RY45_00005 SM00382 ATPases associated with a variety of cellular activities RY45_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RY45_00010 SM00480 DNA polymerase III beta subunit RY45_00020 SM00387 Histidine kinase-like ATPases RY45_00020 SM00433 TopoisomeraseII RY45_00055 SM00342 helix_turn_helix, arabinose operon control protein RY45_00065 SM00448 cheY-homologous receiver domain RY45_00065 SM00862 Transcriptional regulatory protein, C terminal RY45_00070 SM00387 Histidine kinase-like ATPases RY45_00070 SM00388 His Kinase A (phosphoacceptor) domain RY45_00095 SM00091 PAS domain RY45_00095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_00095 SM00387 Histidine kinase-like ATPases RY45_00135 SM00458 Ricin-type beta-trefoil RY45_00155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_00155 SM00387 Histidine kinase-like ATPases RY45_00155 SM00388 His Kinase A (phosphoacceptor) domain RY45_00160 SM00448 cheY-homologous receiver domain RY45_00190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_00190 SM00954 Region found in RelA / SpoT proteins RY45_00195 SM01409 RY45_00195 RY45_00200 SM00072 Guanylate kinase homologues. RY45_00215 SM00267 diguanylate cyclase RY45_00255 SM00267 diguanylate cyclase RY45_00305 SM00421 helix_turn_helix, Lux Regulon RY45_00305 SM00448 cheY-homologous receiver domain RY45_00310 SM00062 Bacterial periplasmic substrate-binding proteins RY45_00310 SM00387 Histidine kinase-like ATPases RY45_00310 SM00388 His Kinase A (phosphoacceptor) domain RY45_00310 SM00448 cheY-homologous receiver domain RY45_00320 SM00387 Histidine kinase-like ATPases RY45_00325 SM00448 cheY-homologous receiver domain RY45_00325 SM00850 LytTr DNA-binding domain RY45_00340 SM01001 AIR carboxylase RY45_00610 SM00530 Helix-turn-helix XRE-family like proteins RY45_00645 SM00360 RNA recognition motif RY45_00725 SM01004 Delta-aminolevulinic acid dehydratase RY45_00735 SM00052 Putative diguanylate phosphodiesterase RY45_00735 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_00735 SM00091 PAS domain RY45_00735 SM00267 diguanylate cyclase RY45_00760 SM00487 DEAD-like helicases superfamily RY45_00760 SM00490 helicase superfamily c-terminal domain RY45_00770 SM00357 Cold shock protein domain RY45_00770 SM00382 ATPases associated with a variety of cellular activities RY45_00770 SM00959 Rho termination factor, N-terminal domain RY45_00805 SM00450 Rhodanese Homology Domain RY45_00815 SM00342 helix_turn_helix, arabinose operon control protein RY45_00820 SM00382 ATPases associated with a variety of cellular activities RY45_00825 SM00382 ATPases associated with a variety of cellular activities RY45_00845 SM00354 helix_turn _helix lactose operon repressor RY45_00860 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_00860 SM00866 RY45_00860 RY45_00865 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_00865 SM00382 ATPases associated with a variety of cellular activities RY45_00870 SM00849 Metallo-beta-lactamase superfamily RY45_00925 SM00836 DALR anticodon binding domain RY45_00975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_00975 SM00387 Histidine kinase-like ATPases RY45_00975 SM00388 His Kinase A (phosphoacceptor) domain RY45_00980 SM00448 cheY-homologous receiver domain RY45_00980 SM00862 Transcriptional regulatory protein, C terminal RY45_01040 SM00881 CoA binding domain RY45_01115 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RY45_01115 SM01232 RY45_01115 RY45_01165 SM00354 helix_turn _helix lactose operon repressor RY45_01170 SM00829 Enoylreductase RY45_01195 SM00563 Phosphate acyltransferases RY45_01225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_01225 SM00387 Histidine kinase-like ATPases RY45_01225 SM00388 His Kinase A (phosphoacceptor) domain RY45_01230 SM00448 cheY-homologous receiver domain RY45_01230 SM00862 Transcriptional regulatory protein, C terminal RY45_01240 SM00971 Serine acetyltransferase, N-terminal RY45_01260 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RY45_01260 SM00474 3'-5' exonuclease RY45_01260 SM00475 5'-3' exonuclease RY45_01260 SM00482 DNA polymerase A domain RY45_01305 SM00354 helix_turn _helix lactose operon repressor RY45_01310 SM01038 Beta galactosidase small chain RY45_01355 SM00829 Enoylreductase RY45_01375 SM00382 ATPases associated with a variety of cellular activities RY45_01415 SM00326 Src homology 3 domains RY45_01475 SM00831 Cation transporter/ATPase, N-terminus RY45_01485 SM00342 helix_turn_helix, arabinose operon control protein RY45_01500 SM00530 Helix-turn-helix XRE-family like proteins RY45_01520 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RY45_01520 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RY45_01575 SM00257 Lysin motif RY45_01595 SM01001 AIR carboxylase RY45_01645 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_01655 SM00382 ATPases associated with a variety of cellular activities RY45_01655 SM00448 cheY-homologous receiver domain RY45_01660 SM00091 PAS domain RY45_01660 SM00387 Histidine kinase-like ATPases RY45_01660 SM00388 His Kinase A (phosphoacceptor) domain RY45_01670 SM01230 RY45_01670 RY45_01715 SM00487 DEAD-like helicases superfamily RY45_01715 SM00490 helicase superfamily c-terminal domain RY45_01720 SM00155 Phospholipase D. Active site motifs. RY45_01745 SM00354 helix_turn _helix lactose operon repressor RY45_01765 SM00450 Rhodanese Homology Domain RY45_01810 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_01810 SM00732 Likely ribonuclease with RNase H fold. RY45_01820 SM00448 cheY-homologous receiver domain RY45_01820 SM00862 Transcriptional regulatory protein, C terminal RY45_01825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_01825 SM00387 Histidine kinase-like ATPases RY45_01825 SM00388 His Kinase A (phosphoacceptor) domain RY45_01835 SM01403 RY45_01835 RY45_01855 SM01382 RY45_01855 RY45_01855 SM01383 RY45_01855 RY45_01870 SM00322 K homology RNA-binding domain RY45_01890 SM01374 RY45_01890 RY45_01950 SM00363 S4 RNA-binding domain RY45_01950 SM01390 RY45_01950 RY45_01955 SM00662 RNA polymerases D RY45_02020 SM00822 RY45_02020 RY45_02105 SM00062 Bacterial periplasmic substrate-binding proteins RY45_02110 SM00155 Phospholipase D. Active site motifs. RY45_02140 SM00382 ATPases associated with a variety of cellular activities RY45_02140 SM00962 SRP54-type protein, GTPase domain RY45_02140 SM00963 SRP54-type protein, helical bundle domain RY45_02145 SM00382 ATPases associated with a variety of cellular activities RY45_02160 SM00947 Carbonic anhydrase RY45_02165 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_02165 SM00866 RY45_02165 RY45_02195 SM00052 Putative diguanylate phosphodiesterase RY45_02200 SM00052 Putative diguanylate phosphodiesterase RY45_02200 SM00267 diguanylate cyclase RY45_02230 SM00965 Secretin and TonB N terminus short domain RY45_02245 SM00382 ATPases associated with a variety of cellular activities RY45_02315 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_02325 SM00886 Stress responsive A/B Barrel Domain RY45_02365 SM01126 RY45_02365 RY45_02390 SM00448 cheY-homologous receiver domain RY45_02390 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_02395 SM00387 Histidine kinase-like ATPases RY45_02395 SM00388 His Kinase A (phosphoacceptor) domain RY45_02395 SM00448 cheY-homologous receiver domain RY45_02400 SM00331 Sigma factor PP2C-like phosphatases RY45_02400 SM00387 Histidine kinase-like ATPases RY45_02410 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_02410 SM00091 PAS domain RY45_02415 SM00342 helix_turn_helix, arabinose operon control protein RY45_02455 SM01018 B12 binding domain RY45_02475 SM00388 His Kinase A (phosphoacceptor) domain RY45_02480 SM00448 cheY-homologous receiver domain RY45_02480 SM00862 Transcriptional regulatory protein, C terminal RY45_02535 SM00876 Biotin and Thiamin Synthesis associated domain RY45_02570 SM00267 diguanylate cyclase RY45_02680 SM01219 RY45_02680 RY45_02715 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_02745 SM00382 ATPases associated with a variety of cellular activities RY45_02760 SM00852 Probable molybdopterin binding domain RY45_02780 SM00344 helix_turn_helix ASNC type RY45_02800 SM00642 Alpha-amylase domain RY45_02965 SM00849 Metallo-beta-lactamase superfamily RY45_03070 SM00862 Transcriptional regulatory protein, C terminal RY45_03080 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RY45_03130 SM00487 DEAD-like helicases superfamily RY45_03130 SM00490 helicase superfamily c-terminal domain RY45_03175 SM00271 DnaJ molecular chaperone homology domain RY45_03210 SM00357 Cold shock protein domain RY45_03210 SM00955 RY45_03210 RY45_03225 SM00421 helix_turn_helix, Lux Regulon RY45_03260 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_03260 SM00895 RY45_03260 RY45_03275 SM00363 S4 RNA-binding domain RY45_03290 SM00382 ATPases associated with a variety of cellular activities RY45_03340 SM00421 helix_turn_helix, Lux Regulon RY45_03375 SM00342 helix_turn_helix, arabinose operon control protein RY45_03405 SM00859 Semialdehyde dehydrogenase, NAD binding domain RY45_03450 SM01266 RY45_03450 RY45_03480 SM00382 ATPases associated with a variety of cellular activities RY45_03495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_03495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_03495 SM01049 RY45_03495 RY45_03525 SM00245 tail specific protease RY45_03605 SM00487 DEAD-like helicases superfamily RY45_03605 SM00490 helicase superfamily c-terminal domain RY45_03625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_03690 SM00938 Nitrogen regulatory protein P-II RY45_03705 SM00382 ATPases associated with a variety of cellular activities RY45_03720 SM00382 ATPases associated with a variety of cellular activities RY45_03725 SM00062 Bacterial periplasmic substrate-binding proteins RY45_03725 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RY45_03750 SM00671 Sel1-like repeats. RY45_03765 SM01091 Transporter associated domain RY45_03775 SM00382 ATPases associated with a variety of cellular activities RY45_03775 SM00962 SRP54-type protein, GTPase domain RY45_03775 SM00963 SRP54-type protein, helical bundle domain RY45_03805 SM00927 DNA mismatch repair enzyme MutH RY45_03820 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_03850 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RY45_03865 SM00904 Riboflavin kinase RY45_03950 SM00938 Nitrogen regulatory protein P-II RY45_03965 SM00267 diguanylate cyclase RY45_03970 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_03970 SM00357 Cold shock protein domain RY45_03970 SM00955 RY45_03970 RY45_03980 SM00967 RNA 2'-O ribose methyltransferase substrate binding RY45_04045 SM00829 Enoylreductase RY45_04090 SM00382 ATPases associated with a variety of cellular activities RY45_04095 SM00327 von Willebrand factor (vWF) type A domain RY45_04100 SM00028 Tetratricopeptide repeats RY45_04100 SM00267 diguanylate cyclase RY45_04115 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_04125 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_04170 SM00849 Metallo-beta-lactamase superfamily RY45_04185 SM00487 DEAD-like helicases superfamily RY45_04185 SM00490 helicase superfamily c-terminal domain RY45_04290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_04290 SM00387 Histidine kinase-like ATPases RY45_04290 SM00388 His Kinase A (phosphoacceptor) domain RY45_04295 SM00448 cheY-homologous receiver domain RY45_04295 SM00862 Transcriptional regulatory protein, C terminal RY45_04305 SM00382 ATPases associated with a variety of cellular activities RY45_04310 SM00062 Bacterial periplasmic substrate-binding proteins RY45_04315 SM00382 ATPases associated with a variety of cellular activities RY45_04350 SM00822 RY45_04350 RY45_04365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_04365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_04375 SM00287 Bacterial SH3 domain homologues RY45_04400 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_04500 SM00358 Double-stranded RNA binding motif RY45_04500 SM00535 Ribonuclease III family RY45_04565 SM00420 helix_turn_helix, Deoxyribose operon repressor RY45_04565 SM01134 RY45_04565 RY45_04570 SM00644 RY45_04570 RY45_04580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_04580 SM00387 Histidine kinase-like ATPases RY45_04580 SM00388 His Kinase A (phosphoacceptor) domain RY45_04580 SM00448 cheY-homologous receiver domain RY45_04590 SM00954 Region found in RelA / SpoT proteins RY45_04605 SM01192 RY45_04605 RY45_04605 SM01193 RY45_04605 RY45_04645 SM00257 Lysin motif RY45_04665 SM00400 zinc finger RY45_04665 SM00493 RY45_04665 RY45_04665 SM00766 DNA primase DnaG DnaB-binding RY45_04685 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RY45_04685 SM00632 RY45_04685 RY45_04685 SM00642 Alpha-amylase domain RY45_04700 SM01209 RY45_04700 RY45_04700 SM01210 RY45_04700 RY45_04705 SM00798 AICARFT/IMPCHase bienzyme RY45_04705 SM00851 MGS-like domain RY45_04710 SM00422 helix_turn_helix, mercury resistance RY45_04725 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_04800 SM00883 Chaperonin 10 Kd subunit RY45_04815 SM00052 Putative diguanylate phosphodiesterase RY45_04815 SM00267 diguanylate cyclase RY45_04825 SM00487 DEAD-like helicases superfamily RY45_04825 SM00490 helicase superfamily c-terminal domain RY45_04870 SM00670 Large family of predicted nucleotide-binding domains RY45_04875 SM00382 ATPases associated with a variety of cellular activities RY45_04910 SM01329 RY45_04910 RY45_04915 SM00917 LeuA allosteric (dimerisation) domain RY45_04925 SM00014 Acid phosphatase homologues RY45_04975 SM01130 RY45_04975 RY45_05020 SM00073 Histidine Phosphotransfer domain RY45_05020 SM00091 PAS domain RY45_05020 SM00387 Histidine kinase-like ATPases RY45_05020 SM00388 His Kinase A (phosphoacceptor) domain RY45_05020 SM00448 cheY-homologous receiver domain RY45_05025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_05035 SM00062 Bacterial periplasmic substrate-binding proteins RY45_05035 SM00073 Histidine Phosphotransfer domain RY45_05035 SM00091 PAS domain RY45_05035 SM00387 Histidine kinase-like ATPases RY45_05035 SM00388 His Kinase A (phosphoacceptor) domain RY45_05035 SM00448 cheY-homologous receiver domain RY45_05040 SM00052 Putative diguanylate phosphodiesterase RY45_05040 SM00448 cheY-homologous receiver domain RY45_05045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_05045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_05050 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RY45_05065 SM00382 ATPases associated with a variety of cellular activities RY45_05065 SM00930 RY45_05065 RY45_05100 SM00257 Lysin motif RY45_05100 SM00646 RY45_05100 RY45_05105 SM00853 MutL C terminal dimerisation domain RY45_05105 SM01340 RY45_05105 RY45_05125 SM00244 prohibitin homologues RY45_05130 SM00244 prohibitin homologues RY45_05180 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_05190 SM00530 Helix-turn-helix XRE-family like proteins RY45_05210 SM00650 Ribosomal RNA adenine dimethylases RY45_05240 SM00271 DnaJ molecular chaperone homology domain RY45_05255 SM00382 ATPases associated with a variety of cellular activities RY45_05305 SM01133 RY45_05305 RY45_05325 SM00382 ATPases associated with a variety of cellular activities RY45_05375 SM00530 Helix-turn-helix XRE-family like proteins RY45_05385 SM00387 Histidine kinase-like ATPases RY45_05385 SM00388 His Kinase A (phosphoacceptor) domain RY45_05385 SM00448 cheY-homologous receiver domain RY45_05390 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RY45_05390 SM00495 Chitin-binding domain type 3 RY45_05390 SM00636 RY45_05390 RY45_05400 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RY45_05400 SM00495 Chitin-binding domain type 3 RY45_05410 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_05410 SM00419 helix_turn_helix, cAMP Regulatory protein RY45_05470 SM00984 UDP binding domain RY45_05480 SM00267 diguanylate cyclase RY45_05490 SM00260 Two component signalling adaptor domain RY45_05490 SM00448 cheY-homologous receiver domain RY45_05515 SM00320 WD40 repeats RY45_05525 SM00382 ATPases associated with a variety of cellular activities RY45_05525 SM00448 cheY-homologous receiver domain RY45_05550 SM00052 Putative diguanylate phosphodiesterase RY45_05555 SM00978 RY45_05555 RY45_05560 SM00382 ATPases associated with a variety of cellular activities RY45_05565 SM01005 Alanine racemase, C-terminal domain RY45_05580 SM00052 Putative diguanylate phosphodiesterase RY45_05600 SM00421 helix_turn_helix, Lux Regulon RY45_05600 SM00448 cheY-homologous receiver domain RY45_05605 SM00062 Bacterial periplasmic substrate-binding proteins RY45_05605 SM00387 Histidine kinase-like ATPases RY45_05605 SM00388 His Kinase A (phosphoacceptor) domain RY45_05605 SM00448 cheY-homologous receiver domain RY45_05635 SM00448 cheY-homologous receiver domain RY45_05645 SM00138 Methyltransferase, chemotaxis proteins RY45_05650 SM00091 PAS domain RY45_05650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_05650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_05655 SM00260 Two component signalling adaptor domain RY45_05660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_05660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_05665 SM00073 Histidine Phosphotransfer domain RY45_05665 SM00260 Two component signalling adaptor domain RY45_05665 SM00387 Histidine kinase-like ATPases RY45_05665 SM01231 RY45_05665 RY45_05675 SM00448 cheY-homologous receiver domain RY45_05680 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_05725 SM00342 helix_turn_helix, arabinose operon control protein RY45_05725 SM00478 endonuclease III RY45_05725 SM01009 AlkA N-terminal domain RY45_05740 SM00463 Small MutS-related domain RY45_05765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_05765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_05775 SM01007 Class II Aldolase and Adducin N-terminal domain RY45_05835 SM00830 Chorismate mutase type II RY45_05870 SM00422 helix_turn_helix, mercury resistance RY45_05960 SM00912 haemagglutination activity domain RY45_06005 SM00421 helix_turn_helix, Lux Regulon RY45_06115 SM00900 RY45_06115 RY45_06155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_06155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_06185 SM01329 RY45_06185 RY45_06190 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RY45_06190 SM00475 5'-3' exonuclease RY45_06200 SM00267 diguanylate cyclase RY45_06205 SM00028 Tetratricopeptide repeats RY45_06285 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_06330 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RY45_06340 SM00935 Outer membrane protein (OmpH-like) RY45_06370 SM00481 DNA polymerase alpha chain like domain RY45_06380 SM00862 Transcriptional regulatory protein, C terminal RY45_06415 SM00849 Metallo-beta-lactamase superfamily RY45_06450 SM00382 ATPases associated with a variety of cellular activities RY45_06465 SM00977 TilS substrate C-terminal domain RY45_06470 SM00267 diguanylate cyclase RY45_06495 SM00421 helix_turn_helix, Lux Regulon RY45_06495 SM00448 cheY-homologous receiver domain RY45_06505 SM00642 Alpha-amylase domain RY45_06530 SM00062 Bacterial periplasmic substrate-binding proteins RY45_06565 SM00771 ZipA, C-terminal domain (FtsZ-binding) RY45_06570 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RY45_06570 SM00292 breast cancer carboxy-terminal domain RY45_06570 SM00532 Ligase N family RY45_06605 SM00062 Bacterial periplasmic substrate-binding proteins RY45_06620 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_06630 SM00919 Malic enzyme, NAD binding domain RY45_06630 SM01274 RY45_06630 RY45_06635 SM00387 Histidine kinase-like ATPases RY45_06640 SM00448 cheY-homologous receiver domain RY45_06650 SM00342 helix_turn_helix, arabinose operon control protein RY45_06660 SM00382 ATPases associated with a variety of cellular activities RY45_06680 SM00448 cheY-homologous receiver domain RY45_06680 SM00862 Transcriptional regulatory protein, C terminal RY45_06685 SM00387 Histidine kinase-like ATPases RY45_06685 SM00388 His Kinase A (phosphoacceptor) domain RY45_06725 SM00382 ATPases associated with a variety of cellular activities RY45_06740 SM00062 Bacterial periplasmic substrate-binding proteins RY45_06755 SM00382 ATPases associated with a variety of cellular activities RY45_06825 SM00267 diguanylate cyclase RY45_06840 SM00342 helix_turn_helix, arabinose operon control protein RY45_06845 SM00919 Malic enzyme, NAD binding domain RY45_06845 SM01274 RY45_06845 RY45_06870 SM00530 Helix-turn-helix XRE-family like proteins RY45_06885 SM00267 diguanylate cyclase RY45_06905 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_06950 SM00642 Alpha-amylase domain RY45_06970 SM00155 Phospholipase D. Active site motifs. RY45_07090 SM00327 von Willebrand factor (vWF) type A domain RY45_07095 SM00382 ATPases associated with a variety of cellular activities RY45_07125 SM00481 DNA polymerase alpha chain like domain RY45_07165 SM00387 Histidine kinase-like ATPases RY45_07170 SM00448 cheY-homologous receiver domain RY45_07170 SM00862 Transcriptional regulatory protein, C terminal RY45_07175 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_07180 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_07210 SM00382 ATPases associated with a variety of cellular activities RY45_07270 SM00382 ATPases associated with a variety of cellular activities RY45_07270 SM00962 SRP54-type protein, GTPase domain RY45_07285 SM00448 cheY-homologous receiver domain RY45_07295 SM00073 Histidine Phosphotransfer domain RY45_07295 SM00260 Two component signalling adaptor domain RY45_07295 SM00387 Histidine kinase-like ATPases RY45_07295 SM01231 RY45_07295 RY45_07300 SM00448 cheY-homologous receiver domain RY45_07320 SM00260 Two component signalling adaptor domain RY45_07325 SM00260 Two component signalling adaptor domain RY45_07335 SM00382 ATPases associated with a variety of cellular activities RY45_07440 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. RY45_07520 SM00422 helix_turn_helix, mercury resistance RY45_07530 SM00354 helix_turn _helix lactose operon repressor RY45_07570 SM00342 helix_turn_helix, arabinose operon control protein RY45_07575 SM01329 RY45_07575 RY45_07615 SM00487 DEAD-like helicases superfamily RY45_07615 SM00490 helicase superfamily c-terminal domain RY45_08020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_08020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_08045 SM01091 Transporter associated domain RY45_08105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_08115 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_08115 SM00876 Biotin and Thiamin Synthesis associated domain RY45_08140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_08155 SM00890 Domain of unknown function RY45_08230 SM00458 Ricin-type beta-trefoil RY45_08310 SM01081 Putative carbohydrate binding domain RY45_08365 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_08390 SM00382 ATPases associated with a variety of cellular activities RY45_08465 SM00052 Putative diguanylate phosphodiesterase RY45_08465 SM00267 diguanylate cyclase RY45_08475 SM00354 helix_turn _helix lactose operon repressor RY45_08500 SM00257 Lysin motif RY45_08505 SM00849 Metallo-beta-lactamase superfamily RY45_08520 SM00479 RY45_08520 RY45_08550 SM00382 ATPases associated with a variety of cellular activities RY45_08555 SM00091 PAS domain RY45_08555 SM00387 Histidine kinase-like ATPases RY45_08555 SM00388 His Kinase A (phosphoacceptor) domain RY45_08560 SM00382 ATPases associated with a variety of cellular activities RY45_08560 SM00448 cheY-homologous receiver domain RY45_08625 SM00382 ATPases associated with a variety of cellular activities RY45_08650 SM01091 Transporter associated domain RY45_08680 SM00382 ATPases associated with a variety of cellular activities RY45_08690 SM00062 Bacterial periplasmic substrate-binding proteins RY45_08690 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RY45_08695 SM00267 diguanylate cyclase RY45_08705 SM00387 Histidine kinase-like ATPases RY45_08710 SM00421 helix_turn_helix, Lux Regulon RY45_08710 SM00448 cheY-homologous receiver domain RY45_08735 SM00098 Alkaline phosphatase homologues RY45_08740 SM00098 Alkaline phosphatase homologues RY45_08765 SM00491 RY45_08765 RY45_08790 SM00852 Probable molybdopterin binding domain RY45_08800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_08800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_08820 SM00867 YceI-like domain RY45_08830 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RY45_08840 SM00563 Phosphate acyltransferases RY45_08870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_08870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_08895 SM00855 Phosphoglycerate mutase family RY45_08900 SM00507 HNH nucleases RY45_08920 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RY45_08925 SM00363 S4 RNA-binding domain RY45_08950 SM00871 Bacterial transcription activator, effector binding domain RY45_08975 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_09040 SM00420 helix_turn_helix, Deoxyribose operon repressor RY45_09040 SM01134 RY45_09040 RY45_09055 SM01126 RY45_09055 RY45_09065 SM00830 Chorismate mutase type II RY45_09140 SM00382 ATPases associated with a variety of cellular activities RY45_09210 SM00382 ATPases associated with a variety of cellular activities RY45_09215 SM00062 Bacterial periplasmic substrate-binding proteins RY45_09215 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RY45_09240 SM00052 Putative diguanylate phosphodiesterase RY45_09240 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_09240 SM00091 PAS domain RY45_09240 SM00267 diguanylate cyclase RY45_09245 SM00450 Rhodanese Homology Domain RY45_09250 SM01359 RY45_09250 RY45_09250 SM01360 RY45_09250 RY45_09265 SM00981 RY45_09265 RY45_09340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_09340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_09405 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RY45_09410 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RY45_09420 SM00382 ATPases associated with a variety of cellular activities RY45_09460 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_09475 SM01323 RY45_09475 RY45_09490 SM00450 Rhodanese Homology Domain RY45_09495 SM00028 Tetratricopeptide repeats RY45_09545 SM00271 DnaJ molecular chaperone homology domain RY45_09570 SM00562 RY45_09570 RY45_09580 SM00028 Tetratricopeptide repeats RY45_09585 SM00530 Helix-turn-helix XRE-family like proteins RY45_09605 SM00564 beta-propeller repeat RY45_09620 SM00062 Bacterial periplasmic substrate-binding proteins RY45_09625 SM01211 RY45_09625 RY45_09630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_09635 SM00091 PAS domain RY45_09635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_09640 SM00897 FIST N domain RY45_09640 SM01204 RY45_09640 RY45_09680 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_09680 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RY45_09685 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RY45_09750 SM00360 RNA recognition motif RY45_09775 SM00091 PAS domain RY45_09780 SM00448 cheY-homologous receiver domain RY45_09795 SM00052 Putative diguanylate phosphodiesterase RY45_09795 SM00267 diguanylate cyclase RY45_09840 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_09845 SM00411 bacterial (prokaryotic) histone like domain RY45_09855 SM00028 Tetratricopeptide repeats RY45_09860 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RY45_09870 SM01144 RY45_09870 RY45_09895 SM00528 Domain in histone-like proteins of HNS family RY45_09910 SM01154 RY45_09910 RY45_09940 SM01126 RY45_09940 RY45_09975 SM00357 Cold shock protein domain RY45_09985 SM00382 ATPases associated with a variety of cellular activities RY45_09985 SM01086 C-terminal, D2-small domain, of ClpB protein RY45_09990 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_10010 SM00267 diguanylate cyclase RY45_10010 SM00448 cheY-homologous receiver domain RY45_10020 SM00344 helix_turn_helix ASNC type RY45_10025 SM00843 RY45_10025 RY45_10035 SM00382 ATPases associated with a variety of cellular activities RY45_10065 SM00382 ATPases associated with a variety of cellular activities RY45_10070 SM00382 ATPases associated with a variety of cellular activities RY45_10090 SM00382 ATPases associated with a variety of cellular activities RY45_10130 SM00091 PAS domain RY45_10130 SM00382 ATPases associated with a variety of cellular activities RY45_10140 SM00267 diguanylate cyclase RY45_10140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_10205 SM01007 Class II Aldolase and Adducin N-terminal domain RY45_10220 SM00382 ATPases associated with a variety of cellular activities RY45_10230 SM00342 helix_turn_helix, arabinose operon control protein RY45_10295 SM00825 Beta-ketoacyl synthase RY45_10335 SM00861 Transketolase, pyrimidine binding domain RY45_10350 SM00881 CoA binding domain RY45_10375 SM00382 ATPases associated with a variety of cellular activities RY45_10385 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_10385 SM00866 RY45_10385 RY45_10425 SM00859 Semialdehyde dehydrogenase, NAD binding domain RY45_10455 SM00822 RY45_10455 RY45_10460 SM00342 helix_turn_helix, arabinose operon control protein RY45_10460 SM00871 Bacterial transcription activator, effector binding domain RY45_10490 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_10590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_10590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_10590 SM01049 RY45_10590 RY45_10600 SM00387 Histidine kinase-like ATPases RY45_10605 SM00448 cheY-homologous receiver domain RY45_10625 SM00062 Bacterial periplasmic substrate-binding proteins RY45_10640 SM00487 DEAD-like helicases superfamily RY45_10640 SM00490 helicase superfamily c-terminal domain RY45_10665 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_10680 SM00763 PrkA AAA domain RY45_10685 SM00487 DEAD-like helicases superfamily RY45_10685 SM00490 helicase superfamily c-terminal domain RY45_10745 SM00387 Histidine kinase-like ATPases RY45_10745 SM00388 His Kinase A (phosphoacceptor) domain RY45_10745 SM00448 cheY-homologous receiver domain RY45_10750 SM00382 ATPases associated with a variety of cellular activities RY45_10755 SM00382 ATPases associated with a variety of cellular activities RY45_10820 SM01118 RY45_10820 RY45_10845 SM00487 DEAD-like helicases superfamily RY45_10845 SM00490 helicase superfamily c-terminal domain RY45_10855 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. RY45_10870 SM01144 RY45_10870 RY45_10890 SM00342 helix_turn_helix, arabinose operon control protein RY45_10905 SM00642 Alpha-amylase domain RY45_11040 SM00782 PhnA Zinc-Ribbon RY45_11065 SM00855 Phosphoglycerate mutase family RY45_11070 SM00091 PAS domain RY45_11070 SM00267 diguanylate cyclase RY45_11080 SM00463 Small MutS-related domain RY45_11095 SM00062 Bacterial periplasmic substrate-binding proteins RY45_11100 SM00487 DEAD-like helicases superfamily RY45_11100 SM00490 helicase superfamily c-terminal domain RY45_11105 SM00953 RY45_11105 RY45_11120 SM00354 helix_turn _helix lactose operon repressor RY45_11145 SM00354 helix_turn _helix lactose operon repressor RY45_11185 SM00925 MltA specific insert domain RY45_11215 SM00434 DNA Topoisomerase IV RY45_11225 SM00671 Sel1-like repeats. RY45_11230 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RY45_11255 SM00873 B3/4 domain RY45_11255 SM00874 tRNA synthetase B5 domain RY45_11255 SM00896 Ferredoxin-fold anticodon binding domain RY45_11260 SM00411 bacterial (prokaryotic) histone like domain RY45_11290 SM00267 diguanylate cyclase RY45_11295 SM00354 helix_turn _helix lactose operon repressor RY45_11315 SM00382 ATPases associated with a variety of cellular activities RY45_11350 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_11350 SM00419 helix_turn_helix, cAMP Regulatory protein RY45_11405 SM00945 ProQ/FINO family RY45_11410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RY45_11410 SM00245 tail specific protease RY45_11440 SM00981 RY45_11440 RY45_11450 SM00382 ATPases associated with a variety of cellular activities RY45_11485 SM00822 RY45_11485 RY45_11575 SM00382 ATPases associated with a variety of cellular activities RY45_11595 SM00825 Beta-ketoacyl synthase RY45_11605 SM00822 RY45_11605 RY45_11610 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RY45_11660 SM00363 S4 RNA-binding domain RY45_11665 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_11705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_11710 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RY45_11735 SM00450 Rhodanese Homology Domain RY45_11740 SM00849 Metallo-beta-lactamase superfamily RY45_11745 SM00448 cheY-homologous receiver domain RY45_11745 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_11750 SM00387 Histidine kinase-like ATPases RY45_11750 SM00388 His Kinase A (phosphoacceptor) domain RY45_11750 SM00448 cheY-homologous receiver domain RY45_11765 SM00382 ATPases associated with a variety of cellular activities RY45_11765 SM00487 DEAD-like helicases superfamily RY45_11765 SM00490 helicase superfamily c-terminal domain RY45_11765 SM00847 Helicase associated domain (HA2) Add an annotation RY45_11770 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_11775 SM00421 helix_turn_helix, Lux Regulon RY45_11790 SM00382 ATPases associated with a variety of cellular activities RY45_11815 SM00062 Bacterial periplasmic substrate-binding proteins RY45_11820 SM00341 Helicase and RNase D C-terminal RY45_11820 SM00474 3'-5' exonuclease RY45_11845 SM00491 RY45_11845 RY45_11885 SM00448 cheY-homologous receiver domain RY45_11885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_11890 SM00091 PAS domain RY45_11895 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_11895 SM00091 PAS domain RY45_11895 SM00387 Histidine kinase-like ATPases RY45_11895 SM00388 His Kinase A (phosphoacceptor) domain RY45_11895 SM00448 cheY-homologous receiver domain RY45_11940 SM00237 Domains in Na-Ca exchangers and integrin-beta4 RY45_11950 SM01092 CO dehydrogenase flavoprotein C-terminal domain RY45_11955 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RY45_11975 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RY45_11980 SM01092 CO dehydrogenase flavoprotein C-terminal domain RY45_12040 SM00382 ATPases associated with a variety of cellular activities RY45_12055 SM01322 RY45_12055 RY45_12085 SM00327 von Willebrand factor (vWF) type A domain RY45_12090 SM00028 Tetratricopeptide repeats RY45_12120 SM00052 Putative diguanylate phosphodiesterase RY45_12130 SM00422 helix_turn_helix, mercury resistance RY45_12210 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_12290 SM00486 DNA polymerase type-B family RY45_12300 SM00267 diguanylate cyclase RY45_12310 SM00090 RIO-like kinase RY45_12340 SM00518 AP endonuclease family 2 RY45_12350 SM00822 RY45_12350 RY45_12355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_12365 SM00052 Putative diguanylate phosphodiesterase RY45_12365 SM00267 diguanylate cyclase RY45_12385 SM00857 Resolvase, N terminal domain RY45_12400 SM00487 DEAD-like helicases superfamily RY45_12455 SM00822 RY45_12455 RY45_12500 SM00878 Biotin carboxylase C-terminal domain RY45_12510 SM00422 helix_turn_helix, mercury resistance RY45_12570 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_12570 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_12575 SM00479 RY45_12575 RY45_12590 SM00382 ATPases associated with a variety of cellular activities RY45_12605 SM00382 ATPases associated with a variety of cellular activities RY45_12605 SM00464 Found in ATP-dependent protease La (LON) RY45_12610 SM00382 ATPases associated with a variety of cellular activities RY45_12610 SM00994 ClpX C4-type zinc finger RY45_12610 SM01086 C-terminal, D2-small domain, of ClpB protein RY45_12630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_12640 SM00382 ATPases associated with a variety of cellular activities RY45_12655 SM00487 DEAD-like helicases superfamily RY45_12655 SM00490 helicase superfamily c-terminal domain RY45_12655 SM00982 RY45_12655 RY45_12655 SM01058 CarD-like/TRCF domain RY45_12680 SM00855 Phosphoglycerate mutase family RY45_12695 SM00364 Leucine-rich repeats, bacterial type RY45_12695 SM00369 Leucine-rich repeats, typical (most populated) subfamily RY45_12705 SM00342 helix_turn_helix, arabinose operon control protein RY45_12725 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_12725 SM01240 RY45_12725 RY45_12760 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_12765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_12765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_12785 SM00893 Electron transfer flavoprotein domain RY45_12790 SM00893 Electron transfer flavoprotein domain RY45_12835 SM00382 ATPases associated with a variety of cellular activities RY45_12855 SM00823 Phosphopantetheine attachment site RY45_12860 SM00822 RY45_12860 RY45_12865 SM00823 Phosphopantetheine attachment site RY45_12900 SM00052 Putative diguanylate phosphodiesterase RY45_12900 SM00267 diguanylate cyclase RY45_12935 SM00387 Histidine kinase-like ATPases RY45_12940 SM00493 RY45_12940 RY45_12950 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_12950 SM00382 ATPases associated with a variety of cellular activities RY45_12965 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_13060 SM00382 ATPases associated with a variety of cellular activities RY45_13065 SM00382 ATPases associated with a variety of cellular activities RY45_13115 SM00448 cheY-homologous receiver domain RY45_13125 SM00073 Histidine Phosphotransfer domain RY45_13125 SM00260 Two component signalling adaptor domain RY45_13125 SM00387 Histidine kinase-like ATPases RY45_13125 SM01231 RY45_13125 RY45_13130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_13135 SM00260 Two component signalling adaptor domain RY45_13140 SM00138 Methyltransferase, chemotaxis proteins RY45_13145 SM00448 cheY-homologous receiver domain RY45_13150 SM00052 Putative diguanylate phosphodiesterase RY45_13150 SM00448 cheY-homologous receiver domain RY45_13155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_13155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_13160 SM01005 Alanine racemase, C-terminal domain RY45_13165 SM00873 B3/4 domain RY45_13170 SM00530 Helix-turn-helix XRE-family like proteins RY45_13240 SM00382 ATPases associated with a variety of cellular activities RY45_13495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_13495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_13530 SM01005 Alanine racemase, C-terminal domain RY45_13540 SM00382 ATPases associated with a variety of cellular activities RY45_13545 SM00382 ATPases associated with a variety of cellular activities RY45_13580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_13585 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_13590 SM00448 cheY-homologous receiver domain RY45_13590 SM00850 LytTr DNA-binding domain RY45_13610 SM00487 DEAD-like helicases superfamily RY45_13610 SM00490 helicase superfamily c-terminal domain RY45_13645 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_13645 SM00091 PAS domain RY45_13645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_13680 SM00900 RY45_13680 RY45_13690 SM00478 endonuclease III RY45_13690 SM00525 RY45_13690 RY45_13705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_13710 SM00479 RY45_13710 RY45_13720 SM00487 DEAD-like helicases superfamily RY45_13720 SM00490 helicase superfamily c-terminal domain RY45_13745 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_13745 SM01091 Transporter associated domain RY45_13820 SM00267 diguanylate cyclase RY45_13825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_13915 SM00342 helix_turn_helix, arabinose operon control protein RY45_13995 SM00382 ATPases associated with a variety of cellular activities RY45_14085 SM00859 Semialdehyde dehydrogenase, NAD binding domain RY45_14095 SM00014 Acid phosphatase homologues RY45_14135 SM01217 RY45_14135 RY45_14140 SM00342 helix_turn_helix, arabinose operon control protein RY45_14185 SM00052 Putative diguanylate phosphodiesterase RY45_14185 SM00267 diguanylate cyclase RY45_14205 SM00382 ATPases associated with a variety of cellular activities RY45_14210 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_14230 SM00382 ATPases associated with a variety of cellular activities RY45_14240 SM00062 Bacterial periplasmic substrate-binding proteins RY45_14255 SM00422 helix_turn_helix, mercury resistance RY45_14270 SM01351 RY45_14270 RY45_14280 SM00487 DEAD-like helicases superfamily RY45_14280 SM00490 helicase superfamily c-terminal domain RY45_14295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_14320 SM00917 LeuA allosteric (dimerisation) domain RY45_14325 SM00851 MGS-like domain RY45_14325 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RY45_14330 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RY45_14380 SM00382 ATPases associated with a variety of cellular activities RY45_14390 SM00062 Bacterial periplasmic substrate-binding proteins RY45_14400 SM00382 ATPases associated with a variety of cellular activities RY45_14425 SM00899 RY45_14425 RY45_14455 SM00062 Bacterial periplasmic substrate-binding proteins RY45_14460 SM00062 Bacterial periplasmic substrate-binding proteins RY45_14465 SM00267 diguanylate cyclase RY45_14480 SM00840 RY45_14480 RY45_14535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_14540 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_14540 SM00091 PAS domain RY45_14540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_14565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RY45_14565 SM00465 GIY-YIG type nucleases (URI domain) RY45_14570 SM00421 helix_turn_helix, Lux Regulon RY45_14570 SM00448 cheY-homologous receiver domain RY45_14590 SM00382 ATPases associated with a variety of cellular activities RY45_14595 SM00849 Metallo-beta-lactamase superfamily RY45_14640 SM00382 ATPases associated with a variety of cellular activities RY45_14670 SM00852 Probable molybdopterin binding domain RY45_14695 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_14710 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_14715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_14715 SM00387 Histidine kinase-like ATPases RY45_14720 SM00421 helix_turn_helix, Lux Regulon RY45_14720 SM00448 cheY-homologous receiver domain RY45_14725 SM00464 Found in ATP-dependent protease La (LON) RY45_14730 SM00387 Histidine kinase-like ATPases RY45_14730 SM00388 His Kinase A (phosphoacceptor) domain RY45_14730 SM00448 cheY-homologous receiver domain RY45_14735 SM00897 FIST N domain RY45_14735 SM01204 RY45_14735 RY45_14745 SM00073 Histidine Phosphotransfer domain RY45_14765 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_14770 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_14770 SM00924 MgtE intracellular N domain RY45_14785 SM00047 Lysozyme subfamily 2 RY45_14830 SM00138 Methyltransferase, chemotaxis proteins RY45_14835 SM00260 Two component signalling adaptor domain RY45_14835 SM00448 cheY-homologous receiver domain RY45_14840 SM00858 RY45_14840 RY45_14870 SM00363 S4 RNA-binding domain RY45_14875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_14900 SM00420 helix_turn_helix, Deoxyribose operon repressor RY45_14900 SM01134 RY45_14900 RY45_14935 SM00357 Cold shock protein domain RY45_14945 SM00861 Transketolase, pyrimidine binding domain RY45_14970 SM00487 DEAD-like helicases superfamily RY45_14970 SM00490 helicase superfamily c-terminal domain RY45_15035 SM00984 UDP binding domain RY45_15085 SM00363 S4 RNA-binding domain RY45_15105 SM00481 DNA polymerase alpha chain like domain RY45_15155 SM00247 Beta/gamma crystallins RY45_15265 SM00028 Tetratricopeptide repeats RY45_15265 SM00448 cheY-homologous receiver domain RY45_15325 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_15325 SM00091 PAS domain RY45_15325 SM00267 diguanylate cyclase RY45_15350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RY45_15370 SM00271 DnaJ molecular chaperone homology domain RY45_15395 SM01131 RY45_15395 RY45_15410 SM00382 ATPases associated with a variety of cellular activities RY45_15435 SM00528 Domain in histone-like proteins of HNS family RY45_15470 SM00530 Helix-turn-helix XRE-family like proteins RY45_15520 SM00062 Bacterial periplasmic substrate-binding proteins RY45_15520 SM00387 Histidine kinase-like ATPases RY45_15520 SM00388 His Kinase A (phosphoacceptor) domain RY45_15520 SM00448 cheY-homologous receiver domain RY45_15520 SM00918 Ligated ion channel L-glutamate- and glycine-binding site RY45_15560 SM00382 ATPases associated with a variety of cellular activities RY45_15615 SM00448 cheY-homologous receiver domain RY45_15615 SM00862 Transcriptional regulatory protein, C terminal RY45_15630 SM00382 ATPases associated with a variety of cellular activities RY45_15635 SM00382 ATPases associated with a variety of cellular activities RY45_15670 SM00382 ATPases associated with a variety of cellular activities RY45_15695 SM00267 diguanylate cyclase RY45_15795 SM00919 Malic enzyme, NAD binding domain RY45_15795 SM01274 RY45_15795 RY45_15800 SM00387 Histidine kinase-like ATPases RY45_15800 SM00448 cheY-homologous receiver domain RY45_15815 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_15855 SM00387 Histidine kinase-like ATPases RY45_15855 SM00388 His Kinase A (phosphoacceptor) domain RY45_15860 SM00382 ATPases associated with a variety of cellular activities RY45_15860 SM00448 cheY-homologous receiver domain RY45_15875 SM00382 ATPases associated with a variety of cellular activities RY45_15885 SM00852 Probable molybdopterin binding domain RY45_15895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_15905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_15905 SM00091 PAS domain RY45_15905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_15955 SM00091 PAS domain RY45_15955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_15955 SM00387 Histidine kinase-like ATPases RY45_15955 SM00388 His Kinase A (phosphoacceptor) domain RY45_15955 SM00448 cheY-homologous receiver domain RY45_15975 SM00382 ATPases associated with a variety of cellular activities RY45_15980 SM00382 ATPases associated with a variety of cellular activities RY45_16000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_16010 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RY45_16010 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RY45_16010 SM00493 RY45_16010 RY45_16055 SM00788 Adenylosuccinate synthetase RY45_16065 SM00342 helix_turn_helix, arabinose operon control protein RY45_16075 SM00363 S4 RNA-binding domain RY45_16105 SM00861 Transketolase, pyrimidine binding domain RY45_16115 SM00731 SprT homologues. RY45_16135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_16145 SM00732 Likely ribonuclease with RNase H fold. RY45_16185 SM00460 Transglutaminase/protease-like homologues RY45_16210 SM00986 Uracil DNA glycosylase superfamily RY45_16210 SM00987 UreE urease accessory protein, C-terminal domain RY45_16245 SM00937 RY45_16245 RY45_16270 SM01400 RY45_16270 RY45_16345 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_16350 SM01022 RY45_16350 RY45_16360 SM00642 Alpha-amylase domain RY45_16370 SM00890 Domain of unknown function RY45_16385 SM01126 RY45_16385 RY45_16390 SM01150 RY45_16390 RY45_16455 SM00965 Secretin and TonB N terminus short domain RY45_16475 SM00842 Cell division protein FtsA RY45_16490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_16490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_16500 SM00849 Metallo-beta-lactamase superfamily RY45_16540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_16540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_16600 SM01236 RY45_16600 RY45_16605 SM00822 RY45_16605 RY45_16615 SM00448 cheY-homologous receiver domain RY45_16615 SM00862 Transcriptional regulatory protein, C terminal RY45_16620 SM00387 Histidine kinase-like ATPases RY45_16620 SM00388 His Kinase A (phosphoacceptor) domain RY45_16630 SM01240 RY45_16630 RY45_16640 SM00841 Elongation factor P, C-terminal RY45_16640 SM01185 RY45_16640 RY45_16665 SM00267 diguanylate cyclase RY45_16690 SM00267 diguanylate cyclase RY45_16695 SM00357 Cold shock protein domain RY45_16710 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_16725 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_16725 SM01091 Transporter associated domain RY45_16795 SM00936 Penicillin-binding protein 5, C-terminal domain RY45_16810 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_16830 SM00382 ATPases associated with a variety of cellular activities RY45_16870 SM00422 helix_turn_helix, mercury resistance RY45_16945 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_16960 SM00387 Histidine kinase-like ATPases RY45_16960 SM00388 His Kinase A (phosphoacceptor) domain RY45_16965 SM00421 helix_turn_helix, Lux Regulon RY45_16965 SM00448 cheY-homologous receiver domain RY45_16970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_16975 SM00448 cheY-homologous receiver domain RY45_16975 SM00850 LytTr DNA-binding domain RY45_17005 SM00267 diguanylate cyclase RY45_17015 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_17015 SM00322 K homology RNA-binding domain RY45_17020 SM01387 RY45_17020 RY45_17040 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_17080 SM00382 ATPases associated with a variety of cellular activities RY45_17090 SM01103 RY45_17090 RY45_17125 SM00861 Transketolase, pyrimidine binding domain RY45_17145 SM00382 ATPases associated with a variety of cellular activities RY45_17170 SM00020 Trypsin-like serine protease RY45_17235 SM00052 Putative diguanylate phosphodiesterase RY45_17235 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_17235 SM00091 PAS domain RY45_17235 SM00267 diguanylate cyclase RY45_17260 SM00878 Biotin carboxylase C-terminal domain RY45_17285 SM00829 Enoylreductase RY45_17300 SM01266 RY45_17300 RY45_17330 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_17340 SM00870 RY45_17340 RY45_17350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_17350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_17355 SM00937 RY45_17355 RY45_17395 SM00382 ATPases associated with a variety of cellular activities RY45_17420 SM00852 Probable molybdopterin binding domain RY45_17430 SM00825 Beta-ketoacyl synthase RY45_17435 SM00822 RY45_17435 RY45_17445 SM00825 Beta-ketoacyl synthase RY45_17505 SM00563 Phosphate acyltransferases RY45_17530 SM00477 DNA/RNA non-specific endonuclease RY45_17530 SM00892 DNA/RNA non-specific endonuclease RY45_17540 SM01057 Eukaryotic-type carbonic anhydrase RY45_17565 SM00382 ATPases associated with a variety of cellular activities RY45_17580 SM01012 RY45_17580 RY45_17590 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_17620 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RY45_17645 SM00382 ATPases associated with a variety of cellular activities RY45_17650 SM00382 ATPases associated with a variety of cellular activities RY45_17700 SM00028 Tetratricopeptide repeats RY45_17715 SM01126 RY45_17715 RY45_17755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_17755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_17765 SM00357 Cold shock protein domain RY45_17795 SM00479 RY45_17795 RY45_17835 SM00342 helix_turn_helix, arabinose operon control protein RY45_17845 SM00052 Putative diguanylate phosphodiesterase RY45_17845 SM00091 PAS domain RY45_17845 SM00267 diguanylate cyclase RY45_17875 SM00382 ATPases associated with a variety of cellular activities RY45_17890 SM00450 Rhodanese Homology Domain RY45_17920 SM00052 Putative diguanylate phosphodiesterase RY45_17935 SM00382 ATPases associated with a variety of cellular activities RY45_17945 SM00260 Two component signalling adaptor domain RY45_17945 SM00448 cheY-homologous receiver domain RY45_17985 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RY45_18000 SM00448 cheY-homologous receiver domain RY45_18010 SM00382 ATPases associated with a variety of cellular activities RY45_18105 SM00014 Acid phosphatase homologues RY45_18115 SM00448 cheY-homologous receiver domain RY45_18115 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_18145 SM00487 DEAD-like helicases superfamily RY45_18145 SM00490 helicase superfamily c-terminal domain RY45_18145 SM00847 Helicase associated domain (HA2) Add an annotation RY45_18190 SM00450 Rhodanese Homology Domain RY45_18230 SM00382 ATPases associated with a variety of cellular activities RY45_18285 SM00382 ATPases associated with a variety of cellular activities RY45_18305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_18340 SM00244 prohibitin homologues RY45_18350 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_18355 SM00382 ATPases associated with a variety of cellular activities RY45_18390 SM00422 helix_turn_helix, mercury resistance RY45_18450 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_18515 SM00344 helix_turn_helix ASNC type RY45_18530 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_18540 SM00829 Enoylreductase RY45_18560 SM00642 Alpha-amylase domain RY45_18565 SM00642 Alpha-amylase domain RY45_18575 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_18590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_18590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_18680 SM00382 ATPases associated with a variety of cellular activities RY45_18685 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RY45_18690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_18690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_18750 SM01152 RY45_18750 RY45_18770 SM00382 ATPases associated with a variety of cellular activities RY45_18785 SM00487 DEAD-like helicases superfamily RY45_18785 SM00490 helicase superfamily c-terminal domain RY45_18830 SM00411 bacterial (prokaryotic) histone like domain RY45_18845 SM00382 ATPases associated with a variety of cellular activities RY45_18870 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_18870 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_18870 SM00091 PAS domain RY45_18870 SM00267 diguanylate cyclase RY45_18885 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RY45_18890 SM01133 RY45_18890 RY45_18940 SM00530 Helix-turn-helix XRE-family like proteins RY45_18970 SM00530 Helix-turn-helix XRE-family like proteins RY45_19170 SM01091 Transporter associated domain RY45_19225 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RY45_19235 SM00382 ATPases associated with a variety of cellular activities RY45_19245 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RY45_19245 SM00534 ATPase domain of DNA mismatch repair MUTS family RY45_19260 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_19265 SM01126 RY45_19265 RY45_19305 SM00382 ATPases associated with a variety of cellular activities RY45_19325 SM00986 Uracil DNA glycosylase superfamily RY45_19325 SM00987 UreE urease accessory protein, C-terminal domain RY45_19360 SM00563 Phosphate acyltransferases RY45_19385 SM00271 DnaJ molecular chaperone homology domain RY45_19425 SM00434 DNA Topoisomerase IV RY45_19430 SM00387 Histidine kinase-like ATPases RY45_19430 SM00433 TopoisomeraseII RY45_19500 SM01118 RY45_19500 RY45_19530 SM00450 Rhodanese Homology Domain RY45_19540 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_19570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_19575 SM00382 ATPases associated with a variety of cellular activities RY45_19585 SM00478 endonuclease III RY45_19585 SM00525 RY45_19585 RY45_19610 SM00062 Bacterial periplasmic substrate-binding proteins RY45_19650 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_19650 SM00267 diguanylate cyclase RY45_19655 SM01130 RY45_19655 RY45_19725 SM00382 ATPases associated with a variety of cellular activities RY45_19755 SM00344 helix_turn_helix ASNC type RY45_19760 SM01266 RY45_19760 RY45_19765 SM00642 Alpha-amylase domain RY45_19775 SM00354 helix_turn _helix lactose operon repressor RY45_19790 SM00870 RY45_19790 RY45_19805 SM00851 MGS-like domain RY45_19840 SM00260 Two component signalling adaptor domain RY45_19840 SM00448 cheY-homologous receiver domain RY45_19920 SM01207 RY45_19920 RY45_19925 SM00905 Dihydroneopterin aldolase RY45_19945 SM00833 Cobalamin synthesis protein cobW C-terminal domain RY45_19965 SM00052 Putative diguanylate phosphodiesterase RY45_20010 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_20010 SM00895 RY45_20010 RY45_20075 SM00957 SecA DEAD-like domain RY45_20075 SM00958 SecA preprotein cross-linking domain RY45_20090 SM00864 Tubulin/FtsZ family, GTPase domain RY45_20090 SM00865 Tubulin/FtsZ family, C-terminal domain RY45_20095 SM00842 Cell division protein FtsA RY45_20285 SM00858 RY45_20285 RY45_20330 SM00382 ATPases associated with a variety of cellular activities RY45_20330 SM00448 cheY-homologous receiver domain RY45_20390 SM00749 bacterial OsmY and nodulation domain RY45_20440 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RY45_20445 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RY45_20520 SM00382 ATPases associated with a variety of cellular activities RY45_20540 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_20545 SM00382 ATPases associated with a variety of cellular activities RY45_20625 SM00530 Helix-turn-helix XRE-family like proteins RY45_20655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_20655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_20665 SM00267 diguanylate cyclase RY45_20675 SM00421 helix_turn_helix, Lux Regulon RY45_20685 SM00062 Bacterial periplasmic substrate-binding proteins RY45_20700 SM00357 Cold shock protein domain RY45_20715 SM00062 Bacterial periplasmic substrate-binding proteins RY45_20715 SM00267 diguanylate cyclase RY45_20720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_20720 SM00387 Histidine kinase-like ATPases RY45_20720 SM00388 His Kinase A (phosphoacceptor) domain RY45_20725 SM00448 cheY-homologous receiver domain RY45_20725 SM00862 Transcriptional regulatory protein, C terminal RY45_20750 SM00091 PAS domain RY45_20750 SM00267 diguanylate cyclase RY45_20755 SM00342 helix_turn_helix, arabinose operon control protein RY45_20805 SM00530 Helix-turn-helix XRE-family like proteins RY45_20810 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_20810 SM00866 RY45_20810 RY45_20835 SM00382 ATPases associated with a variety of cellular activities RY45_20845 SM00267 diguanylate cyclase RY45_20860 SM00342 helix_turn_helix, arabinose operon control protein RY45_20860 SM00871 Bacterial transcription activator, effector binding domain RY45_20870 SM01060 RY45_20870 RY45_20895 SM00014 Acid phosphatase homologues RY45_20925 SM00091 PAS domain RY45_20940 SM01120 RY45_20940 RY45_20950 SM01126 RY45_20950 RY45_21040 SM00663 RNA polymerase I subunit A N-terminus RY45_21065 SM00649 Ribosomal protein L11/L12 RY45_21070 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RY45_21070 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RY45_21125 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RY45_21125 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RY45_21125 SM00493 RY45_21125 RY45_21145 SM00387 Histidine kinase-like ATPases RY45_21150 SM00448 cheY-homologous receiver domain RY45_21150 SM00862 Transcriptional regulatory protein, C terminal RY45_21180 SM00382 ATPases associated with a variety of cellular activities RY45_21180 SM00448 cheY-homologous receiver domain RY45_21190 SM00387 Histidine kinase-like ATPases RY45_21190 SM00388 His Kinase A (phosphoacceptor) domain RY45_21205 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_21215 SM00062 Bacterial periplasmic substrate-binding proteins RY45_21220 SM00344 helix_turn_helix ASNC type RY45_21230 SM00849 Metallo-beta-lactamase superfamily RY45_21235 SM00382 ATPases associated with a variety of cellular activities RY45_21235 SM01086 C-terminal, D2-small domain, of ClpB protein RY45_21245 SM00363 S4 RNA-binding domain RY45_21280 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RY45_21280 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RY45_21290 SM00342 helix_turn_helix, arabinose operon control protein RY45_21300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_21300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_21365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_21365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_21375 SM00382 ATPases associated with a variety of cellular activities RY45_21385 SM01038 Beta galactosidase small chain RY45_21390 SM00354 helix_turn _helix lactose operon repressor RY45_21435 SM00464 Found in ATP-dependent protease La (LON) RY45_21440 SM00836 DALR anticodon binding domain RY45_21440 SM01016 Arginyl tRNA synthetase N terminal dom RY45_21455 SM00382 ATPases associated with a variety of cellular activities RY45_21455 SM01086 C-terminal, D2-small domain, of ClpB protein RY45_21490 SM00924 MgtE intracellular N domain RY45_21495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_21495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_21495 SM01358 RY45_21495 RY45_21525 SM00341 Helicase and RNase D C-terminal RY45_21525 SM00487 DEAD-like helicases superfamily RY45_21525 SM00490 helicase superfamily c-terminal domain RY45_21525 SM00956 RY45_21525 RY45_21560 SM00382 ATPases associated with a variety of cellular activities RY45_21580 SM01230 RY45_21580 RY45_21625 SM00642 Alpha-amylase domain RY45_21675 SM00822 RY45_21675 RY45_21700 SM00858 RY45_21700 RY45_21760 SM00448 cheY-homologous receiver domain RY45_21760 SM00862 Transcriptional regulatory protein, C terminal RY45_21765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_21765 SM00387 Histidine kinase-like ATPases RY45_21765 SM00388 His Kinase A (phosphoacceptor) domain RY45_21775 SM00919 Malic enzyme, NAD binding domain RY45_21775 SM01274 RY45_21775 RY45_21790 SM00487 DEAD-like helicases superfamily RY45_21790 SM00490 helicase superfamily c-terminal domain RY45_21840 SM00382 ATPases associated with a variety of cellular activities RY45_21845 SM00563 Phosphate acyltransferases RY45_21850 SM00563 Phosphate acyltransferases RY45_21875 SM00062 Bacterial periplasmic substrate-binding proteins RY45_21880 SM00382 ATPases associated with a variety of cellular activities RY45_21910 SM00267 diguanylate cyclase RY45_21915 SM00422 helix_turn_helix, mercury resistance RY45_21985 SM00829 Enoylreductase RY45_21995 SM00052 Putative diguanylate phosphodiesterase RY45_21995 SM00267 diguanylate cyclase RY45_22080 SM00421 helix_turn_helix, Lux Regulon RY45_22090 SM00420 helix_turn_helix, Deoxyribose operon repressor RY45_22090 SM01134 RY45_22090 RY45_22095 SM00448 cheY-homologous receiver domain RY45_22095 SM00862 Transcriptional regulatory protein, C terminal RY45_22100 SM00387 Histidine kinase-like ATPases RY45_22100 SM00388 His Kinase A (phosphoacceptor) domain RY45_22125 SM00382 ATPases associated with a variety of cellular activities RY45_22165 SM00470 ParB-like nuclease domain RY45_22180 SM01228 RY45_22180 RY45_22195 SM00382 ATPases associated with a variety of cellular activities RY45_22200 SM00382 ATPases associated with a variety of cellular activities RY45_22235 SM00382 ATPases associated with a variety of cellular activities RY45_22245 SM00062 Bacterial periplasmic substrate-binding proteins RY45_22300 SM00942 Primase C terminal 1 (PriCT-1)