydratase family
RY45_05455	PF02911	Formyl transferase, C-terminal domain
RY45_05460	PF00535	Glycosyl transferase family 2
RY45_05465	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
RY45_05470	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
RY45_05470	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
RY45_05470	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
RY45_05475	PF06794	Uncharacterised protein family (UPF0270)
RY45_05480	PF00990	GGDEF domain
RY45_05480	PF17178	RY45_05480
RY45_05485	PF00561	alpha/beta hydrolase fold
RY45_05490	PF00072	Response regulator receiver domain
RY45_05490	PF01584	CheW-like domain
RY45_05500	PF09526	RY45_05500
RY45_05505	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
RY45_05510	PF04102	SlyX
RY45_05515	PF00400	WD domain, G-beta repeat
RY45_05520	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
RY45_05520	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
RY45_05525	PF00072	Response regulator receiver domain
RY45_05525	PF00158	Sigma-54 interaction domain
RY45_05525	PF02954	Bacterial regulatory protein, Fis family
RY45_05530	PF13424	Tetratricopeptide repeat
RY45_05540	PF11169	RY45_05540
RY45_05545	PF00149	Calcineurin-like phosphoesterase
RY45_05545	PF02872	5'-nucleotidase, C-terminal domain
RY45_05550	PF00563	EAL domain
RY45_05550	PF12792	RY45_05550
RY45_05555	PF04280	Tim44-like domain
RY45_05560	PF00772	DnaB-like helicase N terminal domain
RY45_05560	PF03796	DnaB-like helicase C terminal domain
RY45_05565	PF00842	Alanine racemase, C-terminal domain
RY45_05565	PF01168	Alanine racemase, N-terminal domain
RY45_05570	PF12838	4Fe-4S dicluster domain
RY45_05575	PF01136	RY45_05575
RY45_05575	PF16325	RY45_05575
RY45_05580	PF00563	EAL domain
RY45_05590	PF04449	CS1 type fimbrial major subunit
RY45_05595	PF15976	RY45_05595
RY45_05595	PF16967	RY45_05595
RY45_05600	PF00072	Response regulator receiver domain
RY45_05600	PF00196	Bacterial regulatory proteins, luxR family
RY45_05605	PF00072	Response regulator receiver domain
RY45_05605	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_05605	PF00512	His Kinase A (phospho-acceptor) domain
RY45_05605	PF01627	Hpt domain
RY45_05605	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_05630	PF00266	Aminotransferase class-V
RY45_05635	PF00072	Response regulator receiver domain
RY45_05635	PF01339	CheB methylesterase
RY45_05640	PF03975	CheD chemotactic sensory transduction
RY45_05645	PF01739	CheR methyltransferase, SAM binding domain
RY45_05645	PF03705	CheR methyltransferase, all-alpha domain
RY45_05650	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_05650	PF13426	PAS domain
RY45_05655	PF01584	CheW-like domain
RY45_05660	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_05660	PF12729	RY45_05660
RY45_05665	PF01584	CheW-like domain
RY45_05665	PF01627	Hpt domain
RY45_05665	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_05665	PF02895	Signal transducing histidine kinase, homodimeric domain
RY45_05670	PF13466	STAS domain
RY45_05675	PF00072	Response regulator receiver domain
RY45_05680	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_05685	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
RY45_05685	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
RY45_05690	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_05690	PF03466	LysR substrate binding domain
RY45_05695	PF01810	RY45_05695
RY45_05700	PF01136	RY45_05700
RY45_05700	PF12392	RY45_05700
RY45_05710	PF06906	RY45_05710
RY45_05720	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
RY45_05720	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
RY45_05725	PF00730	HhH-GPD superfamily base excision DNA repair protein
RY45_05725	PF02805	Metal binding domain of Ada
RY45_05725	PF06029	AlkA N-terminal domain
RY45_05725	PF12833	Helix-turn-helix domain
RY45_05735	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
RY45_05740	PF01713	Smr domain
RY45_05745	PF01963	RY45_05745
RY45_05750	PF08921	Domain of unknown function (DUF1904)
RY45_05755	PF00106	short chain dehydrogenase
RY45_05760	PF03573	outer membrane porin, OprD family
RY45_05765	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_05770	PF00892	EamA-like transporter family
RY45_05775	PF00596	Class II Aldolase and Adducin N-terminal domain
RY45_05780	PF00465	Iron-containing alcohol dehydrogenase
RY45_05795	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
RY45_05795	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
RY45_05800	PF06134	L-rhamnose isomerase (RhaA)
RY45_05805	PF06379	RY45_05805
RY45_05810	PF05336	Domain of unknown function (DUF718)
RY45_05820	PF16538	RY45_05820
RY45_05820	PF16539	RY45_05820
RY45_05820	PF16548	RY45_05820
RY45_05830	PF02169	LPP20 lipoprotein
RY45_05835	PF00800	Prephenate dehydratase
RY45_05835	PF01817	Chorismate mutase type II
RY45_05840	PF13419	Haloacid dehalogenase-like hydrolase
RY45_05855	PF11355	RY45_05855
RY45_05865	PF04463	RY45_05865
RY45_05865	PF08349	RY45_05865
RY45_05870	PF13411	MerR HTH family regulatory protein
RY45_05875	PF00875	DNA photolyase
RY45_05875	PF03441	FAD binding domain of DNA photolyase
RY45_05880	PF12680	SnoaL-like domain
RY45_05885	PF00106	short chain dehydrogenase
RY45_05890	PF01593	Flavin containing amine oxidoreductase
RY45_05895	PF07103	RY45_05895
RY45_05900	PF02353	Mycolic acid cyclopropane synthetase
RY45_05905	PF11086	RY45_05905
RY45_05910	PF09493	RY45_05910
RY45_05915	PF16036	RY45_05915
RY45_05920	PF12915	RY45_05920
RY45_05925	PF00210	Ferritin-like domain
RY45_05930	PF03063	Prismane/CO dehydrogenase family
RY45_05935	PF00111	2Fe-2S iron-sulfur cluster binding domain
RY45_05935	PF00175	Oxidoreductase NAD-binding domain
RY45_05935	PF00970	Oxidoreductase FAD-binding domain
RY45_05940	PF16363	RY45_05940
RY45_05945	PF13462	Thioredoxin
RY45_05955	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
RY45_05955	PF08479	POTRA domain, ShlB-type
RY45_05955	PF17287	RY45_05955
RY45_05960	PF05594	RY45_05960
RY45_05960	PF05860	haemagglutination activity domain
RY45_05970	PF04830	RY45_05970
RY45_05970	PF13332	RY45_05970
RY45_06005	PF00196	Bacterial regulatory proteins, luxR family
RY45_06005	PF03472	Autoinducer binding domain
RY45_06010	PF05638	Protein of unknown function (DUF796)
RY45_06015	PF05954	Phage late control gene D protein (GPD)
RY45_06020	PF13503	RY45_06020
RY45_06040	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_06040	PF03466	LysR substrate binding domain
RY45_06045	PF03306	Alpha-acetolactate decarboxylase
RY45_06050	PF00205	Thiamine pyrophosphate enzyme, central domain
RY45_06050	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
RY45_06050	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
RY45_06055	PF01965	DJ-1/PfpI family
RY45_06060	PF02558	Ketopantoate reductase PanE/ApbA
RY45_06060	PF08546	Ketopantoate reductase PanE/ApbA C terminal
RY45_06065	PF04461	Protein of unknown function (DUF520)
RY45_06070	PF03502	Nucleoside-specific channel-forming protein, Tsx
RY45_06075	PF13000	RY45_06075
RY45_06085	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
RY45_06090	PF03923	RY45_06090
RY45_06095	PF05175	Methyltransferase small domain
RY45_06100	PF01722	BolA-like protein
RY45_06105	PF05896	RY45_06105
RY45_06105	PF11973	RY45_06105
RY45_06110	PF03116	RY45_06110
RY45_06115	PF04205	FMN-binding domain
RY45_06120	PF02508	RY45_06120
RY45_06125	PF02508	RY45_06125
RY45_06130	PF00111	2Fe-2S iron-sulfur cluster binding domain
RY45_06130	PF00175	Oxidoreductase NAD-binding domain
RY45_06130	PF00970	Oxidoreductase FAD-binding domain
RY45_06135	PF02424	ApbE family
RY45_06140	PF04400	RY45_06140
RY45_06150	PF00817	impB/mucB/samB family
RY45_06150	PF11798	IMS family HHH motif
RY45_06150	PF11799	impB/mucB/samB family C-terminal domain
RY45_06155	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_06155	PF00672	HAMP domain
RY45_06155	PF02743	Cache domain
RY45_06160	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_06160	PF03466	LysR substrate binding domain
RY45_06165	PF12697	Alpha/beta hydrolase family
RY45_06170	PF04241	RY45_06170
RY45_06175	PF01728	FtsJ-like methyltransferase
RY45_06185	PF00180	Isocitrate/isopropylmalate dehydrogenase
RY45_06190	PF01367	5'-3' exonuclease, C-terminal SAM fold
RY45_06190	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
RY45_06195	PF03641	Possible lysine decarboxylase
RY45_06195	PF11892	Domain of unknown function (DUF3412)
RY45_06195	PF14793	Domain of unknown function (DUF4478)
RY45_06200	PF00990	GGDEF domain
RY45_06210	PF14489	QueF-like protein
RY45_06210	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
RY45_06215	PF07348	Syd protein (SUKH-2)
RY45_06220	PF10071	RY45_06220
RY45_06230	PF10982	Protein of unknown function (DUF2789)
RY45_06235	PF11743	RY45_06235
RY45_06240	PF12069	RY45_06240
RY45_06245	PF04287	tRNA pseudouridine synthase C
RY45_06250	PF00849	RNA pseudouridylate synthase
RY45_06255	PF00258	Flavodoxin
RY45_06260	PF02264	LamB porin
RY45_06265	PF07148	RY45_06265
RY45_06270	PF00367	phosphotransferase system, EIIB
RY45_06270	PF02378	Phosphotransferase system, EIIC
RY45_06275	PF11944	RY45_06275
RY45_06280	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_06280	PF14602	Hexapeptide repeat of succinyl-transferase
RY45_06280	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
RY45_06285	PF01909	Nucleotidyltransferase domain
RY45_06285	PF01966	HD domain
RY45_06285	PF08335	GlnD PII-uridylyltransferase
RY45_06290	PF00557	Metallopeptidase family M24
RY45_06295	PF00318	Ribosomal protein S2
RY45_06300	PF00889	Elongation factor TS
RY45_06305	PF00696	Amino acid kinase family
RY45_06310	PF01765	Ribosome recycling factor
RY45_06315	PF01255	Putative undecaprenyl diphosphate synthase
RY45_06320	PF01148	Cytidylyltransferase family
RY45_06325	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
RY45_06325	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
RY45_06325	PF13288	DXP reductoisomerase C-terminal domain
RY45_06330	PF02163	Peptidase family M50
RY45_06335	PF01103	Surface antigen
RY45_06335	PF07244	Surface antigen variable number repeat
RY45_06340	PF03938	Outer membrane protein (OmpH-like)
RY45_06345	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_06345	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
RY45_06350	PF07977	FabA-like domain
RY45_06355	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_06355	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
RY45_06360	PF02684	RY45_06360
RY45_06365	PF01351	Ribonuclease HII
RY45_06370	PF01336	OB-fold nucleic acid binding domain
RY45_06370	PF02811	PHP domain
RY45_06370	PF07733	Bacterial DNA polymerase III alpha subunit
RY45_06370	PF14579	Helix-hairpin-helix motif
RY45_06375	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
RY45_06380	PF00486	Transcriptional regulatory protein, C terminal
RY45_06385	PF13520	Amino acid permease
RY45_06390	PF01276	Orn/Lys/Arg decarboxylase, major domain
RY45_06390	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
RY45_06390	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
RY45_06395	PF08543	Phosphomethylpyrimidine kinase
RY45_06400	PF01554	MatE
RY45_06405	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_06405	PF03466	LysR substrate binding domain
RY45_06410	PF03222	Tryptophan/tyrosine permease family
RY45_06415	PF12706	Beta-lactamase superfamily domain
RY45_06420	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_06420	PF03466	LysR substrate binding domain
RY45_06425	PF12697	Alpha/beta hydrolase family
RY45_06430	PF01738	Dienelactone hydrolase family
RY45_06435	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_06435	PF03466	LysR substrate binding domain
RY45_06440	PF13520	Amino acid permease
RY45_06445	PF13302	Acetyltransferase (GNAT) domain
RY45_06450	PF00005	ABC transporter
RY45_06455	PF16743	RY45_06455
RY45_06460	PF01431	Peptidase family M13
RY45_06460	PF05649	Peptidase family M13
RY45_06465	PF01171	PP-loop family
RY45_06465	PF09179	TilS substrate binding domain
RY45_06465	PF11734	TilS substrate C-terminal domain
RY45_06470	PF00990	GGDEF domain
RY45_06480	PF01734	Patatin-like phospholipase
RY45_06485	PF12146	Putative lysophospholipase
RY45_06490	PF00440	Bacterial regulatory proteins, tetR family
RY45_06495	PF00072	Response regulator receiver domain
RY45_06495	PF00196	Bacterial regulatory proteins, luxR family
RY45_06500	PF13417	Glutathione S-transferase, N-terminal domain
RY45_06505	PF00128	Alpha amylase, catalytic domain
RY45_06515	PF04138	RY45_06515
RY45_06520	PF00535	Glycosyl transferase family 2
RY45_06530	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_06535	PF01471	Putative peptidoglycan binding domain
RY45_06535	PF03734	L,D-transpeptidase catalytic domain
RY45_06540	PF05951	RY45_06540
RY45_06550	PF03458	RY45_06550
RY45_06555	PF07264	Etoposide-induced protein 2
RY45_06565	PF04354	ZipA, C-terminal FtsZ-binding domain
RY45_06570	PF00533	BRCA1 C Terminus (BRCT) domain
RY45_06570	PF01653	NAD-dependent DNA ligase adenylation domain
RY45_06570	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
RY45_06570	PF03120	NAD-dependent DNA ligase OB-fold domain
RY45_06570	PF12826	Helix-hairpin-helix motif
RY45_06570	PF14520	Helix-hairpin-helix domain
RY45_06575	PF04392	ABC transporter substrate binding protein
RY45_06580	PF03477	ATP cone domain
RY45_06580	PF13597	Anaerobic ribonucleoside-triphosphate reductase
RY45_06585	PF13353	4Fe-4S single cluster domain
RY45_06590	PF01679	RY45_06590
RY45_06595	PF03544	Gram-negative bacterial TonB protein C-terminal
RY45_06600	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
RY45_06605	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_06610	PF11168	RY45_06610
RY45_06610	PF13515	RY45_06610
RY45_06615	PF13437	HlyD family secretion protein
RY45_06615	PF13533	Biotin-lipoyl like
RY45_06620	PF01047	MarR family
RY45_06625	PF03390	RY45_06625
RY45_06630	PF00390	Malic enzyme, N-terminal domain
RY45_06630	PF03949	Malic enzyme, NAD binding domain
RY45_06635	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_06635	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
RY45_06635	PF17203	RY45_06635
RY45_06640	PF00072	Response regulator receiver domain
RY45_06640	PF12431	RY45_06640
RY45_06645	PF00892	EamA-like transporter family
RY45_06650	PF02311	AraC-like ligand binding domain
RY45_06650	PF12833	Helix-turn-helix domain
RY45_06655	PF00171	Aldehyde dehydrogenase family
RY45_06660	PF00158	Sigma-54 interaction domain
RY45_06660	PF01590	GAF domain
RY45_06660	PF02954	Bacterial regulatory protein, Fis family
RY45_06665	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
RY45_06665	PF02770	Acyl-CoA dehydrogenase, middle domain
RY45_06665	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
RY45_06670	PF02515	CoA-transferase family III
RY45_06675	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_06680	PF00072	Response regulator receiver domain
RY45_06680	PF00486	Transcriptional regulatory protein, C terminal
RY45_06685	PF00512	His Kinase A (phospho-acceptor) domain
RY45_06685	PF00989	PAS fold
RY45_06685	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_06685	PF11808	RY45_06685
RY45_06690	PF12849	PBP superfamily domain
RY45_06695	PF01435	Peptidase family M48
RY45_06700	PF00583	Acetyltransferase (GNAT) family
RY45_06705	PF00480	ROK family
RY45_06710	PF03932	CutC family
RY45_06720	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
RY45_06720	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
RY45_06725	PF00005	ABC transporter
RY45_06730	PF01061	RY45_06730
RY45_06735	PF11006	RY45_06735
RY45_06740	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_06745	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_06750	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_06755	PF00005	ABC transporter
RY45_06760	PF06526	Protein of unknown function (DUF1107)
RY45_06765	PF00293	NUDIX domain
RY45_06775	PF08534	Redoxin
RY45_06780	PF01699	Sodium/calcium exchanger protein
RY45_06785	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
RY45_06785	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
RY45_06790	PF01235	RY45_06790
RY45_06795	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
RY45_06795	PF08479	POTRA domain, ShlB-type
RY45_06795	PF17287	RY45_06795
RY45_06805	PF04830	RY45_06805
RY45_06805	PF13332	RY45_06805
RY45_06820	PF00860	Permease family
RY45_06825	PF00990	GGDEF domain
RY45_06830	PF10692	Protein of unknown function (DUF2498)
RY45_06835	PF01554	MatE
RY45_06840	PF12833	Helix-turn-helix domain
RY45_06845	PF00390	Malic enzyme, N-terminal domain
RY45_06845	PF03949	Malic enzyme, NAD binding domain
RY45_06850	PF00691	OmpA family
RY45_06850	PF01389	OmpA-like transmembrane domain
RY45_06855	PF00691	OmpA family
RY45_06855	PF01389	OmpA-like transmembrane domain
RY45_06860	PF00691	OmpA family
RY45_06860	PF01389	OmpA-like transmembrane domain
RY45_06870	PF01381	Helix-turn-helix
RY45_06875	PF00209	Sodium:neurotransmitter symporter family
RY45_06880	PF01734	Patatin-like phospholipase
RY45_06885	PF00990	GGDEF domain
RY45_06885	PF02743	Cache domain
RY45_06890	PF16576	RY45_06890
RY45_06895	PF00873	AcrB/AcrD/AcrF family
RY45_06905	PF04055	Radical SAM superfamily
RY45_06905	PF08497	RY45_06905
RY45_06905	PF11842	RY45_06905
RY45_06920	PF05163	DinB family
RY45_06925	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
RY45_06935	PF02075	Crossover junction endodeoxyribonuclease RuvC
RY45_06940	PF00230	Major intrinsic protein
RY45_06945	PF01464	Transglycosylase SLT domain
RY45_06950	PF00128	Alpha amylase, catalytic domain
RY45_06955	PF01551	Peptidase family M23
RY45_06960	PF13673	Acetyltransferase (GNAT) domain
RY45_06965	PF07273	Protein of unknown function (DUF1439)
RY45_06970	PF13091	PLD-like domain
RY45_06975	PF06097	RY45_06975
RY45_06980	PF00551	Formyl transferase
RY45_06980	PF01842	ACT domain
RY45_06985	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
RY45_06990	PF04728	Lipoprotein leucine-zipper
RY45_06995	PF00085	Thioredoxin
RY45_06995	PF14559	Tetratricopeptide repeat
RY45_06995	PF14561	Tetratricopeptide repeat
RY45_07000	PF01648	4'-phosphopantetheinyl transferase superfamily
RY45_07005	PF00877	NlpC/P60 family
RY45_07010	PF05971	Protein of unknown function (DUF890)
RY45_07015	PF01575	MaoC like domain
RY45_07020	PF04338	Protein of unknown function, DUF481
RY45_07025	PF03734	L,D-transpeptidase catalytic domain
RY45_07035	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_07035	PF03466	LysR substrate binding domain
RY45_07040	PF02634	FdhD/NarQ family
RY45_07045	PF00384	Molybdopterin oxidoreductase
RY45_07045	PF01568	Molydopterin dinucleotide binding domain
RY45_07075	PF07520	RY45_07075
RY45_07080	PF10139	RY45_07080
RY45_07095	PF00005	ABC transporter
RY45_07100	PF02687	RY45_07100
RY45_07100	PF12704	MacB-like periplasmic core domain
RY45_07105	PF03781	Sulfatase-modifying factor enzyme 1
RY45_07115	PF00665	Integrase core domain
RY45_07115	PF13276	RY45_07115
RY45_07130	PF00440	Bacterial regulatory proteins, tetR family
RY45_07135	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
RY45_07135	PF02770	Acyl-CoA dehydrogenase, middle domain
RY45_07135	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
RY45_07135	PF09317	RY45_07135
RY45_07140	PF00873	AcrB/AcrD/AcrF family
RY45_07145	PF16576	RY45_07145
RY45_07150	PF00224	Pyruvate kinase, barrel domain
RY45_07150	PF02887	Pyruvate kinase, alpha/beta domain
RY45_07155	PF01380	SIS domain
RY45_07155	PF01418	Helix-turn-helix domain, rpiR family
RY45_07160	PF02685	Glucokinase
RY45_07165	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_07170	PF00072	Response regulator receiver domain
RY45_07170	PF00486	Transcriptional regulatory protein, C terminal
RY45_07175	PF00919	Uncharacterized protein family UPF0004
RY45_07175	PF01938	TRAM domain
RY45_07175	PF04055	Radical SAM superfamily
RY45_07180	PF01966	HD domain
RY45_07190	PF02049	RY45_07190
RY45_07195	PF01514	Secretory protein of YscJ/FliF family
RY45_07195	PF08345	RY45_07195
RY45_07200	PF01706	FliG C-terminal domain
RY45_07200	PF14841	FliG middle domain
RY45_07200	PF14842	FliG N-terminal domain
RY45_07205	PF02108	RY45_07205
RY45_07210	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
RY45_07215	PF02050	Flagellar FliJ protein
RY45_07220	PF02120	Flagellar hook-length control protein FliK
RY45_07225	PF03748	RY45_07225
RY45_07230	PF01052	Surface presentation of antigens (SPOA)
RY45_07230	PF02154	Flagellar motor switch protein FliM
RY45_07235	PF01052	Surface presentation of antigens (SPOA)
RY45_07240	PF04347	RY45_07240
RY45_07245	PF00813	RY45_07245
RY45_07250	PF01313	RY45_07250
RY45_07255	PF01311	RY45_07255
RY45_07260	PF01312	FlhB HrpN YscU SpaS Family
RY45_07265	PF00771	FHIPEP family
RY45_07270	PF00448	SRP54-type protein, GTPase domain
RY45_07275	PF10609	ParA/MinD ATPase like
RY45_07280	PF04539	Sigma-70 region 3
RY45_07280	PF04542	Sigma-70 region 2
RY45_07280	PF04545	Sigma-70, region 4
RY45_07285	PF00072	Response regulator receiver domain
RY45_07290	PF04344	Chemotaxis phosphatase, CheZ
RY45_07295	PF01584	CheW-like domain
RY45_07295	PF01627	Hpt domain
RY45_07295	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_07295	PF02895	Signal transducing histidine kinase, homodimeric domain
RY45_07300	PF00072	Response regulator receiver domain
RY45_07300	PF01339	CheB methylesterase
RY45_07305	PF01618	RY45_07305
RY45_07310	PF00691	OmpA family
RY45_07310	PF13677	RY45_07310
RY45_07315	PF13614	AAA domain
RY45_07320	PF01584	CheW-like domain
RY45_07325	PF01584	CheW-like domain
RY45_07330	PF10975	RY45_07330
RY45_07335	PF00005	ABC transporter
RY45_07340	PF03379	RY45_07340
RY45_07345	PF01578	RY45_07345
RY45_07350	PF04995	RY45_07350
RY45_07355	PF03100	CcmE
RY45_07360	PF01578	RY45_07360
RY45_07360	PF16327	RY45_07360
RY45_07365	PF08534	Redoxin
RY45_07370	PF03918	Cytochrome C biogenesis protein
RY45_07375	PF14559	Tetratricopeptide repeat
RY45_07380	PF04333	RY45_07380
RY45_07385	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
RY45_07385	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
RY45_07390	PF00462	Glutaredoxin
RY45_07395	PF01189	NOL1/NOP2/sun family
RY45_07400	PF13583	Metallo-peptidase family M12B Reprolysin-like
RY45_07410	PF01243	Pyridoxamine 5'-phosphate oxidase
RY45_07410	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
RY45_07415	PF00043	Glutathione S-transferase, C-terminal domain
RY45_07415	PF13417	Glutathione S-transferase, N-terminal domain
RY45_07420	PF13302	Acetyltransferase (GNAT) domain
RY45_07425	PF13527	Acetyltransferase (GNAT) domain
RY45_07440	PF08007	Cupin superfamily protein
RY45_07445	PF00206	Lyase
RY45_07445	PF08328	Adenylosuccinate lyase C-terminal
RY45_07450	PF04356	Protein of unknown function (DUF489)
RY45_07455	PF03054	tRNA methyl transferase
RY45_07460	PF00293	NUDIX domain
RY45_07465	PF00849	RNA pseudouridylate synthase
RY45_07470	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
RY45_07470	PF00381	PTS HPr component phosphorylation site
RY45_07475	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
RY45_07480	PF07690	Major Facilitator Superfamily
RY45_07495	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
RY45_07495	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
RY45_07495	PF02378	Phosphotransferase system, EIIC
RY45_07510	PF13580	SIS domain
RY45_07520	PF13411	MerR HTH family regulatory protein
RY45_07525	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
RY45_07530	PF00356	Bacterial regulatory proteins, lacI family
RY45_07530	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
RY45_07535	PF00367	phosphotransferase system, EIIB
RY45_07535	PF02378	Phosphotransferase system, EIIC
RY45_07540	PF00155	Aminotransferase class I and II
RY45_07555	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
RY45_07555	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
RY45_07555	PF02378	Phosphotransferase system, EIIC
RY45_07565	PF01238	Phosphomannose isomerase type I
RY45_07570	PF12833	Helix-turn-helix domain
RY45_07575	PF00180	Isocitrate/isopropylmalate dehydrogenase
RY45_07580	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_07585	PF02447	RY45_07585
RY45_07590	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_07590	PF03466	LysR substrate binding domain
RY45_07600	PF04320	RY45_07600
RY45_07610	PF02384	N-6 DNA Methylase
RY45_07610	PF12161	HsdM N-terminal domain
RY45_07615	PF00271	Helicase conserved C-terminal domain
RY45_07615	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
RY45_07615	PF04851	Type III restriction enzyme, res subunit
RY45_07615	PF08463	RY45_07615
RY45_07620	PF04471	Restriction endonuclease
RY45_07620	PF14338	RY45_07620
RY45_07625	PF00589	Phage integrase family
RY45_07625	PF12167	RY45_07625
RY45_07625	PF13102	Phage integrase SAM-like domain
RY45_07650	PF14359	Domain of unknown function (DUF4406)
RY45_07685	PF04381	Putative exonuclease, RdgC
RY45_07690	PF05869	RY45_07690
RY45_07715	PF12684	PDDEXK-like domain of unknown function (DUF3799)
RY45_07750	PF13443	Cro/C1-type HTH DNA-binding domain
RY45_07755	PF14549	DNA-binding transcriptional regulator Cro
RY45_07770	PF04492	RY45_07770
RY45_07775	PF00772	DnaB-like helicase N terminal domain
RY45_07775	PF03796	DnaB-like helicase C terminal domain
RY45_07790	PF05772	NinB protein
RY45_07800	PF16786	RY45_07800
RY45_07825	PF11686	RY45_07825
RY45_07835	PF10746	RY45_07835
RY45_07840	PF05838	Glycosyl hydrolase 108
RY45_07840	PF09374	Predicted Peptidoglycan domain
RY45_07935	PF03374	RY45_07935
RY45_07935	PF09669	RY45_07935
RY45_07960	PF01668	SmpB protein
RY45_07965	PF03364	Polyketide cyclase / dehydrase and lipid transport
RY45_07970	PF03658	RnfH family Ubiquitin
RY45_07975	PF13460	NADH(P)-binding
RY45_07980	PF04355	SmpA / OmlA family
RY45_07985	PF00465	Iron-containing alcohol dehydrogenase
RY45_07990	PF01048	Phosphorylase superfamily
RY45_07995	PF00849	RNA pseudouridylate synthase
RY45_08000	PF01156	Inosine-uridine preferring nucleoside hydrolase
RY45_08010	PF09904	Winged helix-turn helix
RY45_08015	PF07509	RY45_08015
RY45_08020	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_08020	PF00672	HAMP domain
RY45_08025	PF01810	RY45_08025
RY45_08030	PF07313	Protein of unknown function (DUF1460)
RY45_08035	PF00999	Sodium/hydrogen exchanger family
RY45_08040	PF07555	beta-N-acetylglucosaminidase
RY45_08045	PF00999	Sodium/hydrogen exchanger family
RY45_08045	PF02080	TrkA-C domain
RY45_08045	PF03471	Transporter associated domain
RY45_08050	PF02557	D-alanyl-D-alanine carboxypeptidase
RY45_08055	PF01546	Peptidase family M20/M25/M40
RY45_08055	PF07687	Peptidase dimerisation domain
RY45_08060	PF03960	ArsC family
RY45_08065	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_08065	PF03466	LysR substrate binding domain
RY45_08075	PF03606	RY45_08075
RY45_08080	PF01546	Peptidase family M20/M25/M40
RY45_08080	PF07687	Peptidase dimerisation domain
RY45_08085	PF01902	ATP-binding region
RY45_08090	PF03605	RY45_08090
RY45_08095	PF00152	tRNA synthetases class II (D, K and N)
RY45_08095	PF01336	OB-fold nucleic acid binding domain
RY45_08105	PF00672	HAMP domain
RY45_08110	PF00202	Aminotransferase class-III
RY45_08115	PF04055	Radical SAM superfamily
RY45_08115	PF06968	Biotin and Thiamin Synthesis associated domain
RY45_08120	PF00155	Aminotransferase class I and II
RY45_08125	PF08241	Methyltransferase domain
RY45_08130	PF13500	AAA domain
RY45_08135	PF01435	Peptidase family M48
RY45_08140	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_08145	PF00111	2Fe-2S iron-sulfur cluster binding domain
RY45_08145	PF00175	Oxidoreductase NAD-binding domain
RY45_08145	PF00970	Oxidoreductase FAD-binding domain
RY45_08145	PF03473	MOSC domain
RY45_08145	PF03476	MOSC N-terminal beta barrel domain
RY45_08150	PF00037	4Fe-4S binding domain
RY45_08150	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_08150	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
RY45_08155	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
RY45_08155	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
RY45_08155	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
RY45_08155	PF10371	Domain of unknown function
RY45_08155	PF12838	4Fe-4S dicluster domain
RY45_08155	PF17147	RY45_08155
RY45_08160	PF04325	Protein of unknown function (DUF465)
RY45_08170	PF01554	MatE
RY45_08175	PF00916	RY45_08175
RY45_08175	PF01740	STAS domain
RY45_08180	PF06042	Bacterial protein of unknown function (DUF925)
RY45_08185	PF14542	GCN5-related N-acetyl-transferase
RY45_08190	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_08200	PF00465	Iron-containing alcohol dehydrogenase
RY45_08210	PF00440	Bacterial regulatory proteins, tetR family
RY45_08215	PF00171	Aldehyde dehydrogenase family
RY45_08225	PF00877	NlpC/P60 family
RY45_08230	PF07968	Leukocidin/Hemolysin toxin family
RY45_08230	PF12563	Hemolytic toxin N terminal
RY45_08235	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_08235	PF03466	LysR substrate binding domain
RY45_08240	PF00578	AhpC/TSA family
RY45_08240	PF10417	C-terminal domain of 1-Cys peroxiredoxin
RY45_08245	PF14397	RY45_08245
RY45_08250	PF14400	RY45_08250
RY45_08250	PF14402	RY45_08250
RY45_08255	PF05618	Putative ATP-dependant zinc protease
RY45_08260	PF08003	Protein of unknown function (DUF1698)
RY45_08265	PF13649	Methyltransferase domain
RY45_08270	PF01904	Protein of unknown function DUF72
RY45_08275	PF00152	tRNA synthetases class II (D, K and N)
RY45_08275	PF01336	OB-fold nucleic acid binding domain
RY45_08275	PF02938	GAD domain
RY45_08280	PF01709	Transcriptional regulator
RY45_08285	PF00884	Sulfatase
RY45_08285	PF08019	RY45_08285
RY45_08290	PF00480	ROK family
RY45_08295	PF01979	Amidohydrolase family
RY45_08300	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
RY45_08305	PF00367	phosphotransferase system, EIIB
RY45_08305	PF02378	Phosphotransferase system, EIIC
RY45_08310	PF00728	Glycosyl hydrolase family 20, catalytic domain
RY45_08310	PF02838	Glycosyl hydrolase family 20, domain 2
RY45_08310	PF03173	Putative carbohydrate binding domain
RY45_08310	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
RY45_08315	PF00749	tRNA synthetases class I (E and Q), catalytic domain
RY45_08315	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
RY45_08320	PF01475	Ferric uptake regulator family
RY45_08325	PF14539	Domain of unknown function (DUF4442)
RY45_08330	PF00258	Flavodoxin
RY45_08335	PF01402	Ribbon-helix-helix protein, copG family
RY45_08340	PF10981	RY45_08340
RY45_08345	PF12697	Alpha/beta hydrolase family
RY45_08350	PF03925	SeqA protein
RY45_08350	PF17206	RY45_08350
RY45_08355	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
RY45_08355	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
RY45_08355	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
RY45_08355	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
RY45_08360	PF00892	EamA-like transporter family
RY45_08365	PF01047	MarR family
RY45_08370	PF00440	Bacterial regulatory proteins, tetR family
RY45_08370	PF16925	RY45_08370
RY45_08375	PF00578	AhpC/TSA family
RY45_08380	PF13406	Transglycosylase SLT domain
RY45_08385	PF01066	CDP-alcohol phosphatidyltransferase
RY45_08390	PF00005	ABC transporter
RY45_08400	PF13416	Bacterial extracellular solute-binding protein
RY45_08405	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
RY45_08405	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_08405	PF09335	RY45_08405
RY45_08410	PF02627	Carboxymuconolactone decarboxylase family
RY45_08415	PF07386	RY45_08415
RY45_08420	PF01625	Peptide methionine sulfoxide reductase
RY45_08425	PF00639	PPIC-type PPIASE domain
RY45_08435	PF01103	Surface antigen
RY45_08435	PF07244	Surface antigen variable number repeat
RY45_08435	PF17243	RY45_08435
RY45_08440	PF04357	RY45_08440
RY45_08455	PF11993	RY45_08455
RY45_08460	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
RY45_08465	PF00563	EAL domain
RY45_08465	PF00990	GGDEF domain
RY45_08465	PF13426	PAS domain
RY45_08470	PF01464	Transglycosylase SLT domain
RY45_08470	PF14718	Soluble lytic murein transglycosylase L domain
RY45_08475	PF00356	Bacterial regulatory proteins, lacI family
RY45_08475	PF13377	Periplasmic binding protein-like domain
RY45_08485	PF03061	Thioesterase superfamily
RY45_08495	PF03372	Endonuclease/Exonuclease/phosphatase family
RY45_08500	PF01464	Transglycosylase SLT domain
RY45_08500	PF01476	LysM domain
RY45_08505	PF00753	Metallo-beta-lactamase superfamily
RY45_08505	PF16123	RY45_08505
RY45_08510	PF08241	Methyltransferase domain
RY45_08515	PF00075	RNase H
RY45_08520	PF00929	Exonuclease
RY45_08530	PF02541	Ppx/GppA phosphatase family
RY45_08535	PF02503	Polyphosphate kinase middle domain
RY45_08535	PF13089	Polyphosphate kinase N-terminal domain
RY45_08535	PF13090	Polyphosphate kinase C-terminal domain
RY45_08540	PF13740	ACT domain
RY45_08545	PF01396	RY45_08545
RY45_08545	PF10881	RY45_08545
RY45_08550	PF00158	Sigma-54 interaction domain
RY45_08550	PF02954	Bacterial regulatory protein, Fis family
RY45_08550	PF06490	RY45_08550
RY45_08555	PF00512	His Kinase A (phospho-acceptor) domain
RY45_08555	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_08555	PF13188	PAS domain
RY45_08560	PF00072	Response regulator receiver domain
RY45_08560	PF00158	Sigma-54 interaction domain
RY45_08560	PF02954	Bacterial regulatory protein, Fis family
RY45_08565	PF01784	NIF3 (NGG1p interacting factor 3)
RY45_08570	PF00551	Formyl transferase
RY45_08575	PF00586	AIR synthase related protein, N-terminal domain
RY45_08575	PF02769	AIR synthase related protein, C-terminal domain
RY45_08580	PF14681	Uracil phosphoribosyltransferase
RY45_08585	PF09839	RY45_08585
RY45_08590	PF00308	Bacterial dnaA  protein
RY45_08595	PF00463	Isocitrate lyase family
RY45_08600	PF01274	Malate synthase
RY45_08610	PF14437	RY45_08610
RY45_08615	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_08625	PF00005	ABC transporter
RY45_08630	PF01895	PhoU domain
RY45_08640	PF11692	RY45_08640
RY45_08645	PF01527	Transposase
RY45_08650	PF01595	RY45_08650
RY45_08650	PF03471	Transporter associated domain
RY45_08660	PF02574	Homocysteine S-methyltransferase
RY45_08665	PF13520	Amino acid permease
RY45_08675	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_08680	PF00005	ABC transporter
RY45_08685	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_08690	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_08695	PF00990	GGDEF domain
RY45_08700	PF07690	Major Facilitator Superfamily
RY45_08705	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_08705	PF05231	RY45_08705
RY45_08705	PF07730	Histidine kinase
RY45_08710	PF00072	Response regulator receiver domain
RY45_08710	PF00196	Bacterial regulatory proteins, luxR family
RY45_08715	PF01272	Transcription elongation factor, GreA/GreB, C-term
RY45_08715	PF14760	Rnk N-terminus
RY45_08725	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_08735	PF00245	Alkaline phosphatase
RY45_08740	PF00245	Alkaline phosphatase
RY45_08745	PF01926	50S ribosome-binding GTPase
RY45_08750	PF07690	Major Facilitator Superfamily
RY45_08755	PF00850	Histone deacetylase domain
RY45_08760	PF09829	RY45_08760
RY45_08765	PF06733	DEAD_2
RY45_08765	PF13307	Helicase C-terminal domain
RY45_08770	PF13609	Gram-negative porin
RY45_08780	PF00155	Aminotransferase class I and II
RY45_08790	PF00994	Probable molybdopterin binding domain
RY45_08790	PF03453	MoeA N-terminal region (domain I and II)
RY45_08790	PF03454	MoeA C-terminal region (domain IV)
RY45_08795	PF01227	GTP cyclohydrolase I
RY45_08800	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_08800	PF00672	HAMP domain
RY45_08800	PF12729	RY45_08800
RY45_08805	PF01268	Formate--tetrahydrofolate ligase
RY45_08815	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_08815	PF03466	LysR substrate binding domain
RY45_08820	PF04264	YceI-like domain
RY45_08830	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
RY45_08835	PF10262	Rdx family
RY45_08840	PF01553	Acyltransferase
RY45_08840	PF13444	Acetyltransferase (GNAT) domain
RY45_08845	PF01546	Peptidase family M20/M25/M40
RY45_08845	PF07687	Peptidase dimerisation domain
RY45_08855	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
RY45_08870	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_08875	PF03222	Tryptophan/tyrosine permease family
RY45_08880	PF01042	Endoribonuclease L-PSP
RY45_08885	PF03313	RY45_08885
RY45_08890	PF08348	RY45_08890
RY45_08890	PF13309	RY45_08890
RY45_08895	PF00300	Histidine phosphatase superfamily (branch 1)
RY45_08900	PF01844	HNH endonuclease
RY45_08910	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_08915	PF12146	Putative lysophospholipase
RY45_08920	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
RY45_08920	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
RY45_08925	PF00849	RNA pseudouridylate synthase
RY45_08925	PF01479	S4 domain
RY45_08930	PF07690	Major Facilitator Superfamily
RY45_08935	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
RY45_08940	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_08940	PF03466	LysR substrate binding domain
RY45_08945	PF07690	Major Facilitator Superfamily
RY45_08950	PF14526	Integron-associated effector binding protein
RY45_08955	PF03061	Thioesterase superfamily
RY45_08965	PF00892	EamA-like transporter family
RY45_08970	PF04391	RY45_08970
RY45_08975	PF00155	Aminotransferase class I and II
RY45_08975	PF00392	Bacterial regulatory proteins, gntR family
RY45_08980	PF01654	RY45_08980
RY45_08985	PF02322	RY45_08985
RY45_08990	PF08173	RY45_08990
RY45_08995	PF07690	Major Facilitator Superfamily
RY45_09000	PF00248	Aldo/keto reductase family
RY45_09005	PF03992	Antibiotic biosynthesis monooxygenase
RY45_09010	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_09020	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_09020	PF03466	LysR substrate binding domain
RY45_09025	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
RY45_09025	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
RY45_09030	PF00230	Major intrinsic protein
RY45_09035	PF07690	Major Facilitator Superfamily
RY45_09040	PF00455	RY45_09040
RY45_09040	PF08220	DeoR-like helix-turn-helix domain
RY45_09045	PF01266	FAD dependent oxidoreductase
RY45_09045	PF16901	RY45_09045
RY45_09050	PF03009	Glycerophosphoryl diester phosphodiesterase family
RY45_09055	PF12762	RY45_09055
RY45_09060	PF00793	DAHP synthetase I family
RY45_09065	PF01817	Chorismate mutase type II
RY45_09065	PF02153	Prephenate dehydrogenase
RY45_09070	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_09070	PF03466	LysR substrate binding domain
RY45_09075	PF04219	RY45_09075
RY45_09080	PF03974	Ecotin
RY45_09085	PF07603	RY45_09085
RY45_09090	PF07603	RY45_09090
RY45_09095	PF01483	Proprotein convertase P-domain
RY45_09095	PF10633	NPCBM-associated, NEW3 domain of alpha-galactosidase
RY45_09100	PF00326	Prolyl oligopeptidase family
RY45_09100	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
RY45_09105	PF00593	TonB dependent receptor
RY45_09105	PF07715	TonB-dependent Receptor Plug Domain
RY45_09110	PF00884	Sulfatase
RY45_09110	PF11893	RY45_09110
RY45_09115	PF07208	Protein of unknown function (DUF1414)
RY45_09120	PF04245	RY45_09120
RY45_09125	PF13416	Bacterial extracellular solute-binding protein
RY45_09130	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_09130	PF14785	Maltose transport system permease protein MalF P2 domain
RY45_09135	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_09140	PF00005	ABC transporter
RY45_09140	PF08402	TOBE domain
RY45_09145	PF03976	Polyphosphate kinase 2 (PPK2)
RY45_09150	PF00561	alpha/beta hydrolase fold
RY45_09155	PF06629	RY45_09155
RY45_09160	PF01594	RY45_09160
RY45_09165	PF01206	Sulfurtransferase TusA
RY45_09170	PF01435	Peptidase family M48
RY45_09170	PF14559	Tetratricopeptide repeat
RY45_09175	PF08534	Redoxin
RY45_09180	PF03960	ArsC family
RY45_09185	PF09842	RY45_09185
RY45_09190	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
RY45_09195	PF04336	RY45_09195
RY45_09200	PF01979	Amidohydrolase family
RY45_09205	PF03956	RY45_09205
RY45_09210	PF00005	ABC transporter
RY45_09215	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_09220	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_09225	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_09230	PF01891	Cobalt uptake substrate-specific transmembrane region
RY45_09235	PF04055	Radical SAM superfamily
RY45_09235	PF13353	4Fe-4S single cluster domain
RY45_09240	PF00563	EAL domain
RY45_09240	PF00989	PAS fold
RY45_09240	PF00990	GGDEF domain
RY45_09240	PF01590	GAF domain
RY45_09245	PF00581	Rhodanese-like domain
RY45_09245	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
RY45_09245	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_09250	PF00207	Alpha-2-macroglobulin family
RY45_09250	PF01835	MG2 domain
RY45_09250	PF07703	Alpha-2-macroglobulin family N-terminal region
RY45_09250	PF11974	Alpha-2-macroglobulin MG1 domain
RY45_09255	PF00905	Penicillin binding protein transpeptidase domain
RY45_09255	PF00912	Transglycosylase
RY45_09255	PF06832	RY45_09255
RY45_09265	PF02568	Thiamine biosynthesis protein (ThiI)
RY45_09265	PF02926	THUMP domain
RY45_09275	PF03458	RY45_09275
RY45_09280	PF00669	Bacterial flagellin N-terminal helical region
RY45_09280	PF00700	Bacterial flagellin C-terminal helical region
RY45_09285	PF00669	Bacterial flagellin N-terminal helical region
RY45_09285	PF00700	Bacterial flagellin C-terminal helical region
RY45_09290	PF03646	FlaG protein
RY45_09295	PF02465	RY45_09295
RY45_09295	PF07195	RY45_09295
RY45_09295	PF07196	Flagellin hook IN motif
RY45_09300	PF02561	Flagellar protein FliS
RY45_09310	PF01973	RY45_09310
RY45_09315	PF01497	Periplasmic binding protein
RY45_09320	PF03186	RY45_09320
RY45_09325	PF01048	Phosphorylase superfamily
RY45_09330	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_09335	PF02535	RY45_09335
RY45_09340	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_09340	PF00672	HAMP domain
RY45_09340	PF12729	RY45_09340
RY45_09345	PF00459	Inositol monophosphatase family
RY45_09355	PF00043	Glutathione S-transferase, C-terminal domain
RY45_09355	PF02798	Glutathione S-transferase, N-terminal domain
RY45_09360	PF07690	Major Facilitator Superfamily
RY45_09365	PF05164	Cell division protein ZapA
RY45_09370	PF03695	Uncharacterised protein family (UPF0149)
RY45_09375	PF01494	FAD binding domain
RY45_09380	PF01494	FAD binding domain
RY45_09385	PF01571	Aminomethyltransferase folate-binding domain
RY45_09385	PF08669	Glycine cleavage T-protein C-terminal barrel domain
RY45_09390	PF01597	Glycine cleavage H-protein
RY45_09395	PF02347	Glycine cleavage system P-protein
RY45_09400	PF03773	RY45_09400
RY45_09405	PF12840	Helix-turn-helix domain
RY45_09410	PF12840	Helix-turn-helix domain
RY45_09415	PF06953	Arsenical resistance operon trans-acting repressor ArsD
RY45_09420	PF02374	Anion-transporting ATPase
RY45_09425	PF01758	Sodium Bile acid symporter family
RY45_09430	PF03960	ArsC family
RY45_09435	PF08241	Methyltransferase domain
RY45_09445	PF07690	Major Facilitator Superfamily
RY45_09450	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_09450	PF13192	Thioredoxin domain
RY45_09455	PF00578	AhpC/TSA family
RY45_09455	PF10417	C-terminal domain of 1-Cys peroxiredoxin
RY45_09460	PF00571	CBS domain
RY45_09465	PF02547	Queuosine biosynthesis protein
RY45_09470	PF01702	Queuine tRNA-ribosyltransferase
RY45_09475	PF02699	Preprotein translocase subunit
RY45_09480	PF02355	Protein export membrane protein
RY45_09480	PF07549	SecD/SecF GG Motif
RY45_09480	PF13721	SecD export protein N-terminal TM region
RY45_09485	PF02355	Protein export membrane protein
RY45_09485	PF07549	SecD/SecF GG Motif
RY45_09490	PF00581	Rhodanese-like domain
RY45_09495	PF00515	Tetratricopeptide repeat
RY45_09500	PF01136	RY45_09500
RY45_09505	PF01136	RY45_09505
RY45_09510	PF02036	SCP-2 sterol transfer family
RY45_09520	PF00588	SpoU rRNA Methylase family
RY45_09525	PF02082	Transcriptional regulator
RY45_09530	PF00266	Aminotransferase class-V
RY45_09535	PF01592	NifU-like N terminal domain
RY45_09540	PF01521	Iron-sulphur cluster biosynthesis
RY45_09545	PF07743	HSCB C-terminal oligomerisation domain
RY45_09550	PF00012	Hsp70 protein
RY45_09555	PF00111	2Fe-2S iron-sulfur cluster binding domain
RY45_09560	PF00883	Cytosol aminopeptidase family, catalytic domain
RY45_09560	PF12404	RY45_09560
RY45_09565	PF00883	Cytosol aminopeptidase family, catalytic domain
RY45_09565	PF12404	RY45_09565
RY45_09570	PF00334	Nucleoside diphosphate kinase
RY45_09575	PF04055	Radical SAM superfamily
RY45_09580	PF13181	Tetratricopeptide repeat
RY45_09580	PF13431	Tetratricopeptide repeat
RY45_09585	PF13413	Helix-turn-helix domain
RY45_09585	PF13464	RY45_09585
RY45_09590	PF04551	GcpE protein
RY45_09595	PF03129	Anticodon binding domain
RY45_09595	PF13393	Histidyl-tRNA synthetase
RY45_09600	PF09976	Tetratricopeptide repeat
RY45_09605	PF13360	PQQ-like domain
RY45_09605	PF13570	PQQ-like domain
RY45_09610	PF01926	50S ribosome-binding GTPase
RY45_09610	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
RY45_09615	PF07191	zinc-ribbons
RY45_09620	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_09620	PF01464	Transglycosylase SLT domain
RY45_09625	PF02769	AIR synthase related protein, C-terminal domain
RY45_09625	PF13507	CobB/CobQ-like glutamine amidotransferase domain
RY45_09630	PF08448	PAS fold
RY45_09630	PF13487	HD domain
RY45_09635	PF08448	PAS fold
RY45_09635	PF13487	HD domain
RY45_09640	PF08495	RY45_09640
RY45_09640	PF10442	RY45_09640
RY45_09645	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
RY45_09650	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
RY45_09655	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
RY45_09655	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
RY45_09660	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
RY45_09665	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
RY45_09670	PF12838	4Fe-4S dicluster domain
RY45_09675	PF00146	NADH dehydrogenase
RY45_09680	PF00384	Molybdopterin oxidoreductase
RY45_09680	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
RY45_09680	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
RY45_09680	PF13510	2Fe-2S iron-sulfur cluster binding domain
RY45_09685	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
RY45_09685	PF10531	SLBB domain
RY45_09685	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
RY45_09690	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
RY45_09695	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
RY45_09695	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
RY45_09700	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
RY45_09705	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
RY45_09710	PF00691	OmpA family
RY45_09710	PF13677	RY45_09710
RY45_09715	PF01618	RY45_09715
RY45_09725	PF04536	TLP18
RY45_09730	PF04536	TLP18
RY45_09735	PF04011	LemA family
RY45_09740	PF03411	Penicillin-insensitive murein endopeptidase
RY45_09750	PF00076	RNA recognition motif
RY45_09755	PF00248	Aldo/keto reductase family
RY45_09760	PF01381	Helix-turn-helix
RY45_09765	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_09770	PF01212	Beta-eliminating lyase
RY45_09775	PF08448	PAS fold
RY45_09780	PF00072	Response regulator receiver domain
RY45_09785	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_09785	PF03466	LysR substrate binding domain
RY45_09790	PF11201	RY45_09790
RY45_09795	PF00563	EAL domain
RY45_09795	PF00990	GGDEF domain
RY45_09800	PF00881	Nitroreductase family
RY45_09810	PF06185	YecM protein
RY45_09815	PF07690	Major Facilitator Superfamily
RY45_09820	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_09820	PF03466	LysR substrate binding domain
RY45_09825	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_09825	PF03466	LysR substrate binding domain
RY45_09830	PF00925	GTP cyclohydrolase II
RY45_09835	PF02224	Cytidylate kinase
RY45_09840	PF00575	S1 RNA binding domain
RY45_09845	PF00216	Bacterial DNA-binding protein
RY45_09850	PF06305	RY45_09850
RY45_09855	PF13176	Tetratricopeptide repeat
RY45_09860	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
RY45_09865	PF01694	Rhomboid family
RY45_09870	PF03942	RY45_09870
RY45_09875	PF06508	Queuosine biosynthesis protein QueC
RY45_09880	PF04055	Radical SAM superfamily
RY45_09880	PF13394	4Fe-4S single cluster domain
RY45_09885	PF12843	RY45_09885
RY45_09890	PF01923	Cobalamin adenosyltransferase
RY45_09895	PF00816	H-NS histone family
RY45_09900	PF03553	RY45_09900
RY45_09905	PF00265	Thymidine kinase
RY45_09910	PF08014	RY45_09910
RY45_09915	PF10722	Putative bacterial sensory transduction regulator
RY45_09925	PF05638	Protein of unknown function (DUF796)
RY45_09930	PF05954	Phage late control gene D protein (GPD)
RY45_09940	PF12762	RY45_09940
RY45_09970	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
RY45_09970	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
RY45_09975	PF00313	'Cold-shock' DNA-binding domain
RY45_09980	PF02617	ATP-dependent Clp protease adaptor protein ClpS
RY45_09985	PF00004	ATPase family associated with various cellular activities (AAA)
RY45_09985	PF02861	Clp amino terminal domain
RY45_09985	PF07724	AAA domain (Cdc48 subfamily)
RY45_09985	PF10431	C-terminal, D2-small domain, of ClpB protein
RY45_09990	PF01176	Translation initiation factor 1A / IF-1
RY45_09995	PF04376	RY45_09995
RY45_09995	PF04377	RY45_09995
RY45_10000	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
RY45_10005	PF05433	RY45_10005
RY45_10010	PF00072	Response regulator receiver domain
RY45_10010	PF00990	GGDEF domain
RY45_10015	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_10020	PF01037	AsnC family
RY45_10020	PF13412	Winged helix-turn-helix DNA-binding
RY45_10025	PF01580	FtsK/SpoIIIE family
RY45_10025	PF09397	Ftsk gamma domain
RY45_10025	PF13491	RY45_10025
RY45_10030	PF03548	Outer membrane lipoprotein carrier protein LolA
RY45_10035	PF00004	ATPase family associated with various cellular activities (AAA)
RY45_10035	PF12002	MgsA AAA+ ATPase C terminal
RY45_10035	PF16193	RY45_10035
RY45_10045	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
RY45_10045	PF02403	Seryl-tRNA synthetase N-terminal domain
RY45_10050	PF02674	RY45_10050
RY45_10055	PF00156	Phosphoribosyl transferase domain
RY45_10055	PF13522	Glutamine amidotransferase domain
RY45_10060	PF06175	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
RY45_10065	PF00005	ABC transporter
RY45_10070	PF00005	ABC transporter
RY45_10070	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
RY45_10075	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_10075	PF12911	RY45_10075
RY45_10080	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_10085	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_10090	PF00158	Sigma-54 interaction domain
RY45_10095	PF04012	RY45_10095
RY45_10100	PF06667	RY45_10100
RY45_10105	PF04024	RY45_10105
RY45_10110	PF04317	RY45_10110
RY45_10115	PF05128	RY45_10115
RY45_10120	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
RY45_10125	PF01329	Pterin 4 alpha carbinolamine dehydratase
RY45_10130	PF00158	Sigma-54 interaction domain
RY45_10135	PF13689	RY45_10135
RY45_10140	PF00990	GGDEF domain
RY45_10140	PF17152	RY45_10140
RY45_10145	PF00691	OmpA family
RY45_10150	PF03741	RY45_10150
RY45_10155	PF01513	ATP-NAD kinase
RY45_10160	PF08891	RY45_10160
RY45_10165	PF00501	AMP-binding enzyme
RY45_10170	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
RY45_10170	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
RY45_10175	PF04172	RY45_10175
RY45_10180	PF03788	RY45_10180
RY45_10185	PF02065	Melibiase
RY45_10195	PF00929	Exonuclease
RY45_10195	PF08411	Exonuclease C-terminal
RY45_10200	PF02610	L-arabinose isomerase
RY45_10200	PF11762	L-arabinose isomerase C-terminal domain
RY45_10205	PF00596	Class II Aldolase and Adducin N-terminal domain
RY45_10210	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
RY45_10215	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
RY45_10220	PF00005	ABC transporter
RY45_10225	PF02653	RY45_10225
RY45_10230	PF02311	AraC-like ligand binding domain
RY45_10230	PF12833	Helix-turn-helix domain
RY45_10235	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_10235	PF03466	LysR substrate binding domain
RY45_10240	PF02678	Pirin
RY45_10240	PF05726	Pirin C-terminal cupin domain
RY45_10245	PF00444	Ribosomal protein L36
RY45_10250	PF01197	Ribosomal protein L31
RY45_10255	PF06183	DinI-like family
RY45_10260	PF11150	RY45_10260
RY45_10265	PF01863	Protein of unknown function DUF45
RY45_10275	PF00149	Calcineurin-like phosphoesterase
RY45_10275	PF02872	5'-nucleotidase, C-terminal domain
RY45_10280	PF03606	RY45_10280
RY45_10285	PF06037	RY45_10285
RY45_10290	PF01266	FAD dependent oxidoreductase
RY45_10290	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
RY45_10295	PF00109	Beta-ketoacyl synthase, N-terminal domain
RY45_10295	PF02801	Beta-ketoacyl synthase, C-terminal domain
RY45_10300	PF00583	Acetyltransferase (GNAT) family
RY45_10305	PF14302	RY45_10305
RY45_10310	PF00285	Citrate synthase
RY45_10315	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
RY45_10320	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
RY45_10325	PF00890	FAD binding domain
RY45_10325	PF02910	Fumarate reductase flavoprotein C-term
RY45_10330	PF13085	2Fe-2S iron-sulfur cluster binding domain
RY45_10330	PF13534	4Fe-4S dicluster domain
RY45_10335	PF00676	Dehydrogenase E1 component
RY45_10335	PF02779	Transketolase, pyrimidine binding domain
RY45_10335	PF16078	RY45_10335
RY45_10335	PF16870	RY45_10335
RY45_10340	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
RY45_10340	PF00364	Biotin-requiring enzyme
RY45_10340	PF02817	e3 binding domain
RY45_10345	PF00549	CoA-ligase
RY45_10345	PF08442	ATP-grasp domain
RY45_10350	PF00549	CoA-ligase
RY45_10350	PF02629	CoA binding domain
RY45_10360	PF03692	RY45_10360
RY45_10365	PF01266	FAD dependent oxidoreductase
RY45_10370	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_10375	PF00005	ABC transporter
RY45_10375	PF08402	TOBE domain
RY45_10380	PF13343	Bacterial extracellular solute-binding protein
RY45_10385	PF00392	Bacterial regulatory proteins, gntR family
RY45_10385	PF07702	UTRA domain
RY45_10390	PF00266	Aminotransferase class-V
RY45_10395	PF00202	Aminotransferase class-III
RY45_10405	PF01228	Glycine radical
RY45_10405	PF02901	Pyruvate formate lyase
RY45_10410	PF01226	Formate/nitrite transporter
RY45_10415	PF02624	YcaO-like family
RY45_10420	PF00893	Small Multidrug Resistance protein
RY45_10425	PF01118	Semialdehyde dehydrogenase, NAD binding domain
RY45_10425	PF02774	Semialdehyde dehydrogenase, dimerisation domain
RY45_10430	PF00675	Insulinase (Peptidase family M16)
RY45_10430	PF05193	Peptidase M16 inactive domain
RY45_10435	PF01053	Cys/Met metabolism PLP-dependent enzyme
RY45_10440	PF03171	2OG-Fe(II) oxygenase superfamily
RY45_10440	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
RY45_10445	PF13460	NADH(P)-binding
RY45_10450	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_10450	PF03466	LysR substrate binding domain
RY45_10455	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_10460	PF06445	GyrI-like small molecule binding domain
RY45_10460	PF12833	Helix-turn-helix domain
RY45_10465	PF00593	TonB dependent receptor
RY45_10465	PF07715	TonB-dependent Receptor Plug Domain
RY45_10470	PF11575	RY45_10470
RY45_10475	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_10475	PF03466	LysR substrate binding domain
RY45_10480	PF01717	Cobalamin-independent synthase, Catalytic domain
RY45_10480	PF08267	Cobalamin-independent synthase, N-terminal domain
RY45_10485	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
RY45_10490	PF00571	CBS domain
RY45_10490	PF04982	RY45_10490
RY45_10495	PF07969	Amidohydrolase family
RY45_10500	PF00440	Bacterial regulatory proteins, tetR family
RY45_10505	PF01266	FAD dependent oxidoreductase
RY45_10510	PF04244	Deoxyribodipyrimidine photo-lyase-related protein
RY45_10515	PF01212	Beta-eliminating lyase
RY45_10520	PF00768	D-alanyl-D-alanine carboxypeptidase
RY45_10525	PF00293	NUDIX domain
RY45_10530	PF03918	Cytochrome C biogenesis protein
RY45_10535	PF08534	Redoxin
RY45_10540	PF01578	RY45_10540
RY45_10540	PF16327	RY45_10540
RY45_10545	PF03916	RY45_10545
RY45_10550	PF13247	4Fe-4S dicluster domain
RY45_10555	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
RY45_10555	PF13435	Cytochrome c554 and c-prime
RY45_10560	PF02335	Cytochrome c552
RY45_10570	PF02754	RY45_10570
RY45_10570	PF13183	4Fe-4S dicluster domain
RY45_10575	PF00890	FAD binding domain
RY45_10580	PF01266	FAD dependent oxidoreductase
RY45_10580	PF04324	BFD-like [2Fe-2S] binding domain
RY45_10585	PF02810	SEC-C motif
RY45_10590	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_10590	PF00672	HAMP domain
RY45_10590	PF17200	RY45_10590
RY45_10595	PF00480	ROK family
RY45_10600	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_10600	PF17203	RY45_10600
RY45_10605	PF00072	Response regulator receiver domain
RY45_10605	PF12431	RY45_10605
RY45_10610	PF01970	RY45_10610
RY45_10615	PF07331	RY45_10615
RY45_10620	PF03401	Tripartite tricarboxylate transporter family receptor
RY45_10625	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_10625	PF01464	Transglycosylase SLT domain
RY45_10630	PF02080	TrkA-C domain
RY45_10630	PF06826	RY45_10630
RY45_10640	PF00271	Helicase conserved C-terminal domain
RY45_10640	PF02151	UvrB/uvrC motif
RY45_10640	PF04851	Type III restriction enzyme, res subunit
RY45_10640	PF12344	Ultra-violet resistance protein B
RY45_10645	PF06803	RY45_10645
RY45_10650	PF09335	RY45_10650
RY45_10655	PF02600	Disulfide bond formation protein DsbB
RY45_10660	PF06450	RY45_10660
RY45_10665	PF00392	Bacterial regulatory proteins, gntR family
RY45_10665	PF07840	FadR C-terminal domain
RY45_10670	PF04293	RY45_10670
RY45_10675	PF04285	RY45_10675
RY45_10680	PF06798	RY45_10680
RY45_10680	PF08298	PrkA AAA domain
RY45_10685	PF00270	DEAD/DEAH box helicase
RY45_10685	PF00271	Helicase conserved C-terminal domain
RY45_10685	PF16124	RY45_10685
RY45_10690	PF00375	Sodium:dicarboxylate symporter family
RY45_10695	PF03222	Tryptophan/tyrosine permease family
RY45_10700	PF00293	NUDIX domain
RY45_10705	PF00425	chorismate binding enzyme
RY45_10705	PF04715	Anthranilate synthase component I, N terminal region
RY45_10710	PF05681	RY45_10710
RY45_10710	PF05683	Fumarase C-terminus
RY45_10720	PF14056	RY45_10720
RY45_10730	PF00343	Carbohydrate phosphorylase
RY45_10735	PF00939	Sodium:sulfate symporter transmembrane region
RY45_10740	PF00085	Thioredoxin
RY45_10745	PF00072	Response regulator receiver domain
RY45_10745	PF00512	His Kinase A (phospho-acceptor) domain
RY45_10745	PF01627	Hpt domain
RY45_10745	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_10750	PF00005	ABC transporter
RY45_10750	PF00664	ABC transporter transmembrane region
RY45_10755	PF00005	ABC transporter
RY45_10755	PF00664	ABC transporter transmembrane region
RY45_10760	PF14539	Domain of unknown function (DUF4442)
RY45_10765	PF13275	S4 domain
RY45_10770	PF01575	MaoC like domain
RY45_10775	PF07167	RY45_10775
RY45_10780	PF09361	RY45_10780
RY45_10790	PF04250	RY45_10790
RY45_10795	PF08543	Phosphomethylpyrimidine kinase
RY45_10800	PF03992	Antibiotic biosynthesis monooxygenase
RY45_10805	PF00465	Iron-containing alcohol dehydrogenase
RY45_10810	PF00583	Acetyltransferase (GNAT) family
RY45_10815	PF00293	NUDIX domain
RY45_10820	PF01928	CYTH domain
RY45_10830	PF02694	RY45_10830
RY45_10835	PF00583	Acetyltransferase (GNAT) family
RY45_10840	PF13673	Acetyltransferase (GNAT) domain
RY45_10845	PF00270	DEAD/DEAH box helicase
RY45_10845	PF00271	Helicase conserved C-terminal domain
RY45_10850	PF00255	Glutathione peroxidase
RY45_10855	PF13640	2OG-Fe(II) oxygenase superfamily
RY45_10860	PF01820	D-ala D-ala ligase N-terminus
RY45_10860	PF07478	D-ala D-ala ligase C-terminus
RY45_10865	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_10870	PF03942	RY45_10870
RY45_10875	PF01925	RY45_10875
RY45_10880	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_10880	PF03466	LysR substrate binding domain
RY45_10885	PF00892	EamA-like transporter family
RY45_10890	PF12833	Helix-turn-helix domain
RY45_10895	PF11398	Protein of unknown function (DUF2813)
RY45_10905	PF00128	Alpha amylase, catalytic domain
RY45_10905	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
RY45_10935	PF00883	Cytosol aminopeptidase family, catalytic domain
RY45_10940	PF13419	Haloacid dehalogenase-like hydrolase
RY45_10945	PF01546	Peptidase family M20/M25/M40
RY45_10945	PF07687	Peptidase dimerisation domain
RY45_10950	PF00365	Phosphofructokinase
RY45_10955	PF00121	Triosephosphate isomerase
RY45_10960	PF02698	DUF218 domain
RY45_10965	PF13847	Methyltransferase domain
RY45_10970	PF03882	KicB killing factor
RY45_10970	PF17192	RY45_10970
RY45_10970	PF17193	RY45_10970
RY45_10975	PF04288	MukE-like family
RY45_10980	PF04310	MukB N-terminal
RY45_10980	PF13558	Putative exonuclease SbcCD, C subunit
RY45_10980	PF16330	RY45_10980
RY45_10985	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
RY45_10990	PF03992	Antibiotic biosynthesis monooxygenase
RY45_10995	PF00583	Acetyltransferase (GNAT) family
RY45_11000	PF01327	Polypeptide deformylase
RY45_11005	PF01965	DJ-1/PfpI family
RY45_11010	PF00583	Acetyltransferase (GNAT) family
RY45_11015	PF00583	Acetyltransferase (GNAT) family
RY45_11030	PF02567	Phenazine biosynthesis-like protein
RY45_11035	PF07819	PGAP1-like protein
RY45_11040	PF03831	PhnA protein
RY45_11045	PF13679	RY45_11045
RY45_11055	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_11060	PF04828	Glutathione-dependent formaldehyde-activating enzyme
RY45_11065	PF00300	Histidine phosphatase superfamily (branch 1)
RY45_11070	PF00990	GGDEF domain
RY45_11070	PF08448	PAS fold
RY45_11070	PF13188	PAS domain
RY45_11075	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
RY45_11080	PF01713	Smr domain
RY45_11085	PF05175	Methyltransferase small domain
RY45_11090	PF01264	Chorismate synthase
RY45_11095	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_11100	PF00270	DEAD/DEAH box helicase
RY45_11100	PF00271	Helicase conserved C-terminal domain
RY45_11105	PF08808	RY45_11105
RY45_11110	PF09722	RY45_11110
RY45_11115	PF03222	Tryptophan/tyrosine permease family
RY45_11120	PF00356	Bacterial regulatory proteins, lacI family
RY45_11120	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
RY45_11125	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
RY45_11125	PF00381	PTS HPr component phosphorylation site
RY45_11130	PF00294	pfkB family carbohydrate kinase
RY45_11135	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
RY45_11135	PF02378	Phosphotransferase system, EIIC
RY45_11140	PF06560	Glucose-6-phosphate isomerase (GPI)
RY45_11145	PF00356	Bacterial regulatory proteins, lacI family
RY45_11145	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
RY45_11155	PF03610	PTS system fructose IIA component
RY45_11160	PF03830	PTS system sorbose subfamily IIB component
RY45_11165	PF03609	RY45_11165
RY45_11170	PF03613	RY45_11170
RY45_11175	PF07221	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
RY45_11180	PF06945	RY45_11180
RY45_11185	PF03562	MltA specific insert domain
RY45_11185	PF06725	3D domain
RY45_11190	PF00111	2Fe-2S iron-sulfur cluster binding domain
RY45_11195	PF00268	Ribonucleotide reductase, small chain
RY45_11200	PF00317	Ribonucleotide reductase, all-alpha domain
RY45_11200	PF02867	Ribonucleotide reductase, barrel domain
RY45_11200	PF03477	ATP cone domain
RY45_11205	PF13419	Haloacid dehalogenase-like hydrolase
RY45_11210	PF13489	Methyltransferase domain
RY45_11215	PF00521	DNA gyrase/topoisomerase IV, subunit A
RY45_11215	PF03989	DNA gyrase C-terminal domain, beta-propeller
RY45_11220	PF04055	Radical SAM superfamily
RY45_11225	PF08238	Sel1 repeat
RY45_11230	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
RY45_11230	PF02824	TGS domain
RY45_11230	PF03129	Anticodon binding domain
RY45_11230	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
RY45_11235	PF00707	Translation initiation factor IF-3, C-terminal domain
RY45_11235	PF05198	Translation initiation factor IF-3, N-terminal domain
RY45_11240	PF01632	Ribosomal protein L35
RY45_11245	PF00453	Ribosomal protein L20
RY45_11250	PF01409	tRNA synthetases class II core domain (F)
RY45_11250	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
RY45_11255	PF01588	Putative tRNA binding domain
RY45_11255	PF03147	Ferredoxin-fold anticodon binding domain
RY45_11255	PF03483	B3/4 domain
RY45_11255	PF03484	tRNA synthetase B5 domain
RY45_11260	PF00216	Bacterial DNA-binding protein
RY45_11270	PF00072	Response regulator receiver domain
RY45_11275	PF00583	Acetyltransferase (GNAT) family
RY45_11280	PF02146	Sir2 family
RY45_11290	PF00990	GGDEF domain
RY45_11295	PF00356	Bacterial regulatory proteins, lacI family
RY45_11295	PF13377	Periplasmic binding protein-like domain
RY45_11300	PF00294	pfkB family carbohydrate kinase
RY45_11305	PF13407	Periplasmic binding protein domain
RY45_11310	PF02653	RY45_11310
RY45_11315	PF00005	ABC transporter
RY45_11320	PF05025	RbsD / FucU transport protein family
RY45_11325	PF02798	Glutathione S-transferase, N-terminal domain
RY45_11325	PF13410	Glutathione S-transferase, C-terminal domain
RY45_11335	PF11205	RY45_11335
RY45_11340	PF01171	PP-loop family
RY45_11345	PF00582	Universal stress protein family
RY45_11350	PF00027	Cyclic nucleotide-binding domain
RY45_11350	PF13545	Crp-like helix-turn-helix domain
RY45_11355	PF13386	RY45_11355
RY45_11360	PF03597	RY45_11360
RY45_11365	PF00122	E1-E2 ATPase
RY45_11365	PF00403	Heavy-metal-associated domain
RY45_11365	PF00702	haloacid dehalogenase-like hydrolase
RY45_11365	PF12156	RY45_11365
RY45_11370	PF05751	RY45_11370
RY45_11375	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
RY45_11375	PF14715	N-terminal domain of cytochrome oxidase-cbb3, FixP
RY45_11380	PF05545	RY45_11380
RY45_11385	PF02433	Cytochrome C oxidase, mono-heme subunit/FixO
RY45_11390	PF00115	Cytochrome C and Quinol oxidase polypeptide I
RY45_11400	PF13185	GAF domain
RY45_11405	PF04352	ProQ/FINO family
RY45_11405	PF17516	RY45_11405
RY45_11410	PF00595	PDZ domain (Also known as DHR or GLGF)
RY45_11410	PF03572	Peptidase family S41
RY45_11410	PF11818	RY45_11410
RY45_11415	PF01433	Peptidase family M1
RY45_11415	PF11940	Domain of unknown function (DUF3458)
RY45_11415	PF17432	RY45_11415
RY45_11420	PF11197	RY45_11420
RY45_11425	PF05088	RY45_11425
RY45_11430	PF01180	Dihydroorotate dehydrogenase
RY45_11435	PF07126	RY45_11435
RY45_11440	PF01170	Putative RNA methylase family UPF0020
RY45_11440	PF02926	THUMP domain
RY45_11440	PF10672	S-adenosylmethionine-dependent methyltransferase
RY45_11445	PF05768	Glutaredoxin-like domain (DUF836)
RY45_11450	PF00005	ABC transporter
RY45_11450	PF12848	ABC transporter
RY45_11450	PF16326	RY45_11450
RY45_11455	PF11949	RY45_11455
RY45_11460	PF07977	FabA-like domain
RY45_11465	PF05362	Lon protease (S16) C-terminal proteolytic domain
RY45_11465	PF13654	AAA domain
RY45_11470	PF00589	Phage integrase family
RY45_11475	PF07130	YebG protein
RY45_11480	PF07819	PGAP1-like protein
RY45_11485	PF00106	short chain dehydrogenase
RY45_11485	PF07993	Male sterility protein
RY45_11490	PF05597	RY45_11490
RY45_11495	PF01734	Patatin-like phospholipase
RY45_11500	PF00440	Bacterial regulatory proteins, tetR family
RY45_11500	PF13972	Bacterial transcriptional repressor
RY45_11510	PF03007	RY45_11510
RY45_11510	PF06974	RY45_11510
RY45_11515	PF09650	RY45_11515
RY45_11525	PF03972	MmgE/PrpD family
RY45_11530	PF00285	Citrate synthase
RY45_11535	PF13714	Phosphoenolpyruvate phosphomutase
RY45_11540	PF04403	RY45_11540
RY45_11545	PF04403	RY45_11545
RY45_11550	PF02470	RY45_11550
RY45_11555	PF01189	NOL1/NOP2/sun family
RY45_11555	PF13636	pre-rRNA processing and ribosome biogenesis
RY45_11555	PF17125	RY45_11555
RY45_11565	PF00589	Phage integrase family
RY45_11570	PF01026	TatD related DNase
RY45_11575	PF09115	DNA polymerase III, delta subunit, C terminal
RY45_11575	PF13177	DNA polymerase III, delta subunit
RY45_11580	PF02223	Thymidylate kinase
RY45_11585	PF02618	YceG-like family
RY45_11590	PF01063	Aminotransferase class IV
RY45_11595	PF00109	Beta-ketoacyl synthase, N-terminal domain
RY45_11595	PF02801	Beta-ketoacyl synthase, C-terminal domain
RY45_11600	PF00550	Phosphopantetheine attachment site
RY45_11605	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_11610	PF00698	Acyl transferase domain
RY45_11615	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
RY45_11615	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
RY45_11620	PF02504	Fatty acid synthesis protein
RY45_11625	PF01783	Ribosomal L32p protein family
RY45_11630	PF02620	RY45_11630
RY45_11635	PF01852	START domain
RY45_11640	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_11640	PF03466	LysR substrate binding domain
RY45_11645	PF07690	Major Facilitator Superfamily
RY45_11650	PF02545	Maf-like protein
RY45_11655	PF13419	Haloacid dehalogenase-like hydrolase
RY45_11660	PF00849	RNA pseudouridylate synthase
RY45_11660	PF01479	S4 domain
RY45_11665	PF00575	S1 RNA binding domain
RY45_11665	PF10150	Ribonuclease E/G family
RY45_11670	PF01384	RY45_11670
RY45_11675	PF00692	dUTPase
RY45_11680	PF00485	Phosphoribulokinase / Uridine kinase family
RY45_11685	PF01883	Domain of unknown function DUF59
RY45_11685	PF10609	ParA/MinD ATPase like
RY45_11690	PF01588	Putative tRNA binding domain
RY45_11690	PF08264	Anticodon-binding domain of tRNA
RY45_11690	PF09334	tRNA synthetases class I (M)
RY45_11695	PF00043	Glutathione S-transferase, C-terminal domain
RY45_11695	PF02798	Glutathione S-transferase, N-terminal domain
RY45_11700	PF00708	Acylphosphatase
RY45_11705	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_11710	PF10672	S-adenosylmethionine-dependent methyltransferase
RY45_11715	PF13410	Glutathione S-transferase, C-terminal domain
RY45_11715	PF13417	Glutathione S-transferase, N-terminal domain
RY45_11720	PF01757	RY45_11720
RY45_11730	PF00586	AIR synthase related protein, N-terminal domain
RY45_11730	PF02769	AIR synthase related protein, C-terminal domain
RY45_11740	PF00753	Metallo-beta-lactamase superfamily
RY45_11745	PF00072	Response regulator receiver domain
RY45_11745	PF01966	HD domain
RY45_11750	PF00072	Response regulator receiver domain
RY45_11750	PF00512	His Kinase A (phospho-acceptor) domain
RY45_11750	PF01627	Hpt domain
RY45_11750	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_11755	PF01386	Ribosomal L25p family
RY45_11765	PF00270	DEAD/DEAH box helicase
RY45_11765	PF00271	Helicase conserved C-terminal domain
RY45_11765	PF04408	Helicase associated domain (HA2)
RY45_11765	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
RY45_11765	PF11898	RY45_11765
RY45_11770	PF00571	CBS domain
RY45_11775	PF00196	Bacterial regulatory proteins, luxR family
RY45_11780	PF13231	RY45_11780
RY45_11785	PF02575	YbaB/EbfC DNA-binding family
RY45_11790	PF12169	DNA polymerase III subunits gamma and tau domain III
RY45_11790	PF12170	DNA polymerase III tau subunit V interacting with alpha
RY45_11790	PF13177	DNA polymerase III, delta subunit
RY45_11795	PF00156	Phosphoribosyl transferase domain
RY45_11800	PF04304	RY45_11800
RY45_11805	PF01207	Dihydrouridine synthase (Dus)
RY45_11815	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_11820	PF00570	HRDC domain
RY45_11820	PF01612	3'-5' exonuclease
RY45_11825	PF00501	AMP-binding enzyme
RY45_11825	PF13193	AMP-binding enzyme C-terminal domain
RY45_11830	PF00561	alpha/beta hydrolase fold
RY45_11835	PF03843	RY45_11835
RY45_11840	PF00814	Glycoprotease family
RY45_11845	PF13307	Helicase C-terminal domain
RY45_11855	PF01634	ATP phosphoribosyltransferase
RY45_11855	PF08029	HisG, C-terminal domain
RY45_11860	PF00815	Histidinol dehydrogenase
RY45_11865	PF00155	Aminotransferase class I and II
RY45_11870	PF00475	Imidazoleglycerol-phosphate dehydratase
RY45_11870	PF13242	HAD-hyrolase-like
RY45_11875	PF00117	Glutamine amidotransferase class-I
RY45_11880	PF00977	Histidine biosynthesis protein
RY45_11885	PF00072	Response regulator receiver domain
RY45_11885	PF13487	HD domain
RY45_11890	PF08448	PAS fold
RY45_11890	PF13188	PAS domain
RY45_11895	PF00072	Response regulator receiver domain
RY45_11895	PF00512	His Kinase A (phospho-acceptor) domain
RY45_11895	PF01627	Hpt domain
RY45_11895	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_11895	PF08447	PAS fold
RY45_11895	PF13426	PAS domain
RY45_11895	PF13493	Domain of unknown function (DUF4118)
RY45_11900	PF00977	Histidine biosynthesis protein
RY45_11905	PF01502	Phosphoribosyl-AMP cyclohydrolase
RY45_11905	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
RY45_11920	PF00501	AMP-binding enzyme
RY45_11920	PF13193	AMP-binding enzyme C-terminal domain
RY45_11925	PF03606	RY45_11925
RY45_11935	PF05433	RY45_11935
RY45_11940	PF00932	Lamin Tail Domain
RY45_11940	PF03160	Calx-beta domain
RY45_11940	PF03372	Endonuclease/Exonuclease/phosphatase family
RY45_11945	PF00111	2Fe-2S iron-sulfur cluster binding domain
RY45_11945	PF01799	[2Fe-2S] binding domain
RY45_11950	PF00941	FAD binding domain in molybdopterin dehydrogenase
RY45_11950	PF03450	CO dehydrogenase flavoprotein C-terminal domain
RY45_11955	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RY45_11955	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
RY45_11960	PF00860	Permease family
RY45_11965	PF01979	Amidohydrolase family
RY45_11970	PF00860	Permease family
RY45_11975	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RY45_11975	PF01799	[2Fe-2S] binding domain
RY45_11975	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
RY45_11980	PF00941	FAD binding domain in molybdopterin dehydrogenase
RY45_11985	PF01979	Amidohydrolase family
RY45_11990	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_11990	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
RY45_11995	PF12804	MobA-like NTP transferase domain
RY45_12005	PF02625	XdhC and CoxI family
RY45_12005	PF13478	XdhC Rossmann domain
RY45_12010	PF00892	EamA-like transporter family
RY45_12015	PF00696	Amino acid kinase family
RY45_12020	PF01979	Amidohydrolase family
RY45_12025	PF01546	Peptidase family M20/M25/M40
RY45_12025	PF07687	Peptidase dimerisation domain
RY45_12030	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_12035	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
RY45_12035	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
RY45_12040	PF00158	Sigma-54 interaction domain
RY45_12040	PF02954	Bacterial regulatory protein, Fis family
RY45_12050	PF03547	RY45_12050
RY45_12055	PF07152	YaeQ protein
RY45_12060	PF00378	Enoyl-CoA hydratase/isomerase family
RY45_12060	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
RY45_12060	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
RY45_12065	PF00108	Thiolase, N-terminal domain
RY45_12065	PF02803	Thiolase, C-terminal domain
RY45_12070	PF07726	ATPase family associated with various cellular activities (AAA)
RY45_12075	PF01882	RY45_12075
RY45_12080	PF14316	RY45_12080
RY45_12085	PF00092	von Willebrand factor type A domain
RY45_12090	PF07719	Tetratricopeptide repeat
RY45_12090	PF13519	von Willebrand factor type A domain
RY45_12095	PF13584	RY45_12095
RY45_12100	PF04542	Sigma-70 region 2
RY45_12100	PF08281	Sigma-70, region 4
RY45_12105	PF11859	RY45_12105
RY45_12110	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
RY45_12115	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
RY45_12120	PF00563	EAL domain
RY45_12120	PF08668	HDOD domain
RY45_12125	PF00108	Thiolase, N-terminal domain
RY45_12125	PF02803	Thiolase, C-terminal domain
RY45_12130	PF13411	MerR HTH family regulatory protein
RY45_12135	PF00375	Sodium:dicarboxylate symporter family
RY45_12140	PF06865	Protein of unknown function (DUF1255)
RY45_12145	PF03313	RY45_12145
RY45_12145	PF03315	Serine dehydratase beta chain
RY45_12150	PF03313	RY45_12150
RY45_12150	PF03315	Serine dehydratase beta chain
RY45_12155	PF13406	Transglycosylase SLT domain
RY45_12160	PF05166	YcgL domain
RY45_12165	PF03775	Septum formation inhibitor MinC, C-terminal domain
RY45_12165	PF05209	Septum formation inhibitor MinC, N-terminal domain
RY45_12170	PF13614	AAA domain
RY45_12175	PF03776	Septum formation topological specificity factor MinE
RY45_12180	PF04269	Protein of unknown function, DUF440
RY45_12185	PF00912	Transglycosylase
RY45_12190	PF04269	Protein of unknown function, DUF440
RY45_12195	PF06945	RY45_12195
RY45_12195	PF14375	RY45_12195
RY45_12200	PF13509	S1 domain
RY45_12205	PF03695	Uncharacterised protein family (UPF0149)
RY45_12210	PF12802	MarR family
RY45_12215	PF14056	RY45_12215
RY45_12225	PF02525	Flavodoxin-like fold
RY45_12230	PF00892	EamA-like transporter family
RY45_12235	PF01370	NAD dependent epimerase/dehydratase family
RY45_12235	PF02222	ATP-grasp domain
RY45_12240	PF13419	Haloacid dehalogenase-like hydrolase
RY45_12245	PF14255	RY45_12245
RY45_12250	PF00677	Lumazine binding domain
RY45_12255	PF06786	RY45_12255
RY45_12260	PF01554	MatE
RY45_12290	PF00136	DNA polymerase family B
RY45_12290	PF03104	DNA polymerase family B, exonuclease domain
RY45_12295	PF04073	Aminoacyl-tRNA editing domain
RY45_12300	PF00990	GGDEF domain
RY45_12305	PF00583	Acetyltransferase (GNAT) family
RY45_12310	PF01163	RIO1 family
RY45_12315	PF03279	RY45_12315
RY45_12320	PF03279	RY45_12320
RY45_12325	PF03595	Voltage-dependent anion channel
RY45_12330	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_12330	PF03466	LysR substrate binding domain
RY45_12335	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
RY45_12340	PF01261	Xylose isomerase-like TIM barrel
RY45_12345	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_12345	PF03466	LysR substrate binding domain
RY45_12350	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_12355	PF01966	HD domain
RY45_12360	PF00174	Oxidoreductase molybdopterin binding domain
RY45_12365	PF00563	EAL domain
RY45_12365	PF00990	GGDEF domain
RY45_12370	PF00232	Glycosyl hydrolase family 1
RY45_12375	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_12375	PF03466	LysR substrate binding domain
RY45_12385	PF00239	Resolvase, N terminal domain
RY45_12385	PF09339	IclR helix-turn-helix domain
RY45_12390	PF10980	Protein of unknown function (DUF2787)
RY45_12395	PF04002	RadC-like JAB domain
RY45_12400	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
RY45_12400	PF04851	Type III restriction enzyme, res subunit
RY45_12405	PF14281	RY45_12405
RY45_12415	PF02384	N-6 DNA Methylase
RY45_12415	PF12161	HsdM N-terminal domain
RY45_12430	PF00665	Integrase core domain
RY45_12440	PF00589	Phage integrase family
RY45_12445	PF01925	RY45_12445
RY45_12450	PF13520	Amino acid permease
RY45_12455	PF00106	short chain dehydrogenase
RY45_12460	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
RY45_12460	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
RY45_12465	PF16113	RY45_12465
RY45_12470	PF00378	Enoyl-CoA hydratase/isomerase family
RY45_12475	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
RY45_12475	PF02770	Acyl-CoA dehydrogenase, middle domain
RY45_12475	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
RY45_12480	PF00171	Aldehyde dehydrogenase family
RY45_12485	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
RY45_12485	PF02770	Acyl-CoA dehydrogenase, middle domain
RY45_12485	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
RY45_12490	PF01039	Carboxyl transferase domain
RY45_12495	PF00378	Enoyl-CoA hydratase/isomerase family
RY45_12500	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
RY45_12500	PF00364	Biotin-requiring enzyme
RY45_12500	PF02785	Biotin carboxylase C-terminal domain
RY45_12500	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
RY45_12505	PF00682	HMGL-like
RY45_12510	PF13411	MerR HTH family regulatory protein
RY45_12515	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_12520	PF05359	RY45_12520
RY45_12525	PF01184	RY45_12525
RY45_12530	PF06167	Glucose-regulated metallo-peptidase M90
RY45_12535	PF00583	Acetyltransferase (GNAT) family
RY45_12540	PF01235	RY45_12540
RY45_12565	PF00378	Enoyl-CoA hydratase/isomerase family
RY45_12570	PF00027	Cyclic nucleotide-binding domain
RY45_12570	PF03445	RY45_12570
RY45_12570	PF10335	RY45_12570
RY45_12575	PF00929	Exonuclease
RY45_12580	PF04341	RY45_12580
RY45_12585	PF00474	Sodium:solute symporter family
RY45_12590	PF00005	ABC transporter
RY45_12590	PF12848	ABC transporter
RY45_12595	PF13616	PPIC-type PPIASE domain
RY45_12595	PF13624	SurA N-terminal domain
RY45_12605	PF00004	ATPase family associated with various cellular activities (AAA)
RY45_12605	PF02190	ATP-dependent protease La (LON) domain
RY45_12605	PF05362	Lon protease (S16) C-terminal proteolytic domain
RY45_12610	PF06689	ClpX C4-type zinc finger
RY45_12610	PF07724	AAA domain (Cdc48 subfamily)
RY45_12610	PF10431	C-terminal, D2-small domain, of ClpB protein
RY45_12615	PF00574	Clp protease
RY45_12620	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
RY45_12620	PF05697	Bacterial trigger factor protein (TF)
RY45_12620	PF05698	Bacterial trigger factor protein (TF) C-terminus
RY45_12625	PF03733	RY45_12625
RY45_12630	PF13023	HD domain
RY45_12635	PF02687	RY45_12635
RY45_12635	PF12704	MacB-like periplasmic core domain
RY45_12640	PF00005	ABC transporter
RY45_12645	PF02687	RY45_12645
RY45_12645	PF12704	MacB-like periplasmic core domain
RY45_12655	PF00270	DEAD/DEAH box helicase
RY45_12655	PF00271	Helicase conserved C-terminal domain
RY45_12655	PF02559	CarD-like/TRCF domain
RY45_12655	PF03461	TRCF domain
RY45_12660	PF00316	Fructose-1-6-bisphosphatase
RY45_12665	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_12670	PF00892	EamA-like transporter family
RY45_12675	PF06526	Protein of unknown function (DUF1107)
RY45_12680	PF00300	Histidine phosphatase superfamily (branch 1)
RY45_12685	PF00675	Insulinase (Peptidase family M16)
RY45_12685	PF05193	Peptidase M16 inactive domain
RY45_12685	PF16187	RY45_12685
RY45_12690	PF05724	Thiopurine S-methyltransferase (TPMT)
RY45_12695	PF07714	Protein tyrosine kinase
RY45_12700	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_12705	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
RY45_12705	PF12833	Helix-turn-helix domain
RY45_12720	PF00117	Glutamine amidotransferase class-I
RY45_12720	PF00958	GMP synthase C terminal domain
RY45_12720	PF02540	NAD synthase
RY45_12725	PF00478	IMP dehydrogenase / GMP reductase domain
RY45_12725	PF00571	CBS domain
RY45_12730	PF02705	RY45_12730
RY45_12735	PF03544	Gram-negative bacterial TonB protein C-terminal
RY45_12740	PF01618	RY45_12740
RY45_12745	PF02472	Biopolymer transport protein ExbD/TolR
RY45_12750	PF00892	EamA-like transporter family
RY45_12755	PF02601	RY45_12755
RY45_12755	PF13742	RY45_12755
RY45_12760	PF04055	Radical SAM superfamily
RY45_12765	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_12765	PF00672	HAMP domain
RY45_12770	PF00793	DAHP synthetase I family
RY45_12775	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
RY45_12780	PF00266	Aminotransferase class-V
RY45_12785	PF00766	Electron transfer flavoprotein FAD-binding domain
RY45_12785	PF01012	Electron transfer flavoprotein domain
RY45_12790	PF01012	Electron transfer flavoprotein domain
RY45_12795	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
RY45_12795	PF13450	NAD(P)-binding Rossmann-like domain
RY45_12800	PF01544	CorA-like Mg2+ transporter protein
RY45_12805	PF11143	RY45_12805
RY45_12815	PF07690	Major Facilitator Superfamily
RY45_12820	PF00593	TonB dependent receptor
RY45_12820	PF07715	TonB-dependent Receptor Plug Domain
RY45_12825	PF01032	FecCD transport family
RY45_12830	PF01032	FecCD transport family
RY45_12835	PF00005	ABC transporter
RY45_12840	PF01648	4'-phosphopantetheinyl transferase superfamily
RY45_12845	PF01497	Periplasmic binding protein
RY45_12850	PF00501	AMP-binding enzyme
RY45_12850	PF13193	AMP-binding enzyme C-terminal domain
RY45_12855	PF00501	AMP-binding enzyme
RY45_12855	PF00550	Phosphopantetheine attachment site
RY45_12855	PF00668	Condensation domain
RY45_12860	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_12865	PF00501	AMP-binding enzyme
RY45_12865	PF00550	Phosphopantetheine attachment site
RY45_12865	PF00668	Condensation domain
RY45_12865	PF13193	AMP-binding enzyme C-terminal domain
RY45_12870	PF00550	Phosphopantetheine attachment site
RY45_12870	PF00857	Isochorismatase family
RY45_12875	PF00501	AMP-binding enzyme
RY45_12875	PF13193	AMP-binding enzyme C-terminal domain
RY45_12880	PF00425	chorismate binding enzyme
RY45_12885	PF07273	Protein of unknown function (DUF1439)
RY45_12895	PF00483	Nucleotidyl transferase
RY45_12900	PF00563	EAL domain
RY45_12900	PF00990	GGDEF domain
RY45_12910	PF11042	RY45_12910
RY45_12915	PF00294	pfkB family carbohydrate kinase
RY45_12920	PF01124	MAPEG family
RY45_12925	PF00762	Ferrochelatase
RY45_12930	PF00406	Adenylate kinase
RY45_12930	PF05191	Adenylate kinase, active site lid
RY45_12935	PF00183	Hsp90 protein
RY45_12935	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_12940	PF02132	RecR protein
RY45_12940	PF13662	Toprim domain
RY45_12945	PF02634	FdhD/NarQ family
RY45_12950	PF00158	Sigma-54 interaction domain
RY45_12950	PF13185	GAF domain
RY45_12960	PF00384	Molybdopterin oxidoreductase
RY45_12960	PF01568	Molydopterin dinucleotide binding domain
RY45_12965	PF00384	Molybdopterin oxidoreductase
RY45_12965	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
RY45_12970	PF12838	4Fe-4S dicluster domain
RY45_12975	PF02705	RY45_12975
RY45_12980	PF00037	4Fe-4S binding domain
RY45_12980	PF12798	4Fe-4S binding domain
RY45_12980	PF12837	4Fe-4S binding domain
RY45_12985	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
RY45_12985	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
RY45_12990	PF00146	NADH dehydrogenase
RY45_12995	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
RY45_12995	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
RY45_12995	PF00374	Nickel-dependent hydrogenase
RY45_13000	PF12838	4Fe-4S dicluster domain
RY45_13005	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
RY45_13010	PF07450	RY45_13010
RY45_13015	PF01750	Hydrogenase maturation protease
RY45_13020	PF03841	L-seryl-tRNA selenium transferase
RY45_13020	PF12390	RY45_13020
RY45_13025	PF00009	Elongation factor Tu GTP binding domain
RY45_13025	PF03144	Elongation factor Tu domain 2
RY45_13025	PF09107	Elongation factor SelB, winged helix
RY45_13030	PF00708	Acylphosphatase
RY45_13030	PF01300	Telomere recombination
RY45_13030	PF07503	HypF finger
RY45_13035	PF01455	HupF/HypC family
RY45_13040	PF01924	Hydrogenase formation hypA family
RY45_13045	PF00586	AIR synthase related protein, N-terminal domain
RY45_13045	PF02769	AIR synthase related protein, C-terminal domain
RY45_13050	PF01155	Hydrogenase expression/synthesis hypA family
RY45_13055	PF02492	CobW/HypB/UreG, nucleotide-binding domain
RY45_13060	PF00005	ABC transporter
RY45_13065	PF00005	ABC transporter
RY45_13070	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_13075	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_13080	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_13090	PF01750	Hydrogenase maturation protease
RY45_13095	PF00374	Nickel-dependent hydrogenase
RY45_13105	PF13247	4Fe-4S dicluster domain
RY45_13110	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
RY45_13110	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
RY45_13115	PF00072	Response regulator receiver domain
RY45_13120	PF13466	STAS domain
RY45_13125	PF01584	CheW-like domain
RY45_13125	PF01627	Hpt domain
RY45_13125	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_13125	PF02895	Signal transducing histidine kinase, homodimeric domain
RY45_13130	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_13130	PF12729	RY45_13130
RY45_13135	PF01584	CheW-like domain
RY45_13140	PF01739	CheR methyltransferase, SAM binding domain
RY45_13140	PF03705	CheR methyltransferase, all-alpha domain
RY45_13145	PF00072	Response regulator receiver domain
RY45_13145	PF01339	CheB methylesterase
RY45_13150	PF00072	Response regulator receiver domain
RY45_13150	PF00563	EAL domain
RY45_13155	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_13155	PF12729	RY45_13155
RY45_13160	PF00842	Alanine racemase, C-terminal domain
RY45_13160	PF01168	Alanine racemase, N-terminal domain
RY45_13165	PF03483	B3/4 domain
RY45_13170	PF01381	Helix-turn-helix
RY45_13170	PF07883	Cupin domain
RY45_13180	PF00916	RY45_13180
RY45_13180	PF01740	STAS domain
RY45_13195	PF03350	RY45_13195
RY45_13210	PF03239	RY45_13210
RY45_13215	PF01593	Flavin containing amine oxidoreductase
RY45_13230	PF07690	Major Facilitator Superfamily
RY45_13235	PF14267	RY45_13235
RY45_13240	PF00005	ABC transporter
RY45_13245	PF02687	RY45_13245
RY45_13245	PF12704	MacB-like periplasmic core domain
RY45_13250	PF07143	Hydroxyneurosporene synthase (CrtC)
RY45_13250	PF17186	RY45_13250
RY45_13270	PF01565	FAD binding domain
RY45_13270	PF02754	RY45_13270
RY45_13270	PF02913	FAD linked oxidases, C-terminal domain
RY45_13270	PF13183	4Fe-4S dicluster domain
RY45_13275	PF02589	Uncharacterised ACR, YkgG family COG1556
RY45_13280	PF02589	Uncharacterised ACR, YkgG family COG1556
RY45_13280	PF11870	RY45_13280
RY45_13280	PF13183	4Fe-4S dicluster domain
RY45_13285	PF02754	RY45_13285
RY45_13290	PF02652	RY45_13290
RY45_13295	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_13295	PF03466	LysR substrate binding domain
RY45_13300	PF13467	Ribbon-helix-helix domain
RY45_13305	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_13310	PF00561	alpha/beta hydrolase fold
RY45_13315	PF04237	YjbR
RY45_13320	PF13673	Acetyltransferase (GNAT) domain
RY45_13325	PF12290	RY45_13325
RY45_13335	PF01625	Peptide methionine sulfoxide reductase
RY45_13340	PF00583	Acetyltransferase (GNAT) family
RY45_13340	PF00696	Amino acid kinase family
RY45_13345	PF00696	Amino acid kinase family
RY45_13355	PF00884	Sulfatase
RY45_13360	PF02016	LD-carboxypeptidase
RY45_13365	PF01734	Patatin-like phospholipase
RY45_13370	PF17179	RY45_13370
RY45_13375	PF00175	Oxidoreductase NAD-binding domain
RY45_13375	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
RY45_13380	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
RY45_13380	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
RY45_13380	PF14697	4Fe-4S dicluster domain
RY45_13385	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
RY45_13385	PF10414	Sirohaem synthase dimerisation region
RY45_13385	PF13241	Putative NAD(P)-binding
RY45_13385	PF14824	Sirohaem biosynthesis protein central
RY45_13395	PF01906	Putative heavy-metal-binding
RY45_13405	PF05791	Bacillus haemolytic enterotoxin (HBL)
RY45_13415	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_13420	PF05728	Uncharacterised protein family (UPF0227)
RY45_13425	PF00860	Permease family
RY45_13430	PF01432	Peptidase family M3
RY45_13430	PF08439	Oligopeptidase F
RY45_13435	PF01432	Peptidase family M3
RY45_13435	PF08439	Oligopeptidase F
RY45_13440	PF05661	RY45_13440
RY45_13445	PF06041	Bacterial protein of unknown function (DUF924)
RY45_13450	PF02355	Protein export membrane protein
RY45_13450	PF07549	SecD/SecF GG Motif
RY45_13455	PF02355	Protein export membrane protein
RY45_13455	PF07549	SecD/SecF GG Motif
RY45_13455	PF13721	SecD export protein N-terminal TM region
RY45_13470	PF01636	Phosphotransferase enzyme family
RY45_13475	PF13036	Protein of unknown function (DUF3897)
RY45_13480	PF07233	Protein of unknown function (DUF1425)
RY45_13490	PF01230	HIT domain
RY45_13495	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_13495	PF00672	HAMP domain
RY45_13500	PF01242	6-pyruvoyl tetrahydropterin synthase
RY45_13505	PF01979	Amidohydrolase family
RY45_13520	PF00375	Sodium:dicarboxylate symporter family
RY45_13525	PF04191	Phospholipid methyltransferase
RY45_13530	PF00842	Alanine racemase, C-terminal domain
RY45_13530	PF01168	Alanine racemase, N-terminal domain
RY45_13535	PF03741	RY45_13535
RY45_13540	PF00005	ABC transporter
RY45_13540	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
RY45_13545	PF00005	ABC transporter
RY45_13545	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
RY45_13550	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_13550	PF12911	RY45_13550
RY45_13555	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_13560	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_13565	PF01914	RY45_13565
RY45_13570	PF10014	2OG-Fe dioxygenase
RY45_13575	PF00171	Aldehyde dehydrogenase family
RY45_13575	PF00465	Iron-containing alcohol dehydrogenase
RY45_13580	PF11871	RY45_13580
RY45_13580	PF13487	HD domain
RY45_13585	PF06580	RY45_13585
RY45_13585	PF07694	5TMR of 5TMR-LYT
RY45_13590	PF00072	Response regulator receiver domain
RY45_13590	PF04397	LytTr DNA-binding domain
RY45_13595	PF02554	RY45_13595
RY45_13595	PF13722	RY45_13595
RY45_13600	PF11742	RY45_13600
RY45_13605	PF16576	RY45_13605
RY45_13610	PF00271	Helicase conserved C-terminal domain
RY45_13610	PF04851	Type III restriction enzyme, res subunit
RY45_13615	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
RY45_13620	PF00462	Glutaredoxin
RY45_13625	PF07866	Protein of unknown function (DUF1653)
RY45_13630	PF00155	Aminotransferase class I and II
RY45_13635	PF03606	RY45_13635
RY45_13640	PF07055	Enoyl reductase FAD binding domain
RY45_13640	PF12241	Trans-2-enoyl-CoA reductase catalytic region
RY45_13640	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
RY45_13645	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_13645	PF08447	PAS fold
RY45_13645	PF13426	PAS domain
RY45_13655	PF00892	EamA-like transporter family
RY45_13660	PF02508	RY45_13660
RY45_13665	PF04060	Putative Fe-S cluster
RY45_13665	PF14697	4Fe-4S dicluster domain
RY45_13670	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
RY45_13670	PF10531	SLBB domain
RY45_13670	PF12838	4Fe-4S dicluster domain
RY45_13670	PF13375	RnfC Barrel sandwich hybrid domain
RY45_13675	PF03116	RY45_13675
RY45_13680	PF04205	FMN-binding domain
RY45_13685	PF02508	RY45_13685
RY45_13690	PF00633	Helix-hairpin-helix motif
RY45_13690	PF00730	HhH-GPD superfamily base excision DNA repair protein
RY45_13690	PF10576	Iron-sulfur binding domain of endonuclease III
RY45_13695	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_13700	PF00691	OmpA family
RY45_13705	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_13705	PF08376	Nitrate and nitrite sensing
RY45_13710	PF00929	Exonuclease
RY45_13715	PF03553	RY45_13715
RY45_13715	PF13726	RY45_13715
RY45_13720	PF00270	DEAD/DEAH box helicase
RY45_13720	PF00271	Helicase conserved C-terminal domain
RY45_13720	PF03880	DbpA RNA binding domain
RY45_13725	PF03061	Thioesterase superfamily
RY45_13735	PF01565	FAD binding domain
RY45_13735	PF02913	FAD linked oxidases, C-terminal domain
RY45_13735	PF13183	4Fe-4S dicluster domain
RY45_13740	PF01545	Cation efflux family
RY45_13745	PF00571	CBS domain
RY45_13745	PF03471	Transporter associated domain
RY45_13745	PF03741	RY45_13745
RY45_13750	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
RY45_13755	PF00962	Adenosine/AMP deaminase
RY45_13760	PF13242	HAD-hyrolase-like
RY45_13760	PF13344	Haloacid dehalogenase-like hydrolase
RY45_13765	PF00999	Sodium/hydrogen exchanger family
RY45_13765	PF02254	TrkA-N domain
RY45_13770	PF05899	Protein of unknown function (DUF861)
RY45_13775	PF00733	Asparagine synthase
RY45_13775	PF13537	Glutamine amidotransferase domain
RY45_13780	PF13899	Thioredoxin-like
RY45_13785	PF13417	Glutathione S-transferase, N-terminal domain
RY45_13790	PF13417	Glutathione S-transferase, N-terminal domain
RY45_13790	PF14497	Glutathione S-transferase, C-terminal domain
RY45_13795	PF01557	Fumarylacetoacetate (FAA) hydrolase family
RY45_13800	PF04209	homogentisate 1,2-dioxygenase
RY45_13805	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_13805	PF14696	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
RY45_13810	PF12710	haloacid dehalogenase-like hydrolase
RY45_13815	PF00849	RNA pseudouridylate synthase
RY45_13820	PF00990	GGDEF domain
RY45_13820	PF09084	NMT1/THI5 like
RY45_13825	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_13825	PF08447	PAS fold
RY45_13830	PF06057	Bacterial virulence protein (VirJ)
RY45_13835	PF03706	RY45_13835
RY45_13835	PF09924	Uncharacterized conserved protein (DUF2156)
RY45_13840	PF00884	Sulfatase
RY45_13840	PF08019	RY45_13840
RY45_13845	PF03988	RY45_13845
RY45_13850	PF07690	Major Facilitator Superfamily
RY45_13855	PF02108	RY45_13855
RY45_13865	PF01514	Secretory protein of YscJ/FliF family
RY45_13870	PF17001	RY45_13870
RY45_13875	PF09025	YopR Core
RY45_13880	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
RY45_13885	PF09392	Type III secretion needle MxiH like
RY45_13890	PF08988	Protein of unknown function (DUF1895)
RY45_13895	PF16693	RY45_13895
RY45_13895	PF16697	RY45_13895
RY45_13900	PF00263	RY45_13900
RY45_13900	PF03958	Bacterial type II/III secretion system short domain
RY45_13905	PF05932	Tir chaperone protein (CesT) family
RY45_13910	PF16806	RY45_13910
RY45_13915	PF12833	Helix-turn-helix domain
RY45_13920	PF09619	Type III secretion system lipoprotein chaperone (YscW)
RY45_13930	PF05932	Tir chaperone protein (CesT) family
RY45_13935	PF05844	YopD protein
RY45_13940	PF04888	RY45_13940
RY45_13950	PF04792	V antigen (LcrV) protein
RY45_13955	PF07216	RY45_13955
RY45_13960	PF09621	RY45_13960
RY45_13965	PF00771	FHIPEP family
RY45_13970	PF14559	Tetratricopeptide repeat
RY45_13975	PF09474	RY45_13975
RY45_13985	PF09059	TyeA
RY45_13990	PF07201	HrpJ-like domain
RY45_13995	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
RY45_13995	PF02874	ATP synthase alpha/beta family, beta-barrel domain
RY45_14000	PF07321	Type III secretion protein YscO
RY45_14010	PF01052	Surface presentation of antigens (SPOA)
RY45_14015	PF00813	RY45_14015
RY45_14020	PF01313	RY45_14020
RY45_14025	PF01311	RY45_14025
RY45_14030	PF01312	FlhB HrpN YscU SpaS Family
RY45_14045	PF01027	Inhibitor of apoptosis-promoting Bax1
RY45_14050	PF12805	RY45_14050
RY45_14050	PF13515	RY45_14050
RY45_14055	PF04358	DsrC like protein
RY45_14060	PF05036	Sporulation related domain
RY45_14065	PF02875	Mur ligase family, glutamate ligase domain
RY45_14065	PF08245	Mur ligase middle domain
RY45_14070	PF01039	Carboxyl transferase domain
RY45_14075	PF01416	tRNA pseudouridine synthase
RY45_14085	PF01118	Semialdehyde dehydrogenase, NAD binding domain
RY45_14085	PF02774	Semialdehyde dehydrogenase, dimerisation domain
RY45_14090	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
RY45_14090	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
RY45_14090	PF11890	Domain of unknown function (DUF3410)
RY45_14095	PF01569	PAP2 superfamily
RY45_14100	PF03180	NLPA lipoprotein
RY45_14105	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_14120	PF00857	Isochorismatase family
RY45_14125	PF00082	Subtilase family
RY45_14125	PF01483	Proprotein convertase P-domain
RY45_14135	PF00933	Glycosyl hydrolase family 3 N terminal domain
RY45_14135	PF01915	Glycosyl hydrolase family 3 C-terminal domain
RY45_14135	PF14310	Fibronectin type III-like domain
RY45_14140	PF12625	RY45_14140
RY45_14140	PF12833	Helix-turn-helix domain
RY45_14145	PF00391	PEP-utilising enzyme, mobile domain
RY45_14145	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
RY45_14145	PF02896	PEP-utilising enzyme, TIM barrel domain
RY45_14150	PF03618	RY45_14150
RY45_14160	PF00324	Amino acid permease
RY45_14165	PF04402	Protein of unknown function (DUF541)
RY45_14185	PF00563	EAL domain
RY45_14185	PF00990	GGDEF domain
RY45_14185	PF16448	RY45_14185
RY45_14190	PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP
RY45_14195	PF02321	Outer membrane efflux protein
RY45_14200	PF13437	HlyD family secretion protein
RY45_14200	PF13533	Biotin-lipoyl like
RY45_14205	PF00005	ABC transporter
RY45_14205	PF00664	ABC transporter transmembrane region
RY45_14210	PF04055	Radical SAM superfamily
RY45_14210	PF16199	RY45_14210
RY45_14220	PF00310	Glutamine amidotransferases class-II
RY45_14220	PF01493	GXGXG motif
RY45_14220	PF01645	Conserved region in glutamate synthase
RY45_14220	PF04898	Glutamate synthase central domain
RY45_14225	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_14225	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
RY45_14230	PF00005	ABC transporter
RY45_14235	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_14240	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_14245	PF12680	SnoaL-like domain
RY45_14250	PF01596	O-methyltransferase
RY45_14255	PF00376	MerR family regulatory protein
RY45_14255	PF09278	MerR, DNA binding
RY45_14260	PF14027	RY45_14260
RY45_14270	PF14521	Lysine-specific metallo-endopeptidase
RY45_14275	PF11140	RY45_14275
RY45_14280	PF00270	DEAD/DEAH box helicase
RY45_14280	PF00271	Helicase conserved C-terminal domain
RY45_14285	PF13302	Acetyltransferase (GNAT) domain
RY45_14290	PF09335	RY45_14290
RY45_14295	PF05228	RY45_14295
RY45_14305	PF01396	RY45_14305
RY45_14305	PF08378	RY45_14305
RY45_14315	PF07759	RY45_14315
RY45_14320	PF00682	HMGL-like
RY45_14320	PF08502	LeuA allosteric (dimerisation) domain
RY45_14325	PF02142	MGS-like domain
RY45_14325	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
RY45_14325	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
RY45_14330	PF00117	Glutamine amidotransferase class-I
RY45_14330	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
RY45_14335	PF01113	Dihydrodipicolinate reductase, N-terminus
RY45_14335	PF05173	Dihydrodipicolinate reductase, C-terminus
RY45_14340	PF03553	RY45_14340
RY45_14345	PF01812	5-formyltetrahydrofolate cyclo-ligase family
RY45_14350	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
RY45_14360	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
RY45_14360	PF01842	ACT domain
RY45_14360	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
RY45_14365	PF01219	Prokaryotic diacylglycerol kinase
RY45_14370	PF00793	DAHP synthetase I family
RY45_14375	PF00583	Acetyltransferase (GNAT) family
RY45_14380	PF00005	ABC transporter
RY45_14385	PF01032	FecCD transport family
RY45_14390	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_14395	PF04342	RY45_14395
RY45_14400	PF00437	Type II/IV secretion system protein
RY45_14405	PF00483	Nucleotidyl transferase
RY45_14415	PF09012	FeoC like transcriptional regulator
RY45_14420	PF02421	Ferrous iron transport protein B
RY45_14420	PF07664	RY45_14420
RY45_14420	PF07670	Nucleoside recognition
RY45_14425	PF04023	FeoA domain
RY45_14430	PF01253	Translation initiation factor SUI1
RY45_14435	PF01169	RY45_14435
RY45_14440	PF09925	RY45_14440
RY45_14445	PF14351	RY45_14445
RY45_14450	PF14345	RY45_14450
RY45_14455	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_14460	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_14465	PF00990	GGDEF domain
RY45_14465	PF13492	GAF domain
RY45_14475	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
RY45_14480	PF01406	tRNA synthetases class I (C) catalytic domain
RY45_14480	PF09190	DALR domain
RY45_14485	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
RY45_14490	PF14091	RY45_14490
RY45_14495	PF00149	Calcineurin-like phosphoesterase
RY45_14500	PF03916	RY45_14500
RY45_14505	PF13247	4Fe-4S dicluster domain
RY45_14510	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
RY45_14510	PF13435	Cytochrome c554 and c-prime
RY45_14515	PF00034	Cytochrome c
RY45_14515	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
RY45_14525	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
RY45_14530	PF11854	RY45_14530
RY45_14535	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_14535	PF07238	PilZ domain
RY45_14540	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_14540	PF08447	PAS fold
RY45_14560	PF01066	CDP-alcohol phosphatidyltransferase
RY45_14565	PF01541	GIY-YIG catalytic domain
RY45_14565	PF02151	UvrB/uvrC motif
RY45_14565	PF08459	UvrC Helix-hairpin-helix N-terminal
RY45_14565	PF14520	Helix-hairpin-helix domain
RY45_14570	PF00072	Response regulator receiver domain
RY45_14570	PF00196	Bacterial regulatory proteins, luxR family
RY45_14575	PF02348	Cytidylyltransferase
RY45_14580	PF03966	Trm112p-like protein
RY45_14585	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
RY45_14590	PF00005	ABC transporter
RY45_14590	PF00664	ABC transporter transmembrane region
RY45_14595	PF00753	Metallo-beta-lactamase superfamily
RY45_14595	PF03772	RY45_14595
RY45_14595	PF13567	RY45_14595
RY45_14600	PF09835	RY45_14600
RY45_14605	PF09835	RY45_14605
RY45_14610	PF05872	RY45_14610
RY45_14615	PF06291	RY45_14615
RY45_14620	PF06291	RY45_14620
RY45_14630	PF06406	StbA protein
RY45_14635	PF12697	Alpha/beta hydrolase family
RY45_14640	PF00005	ABC transporter
RY45_14640	PF03459	TOBE domain
RY45_14645	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_14650	PF13531	Bacterial extracellular solute-binding protein
RY45_14655	PF02391	MoaE protein
RY45_14660	PF02597	ThiS family
RY45_14665	PF01967	MoaC family
RY45_14670	PF00994	Probable molybdopterin binding domain
RY45_14675	PF03264	NapC/NirT cytochrome c family, N-terminal region
RY45_14680	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
RY45_14685	PF12801	RY45_14685
RY45_14690	PF12800	4Fe-4S binding domain
RY45_14690	PF12838	4Fe-4S dicluster domain
RY45_14695	PF00384	Molybdopterin oxidoreductase
RY45_14695	PF01568	Molydopterin dinucleotide binding domain
RY45_14695	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
RY45_14695	PF10518	TAT (twin-arginine translocation) pathway signal sequence
RY45_14700	PF03927	NapD protein
RY45_14705	PF12838	4Fe-4S dicluster domain
RY45_14705	PF13237	4Fe-4S dicluster domain
RY45_14710	PF04055	Radical SAM superfamily
RY45_14710	PF06463	Molybdenum Cofactor Synthesis C
RY45_14710	PF13353	4Fe-4S single cluster domain
RY45_14715	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_14715	PF07730	Histidine kinase
RY45_14715	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
RY45_14720	PF00072	Response regulator receiver domain
RY45_14720	PF00196	Bacterial regulatory proteins, luxR family
RY45_14725	PF02190	ATP-dependent protease La (LON) domain
RY45_14730	PF00072	Response regulator receiver domain
RY45_14730	PF00512	His Kinase A (phospho-acceptor) domain
RY45_14730	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_14735	PF08495	RY45_14735
RY45_14735	PF10442	RY45_14735
RY45_14740	PF01933	Uncharacterised protein family UPF0052
RY45_14745	PF01627	Hpt domain
RY45_14750	PF13230	Glutamine amidotransferases class-II
RY45_14755	PF13580	SIS domain
RY45_14760	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
RY45_14760	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
RY45_14760	PF09317	RY45_14760
RY45_14765	PF01966	HD domain
RY45_14765	PF11849	RY45_14765
RY45_14770	PF00571	CBS domain
RY45_14770	PF01769	Divalent cation transporter
RY45_14770	PF03448	MgtE intracellular N domain
RY45_14775	PF00669	Bacterial flagellin N-terminal helical region
RY45_14780	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_14785	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
RY45_14785	PF10135	RY45_14785
RY45_14790	PF02119	RY45_14790
RY45_14795	PF02107	RY45_14795
RY45_14800	PF00460	Flagella basal body rod protein
RY45_14800	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_14805	PF00460	Flagella basal body rod protein
RY45_14805	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_14810	PF00460	Flagella basal body rod protein
RY45_14810	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_14810	PF07559	Flagellar basal body protein FlaE
RY45_14815	PF03963	RY45_14815
RY45_14815	PF13860	FlgD Ig-like domain
RY45_14815	PF13861	FlgD Tudor-like domain
RY45_14820	PF00460	Flagella basal body rod protein
RY45_14820	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_14825	PF00460	Flagella basal body rod protein
RY45_14830	PF01739	CheR methyltransferase, SAM binding domain
RY45_14830	PF03705	CheR methyltransferase, all-alpha domain
RY45_14835	PF00072	Response regulator receiver domain
RY45_14835	PF01584	CheW-like domain
RY45_14840	PF13144	SAF-like
RY45_14845	PF04316	Anti-sigma-28 factor, FlgM
RY45_14850	PF05130	FlgN protein
RY45_14855	PF12850	Calcineurin-like phosphoesterase superfamily domain
RY45_14860	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_14865	PF00892	EamA-like transporter family
RY45_14870	PF00849	RNA pseudouridylate synthase
RY45_14870	PF01479	S4 domain
RY45_14875	PF11871	RY45_14875
RY45_14875	PF13487	HD domain
RY45_14885	PF00923	Transaldolase
RY45_14890	PF04055	Radical SAM superfamily
RY45_14890	PF13353	4Fe-4S single cluster domain
RY45_14895	PF01228	Glycine radical
RY45_14895	PF02901	Pyruvate formate lyase
RY45_14900	PF00455	RY45_14900
RY45_14900	PF08220	DeoR-like helix-turn-helix domain
RY45_14905	PF00892	EamA-like transporter family
RY45_14910	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_14915	PF11042	RY45_14915
RY45_14935	PF00313	'Cold-shock' DNA-binding domain
RY45_14940	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
RY45_14940	PF00364	Biotin-requiring enzyme
RY45_14940	PF02817	e3 binding domain
RY45_14945	PF02779	Transketolase, pyrimidine binding domain
RY45_14945	PF02780	Transketolase, C-terminal domain
RY45_14950	PF00676	Dehydrogenase E1 component
RY45_14955	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
RY45_14960	PF06568	RY45_14960
RY45_14965	PF05472	DNA replication terminus site-binding protein (Ter protein)
RY45_14970	PF00176	SNF2 family N-terminal domain
RY45_14970	PF00271	Helicase conserved C-terminal domain
RY45_14975	PF04337	Protein of unknown function, DUF480
RY45_14980	PF04932	RY45_14980
RY45_14980	PF11846	RY45_14980
RY45_14980	PF15864	RY45_14980
RY45_14985	PF02706	Chain length determinant protein
RY45_14985	PF13807	RY45_14985
RY45_14990	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
RY45_14995	PF00483	Nucleotidyl transferase
RY45_15000	PF04321	RmlD substrate binding domain
RY45_15005	PF16363	RY45_15005
RY45_15010	PF02719	Polysaccharide biosynthesis protein
RY45_15010	PF13727	CoA-binding domain
RY45_15015	PF02397	RY45_15015
RY45_15020	PF00534	Glycosyl transferases group 1
RY45_15020	PF13477	Glycosyl transferase 4-like
RY45_15025	PF00733	Asparagine synthase
RY45_15025	PF13537	Glutamine amidotransferase domain
RY45_15030	PF01370	NAD dependent epimerase/dehydratase family
RY45_15035	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
RY45_15035	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
RY45_15035	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
RY45_15045	PF02321	Outer membrane efflux protein
RY45_15050	PF00873	AcrB/AcrD/AcrF family
RY45_15055	PF00529	HlyD family secretion protein
RY45_15055	PF16576	RY45_15055
RY45_15060	PF00440	Bacterial regulatory proteins, tetR family
RY45_15060	PF08361	MAATS-type transcriptional repressor, C-terminal region
RY45_15065	PF08241	Methyltransferase domain
RY45_15070	PF00375	Sodium:dicarboxylate symporter family
RY45_15080	PF13622	Thioesterase-like superfamily
RY45_15085	PF00849	RNA pseudouridylate synthase
RY45_15085	PF01479	S4 domain
RY45_15090	PF04079	Putative transcriptional regulators (Ypuh-like)
RY45_15095	PF02616	ScpA/B protein
RY45_15100	PF01300	Telomere recombination
RY45_15105	PF02811	PHP domain
RY45_15110	PF00425	chorismate binding enzyme
RY45_15110	PF04715	Anthranilate synthase component I, N terminal region
RY45_15115	PF00117	Glutamine amidotransferase class-I
RY45_15120	PF00591	Glycosyl transferase family, a/b domain
RY45_15120	PF02885	Glycosyl transferase family, helical bundle domain
RY45_15125	PF00218	Indole-3-glycerol phosphate synthase
RY45_15125	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
RY45_15130	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_15135	PF00290	Tryptophan synthase alpha chain
RY45_15145	PF04307	RY45_15145
RY45_15150	PF11730	RY45_15150
RY45_15155	PF00030	Beta/Gamma crystallin
RY45_15160	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
RY45_15165	PF01773	Na+ dependent nucleoside transporter N-terminus
RY45_15165	PF07662	Na+ dependent nucleoside transporter C-terminus
RY45_15165	PF07670	Nucleoside recognition
RY45_15175	PF02698	DUF218 domain
RY45_15180	PF05656	RY45_15180
RY45_15185	PF00561	alpha/beta hydrolase fold
RY45_15190	PF07690	Major Facilitator Superfamily
RY45_15195	PF01040	UbiA prenyltransferase family
RY45_15200	PF03626	RY45_15200
RY45_15205	PF00510	Cytochrome c oxidase subunit III
RY45_15210	PF00115	Cytochrome C and Quinol oxidase polypeptide I
RY45_15215	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
RY45_15215	PF06481	COX Aromatic Rich Motif
RY45_15220	PF13450	NAD(P)-binding Rossmann-like domain
RY45_15225	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
RY45_15230	PF12321	RY45_15230
RY45_15235	PF01156	Inosine-uridine preferring nucleoside hydrolase
RY45_15240	PF05962	HutD
RY45_15250	PF00127	Copper binding proteins, plastocyanin/azurin family
RY45_15255	PF02424	ApbE family
RY45_15260	PF07690	Major Facilitator Superfamily
RY45_15265	PF00072	Response regulator receiver domain
RY45_15265	PF13432	Tetratricopeptide repeat
RY45_15265	PF14559	Tetratricopeptide repeat
RY45_15270	PF00805	Pentapeptide repeats (8 copies)
RY45_15270	PF07885	Ion channel
RY45_15275	PF03372	Endonuclease/Exonuclease/phosphatase family
RY45_15280	PF13533	Biotin-lipoyl like
RY45_15285	PF00873	AcrB/AcrD/AcrF family
RY45_15295	PF11604	Copper binding periplasmic protein CusF
RY45_15295	PF16576	RY45_15295
RY45_15300	PF00873	AcrB/AcrD/AcrF family
RY45_15305	PF11604	Copper binding periplasmic protein CusF
RY45_15315	PF00282	Pyridoxal-dependent decarboxylase conserved domain
RY45_15320	PF03099	Biotin/lipoate A/B protein ligase family
RY45_15320	PF10437	Bacterial lipoate protein ligase C-terminus
RY45_15325	PF00990	GGDEF domain
RY45_15325	PF01814	Hemerythrin HHE cation binding domain
RY45_15325	PF08448	PAS fold
RY45_15325	PF09084	NMT1/THI5 like
RY45_15330	PF00873	AcrB/AcrD/AcrF family
RY45_15335	PF16576	RY45_15335
RY45_15345	PF04143	RY45_15345
RY45_15350	PF01022	Bacterial regulatory protein, arsR family
RY45_15355	PF11127	Protein of unknown function (DUF2892)
RY45_15365	PF02308	RY45_15365
RY45_15370	PF00226	DnaJ domain
RY45_15370	PF00684	DnaJ central domain
RY45_15370	PF01556	DnaJ C terminal domain
RY45_15375	PF00012	Hsp70 protein
RY45_15380	PF01025	GrpE
RY45_15385	PF01513	ATP-NAD kinase
RY45_15390	PF02463	RecF/RecN/SMC N terminal domain
RY45_15395	PF01368	DHH family
RY45_15395	PF02833	DHHA2 domain
RY45_15400	PF00582	Universal stress protein family
RY45_15405	PF16576	RY45_15405
RY45_15410	PF00005	ABC transporter
RY45_15410	PF02687	RY45_15410
RY45_15410	PF12704	MacB-like periplasmic core domain
RY45_15415	PF02321	Outer membrane efflux protein
RY45_15420	PF04954	Siderophore-interacting protein
RY45_15420	PF08021	Siderophore-interacting FAD-binding domain
RY45_15430	PF00793	DAHP synthetase I family
RY45_15435	PF00816	H-NS histone family
RY45_15440	PF13673	Acetyltransferase (GNAT) domain
RY45_15445	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
RY45_15450	PF05656	RY45_15450
RY45_15465	PF01266	FAD dependent oxidoreductase
RY45_15470	PF07883	Cupin domain
RY45_15470	PF13560	Helix-turn-helix domain
RY45_15475	PF00171	Aldehyde dehydrogenase family
RY45_15480	PF00202	Aminotransferase class-III
RY45_15485	PF13520	Amino acid permease
RY45_15495	PF13520	Amino acid permease
RY45_15505	PF02690	RY45_15505
RY45_15510	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
RY45_15510	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
RY45_15515	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
RY45_15520	PF00072	Response regulator receiver domain
RY45_15520	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_15520	PF00512	His Kinase A (phospho-acceptor) domain
RY45_15520	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_15520	PF08448	PAS fold
RY45_15525	PF00027	Cyclic nucleotide-binding domain
RY45_15530	PF07690	Major Facilitator Superfamily
RY45_15535	PF01048	Phosphorylase superfamily
RY45_15550	PF11008	RY45_15550
RY45_15560	PF00005	ABC transporter
RY45_15570	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_15570	PF14821	Threonine synthase N terminus
RY45_15575	PF00288	GHMP kinases N terminal domain
RY45_15575	PF08544	GHMP kinases C terminal
RY45_15580	PF00696	Amino acid kinase family
RY45_15580	PF00742	Homoserine dehydrogenase
RY45_15580	PF01842	ACT domain
RY45_15580	PF03447	Homoserine dehydrogenase, NAD binding domain
RY45_15580	PF13840	ACT domain
RY45_15585	PF00588	SpoU rRNA Methylase family
RY45_15590	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
RY45_15595	PF03724	META domain
RY45_15605	PF03737	Demethylmenaquinone methyltransferase
RY45_15610	PF11697	RY45_15610
RY45_15615	PF00072	Response regulator receiver domain
RY45_15615	PF00486	Transcriptional regulatory protein, C terminal
RY45_15630	PF00005	ABC transporter
RY45_15630	PF00664	ABC transporter transmembrane region
RY45_15635	PF00005	ABC transporter
RY45_15635	PF00664	ABC transporter transmembrane region
RY45_15640	PF16358	RY45_15640
RY45_15645	PF04343	RY45_15645
RY45_15650	PF01370	NAD dependent epimerase/dehydratase family
RY45_15655	PF01980	Uncharacterised protein family UPF0066
RY45_15660	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
RY45_15660	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
RY45_15665	PF05762	VWA domain containing CoxE-like protein
RY45_15670	PF00004	ATPase family associated with various cellular activities (AAA)
RY45_15675	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_15680	PF00381	PTS HPr component phosphorylation site
RY45_15685	PF00391	PEP-utilising enzyme, mobile domain
RY45_15685	PF02896	PEP-utilising enzyme, TIM barrel domain
RY45_15685	PF05524	PEP-utilising enzyme, N-terminal
RY45_15690	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
RY45_15695	PF00990	GGDEF domain
RY45_15705	PF01292	Prokaryotic cytochrome b561
RY45_15710	PF04519	RY45_15710
RY45_15715	PF13476	AAA domain
RY45_15715	PF13558	Putative exonuclease SbcCD, C subunit
RY45_15725	PF00149	Calcineurin-like phosphoesterase
RY45_15725	PF12320	Type 5 capsule protein repressor C-terminal domain
RY45_15730	PF13508	Acetyltransferase (GNAT) domain
RY45_15735	PF04381	Putative exonuclease, RdgC
RY45_15740	PF01019	Gamma-glutamyltranspeptidase
RY45_15745	PF00999	Sodium/hydrogen exchanger family
RY45_15745	PF02254	TrkA-N domain
RY45_15750	PF04389	Peptidase family M28
RY45_15760	PF00224	Pyruvate kinase, barrel domain
RY45_15760	PF02887	Pyruvate kinase, alpha/beta domain
RY45_15765	PF00924	Mechanosensitive ion channel
RY45_15765	PF12794	RY45_15765
RY45_15765	PF12795	RY45_15765
RY45_15775	PF10282	Lactonase, 7-bladed beta-propeller
RY45_15780	PF00860	Permease family
RY45_15790	PF16998	RY45_15790
RY45_15795	PF00390	Malic enzyme, N-terminal domain
RY45_15795	PF03949	Malic enzyme, NAD binding domain
RY45_15800	PF00072	Response regulator receiver domain
RY45_15800	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_15805	PF01292	Prokaryotic cytochrome b561
RY45_15810	PF13247	4Fe-4S dicluster domain
RY45_15815	PF00384	Molybdopterin oxidoreductase
RY45_15815	PF01568	Molydopterin dinucleotide binding domain
RY45_15815	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
RY45_15825	PF02613	Nitrate reductase delta subunit
RY45_15830	PF00037	4Fe-4S binding domain
RY45_15830	PF12838	4Fe-4S dicluster domain
RY45_15835	PF11748	RY45_15835
RY45_15840	PF11749	RY45_15840
RY45_15845	PF02634	FdhD/NarQ family
RY45_15850	PF12727	PBP superfamily domain
RY45_15850	PF12728	Helix-turn-helix domain
RY45_15855	PF00512	His Kinase A (phospho-acceptor) domain
RY45_15855	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_15855	PF17202	RY45_15855
RY45_15860	PF00072	Response regulator receiver domain
RY45_15860	PF00158	Sigma-54 interaction domain
RY45_15860	PF02954	Bacterial regulatory protein, Fis family
RY45_15865	PF12849	PBP superfamily domain
RY45_15870	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_15875	PF00005	ABC transporter
RY45_15880	PF12804	MobA-like NTP transferase domain
RY45_15885	PF00994	Probable molybdopterin binding domain
RY45_15885	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
RY45_15885	PF03453	MoeA N-terminal region (domain I and II)
RY45_15885	PF03454	MoeA C-terminal region (domain IV)
RY45_15890	PF04632	RY45_15890
RY45_15895	PF13487	HD domain
RY45_15900	PF11810	RY45_15900
RY45_15905	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_15905	PF08447	PAS fold
RY45_15905	PF13426	PAS domain
RY45_15910	PF00583	Acetyltransferase (GNAT) family
RY45_15915	PF07681	RY45_15915
RY45_15920	PF09836	Uncharacterized protein conserved in bacteria (DUF2063)
RY45_15925	PF05114	Protein of unknown function (DUF692)
RY45_15930	PF10048	RY45_15930
RY45_15935	PF10725	RY45_15935
RY45_15955	PF00072	Response regulator receiver domain
RY45_15955	PF00512	His Kinase A (phospho-acceptor) domain
RY45_15955	PF00672	HAMP domain
RY45_15955	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_15960	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_15965	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_15970	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_15970	PF12911	RY45_15970
RY45_15975	PF00005	ABC transporter
RY45_15975	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
RY45_15980	PF00005	ABC transporter
RY45_15980	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
RY45_15985	PF00759	Glycosyl hydrolase family 9
RY45_15985	PF02927	N-terminal ig-like domain of cellulase
RY45_15990	PF01869	BadF/BadG/BcrA/BcrD ATPase family
RY45_15995	PF00728	Glycosyl hydrolase family 20, catalytic domain
RY45_15995	PF02838	Glycosyl hydrolase family 20, domain 2
RY45_16000	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_16000	PF08447	PAS fold
RY45_16005	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
RY45_16010	PF01131	DNA topoisomerase
RY45_16010	PF01396	RY45_16010
RY45_16010	PF01751	Toprim domain
RY45_16010	PF08272	Topoisomerase I zinc-ribbon-like
RY45_16015	PF04996	Succinylarginine dihydrolase
RY45_16020	PF01343	Peptidase family S49
RY45_16020	PF08496	RY45_16020
RY45_16025	PF00106	short chain dehydrogenase
RY45_16030	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_16030	PF03466	LysR substrate binding domain
RY45_16035	PF07690	Major Facilitator Superfamily
RY45_16040	PF00155	Aminotransferase class I and II
RY45_16045	PF16868	RY45_16045
RY45_16050	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_16050	PF03466	LysR substrate binding domain
RY45_16055	PF00709	Adenylosuccinate synthetase
RY45_16060	PF01161	Phosphatidylethanolamine-binding protein
RY45_16065	PF12833	Helix-turn-helix domain
RY45_16070	PF01204	Trehalase
RY45_16075	PF00579	tRNA synthetases class I (W and Y)
RY45_16075	PF01479	S4 domain
RY45_16080	PF01551	Peptidase family M23
RY45_16080	PF04225	Opacity-associated protein A LysM-like domain
RY45_16080	PF08525	RY45_16080
RY45_16085	PF03702	Uncharacterised protein family (UPF0075)
RY45_16090	PF01965	DJ-1/PfpI family
RY45_16095	PF01042	Endoribonuclease L-PSP
RY45_16105	PF00456	Transketolase, thiamine diphosphate binding domain
RY45_16105	PF02779	Transketolase, pyrimidine binding domain
RY45_16105	PF02780	Transketolase, C-terminal domain
RY45_16110	PF00438	S-adenosylmethionine synthetase, N-terminal domain
RY45_16110	PF02772	S-adenosylmethionine synthetase, central domain
RY45_16110	PF02773	S-adenosylmethionine synthetase, C-terminal domain
RY45_16115	PF10263	RY45_16115
RY45_16115	PF17283	RY45_16115
RY45_16120	PF04231	Endonuclease I
RY45_16125	PF04452	RNA methyltransferase
RY45_16130	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
RY45_16130	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
RY45_16135	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_16135	PF12729	RY45_16135
RY45_16140	PF02622	Uncharacterized ACR, COG1678
RY45_16145	PF03652	Uncharacterised protein family (UPF0081)
RY45_16150	PF00854	POT family
RY45_16155	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_16155	PF03466	LysR substrate binding domain
RY45_16165	PF06291	RY45_16165
RY45_16170	PF00144	Beta-lactamase
RY45_16175	PF07726	ATPase family associated with various cellular activities (AAA)
RY45_16180	PF01882	RY45_16180
RY45_16185	PF01841	Transglutaminase-like superfamily
RY45_16185	PF11992	RY45_16185
RY45_16190	PF01235	RY45_16190
RY45_16195	PF00923	Transaldolase
RY45_16200	PF12065	RY45_16200
RY45_16205	PF01814	Hemerythrin HHE cation binding domain
RY45_16210	PF03167	Uracil DNA glycosylase superfamily
RY45_16215	PF01228	Glycine radical
RY45_16220	PF00375	Sodium:dicarboxylate symporter family
RY45_16225	PF00793	DAHP synthetase I family
RY45_16230	PF13369	RY45_16230
RY45_16230	PF13371	Tetratricopeptide repeat
RY45_16235	PF04247	RY45_16235
RY45_16240	PF05175	Methyltransferase small domain
RY45_16245	PF00472	RF-1 domain
RY45_16245	PF03462	PCRF domain
RY45_16250	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
RY45_16250	PF01488	Shikimate / quinate 5-dehydrogenase
RY45_16250	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
RY45_16255	PF03550	Outer membrane lipoprotein LolB
RY45_16270	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
RY45_16270	PF14572	Phosphoribosyl synthetase-associated domain
RY45_16275	PF00149	Calcineurin-like phosphoesterase
RY45_16275	PF02872	5'-nucleotidase, C-terminal domain
RY45_16280	PF01195	Peptidyl-tRNA hydrolase
RY45_16285	PF01926	50S ribosome-binding GTPase
RY45_16285	PF06071	Protein of unknown function (DUF933)
RY45_16330	PF02080	TrkA-C domain
RY45_16330	PF03600	Citrate transporter
RY45_16335	PF04973	RY45_16335
RY45_16340	PF01048	Phosphorylase superfamily
RY45_16345	PF00027	Cyclic nucleotide-binding domain
RY45_16350	PF04266	ASCH domain
RY45_16355	PF07784	RY45_16355
RY45_16360	PF00128	Alpha amylase, catalytic domain
RY45_16360	PF11941	Domain of unknown function (DUF3459)
RY45_16370	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
RY45_16370	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
RY45_16370	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
RY45_16370	PF10371	Domain of unknown function
RY45_16370	PF12838	4Fe-4S dicluster domain
RY45_16370	PF17147	RY45_16370
RY45_16375	PF07690	Major Facilitator Superfamily
RY45_16380	PF13419	Haloacid dehalogenase-like hydrolase
RY45_16385	PF12762	RY45_16385
RY45_16390	PF07063	Domain of unknown function (DUF1338)
RY45_16395	PF00171	Aldehyde dehydrogenase family
RY45_16400	PF04958	Arginine N-succinyltransferase beta subunit
RY45_16405	PF00202	Aminotransferase class-III
RY45_16410	PF00117	Glutamine amidotransferase class-I
RY45_16420	PF00579	tRNA synthetases class I (W and Y)
RY45_16425	PF13419	Haloacid dehalogenase-like hydrolase
RY45_16430	PF00834	Ribulose-phosphate 3 epimerase family
RY45_16435	PF02086	D12 class N6 adenine-specific DNA methyltransferase
RY45_16440	PF05036	Sporulation related domain
RY45_16445	PF01761	3-dehydroquinate synthase
RY45_16450	PF01202	Shikimate kinase
RY45_16455	PF00263	RY45_16455
RY45_16455	PF03958	Bacterial type II/III secretion system short domain
RY45_16460	PF04351	Pilus assembly protein, PilP
RY45_16465	PF04350	Pilus assembly protein, PilO
RY45_16470	PF05137	RY45_16470
RY45_16475	PF11104	Type IV pilus assembly protein PilM;
RY45_16480	PF00905	Penicillin binding protein transpeptidase domain
RY45_16480	PF00912	Transglycosylase
RY45_16480	PF17092	RY45_16480
RY45_16485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_16485	PF03466	LysR substrate binding domain
RY45_16490	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_16490	PF00672	HAMP domain
RY45_16490	PF12729	RY45_16490
RY45_16505	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_16505	PF03466	LysR substrate binding domain
RY45_16520	PF01551	Peptidase family M23
RY45_16525	PF01554	MatE
RY45_16530	PF00924	Mechanosensitive ion channel
RY45_16530	PF12794	RY45_16530
RY45_16530	PF12795	RY45_16530
RY45_16535	PF03009	Glycerophosphoryl diester phosphodiesterase family
RY45_16540	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_16540	PF00672	HAMP domain
RY45_16540	PF02743	Cache domain
RY45_16545	PF00890	FAD binding domain
RY45_16545	PF02910	Fumarate reductase flavoprotein C-term
RY45_16550	PF13085	2Fe-2S iron-sulfur cluster binding domain
RY45_16550	PF13183	4Fe-4S dicluster domain
RY45_16555	PF02300	Fumarate reductase subunit C
RY45_16560	PF02313	Fumarate reductase subunit D
RY45_16570	PF00440	Bacterial regulatory proteins, tetR family
RY45_16580	PF06224	RY45_16580
RY45_16585	PF13489	Methyltransferase domain
RY45_16590	PF12261	RY45_16590
RY45_16595	PF00501	AMP-binding enzyme
RY45_16600	PF14518	Iron-containing redox enzyme
RY45_16605	PF00106	short chain dehydrogenase
RY45_16610	PF13181	Tetratricopeptide repeat
RY45_16615	PF00072	Response regulator receiver domain
RY45_16615	PF00486	Transcriptional regulatory protein, C terminal
RY45_16620	PF00512	His Kinase A (phospho-acceptor) domain
RY45_16620	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_16620	PF08521	RY45_16620
RY45_16625	PF05618	Putative ATP-dependant zinc protease
RY45_16630	PF00478	IMP dehydrogenase / GMP reductase domain
RY45_16635	PF10093	RY45_16635
RY45_16640	PF01132	Elongation factor P (EF-P) OB domain
RY45_16640	PF08207	Elongation factor P (EF-P) KOW-like domain
RY45_16640	PF09285	Elongation factor P, C-terminal
RY45_16645	PF09997	RY45_16645
RY45_16650	PF12048	RY45_16650
RY45_16655	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
RY45_16655	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
RY45_16660	PF13488	RY45_16660
RY45_16665	PF00990	GGDEF domain
RY45_16670	PF00881	Nitroreductase family
RY45_16675	PF13419	Haloacid dehalogenase-like hydrolase
RY45_16685	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_16685	PF03466	LysR substrate binding domain
RY45_16690	PF00990	GGDEF domain
RY45_16690	PF08448	PAS fold
RY45_16695	PF00313	'Cold-shock' DNA-binding domain
RY45_16695	PF05901	RY45_16695
RY45_16700	PF00857	Isochorismatase family
RY45_16705	PF01494	FAD binding domain
RY45_16710	PF00919	Uncharacterized protein family UPF0004
RY45_16710	PF01938	TRAM domain
RY45_16710	PF04055	Radical SAM superfamily
RY45_16715	PF02562	PhoH-like protein
RY45_16720	PF02130	Uncharacterized protein family UPF0054
RY45_16725	PF00571	CBS domain
RY45_16725	PF03471	Transporter associated domain
RY45_16730	PF00795	Carbon-nitrogen hydrolase
RY45_16735	PF07295	RY45_16735
RY45_16740	PF00133	tRNA synthetases class I (I, L, M and V)
RY45_16740	PF08264	Anticodon-binding domain of tRNA
RY45_16740	PF13603	Leucyl-tRNA synthetase, Domain 2
RY45_16745	PF04390	Lipopolysaccharide-assembly
RY45_16755	PF06144	DNA polymerase III, delta subunit
RY45_16755	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
RY45_16760	PF01467	Cytidylyltransferase
RY45_16765	PF02410	Oligomerisation domain
RY45_16770	PF02590	Predicted SPOUT methyltransferase
RY45_16775	PF00905	Penicillin binding protein transpeptidase domain
RY45_16775	PF03717	Penicillin-binding Protein dimerisation domain
RY45_16780	PF01098	RY45_16780
RY45_16785	PF13406	Transglycosylase SLT domain
RY45_16790	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
RY45_16790	PF05036	Sporulation related domain
RY45_16795	PF00768	D-alanyl-D-alanine carboxypeptidase
RY45_16795	PF07943	Penicillin-binding protein 5, C-terminal domain
RY45_16800	PF04359	Protein of unknown function (DUF493)
RY45_16805	PF03099	Biotin/lipoate A/B protein ligase family
RY45_16810	PF04055	Radical SAM superfamily
RY45_16810	PF16881	RY45_16810
RY45_16830	PF05621	RY45_16830
RY45_16835	PF00665	Integrase core domain
RY45_16835	PF09299	Mu transposase, C-terminal
RY45_16840	PF08721	TnsA endonuclease C terminal
RY45_16840	PF08722	TnsA endonuclease N terminal
RY45_16845	PF00583	Acetyltransferase (GNAT) family
RY45_16850	PF06821	Serine hydrolase
RY45_16855	PF02508	RY45_16855
RY45_16865	PF13508	Acetyltransferase (GNAT) domain
RY45_16870	PF13411	MerR HTH family regulatory protein
RY45_16870	PF13649	Methyltransferase domain
RY45_16875	PF01368	DHH family
RY45_16875	PF02272	DHHA1 domain
RY45_16880	PF10411	Disulfide bond isomerase protein N-terminus
RY45_16880	PF13098	Thioredoxin-like domain
RY45_16885	PF01741	Large-conductance mechanosensitive channel, MscL
RY45_16890	PF00589	Phage integrase family
RY45_16890	PF02899	Phage integrase, N-terminal SAM-like domain
RY45_16895	PF00258	Flavodoxin
RY45_16900	PF01523	Putative modulator of DNA gyrase
RY45_16905	PF01523	Putative modulator of DNA gyrase
RY45_16915	PF01476	LysM domain
RY45_16915	PF03734	L,D-transpeptidase catalytic domain
RY45_16920	PF00201	UDP-glucoronosyl and UDP-glucosyl transferase
RY45_16925	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
RY45_16930	PF05141	Pyoverdine/dityrosine biosynthesis protein
RY45_16935	PF01734	Patatin-like phospholipase
RY45_16940	PF03372	Endonuclease/Exonuclease/phosphatase family
RY45_16945	PF00384	Molybdopterin oxidoreductase
RY45_16945	PF01568	Molydopterin dinucleotide binding domain
RY45_16950	PF03916	RY45_16950
RY45_16955	PF13247	4Fe-4S dicluster domain
RY45_16960	PF00512	His Kinase A (phospho-acceptor) domain
RY45_16960	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_16960	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
RY45_16965	PF00072	Response regulator receiver domain
RY45_16965	PF00196	Bacterial regulatory proteins, luxR family
RY45_16970	PF06580	RY45_16970
RY45_16970	PF07694	5TMR of 5TMR-LYT
RY45_16975	PF00072	Response regulator receiver domain
RY45_16975	PF04397	LytTr DNA-binding domain
RY45_16980	PF02554	RY45_16980
RY45_16980	PF13722	RY45_16980
RY45_16985	PF03575	Peptidase family S51
RY45_16990	PF00206	Lyase
RY45_16990	PF10415	Fumarase C C-terminus
RY45_16995	PF06476	RY45_16995
RY45_17000	PF02635	DsrE/DsrF-like family
RY45_17005	PF00990	GGDEF domain
RY45_17005	PF11563	Protoglobin
RY45_17010	PF07690	Major Facilitator Superfamily
RY45_17015	PF00013	KH domain
RY45_17015	PF00575	S1 RNA binding domain
RY45_17015	PF01138	3' exoribonuclease family, domain 1
RY45_17015	PF03725	3' exoribonuclease family, domain 2
RY45_17015	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
RY45_17020	PF00312	Ribosomal protein S15
RY45_17025	PF01509	TruB family pseudouridylate synthase (N terminal domain)
RY45_17025	PF09157	Pseudouridine synthase II TruB, C-terminal
RY45_17025	PF16198	RY45_17025
RY45_17030	PF02033	Ribosome-binding factor A
RY45_17035	PF00009	Elongation factor Tu GTP binding domain
RY45_17035	PF04760	Translation initiation factor IF-2, N-terminal region
RY45_17035	PF08364	RY45_17035
RY45_17035	PF11987	Translation-initiation factor 2
RY45_17040	PF08529	NusA N-terminal domain
RY45_17040	PF13184	NusA-like KH domain
RY45_17040	PF14520	Helix-hairpin-helix domain
RY45_17045	PF02576	Uncharacterised BCR, YhbC family COG0779
RY45_17045	PF17384	RY45_17045
RY45_17060	PF03840	Preprotein translocase SecG subunit
RY45_17065	PF00121	Triosephosphate isomerase
RY45_17070	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
RY45_17070	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
RY45_17070	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
RY45_17070	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
RY45_17075	PF00809	Pterin binding enzyme
RY45_17080	PF00004	ATPase family associated with various cellular activities (AAA)
RY45_17080	PF01434	Peptidase family M41
RY45_17080	PF06480	FtsH Extracellular
RY45_17085	PF01728	FtsJ-like methyltransferase
RY45_17090	PF01985	CRS1 / YhbY (CRM) domain
RY45_17100	PF01272	Transcription elongation factor, GreA/GreB, C-term
RY45_17100	PF03449	Transcription elongation factor, N-terminal
RY45_17105	PF00691	OmpA family
RY45_17105	PF13677	RY45_17105
RY45_17110	PF01618	RY45_17110
RY45_17115	PF02609	Exonuclease VII small subunit
RY45_17120	PF00348	Polyprenyl synthetase
RY45_17125	PF02779	Transketolase, pyrimidine binding domain
RY45_17125	PF02780	Transketolase, C-terminal domain
RY45_17125	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
RY45_17130	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_17130	PF12911	RY45_17130
RY45_17135	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_17140	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_17145	PF00005	ABC transporter
RY45_17145	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
RY45_17150	PF04608	Phosphatidylglycerophosphatase A
RY45_17155	PF00586	AIR synthase related protein, N-terminal domain
RY45_17155	PF02769	AIR synthase related protein, C-terminal domain
RY45_17160	PF01029	NusB family
RY45_17165	PF00885	6,7-dimethyl-8-ribityllumazine synthase
RY45_17170	PF00089	Trypsin
RY45_17175	PF00925	GTP cyclohydrolase II
RY45_17175	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
RY45_17180	PF00677	Lumazine binding domain
RY45_17185	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
RY45_17185	PF01872	RibD C-terminal domain
RY45_17190	PF03477	ATP cone domain
RY45_17200	PF00464	Serine hydroxymethyltransferase
RY45_17210	PF04828	Glutathione-dependent formaldehyde-activating enzyme
RY45_17215	PF02613	Nitrate reductase delta subunit
RY45_17235	PF00563	EAL domain
RY45_17235	PF00990	GGDEF domain
RY45_17235	PF08448	PAS fold
RY45_17235	PF13426	PAS domain
RY45_17245	PF00501	AMP-binding enzyme
RY45_17245	PF13193	AMP-binding enzyme C-terminal domain
RY45_17245	PF16177	RY45_17245
RY45_17250	PF01220	Dehydroquinase class II
RY45_17255	PF00364	Biotin-requiring enzyme
RY45_17260	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
RY45_17260	PF02785	Biotin carboxylase C-terminal domain
RY45_17260	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
RY45_17265	PF06196	RY45_17265
RY45_17270	PF00474	Sodium:solute symporter family
RY45_17275	PF00367	phosphotransferase system, EIIB
RY45_17275	PF02378	Phosphotransferase system, EIIC
RY45_17280	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_17280	PF03466	LysR substrate binding domain
RY45_17285	PF08240	Alcohol dehydrogenase GroES-like domain
RY45_17285	PF13602	Zinc-binding dehydrogenase
RY45_17290	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
RY45_17295	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
RY45_17295	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
RY45_17300	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_17300	PF12464	Maltose acetyltransferase
RY45_17305	PF00881	Nitroreductase family
RY45_17310	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
RY45_17310	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_17315	PF01343	Peptidase family S49
RY45_17320	PF00293	NUDIX domain
RY45_17325	PF11207	RY45_17325
RY45_17330	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
RY45_17330	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
RY45_17335	PF07023	RY45_17335
RY45_17340	PF00710	Asparaginase
RY45_17345	PF03616	RY45_17345
RY45_17350	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_17350	PF00672	HAMP domain
RY45_17350	PF02743	Cache domain
RY45_17355	PF00472	RF-1 domain
RY45_17355	PF03462	PCRF domain
RY45_17360	PF00152	tRNA synthetases class II (D, K and N)
RY45_17360	PF01336	OB-fold nucleic acid binding domain
RY45_17365	PF02567	Phenazine biosynthesis-like protein
RY45_17370	PF00175	Oxidoreductase NAD-binding domain
RY45_17370	PF00258	Flavodoxin
RY45_17370	PF00667	FAD binding domain
RY45_17375	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
RY45_17375	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
RY45_17380	PF01507	Phosphoadenosine phosphosulfate reductase family
RY45_17385	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
RY45_17390	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_17395	PF00005	ABC transporter
RY45_17395	PF00571	CBS domain
RY45_17400	PF00186	Dihydrofolate reductase
RY45_17405	PF12821	RY45_17405
RY45_17410	PF06738	RY45_17410
RY45_17415	PF11333	RY45_17415
RY45_17420	PF00994	Probable molybdopterin binding domain
RY45_17425	PF10807	RY45_17425
RY45_17430	PF00109	Beta-ketoacyl synthase, N-terminal domain
RY45_17430	PF02801	Beta-ketoacyl synthase, C-terminal domain
RY45_17435	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_17445	PF00109	Beta-ketoacyl synthase, N-terminal domain
RY45_17445	PF02801	Beta-ketoacyl synthase, C-terminal domain
RY45_17450	PF11659	RY45_17450
RY45_17460	PF03548	Outer membrane lipoprotein carrier protein LolA
RY45_17465	PF03061	Thioesterase superfamily
RY45_17470	PF00221	Aromatic amino acid lyase
RY45_17475	PF00535	Glycosyl transferase family 2
RY45_17475	PF03279	RY45_17475
RY45_17480	PF07977	FabA-like domain
RY45_17485	PF00501	AMP-binding enzyme
RY45_17495	PF00550	Phosphopantetheine attachment site
RY45_17500	PF00550	Phosphopantetheine attachment site
RY45_17505	PF01553	Acyltransferase
RY45_17510	PF13723	RY45_17510
RY45_17520	PF00891	O-methyltransferase
RY45_17530	PF01223	DNA/RNA non-specific endonuclease
RY45_17535	PF00034	Cytochrome c
RY45_17535	PF03150	Di-haem cytochrome c peroxidase
RY45_17540	PF00194	Eukaryotic-type carbonic anhydrase
RY45_17545	PF04227	Indigoidine synthase A like protein
RY45_17550	PF00294	pfkB family carbohydrate kinase
RY45_17550	PF13412	Winged helix-turn-helix DNA-binding
RY45_17555	PF13806	Rieske-like [2Fe-2S] domain
RY45_17560	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
RY45_17560	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
RY45_17560	PF04324	BFD-like [2Fe-2S] binding domain
RY45_17560	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_17565	PF00005	ABC transporter
RY45_17570	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_17575	PF13379	NMT1-like family
RY45_17580	PF03861	ANTAR domain
RY45_17585	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
RY45_17590	PF00384	Molybdopterin oxidoreductase
RY45_17590	PF01568	Molydopterin dinucleotide binding domain
RY45_17590	PF04324	BFD-like [2Fe-2S] binding domain
RY45_17590	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
RY45_17595	PF00588	SpoU rRNA Methylase family
RY45_17605	PF00582	Universal stress protein family
RY45_17610	PF13645	RY45_17610
RY45_17615	PF00171	Aldehyde dehydrogenase family
RY45_17620	PF00696	Amino acid kinase family
RY45_17620	PF01472	PUA domain
RY45_17625	PF07417	Transcriptional regulator Crl
RY45_17630	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
RY45_17635	PF00156	Phosphoribosyl transferase domain
RY45_17640	PF01546	Peptidase family M20/M25/M40
RY45_17640	PF07687	Peptidase dimerisation domain
RY45_17645	PF00005	ABC transporter
RY45_17645	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
RY45_17650	PF00005	ABC transporter
RY45_17650	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
RY45_17655	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_17660	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_17665	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_17670	PF00593	TonB dependent receptor
RY45_17670	PF07715	TonB-dependent Receptor Plug Domain
RY45_17675	PF11932	RY45_17675
RY45_17680	PF01618	RY45_17680
RY45_17685	PF01618	RY45_17685
RY45_17690	PF02472	Biopolymer transport protein ExbD/TolR
RY45_17695	PF03544	Gram-negative bacterial TonB protein C-terminal
RY45_17700	PF13181	Tetratricopeptide repeat
RY45_17700	PF13432	Tetratricopeptide repeat
RY45_17715	PF12762	RY45_17715
RY45_17750	PF00749	tRNA synthetases class I (E and Q), catalytic domain
RY45_17755	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_17755	PF00672	HAMP domain
RY45_17760	PF04225	Opacity-associated protein A LysM-like domain
RY45_17765	PF00313	'Cold-shock' DNA-binding domain
RY45_17795	PF00929	Exonuclease
RY45_17800	PF03193	Protein of unknown function, DUF258
RY45_17805	PF02666	RY45_17805
RY45_17810	PF09905	Uncharacterized conserved protein (DUF2132)
RY45_17815	PF11173	RY45_17815
RY45_17825	PF04224	RY45_17825
RY45_17830	PF02627	Carboxymuconolactone decarboxylase family
RY45_17835	PF12833	Helix-turn-helix domain
RY45_17835	PF12852	Cupin
RY45_17845	PF00563	EAL domain
RY45_17845	PF00990	GGDEF domain
RY45_17845	PF08448	PAS fold
RY45_17845	PF13188	PAS domain
RY45_17850	PF06877	Regulator of ribonuclease activity B
RY45_17855	PF05547	RY45_17855
RY45_17870	PF00561	alpha/beta hydrolase fold
RY45_17875	PF00005	ABC transporter
RY45_17875	PF00664	ABC transporter transmembrane region
RY45_17880	PF06004	Bacterial protein of unknown function (DUF903)
RY45_17885	PF00082	Subtilase family
RY45_17890	PF00581	Rhodanese-like domain
RY45_17895	PF04960	Glutaminase
RY45_17900	PF04320	RY45_17900
RY45_17905	PF02390	Putative methyltransferase
RY45_17910	PF04389	Peptidase family M28
RY45_17915	PF00155	Aminotransferase class I and II
RY45_17920	PF00563	EAL domain
RY45_17920	PF12792	RY45_17920
RY45_17925	PF01370	NAD dependent epimerase/dehydratase family
RY45_17925	PF08338	Domain of unknown function (DUF1731)
RY45_17930	PF02687	RY45_17930
RY45_17935	PF00005	ABC transporter
RY45_17940	PF13472	GDSL-like Lipase/Acylhydrolase family
RY45_17945	PF00072	Response regulator receiver domain
RY45_17945	PF01584	CheW-like domain
RY45_17955	PF02080	TrkA-C domain
RY45_17955	PF06826	RY45_17955
RY45_17960	PF03006	RY45_17960
RY45_17965	PF00282	Pyridoxal-dependent decarboxylase conserved domain
RY45_17970	PF04279	RY45_17970
RY45_17975	PF03795	YCII-related domain
RY45_17980	PF00459	Inositol monophosphatase family
RY45_17985	PF12836	Helix-hairpin-helix motif
RY45_17990	PF00483	Nucleotidyl transferase
RY45_17995	PF00854	POT family
RY45_18000	PF00072	Response regulator receiver domain
RY45_18010	PF01695	IstB-like ATP binding protein
RY45_18015	PF13460	NADH(P)-binding
RY45_18020	PF12698	ABC-2 family transporter protein
RY45_18025	PF12698	ABC-2 family transporter protein
RY45_18030	PF13437	HlyD family secretion protein
RY45_18030	PF13533	Biotin-lipoyl like
RY45_18035	PF02321	Outer membrane efflux protein
RY45_18040	PF01207	Dihydrouridine synthase (Dus)
RY45_18045	PF02954	Bacterial regulatory protein, Fis family
RY45_18050	PF01810	RY45_18050
RY45_18075	PF01521	Iron-sulphur cluster biosynthesis
RY45_18085	PF00654	Voltage gated chloride channel
RY45_18090	PF00202	Aminotransferase class-III
RY45_18100	PF01925	RY45_18100
RY45_18105	PF01569	PAP2 superfamily
RY45_18110	PF11157	RY45_18110
RY45_18115	PF00072	Response regulator receiver domain
RY45_18115	PF01966	HD domain
RY45_18115	PF11849	RY45_18115
RY45_18120	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_18120	PF03466	LysR substrate binding domain
RY45_18125	PF00893	Small Multidrug Resistance protein
RY45_18130	PF00893	Small Multidrug Resistance protein
RY45_18135	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_18140	PF00905	Penicillin binding protein transpeptidase domain
RY45_18140	PF00912	Transglycosylase
RY45_18140	PF14814	Bifunctional transglycosylase second domain
RY45_18145	PF00270	DEAD/DEAH box helicase
RY45_18145	PF00271	Helicase conserved C-terminal domain
RY45_18145	PF04408	Helicase associated domain (HA2)
RY45_18145	PF08482	RY45_18145
RY45_18155	PF03749	Sugar fermentation stimulation protein
RY45_18160	PF01258	Prokaryotic dksA/traR C4-type zinc finger
RY45_18165	PF00749	tRNA synthetases class I (E and Q), catalytic domain
RY45_18170	PF01743	Poly A polymerase head domain
RY45_18170	PF12626	Polymerase A arginine-rich C-terminus
RY45_18170	PF12627	Probable RNA and SrmB- binding site of polymerase A
RY45_18175	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
RY45_18180	PF02548	Ketopantoate hydroxymethyltransferase
RY45_18185	PF02569	Pantoate-beta-alanine ligase
RY45_18190	PF00581	Rhodanese-like domain
RY45_18200	PF05932	Tir chaperone protein (CesT) family
RY45_18210	PF11823	RY45_18210
RY45_18215	PF01869	BadF/BadG/BcrA/BcrD ATPase family
RY45_18220	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component
RY45_18225	PF01061	RY45_18225
RY45_18230	PF00005	ABC transporter
RY45_18235	PF00156	Phosphoribosyl transferase domain
RY45_18240	PF00440	Bacterial regulatory proteins, tetR family
RY45_18245	PF02441	Flavoprotein
RY45_18250	PF01225	Mur ligase family, catalytic domain
RY45_18250	PF02875	Mur ligase family, glutamate ligase domain
RY45_18250	PF08245	Mur ligase middle domain
RY45_18255	PF00719	Inorganic pyrophosphatase
RY45_18270	PF09695	RY45_18270
RY45_18280	PF10986	RY45_18280
RY45_18285	PF00005	ABC transporter
RY45_18290	PF02687	RY45_18290
RY45_18290	PF12704	MacB-like periplasmic core domain
RY45_18295	PF11736	Protein of unknown function (DUF3299)
RY45_18300	PF10987	RY45_18300
RY45_18305	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_18305	PF08447	PAS fold
RY45_18315	PF01583	Adenylylsulphate kinase
RY45_18320	PF02080	TrkA-C domain
RY45_18320	PF03600	Citrate transporter
RY45_18325	PF00009	Elongation factor Tu GTP binding domain
RY45_18330	PF01507	Phosphoadenosine phosphosulfate reductase family
RY45_18335	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
RY45_18335	PF10414	Sirohaem synthase dimerisation region
RY45_18335	PF13241	Putative NAD(P)-binding
RY45_18335	PF14824	Sirohaem biosynthesis protein central
RY45_18340	PF01145	SPFH domain / Band 7 family
RY45_18345	PF01957	NfeD-like C-terminal, partner-binding
RY45_18350	PF00571	CBS domain
RY45_18355	PF00005	ABC transporter
RY45_18355	PF12848	ABC transporter
RY45_18355	PF16326	RY45_18355
RY45_18360	PF09523	RY45_18360
RY45_18365	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
RY45_18375	PF14082	RY45_18375
RY45_18380	PF09834	RY45_18380
RY45_18385	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_18390	PF13411	MerR HTH family regulatory protein
RY45_18395	PF02525	Flavodoxin-like fold
RY45_18400	PF00474	Sodium:solute symporter family
RY45_18405	PF03734	L,D-transpeptidase catalytic domain
RY45_18410	PF00924	Mechanosensitive ion channel
RY45_18415	PF00871	Acetokinase family
RY45_18420	PF04074	Domain of unknown function (DUF386)
RY45_18425	PF01553	Acyltransferase
RY45_18430	PF07731	Multicopper oxidase
RY45_18430	PF07732	Multicopper oxidase
RY45_18435	PF01177	Asp/Glu/Hydantoin racemase
RY45_18440	PF01810	RY45_18440
RY45_18445	PF01810	RY45_18445
RY45_18450	PF00155	Aminotransferase class I and II
RY45_18450	PF00392	Bacterial regulatory proteins, gntR family
RY45_18465	PF11340	RY45_18465
RY45_18475	PF00209	Sodium:neurotransmitter symporter family
RY45_18480	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_18485	PF00209	Sodium:neurotransmitter symporter family
RY45_18490	PF03171	2OG-Fe(II) oxygenase superfamily
RY45_18490	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
RY45_18495	PF10973	RY45_18495
RY45_18500	PF08282	haloacid dehalogenase-like hydrolase
RY45_18505	PF07690	Major Facilitator Superfamily
RY45_18510	PF08279	HTH domain
RY45_18515	PF01037	AsnC family
RY45_18515	PF13412	Winged helix-turn-helix DNA-binding
RY45_18530	PF01047	MarR family
RY45_18535	PF02566	OsmC-like protein
RY45_18540	PF00107	Zinc-binding dehydrogenase
RY45_18540	PF16884	RY45_18540
RY45_18545	PF00293	NUDIX domain
RY45_18555	PF01641	SelR domain
RY45_18560	PF00128	Alpha amylase, catalytic domain
RY45_18560	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
RY45_18565	PF00128	Alpha amylase, catalytic domain
RY45_18565	PF02806	Alpha amylase, C-terminal all-beta domain
RY45_18565	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
RY45_18570	PF02446	4-alpha-glucanotransferase
RY45_18575	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
RY45_18575	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
RY45_18580	PF01263	Aldose 1-epimerase
RY45_18585	PF02445	Quinolinate synthetase A protein
RY45_18590	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_18590	PF02743	Cache domain
RY45_18625	PF13174	Tetratricopeptide repeat
RY45_18625	PF13432	Tetratricopeptide repeat
RY45_18625	PF16331	RY45_18625
RY45_18630	PF00691	OmpA family
RY45_18635	PF04052	TolB amino-terminal domain
RY45_18635	PF07676	WD40-like Beta Propeller Repeat
RY45_18640	PF06519	TolA C-terminal
RY45_18645	PF02472	Biopolymer transport protein ExbD/TolR
RY45_18650	PF01618	RY45_18650
RY45_18655	PF03061	Thioesterase superfamily
RY45_18660	PF09600	RY45_18660
RY45_18665	PF08173	RY45_18665
RY45_18670	PF02322	RY45_18670
RY45_18675	PF01654	RY45_18675
RY45_18680	PF05491	Holliday junction DNA helicase ruvB C-terminus
RY45_18680	PF05496	Holliday junction DNA helicase ruvB N-terminus
RY45_18685	PF01330	RuvA N terminal domain
RY45_18685	PF07499	RuvA, C-terminal domain
RY45_18685	PF14520	Helix-hairpin-helix domain
RY45_18690	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_18690	PF00672	HAMP domain
RY45_18695	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
RY45_18695	PF03129	Anticodon binding domain
RY45_18695	PF04073	Aminoacyl-tRNA editing domain
RY45_18700	PF00106	short chain dehydrogenase
RY45_18710	PF04314	Protein of unknown function (DUF461)
RY45_18715	PF00378	Enoyl-CoA hydratase/isomerase family
RY45_18720	PF10952	RY45_18720
RY45_18725	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_18730	PF08857	Putative ParB-like nuclease
RY45_18735	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
RY45_18745	PF14467	Domain of unknown function (DUF4426)
RY45_18750	PF02594	Uncharacterised ACR, YggU family COG1872
RY45_18755	PF02325	RY45_18755
RY45_18760	PF03807	NADP oxidoreductase coenzyme F420-dependent
RY45_18760	PF14748	Pyrroline-5-carboxylate reductase dimerisation
RY45_18765	PF01168	Alanine racemase, N-terminal domain
RY45_18770	PF00437	Type II/IV secretion system protein
RY45_18775	PF00437	Type II/IV secretion system protein
RY45_18780	PF03883	RY45_18780
RY45_18785	PF00270	DEAD/DEAH box helicase
RY45_18785	PF00271	Helicase conserved C-terminal domain
RY45_18790	PF05175	Methyltransferase small domain
RY45_18795	PF05525	RY45_18795
RY45_18800	PF05525	RY45_18800
RY45_18810	PF13690	Chemotaxis phosphatase CheX
RY45_18820	PF01207	Dihydrouridine synthase (Dus)
RY45_18830	PF00216	Bacterial DNA-binding protein
RY45_18835	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
RY45_18840	PF07238	PilZ domain
RY45_18845	PF13481	AAA domain
RY45_18845	PF13541	Subunit ChlI of Mg-chelatase
RY45_18850	PF07238	PilZ domain
RY45_18855	PF00561	alpha/beta hydrolase fold
RY45_18860	PF12710	haloacid dehalogenase-like hydrolase
RY45_18865	PF10144	RY45_18865
RY45_18870	PF00989	PAS fold
RY45_18870	PF00990	GGDEF domain
RY45_18870	PF01590	GAF domain
RY45_18870	PF08447	PAS fold
RY45_18870	PF08448	PAS fold
RY45_18875	PF01048	Phosphorylase superfamily
RY45_18880	PF01676	Metalloenzyme superfamily
RY45_18885	PF00591	Glycosyl transferase family, a/b domain
RY45_18885	PF02885	Glycosyl transferase family, helical bundle domain
RY45_18885	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
RY45_18890	PF01791	DeoC/LacD family aldolase
RY45_18900	PF01773	Na+ dependent nucleoside transporter N-terminus
RY45_18900	PF07662	Na+ dependent nucleoside transporter C-terminus
RY45_18900	PF07670	Nucleoside recognition
RY45_18905	PF01026	TatD related DNase
RY45_18910	PF07963	Prokaryotic N-terminal methylation motif
RY45_18915	PF01938	TRAM domain
RY45_18915	PF05958	tRNA (Uracil-5-)-methyltransferase
RY45_18920	PF00909	Ammonium Transporter Family
RY45_18925	PF00589	Phage integrase family
RY45_18940	PF00717	Peptidase S24-like
RY45_18940	PF01381	Helix-turn-helix
RY45_18945	PF14549	DNA-binding transcriptional regulator Cro
RY45_18955	PF06892	RY45_18955
RY45_18970	PF01381	Helix-turn-helix
RY45_19005	PF04860	Phage portal protein
RY45_19015	PF05929	RY45_19015
RY45_19020	PF05125	RY45_19020
RY45_19025	PF05944	RY45_19025
RY45_19030	PF05926	RY45_19030
RY45_19035	PF06891	RY45_19035
RY45_19040	PF10758	RY45_19040
RY45_19045	PF10772	RY45_19045
RY45_19050	PF01258	Prokaryotic dksA/traR C4-type zinc finger
RY45_19055	PF05106	RY45_19055
RY45_19060	PF05257	CHAP domain
RY45_19075	PF10963	RY45_19075
RY45_19080	PF10145	RY45_19080
RY45_19085	PF10761	RY45_19085
RY45_19090	PF04865	RY45_19090
RY45_19095	PF09684	RY45_19095
RY45_19100	PF12571	RY45_19100
RY45_19105	PF02413	RY45_19105
RY45_19130	PF02661	Fic/DOC family
RY45_19140	PF06271	RY45_19140
RY45_19145	PF03739	RY45_19145
RY45_19150	PF03739	RY45_19150
RY45_19155	PF00883	Cytosol aminopeptidase family, catalytic domain
RY45_19155	PF02789	Cytosol aminopeptidase family, N-terminal domain
RY45_19160	PF04364	DNA polymerase III chi subunit, HolC
RY45_19165	PF00133	tRNA synthetases class I (I, L, M and V)
RY45_19165	PF08264	Anticodon-binding domain of tRNA
RY45_19165	PF10458	Valyl tRNA synthetase tRNA binding arm
RY45_19170	PF00571	CBS domain
RY45_19170	PF01595	RY45_19170
RY45_19170	PF03471	Transporter associated domain
RY45_19175	PF09335	RY45_19175
RY45_19180	PF00768	D-alanyl-D-alanine carboxypeptidase
RY45_19215	PF02599	Global regulator protein family
RY45_19220	PF00696	Amino acid kinase family
RY45_19220	PF01842	ACT domain
RY45_19220	PF13840	ACT domain
RY45_19225	PF01411	tRNA synthetases class II (A)
RY45_19225	PF02272	DHHA1 domain
RY45_19225	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
RY45_19230	PF02631	RecX family
RY45_19235	PF00154	recA bacterial DNA recombination protein
RY45_19240	PF02464	Competence-damaged protein
RY45_19245	PF00488	MutS domain V
RY45_19245	PF01624	MutS domain I
RY45_19245	PF05188	MutS domain II
RY45_19245	PF05190	MutS family domain IV
RY45_19245	PF05192	MutS domain III
RY45_19250	PF02028	BCCT family transporter
RY45_19260	PF01047	MarR family
RY45_19265	PF12762	RY45_19265
RY45_19270	PF04222	Protein of unknown function (DUF416)
RY45_19275	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
RY45_19280	PF01551	Peptidase family M23
RY45_19280	PF04225	Opacity-associated protein A LysM-like domain
RY45_19285	PF16448	RY45_19285
RY45_19290	PF16868	RY45_19290
RY45_19295	PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP
RY45_19300	PF01297	Periplasmic solute binding protein family
RY45_19305	PF00005	ABC transporter
RY45_19310	PF00950	RY45_19310
RY45_19315	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_19315	PF03466	LysR substrate binding domain
RY45_19320	PF00892	EamA-like transporter family
RY45_19325	PF03167	Uracil DNA glycosylase superfamily
RY45_19330	PF00892	EamA-like transporter family
RY45_19340	PF01541	GIY-YIG catalytic domain
RY45_19345	PF09583	RY45_19345
RY45_19350	PF04024	RY45_19350
RY45_19355	PF04012	RY45_19355
RY45_19360	PF01553	Acyltransferase
RY45_19370	PF02683	RY45_19370
RY45_19370	PF11412	Disulphide bond corrector protein DsbC
RY45_19370	PF13899	Thioredoxin-like
RY45_19375	PF13462	Thioredoxin
RY45_19380	PF08534	Redoxin
RY45_19385	PF00226	DnaJ domain
RY45_19415	PF07690	Major Facilitator Superfamily
RY45_19420	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_19420	PF03466	LysR substrate binding domain
RY45_19425	PF00521	DNA gyrase/topoisomerase IV, subunit A
RY45_19425	PF03989	DNA gyrase C-terminal domain, beta-propeller
RY45_19430	PF00204	DNA gyrase B
RY45_19430	PF00986	DNA gyrase B subunit, carboxyl terminus
RY45_19430	PF01751	Toprim domain
RY45_19430	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_19435	PF04632	RY45_19435
RY45_19440	PF13437	HlyD family secretion protein
RY45_19440	PF13533	Biotin-lipoyl like
RY45_19445	PF07869	RY45_19445
RY45_19450	PF04828	Glutathione-dependent formaldehyde-activating enzyme
RY45_19455	PF00293	NUDIX domain
RY45_19455	PF12535	Hydrolase of X-linked nucleoside diphosphate N terminal
RY45_19460	PF05728	Uncharacterised protein family (UPF0227)
RY45_19465	PF00149	Calcineurin-like phosphoesterase
RY45_19470	PF06853	RY45_19470
RY45_19475	PF00293	NUDIX domain
RY45_19480	PF02321	Outer membrane efflux protein
RY45_19485	PF00294	pfkB family carbohydrate kinase
RY45_19485	PF01467	Cytidylyltransferase
RY45_19490	PF03279	RY45_19490
RY45_19495	PF03544	Gram-negative bacterial TonB protein C-terminal
RY45_19500	PF01928	CYTH domain
RY45_19505	PF01865	Protein of unknown function DUF47
RY45_19510	PF01384	RY45_19510
RY45_19515	PF04073	Aminoacyl-tRNA editing domain
RY45_19520	PF07350	Protein of unknown function (DUF1479)
RY45_19525	PF13302	Acetyltransferase (GNAT) domain
RY45_19530	PF00581	Rhodanese-like domain
RY45_19535	PF02566	OsmC-like protein
RY45_19540	PF00155	Aminotransferase class I and II
RY45_19540	PF00392	Bacterial regulatory proteins, gntR family
RY45_19545	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_19545	PF03466	LysR substrate binding domain
RY45_19550	PF03788	RY45_19550
RY45_19555	PF04172	RY45_19555
RY45_19570	PF01743	Poly A polymerase head domain
RY45_19570	PF01966	HD domain
RY45_19570	PF12627	Probable RNA and SrmB- binding site of polymerase A
RY45_19575	PF01471	Putative peptidoglycan binding domain
RY45_19575	PF13401	AAA domain
RY45_19580	PF16537	RY45_19580
RY45_19585	PF00633	Helix-hairpin-helix motif
RY45_19585	PF00730	HhH-GPD superfamily base excision DNA repair protein
RY45_19585	PF10576	Iron-sulfur binding domain of endonuclease III
RY45_19585	PF14815	NUDIX domain
RY45_19590	PF04362	Bacterial Fe(2+) trafficking
RY45_19595	PF01464	Transglycosylase SLT domain
RY45_19595	PF11873	Domain of unknown function (DUF3393)
RY45_19600	PF04076	Bacterial OB fold (BOF) protein
RY45_19605	PF00657	GDSL-like Lipase/Acylhydrolase
RY45_19610	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_19615	PF00691	OmpA family
RY45_19615	PF01389	OmpA-like transmembrane domain
RY45_19620	PF03886	Protein of unknown function (DUF330)
RY45_19625	PF02470	RY45_19625
RY45_19630	PF04403	RY45_19630
RY45_19635	PF17209	RY45_19635
RY45_19640	PF13419	Haloacid dehalogenase-like hydrolase
RY45_19645	PF08668	HDOD domain
RY45_19650	PF00990	GGDEF domain
RY45_19655	PF00701	Dihydrodipicolinate synthetase family
RY45_19660	PF05175	Methyltransferase small domain
RY45_19660	PF08468	Methyltransferase small domain N-terminal
RY45_19665	PF00483	Nucleotidyl transferase
RY45_19670	PF00534	Glycosyl transferases group 1
RY45_19670	PF08323	Starch synthase catalytic domain
RY45_19700	PF10719	RY45_19700
RY45_19710	PF03553	RY45_19710
RY45_19715	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_19715	PF03466	LysR substrate binding domain
RY45_19720	PF13416	Bacterial extracellular solute-binding protein
RY45_19725	PF00005	ABC transporter
RY45_19725	PF08402	TOBE domain
RY45_19730	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_19735	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_19740	PF00171	Aldehyde dehydrogenase family
RY45_19750	PF00892	EamA-like transporter family
RY45_19755	PF01037	AsnC family
RY45_19755	PF13404	AsnC-type helix-turn-helix domain
RY45_19760	PF12464	Maltose acetyltransferase
RY45_19760	PF14602	Hexapeptide repeat of succinyl-transferase
RY45_19765	PF00128	Alpha amylase, catalytic domain
RY45_19765	PF16657	RY45_19765
RY45_19770	PF00367	phosphotransferase system, EIIB
RY45_19770	PF02378	Phosphotransferase system, EIIC
RY45_19775	PF00356	Bacterial regulatory proteins, lacI family
RY45_19775	PF13377	Periplasmic binding protein-like domain
RY45_19780	PF03547	RY45_19780
RY45_19785	PF00403	Heavy-metal-associated domain
RY45_19790	PF00710	Asparaginase
RY45_19795	PF01699	Sodium/calcium exchanger protein
RY45_19800	PF14163	RY45_19800
RY45_19805	PF02142	MGS-like domain
RY45_19810	PF05960	Bacterial protein of unknown function (DUF885)
RY45_19815	PF00210	Ferritin-like domain
RY45_19820	PF04324	BFD-like [2Fe-2S] binding domain
RY45_19825	PF10115	RY45_19825
RY45_19830	PF05127	Helicase
RY45_19830	PF08351	Domain of unknown function (DUF1726)
RY45_19830	PF13718	GNAT acetyltransferase 2
RY45_19830	PF17176	RY45_19830
RY45_19835	PF00106	short chain dehydrogenase
RY45_19840	PF00072	Response regulator receiver domain
RY45_19840	PF01584	CheW-like domain
RY45_19850	PF08020	Protein of unknown function (DUF1706)
RY45_19860	PF07885	Ion channel
RY45_19870	PF05488	PAAR motif
RY45_19890	PF05954	Phage late control gene D protein (GPD)
RY45_19895	PF05638	Protein of unknown function (DUF796)
RY45_19920	PF02660	RY45_19920
RY45_19925	PF02152	Dihydroneopterin aldolase
RY45_19930	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
RY45_19935	PF04073	Aminoacyl-tRNA editing domain
RY45_19940	PF07690	Major Facilitator Superfamily
RY45_19945	PF02492	CobW/HypB/UreG, nucleotide-binding domain
RY45_19945	PF07683	Cobalamin synthesis protein cobW C-terminal domain
RY45_19950	PF01565	FAD binding domain
RY45_19950	PF04030	D-arabinono-1,4-lactone oxidase
RY45_19955	PF01810	RY45_19955
RY45_19960	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_19960	PF03466	LysR substrate binding domain
RY45_19965	PF00563	EAL domain
RY45_19965	PF12792	RY45_19965
RY45_19970	PF00330	Aconitase family (aconitate hydratase)
RY45_19970	PF06434	Aconitate hydratase 2 N-terminus
RY45_19970	PF11791	Aconitate B N-terminal domain
RY45_19975	PF01734	Patatin-like phospholipase
RY45_19995	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
RY45_19995	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_20000	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
RY45_20000	PF00364	Biotin-requiring enzyme
RY45_20000	PF02817	e3 binding domain
RY45_20005	PF00456	Transketolase, thiamine diphosphate binding domain
RY45_20010	PF00392	Bacterial regulatory proteins, gntR family
RY45_20010	PF07729	FCD domain
RY45_20020	PF13975	RY45_20020
RY45_20025	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
RY45_20025	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
RY45_20030	PF00114	Pilin (bacterial filament)
RY45_20030	PF07963	Prokaryotic N-terminal methylation motif
RY45_20035	PF00437	Type II/IV secretion system protein
RY45_20035	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
RY45_20040	PF00482	Type II secretion system (T2SS), protein F
RY45_20045	PF01478	Type IV leader peptidase family
RY45_20045	PF06750	RY45_20045
RY45_20050	PF01121	Dephospho-CoA kinase
RY45_20055	PF07072	Protein of unknown function (DUF1342)
RY45_20060	PF03884	Domain of unknown function (DUF329)
RY45_20065	PF00293	NUDIX domain
RY45_20070	PF14559	Tetratricopeptide repeat
RY45_20075	PF01043	SecA preprotein cross-linking domain
RY45_20075	PF02810	SEC-C motif
RY45_20075	PF07516	SecA Wing and Scaffold domain
RY45_20075	PF07517	SecA DEAD-like domain
RY45_20080	PF01551	Peptidase family M23
RY45_20085	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
RY45_20090	PF00091	Tubulin/FtsZ family, GTPase domain
RY45_20090	PF12327	FtsZ family, C-terminal domain
RY45_20095	PF02491	SHS2 domain inserted in FTSA
RY45_20095	PF14450	Cell division protein FtsA
RY45_20100	PF03799	Cell division protein FtsQ
RY45_20100	PF08478	POTRA domain, FtsQ-type
RY45_20105	PF01225	Mur ligase family, catalytic domain
RY45_20105	PF02875	Mur ligase family, glutamate ligase domain
RY45_20105	PF08245	Mur ligase middle domain
RY45_20110	PF03033	Glycosyltransferase family 28 N-terminal domain
RY45_20110	PF04101	Glycosyltransferase family 28 C-terminal domain
RY45_20115	PF01098	RY45_20115
RY45_20120	PF02875	Mur ligase family, glutamate ligase domain
RY45_20120	PF08245	Mur ligase middle domain
RY45_20125	PF00953	Glycosyl transferase family 4
RY45_20125	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
RY45_20130	PF01225	Mur ligase family, catalytic domain
RY45_20130	PF02875	Mur ligase family, glutamate ligase domain
RY45_20130	PF08245	Mur ligase middle domain
RY45_20135	PF01225	Mur ligase family, catalytic domain
RY45_20135	PF02875	Mur ligase family, glutamate ligase domain
RY45_20135	PF08245	Mur ligase middle domain
RY45_20140	PF00905	Penicillin binding protein transpeptidase domain
RY45_20140	PF03717	Penicillin-binding Protein dimerisation domain
RY45_20145	PF04999	RY45_20145
RY45_20150	PF01795	MraW methylase family
RY45_20155	PF02381	MraZ protein
RY45_20165	PF01464	Transglycosylase SLT domain
RY45_20170	PF00691	OmpA family
RY45_20170	PF13677	RY45_20170
RY45_20175	PF01618	RY45_20175
RY45_20180	PF04539	Sigma-70 region 3
RY45_20180	PF04542	Sigma-70 region 2
RY45_20180	PF04545	Sigma-70, region 4
RY45_20185	PF03748	RY45_20185
RY45_20190	PF02120	Flagellar hook-length control protein FliK
RY45_20200	PF02561	Flagellar protein FliS
RY45_20205	PF02465	RY45_20205
RY45_20205	PF07195	RY45_20205
RY45_20205	PF07196	Flagellin hook IN motif
RY45_20210	PF00669	Bacterial flagellin N-terminal helical region
RY45_20210	PF00700	Bacterial flagellin C-terminal helical region
RY45_20220	PF01973	RY45_20220
RY45_20230	PF00669	Bacterial flagellin N-terminal helical region
RY45_20235	PF00460	Flagella basal body rod protein
RY45_20235	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_20240	PF10135	RY45_20240
RY45_20245	PF02119	RY45_20245
RY45_20250	PF02107	RY45_20250
RY45_20255	PF00460	Flagella basal body rod protein
RY45_20255	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_20260	PF00460	Flagella basal body rod protein
RY45_20260	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_20265	PF00460	Flagella basal body rod protein
RY45_20265	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_20265	PF07559	Flagellar basal body protein FlaE
RY45_20270	PF03963	RY45_20270
RY45_20270	PF13860	FlgD Ig-like domain
RY45_20270	PF13861	FlgD Tudor-like domain
RY45_20275	PF00460	Flagella basal body rod protein
RY45_20275	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
RY45_20285	PF13144	SAF-like
RY45_20290	PF04316	Anti-sigma-28 factor, FlgM
RY45_20295	PF05130	FlgN protein
RY45_20300	PF02050	Flagellar FliJ protein
RY45_20305	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
RY45_20310	PF02108	RY45_20310
RY45_20315	PF01706	FliG C-terminal domain
RY45_20315	PF14841	FliG middle domain
RY45_20315	PF14842	FliG N-terminal domain
RY45_20320	PF01514	Secretory protein of YscJ/FliF family
RY45_20320	PF08345	RY45_20320
RY45_20325	PF02049	RY45_20325
RY45_20330	PF00072	Response regulator receiver domain
RY45_20330	PF00158	Sigma-54 interaction domain
RY45_20330	PF02954	Bacterial regulatory protein, Fis family
RY45_20335	PF00771	FHIPEP family
RY45_20340	PF01312	FlhB HrpN YscU SpaS Family
RY45_20345	PF01311	RY45_20345
RY45_20350	PF01313	RY45_20350
RY45_20355	PF00813	RY45_20355
RY45_20360	PF01052	Surface presentation of antigens (SPOA)
RY45_20365	PF01052	Surface presentation of antigens (SPOA)
RY45_20370	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
RY45_20375	PF04348	LppC putative lipoprotein
RY45_20380	PF02021	Uncharacterised protein family UPF0102
RY45_20385	PF13580	SIS domain
RY45_20390	PF04972	BON domain
RY45_20395	PF04386	Stringent starvation protein B
RY45_20400	PF00043	Glutathione S-transferase, C-terminal domain
RY45_20400	PF13417	Glutathione S-transferase, N-terminal domain
RY45_20405	PF02167	Cytochrome C1 family
RY45_20410	PF00032	Cytochrome b(C-terminal)/b6/petD
RY45_20410	PF00033	Cytochrome b(N-terminal)/b6/petB
RY45_20415	PF00355	Rieske [2Fe-2S] domain
RY45_20415	PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
RY45_20420	PF00380	Ribosomal protein S9/S16
RY45_20425	PF00572	Ribosomal protein L13
RY45_20430	PF03969	AFG1-like ATPase
RY45_20435	PF06295	RY45_20435
RY45_20440	PF00595	PDZ domain (Also known as DHR or GLGF)
RY45_20440	PF13180	PDZ domain
RY45_20440	PF13365	Trypsin-like peptidase domain
RY45_20445	PF13180	PDZ domain
RY45_20445	PF13365	Trypsin-like peptidase domain
RY45_20455	PF14272	RY45_20455
RY45_20460	PF14189	RY45_20460
RY45_20465	PF14188	RY45_20465
RY45_20470	PF14187	RY45_20470
RY45_20475	PF01979	Amidohydrolase family
RY45_20480	PF03841	L-seryl-tRNA selenium transferase
RY45_20485	PF07071	Protein of unknown function (DUF1341)
RY45_20490	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
RY45_20490	PF00874	PRD domain
RY45_20490	PF05043	Mga helix-turn-helix domain
RY45_20490	PF08279	HTH domain
RY45_20495	PF00381	PTS HPr component phosphorylation site
RY45_20500	PF03668	RY45_20500
RY45_20505	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
RY45_20510	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
RY45_20515	PF00309	RY45_20515
RY45_20515	PF04552	Sigma-54, DNA binding domain
RY45_20515	PF04963	Sigma-54 factor, core binding domain
RY45_20520	PF00005	ABC transporter
RY45_20520	PF12399	Branched-chain amino acid ATP-binding cassette transporter
RY45_20525	PF03968	OstA-like protein
RY45_20530	PF06835	Lipopolysaccharide-assembly, LptC-related
RY45_20535	PF08282	haloacid dehalogenase-like hydrolase
RY45_20540	PF00571	CBS domain
RY45_20540	PF01380	SIS domain
RY45_20545	PF00005	ABC transporter
RY45_20550	PF02405	RY45_20550
RY45_20555	PF02470	RY45_20555
RY45_20560	PF05494	Toluene tolerance, Ttg2
RY45_20565	PF13466	STAS domain
RY45_20570	PF01722	BolA-like protein
RY45_20575	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
RY45_20580	PF01523	Putative modulator of DNA gyrase
RY45_20585	PF04751	Protein of unknown function (DUF615)
RY45_20590	PF00912	Transglycosylase
RY45_20595	PF04363	RY45_20595
RY45_20620	PF05940	RY45_20620
RY45_20625	PF01381	Helix-turn-helix
RY45_20625	PF07883	Cupin domain
RY45_20630	PF03594	RY45_20630
RY45_20635	PF11301	RY45_20635
RY45_20640	PF02219	Methylenetetrahydrofolate reductase
RY45_20645	PF13673	Acetyltransferase (GNAT) domain
RY45_20650	PF01547	Bacterial extracellular solute-binding protein
RY45_20655	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_20655	PF12729	RY45_20655
RY45_20660	PF03922	OmpW family
RY45_20665	PF00990	GGDEF domain
RY45_20665	PF05228	RY45_20665
RY45_20670	PF00005	ABC transporter
RY45_20675	PF00196	Bacterial regulatory proteins, luxR family
RY45_20680	PF00436	Single-strand binding protein family
RY45_20685	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_20690	PF01545	Cation efflux family
RY45_20690	PF16916	RY45_20690
RY45_20695	PF11656	RY45_20695
RY45_20700	PF00313	'Cold-shock' DNA-binding domain
RY45_20710	PF00593	TonB dependent receptor
RY45_20710	PF07715	TonB-dependent Receptor Plug Domain
RY45_20715	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_20715	PF00990	GGDEF domain
RY45_20720	PF00512	His Kinase A (phospho-acceptor) domain
RY45_20720	PF00672	HAMP domain
RY45_20720	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_20725	PF00072	Response regulator receiver domain
RY45_20725	PF00486	Transcriptional regulatory protein, C terminal
RY45_20750	PF00990	GGDEF domain
RY45_20750	PF08447	PAS fold
RY45_20755	PF02311	AraC-like ligand binding domain
RY45_20755	PF12833	Helix-turn-helix domain
RY45_20760	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_20770	PF13538	UvrD-like helicase C-terminal domain
RY45_20770	PF13604	AAA domain
RY45_20775	PF00580	UvrD/REP helicase N-terminal domain
RY45_20775	PF12705	PD-(D/E)XK nuclease superfamily
RY45_20775	PF13361	UvrD-like helicase C-terminal domain
RY45_20780	PF04257	Exodeoxyribonuclease V, gamma subunit
RY45_20785	PF07681	RY45_20785
RY45_20790	PF02678	Pirin
RY45_20800	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_20800	PF03466	LysR substrate binding domain
RY45_20805	PF13443	Cro/C1-type HTH DNA-binding domain
RY45_20810	PF00392	Bacterial regulatory proteins, gntR family
RY45_20810	PF07702	UTRA domain
RY45_20815	PF13343	Bacterial extracellular solute-binding protein
RY45_20820	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
RY45_20825	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_20830	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_20835	PF00005	ABC transporter
RY45_20835	PF08402	TOBE domain
RY45_20840	PF12710	haloacid dehalogenase-like hydrolase
RY45_20845	PF00990	GGDEF domain
RY45_20845	PF02743	Cache domain
RY45_20850	PF09980	RY45_20850
RY45_20855	PF00892	EamA-like transporter family
RY45_20860	PF06445	GyrI-like small molecule binding domain
RY45_20860	PF12833	Helix-turn-helix domain
RY45_20865	PF00583	Acetyltransferase (GNAT) family
RY45_20870	PF00199	Catalase
RY45_20870	PF06628	Catalase-related immune-responsive
RY45_20875	PF07383	RY45_20875
RY45_20885	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_20895	PF00293	NUDIX domain
RY45_20895	PF01569	PAP2 superfamily
RY45_20900	PF01594	RY45_20900
RY45_20915	PF04371	Porphyromonas-type peptidyl-arginine deiminase
RY45_20920	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_20920	PF03466	LysR substrate binding domain
RY45_20925	PF00158	Sigma-54 interaction domain
RY45_20925	PF00989	PAS fold
RY45_20925	PF02954	Bacterial regulatory protein, Fis family
RY45_20930	PF00465	Iron-containing alcohol dehydrogenase
RY45_20935	PF00381	PTS HPr component phosphorylation site
RY45_20935	PF03610	PTS system fructose IIA component
RY45_20940	PF02734	DAK2 domain
RY45_20945	PF02733	Dak1 domain
RY45_20950	PF12762	RY45_20950
RY45_20955	PF00860	Permease family
RY45_20960	PF07883	Cupin domain
RY45_20990	PF13242	HAD-hyrolase-like
RY45_20995	PF00009	Elongation factor Tu GTP binding domain
RY45_20995	PF03143	Elongation factor Tu C-terminal domain
RY45_20995	PF03144	Elongation factor Tu domain 2
RY45_21005	PF00177	Ribosomal protein S7p/S5e
RY45_21015	PF04077	DsrH like protein
RY45_21020	PF02635	DsrE/DsrF-like family
RY45_21025	PF02635	DsrE/DsrF-like family
RY45_21030	PF01042	Endoribonuclease L-PSP
RY45_21035	PF08348	RY45_21035
RY45_21035	PF13309	RY45_21035
RY45_21040	PF00623	RNA polymerase Rpb1, domain 2
RY45_21040	PF04983	RNA polymerase Rpb1, domain 3
RY45_21040	PF04997	RNA polymerase Rpb1, domain 1
RY45_21040	PF04998	RNA polymerase Rpb1, domain 5
RY45_21040	PF05000	RNA polymerase Rpb1, domain 4
RY45_21045	PF00562	RNA polymerase Rpb2, domain 6
RY45_21045	PF04560	RNA polymerase Rpb2, domain 7
RY45_21045	PF04561	RNA polymerase Rpb2, domain 2
RY45_21045	PF04563	RNA polymerase beta subunit
RY45_21045	PF04565	RNA polymerase Rpb2, domain 3
RY45_21045	PF10385	RNA polymerase beta subunit external 1 domain
RY45_21050	PF00542	Ribosomal protein L7/L12 C-terminal domain
RY45_21050	PF16320	RY45_21050
RY45_21055	PF00466	Ribosomal protein L10
RY45_21060	PF00687	Ribosomal protein L1p/L10e family
RY45_21065	PF00298	Ribosomal protein L11, RNA binding domain
RY45_21065	PF03946	Ribosomal protein L11, N-terminal domain
RY45_21070	PF00467	KOW motif
RY45_21070	PF02357	Transcription termination factor nusG
RY45_21075	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
RY45_21085	PF00009	Elongation factor Tu GTP binding domain
RY45_21085	PF03143	Elongation factor Tu C-terminal domain
RY45_21085	PF03144	Elongation factor Tu domain 2
RY45_21100	PF00485	Phosphoribulokinase / Uridine kinase family
RY45_21105	PF02237	Biotin protein ligase C terminal domain
RY45_21105	PF03099	Biotin/lipoate A/B protein ligase family
RY45_21105	PF08279	HTH domain
RY45_21110	PF01565	FAD binding domain
RY45_21110	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
RY45_21115	PF02254	TrkA-N domain
RY45_21120	PF02386	Cation transport protein
RY45_21125	PF01131	DNA topoisomerase
RY45_21125	PF01751	Toprim domain
RY45_21130	PF03264	NapC/NirT cytochrome c family, N-terminal region
RY45_21135	PF00384	Molybdopterin oxidoreductase
RY45_21135	PF01568	Molydopterin dinucleotide binding domain
RY45_21135	PF10518	TAT (twin-arginine translocation) pathway signal sequence
RY45_21145	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_21150	PF00072	Response regulator receiver domain
RY45_21150	PF00486	Transcriptional regulatory protein, C terminal
RY45_21160	PF13670	RY45_21160
RY45_21165	PF01794	RY45_21165
RY45_21170	PF00174	Oxidoreductase molybdopterin binding domain
RY45_21175	PF06496	RY45_21175
RY45_21180	PF00072	Response regulator receiver domain
RY45_21180	PF00158	Sigma-54 interaction domain
RY45_21190	PF00512	His Kinase A (phospho-acceptor) domain
RY45_21190	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_21195	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
RY45_21200	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_21205	PF00571	CBS domain
RY45_21210	PF10063	RY45_21210
RY45_21215	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_21220	PF01037	AsnC family
RY45_21220	PF13412	Winged helix-turn-helix DNA-binding
RY45_21225	PF03590	Aspartate-ammonia ligase
RY45_21230	PF00753	Metallo-beta-lactamase superfamily
RY45_21235	PF00004	ATPase family associated with various cellular activities (AAA)
RY45_21235	PF02861	Clp amino terminal domain
RY45_21235	PF07724	AAA domain (Cdc48 subfamily)
RY45_21235	PF10431	C-terminal, D2-small domain, of ClpB protein
RY45_21240	PF02578	Multi-copper polyphenol oxidoreductase laccase
RY45_21245	PF00849	RNA pseudouridylate synthase
RY45_21245	PF01479	S4 domain
RY45_21250	PF13525	Outer membrane lipoprotein
RY45_21255	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
RY45_21255	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_21260	PF00375	Sodium:dicarboxylate symporter family
RY45_21265	PF03313	RY45_21265
RY45_21270	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_21275	PF02233	NAD(P) transhydrogenase beta subunit
RY45_21280	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
RY45_21280	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
RY45_21280	PF12769	Domain of unknown function (DUF3814)
RY45_21285	PF00465	Iron-containing alcohol dehydrogenase
RY45_21290	PF06719	RY45_21290
RY45_21290	PF12833	Helix-turn-helix domain
RY45_21295	PF08212	Lipocalin-like domain
RY45_21300	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_21300	PF00672	HAMP domain
RY45_21300	PF02743	Cache domain
RY45_21305	PF02666	RY45_21305
RY45_21305	PF12588	RY45_21305
RY45_21320	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
RY45_21320	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
RY45_21325	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
RY45_21325	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
RY45_21330	PF01316	Arginine repressor, DNA binding domain
RY45_21330	PF02863	Arginine repressor, C-terminal domain
RY45_21335	PF03606	RY45_21335
RY45_21340	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
RY45_21340	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
RY45_21345	PF00696	Amino acid kinase family
RY45_21350	PF02274	Amidinotransferase
RY45_21355	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
RY45_21365	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_21370	PF02653	RY45_21370
RY45_21375	PF00005	ABC transporter
RY45_21380	PF13407	Periplasmic binding protein domain
RY45_21385	PF00703	Glycosyl hydrolases family 2
RY45_21385	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
RY45_21385	PF02837	Glycosyl hydrolases family 2, sugar binding domain
RY45_21385	PF02929	Beta galactosidase small chain
RY45_21385	PF16353	RY45_21385
RY45_21390	PF00356	Bacterial regulatory proteins, lacI family
RY45_21390	PF13377	Periplasmic binding protein-like domain
RY45_21395	PF16363	RY45_21395
RY45_21400	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
RY45_21400	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
RY45_21405	PF00288	GHMP kinases N terminal domain
RY45_21405	PF08544	GHMP kinases C terminal
RY45_21405	PF10509	Galactokinase galactose-binding signature
RY45_21410	PF01263	Aldose 1-epimerase
RY45_21415	PF00248	Aldo/keto reductase family
RY45_21420	PF02673	RY45_21420
RY45_21425	PF12973	ChrR Cupin-like domain
RY45_21430	PF04542	Sigma-70 region 2
RY45_21430	PF04545	Sigma-70, region 4
RY45_21435	PF02190	ATP-dependent protease La (LON) domain
RY45_21440	PF00750	tRNA synthetases class I (R)
RY45_21440	PF03485	Arginyl tRNA synthetase N terminal domain
RY45_21440	PF05746	DALR anticodon binding domain
RY45_21445	PF05036	Sporulation related domain
RY45_21450	PF00227	Proteasome subunit
RY45_21455	PF00004	ATPase family associated with various cellular activities (AAA)
RY45_21455	PF07724	AAA domain (Cdc48 subfamily)
RY45_21455	PF10431	C-terminal, D2-small domain, of ClpB protein
RY45_21460	PF07690	Major Facilitator Superfamily
RY45_21465	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
RY45_21465	PF03466	LysR substrate binding domain
RY45_21470	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
RY45_21470	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
RY45_21470	PF04324	BFD-like [2Fe-2S] binding domain
RY45_21470	PF07992	Pyridine nucleotide-disulphide oxidoreductase
RY45_21475	PF13806	Rieske-like [2Fe-2S] domain
RY45_21480	PF01226	Formate/nitrite transporter
RY45_21485	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
RY45_21485	PF10414	Sirohaem synthase dimerisation region
RY45_21485	PF13241	Putative NAD(P)-binding
RY45_21485	PF14824	Sirohaem biosynthesis protein central
RY45_21490	PF00571	CBS domain
RY45_21490	PF01769	Divalent cation transporter
RY45_21490	PF03448	MgtE intracellular N domain
RY45_21495	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
RY45_21500	PF03737	Demethylmenaquinone methyltransferase
RY45_21505	PF02592	RY45_21505
RY45_21510	PF12305	RY45_21510
RY45_21515	PF02696	RY45_21515
RY45_21520	PF00034	Cytochrome c
RY45_21525	PF00270	DEAD/DEAH box helicase
RY45_21525	PF00271	Helicase conserved C-terminal domain
RY45_21525	PF00570	HRDC domain
RY45_21525	PF09382	RQC domain
RY45_21525	PF16124	RY45_21525
RY45_21530	PF03061	Thioesterase superfamily
RY45_21545	PF03473	MOSC domain
RY45_21545	PF03475	3-alpha domain
RY45_21550	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_21555	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_21560	PF00005	ABC transporter
RY45_21560	PF08402	TOBE domain
RY45_21565	PF13416	Bacterial extracellular solute-binding protein
RY45_21570	PF13416	Bacterial extracellular solute-binding protein
RY45_21575	PF00202	Aminotransferase class-III
RY45_21580	PF00120	Glutamine synthetase, catalytic domain
RY45_21585	PF01258	Prokaryotic dksA/traR C4-type zinc finger
RY45_21595	PF06127	RY45_21595
RY45_21600	PF05981	RY45_21600
RY45_21605	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
RY45_21605	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
RY45_21610	PF00012	Hsp70 protein
RY45_21615	PF03724	META domain
RY45_21620	PF08668	HDOD domain
RY45_21625	PF00128	Alpha amylase, catalytic domain
RY45_21625	PF16657	RY45_21625
RY45_21630	PF02719	Polysaccharide biosynthesis protein
RY45_21635	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
RY45_21640	PF00391	PEP-utilising enzyme, mobile domain
RY45_21640	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
RY45_21655	PF00535	Glycosyl transferase family 2
RY45_21660	PF05893	Acyl-CoA reductase (LuxC)
RY45_21665	PF04443	RY45_21665
RY45_21670	PF00501	AMP-binding enzyme
RY45_21675	PF13561	Enoyl-(Acyl carrier protein) reductase
RY45_21685	PF13302	Acetyltransferase (GNAT) domain
RY45_21690	PF02348	Cytidylyltransferase
RY45_21695	PF04101	Glycosyltransferase family 28 C-terminal domain
RY45_21700	PF03102	NeuB family
RY45_21700	PF08666	SAF domain
RY45_21705	PF01973	RY45_21705
RY45_21720	PF09940	Domain of unknown function (DUF2172)
RY45_21720	PF16221	RY45_21720
RY45_21720	PF16254	RY45_21720
RY45_21725	PF13669	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
RY45_21730	PF02522	Aminoglycoside 3-N-acetyltransferase
RY45_21745	PF01923	Cobalamin adenosyltransferase
RY45_21755	PF05958	tRNA (Uracil-5-)-methyltransferase
RY45_21760	PF00072	Response regulator receiver domain
RY45_21760	PF00486	Transcriptional regulatory protein, C terminal
RY45_21765	PF00512	His Kinase A (phospho-acceptor) domain
RY45_21765	PF00672	HAMP domain
RY45_21765	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_21775	PF00390	Malic enzyme, N-terminal domain
RY45_21775	PF03949	Malic enzyme, NAD binding domain
RY45_21780	PF11066	RY45_21780
RY45_21780	PF13460	NADH(P)-binding
RY45_21785	PF01197	Ribosomal protein L31
RY45_21790	PF00270	DEAD/DEAH box helicase
RY45_21790	PF00271	Helicase conserved C-terminal domain
RY45_21800	PF00440	Bacterial regulatory proteins, tetR family
RY45_21805	PF04982	RY45_21805
RY45_21810	PF00691	OmpA family
RY45_21810	PF01389	OmpA-like transmembrane domain
RY45_21815	PF00291	Pyridoxal-phosphate dependent enzyme
RY45_21815	PF00585	C-terminal regulatory domain of Threonine dehydratase
RY45_21820	PF00920	Dehydratase family
RY45_21825	PF01063	Aminotransferase class IV
RY45_21830	PF13710	ACT domain
RY45_21835	PF00205	Thiamine pyrophosphate enzyme, central domain
RY45_21835	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
RY45_21835	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
RY45_21840	PF01078	Magnesium chelatase, subunit ChlI
RY45_21840	PF13335	RY45_21840
RY45_21840	PF13541	Subunit ChlI of Mg-chelatase
RY45_21845	PF01553	Acyltransferase
RY45_21850	PF01553	Acyltransferase
RY45_21855	PF04463	RY45_21855
RY45_21865	PF00857	Isochorismatase family
RY45_21870	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
RY45_21875	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
RY45_21880	PF00005	ABC transporter
RY45_21885	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_21890	PF01323	DSBA-like thioredoxin domain
RY45_21895	PF01636	Phosphotransferase enzyme family
RY45_21900	PF11614	IG-like fold at C-terminal of FixG, putative oxidoreductase
RY45_21900	PF12801	RY45_21900
RY45_21900	PF13746	4Fe-4S dicluster domain
RY45_21905	PF06288	Protein of unknown function (DUF1040)
RY45_21910	PF00990	GGDEF domain
RY45_21915	PF00376	MerR family regulatory protein
RY45_21915	PF09278	MerR, DNA binding
RY45_21920	PF00122	E1-E2 ATPase
RY45_21920	PF00403	Heavy-metal-associated domain
RY45_21920	PF00702	haloacid dehalogenase-like hydrolase
RY45_21925	PF00156	Phosphoribosyl transferase domain
RY45_21930	PF01138	3' exoribonuclease family, domain 1
RY45_21930	PF03725	3' exoribonuclease family, domain 2
RY45_21935	PF03755	RY45_21935
RY45_21935	PF08340	RY45_21935
RY45_21940	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
RY45_21945	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
RY45_21955	PF01755	RY45_21955
RY45_21960	PF04932	RY45_21960
RY45_21965	PF01522	Polysaccharide deacetylase
RY45_21965	PF13439	Glycosyltransferase Family 4
RY45_21965	PF13692	Glycosyl transferases group 1
RY45_21970	PF01370	NAD dependent epimerase/dehydratase family
RY45_21975	PF00440	Bacterial regulatory proteins, tetR family
RY45_21975	PF13972	Bacterial transcriptional repressor
RY45_21980	PF00155	Aminotransferase class I and II
RY45_21985	PF00107	Zinc-binding dehydrogenase
RY45_21985	PF08240	Alcohol dehydrogenase GroES-like domain
RY45_21990	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
RY45_21995	PF00563	EAL domain
RY45_21995	PF00990	GGDEF domain
RY45_22000	PF00580	UvrD/REP helicase N-terminal domain
RY45_22000	PF13361	UvrD-like helicase C-terminal domain
RY45_22005	PF00266	Aminotransferase class-V
RY45_22010	PF02657	Fe-S metabolism associated domain
RY45_22015	PF00899	ThiF family
RY45_22055	PF03544	Gram-negative bacterial TonB protein C-terminal
RY45_22060	PF02472	Biopolymer transport protein ExbD/TolR
RY45_22065	PF01618	RY45_22065
RY45_22070	PF01618	RY45_22070
RY45_22075	PF11932	RY45_22075
RY45_22080	PF00196	Bacterial regulatory proteins, luxR family
RY45_22080	PF03472	Autoinducer binding domain
RY45_22085	PF01380	SIS domain
RY45_22085	PF13522	Glutamine amidotransferase domain
RY45_22090	PF00455	RY45_22090
RY45_22090	PF08220	DeoR-like helix-turn-helix domain
RY45_22095	PF00072	Response regulator receiver domain
RY45_22095	PF00486	Transcriptional regulatory protein, C terminal
RY45_22100	PF00512	His Kinase A (phospho-acceptor) domain
RY45_22100	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
RY45_22105	PF00905	Penicillin binding protein transpeptidase domain
RY45_22110	PF06123	RY45_22110
RY45_22115	PF00132	Bacterial transferase hexapeptide (six repeats)
RY45_22115	PF12804	MobA-like NTP transferase domain
RY45_22120	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
RY45_22120	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
RY45_22125	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
RY45_22125	PF02874	ATP synthase alpha/beta family, beta-barrel domain
RY45_22130	PF00231	ATP synthase
RY45_22135	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
RY45_22135	PF00306	ATP synthase alpha/beta chain, C terminal domain
RY45_22135	PF02874	ATP synthase alpha/beta family, beta-barrel domain
RY45_22140	PF00213	ATP synthase delta (OSCP) subunit
RY45_22145	PF00430	ATP synthase B/B' CF(0)
RY45_22150	PF00137	ATP synthase subunit C
RY45_22155	PF00119	ATP synthase A chain
RY45_22160	PF03899	RY45_22160
RY45_22165	PF02195	ParB-like nuclease domain
RY45_22170	PF13614	AAA domain
RY45_22175	PF02527	rRNA small subunit methyltransferase G
RY45_22180	PF01134	Glucose inhibited division protein A
RY45_22180	PF13932	GidA associated domain 3
RY45_22185	PF00258	Flavodoxin
RY45_22190	PF00593	TonB dependent receptor
RY45_22190	PF07715	TonB-dependent Receptor Plug Domain
RY45_22195	PF00005	ABC transporter
RY45_22200	PF00005	ABC transporter
RY45_22205	PF01497	Periplasmic binding protein
RY45_22210	PF01032	FecCD transport family
RY45_22215	PF01926	50S ribosome-binding GTPase
RY45_22215	PF10396	GTP-binding protein TrmE N-terminus
RY45_22215	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
RY45_22220	PF02096	60Kd inner membrane protein
RY45_22220	PF14849	YidC periplasmic domain
RY45_22225	PF00825	Ribonuclease P
RY45_22230	PF00468	Ribosomal protein L34
RY45_22235	PF00005	ABC transporter
RY45_22240	PF00528	Binding-protein-dependent transport system inner membrane component
RY45_22245	PF00497	Bacterial extracellular solute-binding proteins, family 3
RY45_22280	PF01076	Plasmid recombination enzyme
RY45_22290	PF07878	RY45_22290
RY45_22295	PF05016	Plasmid stabilisation system protein
RY45_22300	PF03090	RY45_22300
RY45_22300	PF08708	Primase C terminal 1 (PriCT-1)
RY45_22310	PF05713	RY45_22310
RY45_22325	PF09274	ParG
RY45_22330	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
RY45_22335	PF05016	Plasmid stabilisation system protein