RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 SUPERFAMILY SSF46548 413 541 3.35E-16 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 SUPERFAMILY SSF51971 124 360 1.18E-52 T 14-10-2018 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 SUPERFAMILY SSF46548 33 134 6.8E-22 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 Gene3D G3DSA:1.10.1060.10 22 122 5.4E-23 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 524 535 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 Pfam PF00037 4Fe-4S binding domain 517 540 1.6E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 127 146 2.5E-18 T 14-10-2018 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 379 401 2.5E-18 T 14-10-2018 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 278 2.5E-18 T 14-10-2018 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 351 367 2.5E-18 T 14-10-2018 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 Gene3D G3DSA:3.30.70.20 489 548 5.0E-8 T 14-10-2018 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 125 413 4.4E-31 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 Gene3D G3DSA:3.50.50.60 123 247 4.1E-29 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 Gene3D G3DSA:3.50.50.60 256 443 1.5E-23 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 256 280 1.9E-12 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 126 148 1.9E-12 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 389 407 1.9E-12 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_08150 9f68ab9f010542eeb88d959b8d10f7c8 548 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 34 112 4.0E-17 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 RY45_20695 bdb2646e3403c6cd57679596a5f1af23 90 Pfam PF11656 YjbD family (DUF3811) 2 90 5.0E-28 T 14-10-2018 IPR020317 Uncharacterised protein family YjbD RY45_20695 bdb2646e3403c6cd57679596a5f1af23 90 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 1 85 0.004 T 14-10-2018 IPR020317 Uncharacterised protein family YjbD RY45_15845 296f3801496c3d9c0a3f6a0770ccfec9 285 Gene3D G3DSA:3.10.20.10 35 117 7.3E-11 T 14-10-2018 RY45_15845 296f3801496c3d9c0a3f6a0770ccfec9 285 SUPERFAMILY SSF53927 15 265 6.02E-72 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_15845 296f3801496c3d9c0a3f6a0770ccfec9 285 Pfam PF02634 FdhD/NarQ family 34 265 1.4E-74 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_15845 296f3801496c3d9c0a3f6a0770ccfec9 285 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 9 266 27.053 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_15845 296f3801496c3d9c0a3f6a0770ccfec9 285 Gene3D G3DSA:3.40.140.10 122 271 2.4E-41 T 14-10-2018 RY45_15845 296f3801496c3d9c0a3f6a0770ccfec9 285 PIRSF PIRSF015626 2 270 1.6E-89 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_08515 313f608cd5c0fe3b40128c957f11fac2 154 Hamap MF_00042 Ribonuclease H [rnhA]. 2 150 36.535 T 14-10-2018 IPR022892 Ribonuclease HI GO:0004523 RY45_08515 313f608cd5c0fe3b40128c957f11fac2 154 SUPERFAMILY SSF53098 5 143 1.26E-57 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_08515 313f608cd5c0fe3b40128c957f11fac2 154 Pfam PF00075 RNase H 4 141 6.2E-50 T 14-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RY45_08515 313f608cd5c0fe3b40128c957f11fac2 154 Gene3D G3DSA:3.30.420.10 2 150 8.6E-58 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 357 512 1.2E-34 T 14-10-2018 IPR000160 GGDEF domain RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 Gene3D G3DSA:3.30.70.270 346 512 2.0E-44 T 14-10-2018 RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 SUPERFAMILY SSF103190 125 189 1.39E-7 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 Gene3D G3DSA:3.30.450.20 191 278 1.3E-29 T 14-10-2018 RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 Gene3D G3DSA:3.30.450.20 110 190 1.3E-29 T 14-10-2018 RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 SUPERFAMILY SSF55073 364 512 1.1E-39 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 SMART SM00267 348 513 7.3E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 Pfam PF00990 Diguanylate cyclase, GGDEF domain 359 509 3.4E-32 T 14-10-2018 IPR000160 GGDEF domain RY45_20845 21ccfdea6c8ec01a0e1a2bd60654bd0e 536 Pfam PF02743 Cache domain 50 270 4.0E-23 T 14-10-2018 IPR033479 Double Cache domain 1 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 Gene3D G3DSA:3.40.50.10860 55 190 2.5E-165 T 14-10-2018 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 3.6E-50 T 14-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 PIRSF PIRSF000185 22 448 1.9E-112 T 14-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 14-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 Gene3D G3DSA:1.10.285.10 10 384 2.5E-165 T 14-10-2018 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 SUPERFAMILY SSF53223 10 196 7.04E-72 T 14-10-2018 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 Gene3D G3DSA:1.10.285.10 396 448 6.4E-9 T 14-10-2018 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 SMART SM00839 204 446 8.5E-96 T 14-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 446 1.5E-85 T 14-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 Gene3D G3DSA:3.40.50.720 209 373 2.5E-165 T 14-10-2018 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 SUPERFAMILY SSF51735 202 447 3.86E-75 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 1.6E-32 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 1.6E-32 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 1.6E-32 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RY45_08920 e86530f07c58da7a8ef0dee6e845741c 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 1.6E-32 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RY45_04725 05e4bd03eaf170f053c39d543098aed6 381 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 370 8.4E-129 T 14-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 RY45_04725 05e4bd03eaf170f053c39d543098aed6 381 SMART SM00729 6 223 1.9E-51 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_04725 05e4bd03eaf170f053c39d543098aed6 381 Pfam PF06969 HemN C-terminal domain 307 367 2.5E-9 T 14-10-2018 IPR010723 HemN, C-terminal RY45_04725 05e4bd03eaf170f053c39d543098aed6 381 SUPERFAMILY SSF102114 5 379 2.65E-108 T 14-10-2018 RY45_04725 05e4bd03eaf170f053c39d543098aed6 381 Gene3D G3DSA:3.80.30.20 2 292 4.7E-99 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RY45_04725 05e4bd03eaf170f053c39d543098aed6 381 Pfam PF04055 Radical SAM superfamily 11 178 2.0E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 Pfam PF03466 LysR substrate binding domain 90 287 1.7E-45 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.5E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.5E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.5E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 SUPERFAMILY SSF53850 92 287 3.41E-45 T 14-10-2018 RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 Gene3D G3DSA:1.10.10.10 4 91 6.4E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 Gene3D G3DSA:3.40.190.290 93 286 6.8E-59 T 14-10-2018 RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.7E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_17280 e4038e2fca6c1ea25fc7a24eeb4124e4 290 SUPERFAMILY SSF46785 5 87 1.2E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_12800 f8cbcc353679f70fd17ceae7d8dfd58d 315 SUPERFAMILY SSF144083 250 313 2.88E-20 T 14-10-2018 RY45_12800 f8cbcc353679f70fd17ceae7d8dfd58d 315 SUPERFAMILY SSF143865 1 254 1.05E-27 T 14-10-2018 RY45_12800 f8cbcc353679f70fd17ceae7d8dfd58d 315 Gene3D G3DSA:1.20.58.340 239 315 8.2E-26 T 14-10-2018 RY45_12800 f8cbcc353679f70fd17ceae7d8dfd58d 315 Pfam PF01544 CorA-like Mg2+ transporter protein 26 311 4.3E-57 T 14-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RY45_12800 f8cbcc353679f70fd17ceae7d8dfd58d 315 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 25 315 2.8E-62 T 14-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 Pfam PF13522 Glutamine amidotransferase domain 64 201 3.6E-16 T 14-10-2018 RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 SUPERFAMILY SSF53271 252 484 3.28E-71 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 PIRSF PIRSF000485 1 482 6.4E-166 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 465 45.001 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 SUPERFAMILY SSF56235 2 258 6.35E-73 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 Gene3D G3DSA:3.40.50.2020 278 442 3.1E-158 T 14-10-2018 RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 465 5.7E-162 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 Pfam PF00156 Phosphoribosyl transferase domain 280 393 1.6E-8 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RY45_10055 225e1bad314f89eec6d0b05aac09aac9 506 Gene3D G3DSA:3.60.20.10 2 413 3.1E-158 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_20525 a364bb56ee8c8d07a6468786cbd883be 175 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 19 158 3.8E-44 T 14-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 RY45_20525 a364bb56ee8c8d07a6468786cbd883be 175 Gene3D G3DSA:2.60.450.10 19 156 3.9E-37 T 14-10-2018 RY45_20525 a364bb56ee8c8d07a6468786cbd883be 175 Pfam PF03968 OstA-like protein 29 139 6.5E-26 T 14-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal RY45_20525 a364bb56ee8c8d07a6468786cbd883be 175 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 1 159 20.533 T 14-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 RY45_04095 c8993a1fcea8e8fac4675211cb02c194 484 Gene3D G3DSA:3.40.50.410 322 466 4.6E-7 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_04095 c8993a1fcea8e8fac4675211cb02c194 484 SMART SM00327 320 483 1.3E-5 T 14-10-2018 IPR002035 von Willebrand factor, type A RY45_04095 c8993a1fcea8e8fac4675211cb02c194 484 SUPERFAMILY SSF53300 320 456 1.9E-16 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_04095 c8993a1fcea8e8fac4675211cb02c194 484 Pfam PF05762 VWA domain containing CoxE-like protein 318 450 5.2E-11 T 14-10-2018 IPR008912 Uncharacterised protein family CoxE-like RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 SMART SM00228 267 349 7.8E-15 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 SMART SM00228 374 445 6.4E-9 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 Gene3D G3DSA:2.30.42.10 366 453 5.7E-26 T 14-10-2018 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 Gene3D G3DSA:2.40.10.120 38 261 4.0E-85 T 14-10-2018 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 Pfam PF13365 Trypsin-like peptidase domain 93 228 1.2E-30 T 14-10-2018 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 SUPERFAMILY SSF50494 22 276 4.83E-63 T 14-10-2018 IPR009003 Peptidase S1, PA clan RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 Gene3D G3DSA:2.30.42.10 262 365 5.1E-29 T 14-10-2018 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 386 442 3.2E-9 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 Pfam PF13180 PDZ domain 268 358 4.8E-17 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 SUPERFAMILY SSF50156 382 449 6.7E-15 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 40 451 1.5E-158 T 14-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 1.6E-55 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 1.6E-55 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 PRINTS PR00834 HtrA/DegQ protease family signature 307 319 1.6E-55 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 PRINTS PR00834 HtrA/DegQ protease family signature 124 144 1.6E-55 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 PRINTS PR00834 HtrA/DegQ protease family signature 164 188 1.6E-55 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 PRINTS PR00834 HtrA/DegQ protease family signature 103 115 1.6E-55 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20440 78d3e8b08fa380638e1e793e0d3dfe3c 453 SUPERFAMILY SSF50156 266 361 2.13E-23 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 RY45_01945 261a319fc0806c4d56705cdba7ca7aa6 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.5E-55 T 14-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01945 261a319fc0806c4d56705cdba7ca7aa6 129 Gene3D G3DSA:3.30.420.80 1 129 6.9E-58 T 14-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_01945 261a319fc0806c4d56705cdba7ca7aa6 129 PIRSF PIRSF002131 1 129 5.5E-53 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RY45_01945 261a319fc0806c4d56705cdba7ca7aa6 129 Pfam PF00411 Ribosomal protein S11 19 128 1.8E-52 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RY45_01945 261a319fc0806c4d56705cdba7ca7aa6 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.73 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RY45_01945 261a319fc0806c4d56705cdba7ca7aa6 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 14-10-2018 IPR018102 Ribosomal S11, conserved site RY45_01945 261a319fc0806c4d56705cdba7ca7aa6 129 SUPERFAMILY SSF53137 15 129 8.28E-48 T 14-10-2018 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 7 858 0.0 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 404 2.0E-77 T 14-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 171 4.6E-27 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 418 572 1.5E-8 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 653 6.6E-7 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Gene3D G3DSA:3.10.20.590 799 859 7.0E-21 T 14-10-2018 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 4.5E-53 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 4.5E-53 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 4.5E-53 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 4.5E-53 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 4.5E-53 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 4.5E-53 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 4.5E-53 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 SUPERFAMILY SSF50677 226 415 1.04E-56 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 SUPERFAMILY SSF52374 7 667 1.17E-140 T 14-10-2018 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Pfam PF08264 Anticodon-binding domain of tRNA 699 818 1.7E-16 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 SUPERFAMILY SSF47323 662 859 3.55E-35 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Gene3D G3DSA:3.40.50.620 33 566 0.0 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Gene3D G3DSA:1.10.730.10 8 790 0.0 T 14-10-2018 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Gene3D G3DSA:3.10.330.110 567 628 0.0 T 14-10-2018 RY45_16740 220fec1cbb7dea9a3da241b4c367424a 869 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 858 23.247 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RY45_20950 0e4b8cc6b5ac6640c9e555db7931a999 320 SMART SM01126 140 292 1.1E-48 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_20950 0e4b8cc6b5ac6640c9e555db7931a999 320 Pfam PF12762 ISXO2-like transposase domain 142 287 6.9E-14 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_19265 0e4b8cc6b5ac6640c9e555db7931a999 320 SMART SM01126 140 292 1.1E-48 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_19265 0e4b8cc6b5ac6640c9e555db7931a999 320 Pfam PF12762 ISXO2-like transposase domain 142 287 6.9E-14 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_17715 0e4b8cc6b5ac6640c9e555db7931a999 320 SMART SM01126 140 292 1.1E-48 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_17715 0e4b8cc6b5ac6640c9e555db7931a999 320 Pfam PF12762 ISXO2-like transposase domain 142 287 6.9E-14 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_09055 0e4b8cc6b5ac6640c9e555db7931a999 320 SMART SM01126 140 292 1.1E-48 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_09055 0e4b8cc6b5ac6640c9e555db7931a999 320 Pfam PF12762 ISXO2-like transposase domain 142 287 6.9E-14 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_16385 0e4b8cc6b5ac6640c9e555db7931a999 320 SMART SM01126 140 292 1.1E-48 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_16385 0e4b8cc6b5ac6640c9e555db7931a999 320 Pfam PF12762 ISXO2-like transposase domain 142 287 6.9E-14 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_09940 0e4b8cc6b5ac6640c9e555db7931a999 320 SMART SM01126 140 292 1.1E-48 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_09940 0e4b8cc6b5ac6640c9e555db7931a999 320 Pfam PF12762 ISXO2-like transposase domain 142 287 6.9E-14 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_02365 0e4b8cc6b5ac6640c9e555db7931a999 320 SMART SM01126 140 292 1.1E-48 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_02365 0e4b8cc6b5ac6640c9e555db7931a999 320 Pfam PF12762 ISXO2-like transposase domain 142 287 6.9E-14 T 14-10-2018 IPR024445 ISXO2-like transposase domain RY45_16970 be6f0746490244201487189b1e244f10 564 Pfam PF06580 Histidine kinase 373 449 4.4E-26 T 14-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RY45_16970 be6f0746490244201487189b1e244f10 564 Pfam PF07694 5TMR of 5TMR-LYT 30 198 7.4E-58 T 14-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 RY45_16970 be6f0746490244201487189b1e244f10 564 SUPERFAMILY SSF55781 231 357 1.45E-7 T 14-10-2018 RY45_16970 be6f0746490244201487189b1e244f10 564 SUPERFAMILY SSF55874 426 559 7.12E-16 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_16970 be6f0746490244201487189b1e244f10 564 SMART SM00065 213 367 0.002 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_16970 be6f0746490244201487189b1e244f10 564 Gene3D G3DSA:3.30.565.10 424 562 4.8E-16 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_15445 83bda781b2054a9c44b814f69cac6828 166 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 14 134 2.9E-13 T 14-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RY45_15445 83bda781b2054a9c44b814f69cac6828 166 Gene3D G3DSA:3.30.530.20 1 148 9.1E-21 T 14-10-2018 IPR023393 START-like domain superfamily RY45_15445 83bda781b2054a9c44b814f69cac6828 166 SUPERFAMILY SSF55961 5 143 4.58E-22 T 14-10-2018 RY45_06655 d40407d72a67819532309ecd52f2406e 505 SUPERFAMILY SSF53720 13 495 3.8E-158 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_06655 d40407d72a67819532309ecd52f2406e 505 Gene3D G3DSA:3.40.309.10 265 462 1.9E-160 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_06655 d40407d72a67819532309ecd52f2406e 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RY45_06655 d40407d72a67819532309ecd52f2406e 505 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RY45_06655 d40407d72a67819532309ecd52f2406e 505 Gene3D G3DSA:3.40.605.10 35 490 1.9E-160 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_06655 d40407d72a67819532309ecd52f2406e 505 Pfam PF00171 Aldehyde dehydrogenase family 27 492 1.7E-160 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SUPERFAMILY SSF52172 521 652 1.71E-22 T 14-10-2018 IPR011006 CheY-like superfamily RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SUPERFAMILY SSF47384 271 345 1.39E-20 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Gene3D G3DSA:1.20.120.160 804 914 1.2E-19 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Gene3D G3DSA:1.10.287.130 256 342 6.8E-26 T 14-10-2018 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SMART SM00448 668 781 4.5E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SMART SM00448 521 636 4.1E-15 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SUPERFAMILY SSF55874 333 503 7.73E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Pfam PF00512 His Kinase A (phospho-acceptor) domain 279 344 6.6E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SMART SM00388 279 344 7.2E-25 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SUPERFAMILY SSF52172 665 785 8.4E-37 T 14-10-2018 IPR011006 CheY-like superfamily RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SUPERFAMILY SSF47226 764 894 4.45E-17 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Gene3D G3DSA:3.30.565.10 343 507 5.2E-53 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Gene3D G3DSA:3.40.50.2300 665 786 1.6E-39 T 14-10-2018 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Pfam PF00072 Response regulator receiver domain 670 779 2.0E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Pfam PF00072 Response regulator receiver domain 523 636 4.5E-15 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Pfam PF01627 Hpt domain 828 902 4.3E-8 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 458 4.2E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 502 4.2E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 483 4.2E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 444 4.2E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 SMART SM00387 391 505 7.1E-40 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Gene3D G3DSA:3.40.50.2300 517 663 2.0E-22 T 14-10-2018 RY45_10745 7b22bb74a0328234bd1ec1e6bab2bae6 933 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 391 504 9.6E-31 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_04535 4680bff9dce266a11f6b33c0f927a4b7 144 Gene3D G3DSA:3.40.50.510 1 142 9.5E-32 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RY45_04535 4680bff9dce266a11f6b33c0f927a4b7 144 SUPERFAMILY SSF53062 1 126 2.75E-32 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RY45_04535 4680bff9dce266a11f6b33c0f927a4b7 144 Pfam PF03610 PTS system fructose IIA component 3 113 2.9E-26 T 14-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 Gene3D G3DSA:1.10.3810.10 159 362 1.9E-257 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 Pfam PF00905 Penicillin binding protein transpeptidase domain 432 666 5.4E-28 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 PIRSF PIRSF002799 1 773 0.0 T 14-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 Pfam PF00912 Transglycosylase 167 337 2.6E-57 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 Gene3D G3DSA:1.20.5.100 11 54 1.9E-8 T 14-10-2018 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 SUPERFAMILY SSF56601 320 742 5.25E-112 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 26 742 1.0E-291 T 14-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 Gene3D G3DSA:3.30.2060.10 69 158 1.9E-257 T 14-10-2018 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 SUPERFAMILY SSF53955 164 360 1.21E-67 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 Pfam PF14814 Bifunctional transglycosylase second domain 71 155 4.4E-27 T 14-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_18140 11ad4e2ed9a4f9eabc1c41f72f995efd 773 Gene3D G3DSA:3.40.710.10 61 717 1.9E-257 T 14-10-2018 RY45_10530 d4f0232409ff1bd45b493f5c116ed2ee 396 Pfam PF03918 Cytochrome C biogenesis protein 13 135 1.4E-42 T 14-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family RY45_10530 d4f0232409ff1bd45b493f5c116ed2ee 396 Gene3D G3DSA:1.25.40.10 303 394 7.3E-26 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_10530 d4f0232409ff1bd45b493f5c116ed2ee 396 TIGRFAM TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF 8 131 1.5E-56 T 14-10-2018 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF RY45_10530 d4f0232409ff1bd45b493f5c116ed2ee 396 SUPERFAMILY SSF48452 269 375 5.48E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_10530 d4f0232409ff1bd45b493f5c116ed2ee 396 Gene3D G3DSA:1.10.8.640 23 108 3.2E-31 T 14-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily RY45_03720 5ee6b48a09c8a140ac3e0524971c60ef 246 Pfam PF00005 ABC transporter 18 174 1.9E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_03720 5ee6b48a09c8a140ac3e0524971c60ef 246 SMART SM00382 27 222 8.8E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_03720 5ee6b48a09c8a140ac3e0524971c60ef 246 SUPERFAMILY SSF52540 5 239 1.73E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03720 5ee6b48a09c8a140ac3e0524971c60ef 246 Gene3D G3DSA:3.40.50.300 2 246 8.7E-66 T 14-10-2018 RY45_03720 5ee6b48a09c8a140ac3e0524971c60ef 246 PIRSF PIRSF039085 1 246 2.3E-86 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RY45_03720 5ee6b48a09c8a140ac3e0524971c60ef 246 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_16505 5d69fba95169a677c2aea93db7c0256c 299 SUPERFAMILY SSF46785 4 109 5.54E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_16505 5d69fba95169a677c2aea93db7c0256c 299 Pfam PF03466 LysR substrate binding domain 88 291 1.7E-37 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_16505 5d69fba95169a677c2aea93db7c0256c 299 Gene3D G3DSA:1.10.10.10 3 88 1.5E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16505 5d69fba95169a677c2aea93db7c0256c 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.7E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16505 5d69fba95169a677c2aea93db7c0256c 299 Gene3D G3DSA:3.40.190.10 163 262 4.8E-60 T 14-10-2018 RY45_16505 5d69fba95169a677c2aea93db7c0256c 299 Gene3D G3DSA:3.40.190.10 91 289 4.8E-60 T 14-10-2018 RY45_16505 5d69fba95169a677c2aea93db7c0256c 299 SUPERFAMILY SSF53850 90 292 8.14E-41 T 14-10-2018 RY45_20425 d27eec38ef463423a2cdefc784aa8e99 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 3.0E-65 T 14-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_20425 d27eec38ef463423a2cdefc784aa8e99 142 Gene3D G3DSA:3.90.1180.10 1 142 1.6E-63 T 14-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_20425 d27eec38ef463423a2cdefc784aa8e99 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.246 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RY45_20425 d27eec38ef463423a2cdefc784aa8e99 142 Pfam PF00572 Ribosomal protein L13 15 138 2.0E-56 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RY45_20425 d27eec38ef463423a2cdefc784aa8e99 142 PIRSF PIRSF002181 1 142 7.0E-51 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RY45_20425 d27eec38ef463423a2cdefc784aa8e99 142 SUPERFAMILY SSF52161 1 140 1.44E-59 T 14-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_20425 d27eec38ef463423a2cdefc784aa8e99 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 14-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 RY45_02120 cbf10e6ac31fc1b1f5d793f694bb4bb0 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 58 2.1E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_02120 cbf10e6ac31fc1b1f5d793f694bb4bb0 206 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_02120 cbf10e6ac31fc1b1f5d793f694bb4bb0 206 SUPERFAMILY SSF48498 96 188 6.0E-5 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_02120 cbf10e6ac31fc1b1f5d793f694bb4bb0 206 SUPERFAMILY SSF46689 4 77 2.92E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_02120 cbf10e6ac31fc1b1f5d793f694bb4bb0 206 Gene3D G3DSA:1.10.357.10 53 203 1.3E-41 T 14-10-2018 RY45_02120 cbf10e6ac31fc1b1f5d793f694bb4bb0 206 Gene3D G3DSA:1.10.10.60 2 52 3.0E-22 T 14-10-2018 RY45_00400 59b1ec430cd36b89909ef8939490a8ad 210 Pfam PF09684 Phage tail protein (Tail_P2_I) 5 142 3.7E-48 T 14-10-2018 IPR006521 Tail protein I RY45_00400 59b1ec430cd36b89909ef8939490a8ad 210 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 5 142 1.8E-54 T 14-10-2018 IPR006521 Tail protein I RY45_11235 da88b249d26168e758b91f2088fc71a8 146 SUPERFAMILY SSF54364 1 53 9.15E-20 T 14-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RY45_11235 da88b249d26168e758b91f2088fc71a8 146 Gene3D G3DSA:3.10.20.80 1 50 3.4E-22 T 14-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RY45_11235 da88b249d26168e758b91f2088fc71a8 146 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 58 143 1.4E-38 T 14-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 RY45_11235 da88b249d26168e758b91f2088fc71a8 146 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 145 24.843 T 14-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RY45_11235 da88b249d26168e758b91f2088fc71a8 146 SUPERFAMILY SSF55200 57 145 2.09E-35 T 14-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 RY45_11235 da88b249d26168e758b91f2088fc71a8 146 Gene3D G3DSA:3.30.110.10 51 146 1.9E-38 T 14-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 RY45_11235 da88b249d26168e758b91f2088fc71a8 146 ProSitePatterns PS00938 Initiation factor 3 signature. 33 46 - T 14-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 RY45_11235 da88b249d26168e758b91f2088fc71a8 146 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 2 145 4.0E-65 T 14-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RY45_11235 da88b249d26168e758b91f2088fc71a8 146 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 51 2.9E-21 T 14-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RY45_08900 ee454e63bc7a4321067542b6c8692f74 246 SMART SM00507 162 221 7.5E-6 T 14-10-2018 IPR003615 HNH nuclease RY45_08900 ee454e63bc7a4321067542b6c8692f74 246 Pfam PF01844 HNH endonuclease 175 225 1.2E-11 T 14-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 RY45_08900 ee454e63bc7a4321067542b6c8692f74 246 Gene3D G3DSA:3.30.40.60 145 239 1.2E-5 T 14-10-2018 RY45_06710 1e626470e204ea20a7a3913abdcc5cc7 241 Gene3D G3DSA:3.20.20.380 2 241 4.6E-82 T 14-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 RY45_06710 1e626470e204ea20a7a3913abdcc5cc7 241 Pfam PF03932 CutC family 4 201 2.9E-73 T 14-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 RY45_06710 1e626470e204ea20a7a3913abdcc5cc7 241 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 204 28.627 T 14-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 RY45_06710 1e626470e204ea20a7a3913abdcc5cc7 241 SUPERFAMILY SSF110395 4 239 2.35E-69 T 14-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 330 344 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 Gene3D G3DSA:3.90.640.10 236 309 3.3E-109 T 14-10-2018 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 Gene3D G3DSA:3.30.420.40 22 372 3.3E-109 T 14-10-2018 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 SUPERFAMILY SSF100920 383 534 6.15E-48 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 203 216 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 Gene3D G3DSA:2.60.34.10 377 518 1.1E-47 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 615 44.386 T 14-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 Gene3D G3DSA:1.20.1270.10 519 614 2.5E-23 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 SUPERFAMILY SSF53067 198 375 6.14E-49 T 14-10-2018 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 Gene3D G3DSA:3.30.420.40 192 359 3.3E-109 T 14-10-2018 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 358 378 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 20 33 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 464 480 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 150 170 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 70 78 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 48 60 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 209 219 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 383 402 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 PRINTS PR00301 70kDa heat shock protein signature 327 343 6.4E-58 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 SUPERFAMILY SSF100934 502 613 1.73E-31 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 SUPERFAMILY SSF53067 19 194 9.84E-51 T 14-10-2018 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 Pfam PF00012 Hsp70 protein 21 597 1.6E-186 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_09550 bf32c961e029b01ff3ad2f604715ce57 615 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 613 8.3E-266 T 14-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RY45_16480 0d3060873c6165709fccb608c06b023d 829 Gene3D G3DSA:3.40.710.10 244 357 6.6E-7 T 14-10-2018 RY45_16480 0d3060873c6165709fccb608c06b023d 829 Pfam PF00905 Penicillin binding protein transpeptidase domain 429 599 1.8E-19 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RY45_16480 0d3060873c6165709fccb608c06b023d 829 Gene3D G3DSA:3.40.710.10 403 809 1.7E-95 T 14-10-2018 RY45_16480 0d3060873c6165709fccb608c06b023d 829 Pfam PF17092 Penicillin-binding protein OB-like domain 317 426 8.1E-28 T 14-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_16480 0d3060873c6165709fccb608c06b023d 829 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 754 4.6E-165 T 14-10-2018 RY45_16480 0d3060873c6165709fccb608c06b023d 829 Pfam PF00912 Transglycosylase 56 230 2.5E-62 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_16480 0d3060873c6165709fccb608c06b023d 829 SUPERFAMILY SSF56601 212 804 4.08E-114 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_16480 0d3060873c6165709fccb608c06b023d 829 Gene3D G3DSA:1.10.3810.10 49 243 1.3E-77 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_16480 0d3060873c6165709fccb608c06b023d 829 SUPERFAMILY SSF53955 44 258 1.83E-79 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_09345 1587f73eb469d81ef889230398df7853 267 SUPERFAMILY SSF56655 1 262 4.97E-86 T 14-10-2018 RY45_09345 1587f73eb469d81ef889230398df7853 267 Pfam PF00459 Inositol monophosphatase family 2 260 4.6E-72 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_09345 1587f73eb469d81ef889230398df7853 267 Gene3D G3DSA:3.30.540.10 1 140 8.4E-52 T 14-10-2018 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 7.1E-37 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 7.1E-37 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 7.1E-37 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 7.1E-37 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 4.0E-60 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 4.0E-60 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 4.0E-60 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 4.0E-60 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 4.0E-60 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_09345 1587f73eb469d81ef889230398df7853 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 4.0E-60 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_09345 1587f73eb469d81ef889230398df7853 267 Gene3D G3DSA:3.40.190.80 142 267 3.6E-38 T 14-10-2018 RY45_09345 1587f73eb469d81ef889230398df7853 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 14-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RY45_09430 4bbf6565e3c094b73fbfdfcb5c2b9330 143 SUPERFAMILY SSF52833 6 139 4.74E-39 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_09430 4bbf6565e3c094b73fbfdfcb5c2b9330 143 Gene3D G3DSA:3.40.30.10 3 143 9.9E-59 T 14-10-2018 RY45_09430 4bbf6565e3c094b73fbfdfcb5c2b9330 143 Pfam PF03960 ArsC family 9 117 2.3E-17 T 14-10-2018 IPR006660 Arsenate reductase-like RY45_09430 4bbf6565e3c094b73fbfdfcb5c2b9330 143 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 6 118 1.2E-39 T 14-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 RY45_22010 bda886d13cfbd9d86ce1c48855aae1b0 145 SUPERFAMILY SSF82649 7 143 6.8E-44 T 14-10-2018 RY45_22010 bda886d13cfbd9d86ce1c48855aae1b0 145 Gene3D G3DSA:3.90.1010.10 2 145 5.8E-45 T 14-10-2018 RY45_22010 bda886d13cfbd9d86ce1c48855aae1b0 145 Pfam PF02657 Fe-S metabolism associated domain 21 141 6.4E-41 T 14-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like RY45_21285 39dd18253ce88c1fd639e95eb9ea9294 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_21285 39dd18253ce88c1fd639e95eb9ea9294 387 Gene3D G3DSA:1.20.1090.10 185 387 4.1E-44 T 14-10-2018 RY45_21285 39dd18253ce88c1fd639e95eb9ea9294 387 SUPERFAMILY SSF56796 1 384 4.06E-105 T 14-10-2018 RY45_21285 39dd18253ce88c1fd639e95eb9ea9294 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 359 2.8E-89 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RY45_21285 39dd18253ce88c1fd639e95eb9ea9294 387 Gene3D G3DSA:3.40.50.1970 1 184 4.2E-49 T 14-10-2018 RY45_21285 39dd18253ce88c1fd639e95eb9ea9294 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 2.5E-27 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 2.5E-27 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 2.5E-27 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 2.5E-27 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 Gene3D G3DSA:1.10.240.10 186 298 5.8E-144 T 14-10-2018 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 331 42.781 T 14-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 Pfam PF00579 tRNA synthetases class I (W and Y) 3 285 5.7E-85 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 8.5E-118 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 Gene3D G3DSA:3.40.50.620 6 329 5.8E-144 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_16420 87ca7213e0b46de08cc8310a21bc63ab 334 SUPERFAMILY SSF52374 5 330 2.34E-101 T 14-10-2018 RY45_02030 5ad13de3e5e0f3ae986e6d6651c31df9 143 Pfam PF04214 Protein of unknown function, DUF 49 117 2.3E-32 T 14-10-2018 IPR007332 Protein of unknown function DUF411 RY45_02030 5ad13de3e5e0f3ae986e6d6651c31df9 143 SUPERFAMILY SSF52833 23 98 1.52E-6 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_11445 706b38adfc0e653cac94a7ea2ece83a9 76 SUPERFAMILY SSF52833 1 74 2.67E-15 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_11445 706b38adfc0e653cac94a7ea2ece83a9 76 Pfam PF05768 Glutaredoxin-like domain (DUF836) 2 72 2.7E-14 T 14-10-2018 IPR008554 Glutaredoxin-like RY45_11445 706b38adfc0e653cac94a7ea2ece83a9 76 Gene3D G3DSA:3.40.30.10 1 76 3.2E-22 T 14-10-2018 RY45_10595 ed5c739e025dc707193cc3a359c27273 403 Gene3D G3DSA:3.30.420.40 204 371 1.9E-66 T 14-10-2018 RY45_10595 ed5c739e025dc707193cc3a359c27273 403 SUPERFAMILY SSF46785 11 75 7.42E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10595 ed5c739e025dc707193cc3a359c27273 403 SUPERFAMILY SSF53067 85 374 7.89E-41 T 14-10-2018 RY45_10595 ed5c739e025dc707193cc3a359c27273 403 Pfam PF00480 ROK family 87 357 1.3E-41 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RY45_10595 ed5c739e025dc707193cc3a359c27273 403 Gene3D G3DSA:1.10.10.10 3 80 1.9E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10595 ed5c739e025dc707193cc3a359c27273 403 Gene3D G3DSA:3.30.420.40 89 374 1.9E-66 T 14-10-2018 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 397 412 9.7E-38 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 283 303 9.7E-38 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 199 216 9.7E-38 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 363 382 9.7E-38 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 488 507 9.7E-38 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 Gene3D G3DSA:3.30.1370.120 111 181 1.1E-15 T 14-10-2018 IPR038591 NolW-like superfamily RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 455 488 - T 14-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 Gene3D G3DSA:3.55.50.30 27 110 2.7E-28 T 14-10-2018 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 39 510 3.8E-174 T 14-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 Pfam PF03958 Bacterial type II/III secretion system short domain 188 280 6.2E-18 T 14-10-2018 IPR005644 NolW-like RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 Pfam PF00263 Bacterial type II and III secretion system protein 350 510 7.2E-41 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 RY45_13900 6a5485b55105a23efb0c7392b7d979d9 609 Gene3D G3DSA:3.30.1370.120 186 281 9.3E-11 T 14-10-2018 IPR038591 NolW-like superfamily RY45_00085 754419e3d4362d2cf52cde7f1853fc96 560 PIRSF PIRSF001294 1 557 1.2E-220 T 14-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RY45_00085 754419e3d4362d2cf52cde7f1853fc96 560 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 9 555 9.1E-206 T 14-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RY45_00085 754419e3d4362d2cf52cde7f1853fc96 560 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 555 31.894 T 14-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RY45_00085 754419e3d4362d2cf52cde7f1853fc96 560 Pfam PF03814 Potassium-transporting ATPase A subunit 10 553 3.3E-220 T 14-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RY45_07045 34301ffe87a5b34d5390ccbb6d882329 762 Gene3D G3DSA:3.40.50.740 117 576 2.4E-74 T 14-10-2018 RY45_07045 34301ffe87a5b34d5390ccbb6d882329 762 SUPERFAMILY SSF53706 44 618 6.54E-146 T 14-10-2018 RY45_07045 34301ffe87a5b34d5390ccbb6d882329 762 Gene3D G3DSA:3.40.228.10 181 400 2.4E-74 T 14-10-2018 RY45_07045 34301ffe87a5b34d5390ccbb6d882329 762 Pfam PF00384 Molybdopterin oxidoreductase 105 476 1.0E-25 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_07045 34301ffe87a5b34d5390ccbb6d882329 762 SUPERFAMILY SSF50692 635 754 2.26E-17 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RY45_07045 34301ffe87a5b34d5390ccbb6d882329 762 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 10 752 1.3E-277 T 14-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 RY45_07045 34301ffe87a5b34d5390ccbb6d882329 762 PIRSF PIRSF000144 2 757 0.0 T 14-10-2018 RY45_07045 34301ffe87a5b34d5390ccbb6d882329 762 Pfam PF01568 Molydopterin dinucleotide binding domain 639 728 4.5E-10 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RY45_04030 29c065b1b3010b72ce6d72ceb54d7fa9 246 SUPERFAMILY SSF52343 102 246 2.88E-32 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_04030 29c065b1b3010b72ce6d72ceb54d7fa9 246 Gene3D G3DSA:2.40.30.10 1 95 5.9E-25 T 14-10-2018 RY45_04030 29c065b1b3010b72ce6d72ceb54d7fa9 246 Gene3D G3DSA:3.40.50.80 96 246 1.7E-38 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_04030 29c065b1b3010b72ce6d72ceb54d7fa9 246 SUPERFAMILY SSF63380 2 93 3.58E-20 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_04030 29c065b1b3010b72ce6d72ceb54d7fa9 246 Pfam PF00175 Oxidoreductase NAD-binding domain 110 221 1.1E-13 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RY45_19340 4e0889dd474032518d700651ec01fa1c 136 Gene3D G3DSA:3.40.1440.10 13 119 4.4E-26 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RY45_19340 4e0889dd474032518d700651ec01fa1c 136 Hamap MF_01029 UPF0213 protein YhbQ [yhbQ]. 16 122 31.61 T 14-10-2018 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease RY45_19340 4e0889dd474032518d700651ec01fa1c 136 Pfam PF01541 GIY-YIG catalytic domain 18 89 6.0E-12 T 14-10-2018 IPR000305 GIY-YIG endonuclease RY45_19340 4e0889dd474032518d700651ec01fa1c 136 SUPERFAMILY SSF82771 18 89 1.83E-10 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Pfam PF01627 Hpt domain 1106 1166 5.0E-9 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_00310 83683a5606ad418cc407b636208167c8 1195 SUPERFAMILY SSF52172 951 1079 8.68E-35 T 14-10-2018 IPR011006 CheY-like superfamily RY45_00310 83683a5606ad418cc407b636208167c8 1195 SMART SM00388 705 771 7.2E-21 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:3.30.450.20 557 694 9.4E-9 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:3.30.565.10 772 934 2.4E-42 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00310 83683a5606ad418cc407b636208167c8 1195 SMART SM00387 816 931 1.6E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00310 83683a5606ad418cc407b636208167c8 1195 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 822 929 4.0E-24 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00310 83683a5606ad418cc407b636208167c8 1195 SMART SM00062 58 273 5.2E-11 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_00310 83683a5606ad418cc407b636208167c8 1195 SMART SM00062 296 517 7.2E-17 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:3.40.190.10 48 269 2.0E-43 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:3.40.190.10 286 513 2.6E-47 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 66 271 2.5E-16 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_00310 83683a5606ad418cc407b636208167c8 1195 SUPERFAMILY SSF53850 297 514 1.56E-32 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:3.40.190.10 143 232 2.0E-43 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:3.40.190.10 380 476 2.6E-47 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:3.40.50.2300 945 1086 1.8E-34 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 SUPERFAMILY SSF53850 52 272 1.47E-24 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:1.20.120.160 1087 1193 7.4E-11 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_00310 83683a5606ad418cc407b636208167c8 1195 SUPERFAMILY SSF47384 688 772 3.92E-20 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_00310 83683a5606ad418cc407b636208167c8 1195 SMART SM00448 953 1069 2.0E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00310 83683a5606ad418cc407b636208167c8 1195 SUPERFAMILY SSF55785 556 683 1.03E-9 T 14-10-2018 IPR035965 PAS domain superfamily RY45_00310 83683a5606ad418cc407b636208167c8 1195 Pfam PF00072 Response regulator receiver domain 955 1066 1.0E-22 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00310 83683a5606ad418cc407b636208167c8 1195 SUPERFAMILY SSF55874 761 931 9.95E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00310 83683a5606ad418cc407b636208167c8 1195 Gene3D G3DSA:1.10.287.130 695 771 4.3E-24 T 14-10-2018 RY45_00310 83683a5606ad418cc407b636208167c8 1195 SUPERFAMILY SSF47226 1052 1163 4.58E-15 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Pfam PF00512 His Kinase A (phospho-acceptor) domain 705 771 2.1E-17 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_00310 83683a5606ad418cc407b636208167c8 1195 PRINTS PR00344 Bacterial sensor protein C-terminal signature 915 928 6.9E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00310 83683a5606ad418cc407b636208167c8 1195 PRINTS PR00344 Bacterial sensor protein C-terminal signature 891 909 6.9E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00310 83683a5606ad418cc407b636208167c8 1195 PRINTS PR00344 Bacterial sensor protein C-terminal signature 874 884 6.9E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00310 83683a5606ad418cc407b636208167c8 1195 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 870 6.9E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00310 83683a5606ad418cc407b636208167c8 1195 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 297 513 4.8E-24 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_07420 0bfb25f38746243486ba891c4993ac75 539 Pfam PF13302 Acetyltransferase (GNAT) domain 145 281 1.4E-23 T 14-10-2018 IPR000182 GNAT domain RY45_07420 0bfb25f38746243486ba891c4993ac75 539 SUPERFAMILY SSF55729 142 287 8.82E-28 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_07420 0bfb25f38746243486ba891c4993ac75 539 Gene3D G3DSA:3.40.630.30 136 307 2.4E-27 T 14-10-2018 RY45_14975 202c26c97224063be3152f997b05677e 217 Pfam PF04337 Protein of unknown function, DUF480 6 156 7.4E-62 T 14-10-2018 IPR007432 Protein of unknown function DUF480 RY45_14975 202c26c97224063be3152f997b05677e 217 Gene3D G3DSA:1.10.10.10 95 173 2.4E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_14975 202c26c97224063be3152f997b05677e 217 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 217 35.193 T 14-10-2018 IPR007432 Protein of unknown function DUF480 RY45_14975 202c26c97224063be3152f997b05677e 217 Gene3D G3DSA:1.10.10.10 1 89 7.2E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_14975 202c26c97224063be3152f997b05677e 217 SUPERFAMILY SSF46785 90 172 8.85E-31 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_14975 202c26c97224063be3152f997b05677e 217 SUPERFAMILY SSF46785 3 84 9.25E-30 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_02990 0ec035351722c7774556e625fda6bd93 577 SUPERFAMILY SSF53850 117 556 3.08E-62 T 14-10-2018 RY45_02990 0ec035351722c7774556e625fda6bd93 577 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 119 2.7E-36 T 14-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain RY45_02990 0ec035351722c7774556e625fda6bd93 577 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 165 313 5.4E-19 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_02990 0ec035351722c7774556e625fda6bd93 577 Gene3D G3DSA:3.40.190.10 114 319 1.3E-32 T 14-10-2018 RY45_20465 b6c0a84a4a4c4b90a70ad814cfc5aca6 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 237 7.8E-120 T 14-10-2018 IPR020042 Protein of unknown function DUF4311 RY45_20465 b6c0a84a4a4c4b90a70ad814cfc5aca6 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 2.4E-149 T 14-10-2018 IPR020042 Protein of unknown function DUF4311 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 PIRSF PIRSF000854 1 792 0.0 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 7 789 0.0 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 482 784 8.1E-60 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 384 455 1.7E-26 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 Gene3D G3DSA:3.30.1490.20 2 193 2.0E-70 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 694 712 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 Gene3D G3DSA:3.50.30.10 360 477 1.2E-40 T 14-10-2018 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 SUPERFAMILY SSF56059 2 385 3.53E-109 T 14-10-2018 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 Gene3D G3DSA:3.30.470.20 194 357 2.9E-59 T 14-10-2018 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 414 425 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 SUPERFAMILY SSF52009 349 466 3.53E-34 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 19 344 2.9E-113 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 Gene3D G3DSA:3.20.20.60 478 790 3.3E-103 T 14-10-2018 RY45_14145 6d5e250a01deee7931c6c0ee84557bd8 792 SUPERFAMILY SSF51621 462 789 4.19E-98 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 Pfam PF13180 PDZ domain 264 354 3.3E-15 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 Gene3D G3DSA:2.40.10.10 40 144 2.9E-30 T 14-10-2018 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 Gene3D G3DSA:2.30.42.10 265 364 4.2E-24 T 14-10-2018 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 8 358 7.3E-144 T 14-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 SUPERFAMILY SSF50494 23 273 4.4E-58 T 14-10-2018 IPR009003 Peptidase S1, PA clan RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 SUPERFAMILY SSF50156 247 354 1.84E-22 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 SMART SM00228 264 346 5.1E-12 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 Pfam PF13365 Trypsin-like peptidase domain 84 223 5.3E-30 T 14-10-2018 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 Gene3D G3DSA:2.40.10.10 150 264 4.7E-36 T 14-10-2018 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 PRINTS PR00834 HtrA/DegQ protease family signature 154 178 3.7E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 PRINTS PR00834 HtrA/DegQ protease family signature 93 105 3.7E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 PRINTS PR00834 HtrA/DegQ protease family signature 304 316 3.7E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 PRINTS PR00834 HtrA/DegQ protease family signature 194 211 3.7E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 PRINTS PR00834 HtrA/DegQ protease family signature 216 233 3.7E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_20445 c52b5a057d67a59dc28dc660fbd618f8 373 PRINTS PR00834 HtrA/DegQ protease family signature 114 134 3.7E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 Pfam PF13426 PAS domain 281 378 1.9E-11 T 14-10-2018 IPR000014 PAS domain RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 272 385 1.9E-12 T 14-10-2018 IPR000014 PAS domain RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 Pfam PF00990 Diguanylate cyclase, GGDEF domain 390 551 9.1E-49 T 14-10-2018 IPR000160 GGDEF domain RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 SUPERFAMILY SSF55781 139 271 7.85E-8 T 14-10-2018 RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 SUPERFAMILY SSF141868 572 819 6.8E-89 T 14-10-2018 IPR035919 EAL domain superfamily RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 387 553 1.2E-41 T 14-10-2018 IPR000160 GGDEF domain RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 SMART SM00052 566 812 2.6E-114 T 14-10-2018 IPR001633 EAL domain RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 Gene3D G3DSA:3.30.450.20 267 387 4.6E-20 T 14-10-2018 RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 SUPERFAMILY SSF55073 395 557 2.12E-48 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 SUPERFAMILY SSF55785 281 387 2.26E-18 T 14-10-2018 IPR035965 PAS domain superfamily RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 Pfam PF00563 EAL domain 572 807 1.1E-72 T 14-10-2018 IPR001633 EAL domain RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 Gene3D G3DSA:3.20.20.450 570 819 8.4E-101 T 14-10-2018 IPR035919 EAL domain superfamily RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 SMART SM00267 379 556 1.3E-63 T 14-10-2018 IPR000160 GGDEF domain RY45_08465 75ac02cdd70d9a05c150dee63a07cfce 838 Gene3D G3DSA:3.30.70.270 388 569 1.4E-61 T 14-10-2018 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 149 367 1.9E-60 T 14-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 102 9.1E-19 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 SUPERFAMILY SSF53927 6 147 1.15E-46 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 PIRSF PIRSF006769 1 369 1.1E-121 T 14-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 Gene3D G3DSA:3.40.140.10 2 143 6.9E-45 T 14-10-2018 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 10 364 7.0E-126 T 14-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 Pfam PF01872 RibD C-terminal domain 150 362 7.4E-51 T 14-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 SUPERFAMILY SSF53597 149 365 1.81E-56 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 Gene3D G3DSA:3.40.430.10 144 368 2.3E-72 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RY45_17185 07c77510008685cd43cb6416d3e28b0c 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 91 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RY45_05405 dd0be9dd4415a99497b9721b82541e83 266 Pfam PF08241 Methyltransferase domain 88 152 3.6E-5 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RY45_05405 dd0be9dd4415a99497b9721b82541e83 266 Gene3D G3DSA:3.40.50.150 1 266 7.6E-41 T 14-10-2018 RY45_05405 dd0be9dd4415a99497b9721b82541e83 266 PIRSF PIRSF018249 1 265 2.5E-45 T 14-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 RY45_05405 dd0be9dd4415a99497b9721b82541e83 266 SUPERFAMILY SSF53335 4 248 2.55E-22 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 Gene3D G3DSA:3.30.1390.10 51 121 2.1E-31 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 2.4E-30 T 14-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 Gene3D G3DSA:1.20.5.710 2 50 4.3E-24 T 14-10-2018 RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 25.552 T 14-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 SUPERFAMILY SSF48300 3 57 1.02E-16 T 14-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 SUPERFAMILY SSF54736 50 121 2.09E-24 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 121 5.0E-18 T 14-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 7.4E-47 T 14-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_21050 1d87c1f4bb05b38ec19ea849f1922374 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 48 2.6E-15 T 14-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_07750 bedd19f586bf2158c1c5a1783eb146b4 194 SUPERFAMILY SSF47413 2 59 1.24E-10 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_07750 bedd19f586bf2158c1c5a1783eb146b4 194 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 1 50 6.9E-8 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_07750 bedd19f586bf2158c1c5a1783eb146b4 194 SUPERFAMILY SSF51306 100 189 1.2E-6 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RY45_07750 bedd19f586bf2158c1c5a1783eb146b4 194 Gene3D G3DSA:1.10.260.40 1 62 2.4E-11 T 14-10-2018 RY45_03880 b0195920e74c92737af5dcc3feb6e8ac 150 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 7 141 7.0E-12 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RY45_03880 b0195920e74c92737af5dcc3feb6e8ac 150 SUPERFAMILY SSF54534 5 143 9.43E-32 T 14-10-2018 RY45_03880 b0195920e74c92737af5dcc3feb6e8ac 150 Gene3D G3DSA:3.10.50.40 14 141 8.1E-40 T 14-10-2018 RY45_03880 b0195920e74c92737af5dcc3feb6e8ac 150 Gene3D G3DSA:2.40.10.330 73 129 8.1E-40 T 14-10-2018 RY45_07160 42090fb5530ee1d2059d3f9a3dc7f725 322 TIGRFAM TIGR00749 glk: glucokinase 7 311 3.7E-131 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RY45_07160 42090fb5530ee1d2059d3f9a3dc7f725 322 Pfam PF02685 Glucokinase 7 316 4.0E-120 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RY45_07160 42090fb5530ee1d2059d3f9a3dc7f725 322 Gene3D G3DSA:3.30.420.40 7 309 3.1E-115 T 14-10-2018 RY45_07160 42090fb5530ee1d2059d3f9a3dc7f725 322 SUPERFAMILY SSF53067 6 317 1.14E-63 T 14-10-2018 RY45_07160 42090fb5530ee1d2059d3f9a3dc7f725 322 Gene3D G3DSA:3.40.367.20 101 300 3.1E-115 T 14-10-2018 RY45_07160 42090fb5530ee1d2059d3f9a3dc7f725 322 Hamap MF_00524 Glucokinase [glk]. 5 317 34.976 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RY45_06270 a63ff3993c73f9463a9bc66555122591 476 SUPERFAMILY SSF55604 401 469 2.09E-19 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_06270 a63ff3993c73f9463a9bc66555122591 476 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 413 430 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_06270 a63ff3993c73f9463a9bc66555122591 476 Pfam PF00367 phosphotransferase system, EIIB 404 435 1.5E-13 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_06270 a63ff3993c73f9463a9bc66555122591 476 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 473 1.7E-197 T 14-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 RY45_06270 a63ff3993c73f9463a9bc66555122591 476 Gene3D G3DSA:3.30.1360.60 395 476 6.9E-29 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_06270 a63ff3993c73f9463a9bc66555122591 476 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 376 459 1.5E-23 T 14-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RY45_06270 a63ff3993c73f9463a9bc66555122591 476 Pfam PF02378 Phosphotransferase system, EIIC 13 318 1.8E-72 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 486 4.8E-126 T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 347 354 - T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 Gene3D G3DSA:3.40.220.10 1 159 7.6E-60 T 14-10-2018 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 SUPERFAMILY SSF52949 1 184 2.18E-52 T 14-10-2018 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 Gene3D G3DSA:3.40.630.10 181 495 1.8E-140 T 14-10-2018 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 PRINTS PR00481 Cytosol aminopeptidase signature 262 279 1.9E-56 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 PRINTS PR00481 Cytosol aminopeptidase signature 284 305 1.9E-56 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 PRINTS PR00481 Cytosol aminopeptidase signature 343 363 1.9E-56 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 PRINTS PR00481 Cytosol aminopeptidase signature 321 342 1.9E-56 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 PRINTS PR00481 Cytosol aminopeptidase signature 371 386 1.9E-56 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 SUPERFAMILY SSF53187 179 493 8.16E-126 T 14-10-2018 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 495 41.177 T 14-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RY45_19155 37c1e35c621b807b765c9b89dd71e2fb 502 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 7.2E-34 T 14-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RY45_12180 faba741cdcbf7d00c350e999362effcb 108 PIRSF PIRSF004916 1 107 2.0E-27 T 14-10-2018 IPR007376 dsDNA mimic, putative RY45_12180 faba741cdcbf7d00c350e999362effcb 108 Gene3D G3DSA:3.10.450.140 9 106 2.3E-33 T 14-10-2018 IPR036763 Putative dsDNA mimic superfamily RY45_12180 faba741cdcbf7d00c350e999362effcb 108 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 11 105 1.0E-18 T 14-10-2018 IPR007376 dsDNA mimic, putative RY45_12180 faba741cdcbf7d00c350e999362effcb 108 SUPERFAMILY SSF102816 9 105 1.19E-27 T 14-10-2018 IPR036763 Putative dsDNA mimic superfamily RY45_12180 faba741cdcbf7d00c350e999362effcb 108 Pfam PF04269 Protein of unknown function, DUF440 9 105 7.0E-40 T 14-10-2018 IPR007376 dsDNA mimic, putative RY45_12980 946045342f6b392692a49868b193a111 221 Gene3D G3DSA:3.30.70.20 76 209 4.8E-13 T 14-10-2018 RY45_12980 946045342f6b392692a49868b193a111 221 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 82 93 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_12980 946045342f6b392692a49868b193a111 221 Pfam PF12837 4Fe-4S binding domain 5 24 2.1E-5 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_12980 946045342f6b392692a49868b193a111 221 Pfam PF00037 4Fe-4S binding domain 76 98 5.1E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_12980 946045342f6b392692a49868b193a111 221 Pfam PF12798 4Fe-4S binding domain 151 171 0.083 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_12980 946045342f6b392692a49868b193a111 221 Gene3D G3DSA:3.30.70.20 3 75 7.7E-9 T 14-10-2018 RY45_12980 946045342f6b392692a49868b193a111 221 SUPERFAMILY SSF54862 1 189 2.62E-38 T 14-10-2018 RY45_19320 034c9c29522892649e18d3f28c604284 285 Pfam PF00892 EamA-like transporter family 6 136 6.1E-12 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_19320 034c9c29522892649e18d3f28c604284 285 Pfam PF00892 EamA-like transporter family 143 268 2.5E-7 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_19320 034c9c29522892649e18d3f28c604284 285 SUPERFAMILY SSF103481 40 138 5.62E-15 T 14-10-2018 RY45_19320 034c9c29522892649e18d3f28c604284 285 SUPERFAMILY SSF103481 179 277 7.06E-12 T 14-10-2018 RY45_08700 cde48c0c92767ac94d896cc954a58fa6 442 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 3.3E-141 T 14-10-2018 RY45_08700 cde48c0c92767ac94d896cc954a58fa6 442 Pfam PF07690 Major Facilitator Superfamily 36 396 2.4E-45 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_08700 cde48c0c92767ac94d896cc954a58fa6 442 Gene3D G3DSA:1.20.1250.20 20 223 1.1E-48 T 14-10-2018 RY45_08700 cde48c0c92767ac94d896cc954a58fa6 442 PIRSF PIRSF002808 6 441 1.8E-143 T 14-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RY45_08700 cde48c0c92767ac94d896cc954a58fa6 442 Gene3D G3DSA:1.20.1250.20 238 437 2.2E-43 T 14-10-2018 RY45_08700 cde48c0c92767ac94d896cc954a58fa6 442 SUPERFAMILY SSF103473 16 438 1.7E-76 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_15330 cf973cef2903b6143368a19b09fca313 1065 SUPERFAMILY SSF82866 312 513 1.96E-38 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Gene3D G3DSA:3.30.2090.10 740 830 6.2E-231 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Gene3D G3DSA:3.30.70.1430 581 691 6.2E-231 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 SUPERFAMILY SSF82693 152 345 1.14E-12 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Gene3D G3DSA:3.30.70.1440 692 897 6.2E-231 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 SUPERFAMILY SSF82693 577 690 1.99E-13 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 SUPERFAMILY SSF82866 827 1052 1.27E-40 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 SUPERFAMILY SSF82693 54 148 2.62E-19 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Gene3D G3DSA:3.30.70.1430 54 838 6.2E-231 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Gene3D G3DSA:3.30.70.1320 150 347 6.2E-231 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 2.5E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 PRINTS PR00702 Acriflavin resistance protein family signature 24 48 2.5E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 PRINTS PR00702 Acriflavin resistance protein family signature 407 431 2.5E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 PRINTS PR00702 Acriflavin resistance protein family signature 52 70 2.5E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 PRINTS PR00702 Acriflavin resistance protein family signature 379 400 2.5E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 PRINTS PR00702 Acriflavin resistance protein family signature 486 509 2.5E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Gene3D G3DSA:1.20.1640.10 30 528 6.2E-231 T 14-10-2018 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Pfam PF00873 AcrB/AcrD/AcrF family 27 1048 1.4E-155 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15330 cf973cef2903b6143368a19b09fca313 1065 SUPERFAMILY SSF82714 739 825 2.49E-8 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Gene3D G3DSA:3.30.2090.10 198 289 6.2E-231 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15330 cf973cef2903b6143368a19b09fca313 1065 SUPERFAMILY SSF82714 203 283 1.7E-11 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15330 cf973cef2903b6143368a19b09fca313 1065 Gene3D G3DSA:1.20.1640.10 529 1047 6.2E-231 T 14-10-2018 RY45_05345 fa110ea5ed56410074c4813bb39fee52 185 Gene3D G3DSA:2.30.110.10 8 177 1.1E-55 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RY45_05345 fa110ea5ed56410074c4813bb39fee52 185 PIRSF PIRSF004633 1 175 6.9E-76 T 14-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain RY45_05345 fa110ea5ed56410074c4813bb39fee52 185 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 12 103 6.0E-17 T 14-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RY45_05345 fa110ea5ed56410074c4813bb39fee52 185 TIGRFAM TIGR04110 heme_HutZ: heme utilization protein HutZ 3 169 1.0E-91 T 14-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain RY45_05345 fa110ea5ed56410074c4813bb39fee52 185 SUPERFAMILY SSF50475 8 160 2.62E-36 T 14-10-2018 RY45_15400 d86260689dd04f74daa355d753d46145 146 Pfam PF00582 Universal stress protein family 5 123 9.8E-8 T 14-10-2018 IPR006016 UspA RY45_15400 d86260689dd04f74daa355d753d46145 146 Gene3D G3DSA:3.40.50.620 4 135 1.5E-8 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_15400 d86260689dd04f74daa355d753d46145 146 SUPERFAMILY SSF52402 4 137 3.1E-9 T 14-10-2018 RY45_08380 5a8cd9dc437d8e6ff8d6d8bf4d24db1e 367 Gene3D G3DSA:1.10.530.10 106 359 2.5E-117 T 14-10-2018 RY45_08380 5a8cd9dc437d8e6ff8d6d8bf4d24db1e 367 Gene3D G3DSA:1.10.8.350 67 240 2.5E-117 T 14-10-2018 RY45_08380 5a8cd9dc437d8e6ff8d6d8bf4d24db1e 367 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 69 359 7.5E-117 T 14-10-2018 IPR011757 Lytic transglycosylase MltB RY45_08380 5a8cd9dc437d8e6ff8d6d8bf4d24db1e 367 SUPERFAMILY SSF53955 60 361 7.45E-95 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_08380 5a8cd9dc437d8e6ff8d6d8bf4d24db1e 367 Pfam PF13406 Transglycosylase SLT domain 64 357 7.8E-95 T 14-10-2018 IPR031304 Transglycosylase SLT domain 2 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 Pfam PF13649 Methyltransferase domain 191 264 1.1E-11 T 14-10-2018 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 SUPERFAMILY SSF53335 140 383 5.68E-26 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 Gene3D G3DSA:3.40.50.150 145 392 2.2E-38 T 14-10-2018 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.1E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 2.1E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.1E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 SMART SM00422 1 69 6.8E-18 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 Gene3D G3DSA:1.10.1660.10 1 111 2.0E-22 T 14-10-2018 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 Pfam PF13411 MerR HTH family regulatory protein 1 61 4.6E-15 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_16870 ffd8fa31e442daa9ddc34d18e79ba201 393 SUPERFAMILY SSF46955 1 101 7.69E-22 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_10965 93028fedf16d2e4bdb13eea7822e51ba 258 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 3 256 42.111 T 14-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 RY45_10965 93028fedf16d2e4bdb13eea7822e51ba 258 Gene3D G3DSA:3.40.50.150 10 257 1.4E-68 T 14-10-2018 RY45_10965 93028fedf16d2e4bdb13eea7822e51ba 258 SUPERFAMILY SSF53335 4 256 2.28E-35 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_10965 93028fedf16d2e4bdb13eea7822e51ba 258 Pfam PF13847 Methyltransferase domain 46 149 2.9E-14 T 14-10-2018 IPR025714 Methyltransferase domain RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 506 521 3.6E-32 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 329 343 3.6E-32 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 435 450 3.6E-32 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 360 378 3.6E-32 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 135 150 3.6E-32 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 SMART SM01038 727 998 2.9E-120 T 14-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Gene3D G3DSA:2.70.98.10 733 1003 3.1E-75 T 14-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Gene3D G3DSA:2.60.40.10 209 318 1.6E-22 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 SUPERFAMILY SSF49785 2 207 7.79E-64 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Gene3D G3DSA:3.20.20.80 319 599 3.7E-103 T 14-10-2018 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 SUPERFAMILY SSF49303 210 318 7.81E-22 T 14-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 SUPERFAMILY SSF51445 320 598 1.28E-84 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Pfam PF02929 Beta galactosidase small chain 729 997 1.4E-61 T 14-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 SUPERFAMILY SSF49303 596 702 4.96E-20 T 14-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 SUPERFAMILY SSF74650 713 999 9.89E-80 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 435 449 - T 14-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Pfam PF16353 Domain of unknown function(DUF4981) 615 699 5.5E-14 T 14-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Gene3D G3DSA:2.60.40.10 601 701 1.9E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Gene3D G3DSA:2.60.120.260 1 208 3.8E-76 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 43 207 6.5E-51 T 14-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 370 395 - T 14-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 320 603 6.5E-111 T 14-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RY45_01310 547e3bc4a7cacd581009ce89191b2667 1024 Pfam PF00703 Glycosyl hydrolases family 2 209 318 3.6E-16 T 14-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_14515 5828279d8267a519bd950d8764efc66c 203 SUPERFAMILY SSF46626 24 109 1.38E-11 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_14515 5828279d8267a519bd950d8764efc66c 203 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 32 106 4.4E-5 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_14515 5828279d8267a519bd950d8764efc66c 203 Gene3D G3DSA:1.10.760.10 27 110 2.9E-16 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_14515 5828279d8267a519bd950d8764efc66c 203 Gene3D G3DSA:1.10.760.10 113 203 2.0E-20 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_14515 5828279d8267a519bd950d8764efc66c 203 Pfam PF00034 Cytochrome c 124 201 5.9E-5 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_14515 5828279d8267a519bd950d8764efc66c 203 SUPERFAMILY SSF46626 117 202 1.35E-14 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_14515 5828279d8267a519bd950d8764efc66c 203 PIRSF PIRSF000005 14 203 2.1E-38 T 14-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 SUPERFAMILY SSF46600 621 666 5.23E-12 T 14-10-2018 IPR036876 UVR domain superfamily RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Gene3D G3DSA:3.40.50.300 415 589 7.8E-49 T 14-10-2018 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Gene3D G3DSA:3.40.50.300 276 414 4.2E-51 T 14-10-2018 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Pfam PF02151 UvrB/uvrC motif 632 666 1.6E-9 T 14-10-2018 IPR001943 UVR domain GO:0005515 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 666 43.456 T 14-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Gene3D G3DSA:4.10.860.10 626 670 6.6E-15 T 14-10-2018 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 SUPERFAMILY SSF52540 36 589 1.47E-36 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 SMART SM00490 460 546 7.4E-19 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Pfam PF04851 Type III restriction enzyme, res subunit 13 138 6.4E-9 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Pfam PF00271 Helicase conserved C-terminal domain 435 544 6.3E-18 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 664 0.0 T 14-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 SUPERFAMILY SSF52540 3 415 1.89E-139 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 SMART SM00487 9 426 2.6E-26 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Gene3D G3DSA:3.40.50.300 1 244 2.7E-76 T 14-10-2018 RY45_10640 9988ed58a15002cadecb1b0e58bf61e0 670 Pfam PF12344 Ultra-violet resistance protein B 552 593 2.9E-19 T 14-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain RY45_04475 39531c28244a0dab8475a9796ff136f7 196 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 130 188 7.7E-23 T 14-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal RY45_04475 39531c28244a0dab8475a9796ff136f7 196 PIRSF PIRSF016938 1 193 7.4E-39 T 14-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 RY45_04475 39531c28244a0dab8475a9796ff136f7 196 SUPERFAMILY SSF89069 3 67 5.89E-21 T 14-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 RY45_04475 39531c28244a0dab8475a9796ff136f7 196 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 83 1.5E-29 T 14-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 RY45_04475 39531c28244a0dab8475a9796ff136f7 196 Gene3D G3DSA:1.10.10.880 2 67 2.4E-27 T 14-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 RY45_15865 4d723a8ed813c4ecb2c5ff3ac3cddc94 280 SUPERFAMILY SSF53850 38 265 1.26E-28 T 14-10-2018 RY45_15865 4d723a8ed813c4ecb2c5ff3ac3cddc94 280 Pfam PF12849 PBP superfamily domain 29 255 1.1E-28 T 14-10-2018 IPR024370 PBP domain RY45_15865 4d723a8ed813c4ecb2c5ff3ac3cddc94 280 Gene3D G3DSA:3.40.190.10 39 263 7.0E-92 T 14-10-2018 RY45_15865 4d723a8ed813c4ecb2c5ff3ac3cddc94 280 Gene3D G3DSA:3.40.190.10 114 226 7.0E-92 T 14-10-2018 RY45_03150 89a878ca5809559744da8d2f41fd75cf 89 Pfam PF13670 Peptidase propeptide and YPEB domain 6 86 6.4E-29 T 14-10-2018 IPR025711 PepSY domain RY45_00810 ab987b88b33e4330a0fbd7d4444e73e6 187 Pfam PF01810 LysE type translocator 7 186 1.4E-18 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_10200 0699a0dca48d169aa45cd826537eb74e 499 SUPERFAMILY SSF53743 1 327 5.49E-122 T 14-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 RY45_10200 0699a0dca48d169aa45cd826537eb74e 499 SUPERFAMILY SSF50443 329 497 2.88E-69 T 14-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal RY45_10200 0699a0dca48d169aa45cd826537eb74e 499 PIRSF PIRSF001478 1 499 9.0E-242 T 14-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RY45_10200 0699a0dca48d169aa45cd826537eb74e 499 Hamap MF_00519 L-arabinose isomerase [araA]. 1 476 64.504 T 14-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RY45_10200 0699a0dca48d169aa45cd826537eb74e 499 Pfam PF02610 L-arabinose isomerase 5 359 9.2E-175 T 14-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RY45_10200 0699a0dca48d169aa45cd826537eb74e 499 Pfam PF11762 L-arabinose isomerase C-terminal domain 362 475 2.0E-46 T 14-10-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 RY45_10200 0699a0dca48d169aa45cd826537eb74e 499 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 1 304 2.0E-114 T 14-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RY45_10200 0699a0dca48d169aa45cd826537eb74e 499 Gene3D G3DSA:3.40.50.10940 1 175 1.1E-81 T 14-10-2018 IPR038583 L-arabinose isomerase, N-terminal domain superfamily KEGG: 00040+5.3.1.4 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 Gene3D G3DSA:3.50.50.60 8 363 1.0E-74 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 7 532 3.0E-261 T 14-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 349 359 - T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 19 29 8.7E-19 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 35 47 8.7E-19 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 6 18 8.7E-19 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 308 314 8.7E-19 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 344 356 8.7E-19 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 Pfam PF01266 FAD dependent oxidoreductase 8 356 9.2E-51 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 Gene3D G3DSA:3.30.9.10 83 315 1.0E-74 T 14-10-2018 RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 SUPERFAMILY SSF51905 6 316 2.04E-42 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 Pfam PF04324 BFD-like [2Fe-2S] binding domain 426 479 1.1E-9 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_10580 787c8ce1f346db71263ff60c52b97e68 559 Gene3D G3DSA:1.10.10.1100 415 484 8.7E-19 T 14-10-2018 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 SUPERFAMILY SSF53671 1 301 9.95E-89 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 Gene3D G3DSA:3.40.50.1370 130 296 4.7E-101 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 45 64 5.8E-18 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 265 288 5.8E-18 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 127 138 5.8E-18 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 Gene3D G3DSA:3.40.50.1370 3 129 4.7E-101 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 2 300 4.2E-99 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 279 290 1.3E-22 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 76 89 1.3E-22 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 43 57 1.3E-22 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 116 130 1.3E-22 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 218 228 1.3E-22 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 140 1.3E-42 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 147 298 7.8E-46 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RY45_03415 229ab938a010e4dfaf83c5f843964da0 303 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 1 301 68.538 T 14-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RY45_01010 1b806ac97a29d0c17b50d3b2b1e9386f 485 PIRSF PIRSF006247 1 485 3.7E-179 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 RY45_01010 1b806ac97a29d0c17b50d3b2b1e9386f 485 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 468 4.6E-115 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 RY45_01010 1b806ac97a29d0c17b50d3b2b1e9386f 485 Pfam PF02386 Cation transport protein 38 479 1.2E-90 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 5 255 40.449 T 14-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 8 255 1.1E-86 T 14-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 PRINTS PR00377 Inositol monophosphatase superfamily signature 213 237 3.8E-12 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 PRINTS PR00377 Inositol monophosphatase superfamily signature 59 75 3.8E-12 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 3.8E-12 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 3.8E-12 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 Pfam PF00459 Inositol monophosphatase family 11 248 1.1E-45 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 14-10-2018 IPR020583 Inositol monophosphatase, metal-binding site RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 Gene3D G3DSA:3.40.190.80 153 256 6.1E-33 T 14-10-2018 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 SUPERFAMILY SSF56655 9 253 4.71E-70 T 14-10-2018 RY45_17980 d8c5db2474c4fae93972c181f5c28374 256 Gene3D G3DSA:3.30.540.10 6 152 1.9E-44 T 14-10-2018 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 Gene3D G3DSA:3.90.600.10 330 429 8.8E-34 T 14-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 43.348 T 14-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 Gene3D G3DSA:3.30.470.20 191 329 6.9E-58 T 14-10-2018 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 421 5.2E-29 T 14-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 SUPERFAMILY SSF52440 1 103 8.06E-37 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 SMART SM01209 103 296 4.3E-140 T 14-10-2018 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 14-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 424 2.8E-183 T 14-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 Gene3D G3DSA:3.30.1490.20 121 190 9.0E-29 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 SMART SM01210 330 423 5.4E-52 T 14-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 2.6E-82 T 14-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 SUPERFAMILY SSF56059 104 321 3.54E-67 T 14-10-2018 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 6.1E-36 T 14-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 SUPERFAMILY SSF51246 329 423 1.46E-31 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RY45_04700 83e53a58fc26737070f4d134d9b44dc9 429 Gene3D G3DSA:3.40.50.20 2 95 2.3E-38 T 14-10-2018 RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 Gene3D G3DSA:3.30.565.10 216 372 1.7E-24 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 SUPERFAMILY SSF52172 3 131 2.42E-40 T 14-10-2018 IPR011006 CheY-like superfamily RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 SMART SM00387 261 374 5.2E-8 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 SUPERFAMILY SSF55874 220 373 3.54E-21 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 Gene3D G3DSA:3.40.50.2300 2 130 6.8E-39 T 14-10-2018 RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 SMART SM00448 2 115 4.5E-41 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 Pfam PF00072 Response regulator receiver domain 4 115 1.0E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 269 373 2.3E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 301 315 2.3E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 329 2.3E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 371 2.3E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15800 92fca9ec70ee3e8023c71684ea60fcb5 376 Gene3D G3DSA:1.10.287.130 131 215 5.5E-7 T 14-10-2018 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 495 1.9E-59 T 14-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 715 0.0 T 14-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 SUPERFAMILY SSF51735 316 496 1.18E-56 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 Gene3D G3DSA:1.10.1040.50 498 710 9.9E-76 T 14-10-2018 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 208 2.0E-40 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 SUPERFAMILY SSF48179 626 715 9.35E-27 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 Gene3D G3DSA:3.90.226.10 1 312 2.6E-95 T 14-10-2018 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 628 708 3.4E-7 T 14-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 593 1.1E-24 T 14-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 SUPERFAMILY SSF48179 496 602 1.96E-28 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 518 - T 14-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 SUPERFAMILY SSF52096 2 304 2.13E-68 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 54.64 T 14-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_00990 7a39e73c29a590a448ae70542ab5258b 715 Gene3D G3DSA:3.40.50.720 315 497 1.6E-65 T 14-10-2018 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Pfam PF00689 Cation transporting ATPase, C-terminus 732 899 2.8E-11 T 14-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Gene3D G3DSA:3.40.50.1000 595 685 1.2E-21 T 14-10-2018 IPR023214 HAD superfamily RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 SMART SM00831 31 104 4.7E-14 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Gene3D G3DSA:1.20.1110.10 275 391 3.4E-13 T 14-10-2018 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 SUPERFAMILY SSF81665 35 916 1.31E-95 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 22 919 0.0 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 614 734 3.8E-28 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 273 407 3.4E-21 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Gene3D G3DSA:1.20.1110.10 686 920 1.1E-8 T 14-10-2018 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Pfam PF00702 haloacid dehalogenase-like hydrolase 373 661 1.6E-18 T 14-10-2018 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 SUPERFAMILY SSF81653 166 276 1.7E-24 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Gene3D G3DSA:3.40.1110.10 392 558 6.6E-52 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 307 326 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 411 424 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 755 768 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 705 720 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 775 791 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 290 306 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 723 734 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 872 893 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 PRINTS PR01836 Magnesium-transporting ATPase signature 822 843 5.2E-63 T 14-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Gene3D G3DSA:2.70.150.10 124 274 1.5E-38 T 14-10-2018 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 SUPERFAMILY SSF56784 375 747 3.3E-36 T 14-10-2018 IPR036412 HAD-like superfamily RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Pfam PF00122 E1-E2 ATPase 166 357 1.1E-42 T 14-10-2018 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 379 385 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RY45_01475 52cf2b2bbf845ba9eb12e4655dc3d755 920 Pfam PF00690 Cation transporter/ATPase, N-terminus 47 99 6.3E-15 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 RY45_13935 130374d27f940fd1bc76da360d4001e2 244 Pfam PF05844 YopD protein 1 243 9.7E-96 T 14-10-2018 IPR008898 YopD-like RY45_20150 01d9e4053b362960c89c1b6b704bbe27 312 Gene3D G3DSA:3.40.50.150 10 309 1.7E-105 T 14-10-2018 RY45_20150 01d9e4053b362960c89c1b6b704bbe27 312 Pfam PF01795 MraW methylase family 5 309 2.0E-114 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RY45_20150 01d9e4053b362960c89c1b6b704bbe27 312 SUPERFAMILY SSF53335 7 310 2.16E-43 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_20150 01d9e4053b362960c89c1b6b704bbe27 312 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 309 3.2E-121 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RY45_20150 01d9e4053b362960c89c1b6b704bbe27 312 PIRSF PIRSF004486 1 311 8.8E-101 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RY45_20150 01d9e4053b362960c89c1b6b704bbe27 312 Gene3D G3DSA:1.10.150.170 112 214 1.7E-105 T 14-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 RY45_20150 01d9e4053b362960c89c1b6b704bbe27 312 SUPERFAMILY SSF81799 114 213 9.81E-34 T 14-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 RY45_20150 01d9e4053b362960c89c1b6b704bbe27 312 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 310 37.871 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RY45_17445 959ed245191a8b9721030aafd7634188 394 Gene3D G3DSA:3.40.47.10 243 387 4.7E-40 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17445 959ed245191a8b9721030aafd7634188 394 Gene3D G3DSA:3.40.47.10 5 237 8.5E-31 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17445 959ed245191a8b9721030aafd7634188 394 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 241 340 5.9E-27 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RY45_17445 959ed245191a8b9721030aafd7634188 394 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 97 232 2.2E-18 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_17445 959ed245191a8b9721030aafd7634188 394 SUPERFAMILY SSF53901 4 233 1.34E-34 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17445 959ed245191a8b9721030aafd7634188 394 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site RY45_17445 959ed245191a8b9721030aafd7634188 394 SUPERFAMILY SSF53901 209 390 1.28E-46 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17445 959ed245191a8b9721030aafd7634188 394 SMART SM00825 Beta-ketoacyl synthase 1 393 3.1E-7 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RY45_15965 3d6e624d00d1750b0e09827cd8c13df7 327 SUPERFAMILY SSF161098 94 309 4.97E-17 T 14-10-2018 IPR035906 MetI-like superfamily RY45_15965 3d6e624d00d1750b0e09827cd8c13df7 327 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 323 8.6E-41 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_15965 3d6e624d00d1750b0e09827cd8c13df7 327 Gene3D G3DSA:1.10.3720.10 89 316 2.4E-18 T 14-10-2018 IPR035906 MetI-like superfamily RY45_12415 ac1f70ae803b8573fca136750f84ced2 658 SUPERFAMILY SSF53335 7 475 1.13E-113 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_12415 ac1f70ae803b8573fca136750f84ced2 658 Gene3D G3DSA:3.40.50.150 153 462 2.7E-88 T 14-10-2018 RY45_12415 ac1f70ae803b8573fca136750f84ced2 658 Pfam PF02384 N-6 DNA Methylase 153 452 7.5E-55 T 14-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RY45_12415 ac1f70ae803b8573fca136750f84ced2 658 Pfam PF12161 HsdM N-terminal domain 8 139 3.7E-20 T 14-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain RY45_12415 ac1f70ae803b8573fca136750f84ced2 658 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 282 288 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_12415 ac1f70ae803b8573fca136750f84ced2 658 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 174 190 1.6E-9 T 14-10-2018 RY45_12415 ac1f70ae803b8573fca136750f84ced2 658 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 207 221 1.6E-9 T 14-10-2018 RY45_12415 ac1f70ae803b8573fca136750f84ced2 658 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 279 291 1.6E-9 T 14-10-2018 RY45_09545 5e6711c542f6f37f981e991bf9d98dd7 172 Gene3D G3DSA:1.20.1280.20 80 171 2.7E-25 T 14-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_09545 5e6711c542f6f37f981e991bf9d98dd7 172 Gene3D G3DSA:1.10.287.110 1 79 2.6E-23 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_09545 5e6711c542f6f37f981e991bf9d98dd7 172 SUPERFAMILY SSF46565 1 74 8.64E-17 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_09545 5e6711c542f6f37f981e991bf9d98dd7 172 SMART SM00271 1 66 2.9E-6 T 14-10-2018 IPR001623 DnaJ domain RY45_09545 5e6711c542f6f37f981e991bf9d98dd7 172 SUPERFAMILY SSF47144 78 170 2.22E-22 T 14-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_09545 5e6711c542f6f37f981e991bf9d98dd7 172 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 4.3E-42 T 14-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_09545 5e6711c542f6f37f981e991bf9d98dd7 172 Pfam PF07743 HSCB C-terminal oligomerisation domain 87 163 8.0E-17 T 14-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_09545 5e6711c542f6f37f981e991bf9d98dd7 172 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 25.204 T 14-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_11150 f98adfa0877c844c07e494b2388f369a 588 PIRSF PIRSF026713 7 588 2.3E-187 T 14-10-2018 IPR016847 Mannose-6-phosphate isomerase, Firmicutes, long form, predicted RY45_11150 f98adfa0877c844c07e494b2388f369a 588 SUPERFAMILY SSF51182 236 578 1.43E-67 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_11150 f98adfa0877c844c07e494b2388f369a 588 Gene3D G3DSA:2.60.120.10 233 476 4.8E-67 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Gene3D G3DSA:3.30.413.10 202 335 3.4E-44 T 14-10-2018 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 SUPERFAMILY SSF55124 14 144 2.62E-26 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Gene3D G3DSA:3.90.480.10 80 166 3.5E-23 T 14-10-2018 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Gene3D G3DSA:3.90.480.10 336 421 7.2E-31 T 14-10-2018 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 431 556 0.062 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 78 137 7.5E-15 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 351 414 7.6E-13 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 SUPERFAMILY SSF56014 428 558 8.37E-33 T 14-10-2018 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 9 569 58.687 T 14-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 SUPERFAMILY SSF55124 344 420 1.21E-20 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 476 492 - T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Gene3D G3DSA:3.30.413.10 424 566 3.2E-34 T 14-10-2018 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 172 328 1.2E-44 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 SUPERFAMILY SSF56014 148 342 3.14E-56 T 14-10-2018 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 PRINTS PR00397 Sirohaem Fe-binding site signature 476 494 1.2E-8 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 PRINTS PR00397 Sirohaem Fe-binding site signature 428 446 1.2E-8 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17375 6755ddde1e36033df274ba5b686f75c6 570 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 18 557 1.3E-277 T 14-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 9.9E-52 T 14-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 24.581 T 14-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 Gene3D G3DSA:3.40.5.10 1 50 2.5E-23 T 14-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 SUPERFAMILY SSF55653 62 147 6.8E-23 T 14-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 14-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 Gene3D G3DSA:3.10.430.100 62 147 3.6E-26 T 14-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 4.4E-24 T 14-10-2018 IPR020069 Ribosomal protein L9, C-terminal RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 8.9E-22 T 14-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04025 35bdcdf9d01ba73ac5a94f2be3af7bf2 148 SUPERFAMILY SSF55658 1 57 2.09E-18 T 14-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RY45_15415 671fbd046ab062e89951b91880b23c40 457 SUPERFAMILY SSF56954 1 453 1.57E-87 T 14-10-2018 RY45_15415 671fbd046ab062e89951b91880b23c40 457 Gene3D G3DSA:2.20.200.10 100 343 3.2E-100 T 14-10-2018 RY45_15415 671fbd046ab062e89951b91880b23c40 457 Pfam PF02321 Outer membrane efflux protein 63 246 1.5E-17 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_15415 671fbd046ab062e89951b91880b23c40 457 Pfam PF02321 Outer membrane efflux protein 274 452 1.8E-21 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_15415 671fbd046ab062e89951b91880b23c40 457 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 453 1.7E-77 T 14-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 RY45_15415 671fbd046ab062e89951b91880b23c40 457 Gene3D G3DSA:1.20.1600.10 53 453 3.2E-100 T 14-10-2018 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 Gene3D G3DSA:3.30.20.10 237 312 3.5E-86 T 14-10-2018 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 Pfam PF00182 Chitinase class I 168 393 5.0E-39 T 14-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 SUPERFAMILY SSF53955 148 408 1.07E-61 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 SMART SM00495 578 629 8.6E-6 T 14-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 SMART SM00495 17 62 1.8E-4 T 14-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 SUPERFAMILY SSF49299 476 566 1.65E-5 T 14-10-2018 IPR035986 PKD domain superfamily RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 Gene3D G3DSA:1.10.530.10 157 405 3.5E-86 T 14-10-2018 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 SUPERFAMILY SSF51055 16 67 4.05E-7 T 14-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 SMART SM00089 480 569 0.0019 T 14-10-2018 IPR022409 PKD/Chitinase domain RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 Gene3D G3DSA:2.10.10.20 12 69 4.3E-7 T 14-10-2018 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 Pfam PF02839 Carbohydrate binding domain 34 63 6.4E-5 T 14-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RY45_05400 0d68212ba559afa45165c69fc8e950cc 633 Gene3D G3DSA:2.60.40.10 474 567 1.6E-15 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 PRINTS PR00446 Hydrogen uptake protein signature 68 84 4.6E-9 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 PRINTS PR00446 Hydrogen uptake protein signature 16 27 4.6E-9 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 PRINTS PR00446 Hydrogen uptake protein signature 4 16 4.6E-9 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 PRINTS PR00446 Hydrogen uptake protein signature 57 67 4.6E-9 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 PRINTS PR00446 Hydrogen uptake protein signature 34 51 4.6E-9 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 TIGRFAM TIGR00142 hycI: hydrogenase maturation peptidase HycI 5 145 2.5E-45 T 14-10-2018 IPR004420 Peptidase A31, hydrogenase maturation protease HycI GO:0008233 RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 Gene3D G3DSA:3.40.50.1450 2 155 4.4E-47 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 Pfam PF01750 Hydrogenase maturation protease 22 137 1.1E-17 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 5 140 6.4E-35 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13015 6906dc00b6a546461d6e1ff8ceee28cf 169 SUPERFAMILY SSF53163 5 142 4.71E-33 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily RY45_10425 f90b310788850d00231e38f40523857f 371 Gene3D G3DSA:3.40.50.720 4 357 4.6E-145 T 14-10-2018 RY45_10425 f90b310788850d00231e38f40523857f 371 SMART SM00859 3 122 1.5E-26 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RY45_10425 f90b310788850d00231e38f40523857f 371 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 14-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_10425 f90b310788850d00231e38f40523857f 371 SUPERFAMILY SSF55347 134 355 4.76E-77 T 14-10-2018 RY45_10425 f90b310788850d00231e38f40523857f 371 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 8.8E-23 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RY45_10425 f90b310788850d00231e38f40523857f 371 Gene3D G3DSA:3.30.360.10 135 351 4.6E-145 T 14-10-2018 RY45_10425 f90b310788850d00231e38f40523857f 371 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 368 2.4E-204 T 14-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_10425 f90b310788850d00231e38f40523857f 371 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 368 34.106 T 14-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_10425 f90b310788850d00231e38f40523857f 371 PIRSF PIRSF000148 1 371 1.1E-68 T 14-10-2018 RY45_10425 f90b310788850d00231e38f40523857f 371 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 354 1.5E-58 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_10425 f90b310788850d00231e38f40523857f 371 SUPERFAMILY SSF51735 1 147 1.54E-51 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 1.2E-10 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 657 5.9E-202 T 14-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 126 2.4E-14 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 Gene3D G3DSA:3.40.50.740 512 692 6.7E-15 T 14-10-2018 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 SUPERFAMILY SSF53706 219 686 3.05E-81 T 14-10-2018 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 SUPERFAMILY SSF54292 1 77 3.84E-18 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 Gene3D G3DSA:2.20.25.90 221 274 2.8E-12 T 14-10-2018 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 Gene3D G3DSA:3.10.20.740 1 128 8.0E-28 T 14-10-2018 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 Pfam PF00384 Molybdopterin oxidoreductase 555 640 2.4E-10 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 SUPERFAMILY SSF54862 81 213 6.7E-34 T 14-10-2018 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 SUPERFAMILY SSF50692 807 891 6.78E-9 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 SMART SM00929 88 128 4.9E-18 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 SMART SM00926 221 275 1.7E-10 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09680 b83a740f4cb7f6ee33c141dfd301dec2 909 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 3.6E-11 T 14-10-2018 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 PIRSF PIRSF000429 1 387 9.2E-133 T 14-10-2018 IPR002155 Thiolase GO:0016747 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 5.5E-50 T 14-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 Pfam PF00108 Thiolase, N-terminal domain 4 253 2.9E-81 T 14-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 1.1E-141 T 14-10-2018 IPR002155 Thiolase GO:0016747 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 SUPERFAMILY SSF53901 1 258 9.77E-79 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 Gene3D G3DSA:3.40.47.10 4 267 3.8E-152 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 SUPERFAMILY SSF53901 262 386 2.18E-43 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 14-10-2018 IPR020610 Thiolase, active site GO:0016747 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 Gene3D G3DSA:3.40.47.10 134 381 3.8E-152 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 14-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 7.0E-227 T 14-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 62.978 T 14-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 RY45_00985 ec297342a5f99def55cce490b53b54f6 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 14-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 8 225 3.9E-59 T 14-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 232 439 1.3E-46 T 14-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 75 99 - T 14-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 Gene3D G3DSA:1.20.1250.20 1 227 4.4E-74 T 14-10-2018 RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 Gene3D G3DSA:1.20.1250.20 228 455 3.6E-59 T 14-10-2018 RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 SUPERFAMILY SSF103473 6 438 1.57E-41 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 Pfam PF00854 POT family 233 411 1.5E-34 T 14-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 Pfam PF00854 POT family 87 199 8.2E-30 T 14-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 RY45_17995 2725d89f7a38cc1c1a9ccf2715e4ab9b 465 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 155 167 - T 14-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 633 7.5E-244 T 14-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 Gene3D G3DSA:3.40.50.140 1 154 3.5E-59 T 14-10-2018 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 SMART SM00437 278 557 1.9E-89 T 14-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 7.1E-24 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 7.1E-24 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 7.1E-24 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 321 330 7.1E-24 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 520 534 7.1E-24 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 SMART SM00493 1 124 1.6E-21 T 14-10-2018 IPR006171 TOPRIM domain RY45_21125 60f8d1846af7be2cca435716998a23f3 663 Pfam PF01751 Toprim domain 3 130 6.5E-14 T 14-10-2018 IPR006171 TOPRIM domain RY45_21125 60f8d1846af7be2cca435716998a23f3 663 Gene3D G3DSA:1.10.290.10 287 416 4.2E-165 T 14-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 642 59.125 T 14-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 SUPERFAMILY SSF56712 1 605 1.44E-185 T 14-10-2018 IPR023405 DNA topoisomerase, type IA, core domain RY45_21125 60f8d1846af7be2cca435716998a23f3 663 Gene3D G3DSA:1.10.460.10 160 599 4.2E-165 T 14-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 Pfam PF01131 DNA topoisomerase 155 591 3.6E-114 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 330 - T 14-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 Gene3D G3DSA:2.70.20.10 215 487 4.2E-165 T 14-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RY45_21125 60f8d1846af7be2cca435716998a23f3 663 SMART SM00436 126 221 3.4E-35 T 14-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RY45_02385 ecf1c0c06cbb9b7eacb8ba42a78e676d 223 SUPERFAMILY SSF52402 2 221 1.03E-61 T 14-10-2018 RY45_02385 ecf1c0c06cbb9b7eacb8ba42a78e676d 223 Gene3D G3DSA:3.90.1490.10 149 218 1.8E-6 T 14-10-2018 RY45_02385 ecf1c0c06cbb9b7eacb8ba42a78e676d 223 Gene3D G3DSA:3.40.50.620 1 145 1.6E-26 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_02385 ecf1c0c06cbb9b7eacb8ba42a78e676d 223 Pfam PF01902 Diphthamide synthase 4 210 3.0E-25 T 14-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 318 9.9E-65 T 14-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 Gene3D G3DSA:2.30.30.100 272 321 6.3E-19 T 14-10-2018 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 Pfam PF08279 HTH domain 8 59 3.9E-12 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 Gene3D G3DSA:1.10.10.10 3 64 1.1E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 4.2E-20 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 318 32.145 T 14-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 Pfam PF02237 Biotin protein ligase C terminal domain 273 318 4.4E-12 T 14-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 SUPERFAMILY SSF50037 272 318 3.52E-11 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 Gene3D G3DSA:3.30.930.10 66 271 1.4E-67 T 14-10-2018 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 SUPERFAMILY SSF55681 74 269 1.57E-56 T 14-10-2018 RY45_21105 c06ed7353058c7dbfc28a9b03d2f6167 321 SUPERFAMILY SSF46785 1 61 5.67E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_06405 f23252ad8d1e7575ac03d92aa0417493 302 SUPERFAMILY SSF46785 3 86 4.71E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_06405 f23252ad8d1e7575ac03d92aa0417493 302 Pfam PF03466 LysR substrate binding domain 92 298 6.1E-34 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_06405 f23252ad8d1e7575ac03d92aa0417493 302 Gene3D G3DSA:1.10.10.10 6 93 1.4E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06405 f23252ad8d1e7575ac03d92aa0417493 302 SUPERFAMILY SSF53850 92 301 2.9E-36 T 14-10-2018 RY45_06405 f23252ad8d1e7575ac03d92aa0417493 302 Gene3D G3DSA:3.40.190.10 168 270 1.6E-49 T 14-10-2018 RY45_06405 f23252ad8d1e7575ac03d92aa0417493 302 Gene3D G3DSA:3.40.190.10 96 295 1.6E-49 T 14-10-2018 RY45_06405 f23252ad8d1e7575ac03d92aa0417493 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.2E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SUPERFAMILY SSF52172 664 823 2.85E-37 T 14-10-2018 IPR011006 CheY-like superfamily RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Gene3D G3DSA:1.20.1480.50 160 254 1.0E-8 T 14-10-2018 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Gene3D G3DSA:1.10.287.130 255 353 7.1E-30 T 14-10-2018 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Pfam PF00072 Response regulator receiver domain 667 778 9.2E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SUPERFAMILY SSF47226 793 901 8.24E-13 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SMART SM00387 402 519 6.9E-38 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Gene3D G3DSA:3.30.565.10 354 521 4.0E-52 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SMART SM00304 198 250 1.0E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Pfam PF01627 Hpt domain 812 897 2.7E-8 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 2.7E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 2.7E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 2.7E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 2.7E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SMART SM00448 665 778 4.7E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SUPERFAMILY SSF52172 531 646 5.98E-8 T 14-10-2018 IPR011006 CheY-like superfamily RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Gene3D G3DSA:3.40.50.2300 528 648 3.1E-9 T 14-10-2018 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Pfam PF00512 His Kinase A (phospho-acceptor) domain 291 355 1.3E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Gene3D G3DSA:3.40.50.2300 654 791 1.5E-39 T 14-10-2018 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 518 7.7E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SUPERFAMILY SSF55874 344 516 9.43E-45 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SUPERFAMILY SSF47384 275 356 2.75E-22 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SUPERFAMILY SSF158472 199 248 1.96E-6 T 14-10-2018 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 SMART SM00388 290 355 1.3E-23 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Gene3D G3DSA:1.20.120.160 792 903 9.4E-26 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_04580 02ebedd09af502f9847c5ec26d81c835 903 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 174 5.7E-53 T 14-10-2018 IPR019247 Histidine kinase BarA, N-terminal RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 Gene3D G3DSA:3.50.7.10 192 372 2.9E-238 T 14-10-2018 IPR027409 GroEL-like apical domain superfamily RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 SUPERFAMILY SSF52029 184 376 2.44E-82 T 14-10-2018 IPR027409 GroEL-like apical domain superfamily RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 14-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 SUPERFAMILY SSF48592 7 521 2.08E-74 T 14-10-2018 IPR027413 GroEL-like equatorial domain superfamily RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 1.0E-253 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 SUPERFAMILY SSF54849 137 203 3.2E-24 T 14-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 Gene3D G3DSA:1.10.560.10 8 521 2.9E-238 T 14-10-2018 IPR027413 GroEL-like equatorial domain superfamily RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 5.7E-94 T 14-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 Gene3D G3DSA:3.30.260.10 136 410 2.9E-238 T 14-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RY45_04805 9b7aa1ae50477088bdb5d21ab1fc2275 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 541 41.187 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RY45_11400 c265c947839373e5f85ef3aed3f06bd9 152 SUPERFAMILY SSF55781 3 148 1.29E-41 T 14-10-2018 RY45_11400 c265c947839373e5f85ef3aed3f06bd9 152 Gene3D G3DSA:3.30.450.40 2 152 1.0E-65 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_11400 c265c947839373e5f85ef3aed3f06bd9 152 Pfam PF13185 GAF domain 38 143 1.8E-10 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 SMART SM00052 393 637 7.0E-23 T 14-10-2018 IPR001633 EAL domain RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 Pfam PF00563 EAL domain 404 632 5.1E-46 T 14-10-2018 IPR001633 EAL domain RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 34 128 1.7E-24 T 14-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 SMART SM00267 211 381 3.4E-7 T 14-10-2018 IPR000160 GGDEF domain RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 SUPERFAMILY SSF55073 227 383 2.75E-13 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 374 2.5E-16 T 14-10-2018 IPR000160 GGDEF domain RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 SUPERFAMILY SSF141868 402 632 1.16E-46 T 14-10-2018 IPR035919 EAL domain superfamily RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 Gene3D G3DSA:3.20.20.450 394 638 8.2E-46 T 14-10-2018 IPR035919 EAL domain superfamily RY45_02200 c9fb8c4e2bb5700e964c745705528f50 642 Gene3D G3DSA:3.30.70.270 205 382 1.0E-18 T 14-10-2018 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 SUPERFAMILY SSF109998 248 430 3.01E-49 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 SUPERFAMILY SSF54534 89 241 9.82E-36 T 14-10-2018 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 229 4.8E-14 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 413 9.0E-38 T 14-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 PIRSF PIRSF003095 1 434 8.3E-122 T 14-10-2018 IPR005215 Trigger factor GO:0015031 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 Gene3D G3DSA:3.10.50.40 150 246 7.3E-104 T 14-10-2018 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 SUPERFAMILY SSF102735 1 129 3.4E-38 T 14-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 Gene3D G3DSA:1.10.3120.10 116 418 7.3E-104 T 14-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 9.5E-41 T 14-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 Gene3D G3DSA:3.30.70.1050 1 115 1.6E-39 T 14-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 Hamap MF_00303 Trigger factor [tig]. 1 419 21.122 T 14-10-2018 IPR005215 Trigger factor GO:0015031 RY45_12620 00a32b40993fc5b05223f90bec8ba42f 436 TIGRFAM TIGR00115 tig: trigger factor 11 413 4.7E-141 T 14-10-2018 IPR005215 Trigger factor GO:0015031 RY45_04695 54d47b87a9044d47fc624dcf9e42648c 124 Gene3D G3DSA:1.20.120.10 24 121 5.7E-7 T 14-10-2018 RY45_04695 54d47b87a9044d47fc624dcf9e42648c 124 SUPERFAMILY SSF47175 26 118 2.33E-14 T 14-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RY45_04695 54d47b87a9044d47fc624dcf9e42648c 124 Pfam PF07361 Cytochrome b562 25 120 1.9E-21 T 14-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 RY45_01510 e9083146f6b3b7b9ae90f53ffefd51b9 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RY45_01510 e9083146f6b3b7b9ae90f53ffefd51b9 498 SUPERFAMILY SSF53720 2 484 1.96E-145 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_01510 e9083146f6b3b7b9ae90f53ffefd51b9 498 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 482 4.4E-206 T 14-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 RY45_01510 e9083146f6b3b7b9ae90f53ffefd51b9 498 Gene3D G3DSA:3.40.309.10 250 451 2.5E-148 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_01510 e9083146f6b3b7b9ae90f53ffefd51b9 498 Gene3D G3DSA:3.40.605.10 25 459 2.5E-148 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_01510 e9083146f6b3b7b9ae90f53ffefd51b9 498 Pfam PF00171 Aldehyde dehydrogenase family 16 478 3.4E-136 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_20030 e1372dd067ac05bf387265a34efbf0ba 142 Pfam PF00114 Pilin (bacterial filament) 36 128 2.5E-4 T 14-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 RY45_20030 e1372dd067ac05bf387265a34efbf0ba 142 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 9.1E-10 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_20030 e1372dd067ac05bf387265a34efbf0ba 142 SUPERFAMILY SSF54523 7 134 2.3E-25 T 14-10-2018 RY45_20030 e1372dd067ac05bf387265a34efbf0ba 142 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 4.7E-11 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_20030 e1372dd067ac05bf387265a34efbf0ba 142 Gene3D G3DSA:3.30.700.10 7 139 3.7E-28 T 14-10-2018 RY45_20030 e1372dd067ac05bf387265a34efbf0ba 142 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 PIRSF PIRSF001327 5 594 6.3E-264 T 14-10-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 18 298 7.2E-82 T 14-10-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 Gene3D G3DSA:3.40.50.300 319 592 3.6E-72 T 14-10-2018 RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 SUPERFAMILY SSF52540 324 582 6.18E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 SUPERFAMILY SSF52540 15 296 4.15E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 SMART SM00382 13 244 0.72 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 SMART SM00382 335 528 0.034 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 TIGRFAM TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase 13 579 1.9E-271 T 14-10-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 Pfam PF02374 Anion-transporting ATPase 492 595 2.1E-10 T 14-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 Pfam PF02374 Anion-transporting ATPase 16 298 2.6E-77 T 14-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 Pfam PF02374 Anion-transporting ATPase 338 479 1.1E-27 T 14-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 RY45_09420 bc7aec5a05d166585aa86711b2ab3d79 599 Gene3D G3DSA:3.40.50.300 8 300 5.2E-84 T 14-10-2018 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 SUPERFAMILY SSF56059 1 237 1.3E-82 T 14-10-2018 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 Gene3D G3DSA:3.40.50.261 240 388 6.0E-57 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 SUPERFAMILY SSF52210 239 384 7.59E-53 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 Pfam PF08442 ATP-grasp domain 2 203 2.0E-82 T 14-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 14-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 Pfam PF00549 CoA-ligase 262 382 5.9E-24 T 14-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 Gene3D G3DSA:3.30.470.20 1 234 1.8E-95 T 14-10-2018 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 1.1E-176 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.061 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 Gene3D G3DSA:3.30.1490.20 21 104 1.8E-95 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_10345 678f263d6ed03e43c6ef88dbe0f63c50 388 PIRSF PIRSF001554 1 388 5.6E-154 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 SMART SM00387 235 351 7.5E-28 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 SMART SM00388 131 196 5.8E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 Gene3D G3DSA:3.30.450.20 7 114 6.4E-26 T 14-10-2018 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 123 9.6E-9 T 14-10-2018 IPR000014 PAS domain RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 SMART SM00091 6 74 2.4E-4 T 14-10-2018 IPR000014 PAS domain RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 Pfam PF00989 PAS fold 11 105 7.2E-14 T 14-10-2018 IPR013767 PAS fold GO:0006355 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 Gene3D G3DSA:3.30.565.10 194 351 2.8E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 SUPERFAMILY SSF47384 125 195 8.83E-14 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 Pfam PF00512 His Kinase A (phospho-acceptor) domain 133 192 2.2E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 283 297 8.1E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 330 8.1E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 Gene3D G3DSA:1.10.287.130 116 193 1.3E-15 T 14-10-2018 RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 237 350 5.1E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 SUPERFAMILY SSF55785 18 125 1.05E-12 T 14-10-2018 IPR035965 PAS domain superfamily RY45_01660 a77e0617e237179d5c22fe9a14aae72d 351 SUPERFAMILY SSF55874 198 348 2.62E-35 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_10370 ad52395e5597291c87832520ece7a006 582 SUPERFAMILY SSF161098 35 289 1.2E-47 T 14-10-2018 IPR035906 MetI-like superfamily RY45_10370 ad52395e5597291c87832520ece7a006 582 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 396 571 5.8E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_10370 ad52395e5597291c87832520ece7a006 582 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 286 4.1E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_10370 ad52395e5597291c87832520ece7a006 582 SUPERFAMILY SSF161098 319 563 7.2E-34 T 14-10-2018 IPR035906 MetI-like superfamily RY45_10370 ad52395e5597291c87832520ece7a006 582 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 37 581 8.6E-221 T 14-10-2018 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative RY45_10370 ad52395e5597291c87832520ece7a006 582 Gene3D G3DSA:1.10.3720.10 33 298 2.2E-51 T 14-10-2018 IPR035906 MetI-like superfamily RY45_10370 ad52395e5597291c87832520ece7a006 582 Gene3D G3DSA:1.10.3720.10 314 575 1.3E-34 T 14-10-2018 IPR035906 MetI-like superfamily RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 SUPERFAMILY SSF55785 151 251 1.92E-19 T 14-10-2018 IPR035965 PAS domain superfamily RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 Gene3D G3DSA:3.30.450.20 150 249 5.5E-18 T 14-10-2018 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 SMART SM00091 139 210 0.28 T 14-10-2018 IPR000014 PAS domain RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 SMART SM00091 17 88 0.51 T 14-10-2018 IPR000014 PAS domain RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 SMART SM00283 226 429 1.1E-16 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 SUPERFAMILY SSF58104 231 428 2.22E-52 T 14-10-2018 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 SUPERFAMILY SSF55785 30 131 1.27E-20 T 14-10-2018 IPR035965 PAS domain superfamily RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 Gene3D G3DSA:1.10.287.950 250 429 1.8E-43 T 14-10-2018 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 32 132 1.6E-14 T 14-10-2018 IPR000014 PAS domain RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 149 259 2.7E-14 T 14-10-2018 IPR000014 PAS domain RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 Pfam PF08447 PAS fold 164 247 1.9E-10 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 Pfam PF08447 PAS fold 43 128 1.3E-11 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 SMART SM00086 212 254 0.074 T 14-10-2018 IPR001610 PAC motif RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 SMART SM00086 93 134 0.023 T 14-10-2018 IPR001610 PAC motif RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 Gene3D G3DSA:3.30.450.20 14 140 2.7E-18 T 14-10-2018 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 323 350 2.3E-24 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 352 381 2.3E-24 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 429 2.3E-24 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 137 152 2.3E-24 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_14540 2a5d3c8fee72f96645ac4d4fe7903757 429 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 295 429 9.0E-38 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_09990 f74052d9dc8b7cbec8ed43142602b3d1 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.975 T 14-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RY45_09990 f74052d9dc8b7cbec8ed43142602b3d1 72 SMART SM00316 4 72 4.6E-6 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_09990 f74052d9dc8b7cbec8ed43142602b3d1 72 SUPERFAMILY SSF50249 1 70 3.83E-28 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_09990 f74052d9dc8b7cbec8ed43142602b3d1 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 7.2E-27 T 14-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RY45_09990 f74052d9dc8b7cbec8ed43142602b3d1 72 Gene3D G3DSA:2.40.50.140 1 72 2.7E-35 T 14-10-2018 RY45_09990 f74052d9dc8b7cbec8ed43142602b3d1 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.2E-37 T 14-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RY45_15020 7f362c5cfa4c5810ca929a22a24c7917 373 Gene3D G3DSA:3.40.50.2000 180 355 1.3E-49 T 14-10-2018 RY45_15020 7f362c5cfa4c5810ca929a22a24c7917 373 Pfam PF00534 Glycosyl transferases group 1 187 349 1.3E-29 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 RY45_15020 7f362c5cfa4c5810ca929a22a24c7917 373 Gene3D G3DSA:3.40.50.2000 25 368 1.3E-49 T 14-10-2018 RY45_15020 7f362c5cfa4c5810ca929a22a24c7917 373 Pfam PF13477 Glycosyl transferase 4-like 4 154 1.3E-28 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RY45_15020 7f362c5cfa4c5810ca929a22a24c7917 373 SUPERFAMILY SSF53756 21 372 1.79E-59 T 14-10-2018 RY45_00200 752410c1a8cbda4f2ed8f4cb9d44d1d4 208 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 5 184 1.9E-72 T 14-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 RY45_00200 752410c1a8cbda4f2ed8f4cb9d44d1d4 208 Hamap MF_00328 Guanylate kinase [gmk]. 3 188 37.066 T 14-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 RY45_00200 752410c1a8cbda4f2ed8f4cb9d44d1d4 208 ProSitePatterns PS00856 Guanylate kinase-like signature. 42 59 - T 14-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RY45_00200 752410c1a8cbda4f2ed8f4cb9d44d1d4 208 Gene3D G3DSA:3.40.50.300 9 184 7.1E-69 T 14-10-2018 RY45_00200 752410c1a8cbda4f2ed8f4cb9d44d1d4 208 SMART SM00072 4 188 2.8E-70 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RY45_00200 752410c1a8cbda4f2ed8f4cb9d44d1d4 208 Pfam PF00625 Guanylate kinase 6 185 5.3E-58 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RY45_00200 752410c1a8cbda4f2ed8f4cb9d44d1d4 208 Gene3D G3DSA:3.30.63.10 39 98 7.1E-69 T 14-10-2018 RY45_00200 752410c1a8cbda4f2ed8f4cb9d44d1d4 208 SUPERFAMILY SSF52540 3 190 6.52E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 SUPERFAMILY SSF55826 218 392 3.79E-32 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 SUPERFAMILY SSF52954 465 572 2.57E-34 T 14-10-2018 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 Gene3D G3DSA:3.90.960.10 240 391 2.2E-241 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 573 42.183 T 14-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 Pfam PF03129 Anticodon binding domain 477 570 3.2E-22 T 14-10-2018 IPR004154 Anticodon-binding RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 SUPERFAMILY SSF55681 10 480 2.31E-105 T 14-10-2018 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 Gene3D G3DSA:3.30.930.10 11 467 2.2E-241 T 14-10-2018 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 PIRSF PIRSF001535 1 574 4.5E-271 T 14-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 569 1.3E-246 T 14-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 461 8.4E-47 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 Gene3D G3DSA:3.40.50.800 4 557 2.2E-241 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily RY45_18695 a01a53bbf01a062ac353754c96e271c5 574 Pfam PF04073 Aminoacyl-tRNA editing domain 257 378 4.9E-26 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RY45_21410 ea9fd5de5b796c13aeb52d5bfb3c7950 330 PIRSF PIRSF005096 2 329 2.4E-100 T 14-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 RY45_21410 ea9fd5de5b796c13aeb52d5bfb3c7950 330 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 3 326 1.0E-129 T 14-10-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 RY45_21410 ea9fd5de5b796c13aeb52d5bfb3c7950 330 SUPERFAMILY SSF74650 6 326 2.57E-92 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RY45_21410 ea9fd5de5b796c13aeb52d5bfb3c7950 330 Gene3D G3DSA:2.70.98.10 2 328 1.4E-101 T 14-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RY45_21410 ea9fd5de5b796c13aeb52d5bfb3c7950 330 Pfam PF01263 Aldose 1-epimerase 9 325 5.8E-72 T 14-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 RY45_12765 76f2ff182ef9955c24769cd9fe9e1578 531 Pfam PF00672 HAMP domain 201 248 1.6E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_12765 76f2ff182ef9955c24769cd9fe9e1578 531 Gene3D G3DSA:1.10.287.950 201 531 9.4E-65 T 14-10-2018 RY45_12765 76f2ff182ef9955c24769cd9fe9e1578 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 312 1.1E-6 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_12765 76f2ff182ef9955c24769cd9fe9e1578 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 1.1E-6 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_12765 76f2ff182ef9955c24769cd9fe9e1578 531 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 330 496 3.2E-40 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_12765 76f2ff182ef9955c24769cd9fe9e1578 531 SMART SM00304 201 254 1.9E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_12765 76f2ff182ef9955c24769cd9fe9e1578 531 SUPERFAMILY SSF58104 222 530 1.7E-65 T 14-10-2018 RY45_12765 76f2ff182ef9955c24769cd9fe9e1578 531 SMART SM00283 269 530 1.7E-55 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08575 60abe4f0d653b89b85ef9d9161f71c4f 345 SUPERFAMILY SSF55326 7 170 2.54E-53 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_08575 60abe4f0d653b89b85ef9d9161f71c4f 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 164 1.1E-15 T 14-10-2018 IPR016188 PurM-like, N-terminal domain RY45_08575 60abe4f0d653b89b85ef9d9161f71c4f 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 334 5.5E-149 T 14-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_08575 60abe4f0d653b89b85ef9d9161f71c4f 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 340 9.1E-38 T 14-10-2018 IPR010918 PurM-like, C-terminal domain RY45_08575 60abe4f0d653b89b85ef9d9161f71c4f 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 344 46.997 T 14-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_08575 60abe4f0d653b89b85ef9d9161f71c4f 345 SUPERFAMILY SSF56042 171 342 2.99E-62 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_08575 60abe4f0d653b89b85ef9d9161f71c4f 345 Gene3D G3DSA:3.30.1330.10 6 170 6.2E-68 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_08575 60abe4f0d653b89b85ef9d9161f71c4f 345 Gene3D G3DSA:3.90.650.10 171 345 7.5E-71 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_20090 346bab568760888ec3eac9f626ca7d73 383 PRINTS PR00423 Cell division protein FtsZ signature 212 233 2.6E-52 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 PRINTS PR00423 Cell division protein FtsZ signature 98 118 2.6E-52 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 PRINTS PR00423 Cell division protein FtsZ signature 189 211 2.6E-52 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 PRINTS PR00423 Cell division protein FtsZ signature 126 147 2.6E-52 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 SMART SM00864 13 205 3.7E-111 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 5.9E-39 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 SUPERFAMILY SSF52490 13 208 1.7E-69 T 14-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 Gene3D G3DSA:3.30.1330.20 221 331 4.8E-36 T 14-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 331 3.9E-137 T 14-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 Gene3D G3DSA:3.40.50.1440 4 220 1.2E-80 T 14-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 Pfam PF12327 FtsZ family, C-terminal domain 222 316 9.6E-39 T 14-10-2018 IPR024757 Cell division protein FtsZ, C-terminal RY45_20090 346bab568760888ec3eac9f626ca7d73 383 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 14-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 SUPERFAMILY SSF55307 204 320 4.81E-43 T 14-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 383 38.322 T 14-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 SMART SM00865 207 325 5.4E-56 T 14-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 RY45_20090 346bab568760888ec3eac9f626ca7d73 383 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 14-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RY45_20770 26d49610c1f57827b32431863d109e58 687 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 27 683 49.15 T 14-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 RY45_20770 26d49610c1f57827b32431863d109e58 687 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 19 685 9.6E-184 T 14-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 RY45_20770 26d49610c1f57827b32431863d109e58 687 Gene3D G3DSA:3.40.50.300 211 438 7.9E-68 T 14-10-2018 RY45_20770 26d49610c1f57827b32431863d109e58 687 Pfam PF13604 AAA domain 236 400 1.3E-30 T 14-10-2018 RY45_20770 26d49610c1f57827b32431863d109e58 687 Gene3D G3DSA:1.10.10.1020 12 132 2.3E-17 T 14-10-2018 RY45_20770 26d49610c1f57827b32431863d109e58 687 Gene3D G3DSA:3.40.50.300 448 558 2.8E-26 T 14-10-2018 RY45_20770 26d49610c1f57827b32431863d109e58 687 Gene3D G3DSA:3.40.50.300 559 674 7.8E-27 T 14-10-2018 RY45_20770 26d49610c1f57827b32431863d109e58 687 SUPERFAMILY SSF52540 25 426 1.06E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20770 26d49610c1f57827b32431863d109e58 687 Pfam PF13538 UvrD-like helicase C-terminal domain 614 658 1.1E-15 T 14-10-2018 IPR027785 UvrD-like helicase C-terminal domain RY45_20770 26d49610c1f57827b32431863d109e58 687 SUPERFAMILY SSF52540 366 685 1.86E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 Pfam PF03466 LysR substrate binding domain 90 294 8.5E-45 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 Gene3D G3DSA:3.40.190.10 91 291 2.4E-64 T 14-10-2018 RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 Gene3D G3DSA:3.40.190.10 164 265 2.4E-64 T 14-10-2018 RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 SUPERFAMILY SSF46785 4 111 5.05E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 2.4E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 Gene3D G3DSA:1.10.10.10 2 87 5.3E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01405 675a0d3da519c9ca7590ca9f84332a74 297 SUPERFAMILY SSF53850 90 295 2.35E-46 T 14-10-2018 RY45_02400 cf02a2a9c251a1484f07880ea566143e 356 Gene3D G3DSA:3.60.40.10 161 349 1.0E-34 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RY45_02400 cf02a2a9c251a1484f07880ea566143e 356 SMART SM00387 39 139 2.4E-5 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_02400 cf02a2a9c251a1484f07880ea566143e 356 SMART SM00331 161 350 2.2E-7 T 14-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RY45_02400 cf02a2a9c251a1484f07880ea566143e 356 SUPERFAMILY SSF81606 175 350 1.06E-11 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RY45_02400 cf02a2a9c251a1484f07880ea566143e 356 Gene3D G3DSA:3.30.565.10 19 136 1.1E-12 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_02400 cf02a2a9c251a1484f07880ea566143e 356 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 132 7.5E-7 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_02400 cf02a2a9c251a1484f07880ea566143e 356 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 188 350 4.3E-11 T 14-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RY45_02400 cf02a2a9c251a1484f07880ea566143e 356 SUPERFAMILY SSF55874 30 132 1.96E-14 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_03725 ac1d2fe4ba21dc2ee15b0b1e9329370b 245 SMART SM00079 22 245 0.0054 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RY45_03725 ac1d2fe4ba21dc2ee15b0b1e9329370b 245 SMART SM00062 22 245 6.9E-77 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_03725 ac1d2fe4ba21dc2ee15b0b1e9329370b 245 SUPERFAMILY SSF53850 1 243 2.37E-66 T 14-10-2018 RY45_03725 ac1d2fe4ba21dc2ee15b0b1e9329370b 245 Gene3D G3DSA:3.40.190.10 108 203 8.8E-77 T 14-10-2018 RY45_03725 ac1d2fe4ba21dc2ee15b0b1e9329370b 245 Gene3D G3DSA:3.40.190.10 25 242 8.8E-77 T 14-10-2018 RY45_03725 ac1d2fe4ba21dc2ee15b0b1e9329370b 245 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site RY45_03725 ac1d2fe4ba21dc2ee15b0b1e9329370b 245 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 244 1.3E-65 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 150 2.2E-55 T 14-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 97 3.2E-31 T 14-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 33.358 T 14-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 103 150 2.9E-18 T 14-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 SUPERFAMILY SSF54893 2 100 4.97E-35 T 14-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 Gene3D G3DSA:3.30.70.140 1 100 2.0E-36 T 14-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 9.0E-32 T 14-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 SUPERFAMILY SSF57825 101 151 1.96E-14 T 14-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily RY45_21325 e3bc1cc55e54f451c8196f849f26c471 154 Gene3D G3DSA:2.30.30.20 101 153 2.5E-22 T 14-10-2018 RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 Gene3D G3DSA:3.30.1340.10 1 85 1.7E-29 T 14-10-2018 IPR035895 HPr-like superfamily RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 2.7E-23 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 3.3E-10 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 3.3E-10 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 3.3E-10 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 83 3.7E-22 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 SUPERFAMILY SSF55594 4 90 9.16E-24 T 14-10-2018 IPR035895 HPr-like superfamily RY45_20495 a7b056e78c9d0f32c182a6b579f48b91 90 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 41 56 - T 14-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RY45_16520 f43abf4ea87423790df11ba4c3fbc08d 274 Gene3D G3DSA:2.60.40.1590 20 116 2.8E-35 T 14-10-2018 RY45_16520 f43abf4ea87423790df11ba4c3fbc08d 274 Pfam PF01551 Peptidase family M23 171 265 2.0E-26 T 14-10-2018 IPR016047 Peptidase M23 RY45_16520 f43abf4ea87423790df11ba4c3fbc08d 274 Gene3D G3DSA:2.70.70.10 117 274 8.1E-56 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_16520 f43abf4ea87423790df11ba4c3fbc08d 274 SUPERFAMILY SSF51261 129 269 4.34E-46 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 552 7.3E-6 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 Gene3D G3DSA:3.30.450.40 260 361 1.7E-5 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 Gene3D G3DSA:3.30.565.10 412 555 6.6E-18 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 Pfam PF06580 Histidine kinase 360 438 3.2E-26 T 14-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 Pfam PF07694 5TMR of 5TMR-LYT 29 193 2.4E-43 T 14-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 SUPERFAMILY SSF55874 414 550 3.14E-19 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 Gene3D G3DSA:1.10.1760.20 36 196 5.5E-10 T 14-10-2018 RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 SUPERFAMILY SSF55781 228 346 1.65E-6 T 14-10-2018 RY45_00320 12ab066d1f0a910c660e2491886ac27d 557 SMART SM00387 451 553 8.9E-10 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_02730 d7b0f103d86a4ded666375c5a7b06d77 269 ProSitePatterns PS01229 Hypothetical cof family signature 2. 216 238 - T 14-10-2018 RY45_02730 d7b0f103d86a4ded666375c5a7b06d77 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 14-10-2018 RY45_02730 d7b0f103d86a4ded666375c5a7b06d77 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 262 8.3E-60 T 14-10-2018 IPR000150 Cof family GO:0016787 RY45_02730 d7b0f103d86a4ded666375c5a7b06d77 269 Gene3D G3DSA:3.30.1240.10 86 191 5.7E-84 T 14-10-2018 RY45_02730 d7b0f103d86a4ded666375c5a7b06d77 269 SUPERFAMILY SSF56784 1 267 6.98E-77 T 14-10-2018 IPR036412 HAD-like superfamily RY45_02730 d7b0f103d86a4ded666375c5a7b06d77 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 262 2.6E-66 T 14-10-2018 RY45_02730 d7b0f103d86a4ded666375c5a7b06d77 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 235 4.4E-26 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RY45_02730 d7b0f103d86a4ded666375c5a7b06d77 269 Gene3D G3DSA:3.40.50.1000 3 263 5.7E-84 T 14-10-2018 IPR023214 HAD superfamily RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 Gene3D G3DSA:3.30.1330.60 236 364 5.7E-39 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 PRINTS PR01022 Outer membrane protein A signature 120 136 4.6E-17 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 PRINTS PR01022 Outer membrane protein A signature 306 325 4.6E-17 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 PRINTS PR01022 Outer membrane protein A signature 339 352 4.6E-17 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 PRINTS PR01022 Outer membrane protein A signature 201 215 4.6E-17 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 SUPERFAMILY SSF56925 22 215 9.68E-31 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 SUPERFAMILY SSF103088 238 360 4.05E-31 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 Pfam PF01389 OmpA-like transmembrane domain 24 216 8.4E-41 T 14-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 ProSitePatterns PS01068 OmpA-like domain. 284 328 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 Pfam PF00691 OmpA family 249 339 1.8E-22 T 14-10-2018 IPR006665 OmpA-like domain RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 PRINTS PR01021 OMPA domain signature 282 297 2.3E-21 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 PRINTS PR01021 OMPA domain signature 250 272 2.3E-21 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 PRINTS PR01021 OMPA domain signature 297 313 2.3E-21 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_21810 6b8b3de76e587bd4e9d1e6e58db939eb 368 Gene3D G3DSA:2.40.160.20 13 235 1.3E-53 T 14-10-2018 RY45_02170 d0bd4e8bcda2a7aeb01f4bf57064e279 411 Pfam PF01979 Amidohydrolase family 66 385 3.0E-17 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_02170 d0bd4e8bcda2a7aeb01f4bf57064e279 411 Hamap MF_00372 Imidazolonepropionase [hutI]. 9 408 40.55 T 14-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02170 d0bd4e8bcda2a7aeb01f4bf57064e279 411 Gene3D G3DSA:2.30.40.10 14 405 3.5E-174 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_02170 d0bd4e8bcda2a7aeb01f4bf57064e279 411 Gene3D G3DSA:3.20.20.140 70 368 3.5E-174 T 14-10-2018 RY45_02170 d0bd4e8bcda2a7aeb01f4bf57064e279 411 TIGRFAM TIGR01224 hutI: imidazolonepropionase 31 406 3.7E-143 T 14-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02170 d0bd4e8bcda2a7aeb01f4bf57064e279 411 SUPERFAMILY SSF51556 69 368 1.65E-88 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_02170 d0bd4e8bcda2a7aeb01f4bf57064e279 411 SUPERFAMILY SSF51338 8 408 5.0E-29 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 293 6.1E-44 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 SUPERFAMILY SSF51905 149 309 1.73E-23 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 282 1.9E-6 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 1.9E-6 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.9E-6 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 1.9E-6 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 555 617 6.0E-12 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 SUPERFAMILY SSF56014 628 800 2.22E-50 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 627 763 4.0E-20 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 Gene3D G3DSA:3.50.50.60 8 282 2.3E-81 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_17560 f81745692045bd62aa10fb6a554fc801 833 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 796 0.0 T 14-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00397 Sirohaem Fe-binding site signature 674 692 6.3E-7 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00397 Sirohaem Fe-binding site signature 631 649 6.3E-7 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 9.7E-13 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 9.7E-13 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 9.7E-13 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 9.7E-13 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 SUPERFAMILY SSF51905 3 189 4.02E-40 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_17560 f81745692045bd62aa10fb6a554fc801 833 PIRSF PIRSF037149 1 829 0.0 T 14-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 Gene3D G3DSA:3.30.413.10 626 775 1.4E-35 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 Pfam PF04324 BFD-like [2Fe-2S] binding domain 418 466 4.5E-11 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_17560 f81745692045bd62aa10fb6a554fc801 833 Gene3D G3DSA:3.50.50.60 110 245 2.3E-81 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_17560 f81745692045bd62aa10fb6a554fc801 833 Gene3D G3DSA:1.10.10.1100 418 473 1.4E-11 T 14-10-2018 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 674 690 - T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17560 f81745692045bd62aa10fb6a554fc801 833 SUPERFAMILY SSF55124 495 636 1.03E-28 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_13605 ccbda002c6cd69cbb3f640f5716ccf67 345 Gene3D G3DSA:2.40.30.170 215 325 2.6E-12 T 14-10-2018 RY45_13605 ccbda002c6cd69cbb3f640f5716ccf67 345 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 66 268 2.1E-10 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_13605 ccbda002c6cd69cbb3f640f5716ccf67 345 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 288 4.7E-29 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_13605 ccbda002c6cd69cbb3f640f5716ccf67 345 Gene3D G3DSA:1.10.287.470 99 186 2.3E-9 T 14-10-2018 RY45_13605 ccbda002c6cd69cbb3f640f5716ccf67 345 SUPERFAMILY SSF111369 64 230 5.62E-17 T 14-10-2018 RY45_02310 5509e3f99a4ab0dd158bf23beb2b39c7 195 PIRSF PIRSF006305 1 194 8.1E-50 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 RY45_02310 5509e3f99a4ab0dd158bf23beb2b39c7 195 Pfam PF02545 Maf-like protein 8 188 2.6E-55 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 RY45_02310 5509e3f99a4ab0dd158bf23beb2b39c7 195 TIGRFAM TIGR00172 maf: septum formation protein Maf 8 183 3.1E-53 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 RY45_02310 5509e3f99a4ab0dd158bf23beb2b39c7 195 Gene3D G3DSA:3.90.950.10 7 192 1.1E-66 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_02310 5509e3f99a4ab0dd158bf23beb2b39c7 195 SUPERFAMILY SSF52972 7 187 2.22E-59 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_02310 5509e3f99a4ab0dd158bf23beb2b39c7 195 Hamap MF_00528 Septum formation protein Maf [maf]. 8 194 30.809 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 RY45_02045 4e22ddb1231d30516ce4e11f2b0853e3 850 Pfam PF11874 Domain of unknown function (DUF3394) 669 846 3.5E-70 T 14-10-2018 IPR021814 Protein of unknown function DUF3394 RY45_02045 4e22ddb1231d30516ce4e11f2b0853e3 850 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 134 664 4.1E-78 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RY45_02045 4e22ddb1231d30516ce4e11f2b0853e3 850 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 28 720 4.6E-210 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ RY45_16595 66872b89d3cf263ce901246f8dde9683 488 SUPERFAMILY SSF56801 3 480 1.44E-83 T 14-10-2018 RY45_16595 66872b89d3cf263ce901246f8dde9683 488 Pfam PF00501 AMP-binding enzyme 11 377 1.2E-55 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_16595 66872b89d3cf263ce901246f8dde9683 488 Gene3D G3DSA:3.30.300.30 378 482 3.8E-6 T 14-10-2018 RY45_16595 66872b89d3cf263ce901246f8dde9683 488 Gene3D G3DSA:3.40.50.12780 5 373 2.6E-65 T 14-10-2018 RY45_16595 66872b89d3cf263ce901246f8dde9683 488 ProSitePatterns PS00455 Putative AMP-binding domain signature. 140 151 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_07775 5b73dd1ad4c8cb2cc81564713b3fd85c 470 Gene3D G3DSA:3.40.50.300 164 439 1.7E-70 T 14-10-2018 RY45_07775 5b73dd1ad4c8cb2cc81564713b3fd85c 470 Gene3D G3DSA:1.10.860.10 3 160 1.2E-37 T 14-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RY45_07775 5b73dd1ad4c8cb2cc81564713b3fd85c 470 SUPERFAMILY SSF52540 184 435 4.87E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07775 5b73dd1ad4c8cb2cc81564713b3fd85c 470 Pfam PF03796 DnaB-like helicase C terminal domain 188 437 2.0E-60 T 14-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RY45_07775 5b73dd1ad4c8cb2cc81564713b3fd85c 470 SUPERFAMILY SSF48024 9 114 5.62E-30 T 14-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RY45_07775 5b73dd1ad4c8cb2cc81564713b3fd85c 470 Pfam PF00772 DnaB-like helicase N terminal domain 10 108 5.4E-30 T 14-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RY45_01055 d7047fb11807b5857cc4c795f0c4d7ec 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.9E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01055 d7047fb11807b5857cc4c795f0c4d7ec 297 Gene3D G3DSA:3.40.190.10 81 186 9.8E-20 T 14-10-2018 RY45_01055 d7047fb11807b5857cc4c795f0c4d7ec 297 Gene3D G3DSA:3.40.190.10 187 263 4.0E-11 T 14-10-2018 RY45_01055 d7047fb11807b5857cc4c795f0c4d7ec 297 SUPERFAMILY SSF53850 88 293 3.69E-37 T 14-10-2018 RY45_01055 d7047fb11807b5857cc4c795f0c4d7ec 297 Gene3D G3DSA:1.10.10.10 1 80 3.4E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01055 d7047fb11807b5857cc4c795f0c4d7ec 297 SUPERFAMILY SSF46785 1 111 3.46E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_01055 d7047fb11807b5857cc4c795f0c4d7ec 297 Pfam PF03466 LysR substrate binding domain 87 292 2.2E-40 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_20895 34ce28f4960483fb63a944572ada4533 459 ProSitePatterns PS00079 Multicopper oxidases signature 1. 420 440 - T 14-10-2018 IPR033138 Multicopper oxidases, conserved site RY45_20895 34ce28f4960483fb63a944572ada4533 459 ProSitePatterns PS00893 Nudix box signature. 51 72 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_20895 34ce28f4960483fb63a944572ada4533 459 Pfam PF00293 NUDIX domain 22 86 2.0E-12 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_20895 34ce28f4960483fb63a944572ada4533 459 SUPERFAMILY SSF55811 22 146 4.33E-20 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_20895 34ce28f4960483fb63a944572ada4533 459 Gene3D G3DSA:3.90.79.10 19 145 4.6E-17 T 14-10-2018 RY45_20895 34ce28f4960483fb63a944572ada4533 459 Gene3D G3DSA:1.20.144.10 248 343 9.4E-15 T 14-10-2018 RY45_20895 34ce28f4960483fb63a944572ada4533 459 SUPERFAMILY SSF48317 140 335 1.14E-25 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RY45_20895 34ce28f4960483fb63a944572ada4533 459 SMART SM00014 219 330 5.7E-12 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_20895 34ce28f4960483fb63a944572ada4533 459 Pfam PF01569 PAP2 superfamily 220 332 8.7E-20 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_20895 34ce28f4960483fb63a944572ada4533 459 PRINTS PR00502 NUDIX hydrolase family signature 46 60 7.6E-6 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_20895 34ce28f4960483fb63a944572ada4533 459 PRINTS PR00502 NUDIX hydrolase family signature 60 75 7.6E-6 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_17390 2cb15eff4c63e1de5bf6523b516685e3 383 Gene3D G3DSA:1.10.3720.10 159 347 7.0E-38 T 14-10-2018 IPR035906 MetI-like superfamily RY45_17390 2cb15eff4c63e1de5bf6523b516685e3 383 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 182 340 5.4E-26 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_17390 2cb15eff4c63e1de5bf6523b516685e3 383 SUPERFAMILY SSF161098 161 343 1.7E-43 T 14-10-2018 IPR035906 MetI-like superfamily RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 Pfam PF00158 Sigma-54 interaction domain 133 295 2.9E-66 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 215 230 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 Gene3D G3DSA:3.40.50.300 120 300 3.9E-63 T 14-10-2018 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 Gene3D G3DSA:1.10.8.60 301 375 3.1E-24 T 14-10-2018 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 Gene3D G3DSA:1.10.10.60 376 444 6.2E-11 T 14-10-2018 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 SUPERFAMILY SSF52540 133 370 2.15E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 Pfam PF00072 Response regulator receiver domain 6 115 4.1E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 SUPERFAMILY SSF52172 1 174 4.27E-43 T 14-10-2018 IPR011006 CheY-like superfamily RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 SMART SM00382 149 293 5.0E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 Pfam PF02954 Bacterial regulatory protein, Fis family 398 437 5.0E-12 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 SUPERFAMILY SSF46689 342 437 1.57E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 SMART SM00448 4 115 3.4E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 342 351 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_08560 b21ef4f8fd9189270a8fca5a1673e29d 447 Gene3D G3DSA:3.40.50.2300 1 119 2.7E-35 T 14-10-2018 RY45_03085 191fc8561106a2be9a6e6e31505c95d8 286 Pfam PF00378 Enoyl-CoA hydratase/isomerase 32 280 4.1E-79 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RY45_03085 191fc8561106a2be9a6e6e31505c95d8 286 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 16 285 55.75 T 14-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 RY45_03085 191fc8561106a2be9a6e6e31505c95d8 286 SUPERFAMILY SSF52096 18 281 1.71E-79 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_03085 191fc8561106a2be9a6e6e31505c95d8 286 Gene3D G3DSA:3.90.226.10 2 223 1.2E-85 T 14-10-2018 RY45_03085 191fc8561106a2be9a6e6e31505c95d8 286 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 124 144 - T 14-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RY45_03085 191fc8561106a2be9a6e6e31505c95d8 286 Gene3D G3DSA:1.10.12.10 224 274 2.9E-31 T 14-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RY45_03085 191fc8561106a2be9a6e6e31505c95d8 286 TIGRFAM TIGR01929 menB: naphthoate synthase 23 282 1.7E-146 T 14-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 Gene3D G3DSA:3.90.550.10 2 224 6.3E-68 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 1.2E-6 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 263 296 5.0E-6 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 Gene3D G3DSA:2.160.10.10 225 453 4.0E-69 T 14-10-2018 RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 SUPERFAMILY SSF53448 1 249 7.85E-67 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 400 428 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 271 299 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 452 2.4E-200 T 14-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 SUPERFAMILY SSF51161 251 435 1.48E-48 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 Pfam PF12804 MobA-like NTP transferase domain 5 129 1.5E-24 T 14-10-2018 IPR025877 MobA-like NTP transferase RY45_22115 e43ab2d4e865dd725ede80753be21cd8 453 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.576 T 14-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 RY45_21840 86a6957b532da435e08d19b29052ea22 504 Gene3D G3DSA:3.30.230.10 2 167 1.3E-10 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_21840 86a6957b532da435e08d19b29052ea22 504 SMART SM00382 209 371 1.0E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_21840 86a6957b532da435e08d19b29052ea22 504 Pfam PF01078 Magnesium chelatase, subunit ChlI 189 390 1.1E-93 T 14-10-2018 IPR000523 Magnesium chelatase ChlI domain RY45_21840 86a6957b532da435e08d19b29052ea22 504 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 492 9.8E-31 T 14-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain RY45_21840 86a6957b532da435e08d19b29052ea22 504 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 9.9E-47 T 14-10-2018 RY45_21840 86a6957b532da435e08d19b29052ea22 504 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 288 302 1.0E-5 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 RY45_21840 86a6957b532da435e08d19b29052ea22 504 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 316 329 1.0E-5 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 RY45_21840 86a6957b532da435e08d19b29052ea22 504 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 208 223 1.0E-5 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 RY45_21840 86a6957b532da435e08d19b29052ea22 504 Gene3D G3DSA:3.40.50.300 190 496 2.1E-59 T 14-10-2018 RY45_21840 86a6957b532da435e08d19b29052ea22 504 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 492 8.3E-207 T 14-10-2018 IPR004482 Mg chelatase-related protein RY45_21840 86a6957b532da435e08d19b29052ea22 504 SUPERFAMILY SSF52540 189 498 1.61E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21840 86a6957b532da435e08d19b29052ea22 504 SUPERFAMILY SSF54211 8 169 1.78E-33 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_19075 cfdd90904fe6ea3cbd0c9fc01a3b1781 88 ProDom PD068655 ORF26 3'REGION LYS GENE PRECURSOR ORF30 SIGNAL PHAGE 7 87 1.0E-22 T 14-10-2018 IPR024406 Phage tail assembly chaperone TAC-10 RY45_19075 cfdd90904fe6ea3cbd0c9fc01a3b1781 88 Pfam PF10963 Phage tail assembly chaperone 7 88 1.5E-34 T 14-10-2018 IPR024406 Phage tail assembly chaperone TAC-10 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 771 0.0 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 2.6E-56 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 2.6E-56 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 2.6E-56 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 2.6E-56 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 2.6E-56 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Gene3D G3DSA:1.20.58.1480 120 245 3.0E-44 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 1.3E-99 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 SMART SM00382 348 492 6.1E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Gene3D G3DSA:1.10.8.60 491 584 2.0E-33 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Gene3D G3DSA:3.40.50.300 314 490 4.6E-62 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 SUPERFAMILY SSF54211 595 771 5.69E-61 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 PIRSF PIRSF001174 1 775 0.0 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Hamap MF_01973 Lon protease [lon]. 11 772 71.661 T 14-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 14-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 1.0E-17 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 SUPERFAMILY SSF88697 10 201 1.42E-50 T 14-10-2018 IPR015947 PUA-like superfamily RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 SMART SM00464 10 202 6.5E-78 T 14-10-2018 IPR003111 Lon, substrate-binding domain RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 1.0E-42 T 14-10-2018 IPR003111 Lon, substrate-binding domain RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Gene3D G3DSA:3.30.230.10 585 772 8.6E-88 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 Gene3D G3DSA:2.30.130.40 1 117 2.0E-36 T 14-10-2018 RY45_12605 bccfe1317391a8d32a86362c38c5463a 784 SUPERFAMILY SSF52540 315 587 2.89E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21960 99251877d07bc60695ebf60a6c134b9e 403 Pfam PF04932 O-Antigen ligase 182 336 1.0E-17 T 14-10-2018 IPR007016 O-antigen ligase-related RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 SUPERFAMILY SSF47819 535 610 1.31E-26 T 14-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 SMART SM00956 414 517 8.3E-55 T 14-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Pfam PF09382 RQC domain 409 519 1.8E-40 T 14-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 19 606 2.1E-250 T 14-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 SUPERFAMILY SSF52540 208 461 1.59E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Pfam PF16124 RecQ zinc-binding 346 407 1.6E-16 T 14-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Pfam PF00270 DEAD/DEAH box helicase 31 189 1.5E-18 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 SMART SM00341 535 611 5.1E-22 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 SUPERFAMILY SSF52540 13 201 1.92E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 SMART SM00487 25 221 5.5E-31 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Gene3D G3DSA:1.10.10.10 344 525 1.9E-54 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 SMART SM00490 253 334 8.0E-30 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Gene3D G3DSA:3.40.50.300 212 343 2.9E-44 T 14-10-2018 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Gene3D G3DSA:1.10.150.80 532 611 4.1E-27 T 14-10-2018 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 19 467 8.8E-180 T 14-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Pfam PF00271 Helicase conserved C-terminal domain 228 333 1.2E-19 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Gene3D G3DSA:3.40.50.300 12 211 7.5E-79 T 14-10-2018 RY45_21525 637cfd5f831bc6767a8f5db9a13f2ac0 611 Pfam PF00570 HRDC domain 539 605 1.0E-23 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 ProSitePatterns PS00194 Thioredoxin family active site. 59 77 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 Gene3D G3DSA:2.20.28.140 2 37 1.2E-14 T 14-10-2018 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 PIRSF PIRSF000077 38 142 1.8E-30 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 Pfam PF00085 Thioredoxin 45 138 1.7E-25 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 TIGRFAM TIGR01068 thioredoxin: thioredoxin 46 140 8.3E-33 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 SUPERFAMILY SSF52833 41 140 1.56E-33 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_10740 c287723a0048558abe1c62f5397b62ee 142 PRINTS PR00421 Thioredoxin family signature 106 117 9.2E-8 T 14-10-2018 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 PRINTS PR00421 Thioredoxin family signature 66 75 9.2E-8 T 14-10-2018 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 PRINTS PR00421 Thioredoxin family signature 58 66 9.2E-8 T 14-10-2018 RY45_10740 c287723a0048558abe1c62f5397b62ee 142 Gene3D G3DSA:3.40.30.10 41 141 3.8E-30 T 14-10-2018 RY45_17805 79249643545d34981d5489384c36ee4b 290 Pfam PF02666 Phosphatidylserine decarboxylase 65 284 9.5E-58 T 14-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 RY45_17805 79249643545d34981d5489384c36ee4b 290 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 12 287 45.211 T 14-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 RY45_17805 79249643545d34981d5489384c36ee4b 290 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 52 284 5.1E-76 T 14-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 RY45_15510 e594d7ae6f0de2426bb6bc5b1ced639c 156 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 21 58 1.9E-9 T 14-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 RY45_15510 e594d7ae6f0de2426bb6bc5b1ced639c 156 SUPERFAMILY SSF54534 23 155 2.55E-49 T 14-10-2018 RY45_15510 e594d7ae6f0de2426bb6bc5b1ced639c 156 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 65 153 1.0E-26 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RY45_15510 e594d7ae6f0de2426bb6bc5b1ced639c 156 Gene3D G3DSA:3.10.50.40 18 156 2.5E-53 T 14-10-2018 RY45_07440 d3af875260e199607ad982720fbf3da7 376 Pfam PF08007 Cupin superfamily protein 9 304 2.8E-95 T 14-10-2018 IPR003347 JmjC domain RY45_07440 d3af875260e199607ad982720fbf3da7 376 Gene3D G3DSA:1.10.10.2510 204 376 5.2E-54 T 14-10-2018 RY45_07440 d3af875260e199607ad982720fbf3da7 376 Gene3D G3DSA:2.60.120.650 1 203 9.9E-80 T 14-10-2018 RY45_07440 d3af875260e199607ad982720fbf3da7 376 SMART SM00558 87 214 2.1E-5 T 14-10-2018 IPR003347 JmjC domain RY45_07440 d3af875260e199607ad982720fbf3da7 376 SUPERFAMILY SSF51197 5 291 2.75E-75 T 14-10-2018 RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 SUPERFAMILY SSF116726 409 485 9.16E-12 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 574 52.31 T 14-10-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 Gene3D G3DSA:3.30.465.10 492 568 2.8E-6 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 Gene3D G3DSA:3.30.70.1450 408 484 2.7E-12 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 SUPERFAMILY SSF56176 498 569 3.0E-8 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 Pfam PF00999 Sodium/hydrogen exchanger family 15 385 3.8E-54 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 SMART SM01091 493 571 5.6E-14 T 14-10-2018 IPR005170 Transporter-associated domain RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 Pfam PF03471 Transporter associated domain 496 569 1.2E-9 T 14-10-2018 IPR005170 Transporter-associated domain RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 Gene3D G3DSA:1.20.1530.20 7 392 1.2E-17 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily RY45_08045 b937bdc61f0376b56e2f5a3b5aeb2538 575 Pfam PF02080 TrkA-C domain 420 484 8.2E-11 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_01925 ea3b01aa74c327bee100d6e188656122 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.129 T 14-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RY45_01925 ea3b01aa74c327bee100d6e188656122 166 SUPERFAMILY SSF54211 79 158 5.31E-27 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_01925 ea3b01aa74c327bee100d6e188656122 166 SUPERFAMILY SSF54768 9 76 1.99E-23 T 14-10-2018 RY45_01925 ea3b01aa74c327bee100d6e188656122 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 2.5E-29 T 14-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RY45_01925 ea3b01aa74c327bee100d6e188656122 166 Gene3D G3DSA:3.30.160.20 1 72 1.2E-32 T 14-10-2018 RY45_01925 ea3b01aa74c327bee100d6e188656122 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 9.2E-30 T 14-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RY45_01925 ea3b01aa74c327bee100d6e188656122 166 Gene3D G3DSA:3.30.230.10 74 166 2.3E-36 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_01925 ea3b01aa74c327bee100d6e188656122 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 14-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site RY45_01925 ea3b01aa74c327bee100d6e188656122 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 2.1E-68 T 14-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:2.40.30.170 235 309 1.0E-33 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 SUPERFAMILY SSF111369 118 314 1.12E-19 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:2.40.50.100 116 150 1.2E-6 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:2.40.420.20 90 101 1.2E-6 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 172 386 7.3E-40 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:2.40.50.320 403 473 8.6E-21 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:1.10.287.470 174 191 1.0E-33 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:1.10.287.470 151 163 1.2E-6 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:2.40.50.100 192 234 1.0E-33 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 99 307 6.9E-81 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:2.40.30.170 102 115 1.2E-6 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Gene3D G3DSA:2.40.420.20 313 402 1.1E-21 T 14-10-2018 RY45_15295 48272b77b9bfa9620cc83f0c192ac59c 510 Pfam PF11604 Copper binding periplasmic protein CusF 405 470 3.6E-22 T 14-10-2018 IPR021647 Copper binding periplasmic protein CusF RY45_19665 611b0502819e8831d7efd6084e7a280f 405 SUPERFAMILY SSF53448 5 357 7.27E-69 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_19665 611b0502819e8831d7efd6084e7a280f 405 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 193 203 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_19665 611b0502819e8831d7efd6084e7a280f 405 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 10 29 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_19665 611b0502819e8831d7efd6084e7a280f 405 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 95 103 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_19665 611b0502819e8831d7efd6084e7a280f 405 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 5 377 5.2E-147 T 14-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_19665 611b0502819e8831d7efd6084e7a280f 405 SUPERFAMILY SSF51161 293 403 3.19E-20 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_19665 611b0502819e8831d7efd6084e7a280f 405 Pfam PF00483 Nucleotidyl transferase 6 271 1.4E-63 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RY45_19665 611b0502819e8831d7efd6084e7a280f 405 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 403 47.902 T 14-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_19665 611b0502819e8831d7efd6084e7a280f 405 Gene3D G3DSA:3.90.550.10 2 286 1.9E-80 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_19665 611b0502819e8831d7efd6084e7a280f 405 Gene3D G3DSA:2.160.10.10 287 403 1.8E-36 T 14-10-2018 RY45_09585 879fa45b3c95494daf91ca9f0747ba40 312 SMART SM00530 21 82 0.0025 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_09585 879fa45b3c95494daf91ca9f0747ba40 312 Gene3D G3DSA:1.10.260.40 9 116 1.3E-23 T 14-10-2018 RY45_09585 879fa45b3c95494daf91ca9f0747ba40 312 Pfam PF13413 Helix-turn-helix domain 22 81 1.4E-19 T 14-10-2018 RY45_09585 879fa45b3c95494daf91ca9f0747ba40 312 Pfam PF13464 Domain of unknown function (DUF4115) 236 309 8.7E-22 T 14-10-2018 IPR025194 Domain of unknown function DUF4115 RY45_09585 879fa45b3c95494daf91ca9f0747ba40 312 SUPERFAMILY SSF47413 18 83 1.63E-6 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_10060 ea9e09cce7a930d83b3e7d787d7ff8a1 252 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 4 243 9.2E-94 T 14-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 RY45_10060 ea9e09cce7a930d83b3e7d787d7ff8a1 252 Gene3D G3DSA:1.20.1260.10 92 251 4.1E-57 T 14-10-2018 IPR012347 Ferritin-like RY45_10060 ea9e09cce7a930d83b3e7d787d7ff8a1 252 Gene3D G3DSA:1.20.1260.10 2 70 4.2E-15 T 14-10-2018 IPR012347 Ferritin-like RY45_10060 ea9e09cce7a930d83b3e7d787d7ff8a1 252 PIRSF PIRSF020736 1 248 1.9E-88 T 14-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 RY45_10060 ea9e09cce7a930d83b3e7d787d7ff8a1 252 SUPERFAMILY SSF47240 5 247 1.08E-73 T 14-10-2018 IPR009078 Ferritin-like superfamily RY45_00690 7c6d0d83ab21763d63b4a02511d7df21 250 SUPERFAMILY SSF53335 20 248 7.12E-50 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_00690 7c6d0d83ab21763d63b4a02511d7df21 250 Pfam PF01209 ubiE/COQ5 methyltransferase family 19 249 3.7E-102 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RY45_00690 7c6d0d83ab21763d63b4a02511d7df21 250 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 24 249 2.5E-87 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RY45_00690 7c6d0d83ab21763d63b4a02511d7df21 250 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 157 171 - T 14-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RY45_00690 7c6d0d83ab21763d63b4a02511d7df21 250 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 15 249 39.083 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RY45_00690 7c6d0d83ab21763d63b4a02511d7df21 250 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 35 50 - T 14-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RY45_00690 7c6d0d83ab21763d63b4a02511d7df21 250 Gene3D G3DSA:3.40.50.150 30 250 1.7E-75 T 14-10-2018 RY45_14690 47d9bbe8faf6f8b91e9787b7a45d3d60 244 Gene3D G3DSA:3.30.70.20 50 128 1.6E-10 T 14-10-2018 RY45_14690 47d9bbe8faf6f8b91e9787b7a45d3d60 244 Pfam PF12838 4Fe-4S dicluster domain 56 111 5.6E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14690 47d9bbe8faf6f8b91e9787b7a45d3d60 244 Pfam PF12800 4Fe-4S binding domain 133 151 0.024 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14690 47d9bbe8faf6f8b91e9787b7a45d3d60 244 Pfam PF12800 4Fe-4S binding domain 180 192 0.45 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14690 47d9bbe8faf6f8b91e9787b7a45d3d60 244 SUPERFAMILY SSF54862 56 201 1.0E-26 T 14-10-2018 RY45_14690 47d9bbe8faf6f8b91e9787b7a45d3d60 244 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 4 213 2.5E-77 T 14-10-2018 IPR004494 MauM/NapG ferredoxin-type protein RY45_14690 47d9bbe8faf6f8b91e9787b7a45d3d60 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14690 47d9bbe8faf6f8b91e9787b7a45d3d60 244 Gene3D G3DSA:3.30.70.20 130 215 5.9E-9 T 14-10-2018 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 557 1.9E-104 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 Gene3D G3DSA:3.30.930.10 117 580 1.1E-193 T 14-10-2018 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.2E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 473 489 1.2E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 517 531 1.2E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.2E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 584 2.7E-260 T 14-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 SUPERFAMILY SSF50249 1 105 8.76E-34 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 Pfam PF01336 OB-fold nucleic acid binding domain 19 102 8.6E-16 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 Gene3D G3DSA:2.40.50.140 1 106 1.4E-34 T 14-10-2018 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 583 33.021 T 14-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 SUPERFAMILY SSF55261 289 419 4.14E-46 T 14-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 Pfam PF02938 GAD domain 307 406 2.3E-32 T 14-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 Gene3D G3DSA:3.30.1360.30 271 420 1.1E-193 T 14-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 RY45_08275 422e1555b316d66ff3d2c4b7f074af39 588 SUPERFAMILY SSF55681 108 580 2.3E-105 T 14-10-2018 RY45_10695 92a067afa8dadec96cab7e744daf0137 432 TIGRFAM TIGR00814 stp: serine transporter 27 420 8.5E-164 T 14-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 RY45_10695 92a067afa8dadec96cab7e744daf0137 432 Pfam PF03222 Tryptophan/tyrosine permease family 38 396 1.4E-13 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 Gene3D G3DSA:3.40.190.10 167 265 7.1E-52 T 14-10-2018 RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.0E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 Pfam PF03466 LysR substrate binding domain 94 289 1.3E-19 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 SUPERFAMILY SSF46785 4 83 3.35E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 Gene3D G3DSA:1.10.10.10 1 84 7.2E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 SUPERFAMILY SSF53850 87 290 2.17E-37 T 14-10-2018 RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 Gene3D G3DSA:3.40.190.10 91 289 7.1E-52 T 14-10-2018 RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.3E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.3E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_05690 ac94901cd0ff1ae697b99528b52cfbbc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.3E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 46.533 T 14-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 SMART SM00874 403 471 1.1E-30 T 14-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 SUPERFAMILY SSF55681 467 690 3.38E-55 T 14-10-2018 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Gene3D G3DSA:3.30.70.380 702 795 8.1E-30 T 14-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 SUPERFAMILY SSF54991 697 794 7.32E-30 T 14-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 SUPERFAMILY SSF50249 35 195 1.2E-48 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Gene3D G3DSA:3.50.40.10 197 395 2.6E-78 T 14-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 SUPERFAMILY SSF56037 195 396 4.71E-75 T 14-10-2018 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 2.9E-19 T 14-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 2.1E-274 T 14-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 SUPERFAMILY SSF46955 404 475 4.21E-21 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Gene3D G3DSA:3.30.930.10 486 690 1.7E-63 T 14-10-2018 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Pfam PF01588 Putative tRNA binding domain 45 145 6.8E-26 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Gene3D G3DSA:2.40.50.140 39 154 4.7E-70 T 14-10-2018 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Gene3D G3DSA:3.30.56.10 7 179 4.7E-70 T 14-10-2018 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Pfam PF03483 B3/4 domain 213 385 7.9E-69 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 SMART SM00873 212 385 1.1E-92 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 4.3E-28 T 14-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 SMART SM00896 701 794 1.6E-44 T 14-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RY45_11255 a4d8af22ec045db068a7f1dca233b5c2 795 Gene3D G3DSA:3.30.56.10 401 475 2.9E-26 T 14-10-2018 RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 Gene3D G3DSA:3.30.450.20 125 245 1.2E-19 T 14-10-2018 RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 Gene3D G3DSA:3.30.450.20 8 124 3.1E-19 T 14-10-2018 RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 257 5.9E-13 T 14-10-2018 IPR000014 PAS domain RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 139 2.4E-16 T 14-10-2018 IPR000014 PAS domain RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 Pfam PF08447 PAS fold 44 128 1.7E-13 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 SMART SM00086 213 255 0.009 T 14-10-2018 IPR001610 PAC motif RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 SMART SM00086 94 135 3.2 T 14-10-2018 IPR001610 PAC motif RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 SUPERFAMILY SSF55785 31 135 3.84E-23 T 14-10-2018 IPR035965 PAS domain superfamily RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 SMART SM00091 19 86 0.022 T 14-10-2018 IPR000014 PAS domain RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 SMART SM00091 140 208 0.0016 T 14-10-2018 IPR000014 PAS domain RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 SUPERFAMILY SSF55785 152 252 5.09E-20 T 14-10-2018 IPR035965 PAS domain superfamily RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 294 430 4.9E-35 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 Gene3D G3DSA:1.10.287.950 246 432 6.2E-46 T 14-10-2018 RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 SUPERFAMILY SSF58104 247 429 2.22E-46 T 14-10-2018 RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 SMART SM00283 230 431 5.1E-21 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13645 3ee1600ab4e0dade0d224c40c0c414f8 432 Pfam PF13426 PAS domain 159 254 4.9E-10 T 14-10-2018 IPR000014 PAS domain RY45_05095 a39deb2da08b48075c0122ec005b1cf5 157 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 10 135 1.0E-40 T 14-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RY45_05095 a39deb2da08b48075c0122ec005b1cf5 157 SUPERFAMILY SSF52540 28 152 1.65E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05095 a39deb2da08b48075c0122ec005b1cf5 157 Gene3D G3DSA:3.40.50.300 2 154 1.6E-47 T 14-10-2018 RY45_05095 a39deb2da08b48075c0122ec005b1cf5 157 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 140 1.5E-47 T 14-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 25 232 2.2E-81 T 14-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 232 2.6E-31 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 Pfam PF04539 Sigma-70 region 3 109 166 6.3E-9 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 Gene3D G3DSA:1.20.140.160 95 235 1.4E-34 T 14-10-2018 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 SUPERFAMILY SSF88946 22 96 9.81E-22 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 SUPERFAMILY SSF88659 154 234 2.43E-15 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 Pfam PF04542 Sigma-70 region 2 25 97 8.5E-16 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 Pfam PF04545 Sigma-70, region 4 181 230 1.2E-11 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 Gene3D G3DSA:1.10.1740.10 12 94 2.6E-24 T 14-10-2018 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 202 228 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_20180 c7125747c3e6a60e733277698b4b5c2a 237 SUPERFAMILY SSF88659 98 164 4.36E-13 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_12820 38993398cab3198a1b9fe47854bd99d3 657 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 159 2.8E-32 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_12820 38993398cab3198a1b9fe47854bd99d3 657 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 42 - T 14-10-2018 IPR010916 TonB box, conserved site RY45_12820 38993398cab3198a1b9fe47854bd99d3 657 Gene3D G3DSA:2.170.130.10 30 163 1.0E-41 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_12820 38993398cab3198a1b9fe47854bd99d3 657 Gene3D G3DSA:2.40.170.20 172 657 5.5E-124 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_12820 38993398cab3198a1b9fe47854bd99d3 657 SUPERFAMILY SSF56935 25 656 8.55E-133 T 14-10-2018 RY45_12820 38993398cab3198a1b9fe47854bd99d3 657 Pfam PF00593 TonB dependent receptor 260 656 2.2E-61 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_09930 298f638d7209456a894086fcee62b171 681 SUPERFAMILY SSF69349 445 626 7.77E-47 T 14-10-2018 RY45_09930 298f638d7209456a894086fcee62b171 681 Gene3D G3DSA:2.30.110.50 21 328 8.6E-94 T 14-10-2018 RY45_09930 298f638d7209456a894086fcee62b171 681 Pfam PF05954 Phage late control gene D protein (GPD) 30 325 2.3E-89 T 14-10-2018 RY45_09930 298f638d7209456a894086fcee62b171 681 Gene3D G3DSA:3.55.50.10 98 189 8.6E-94 T 14-10-2018 RY45_09930 298f638d7209456a894086fcee62b171 681 Gene3D G3DSA:2.40.50.230 360 459 1.7E-41 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RY45_09930 298f638d7209456a894086fcee62b171 681 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 3.2E-148 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RY45_09930 298f638d7209456a894086fcee62b171 681 SUPERFAMILY SSF69279 197 359 3.06E-42 T 14-10-2018 RY45_09930 298f638d7209456a894086fcee62b171 681 SUPERFAMILY SSF69255 367 454 4.97E-33 T 14-10-2018 RY45_09930 298f638d7209456a894086fcee62b171 681 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 524 1.8E-207 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RY45_09930 298f638d7209456a894086fcee62b171 681 SUPERFAMILY SSF69279 14 185 3.46E-56 T 14-10-2018 RY45_09930 298f638d7209456a894086fcee62b171 681 Gene3D G3DSA:3.30.1920.30 221 284 8.6E-94 T 14-10-2018 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Gene3D G3DSA:3.40.228.10 177 704 0.0 T 14-10-2018 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Gene3D G3DSA:3.30.200.210 41 667 0.0 T 14-10-2018 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 23 1.1E-4 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Pfam PF00384 Molybdopterin oxidoreductase 98 570 4.1E-94 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 SUPERFAMILY SSF53706 38 701 1.96E-207 T 14-10-2018 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Gene3D G3DSA:3.40.50.740 98 624 0.0 T 14-10-2018 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 2 24 2.5E-5 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_14695 e5a5c3e193679ae475bace43dd185917 829 SUPERFAMILY SSF50692 689 829 6.22E-44 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RY45_14695 e5a5c3e193679ae475bace43dd185917 829 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 46 63 - T 14-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Gene3D G3DSA:2.40.40.20 705 829 2.3E-49 T 14-10-2018 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 SMART SM00926 41 95 2.9E-14 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 42 94 2.6E-17 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 829 0.0 T 14-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Pfam PF01568 Molydopterin dinucleotide binding domain 715 823 5.0E-28 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RY45_14695 e5a5c3e193679ae475bace43dd185917 829 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 829 32.831 T 14-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 RY45_21935 869e1b4a860c9533cf977c7638fe924b 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 7.7E-35 T 14-10-2018 IPR013551 Domain of unknown function DUF1732 RY45_21935 869e1b4a860c9533cf977c7638fe924b 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 1.5E-115 T 14-10-2018 IPR005229 Conserved hypothetical protein CHP00255 RY45_21935 869e1b4a860c9533cf977c7638fe924b 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 2.3E-41 T 14-10-2018 IPR013527 YicC-like, N-terminal RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 Gene3D G3DSA:3.40.50.920 539 663 3.4E-42 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 5.2E-167 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 Gene3D G3DSA:3.40.50.970 2 326 4.1E-132 T 14-10-2018 RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 Pfam PF02780 Transketolase, C-terminal domain 541 656 4.5E-17 T 14-10-2018 IPR033248 Transketolase, C-terminal domain RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 SUPERFAMILY SSF52922 534 662 8.9E-43 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 SUPERFAMILY SSF52518 5 329 4.72E-121 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 Pfam PF02779 Transketolase, pyrimidine binding domain 354 525 5.6E-47 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 SMART SM00861 355 526 8.4E-69 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 ProSitePatterns PS00802 Transketolase signature 2. 468 484 - T 14-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 662 0.0 T 14-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 SUPERFAMILY SSF52518 347 528 1.74E-69 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_16105 0f69dedc4928d0a0e1000eccdc6bd8cd 663 Gene3D G3DSA:3.40.50.970 327 538 1.0E-84 T 14-10-2018 RY45_12670 9fbe1c2af940b8d0fa87c2d1f2688760 305 Pfam PF00892 EamA-like transporter family 152 282 2.2E-18 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12670 9fbe1c2af940b8d0fa87c2d1f2688760 305 Pfam PF00892 EamA-like transporter family 9 137 2.2E-22 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12670 9fbe1c2af940b8d0fa87c2d1f2688760 305 SUPERFAMILY SSF103481 38 140 1.19E-15 T 14-10-2018 RY45_12670 9fbe1c2af940b8d0fa87c2d1f2688760 305 SUPERFAMILY SSF103481 188 284 2.62E-15 T 14-10-2018 RY45_02135 80220020fa37daef657cab0d275d6392 209 Pfam PF03602 Conserved hypothetical protein 95 24 199 1.7E-61 T 14-10-2018 RY45_02135 80220020fa37daef657cab0d275d6392 209 SUPERFAMILY SSF53335 24 200 2.65E-54 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_02135 80220020fa37daef657cab0d275d6392 209 PIRSF PIRSF004553 23 203 9.0E-56 T 14-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 RY45_02135 80220020fa37daef657cab0d275d6392 209 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 21 201 7.4E-61 T 14-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 RY45_02135 80220020fa37daef657cab0d275d6392 209 Gene3D G3DSA:3.40.50.150 16 208 9.3E-64 T 14-10-2018 RY45_02135 80220020fa37daef657cab0d275d6392 209 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 136 142 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 PIRSF PIRSF000203 1 507 3.5E-264 T 14-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 14-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 SMART SM01003 4 135 2.2E-74 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RY45_21280 a8008fc3267e0734936976d711a8c34f 508 SUPERFAMILY SSF52283 1 166 2.64E-54 T 14-10-2018 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 507 9.6E-272 T 14-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 Gene3D G3DSA:3.40.50.720 3 364 3.6E-157 T 14-10-2018 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 139 367 1.9E-74 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RY45_21280 a8008fc3267e0734936976d711a8c34f 508 SUPERFAMILY SSF51735 136 316 5.58E-38 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21280 a8008fc3267e0734936976d711a8c34f 508 Gene3D G3DSA:3.40.50.720 135 317 3.6E-157 T 14-10-2018 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 134 4.3E-49 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RY45_21280 a8008fc3267e0734936976d711a8c34f 508 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 424 507 1.0E-36 T 14-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 168 193 - T 14-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 RY45_21280 a8008fc3267e0734936976d711a8c34f 508 SMART SM01002 144 310 4.4E-84 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 SUPERFAMILY SSF56300 27 360 6.88E-72 T 14-10-2018 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 PRINTS PR01607 Apyrase family signature 238 255 6.7E-22 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 PRINTS PR01607 Apyrase family signature 469 492 6.7E-22 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 PRINTS PR01607 Apyrase family signature 303 323 6.7E-22 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 PRINTS PR01607 Apyrase family signature 257 280 6.7E-22 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 PRINTS PR01607 Apyrase family signature 551 570 6.7E-22 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 PRINTS PR01607 Apyrase family signature 28 46 6.7E-22 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 Gene3D G3DSA:3.60.21.10 20 396 3.3E-95 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 SUPERFAMILY SSF55816 399 583 1.7E-28 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 Pfam PF02872 5'-nucleotidase, C-terminal domain 420 577 4.4E-23 T 14-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 Pfam PF00149 Calcineurin-like phosphoesterase 31 274 1.9E-9 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RY45_16275 67845e7a3d1a21e1f48f5403b4ac6de9 663 Gene3D G3DSA:3.90.780.10 397 608 4.5E-34 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 Gene3D G3DSA:1.20.1580.10 90 493 2.9E-244 T 14-10-2018 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 Gene3D G3DSA:3.40.50.300 616 936 7.0E-140 T 14-10-2018 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.944 T 14-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 Gene3D G3DSA:3.40.50.300 5 596 2.9E-244 T 14-10-2018 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 Gene3D G3DSA:1.10.8.280 288 404 2.9E-244 T 14-10-2018 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 924 0.0 T 14-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 SUPERFAMILY SSF52540 613 913 3.76E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 Pfam PF00005 ABC transporter 623 860 1.6E-10 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 Gene3D G3DSA:1.20.1580.10 692 830 7.0E-140 T 14-10-2018 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 Gene3D G3DSA:3.30.190.20 130 239 2.9E-244 T 14-10-2018 RY45_20670 837eadf49fd087432cc6df9d9af57b83 942 SUPERFAMILY SSF52540 5 570 9.73E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11390 2626a0e77fe52ff312218b78c0cc7b10 474 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 14-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_11390 2626a0e77fe52ff312218b78c0cc7b10 474 Gene3D G3DSA:1.20.210.10 2 471 9.9E-206 T 14-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_11390 2626a0e77fe52ff312218b78c0cc7b10 474 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 464 6.0E-230 T 14-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RY45_11390 2626a0e77fe52ff312218b78c0cc7b10 474 SUPERFAMILY SSF81442 10 464 9.68E-122 T 14-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_11390 2626a0e77fe52ff312218b78c0cc7b10 474 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 14 443 6.9E-114 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_04875 fbd40f7a5e4f1f615eb8968fb84f21a3 237 SUPERFAMILY SSF52540 1 222 5.44E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04875 fbd40f7a5e4f1f615eb8968fb84f21a3 237 SMART SM00382 24 207 3.5E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_04875 fbd40f7a5e4f1f615eb8968fb84f21a3 237 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_04875 fbd40f7a5e4f1f615eb8968fb84f21a3 237 Gene3D G3DSA:3.40.50.300 1 236 2.8E-63 T 14-10-2018 RY45_04875 fbd40f7a5e4f1f615eb8968fb84f21a3 237 Pfam PF00005 ABC transporter 19 157 3.6E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_04875 fbd40f7a5e4f1f615eb8968fb84f21a3 237 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 3 212 9.8E-81 T 14-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 SUPERFAMILY SSF54862 153 232 1.93E-18 T 14-10-2018 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 212 223 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 Gene3D G3DSA:3.30.70.20 170 233 6.3E-13 T 14-10-2018 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 PRINTS PR00397 Sirohaem Fe-binding site signature 151 169 4.4E-7 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 PRINTS PR00397 Sirohaem Fe-binding site signature 110 128 4.4E-7 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 110 303 5.2E-20 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 Pfam PF14697 4Fe-4S dicluster domain 175 224 1.3E-9 T 14-10-2018 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 SUPERFAMILY SSF56014 110 327 1.44E-32 T 14-10-2018 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 TIGRFAM TIGR02912 sulfite_red_C: sulfite reductase, subunit C 4 321 1.4E-144 T 14-10-2018 IPR014261 Sulphite reductase, subunit C RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 SUPERFAMILY SSF55124 18 83 4.42E-16 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 Gene3D G3DSA:3.90.480.20 5 98 1.7E-10 T 14-10-2018 RY45_13380 8b052ca67cda88c2c3a4d41078e4f9e3 336 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 23 82 8.8E-14 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_18915 c05567c69899bf89ae03480997da2821 450 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 377 408 - T 14-10-2018 IPR030390 RNA methyltransferase TrmA, active site RY45_18915 c05567c69899bf89ae03480997da2821 450 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 429 439 - T 14-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site RY45_18915 c05567c69899bf89ae03480997da2821 450 Gene3D G3DSA:3.40.50.150 79 441 5.1E-112 T 14-10-2018 RY45_18915 c05567c69899bf89ae03480997da2821 450 SUPERFAMILY SSF53335 75 444 3.75E-79 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_18915 c05567c69899bf89ae03480997da2821 450 SUPERFAMILY SSF50249 4 59 2.68E-10 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_18915 c05567c69899bf89ae03480997da2821 450 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 267 441 5.3E-16 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RY45_18915 c05567c69899bf89ae03480997da2821 450 Gene3D G3DSA:3.40.1350.30 125 278 5.1E-112 T 14-10-2018 RY45_18915 c05567c69899bf89ae03480997da2821 450 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 15 439 1.1E-131 T 14-10-2018 RY45_18915 c05567c69899bf89ae03480997da2821 450 Pfam PF01938 TRAM domain 4 57 1.6E-7 T 14-10-2018 IPR002792 TRAM domain RY45_18915 c05567c69899bf89ae03480997da2821 450 Gene3D G3DSA:2.40.50.140 4 77 1.3E-15 T 14-10-2018 RY45_15025 e0512a62ca227e7eacce88b9822c1a8d 644 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 575 3.2E-138 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RY45_15025 e0512a62ca227e7eacce88b9822c1a8d 644 PIRSF PIRSF001589 1 644 4.1E-155 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RY45_15025 e0512a62ca227e7eacce88b9822c1a8d 644 Pfam PF00733 Asparagine synthase 252 640 4.9E-119 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RY45_15025 e0512a62ca227e7eacce88b9822c1a8d 644 SUPERFAMILY SSF52402 245 635 1.68E-93 T 14-10-2018 RY45_15025 e0512a62ca227e7eacce88b9822c1a8d 644 Pfam PF13537 Glutamine amidotransferase domain 50 171 5.7E-41 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RY45_15025 e0512a62ca227e7eacce88b9822c1a8d 644 SUPERFAMILY SSF56235 2 228 4.46E-57 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_15025 e0512a62ca227e7eacce88b9822c1a8d 644 Gene3D G3DSA:3.60.20.10 3 187 3.4E-54 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_01765 e3be6d49c61b261331da63de78e7ba00 143 SMART SM00450 40 138 1.4E-23 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_01765 e3be6d49c61b261331da63de78e7ba00 143 Gene3D G3DSA:3.40.250.10 42 143 3.0E-28 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_01765 e3be6d49c61b261331da63de78e7ba00 143 Pfam PF00581 Rhodanese-like domain 48 134 1.9E-17 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_01765 e3be6d49c61b261331da63de78e7ba00 143 SUPERFAMILY SSF52821 19 141 7.73E-32 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_06300 bea07fef982ce77036cb1366e0b23573 293 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 14-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 SUPERFAMILY SSF46934 3 56 1.33E-18 T 14-10-2018 IPR009060 UBA-like superfamily GO:0005515 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 SUPERFAMILY SSF54713 56 146 1.29E-19 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 287 2.4E-114 T 14-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 Hamap MF_00050 Elongation factor Ts [tsf]. 1 287 81.588 T 14-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 SUPERFAMILY SSF54713 150 287 1.7E-53 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 Gene3D G3DSA:1.10.8.10 1 56 1.0E-26 T 14-10-2018 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 Gene3D G3DSA:3.30.479.20 57 148 5.1E-25 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 Pfam PF00889 Elongation factor TS 71 270 5.3E-68 T 14-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 RY45_06300 bea07fef982ce77036cb1366e0b23573 293 Gene3D G3DSA:1.10.286.20 194 233 7.2E-23 T 14-10-2018 RY45_02700 1dc61cccf7df2586c182e06f61f29d44 325 SUPERFAMILY SSF56349 127 313 3.83E-53 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_02700 1dc61cccf7df2586c182e06f61f29d44 325 Gene3D G3DSA:1.10.150.130 24 118 6.9E-18 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal RY45_02700 1dc61cccf7df2586c182e06f61f29d44 325 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 29 317 5.2E-109 T 14-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 RY45_02700 1dc61cccf7df2586c182e06f61f29d44 325 Pfam PF00589 Phage integrase family 132 301 1.2E-49 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_02700 1dc61cccf7df2586c182e06f61f29d44 325 Gene3D G3DSA:1.10.443.10 131 309 6.8E-61 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_02700 1dc61cccf7df2586c182e06f61f29d44 325 SUPERFAMILY SSF47823 29 118 1.59E-9 T 14-10-2018 RY45_02700 1dc61cccf7df2586c182e06f61f29d44 325 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 28 110 5.2E-18 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RY45_02700 1dc61cccf7df2586c182e06f61f29d44 325 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 25 315 56.732 T 14-10-2018 IPR023009 Tyrosine recombinase XerC/XerD RY45_20295 8e5ec669b860caffefd6091af572383a 147 Pfam PF05130 FlgN protein 7 133 2.0E-19 T 14-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 RY45_20295 8e5ec669b860caffefd6091af572383a 147 Gene3D G3DSA:1.20.58.300 6 134 3.6E-21 T 14-10-2018 RY45_20295 8e5ec669b860caffefd6091af572383a 147 SUPERFAMILY SSF140566 8 133 2.88E-25 T 14-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 RY45_19475 fe02881076da961a232b51c61cb626c4 213 SUPERFAMILY SSF55811 26 202 1.9E-45 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_19475 fe02881076da961a232b51c61cb626c4 213 Pfam PF00293 NUDIX domain 60 182 1.6E-9 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_19475 fe02881076da961a232b51c61cb626c4 213 ProSitePatterns PS00893 Nudix box signature. 98 119 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_19475 fe02881076da961a232b51c61cb626c4 213 Gene3D G3DSA:3.90.79.10 5 210 3.1E-62 T 14-10-2018 RY45_19475 fe02881076da961a232b51c61cb626c4 213 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 16 200 9.0E-65 T 14-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 185 3.3E-26 T 14-10-2018 RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 97 178 3.1E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 90 184 4.3E-12 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 SUPERFAMILY SSF56784 1 209 2.94E-51 T 14-10-2018 IPR036412 HAD-like superfamily RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 Gene3D G3DSA:1.10.150.240 15 81 8.7E-26 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 Gene3D G3DSA:3.40.50.1000 82 218 3.6E-30 T 14-10-2018 IPR023214 HAD superfamily RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 1.7E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 1.7E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 1.7E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_12240 399c5df28281024e12967b2ac83ff6cb 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.7E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_13755 b594897d8d8db01c3656413b1ed2e826 339 SUPERFAMILY SSF51556 3 330 7.91E-88 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_13755 b594897d8d8db01c3656413b1ed2e826 339 Hamap MF_01962 Adenine deaminase. 4 316 81.278 T 14-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RY45_13755 b594897d8d8db01c3656413b1ed2e826 339 Gene3D G3DSA:3.20.20.140 1 335 9.5E-103 T 14-10-2018 RY45_13755 b594897d8d8db01c3656413b1ed2e826 339 Pfam PF00962 Adenosine/AMP deaminase 8 323 4.5E-72 T 14-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 RY45_13755 b594897d8d8db01c3656413b1ed2e826 339 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 8 325 8.9E-111 T 14-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 RY45_20175 9ab53c2c8ad099d6dca3f533e936f494 285 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 234 9.8E-13 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_20175 9ab53c2c8ad099d6dca3f533e936f494 285 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 14-10-2018 IPR000540 Flagellar motor protein MotA, conserved site RY45_20175 9ab53c2c8ad099d6dca3f533e936f494 285 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 1.1E-115 T 14-10-2018 IPR022522 Flagellar motor stator, MotA RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 SUPERFAMILY SSF53850 90 290 2.78E-42 T 14-10-2018 RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 Pfam PF03466 LysR substrate binding domain 87 289 1.7E-43 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 SUPERFAMILY SSF46785 1 110 4.26E-26 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 Gene3D G3DSA:3.40.190.290 90 290 3.8E-46 T 14-10-2018 RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 Gene3D G3DSA:1.10.10.10 1 88 4.6E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09820 660d1ffa28d001b230a4e896a6158a13 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.6E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 TIGRFAM TIGR03382 GC_trans_RRR: Myxococcales GC_trans_RRR domain 379 403 0.0034 T 14-10-2018 IPR017756 Transmembrane Gly-Cys-Arg, conserved site RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 Gene3D G3DSA:2.40.10.10 40 139 5.4E-41 T 14-10-2018 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 Gene3D G3DSA:2.40.10.10 28 245 5.4E-41 T 14-10-2018 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 SUPERFAMILY SSF50494 13 259 4.71E-50 T 14-10-2018 IPR009003 Peptidase S1, PA clan RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 Pfam PF00089 Trypsin 28 254 4.8E-33 T 14-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 121 135 2.9E-15 T 14-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 56 71 2.9E-15 T 14-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 208 220 2.9E-15 T 14-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 66 71 - T 14-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 382 403 8.7E-5 T 14-10-2018 IPR020008 GlyGly-CTERM domain RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 SMART SM00020 27 254 2.9E-37 T 14-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RY45_17170 083a5065f0aec5ee190b5706ffe2b554 403 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 209 220 - T 14-10-2018 IPR033116 Serine proteases, trypsin family, serine active site RY45_10245 9266e6572062b75a0d6ef468ca11ea6c 41 SUPERFAMILY SSF57840 1 40 6.67E-14 T 14-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_10245 9266e6572062b75a0d6ef468ca11ea6c 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.906 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_10245 9266e6572062b75a0d6ef468ca11ea6c 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 40 4.4E-8 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_10245 9266e6572062b75a0d6ef468ca11ea6c 41 Pfam PF00444 Ribosomal protein L36 1 40 2.3E-17 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_10245 9266e6572062b75a0d6ef468ca11ea6c 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 3 612 1.3E-219 T 14-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 1.7E-53 T 14-10-2018 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 249 275 1.7E-53 T 14-10-2018 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 227 248 1.7E-53 T 14-10-2018 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 1.7E-53 T 14-10-2018 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 1.7E-53 T 14-10-2018 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 1.7E-53 T 14-10-2018 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 317 329 1.7E-53 T 14-10-2018 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 Pfam PF00361 Proton-conducting membrane transporter 135 427 2.2E-90 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 123 5.6E-21 T 14-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 419 441 6.2E-10 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 60 84 6.2E-10 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 6.2E-10 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RY45_09655 1b0d2c4cd3ddc09531c0fa6f99b12afb 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 267 289 6.2E-10 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RY45_16125 3c8efe8aafc64ad59e302e4995b8f099 243 SUPERFAMILY SSF88697 2 68 2.36E-17 T 14-10-2018 IPR015947 PUA-like superfamily RY45_16125 3c8efe8aafc64ad59e302e4995b8f099 243 Gene3D G3DSA:3.40.1280.10 74 243 8.9E-62 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_16125 3c8efe8aafc64ad59e302e4995b8f099 243 SUPERFAMILY SSF75217 75 242 8.37E-50 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_16125 3c8efe8aafc64ad59e302e4995b8f099 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 3 242 2.3E-80 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RY45_16125 3c8efe8aafc64ad59e302e4995b8f099 243 PIRSF PIRSF015601 3 242 4.3E-52 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RY45_16125 3c8efe8aafc64ad59e302e4995b8f099 243 Gene3D G3DSA:2.40.240.20 1 69 1.5E-23 T 14-10-2018 RY45_16125 3c8efe8aafc64ad59e302e4995b8f099 243 Pfam PF04452 RNA methyltransferase 20 236 9.1E-70 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RY45_09215 590e4d2208b17d4ec72bd02486b3095b 257 SMART SM00079 26 252 0.0015 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RY45_09215 590e4d2208b17d4ec72bd02486b3095b 257 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 49 62 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site RY45_09215 590e4d2208b17d4ec72bd02486b3095b 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 251 2.6E-64 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_09215 590e4d2208b17d4ec72bd02486b3095b 257 SUPERFAMILY SSF53850 1 254 5.36E-71 T 14-10-2018 RY45_09215 590e4d2208b17d4ec72bd02486b3095b 257 Gene3D G3DSA:3.40.190.10 112 209 1.6E-74 T 14-10-2018 RY45_09215 590e4d2208b17d4ec72bd02486b3095b 257 Gene3D G3DSA:3.40.190.10 29 250 1.6E-74 T 14-10-2018 RY45_09215 590e4d2208b17d4ec72bd02486b3095b 257 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 5 250 2.1E-81 T 14-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 RY45_09215 590e4d2208b17d4ec72bd02486b3095b 257 SMART SM00062 26 253 1.6E-66 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_03520 3cb11e582e92b12f9ae90facb2b37f4c 447 SUPERFAMILY SSF55486 23 236 1.56E-25 T 14-10-2018 RY45_03520 3cb11e582e92b12f9ae90facb2b37f4c 447 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 41 213 6.9E-22 T 14-10-2018 RY45_03520 3cb11e582e92b12f9ae90facb2b37f4c 447 Gene3D G3DSA:3.40.390.10 20 226 9.9E-13 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 Gene3D G3DSA:3.30.420.40 3 253 8.9E-111 T 14-10-2018 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 450 1.3E-60 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 137 149 - T 14-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 Gene3D G3DSA:3.30.420.40 254 500 1.1E-91 T 14-10-2018 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 252 2.5E-86 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 362 382 - T 14-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 PIRSF PIRSF000538 5 500 1.1E-179 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 6 496 1.3E-228 T 14-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 SUPERFAMILY SSF53067 6 255 2.59E-95 T 14-10-2018 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 SUPERFAMILY SSF53067 255 496 6.69E-85 T 14-10-2018 RY45_09025 e024d360408f4458cb2f6558e0a87e0e 500 Hamap MF_00186 Glycerol kinase [glpK]. 5 497 59.307 T 14-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 3.8E-52 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 3.8E-52 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 3.8E-52 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 3.8E-52 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 3.8E-52 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 Gene3D G3DSA:3.40.50.620 1 160 2.7E-58 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 Pfam PF01467 Cytidylyltransferase-like 6 134 2.0E-22 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 78 0.003 T 14-10-2018 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 64 2.4E-19 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 36.715 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 2.8E-62 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RY45_01125 76ce258a68d501212f4b5e0e354a2475 160 SUPERFAMILY SSF52374 4 157 1.72E-46 T 14-10-2018 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 Pfam PF01264 Chorismate synthase 10 345 2.3E-142 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 37.506 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 Gene3D G3DSA:3.60.150.10 1 361 3.8E-158 T 14-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 PIRSF PIRSF001456 3 361 8.9E-142 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 3.0E-143 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 SUPERFAMILY SSF103263 4 352 1.7E-148 T 14-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_11090 4636030734b7370f8f8468e7323a16b0 362 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 Pfam PF02222 ATP-grasp domain 121 293 5.7E-56 T 14-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 6 391 51.792 T 14-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 Pfam PF01370 NAD dependent epimerase/dehydratase family 17 79 7.1E-5 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 Gene3D G3DSA:3.30.470.20 195 390 2.0E-58 T 14-10-2018 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 Gene3D G3DSA:3.30.1490.20 121 194 3.7E-30 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 12 390 2.0E-181 T 14-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 Gene3D G3DSA:3.40.50.20 1 120 3.7E-51 T 14-10-2018 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 SUPERFAMILY SSF51246 319 389 7.85E-15 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 SUPERFAMILY SSF56059 111 312 3.01E-57 T 14-10-2018 RY45_12235 eef030405d9dcceeb3bd4fbc23ff8eae 392 SUPERFAMILY SSF52440 2 110 6.47E-34 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_04565 2259e76f50477651d9a02ae76c31c9e2 265 SUPERFAMILY SSF100950 85 244 1.0E-33 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_04565 2259e76f50477651d9a02ae76c31c9e2 265 ProSitePatterns PS00894 DeoR-type HTH domain signature. 14 48 - T 14-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RY45_04565 2259e76f50477651d9a02ae76c31c9e2 265 Pfam PF00455 DeoR C terminal sensor domain 86 242 5.5E-55 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain RY45_04565 2259e76f50477651d9a02ae76c31c9e2 265 SUPERFAMILY SSF46785 12 69 2.54E-13 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_04565 2259e76f50477651d9a02ae76c31c9e2 265 Pfam PF08220 DeoR-like helix-turn-helix domain 14 69 3.7E-18 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_04565 2259e76f50477651d9a02ae76c31c9e2 265 SMART SM00420 14 66 2.4E-19 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_04565 2259e76f50477651d9a02ae76c31c9e2 265 SMART SM01134 83 244 2.3E-75 T 14-10-2018 RY45_04565 2259e76f50477651d9a02ae76c31c9e2 265 Gene3D G3DSA:1.10.10.10 2 63 2.3E-9 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 Gene3D G3DSA:1.10.1140.10 347 462 4.9E-61 T 14-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 Gene3D G3DSA:3.40.50.300 78 346 2.3E-112 T 14-10-2018 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 SUPERFAMILY SSF52540 79 350 1.03E-89 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 462 3.7E-259 T 14-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 462 56.48 T 14-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 SMART SM00382 144 329 0.0037 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 75 7.1E-17 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 SUPERFAMILY SSF47917 347 461 7.59E-55 T 14-10-2018 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 SUPERFAMILY SSF50615 1 76 1.36E-23 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 335 344 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 Gene3D G3DSA:2.40.10.170 2 77 2.5E-26 T 14-10-2018 RY45_22125 ca9155d81f39e1f365622513fe2c6210 462 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 344 1.3E-63 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_21970 172f1a99c209d808b6487b1377fba901 318 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 318 49.27 T 14-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 RY45_21970 172f1a99c209d808b6487b1377fba901 318 SUPERFAMILY SSF51735 1 316 5.99E-62 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21970 172f1a99c209d808b6487b1377fba901 318 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 246 3.8E-43 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RY45_21970 172f1a99c209d808b6487b1377fba901 318 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 317 1.6E-135 T 14-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 RY45_21970 172f1a99c209d808b6487b1377fba901 318 Gene3D G3DSA:3.90.25.10 172 300 2.8E-124 T 14-10-2018 RY45_21970 172f1a99c209d808b6487b1377fba901 318 Gene3D G3DSA:3.40.50.720 3 312 2.8E-124 T 14-10-2018 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 Pfam PF01039 Carboxyl transferase domain 95 240 1.9E-15 T 14-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 5.5E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 5.5E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 5.5E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 5.5E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 5.5E-36 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 37.145 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 SUPERFAMILY SSF52096 25 284 5.64E-85 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_14070 53ad262b5211ca2b937442a639efa09f 287 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 282 2.4E-135 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_14070 53ad262b5211ca2b937442a639efa09f 287 Gene3D G3DSA:3.90.226.10 25 284 1.3E-82 T 14-10-2018 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 274 616 3.9E-84 T 14-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 SUPERFAMILY SSF55804 1 146 6.15E-37 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 SUPERFAMILY SSF52794 163 259 3.66E-34 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 Gene3D G3DSA:3.40.50.2300 153 262 2.7E-38 T 14-10-2018 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 Gene3D G3DSA:3.40.930.10 1 148 1.7E-42 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 Pfam PF02378 Phosphotransferase system, EIIC 288 564 8.6E-17 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 5 132 4.5E-40 T 14-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 164 247 2.2E-29 T 14-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 166 255 7.6E-16 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RY45_07495 263df622b3ed681ff9dc4c517a625f82 635 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 147 8.7E-36 T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_05410 89eff899fd7c0db5634608c739545d71 212 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 14-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site RY45_05410 89eff899fd7c0db5634608c739545d71 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 168 184 1.7E-10 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RY45_05410 89eff899fd7c0db5634608c739545d71 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 184 199 1.7E-10 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RY45_05410 89eff899fd7c0db5634608c739545d71 212 Gene3D G3DSA:1.10.10.10 141 209 1.9E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_05410 89eff899fd7c0db5634608c739545d71 212 Pfam PF00027 Cyclic nucleotide-binding domain 23 111 4.2E-22 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_05410 89eff899fd7c0db5634608c739545d71 212 ProSitePatterns PS00042 Crp-type HTH domain signature. 170 193 - T 14-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 RY45_05410 89eff899fd7c0db5634608c739545d71 212 Pfam PF00325 Bacterial regulatory proteins, crp family 168 199 5.4E-15 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RY45_05410 89eff899fd7c0db5634608c739545d71 212 SMART SM00100 2 124 1.7E-24 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_05410 89eff899fd7c0db5634608c739545d71 212 Gene3D G3DSA:2.60.120.10 10 140 5.7E-42 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_05410 89eff899fd7c0db5634608c739545d71 212 SUPERFAMILY SSF51206 8 139 9.03E-33 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like RY45_05410 89eff899fd7c0db5634608c739545d71 212 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 91 - T 14-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site RY45_05410 89eff899fd7c0db5634608c739545d71 212 SMART SM00419 162 210 7.1E-16 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RY45_05410 89eff899fd7c0db5634608c739545d71 212 SUPERFAMILY SSF46785 141 209 1.75E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 Gene3D G3DSA:1.20.1640.10 453 605 2.4E-6 T 14-10-2018 RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 Pfam PF02355 Protein export membrane protein 435 603 7.9E-20 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 Pfam PF13721 SecD export protein N-terminal TM region 2 103 1.3E-36 T 14-10-2018 IPR027398 SecD export protein N-terminal TM domain RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 Gene3D G3DSA:3.30.70.3400 219 439 9.1E-52 T 14-10-2018 RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 SUPERFAMILY SSF82866 412 607 3.92E-41 T 14-10-2018 RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 603 2.0E-147 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 347 596 5.2E-82 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 616 48.062 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 Pfam PF07549 SecD/SecF GG Motif 115 140 2.0E-7 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 Gene3D G3DSA:3.30.1360.200 280 433 9.1E-52 T 14-10-2018 RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 PRINTS PR00702 Acriflavin resistance protein family signature 505 529 1.3E-6 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 PRINTS PR00702 Acriflavin resistance protein family signature 451 474 1.3E-6 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_09480 efddd819412bf11ea6b2dd2f7b0d88f4 617 PRINTS PR00702 Acriflavin resistance protein family signature 580 603 1.3E-6 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 9.6E-29 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 4.3E-19 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 4.3E-19 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 4.3E-19 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 14-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.9E-28 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 Gene3D G3DSA:3.30.1340.10 1 85 5.3E-33 T 14-10-2018 IPR035895 HPr-like superfamily RY45_15680 eaa68b724ed172a5cc95b9d8e1590ed2 85 SUPERFAMILY SSF55594 1 82 1.57E-26 T 14-10-2018 IPR035895 HPr-like superfamily RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 SMART SM00382 360 521 6.6E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 SMART SM00382 27 355 3.4E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 SUPERFAMILY SSF52540 352 511 1.11E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 Gene3D G3DSA:3.40.50.300 339 519 6.9E-35 T 14-10-2018 RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 Pfam PF00005 ABC transporter 353 479 2.9E-15 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 Pfam PF00005 ABC transporter 32 170 1.1E-13 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 Gene3D G3DSA:3.40.50.300 22 271 4.4E-35 T 14-10-2018 RY45_15560 2d515ff26ae5ec4a04ac0a77795ea0ee 523 SUPERFAMILY SSF52540 23 214 2.43E-29 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10840 17ab60643992142567bdee0da6818b09 154 Pfam PF13673 Acetyltransferase (GNAT) domain 47 129 3.1E-15 T 14-10-2018 IPR000182 GNAT domain RY45_10840 17ab60643992142567bdee0da6818b09 154 Gene3D G3DSA:3.40.630.30 1 144 2.5E-36 T 14-10-2018 RY45_10840 17ab60643992142567bdee0da6818b09 154 SUPERFAMILY SSF55729 1 139 6.97E-25 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 Gene3D G3DSA:3.30.870.10 323 500 1.6E-70 T 14-10-2018 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 678 9.1E-262 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 SUPERFAMILY SSF143724 107 315 7.65E-57 T 14-10-2018 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 110 7.8E-31 T 14-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 Gene3D G3DSA:1.20.58.310 9 109 1.3E-34 T 14-10-2018 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 682 27.139 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 Pfam PF13090 Polyphosphate kinase C-terminal domain 332 677 4.8E-146 T 14-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 Gene3D G3DSA:3.30.1840.10 110 308 4.6E-71 T 14-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 SUPERFAMILY SSF56024 501 684 1.68E-71 T 14-10-2018 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 Gene3D G3DSA:3.30.870.10 501 687 2.3E-75 T 14-10-2018 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 PIRSF PIRSF015589 1 689 2.6E-240 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 SUPERFAMILY SSF56024 318 495 3.81E-53 T 14-10-2018 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 Pfam PF02503 Polyphosphate kinase middle domain 120 319 5.7E-41 T 14-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RY45_08535 2b4085ab64d9e10557812ef3e2776271 689 SUPERFAMILY SSF140356 4 105 1.83E-30 T 14-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 RY45_04995 259707cb238837438c90a625e32e3e69 299 Gene3D G3DSA:3.40.190.290 90 291 3.1E-51 T 14-10-2018 RY45_04995 259707cb238837438c90a625e32e3e69 299 Gene3D G3DSA:1.10.10.10 1 88 1.2E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04995 259707cb238837438c90a625e32e3e69 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.6E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04995 259707cb238837438c90a625e32e3e69 299 SUPERFAMILY SSF53850 86 295 7.06E-41 T 14-10-2018 RY45_04995 259707cb238837438c90a625e32e3e69 299 SUPERFAMILY SSF46785 1 86 9.74E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_04995 259707cb238837438c90a625e32e3e69 299 Pfam PF03466 LysR substrate binding domain 87 291 1.4E-39 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_15730 2d9d61c51028fdc5c055b7bb071a340e 142 SUPERFAMILY SSF55729 1 137 1.46E-25 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_15730 2d9d61c51028fdc5c055b7bb071a340e 142 Pfam PF13508 Acetyltransferase (GNAT) domain 47 120 2.4E-15 T 14-10-2018 IPR000182 GNAT domain RY45_15730 2d9d61c51028fdc5c055b7bb071a340e 142 Gene3D G3DSA:3.40.630.30 1 138 3.2E-32 T 14-10-2018 RY45_17680 4ec9736087649686f73df5a1c294c42a 457 Pfam PF01618 MotA/TolQ/ExbB proton channel family 331 436 2.1E-29 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_17680 4ec9736087649686f73df5a1c294c42a 457 PIRSF PIRSF037714 2 457 2.9E-156 T 14-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein RY45_12245 dff11d7b77e274a81274f36495f47ae8 67 Pfam PF14255 Cysteine-rich CPXCG 9 59 1.5E-21 T 14-10-2018 IPR025990 Cysteine-rich CPXCG protein RY45_12245 dff11d7b77e274a81274f36495f47ae8 67 PIRSF PIRSF037225 1 65 5.2E-24 T 14-10-2018 IPR017143 Uncharacterised conserved protein UCP037225 RY45_15010 4d3aab45acfaeeaca0ad759e6afc0617 653 Gene3D G3DSA:3.40.50.720 275 587 4.9E-112 T 14-10-2018 RY45_15010 4d3aab45acfaeeaca0ad759e6afc0617 653 SUPERFAMILY SSF51735 277 535 2.57E-53 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_15010 4d3aab45acfaeeaca0ad759e6afc0617 653 Pfam PF02719 Polysaccharide biosynthesis protein 280 573 1.9E-128 T 14-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RY45_15010 4d3aab45acfaeeaca0ad759e6afc0617 653 Pfam PF13727 CoA-binding domain 67 235 2.8E-11 T 14-10-2018 RY45_15010 4d3aab45acfaeeaca0ad759e6afc0617 653 Gene3D G3DSA:3.40.50.720 138 261 5.7E-32 T 14-10-2018 RY45_15010 4d3aab45acfaeeaca0ad759e6afc0617 653 SUPERFAMILY SSF53335 112 323 4.82E-18 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_02745 37bc789727fef7acdb04d84ea2d33f5d 309 Pfam PF00005 ABC transporter 22 165 1.3E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_02745 37bc789727fef7acdb04d84ea2d33f5d 309 SMART SM00382 30 212 2.8E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_02745 37bc789727fef7acdb04d84ea2d33f5d 309 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_02745 37bc789727fef7acdb04d84ea2d33f5d 309 SUPERFAMILY SSF52540 4 226 2.33E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02745 37bc789727fef7acdb04d84ea2d33f5d 309 Gene3D G3DSA:3.40.50.300 1 240 3.2E-69 T 14-10-2018 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 Gene3D G3DSA:3.30.450.20 82 190 3.2E-23 T 14-10-2018 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 SUPERFAMILY SSF52540 210 447 8.44E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 SUPERFAMILY SSF55785 81 143 7.68E-7 T 14-10-2018 IPR035965 PAS domain superfamily RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 Gene3D G3DSA:1.10.8.60 377 444 6.4E-22 T 14-10-2018 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 467 514 8.7E-29 T 14-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 SMART SM00382 226 370 1.6E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 Gene3D G3DSA:3.30.70.260 1 80 9.2E-29 T 14-10-2018 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 Pfam PF00158 Sigma-54 interaction domain 208 372 2.1E-61 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 419 428 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 Gene3D G3DSA:1.10.10.60 455 514 1.8E-27 T 14-10-2018 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 SUPERFAMILY SSF55021 2 69 2.75E-7 T 14-10-2018 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 SMART SM00091 80 146 5.5E-4 T 14-10-2018 IPR000014 PAS domain RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 SUPERFAMILY SSF46689 456 513 1.3E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10130 02f7042dbd8769efe5b5ec844cedad38 515 Gene3D G3DSA:3.40.50.300 196 376 2.4E-62 T 14-10-2018 RY45_16115 d3cd1a2b18da2f58c4a12206d1e48832 177 SMART SM00731 18 173 6.5E-41 T 14-10-2018 IPR006640 SprT-like RY45_16115 d3cd1a2b18da2f58c4a12206d1e48832 177 Hamap MF_00746 Protein SprT [sprT]. 14 173 37.118 T 14-10-2018 IPR023483 Uncharacterised protein family SprT RY45_16115 d3cd1a2b18da2f58c4a12206d1e48832 177 Pfam PF17283 SprT-like zinc ribbon domain 135 170 1.0E-8 T 14-10-2018 IPR035240 SprT-like, zinc ribbon domain RY45_16115 d3cd1a2b18da2f58c4a12206d1e48832 177 Pfam PF10263 SprT-like family 23 126 1.8E-14 T 14-10-2018 IPR006640 SprT-like RY45_05055 c0e132cd54769419c40d1a0eed6c3a80 266 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 12 266 7.2E-120 T 14-10-2018 IPR004872 Lipoprotein NlpA family RY45_05055 c0e132cd54769419c40d1a0eed6c3a80 266 PIRSF PIRSF002854 1 266 1.8E-100 T 14-10-2018 IPR004872 Lipoprotein NlpA family RY45_05055 c0e132cd54769419c40d1a0eed6c3a80 266 Gene3D G3DSA:3.40.190.10 31 259 4.4E-95 T 14-10-2018 RY45_05055 c0e132cd54769419c40d1a0eed6c3a80 266 Gene3D G3DSA:3.40.190.10 112 216 4.4E-95 T 14-10-2018 RY45_05055 c0e132cd54769419c40d1a0eed6c3a80 266 Pfam PF03180 NLPA lipoprotein 30 266 5.3E-98 T 14-10-2018 IPR004872 Lipoprotein NlpA family RY45_05055 c0e132cd54769419c40d1a0eed6c3a80 266 SUPERFAMILY SSF53850 29 266 1.45E-82 T 14-10-2018 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 Gene3D G3DSA:3.40.50.2300 6 142 1.1E-34 T 14-10-2018 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 SUPERFAMILY SSF46689 364 417 5.73E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 Gene3D G3DSA:3.40.50.300 143 292 2.3E-27 T 14-10-2018 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 Pfam PF02954 Bacterial regulatory protein, Fis family 374 414 1.3E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 SUPERFAMILY SSF52540 144 349 1.45E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 Pfam PF00072 Response regulator receiver domain 11 118 6.0E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 333 342 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 Gene3D G3DSA:1.10.8.60 293 360 5.8E-15 T 14-10-2018 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 SUPERFAMILY SSF52172 8 189 1.07E-38 T 14-10-2018 IPR011006 CheY-like superfamily RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 SMART SM00448 9 120 5.6E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 Pfam PF14532 Sigma-54 interaction domain 146 291 1.1E-18 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_00160 ce297a24c2cad13d4c6b26130828a2ae 425 Gene3D G3DSA:1.10.10.60 364 419 4.8E-12 T 14-10-2018 RY45_01705 7b324ea5b612b3ff2c6ad05680c995a6 302 SUPERFAMILY SSF54637 153 294 3.6E-35 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_01705 7b324ea5b612b3ff2c6ad05680c995a6 302 Gene3D G3DSA:3.40.630.30 3 142 6.1E-29 T 14-10-2018 RY45_01705 7b324ea5b612b3ff2c6ad05680c995a6 302 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 156 295 4.9E-49 T 14-10-2018 IPR012660 Thioesterase, putative RY45_01705 7b324ea5b612b3ff2c6ad05680c995a6 302 SUPERFAMILY SSF55729 2 162 5.15E-30 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_01705 7b324ea5b612b3ff2c6ad05680c995a6 302 Pfam PF00583 Acetyltransferase (GNAT) family 34 121 3.9E-14 T 14-10-2018 IPR000182 GNAT domain RY45_01705 7b324ea5b612b3ff2c6ad05680c995a6 302 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 163 295 1.5E-41 T 14-10-2018 IPR012660 Thioesterase, putative RY45_01705 7b324ea5b612b3ff2c6ad05680c995a6 302 Gene3D G3DSA:3.10.129.10 146 296 1.7E-42 T 14-10-2018 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 2.8E-30 T 14-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 14-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 SUPERFAMILY SSF53383 130 562 2.07E-106 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 3.3E-43 T 14-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 Gene3D G3DSA:3.40.50.2300 1 129 9.4E-49 T 14-10-2018 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 PIRSF PIRSF009393 1 710 2.0E-283 T 14-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 Gene3D G3DSA:3.40.640.10 130 424 2.2E-90 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 SUPERFAMILY SSF55904 567 708 1.29E-41 T 14-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 Gene3D G3DSA:3.90.1150.10 425 594 3.0E-70 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 1.1E-185 T 14-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RY45_06390 a48a4fb2bf90e962942ef197e98aceb6 710 Gene3D G3DSA:3.90.100.10 595 710 1.6E-42 T 14-10-2018 RY45_20680 514a1df064bf1584ded752767caab045 192 SUPERFAMILY SSF50249 4 192 2.64E-61 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_20680 514a1df064bf1584ded752767caab045 192 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 192 3.5E-61 T 14-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RY45_20680 514a1df064bf1584ded752767caab045 192 PIRSF PIRSF002070 127 188 260.0 T 14-10-2018 RY45_20680 514a1df064bf1584ded752767caab045 192 PIRSF PIRSF002070 2 165 3.5E-37 T 14-10-2018 RY45_20680 514a1df064bf1584ded752767caab045 192 Pfam PF00436 Single-strand binding protein family 6 106 1.4E-42 T 14-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RY45_20680 514a1df064bf1584ded752767caab045 192 Gene3D G3DSA:2.40.50.140 1 116 7.0E-50 T 14-10-2018 RY45_20680 514a1df064bf1584ded752767caab045 192 Hamap MF_00984 Single-stranded DNA-binding protein. 6 118 38.753 T 14-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RY45_11705 ff29e836e40e2e144deac4f66363e855 476 SMART SM00283 214 475 1.4E-64 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_11705 ff29e836e40e2e144deac4f66363e855 476 Gene3D G3DSA:1.10.287.950 147 476 6.2E-67 T 14-10-2018 RY45_11705 ff29e836e40e2e144deac4f66363e855 476 SUPERFAMILY SSF58104 166 476 2.09E-69 T 14-10-2018 RY45_11705 ff29e836e40e2e144deac4f66363e855 476 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 261 440 5.2E-40 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_18130 cf3dc5749674b59d80579f31ca701f1b 106 SUPERFAMILY SSF103481 7 104 4.58E-13 T 14-10-2018 RY45_18130 cf3dc5749674b59d80579f31ca701f1b 106 Gene3D G3DSA:1.10.3730.20 1 106 6.3E-17 T 14-10-2018 RY45_18130 cf3dc5749674b59d80579f31ca701f1b 106 Pfam PF00893 Small Multidrug Resistance protein 4 95 6.0E-17 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 SUPERFAMILY SSF55781 12 156 6.98E-8 T 14-10-2018 RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 SMART SM00065 199 345 0.0066 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 SUPERFAMILY SSF55073 385 544 1.02E-44 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 Pfam PF00990 Diguanylate cyclase, GGDEF domain 382 539 1.3E-47 T 14-10-2018 IPR000160 GGDEF domain RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 SUPERFAMILY SSF55781 201 347 5.67E-10 T 14-10-2018 RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 SMART SM00267 369 545 3.6E-68 T 14-10-2018 IPR000160 GGDEF domain RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 378 540 3.7E-46 T 14-10-2018 IPR000160 GGDEF domain RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 Gene3D G3DSA:3.30.70.270 365 543 8.5E-55 T 14-10-2018 RY45_19650 5f8ae34d0a06778d9c09c33294ba0019 546 Gene3D G3DSA:3.30.450.40 182 346 3.5E-9 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_05325 e6654d09b070ce08bc732a1f2993c001 262 SUPERFAMILY SSF52540 7 236 3.22E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05325 e6654d09b070ce08bc732a1f2993c001 262 Pfam PF00005 ABC transporter 23 176 8.6E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_05325 e6654d09b070ce08bc732a1f2993c001 262 Gene3D G3DSA:3.40.50.300 7 261 9.6E-67 T 14-10-2018 RY45_05325 e6654d09b070ce08bc732a1f2993c001 262 SMART SM00382 32 224 1.6E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_05325 e6654d09b070ce08bc732a1f2993c001 262 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 SUPERFAMILY SSF54292 499 604 1.07E-26 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 Pfam PF03476 MOSC N-terminal beta barrel domain 2 116 2.5E-24 T 14-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 SUPERFAMILY SSF52343 381 510 1.83E-32 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_08145 0267bab3661cda156944efcf8178ca4a 604 Pfam PF00970 Oxidoreductase FAD-binding domain 283 381 1.0E-9 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 Pfam PF00175 Oxidoreductase NAD-binding domain 390 490 5.8E-13 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 Gene3D G3DSA:3.40.50.80 384 510 1.6E-29 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_08145 0267bab3661cda156944efcf8178ca4a 604 SUPERFAMILY SSF63380 273 382 3.23E-24 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_08145 0267bab3661cda156944efcf8178ca4a 604 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 530 597 2.3E-12 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 SUPERFAMILY SSF50800 3 262 2.51E-17 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RY45_08145 0267bab3661cda156944efcf8178ca4a 604 Gene3D G3DSA:3.10.20.30 512 604 2.7E-22 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_08145 0267bab3661cda156944efcf8178ca4a 604 Pfam PF03473 MOSC domain 136 260 3.1E-28 T 14-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 Gene3D G3DSA:2.40.30.10 275 381 4.6E-24 T 14-10-2018 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 331 338 5.9E-5 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 477 485 5.9E-5 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 308 318 5.9E-5 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 389 408 5.9E-5 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 555 563 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RY45_08145 0267bab3661cda156944efcf8178ca4a 604 SUPERFAMILY SSF141673 4 131 1.44E-30 T 14-10-2018 RY45_00005 814982848a9558a3afeae716b56c885b 456 SMART SM00382 153 366 2.5E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_00005 814982848a9558a3afeae716b56c885b 456 SMART SM00760 364 433 7.4E-45 T 14-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RY45_00005 814982848a9558a3afeae716b56c885b 456 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 455 34.425 T 14-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RY45_00005 814982848a9558a3afeae716b56c885b 456 Gene3D G3DSA:1.10.8.60 287 357 2.3E-24 T 14-10-2018 RY45_00005 814982848a9558a3afeae716b56c885b 456 Gene3D G3DSA:3.40.50.300 120 286 6.4E-51 T 14-10-2018 RY45_00005 814982848a9558a3afeae716b56c885b 456 Pfam PF00308 Bacterial dnaA protein 122 338 3.3E-99 T 14-10-2018 IPR013317 Chromosomal replication initiator protein DnaA RY45_00005 814982848a9558a3afeae716b56c885b 456 SUPERFAMILY SSF48295 353 455 2.2E-37 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RY45_00005 814982848a9558a3afeae716b56c885b 456 SUPERFAMILY SSF52540 121 332 1.09E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00005 814982848a9558a3afeae716b56c885b 456 Pfam PF11638 DnaA N-terminal domain 4 62 1.3E-19 T 14-10-2018 IPR024633 DnaA N-terminal domain RY45_00005 814982848a9558a3afeae716b56c885b 456 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 365 433 3.8E-32 T 14-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RY45_00005 814982848a9558a3afeae716b56c885b 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 414 433 1.3E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_00005 814982848a9558a3afeae716b56c885b 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 252 279 1.3E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_00005 814982848a9558a3afeae716b56c885b 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 218 232 1.3E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_00005 814982848a9558a3afeae716b56c885b 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 186 200 1.3E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_00005 814982848a9558a3afeae716b56c885b 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 154 174 1.3E-54 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_00005 814982848a9558a3afeae716b56c885b 456 Gene3D G3DSA:1.10.1750.10 363 456 4.0E-39 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RY45_00005 814982848a9558a3afeae716b56c885b 456 ProSitePatterns PS01008 DnaA protein signature. 414 433 - T 14-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RY45_00005 814982848a9558a3afeae716b56c885b 456 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 454 4.7E-187 T 14-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RY45_00005 814982848a9558a3afeae716b56c885b 456 Gene3D G3DSA:3.30.300.180 2 113 2.4E-35 T 14-10-2018 IPR038454 DnaA, N-terminal domain superfamily RY45_15065 d61102d7a3667fd206fde7a4fafcd698 167 SUPERFAMILY SSF53335 2 151 5.52E-18 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_15065 d61102d7a3667fd206fde7a4fafcd698 167 Pfam PF08241 Methyltransferase domain 9 99 5.5E-7 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RY45_15065 d61102d7a3667fd206fde7a4fafcd698 167 Gene3D G3DSA:3.40.50.150 1 166 1.3E-27 T 14-10-2018 RY45_16780 157ba2892408b5934531fa71e12fea2c 367 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 1.8E-136 T 14-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_16780 157ba2892408b5934531fa71e12fea2c 367 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 11 366 28.576 T 14-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_16780 157ba2892408b5934531fa71e12fea2c 367 Pfam PF01098 Cell cycle protein 17 364 8.0E-117 T 14-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_16780 157ba2892408b5934531fa71e12fea2c 367 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 14-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 SUPERFAMILY SSF52540 177 392 3.09E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 Gene3D G3DSA:1.10.8.60 310 393 3.1E-5 T 14-10-2018 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 Gene3D G3DSA:3.30.230.10 399 640 6.8E-92 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 Gene3D G3DSA:3.40.50.300 3 309 8.0E-37 T 14-10-2018 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 508 612 9.6E-8 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 Pfam PF13654 AAA domain 164 396 6.3E-49 T 14-10-2018 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 SUPERFAMILY SSF54211 420 615 6.45E-33 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 565 583 9.7E-11 T 14-10-2018 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 505 524 9.7E-11 T 14-10-2018 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 57 76 9.7E-11 T 14-10-2018 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 422 438 9.7E-11 T 14-10-2018 RY45_11465 bb145e6afe3e2ee2cb106b6b94f8fb86 659 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 535 554 9.7E-11 T 14-10-2018 RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 Pfam PF01047 MarR family 37 95 1.3E-11 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 1.2E-18 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 1.2E-18 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 1.2E-18 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 1.2E-18 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 SMART SM00347 30 131 1.8E-23 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 14-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 Gene3D G3DSA:1.10.10.10 10 147 3.0E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06620 c9a5fae61e0d4f091edb11cd4fb67e09 157 SUPERFAMILY SSF46785 8 146 2.38E-34 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09340 79d85a0b3a14fd1ed5de87bfecaba945 543 SUPERFAMILY SSF58104 231 542 1.83E-72 T 14-10-2018 RY45_09340 79d85a0b3a14fd1ed5de87bfecaba945 543 Gene3D G3DSA:1.10.287.950 211 543 1.0E-74 T 14-10-2018 RY45_09340 79d85a0b3a14fd1ed5de87bfecaba945 543 SMART SM00283 280 541 4.0E-74 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_09340 79d85a0b3a14fd1ed5de87bfecaba945 543 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 170 8.1E-17 T 14-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RY45_09340 79d85a0b3a14fd1ed5de87bfecaba945 543 Pfam PF00672 HAMP domain 216 261 3.8E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_09340 79d85a0b3a14fd1ed5de87bfecaba945 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 507 1.3E-41 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_09340 79d85a0b3a14fd1ed5de87bfecaba945 543 SMART SM00304 211 265 2.2E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 2.6E-14 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Gene3D G3DSA:3.10.20.30 3 62 1.9E-22 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 SUPERFAMILY SSF52954 529 636 2.87E-32 T 14-10-2018 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 SUPERFAMILY SSF55681 243 525 3.19E-99 T 14-10-2018 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Gene3D G3DSA:3.30.980.10 69 222 1.3E-62 T 14-10-2018 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 2.9E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 2.9E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 2.9E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 2.9E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 2.9E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Gene3D G3DSA:3.30.930.10 223 531 2.0E-128 T 14-10-2018 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Pfam PF02824 TGS domain 4 61 3.3E-11 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 2.0E-239 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Gene3D G3DSA:3.30.54.20 130 187 1.3E-62 T 14-10-2018 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 SUPERFAMILY SSF55186 63 241 5.23E-64 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 SMART SM00863 170 219 7.9E-19 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 529 1.0E-48 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Pfam PF03129 Anticodon binding domain 541 629 1.8E-21 T 14-10-2018 IPR004154 Anticodon-binding RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 33.784 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 SUPERFAMILY SSF81271 3 61 1.01E-15 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RY45_11230 80a181f605fd0ea7f0111e8086ac317d 642 Gene3D G3DSA:3.40.50.800 532 642 3.9E-30 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily RY45_20330 689286a07915c651840ac8f8634fb57f 458 SUPERFAMILY SSF46689 350 443 3.94E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_20330 689286a07915c651840ac8f8634fb57f 458 SUPERFAMILY SSF52172 20 185 1.1E-16 T 14-10-2018 IPR011006 CheY-like superfamily RY45_20330 689286a07915c651840ac8f8634fb57f 458 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_20330 689286a07915c651840ac8f8634fb57f 458 Pfam PF00072 Response regulator receiver domain 38 127 1.4E-5 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_20330 689286a07915c651840ac8f8634fb57f 458 SMART SM00382 160 304 4.4E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_20330 689286a07915c651840ac8f8634fb57f 458 SMART SM00448 20 127 0.0045 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_20330 689286a07915c651840ac8f8634fb57f 458 Gene3D G3DSA:1.10.8.60 312 382 4.0E-20 T 14-10-2018 RY45_20330 689286a07915c651840ac8f8634fb57f 458 Pfam PF02954 Bacterial regulatory protein, Fis family 409 443 5.0E-8 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_20330 689286a07915c651840ac8f8634fb57f 458 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_20330 689286a07915c651840ac8f8634fb57f 458 Pfam PF00158 Sigma-54 interaction domain 142 306 7.7E-67 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_20330 689286a07915c651840ac8f8634fb57f 458 Gene3D G3DSA:1.10.10.60 383 454 8.3E-9 T 14-10-2018 RY45_20330 689286a07915c651840ac8f8634fb57f 458 SUPERFAMILY SSF52540 141 378 1.5E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20330 689286a07915c651840ac8f8634fb57f 458 Gene3D G3DSA:3.40.50.300 134 311 1.7E-61 T 14-10-2018 RY45_20330 689286a07915c651840ac8f8634fb57f 458 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_20330 689286a07915c651840ac8f8634fb57f 458 Gene3D G3DSA:3.40.50.2300 23 133 4.6E-9 T 14-10-2018 RY45_15390 778e882493067c393cfe325dde11e24c 554 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 4.7E-171 T 14-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RY45_15390 778e882493067c393cfe325dde11e24c 554 PIRSF PIRSF003128 1 554 5.5E-160 T 14-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RY45_15390 778e882493067c393cfe325dde11e24c 554 Gene3D G3DSA:3.40.50.300 1 224 2.4E-41 T 14-10-2018 RY45_15390 778e882493067c393cfe325dde11e24c 554 SUPERFAMILY SSF52540 1 217 1.6E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15390 778e882493067c393cfe325dde11e24c 554 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 513 5.2E-18 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RY45_15390 778e882493067c393cfe325dde11e24c 554 SUPERFAMILY SSF52540 3 507 1.1E-27 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15390 778e882493067c393cfe325dde11e24c 554 Gene3D G3DSA:3.40.50.300 239 554 3.0E-53 T 14-10-2018 RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 327 491 5.7E-46 T 14-10-2018 IPR000160 GGDEF domain RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 SUPERFAMILY SSF55073 336 495 2.28E-49 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 SMART SM00267 320 493 1.0E-69 T 14-10-2018 IPR000160 GGDEF domain RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 SMART SM00052 501 748 4.3E-75 T 14-10-2018 IPR001633 EAL domain RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 Gene3D G3DSA:3.20.20.450 506 760 3.0E-76 T 14-10-2018 IPR035919 EAL domain superfamily RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 Pfam PF00563 EAL domain 507 743 1.6E-71 T 14-10-2018 IPR001633 EAL domain RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 Pfam PF00990 Diguanylate cyclase, GGDEF domain 331 489 1.4E-50 T 14-10-2018 IPR000160 GGDEF domain RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 SUPERFAMILY SSF141868 506 755 6.15E-72 T 14-10-2018 IPR035919 EAL domain superfamily RY45_21995 3ff9db0f0a511ff3af8f448bec61d180 761 Gene3D G3DSA:3.30.70.270 325 505 3.1E-60 T 14-10-2018 RY45_08265 04d8cc08de132e489cd57e8f9ca52201 249 SUPERFAMILY SSF53335 20 242 9.22E-41 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_08265 04d8cc08de132e489cd57e8f9ca52201 249 Pfam PF13649 Methyltransferase domain 62 158 3.6E-14 T 14-10-2018 RY45_08265 04d8cc08de132e489cd57e8f9ca52201 249 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 4 242 2.7E-110 T 14-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 RY45_08265 04d8cc08de132e489cd57e8f9ca52201 249 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 242 42.117 T 14-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 RY45_08265 04d8cc08de132e489cd57e8f9ca52201 249 Gene3D G3DSA:3.40.50.150 18 247 2.3E-63 T 14-10-2018 RY45_08265 04d8cc08de132e489cd57e8f9ca52201 249 PIRSF PIRSF006325 1 243 1.9E-115 T 14-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 3.7E-71 T 14-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 Gene3D G3DSA:3.30.360.10 149 314 3.3E-156 T 14-10-2018 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 2.5E-40 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 SUPERFAMILY SSF51735 3 166 4.45E-68 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 SMART SM00846 3 150 8.1E-96 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 8.9E-137 T 14-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.2E-47 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 1.2E-47 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 1.2E-47 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 1.2E-47 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 1.2E-47 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 14-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 SUPERFAMILY SSF55347 149 312 6.55E-78 T 14-10-2018 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 Gene3D G3DSA:3.40.50.720 4 326 3.3E-156 T 14-10-2018 RY45_18575 4e22be6a937d0b5f4d64e4847d589260 331 PIRSF PIRSF000149 1 331 1.9E-134 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_05655 69c29eb3d02891fb91d339821190ea29 190 Gene3D G3DSA:2.40.50.180 42 159 7.6E-40 T 14-10-2018 RY45_05655 69c29eb3d02891fb91d339821190ea29 190 Gene3D G3DSA:2.30.30.40 25 158 7.6E-40 T 14-10-2018 RY45_05655 69c29eb3d02891fb91d339821190ea29 190 SMART SM00260 19 164 2.2E-38 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_05655 69c29eb3d02891fb91d339821190ea29 190 SUPERFAMILY SSF50341 17 168 2.49E-37 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_05655 69c29eb3d02891fb91d339821190ea29 190 Pfam PF01584 CheW-like domain 23 165 1.3E-35 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 Pfam PF08245 Mur ligase middle domain 54 190 4.9E-6 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 Pfam PF02875 Mur ligase family, glutamate ligase domain 286 337 7.6E-6 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 14-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 SUPERFAMILY SSF53623 11 284 2.35E-86 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 414 9.9E-98 T 14-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 SUPERFAMILY SSF53244 286 416 9.03E-29 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 Gene3D G3DSA:3.40.1190.10 1 286 1.3E-90 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 PIRSF PIRSF001563 5 419 2.0E-104 T 14-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 RY45_14065 53214ab0b57ab585e2599d118c687b1c 419 Gene3D G3DSA:3.90.190.20 287 418 2.2E-31 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_12630 aa2b1921cb5d4a5636c8a40017ecd80a 196 SUPERFAMILY SSF109604 4 183 1.23E-46 T 14-10-2018 RY45_12630 aa2b1921cb5d4a5636c8a40017ecd80a 196 SMART SM00471 26 151 9.2E-8 T 14-10-2018 IPR003607 HD/PDEase domain RY45_12630 aa2b1921cb5d4a5636c8a40017ecd80a 196 Pfam PF13023 HD domain 11 161 2.4E-17 T 14-10-2018 IPR006674 HD domain RY45_12630 aa2b1921cb5d4a5636c8a40017ecd80a 196 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 183 2.0E-31 T 14-10-2018 RY45_12630 aa2b1921cb5d4a5636c8a40017ecd80a 196 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 195 41.684 T 14-10-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 RY45_12630 aa2b1921cb5d4a5636c8a40017ecd80a 196 Gene3D G3DSA:1.10.3210.10 1 196 3.9E-79 T 14-10-2018 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 692 30.446 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SUPERFAMILY SSF55666 144 234 2.66E-29 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Pfam PF03725 3' exoribonuclease family, domain 2 146 209 5.8E-13 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Pfam PF03725 3' exoribonuclease family, domain 2 459 526 1.2E-4 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SUPERFAMILY SSF50249 619 694 3.51E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SUPERFAMILY SSF46915 237 319 2.51E-17 T 14-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 690 0.0 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SMART SM00322 551 616 1.4E-11 T 14-10-2018 IPR004087 K Homology domain GO:0003676 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Pfam PF00013 KH domain 555 612 1.4E-9 T 14-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Gene3D G3DSA:3.30.230.70 233 548 3.3E-115 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Gene3D G3DSA:2.40.50.140 621 693 6.7E-29 T 14-10-2018 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SUPERFAMILY SSF54211 3 143 1.62E-50 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Gene3D G3DSA:3.30.230.70 1 229 2.0E-79 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SUPERFAMILY SSF54791 553 639 1.74E-22 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SUPERFAMILY SSF54211 292 487 3.09E-47 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SUPERFAMILY SSF55666 449 548 7.43E-28 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Pfam PF00575 S1 RNA binding domain 618 689 1.1E-19 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Pfam PF01138 3' exoribonuclease family, domain 1 323 455 4.3E-23 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Pfam PF01138 3' exoribonuclease family, domain 1 15 143 1.3E-19 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 SMART SM00316 619 689 1.8E-25 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 240 319 1.3E-20 T 14-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 PIRSF PIRSF005499 1 710 6.7E-299 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RY45_17015 3a19dbd58a79d1a56f03e3e48a4d6486 712 Gene3D G3DSA:3.30.1370.10 549 620 1.2E-18 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 SUPERFAMILY SSF88659 514 616 9.16E-26 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 380 605 1.6E-38 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 SUPERFAMILY SSF88946 114 451 4.19E-99 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 SUPERFAMILY SSF88659 457 530 1.14E-20 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 PRINTS PR00046 Major sigma-70 factor signature 432 440 6.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 PRINTS PR00046 Major sigma-70 factor signature 592 603 6.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 PRINTS PR00046 Major sigma-70 factor signature 556 568 6.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 PRINTS PR00046 Major sigma-70 factor signature 577 592 6.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 PRINTS PR00046 Major sigma-70 factor signature 408 421 6.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 617 46.444 T 14-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Pfam PF04545 Sigma-70, region 4 552 605 1.0E-18 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Pfam PF03979 Sigma-70 factor, region 1.1 5 80 5.8E-30 T 14-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 380 616 4.5E-121 T 14-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 577 603 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Pfam PF04542 Sigma-70 region 2 384 453 1.7E-21 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Pfam PF00140 Sigma-70 factor, region 1.2 97 127 1.8E-12 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Gene3D G3DSA:1.10.10.10 457 533 8.3E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Gene3D G3DSA:1.10.10.10 534 618 3.4E-37 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 408 421 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Pfam PF04546 Sigma-70, non-essential region 138 353 8.2E-69 T 14-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Gene3D G3DSA:1.10.220.120 1 64 8.8E-31 T 14-10-2018 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Gene3D G3DSA:1.10.601.10 112 453 3.9E-142 T 14-10-2018 RY45_04670 dbffa7471c6dc8dee758b3f54d0dc508 618 Pfam PF04539 Sigma-70 region 3 463 539 4.3E-29 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RY45_21150 81099a3cac4f4bbbcbdc9056c11c74dd 218 SMART SM00448 1 112 1.8E-37 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_21150 81099a3cac4f4bbbcbdc9056c11c74dd 218 SUPERFAMILY SSF52172 1 181 2.57E-37 T 14-10-2018 IPR011006 CheY-like superfamily RY45_21150 81099a3cac4f4bbbcbdc9056c11c74dd 218 Pfam PF00072 Response regulator receiver domain 3 112 1.6E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_21150 81099a3cac4f4bbbcbdc9056c11c74dd 218 SMART SM00862 145 216 7.0E-26 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_21150 81099a3cac4f4bbbcbdc9056c11c74dd 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 9.6E-24 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_21150 81099a3cac4f4bbbcbdc9056c11c74dd 218 Gene3D G3DSA:3.40.50.2300 1 119 5.1E-40 T 14-10-2018 RY45_21150 81099a3cac4f4bbbcbdc9056c11c74dd 218 Gene3D G3DSA:1.10.10.10 120 218 9.5E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 Gene3D G3DSA:1.10.10.10 1 89 9.2E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.2E-20 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 SUPERFAMILY SSF53850 87 295 1.14E-46 T 14-10-2018 RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 SUPERFAMILY SSF46785 1 86 1.78E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.7E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.7E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.7E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 Pfam PF03466 LysR substrate binding domain 87 289 1.5E-44 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_02065 53dc7bab95e67cf1f638d5ef059eea21 300 Gene3D G3DSA:3.40.190.290 90 290 1.5E-65 T 14-10-2018 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 316 4.5E-9 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 Pfam PF00672 HAMP domain 206 254 3.9E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 Gene3D G3DSA:3.30.565.10 338 463 2.7E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 SUPERFAMILY SSF47384 244 315 6.28E-13 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 1.9E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 443 1.9E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 462 1.9E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 418 1.9E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 SMART SM00388 259 317 8.4E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 463 2.1E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 Gene3D G3DSA:1.10.287.130 210 318 3.1E-20 T 14-10-2018 RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 SUPERFAMILY SSF55874 316 463 8.77E-34 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 SMART SM00387 356 463 1.7E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_20720 a3977fc032fe44384d56aee3d9f9483d 463 SMART SM00304 206 258 1.5E-4 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_06165 cd2ed83407194179bbcf720262114bce 212 Pfam PF12697 Alpha/beta hydrolase family 16 197 5.1E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_06165 cd2ed83407194179bbcf720262114bce 212 SUPERFAMILY SSF53474 15 183 1.0E-21 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_06165 cd2ed83407194179bbcf720262114bce 212 Gene3D G3DSA:3.40.50.1820 14 193 5.5E-25 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_08190 d9c4804fa5f07e4a4a5aeb0209d14690 301 TIGRFAM TIGR01138 cysM: cysteine synthase B 9 296 2.3E-138 T 14-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RY45_08190 d9c4804fa5f07e4a4a5aeb0209d14690 301 Gene3D G3DSA:3.40.50.1100 41 144 1.2E-107 T 14-10-2018 RY45_08190 d9c4804fa5f07e4a4a5aeb0209d14690 301 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 36 54 - T 14-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RY45_08190 d9c4804fa5f07e4a4a5aeb0209d14690 301 TIGRFAM TIGR01136 cysKM: cysteine synthase 11 296 1.1E-117 T 14-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RY45_08190 d9c4804fa5f07e4a4a5aeb0209d14690 301 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 11 285 4.5E-70 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_08190 d9c4804fa5f07e4a4a5aeb0209d14690 301 Gene3D G3DSA:3.40.50.1100 13 292 1.2E-107 T 14-10-2018 RY45_08190 d9c4804fa5f07e4a4a5aeb0209d14690 301 SUPERFAMILY SSF53686 5 296 8.64E-93 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 1.4E-292 T 14-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 SUPERFAMILY SSF52540 3 207 2.98E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 Gene3D G3DSA:3.40.50.300 1 198 1.9E-69 T 14-10-2018 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 Gene3D G3DSA:3.30.70.870 306 590 1.1E-131 T 14-10-2018 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 150 9.7E-26 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 SUPERFAMILY SSF54980 302 387 1.15E-15 T 14-10-2018 IPR035647 EF-G domain III/V-like RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 Gene3D G3DSA:2.40.30.10 199 299 1.4E-31 T 14-10-2018 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 Gene3D G3DSA:2.40.50.250 483 599 1.1E-131 T 14-10-2018 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 Pfam PF00679 Elongation factor G C-terminus 396 476 1.9E-22 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 SUPERFAMILY SSF54980 398 512 1.53E-28 T 14-10-2018 IPR035647 EF-G domain III/V-like RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 Gene3D G3DSA:3.30.70.240 389 482 1.1E-131 T 14-10-2018 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 SUPERFAMILY SSF50447 151 299 5.08E-33 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 Pfam PF00009 Elongation factor Tu GTP binding domain 4 194 1.4E-57 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 PRINTS PR00315 GTP-binding elongation factor signature 71 81 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 PRINTS PR00315 GTP-binding elongation factor signature 87 98 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 PRINTS PR00315 GTP-binding elongation factor signature 7 20 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 PRINTS PR00315 GTP-binding elongation factor signature 51 59 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 PRINTS PR00315 GTP-binding elongation factor signature 123 132 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_01675 bf47cf23c40c4d4f9689b5d0dc412aee 603 Pfam PF03144 Elongation factor Tu domain 2 219 289 1.8E-10 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RY45_16700 ffa3fe4aa82941f7e2947e7e94052b8e 188 Gene3D G3DSA:3.40.50.850 1 188 2.9E-46 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_16700 ffa3fe4aa82941f7e2947e7e94052b8e 188 Pfam PF00857 Isochorismatase family 4 185 6.5E-34 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 RY45_16700 ffa3fe4aa82941f7e2947e7e94052b8e 188 SUPERFAMILY SSF52499 2 186 7.98E-46 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 SUPERFAMILY SSF46458 2 143 8.31E-40 T 14-10-2018 IPR009050 Globin-like superfamily RY45_03755 8855bd236fe4b0c756627e5005bad052 397 Pfam PF00175 Oxidoreductase NAD-binding domain 266 373 4.6E-14 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 SUPERFAMILY SSF52343 258 394 1.07E-35 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_03755 8855bd236fe4b0c756627e5005bad052 397 Hamap MF_01252 Flavohemoprotein [hmp]. 1 397 55.898 T 14-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 PRINTS PR00410 Phenol hydroxylase reductase family signature 359 367 8.3E-9 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 PRINTS PR00410 Phenol hydroxylase reductase family signature 249 258 8.3E-9 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 PRINTS PR00410 Phenol hydroxylase reductase family signature 265 284 8.3E-9 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 PRINTS PR00410 Phenol hydroxylase reductase family signature 185 197 8.3E-9 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 Pfam PF00042 Globin 7 102 7.7E-12 T 14-10-2018 IPR000971 Globin GO:0020037 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 Gene3D G3DSA:3.40.50.80 258 397 1.3E-31 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_03755 8855bd236fe4b0c756627e5005bad052 397 SUPERFAMILY SSF63380 151 255 1.55E-29 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_03755 8855bd236fe4b0c756627e5005bad052 397 Gene3D G3DSA:2.40.30.10 151 256 4.5E-36 T 14-10-2018 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 Gene3D G3DSA:1.10.490.10 1 145 9.4E-52 T 14-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RY45_03755 8855bd236fe4b0c756627e5005bad052 397 Pfam PF00970 Oxidoreductase FAD-binding domain 159 255 3.3E-10 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 ProSitePatterns PS01068 OmpA-like domain. 259 303 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 Gene3D G3DSA:2.40.160.20 21 187 1.3E-25 T 14-10-2018 RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 PRINTS PR01021 OMPA domain signature 272 288 2.9E-19 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 PRINTS PR01021 OMPA domain signature 225 247 2.9E-19 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 PRINTS PR01021 OMPA domain signature 257 272 2.9E-19 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 SUPERFAMILY SSF103088 214 336 5.62E-30 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 Pfam PF00691 OmpA family 224 319 1.9E-18 T 14-10-2018 IPR006665 OmpA-like domain RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 SUPERFAMILY SSF56925 22 186 1.07E-22 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 Pfam PF01389 OmpA-like transmembrane domain 22 191 5.5E-45 T 14-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 RY45_06860 f7c01ac004bc7c3bcadd3ec4cc46a512 344 Gene3D G3DSA:3.30.1330.60 201 344 4.2E-48 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_01065 8a8b363ac5c15355356b56861de9c372 549 Gene3D G3DSA:3.40.50.10490 103 289 1.7E-90 T 14-10-2018 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 Pfam PF00342 Phosphoglucose isomerase 52 541 1.1E-255 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 Gene3D G3DSA:3.40.50.10490 1 102 2.3E-35 T 14-10-2018 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 14-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 8.0E-56 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 8.0E-56 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 8.0E-56 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 8.0E-56 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 8.0E-56 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 8.0E-56 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 Gene3D G3DSA:1.10.1390.10 511 549 3.9E-19 T 14-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 14-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 SUPERFAMILY SSF53697 5 547 1.58E-227 T 14-10-2018 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 Gene3D G3DSA:3.40.50.10490 290 510 2.8E-111 T 14-10-2018 RY45_01065 8a8b363ac5c15355356b56861de9c372 549 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.586 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_08995 48052303b339c0e1234fbb2f78bf56d4 390 SUPERFAMILY SSF103473 3 382 6.28E-64 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_08995 48052303b339c0e1234fbb2f78bf56d4 390 PRINTS PR01035 Tetracycline resistance protein signature 158 178 6.9E-5 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_08995 48052303b339c0e1234fbb2f78bf56d4 390 PRINTS PR01035 Tetracycline resistance protein signature 10 26 6.9E-5 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_08995 48052303b339c0e1234fbb2f78bf56d4 390 PRINTS PR01035 Tetracycline resistance protein signature 40 59 6.9E-5 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_08995 48052303b339c0e1234fbb2f78bf56d4 390 PRINTS PR01035 Tetracycline resistance protein signature 98 119 6.9E-5 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_08995 48052303b339c0e1234fbb2f78bf56d4 390 Gene3D G3DSA:1.20.1250.20 198 385 1.1E-22 T 14-10-2018 RY45_08995 48052303b339c0e1234fbb2f78bf56d4 390 Pfam PF07690 Major Facilitator Superfamily 9 321 4.0E-43 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_08995 48052303b339c0e1234fbb2f78bf56d4 390 Gene3D G3DSA:1.20.1250.20 2 197 5.3E-27 T 14-10-2018 RY45_15880 7f8e75013f802c1a2888e5281424c58e 212 SUPERFAMILY SSF53448 13 194 3.45E-38 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_15880 7f8e75013f802c1a2888e5281424c58e 212 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 12 197 30.053 T 14-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 RY45_15880 7f8e75013f802c1a2888e5281424c58e 212 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 15 195 1.1E-71 T 14-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 RY45_15880 7f8e75013f802c1a2888e5281424c58e 212 Gene3D G3DSA:3.90.550.10 12 202 6.4E-58 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_15880 7f8e75013f802c1a2888e5281424c58e 212 Pfam PF12804 MobA-like NTP transferase domain 16 164 8.2E-37 T 14-10-2018 IPR025877 MobA-like NTP transferase RY45_11035 7b2c0ca1006ba93ec038aa3bdc6083d9 425 Gene3D G3DSA:3.40.50.1820 152 420 2.4E-21 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_11035 7b2c0ca1006ba93ec038aa3bdc6083d9 425 Pfam PF07819 PGAP1-like protein 149 311 4.8E-6 T 14-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 RY45_11035 7b2c0ca1006ba93ec038aa3bdc6083d9 425 SUPERFAMILY SSF53474 146 406 8.7E-21 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_16990 927750a854663e19305c40a143aef9f5 464 Gene3D G3DSA:1.10.275.10 4 137 2.3E-55 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal RY45_16990 927750a854663e19305c40a143aef9f5 464 SUPERFAMILY SSF48557 4 462 8.33E-155 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 RY45_16990 927750a854663e19305c40a143aef9f5 464 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 1.6E-33 T 14-10-2018 IPR000362 Fumarate lyase family RY45_16990 927750a854663e19305c40a143aef9f5 464 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 1.6E-33 T 14-10-2018 IPR000362 Fumarate lyase family RY45_16990 927750a854663e19305c40a143aef9f5 464 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.6E-33 T 14-10-2018 IPR000362 Fumarate lyase family RY45_16990 927750a854663e19305c40a143aef9f5 464 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 1.6E-33 T 14-10-2018 IPR000362 Fumarate lyase family RY45_16990 927750a854663e19305c40a143aef9f5 464 Gene3D G3DSA:1.10.40.30 407 462 2.5E-28 T 14-10-2018 RY45_16990 927750a854663e19305c40a143aef9f5 464 Pfam PF00206 Lyase 11 341 1.2E-110 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal RY45_16990 927750a854663e19305c40a143aef9f5 464 Pfam PF10415 Fumarase C C-terminus 407 460 3.1E-25 T 14-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_16990 927750a854663e19305c40a143aef9f5 464 PRINTS PR00145 Argininosuccinate lyase family signature 174 194 9.1E-5 T 14-10-2018 RY45_16990 927750a854663e19305c40a143aef9f5 464 PRINTS PR00145 Argininosuccinate lyase family signature 316 332 9.1E-5 T 14-10-2018 RY45_16990 927750a854663e19305c40a143aef9f5 464 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RY45_16990 927750a854663e19305c40a143aef9f5 464 Gene3D G3DSA:1.20.200.10 138 406 4.1E-118 T 14-10-2018 RY45_16990 927750a854663e19305c40a143aef9f5 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 90.298 T 14-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_16990 927750a854663e19305c40a143aef9f5 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 460 1.9E-229 T 14-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 1.3E-30 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 Gene3D G3DSA:4.10.520.10 2 39 1.5E-9 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 Gene3D G3DSA:4.10.520.10 40 92 1.5E-29 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 SUPERFAMILY SSF47729 1 91 7.21E-30 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.2E-18 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.2E-18 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.2E-18 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 SMART SM00411 1 91 3.2E-41 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.005 T 14-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RY45_09845 f863565ac6f920d1f654fe49717261e5 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 94 9.3E-48 T 14-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 Gene3D G3DSA:2.60.40.10 23 141 2.0E-42 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 99 116 - T 14-10-2018 IPR018046 Pili assembly chaperone, conserved site RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 24 141 3.2E-39 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 Gene3D G3DSA:2.60.40.10 144 238 4.0E-22 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 164 225 1.0E-15 T 14-10-2018 IPR016148 Pili assembly chaperone, C-terminal RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 SUPERFAMILY SSF49584 149 238 1.18E-21 T 14-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 PRINTS PR00969 Pili chaperone signature 100 117 1.7E-35 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 PRINTS PR00969 Pili chaperone signature 24 33 1.7E-35 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 PRINTS PR00969 Pili chaperone signature 70 91 1.7E-35 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 PRINTS PR00969 Pili chaperone signature 159 174 1.7E-35 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 PRINTS PR00969 Pili chaperone signature 123 138 1.7E-35 T 14-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RY45_03055 3b719dfb5f8ca30e27e90699b2f4fa27 243 SUPERFAMILY SSF49354 19 141 4.19E-38 T 14-10-2018 IPR008962 PapD-like superfamily RY45_03180 93a390aa8625032313f3bedab6eac496 595 SUPERFAMILY SSF51735 398 501 2.12E-8 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_03180 93a390aa8625032313f3bedab6eac496 595 Gene3D G3DSA:3.40.50.720 394 509 6.1E-10 T 14-10-2018 RY45_03180 93a390aa8625032313f3bedab6eac496 595 Pfam PF00999 Sodium/hydrogen exchanger family 9 385 1.9E-36 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RY45_03180 93a390aa8625032313f3bedab6eac496 595 Pfam PF02254 TrkA-N domain 400 501 3.9E-6 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RY45_03180 93a390aa8625032313f3bedab6eac496 595 Gene3D G3DSA:1.20.1530.20 2 392 1.0E-17 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily RY45_10125 3b851d294e45b2d066b15f245a9371c9 112 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 18 110 2.6E-31 T 14-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 RY45_10125 3b851d294e45b2d066b15f245a9371c9 112 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 16 111 22.545 T 14-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 RY45_10125 3b851d294e45b2d066b15f245a9371c9 112 SUPERFAMILY SSF55248 16 111 1.96E-33 T 14-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 RY45_10125 3b851d294e45b2d066b15f245a9371c9 112 Gene3D G3DSA:3.30.1360.20 18 112 6.2E-31 T 14-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 3 21 - T 14-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Gene3D G3DSA:2.20.25.90 1 50 4.5E-12 T 14-10-2018 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Gene3D G3DSA:3.40.50.740 63 534 1.5E-164 T 14-10-2018 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 SMART SM00926 1 51 4.8E-11 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 2 49 1.8E-14 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 SUPERFAMILY SSF50692 551 704 3.62E-34 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Pfam PF01568 Molydopterin dinucleotide binding domain 588 697 2.1E-27 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Gene3D G3DSA:2.40.40.20 584 707 3.3E-28 T 14-10-2018 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Gene3D G3DSA:1.10.10.1100 823 875 2.6E-8 T 14-10-2018 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Gene3D G3DSA:3.40.228.10 128 331 1.5E-164 T 14-10-2018 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 SUPERFAMILY SSF53706 2 563 7.46E-181 T 14-10-2018 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Pfam PF00384 Molybdopterin oxidoreductase 63 477 1.3E-71 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 PIRSF PIRSF036643 1 713 9.2E-136 T 14-10-2018 RY45_17590 8a857d64ce5e121dddfb2b25cfcc5508 880 Pfam PF04324 BFD-like [2Fe-2S] binding domain 823 872 5.8E-11 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_12055 38e7a5812c8cc517aceb7b81471d6d13 185 SMART SM01322 1 176 1.4E-120 T 14-10-2018 IPR009822 YaeQ RY45_12055 38e7a5812c8cc517aceb7b81471d6d13 185 Gene3D G3DSA:3.10.640.10 1 181 1.1E-79 T 14-10-2018 IPR038590 YaeQ superfamily RY45_12055 38e7a5812c8cc517aceb7b81471d6d13 185 PIRSF PIRSF011484 1 179 3.1E-70 T 14-10-2018 IPR009822 YaeQ RY45_12055 38e7a5812c8cc517aceb7b81471d6d13 185 Pfam PF07152 YaeQ protein 1 173 3.6E-76 T 14-10-2018 IPR009822 YaeQ RY45_12055 38e7a5812c8cc517aceb7b81471d6d13 185 SUPERFAMILY SSF52980 2 178 2.52E-72 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RY45_12200 df62302007d8611c318c366f56c68294 290 PIRSF PIRSF012524 6 282 5.2E-72 T 14-10-2018 IPR014464 Conserved virulence factor B RY45_12200 df62302007d8611c318c366f56c68294 290 Pfam PF13509 S1 domain 80 134 5.0E-5 T 14-10-2018 IPR039566 Conserved virulence factor B, S1 domain RY45_12200 df62302007d8611c318c366f56c68294 290 Pfam PF13509 S1 domain 10 69 2.1E-20 T 14-10-2018 IPR039566 Conserved virulence factor B, S1 domain RY45_12200 df62302007d8611c318c366f56c68294 290 Gene3D G3DSA:1.10.10.10 220 281 1.1E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00025 b233b9d42cb2e6ab40051af13b1a1def 125 Gene3D G3DSA:3.30.720.110 66 121 3.3E-23 T 14-10-2018 RY45_00025 b233b9d42cb2e6ab40051af13b1a1def 125 Gene3D G3DSA:3.30.720.120 1 54 1.5E-24 T 14-10-2018 RY45_00025 b233b9d42cb2e6ab40051af13b1a1def 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 116 6.5E-7 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_00025 b233b9d42cb2e6ab40051af13b1a1def 125 PIRSF PIRSF039020 1 122 1.2E-48 T 14-10-2018 IPR026275 Glyoxalase/dioxygenase/EhpR RY45_00025 b233b9d42cb2e6ab40051af13b1a1def 125 SUPERFAMILY SSF54593 7 123 1.3E-22 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 SUPERFAMILY SSF51395 44 424 1.56E-14 T 14-10-2018 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 TIGRFAM TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit 2 1031 0.0 T 14-10-2018 IPR017701 Putative selenate reductase YgfK RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 PRINTS PR00419 Adrenodoxin reductase family signature 554 576 9.2E-16 T 14-10-2018 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 PRINTS PR00419 Adrenodoxin reductase family signature 683 697 9.2E-16 T 14-10-2018 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 PRINTS PR00419 Adrenodoxin reductase family signature 577 590 9.2E-16 T 14-10-2018 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 Gene3D G3DSA:3.50.50.60 551 656 6.2E-28 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 Gene3D G3DSA:3.50.50.60 657 788 2.9E-36 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 554 841 1.7E-36 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 Gene3D G3DSA:1.10.1060.10 451 546 3.1E-22 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 SUPERFAMILY SSF46548 879 968 1.36E-9 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 SUPERFAMILY SSF46548 432 563 1.88E-19 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 SUPERFAMILY SSF51971 553 788 6.47E-44 T 14-10-2018 RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 941 952 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_11990 e2a63adc4b6b9c3651a50e3526379704 1036 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 456 533 1.6E-16 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 RY45_03480 04746b52e1aa08ae2c172d799a4ec2c4 355 Gene3D G3DSA:3.40.50.300 2 250 2.1E-80 T 14-10-2018 RY45_03480 04746b52e1aa08ae2c172d799a4ec2c4 355 SUPERFAMILY SSF52540 3 246 8.65E-88 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03480 04746b52e1aa08ae2c172d799a4ec2c4 355 SUPERFAMILY SSF50331 240 348 1.13E-10 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RY45_03480 04746b52e1aa08ae2c172d799a4ec2c4 355 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_03480 04746b52e1aa08ae2c172d799a4ec2c4 355 Pfam PF12857 TOBE-like domain 288 344 2.8E-11 T 14-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 RY45_03480 04746b52e1aa08ae2c172d799a4ec2c4 355 SMART SM00382 27 214 9.4E-20 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_03480 04746b52e1aa08ae2c172d799a4ec2c4 355 Pfam PF00005 ABC transporter 18 164 5.9E-37 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_03480 04746b52e1aa08ae2c172d799a4ec2c4 355 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 241 2.6E-118 T 14-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 RY45_01845 ed2bc6938daeba895127f7e23cfd7a5f 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 9.4E-66 T 14-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RY45_01845 ed2bc6938daeba895127f7e23cfd7a5f 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 34.196 T 14-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01845 ed2bc6938daeba895127f7e23cfd7a5f 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 1.5E-76 T 14-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01845 ed2bc6938daeba895127f7e23cfd7a5f 201 Gene3D G3DSA:3.40.1370.10 2 201 1.2E-70 T 14-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 RY45_01845 ed2bc6938daeba895127f7e23cfd7a5f 201 SUPERFAMILY SSF52166 10 200 1.2E-73 T 14-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 PRINTS PR00474 Glutamate 5-kinase family signature 75 103 5.6E-54 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 PRINTS PR00474 Glutamate 5-kinase family signature 115 136 5.6E-54 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 PRINTS PR00474 Glutamate 5-kinase family signature 147 174 5.6E-54 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 PRINTS PR00474 Glutamate 5-kinase family signature 41 55 5.6E-54 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 PRINTS PR00474 Glutamate 5-kinase family signature 208 228 5.6E-54 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 SUPERFAMILY SSF53633 4 254 1.7E-68 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_17620 595c9c12eb2229a5b753156a005a9944 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 4 366 1.8E-146 T 14-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 4 262 36.679 T 14-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 206 223 - T 14-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 SUPERFAMILY SSF88697 275 366 3.81E-24 T 14-10-2018 IPR015947 PUA-like superfamily RY45_17620 595c9c12eb2229a5b753156a005a9944 367 Gene3D G3DSA:2.30.130.10 265 367 2.7E-32 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 Pfam PF01472 PUA domain 276 350 1.5E-21 T 14-10-2018 IPR002478 PUA domain GO:0003723 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 SMART SM00359 276 359 3.6E-18 T 14-10-2018 IPR002478 PUA domain GO:0003723 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 Gene3D G3DSA:3.40.1160.10 1 260 3.2E-89 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_17620 595c9c12eb2229a5b753156a005a9944 367 Pfam PF00696 Amino acid kinase family 5 233 4.7E-43 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_17620 595c9c12eb2229a5b753156a005a9944 367 PIRSF PIRSF000729 1 367 7.6E-137 T 14-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 10 1302 0.0 T 14-10-2018 IPR010222 RNA helicase HrpA GO:0004004 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 SMART SM00847 466 565 9.5E-35 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 Gene3D G3DSA:1.20.120.1080 449 559 1.8E-16 T 14-10-2018 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 SMART SM00487 70 254 1.3E-32 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 Pfam PF00271 Helicase conserved C-terminal domain 288 405 4.6E-12 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 SUPERFAMILY SSF52540 69 573 1.41E-111 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 629 705 4.9E-19 T 14-10-2018 IPR011709 Domain of unknown function DUF1605 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 Pfam PF04408 Helicase associated domain (HA2) 468 563 1.4E-15 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 Pfam PF00270 DEAD/DEAH box helicase 77 228 1.3E-9 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 SMART SM00382 87 372 5.6E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 Gene3D G3DSA:3.40.50.300 42 247 6.1E-77 T 14-10-2018 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 Pfam PF11898 Domain of unknown function (DUF3418) 718 1302 2.4E-234 T 14-10-2018 IPR024590 RNA helicase HrpA, C-terminal RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 Gene3D G3DSA:3.40.50.300 248 422 3.0E-54 T 14-10-2018 RY45_11765 04bfb9204ea748b6991157970c6d6a3f 1304 SMART SM00490 306 406 6.6E-16 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_00630 4682984bb0f233be29e11eaacc491d74 611 Pfam PF07715 TonB-dependent Receptor Plug Domain 40 144 1.5E-27 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_00630 4682984bb0f233be29e11eaacc491d74 611 Gene3D G3DSA:2.40.170.20 153 611 1.0E-122 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_00630 4682984bb0f233be29e11eaacc491d74 611 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 2 611 33.222 T 14-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 RY45_00630 4682984bb0f233be29e11eaacc491d74 611 Pfam PF00593 TonB dependent receptor 174 610 3.0E-43 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_00630 4682984bb0f233be29e11eaacc491d74 611 SUPERFAMILY SSF56935 26 610 9.16E-112 T 14-10-2018 RY45_00630 4682984bb0f233be29e11eaacc491d74 611 Gene3D G3DSA:2.170.130.10 23 149 6.1E-35 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 953 987 - T 14-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 486 820 1.1E-92 T 14-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 Pfam PF00924 Mechanosensitive ion channel 881 1078 1.0E-49 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 Gene3D G3DSA:3.30.70.100 992 1084 3.2E-10 T 14-10-2018 RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 Gene3D G3DSA:2.30.30.60 939 988 1.5E-10 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 Pfam PF12795 Mechanosensitive ion channel porin domain 37 263 4.5E-37 T 14-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 SUPERFAMILY SSF82689 992 1089 6.54E-15 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 SUPERFAMILY SSF50182 924 989 1.18E-16 T 14-10-2018 IPR010920 LSM domain superfamily RY45_16530 37aa2d5473a5fc8cbfdbdd88b55aefd5 1092 SUPERFAMILY SSF82861 838 922 4.71E-7 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RY45_19795 1c9ac3889e6743bc8d7ce9788bad9850 328 Gene3D G3DSA:1.20.1420.30 35 310 4.3E-35 T 14-10-2018 RY45_19795 1c9ac3889e6743bc8d7ce9788bad9850 328 Gene3D G3DSA:1.20.58.1130 8 219 4.3E-35 T 14-10-2018 RY45_19795 1c9ac3889e6743bc8d7ce9788bad9850 328 Pfam PF01699 Sodium/calcium exchanger protein 5 155 6.6E-13 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RY45_19795 1c9ac3889e6743bc8d7ce9788bad9850 328 Pfam PF01699 Sodium/calcium exchanger protein 190 299 8.9E-11 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 535 665 5.0E-39 T 14-10-2018 IPR020992 Tail specific protease, C-terminal RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 242 322 1.1E-14 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 SMART SM00228 248 325 1.7E-11 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 SUPERFAMILY SSF52096 172 534 1.06E-65 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 SUPERFAMILY SSF50156 245 327 1.6E-12 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 Gene3D G3DSA:3.90.226.10 327 547 4.1E-53 T 14-10-2018 RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 SMART SM00245 329 530 9.4E-60 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 Gene3D G3DSA:2.30.42.10 238 324 2.1E-14 T 14-10-2018 RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 198 550 6.2E-110 T 14-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RY45_11410 ed251f05c3e9b888fdb3068ab1c80e58 671 Pfam PF03572 Peptidase family S41 359 528 2.0E-48 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RY45_02040 e4753415a99a6764000d8ab73632293a 323 Pfam PF16868 NMT1-like family 32 321 3.8E-88 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RY45_02040 e4753415a99a6764000d8ab73632293a 323 Gene3D G3DSA:3.40.190.10 32 321 1.4E-96 T 14-10-2018 RY45_02040 e4753415a99a6764000d8ab73632293a 323 Gene3D G3DSA:3.40.190.10 119 257 1.4E-96 T 14-10-2018 RY45_02040 e4753415a99a6764000d8ab73632293a 323 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 3 321 7.7E-96 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RY45_02040 e4753415a99a6764000d8ab73632293a 323 SUPERFAMILY SSF53850 28 322 7.41E-76 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 1.9E-158 T 14-10-2018 IPR020823 Cell division protein FtsA RY45_20095 3ed6904607a502dd2855bea43b407668 419 SUPERFAMILY SSF53067 198 384 7.02E-44 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 Gene3D G3DSA:3.90.640.10 235 300 4.1E-116 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 419 29.765 T 14-10-2018 IPR020823 Cell division protein FtsA RY45_20095 3ed6904607a502dd2855bea43b407668 419 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 1.7E-29 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 RY45_20095 3ed6904607a502dd2855bea43b407668 419 SMART SM00842 10 196 1.4E-101 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 RY45_20095 3ed6904607a502dd2855bea43b407668 419 PIRSF PIRSF003101 1 419 2.1E-154 T 14-10-2018 IPR020823 Cell division protein FtsA RY45_20095 3ed6904607a502dd2855bea43b407668 419 SUPERFAMILY SSF53067 8 221 1.86E-63 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 Gene3D G3DSA:3.30.420.40 197 359 4.1E-116 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 Pfam PF14450 Cell division protein FtsA 207 381 9.7E-24 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 Gene3D G3DSA:3.30.1490.110 87 169 4.1E-116 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 Pfam PF14450 Cell division protein FtsA 11 187 1.0E-10 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 Gene3D G3DSA:3.30.420.40 13 379 4.1E-116 T 14-10-2018 RY45_20095 3ed6904607a502dd2855bea43b407668 419 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 208 221 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RY45_01665 26fc7a89f985c3ff2b1636e903f84a86 193 Pfam PF13511 Domain of unknown function (DUF4124) 12 56 1.3E-15 T 14-10-2018 IPR025392 Domain of unknown function DUF4124 RY45_02240 563f101e6de1370c76abcf88876571e3 365 SUPERFAMILY SSF48452 161 342 1.22E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_02240 563f101e6de1370c76abcf88876571e3 365 Pfam PF14559 Tetratricopeptide repeat 190 257 1.8E-8 T 14-10-2018 RY45_02240 563f101e6de1370c76abcf88876571e3 365 Gene3D G3DSA:1.25.40.10 151 274 2.9E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_02240 563f101e6de1370c76abcf88876571e3 365 Gene3D G3DSA:1.25.40.10 275 363 9.4E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 SMART SM01049 36 126 6.2E-25 T 14-10-2018 IPR033480 Single Cache domain 2 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 Pfam PF17200 Single Cache domain 2 39 182 1.9E-25 T 14-10-2018 IPR033480 Single Cache domain 2 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 SUPERFAMILY SSF58104 227 536 2.35E-70 T 14-10-2018 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 Gene3D G3DSA:3.30.450.20 37 181 4.4E-31 T 14-10-2018 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 346 501 1.1E-42 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 11 36 1.8E-23 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 1.8E-23 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 372 399 1.8E-23 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 SMART SM00304 207 259 1.8E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 SMART SM00304 260 312 70.0 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 Gene3D G3DSA:1.10.287.950 206 537 2.3E-70 T 14-10-2018 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 Pfam PF00672 HAMP domain 207 244 1.0E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_03495 20e4916883d3ce3a2fcd68588b505f97 565 SMART SM00283 274 535 6.6E-68 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_11600 b5b11f123c91db326c0bd9bdc738b9c3 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 6.5E-16 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain RY45_11600 b5b11f123c91db326c0bd9bdc738b9c3 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.126 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RY45_11600 b5b11f123c91db326c0bd9bdc738b9c3 78 Gene3D G3DSA:1.10.1200.10 1 75 3.3E-29 T 14-10-2018 IPR036736 ACP-like superfamily RY45_11600 b5b11f123c91db326c0bd9bdc738b9c3 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 1.9E-36 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RY45_11600 b5b11f123c91db326c0bd9bdc738b9c3 78 SUPERFAMILY SSF47336 2 76 5.37E-23 T 14-10-2018 IPR036736 ACP-like superfamily RY45_11600 b5b11f123c91db326c0bd9bdc738b9c3 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site RY45_07620 04f9d265b4e4f29f3e168636d2515dec 312 Pfam PF14338 Mrr N-terminal domain 8 93 1.7E-26 T 14-10-2018 IPR025745 Restriction system protein Mrr-like N-terminal domain RY45_07620 04f9d265b4e4f29f3e168636d2515dec 312 SUPERFAMILY SSF52980 170 289 1.39E-13 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RY45_07620 04f9d265b4e4f29f3e168636d2515dec 312 Pfam PF04471 Restriction endonuclease 167 286 6.0E-36 T 14-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 RY45_07620 04f9d265b4e4f29f3e168636d2515dec 312 Gene3D G3DSA:3.40.91.100 135 304 7.8E-11 T 14-10-2018 RY45_11575 276cf49a988baa178274a62975beebbe 315 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 201 314 1.4E-21 T 14-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_11575 276cf49a988baa178274a62975beebbe 315 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 9 192 5.1E-61 T 14-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_11575 276cf49a988baa178274a62975beebbe 315 SUPERFAMILY SSF52540 8 198 4.9E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11575 276cf49a988baa178274a62975beebbe 315 SUPERFAMILY SSF48019 205 313 1.26E-7 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RY45_11575 276cf49a988baa178274a62975beebbe 315 SMART SM00382 21 163 0.0046 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_11575 276cf49a988baa178274a62975beebbe 315 Pfam PF13177 DNA polymerase III, delta subunit 11 157 2.1E-45 T 14-10-2018 RY45_11575 276cf49a988baa178274a62975beebbe 315 Gene3D G3DSA:3.40.50.300 1 160 6.9E-51 T 14-10-2018 RY45_07965 a2cbf0f2f263f45fd6cb0a35757979a8 144 SUPERFAMILY SSF55961 1 143 1.01E-33 T 14-10-2018 RY45_07965 a2cbf0f2f263f45fd6cb0a35757979a8 144 Gene3D G3DSA:3.30.530.20 2 144 5.6E-36 T 14-10-2018 IPR023393 START-like domain superfamily RY45_07965 a2cbf0f2f263f45fd6cb0a35757979a8 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 13 134 5.4E-30 T 14-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 Gene3D G3DSA:3.40.190.10 99 297 2.1E-66 T 14-10-2018 RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 Gene3D G3DSA:1.10.10.10 9 98 1.8E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 SUPERFAMILY SSF53850 96 302 3.8E-43 T 14-10-2018 RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 3.1E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 3.1E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 3.1E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 Pfam PF03466 LysR substrate binding domain 95 299 4.4E-43 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 1.0E-15 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 SUPERFAMILY SSF46785 5 119 7.68E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10475 ea7585c06bce08090fad591f9c1e6a73 306 Gene3D G3DSA:3.40.190.10 170 274 2.1E-66 T 14-10-2018 RY45_15735 915b1aa72f5a5067455154861767e2f5 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 301 39.5 T 14-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 RY45_15735 915b1aa72f5a5067455154861767e2f5 303 Pfam PF04381 Putative exonuclease, RdgC 1 299 5.9E-128 T 14-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 RY45_19890 e8b87d360a421201938715ae091ec1cd 769 Gene3D G3DSA:2.40.50.230 356 454 1.7E-39 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RY45_19890 e8b87d360a421201938715ae091ec1cd 769 SUPERFAMILY SSF69255 362 449 7.59E-33 T 14-10-2018 RY45_19890 e8b87d360a421201938715ae091ec1cd 769 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 501 4.4E-148 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RY45_19890 e8b87d360a421201938715ae091ec1cd 769 Gene3D G3DSA:3.30.1920.30 221 284 2.7E-91 T 14-10-2018 RY45_19890 e8b87d360a421201938715ae091ec1cd 769 Gene3D G3DSA:3.55.50.10 98 189 2.7E-91 T 14-10-2018 RY45_19890 e8b87d360a421201938715ae091ec1cd 769 SUPERFAMILY SSF69279 197 363 4.93E-40 T 14-10-2018 RY45_19890 e8b87d360a421201938715ae091ec1cd 769 SUPERFAMILY SSF69279 14 185 1.81E-55 T 14-10-2018 RY45_19890 e8b87d360a421201938715ae091ec1cd 769 SUPERFAMILY SSF69349 440 739 2.43E-34 T 14-10-2018 RY45_19890 e8b87d360a421201938715ae091ec1cd 769 Pfam PF05954 Phage late control gene D protein (GPD) 30 327 2.3E-87 T 14-10-2018 RY45_19890 e8b87d360a421201938715ae091ec1cd 769 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 516 4.0E-199 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RY45_19890 e8b87d360a421201938715ae091ec1cd 769 Gene3D G3DSA:2.30.110.50 22 328 2.7E-91 T 14-10-2018 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 PIRSF PIRSF000106 1 516 2.4E-174 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 SUPERFAMILY SSF51735 248 512 1.62E-73 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_06630 b6556e14525b843bea39d410e90bfdba 516 Gene3D G3DSA:3.40.50.10380 2 245 9.7E-91 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 SMART SM00919 248 488 1.2E-88 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 Pfam PF00390 Malic enzyme, N-terminal domain 60 238 1.7E-64 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 PRINTS PR00072 Malic enzyme signature 219 237 1.6E-69 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 PRINTS PR00072 Malic enzyme signature 160 182 1.6E-69 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 PRINTS PR00072 Malic enzyme signature 369 385 1.6E-69 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 PRINTS PR00072 Malic enzyme signature 65 89 1.6E-69 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 PRINTS PR00072 Malic enzyme signature 244 260 1.6E-69 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 PRINTS PR00072 Malic enzyme signature 124 153 1.6E-69 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 PRINTS PR00072 Malic enzyme signature 275 291 1.6E-69 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 Gene3D G3DSA:3.40.50.720 246 516 5.0E-85 T 14-10-2018 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 Pfam PF03949 Malic enzyme, NAD binding domain 248 486 8.1E-72 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 SMART SM01274 59 238 5.0E-91 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RY45_06630 b6556e14525b843bea39d410e90bfdba 516 SUPERFAMILY SSF53223 7 247 1.8E-84 T 14-10-2018 RY45_00820 cad46f9d7a17b4c35bbb92dc890a5792 233 Gene3D G3DSA:3.40.50.300 1 233 2.6E-67 T 14-10-2018 RY45_00820 cad46f9d7a17b4c35bbb92dc890a5792 233 ProDom PD036408 PAPJ PRECURSOR CHAPERONE SIGNAL PERIPLASMIC PIXJ PRSJ PLASMID PRFJ PILUS 106 166 0.007 T 14-10-2018 IPR029224 Pilus-assembly complex, chaperone PapJ RY45_00820 cad46f9d7a17b4c35bbb92dc890a5792 233 SUPERFAMILY SSF52540 1 231 8.95E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00820 cad46f9d7a17b4c35bbb92dc890a5792 233 PIRSF PIRSF039137 1 233 2.6E-104 T 14-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 RY45_00820 cad46f9d7a17b4c35bbb92dc890a5792 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_00820 cad46f9d7a17b4c35bbb92dc890a5792 233 SMART SM00382 26 212 4.7E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_00820 cad46f9d7a17b4c35bbb92dc890a5792 233 Pfam PF00005 ABC transporter 17 161 7.8E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_11570 af1f8479558f80e69c976ce5ad98fc50 259 PIRSF PIRSF005902 1 259 6.8E-81 T 14-10-2018 IPR001130 TatD family GO:0016788 RY45_11570 af1f8479558f80e69c976ce5ad98fc50 259 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RY45_11570 af1f8479558f80e69c976ce5ad98fc50 259 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RY45_11570 af1f8479558f80e69c976ce5ad98fc50 259 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 255 4.7E-90 T 14-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 RY45_11570 af1f8479558f80e69c976ce5ad98fc50 259 Gene3D G3DSA:3.20.20.140 1 259 1.9E-95 T 14-10-2018 RY45_11570 af1f8479558f80e69c976ce5ad98fc50 259 Pfam PF01026 TatD related DNase 4 255 1.0E-77 T 14-10-2018 IPR001130 TatD family GO:0016788 RY45_11570 af1f8479558f80e69c976ce5ad98fc50 259 SUPERFAMILY SSF51556 3 256 1.45E-85 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_08130 a447cb0ce816a6052d015f9b1e4815a9 226 SUPERFAMILY SSF52540 1 215 2.13E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08130 a447cb0ce816a6052d015f9b1e4815a9 226 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 213 29.917 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RY45_08130 a447cb0ce816a6052d015f9b1e4815a9 226 Pfam PF13500 AAA domain 4 208 4.2E-33 T 14-10-2018 RY45_08130 a447cb0ce816a6052d015f9b1e4815a9 226 Gene3D G3DSA:3.40.50.300 2 223 1.7E-65 T 14-10-2018 RY45_08130 a447cb0ce816a6052d015f9b1e4815a9 226 PIRSF PIRSF006755 1 222 1.9E-71 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RY45_08130 a447cb0ce816a6052d015f9b1e4815a9 226 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 177 8.5E-49 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 Gene3D G3DSA:1.10.530.10 300 465 4.5E-32 T 14-10-2018 RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 Gene3D G3DSA:3.40.190.10 36 272 2.1E-40 T 14-10-2018 RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 68 265 6.8E-20 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 322 350 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 SUPERFAMILY SSF53850 36 266 6.19E-25 T 14-10-2018 RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 SUPERFAMILY SSF53955 287 455 2.45E-29 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 Gene3D G3DSA:3.40.190.10 135 239 2.1E-40 T 14-10-2018 RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 Pfam PF01464 Transglycosylase SLT domain 306 414 4.5E-17 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_02105 686db5abd50cce7d98fd58ce89a9831c 474 SMART SM00062 44 282 0.0022 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 ProSitePatterns PS01087 Radical activating enzymes signature. 12 33 - T 14-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 SUPERFAMILY SSF102114 79 269 6.08E-10 T 14-10-2018 RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 Gene3D G3DSA:3.30.70.20 43 84 2.8E-10 T 14-10-2018 RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 Pfam PF13353 4Fe-4S single cluster domain 10 131 5.1E-10 T 14-10-2018 RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 Gene3D G3DSA:3.20.20.70 1 42 1.1E-10 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 Gene3D G3DSA:3.80.30.10 107 264 2.2E-19 T 14-10-2018 RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 TIGRFAM TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family 1 274 4.5E-102 T 14-10-2018 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 Pfam PF04055 Radical SAM superfamily 19 213 1.4E-18 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 69 80 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 PIRSF PIRSF000371 1 274 1.5E-69 T 14-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 RY45_03550 1378af534ce190b0bbcc3fe69ff9d68c 283 SUPERFAMILY SSF54862 20 84 3.91E-14 T 14-10-2018 RY45_03780 041f6e339591519936590f799cd8f056 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 2.0E-29 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03780 041f6e339591519936590f799cd8f056 82 SUPERFAMILY SSF54565 1 76 1.57E-28 T 14-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03780 041f6e339591519936590f799cd8f056 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.097 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03780 041f6e339591519936590f799cd8f056 82 Gene3D G3DSA:3.30.1320.10 1 81 7.7E-31 T 14-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03780 041f6e339591519936590f799cd8f056 82 Pfam PF00886 Ribosomal protein S16 8 68 1.8E-23 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_10515 b9d822c8c2374efb4da212d9f152e3a7 461 Pfam PF01212 Beta-eliminating lyase 46 427 3.6E-95 T 14-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 RY45_10515 b9d822c8c2374efb4da212d9f152e3a7 461 Gene3D G3DSA:3.40.640.10 58 322 1.1E-207 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_10515 b9d822c8c2374efb4da212d9f152e3a7 461 Gene3D G3DSA:3.90.1150.10 6 456 1.1E-207 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_10515 b9d822c8c2374efb4da212d9f152e3a7 461 SUPERFAMILY SSF53383 2 461 1.75E-138 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_10515 b9d822c8c2374efb4da212d9f152e3a7 461 Hamap MF_00544 Tryptophanase [tnaA]. 1 461 106.483 T 14-10-2018 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1 RY45_10515 b9d822c8c2374efb4da212d9f152e3a7 461 PIRSF PIRSF001386 1 461 4.5E-220 T 14-10-2018 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1 RY45_01880 351a8124e6a95dcf4d8d98f5d2c68db7 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.366 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01880 351a8124e6a95dcf4d8d98f5d2c68db7 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 5.2E-23 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01880 351a8124e6a95dcf4d8d98f5d2c68db7 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 14-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01880 351a8124e6a95dcf4d8d98f5d2c68db7 63 SUPERFAMILY SSF46561 1 61 6.67E-22 T 14-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01880 351a8124e6a95dcf4d8d98f5d2c68db7 63 Gene3D G3DSA:1.10.287.310 1 63 4.3E-30 T 14-10-2018 RY45_01880 351a8124e6a95dcf4d8d98f5d2c68db7 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.1E-23 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 Gene3D G3DSA:1.10.10.10 7 94 3.8E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 8.2E-22 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.7E-11 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.7E-11 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.7E-11 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 SUPERFAMILY SSF53850 93 295 1.72E-37 T 14-10-2018 RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 Gene3D G3DSA:3.40.190.10 103 288 3.7E-64 T 14-10-2018 RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 Pfam PF03466 LysR substrate binding domain 91 290 1.3E-36 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 SUPERFAMILY SSF46785 3 85 2.98E-23 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_06160 33a08eb92791f8519f4cca1fb4f3ee81 306 Gene3D G3DSA:3.40.190.10 163 261 3.7E-64 T 14-10-2018 RY45_08555 456ad74290d76baaf0eca51be387047d 344 Gene3D G3DSA:1.10.287.130 110 186 5.3E-12 T 14-10-2018 RY45_08555 456ad74290d76baaf0eca51be387047d 344 Gene3D G3DSA:3.30.450.20 11 109 7.3E-8 T 14-10-2018 RY45_08555 456ad74290d76baaf0eca51be387047d 344 SUPERFAMILY SSF47384 115 188 2.94E-11 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_08555 456ad74290d76baaf0eca51be387047d 344 SUPERFAMILY SSF55874 178 334 3.27E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_08555 456ad74290d76baaf0eca51be387047d 344 SMART SM00091 16 79 1.1E-6 T 14-10-2018 IPR000014 PAS domain RY45_08555 456ad74290d76baaf0eca51be387047d 344 SMART SM00387 231 335 1.2E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_08555 456ad74290d76baaf0eca51be387047d 344 Pfam PF13188 PAS domain 17 70 4.6E-8 T 14-10-2018 IPR000014 PAS domain RY45_08555 456ad74290d76baaf0eca51be387047d 344 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 334 1.0E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_08555 456ad74290d76baaf0eca51be387047d 344 SMART SM00388 122 188 1.9E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_08555 456ad74290d76baaf0eca51be387047d 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 266 280 1.1E-18 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_08555 456ad74290d76baaf0eca51be387047d 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 332 1.1E-18 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_08555 456ad74290d76baaf0eca51be387047d 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 295 313 1.1E-18 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_08555 456ad74290d76baaf0eca51be387047d 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 284 294 1.1E-18 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_08555 456ad74290d76baaf0eca51be387047d 344 SUPERFAMILY SSF55785 16 100 3.32E-9 T 14-10-2018 IPR035965 PAS domain superfamily RY45_08555 456ad74290d76baaf0eca51be387047d 344 Pfam PF00512 His Kinase A (phospho-acceptor) domain 122 186 2.6E-10 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_08555 456ad74290d76baaf0eca51be387047d 344 Gene3D G3DSA:3.30.565.10 190 341 1.6E-35 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 Gene3D G3DSA:3.30.450.20 618 750 1.6E-11 T 14-10-2018 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 SUPERFAMILY SSF55874 846 1009 3.14E-38 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 Gene3D G3DSA:3.40.50.2300 1028 1162 1.3E-17 T 14-10-2018 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 Gene3D G3DSA:1.10.287.130 751 854 2.3E-14 T 14-10-2018 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 SMART SM00448 1032 1145 6.6E-12 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 SUPERFAMILY SSF47384 774 857 1.18E-14 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 SMART SM00388 790 856 1.1E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 PRINTS PR00344 Bacterial sensor protein C-terminal signature 954 964 2.8E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 PRINTS PR00344 Bacterial sensor protein C-terminal signature 936 950 2.8E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 PRINTS PR00344 Bacterial sensor protein C-terminal signature 995 1008 2.8E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 PRINTS PR00344 Bacterial sensor protein C-terminal signature 971 989 2.8E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 Pfam PF00072 Response regulator receiver domain 1034 1144 4.6E-9 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 Gene3D G3DSA:3.30.565.10 861 1013 6.1E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 Pfam PF12860 PAS fold 636 749 1.2E-46 T 14-10-2018 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 SUPERFAMILY SSF55785 626 743 5.65E-9 T 14-10-2018 IPR035965 PAS domain superfamily RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 SMART SM00387 900 1011 1.7E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 Pfam PF00512 His Kinase A (phospho-acceptor) domain 790 856 1.5E-10 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 SUPERFAMILY SSF52172 1030 1154 6.12E-19 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05385 834950faff4de9963623b2c937a9ddc4 1166 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 901 1010 1.1E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 7.9E-50 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 Pfam PF00849 RNA pseudouridylate synthase 62 192 1.2E-15 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 Pfam PF01479 S4 domain 1 43 7.3E-8 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 SMART SM00363 1 60 4.8E-7 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 SUPERFAMILY SSF55174 1 81 1.62E-14 T 14-10-2018 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 Gene3D G3DSA:3.10.290.10 1 62 1.8E-19 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 Gene3D G3DSA:3.30.70.1560 128 209 2.4E-60 T 14-10-2018 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 SUPERFAMILY SSF55120 61 227 3.52E-46 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 Gene3D G3DSA:3.30.70.580 63 227 2.4E-60 T 14-10-2018 RY45_14870 3222bc4123e2e3739be89d4e404a3234 230 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RY45_14425 fe37d6256d82491d1dd5667a2e4409eb 75 Gene3D G3DSA:2.30.30.90 4 75 6.1E-20 T 14-10-2018 IPR038157 Ferrous iron transporter, core domain RY45_14425 fe37d6256d82491d1dd5667a2e4409eb 75 SMART SM00899 1 74 2.2E-19 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RY45_14425 fe37d6256d82491d1dd5667a2e4409eb 75 Pfam PF04023 FeoA domain 1 74 5.6E-15 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RY45_14425 fe37d6256d82491d1dd5667a2e4409eb 75 SUPERFAMILY SSF50037 5 74 1.6E-17 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal RY45_03705 f24919a59d30cacf8661c2fcb99ec860 344 Gene3D G3DSA:3.40.50.300 2 224 5.7E-63 T 14-10-2018 RY45_03705 f24919a59d30cacf8661c2fcb99ec860 344 Gene3D G3DSA:2.40.50.140 282 332 1.6E-6 T 14-10-2018 RY45_03705 f24919a59d30cacf8661c2fcb99ec860 344 Pfam PF00005 ABC transporter 19 163 1.7E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_03705 f24919a59d30cacf8661c2fcb99ec860 344 Gene3D G3DSA:2.40.50.940 225 341 1.6E-6 T 14-10-2018 RY45_03705 f24919a59d30cacf8661c2fcb99ec860 344 SMART SM00382 28 221 5.3E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_03705 f24919a59d30cacf8661c2fcb99ec860 344 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_03705 f24919a59d30cacf8661c2fcb99ec860 344 SUPERFAMILY SSF52540 4 246 6.65E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03705 f24919a59d30cacf8661c2fcb99ec860 344 SUPERFAMILY SSF50331 239 341 4.53E-5 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RY45_03235 2c095451370aac3c994160b2d49fc305 659 PRINTS PR01607 Apyrase family signature 235 252 1.4E-27 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 PRINTS PR01607 Apyrase family signature 302 322 1.4E-27 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 PRINTS PR01607 Apyrase family signature 441 464 1.4E-27 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 PRINTS PR01607 Apyrase family signature 541 560 1.4E-27 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 PRINTS PR01607 Apyrase family signature 28 46 1.4E-27 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 PRINTS PR01607 Apyrase family signature 263 286 1.4E-27 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 Pfam PF00149 Calcineurin-like phosphoesterase 30 280 4.3E-10 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RY45_03235 2c095451370aac3c994160b2d49fc305 659 Pfam PF02872 5'-nucleotidase, C-terminal domain 371 564 3.0E-25 T 14-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 SUPERFAMILY SSF56300 24 369 1.01E-79 T 14-10-2018 RY45_03235 2c095451370aac3c994160b2d49fc305 659 Gene3D G3DSA:3.90.780.10 385 596 2.1E-58 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 SUPERFAMILY SSF55816 367 596 8.5E-41 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_03235 2c095451370aac3c994160b2d49fc305 659 Gene3D G3DSA:3.60.21.10 24 369 5.6E-121 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_03235 2c095451370aac3c994160b2d49fc305 659 ProSitePatterns PS00786 5'-nucleotidase signature 2. 118 129 - T 14-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_06700 e0af701a26f328dc37a7bda057671d91 168 SUPERFAMILY SSF55729 4 166 8.54E-27 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_06700 e0af701a26f328dc37a7bda057671d91 168 Pfam PF00583 Acetyltransferase (GNAT) family 54 143 8.9E-12 T 14-10-2018 IPR000182 GNAT domain RY45_06700 e0af701a26f328dc37a7bda057671d91 168 Gene3D G3DSA:3.40.630.30 5 159 1.4E-31 T 14-10-2018 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 Gene3D G3DSA:1.10.150.240 19 98 2.2E-56 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 6 219 3.9E-53 T 14-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 97 192 1.2E-12 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 197 6.4E-22 T 14-10-2018 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 SUPERFAMILY SSF56784 6 223 1.87E-44 T 14-10-2018 IPR036412 HAD-like superfamily RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 140 156 1.6E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 187 200 1.6E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 109 122 1.6E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 1.6E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 Gene3D G3DSA:3.40.50.1000 8 218 2.2E-56 T 14-10-2018 IPR023214 HAD superfamily RY45_10940 9b5b1cd526d9a85e80e9beadb224195c 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 87 198 5.5E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_17395 00abad789e99412b794ea7f935a398dd 398 Gene3D G3DSA:3.10.580.10 288 395 2.6E-8 T 14-10-2018 RY45_17395 00abad789e99412b794ea7f935a398dd 398 SMART SM00382 53 242 7.8E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17395 00abad789e99412b794ea7f935a398dd 398 Pfam PF00005 ABC transporter 45 192 1.3E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17395 00abad789e99412b794ea7f935a398dd 398 Gene3D G3DSA:3.40.50.300 33 268 7.0E-72 T 14-10-2018 RY45_17395 00abad789e99412b794ea7f935a398dd 398 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17395 00abad789e99412b794ea7f935a398dd 398 SUPERFAMILY SSF54631 276 392 6.78E-11 T 14-10-2018 RY45_17395 00abad789e99412b794ea7f935a398dd 398 SUPERFAMILY SSF52540 43 270 5.32E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17395 00abad789e99412b794ea7f935a398dd 398 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 395 9.1E-158 T 14-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 RY45_17395 00abad789e99412b794ea7f935a398dd 398 Pfam PF00571 CBS domain 349 392 0.0044 T 14-10-2018 IPR000644 CBS domain RY45_11040 ce879f97128042357586c9f2412d709d 192 SUPERFAMILY SSF82057 121 192 1.33E-22 T 14-10-2018 RY45_11040 ce879f97128042357586c9f2412d709d 192 Gene3D G3DSA:2.30.30.40 123 192 6.2E-27 T 14-10-2018 RY45_11040 ce879f97128042357586c9f2412d709d 192 Pfam PF03831 PhnA domain 127 192 4.6E-25 T 14-10-2018 IPR013988 PhnA protein, C-terminal RY45_11040 ce879f97128042357586c9f2412d709d 192 SMART SM00782 6 52 3.0E-13 T 14-10-2018 IPR013991 PhnA protein N-terminal, proteobacterial RY45_13735 7798920fab31bbf54a8ba2ea5820bb5f 1019 SUPERFAMILY SSF46548 565 690 1.92E-7 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_13735 7798920fab31bbf54a8ba2ea5820bb5f 1019 Gene3D G3DSA:3.30.465.40 19 207 1.6E-44 T 14-10-2018 RY45_13735 7798920fab31bbf54a8ba2ea5820bb5f 1019 SUPERFAMILY SSF55103 259 539 7.36E-50 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RY45_13735 7798920fab31bbf54a8ba2ea5820bb5f 1019 Pfam PF13183 4Fe-4S dicluster domain 575 686 2.2E-11 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13735 7798920fab31bbf54a8ba2ea5820bb5f 1019 Pfam PF01565 FAD binding domain 52 190 1.1E-34 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RY45_13735 7798920fab31bbf54a8ba2ea5820bb5f 1019 SUPERFAMILY SSF56176 31 282 1.06E-50 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_13735 7798920fab31bbf54a8ba2ea5820bb5f 1019 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 538 9.6E-56 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RY45_13735 7798920fab31bbf54a8ba2ea5820bb5f 1019 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 672 683 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_08840 2f867b8112ca8d372041c147dc80c6c9 574 Pfam PF13444 Acetyltransferase (GNAT) domain 324 424 1.8E-22 T 14-10-2018 RY45_08840 2f867b8112ca8d372041c147dc80c6c9 574 SUPERFAMILY SSF55729 309 519 3.18E-24 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_08840 2f867b8112ca8d372041c147dc80c6c9 574 SUPERFAMILY SSF69593 66 247 1.57E-14 T 14-10-2018 RY45_08840 2f867b8112ca8d372041c147dc80c6c9 574 SMART SM00563 81 198 2.4E-11 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_08840 2f867b8112ca8d372041c147dc80c6c9 574 Pfam PF01553 Acyltransferase 71 194 5.0E-8 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 104 115 - T 14-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 Gene3D G3DSA:3.30.230.10 14 181 3.0E-84 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 Pfam PF00288 GHMP kinases N terminal domain 98 164 1.3E-12 T 14-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 TIGRFAM TIGR00191 thrB: homoserine kinase 13 322 1.5E-92 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 Hamap MF_00384 Homoserine kinase [thrB]. 13 322 27.805 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 PRINTS PR00958 Homoserine kinase signature 151 164 4.9E-30 T 14-10-2018 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 PRINTS PR00958 Homoserine kinase signature 189 206 4.9E-30 T 14-10-2018 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 PRINTS PR00958 Homoserine kinase signature 268 283 4.9E-30 T 14-10-2018 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 PRINTS PR00958 Homoserine kinase signature 111 126 4.9E-30 T 14-10-2018 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 PRINTS PR00958 Homoserine kinase signature 18 33 4.9E-30 T 14-10-2018 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 PIRSF PIRSF000676 7 324 1.1E-76 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 SUPERFAMILY SSF55060 186 302 1.22E-27 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 SUPERFAMILY SSF54211 12 199 6.75E-29 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 Pfam PF08544 GHMP kinases C terminal 241 302 2.3E-8 T 14-10-2018 IPR013750 GHMP kinase, C-terminal domain RY45_15575 b9b80096a5e393c87cf0ff166d847c07 326 Gene3D G3DSA:3.30.70.890 182 291 3.0E-84 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 Pfam PF00072 Response regulator receiver domain 8 119 1.5E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 1.9E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 Gene3D G3DSA:3.40.50.12740 7 211 1.8E-62 T 14-10-2018 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 SUPERFAMILY SSF52172 4 135 3.27E-34 T 14-10-2018 IPR011006 CheY-like superfamily RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 SMART SM00421 150 207 1.4E-23 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 3.3E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 3.3E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 3.3E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 SMART SM00448 6 119 1.9E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_14720 0e946e9b6585928be03ec54108df3bf9 212 SUPERFAMILY SSF46894 141 209 8.16E-21 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_06045 66989b9a74619762dfe4a37384ae3ded 259 TIGRFAM TIGR01252 acetolac_decarb: alpha-acetolactate decarboxylase 28 258 2.6E-83 T 14-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 RY45_06045 66989b9a74619762dfe4a37384ae3ded 259 Gene3D G3DSA:3.30.1330.80 29 245 7.3E-77 T 14-10-2018 RY45_06045 66989b9a74619762dfe4a37384ae3ded 259 PIRSF PIRSF001332 10 259 2.6E-88 T 14-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 RY45_06045 66989b9a74619762dfe4a37384ae3ded 259 SUPERFAMILY SSF117856 28 258 3.03E-81 T 14-10-2018 RY45_06045 66989b9a74619762dfe4a37384ae3ded 259 Pfam PF03306 Alpha-acetolactate decarboxylase 29 246 1.5E-80 T 14-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 RY45_06045 66989b9a74619762dfe4a37384ae3ded 259 Gene3D G3DSA:3.30.1330.80 104 226 7.3E-77 T 14-10-2018 RY45_17895 26769f562763338fbdef2b0cd9991245 306 Hamap MF_00313 Glutaminase [glsA]. 4 306 46.739 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RY45_17895 26769f562763338fbdef2b0cd9991245 306 TIGRFAM TIGR03814 Gln_ase: glutaminase A 8 306 2.8E-127 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RY45_17895 26769f562763338fbdef2b0cd9991245 306 Gene3D G3DSA:3.40.710.10 3 306 1.7E-106 T 14-10-2018 RY45_17895 26769f562763338fbdef2b0cd9991245 306 SUPERFAMILY SSF56601 7 306 3.09E-110 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_17895 26769f562763338fbdef2b0cd9991245 306 Pfam PF04960 Glutaminase 22 306 4.3E-110 T 14-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RY45_15515 64b54298f8511175ba077af72b24264d 255 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 34 254 1.6E-29 T 14-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RY45_15515 64b54298f8511175ba077af72b24264d 255 SUPERFAMILY SSF53213 4 255 1.11E-70 T 14-10-2018 RY45_15515 64b54298f8511175ba077af72b24264d 255 Gene3D G3DSA:3.40.830.10 1 255 4.4E-75 T 14-10-2018 RY45_15515 64b54298f8511175ba077af72b24264d 255 PIRSF PIRSF006157 1 255 2.5E-67 T 14-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 RY45_02785 76092baf10ea6998a4bfad2654b2b3fd 654 Gene3D G3DSA:3.30.1120.80 268 643 4.0E-147 T 14-10-2018 RY45_02785 76092baf10ea6998a4bfad2654b2b3fd 654 SUPERFAMILY SSF53649 283 609 2.22E-68 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_02785 76092baf10ea6998a4bfad2654b2b3fd 654 Pfam PF00884 Sulfatase 285 555 7.0E-43 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RY45_02785 76092baf10ea6998a4bfad2654b2b3fd 654 PIRSF PIRSF005091 14 640 2.4E-95 T 14-10-2018 IPR012160 Lipoteichoic acid synthase-like RY45_02785 76092baf10ea6998a4bfad2654b2b3fd 654 Gene3D G3DSA:3.40.720.10 276 562 4.0E-147 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Gene3D G3DSA:3.30.2090.10 182 274 1.3E-270 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1039 0.0 T 14-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 SUPERFAMILY SSF82693 137 328 5.75E-23 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 3.5E-29 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 3.5E-29 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 3.5E-29 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 3.5E-29 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 3.5E-29 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 3.5E-29 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 3.5E-29 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 SUPERFAMILY SSF82714 185 269 2.35E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Gene3D G3DSA:3.30.70.1440 665 862 1.3E-270 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Gene3D G3DSA:1.20.1640.10 15 508 1.3E-270 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Gene3D G3DSA:3.30.70.1430 42 812 1.3E-270 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 SUPERFAMILY SSF82714 716 800 1.96E-18 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Pfam PF00873 AcrB/AcrD/AcrF family 6 1027 3.8E-241 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Gene3D G3DSA:1.20.1640.10 509 1025 1.3E-270 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 SUPERFAMILY SSF82866 801 1031 3.27E-48 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 SUPERFAMILY SSF82866 294 498 7.85E-41 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 SUPERFAMILY SSF82693 46 128 5.76E-20 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Gene3D G3DSA:3.30.2090.10 716 804 1.3E-270 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Gene3D G3DSA:3.30.70.1320 135 328 1.3E-270 T 14-10-2018 RY45_15300 9576719aea276024aa42bbf76210b8ac 1042 Gene3D G3DSA:3.30.70.1430 562 664 1.3E-270 T 14-10-2018 RY45_09410 082bfb11ae933ad79151ab5ea0162a0d 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 3.5E-5 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_09410 082bfb11ae933ad79151ab5ea0162a0d 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 3.5E-5 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_09410 082bfb11ae933ad79151ab5ea0162a0d 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 3.5E-5 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_09410 082bfb11ae933ad79151ab5ea0162a0d 122 Pfam PF12840 Helix-turn-helix domain 8 69 1.3E-11 T 14-10-2018 RY45_09410 082bfb11ae933ad79151ab5ea0162a0d 122 Gene3D G3DSA:1.10.10.10 2 93 6.7E-13 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09410 082bfb11ae933ad79151ab5ea0162a0d 122 SUPERFAMILY SSF46785 4 93 5.77E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09410 082bfb11ae933ad79151ab5ea0162a0d 122 SMART SM00418 8 88 1.3E-7 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Gene3D G3DSA:3.90.1440.10 229 368 6.8E-176 T 14-10-2018 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 SUPERFAMILY SSF52540 417 618 6.65E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 SMART SM00957 6 402 0.0 T 14-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Gene3D G3DSA:3.40.50.300 22 415 6.8E-176 T 14-10-2018 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Pfam PF01043 SecA preprotein cross-linking domain 232 358 8.1E-37 T 14-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 SUPERFAMILY SSF81767 227 368 9.42E-43 T 14-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 PRINTS PR00906 SecA protein signature 339 361 1.3E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 PRINTS PR00906 SecA protein signature 101 115 1.3E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 PRINTS PR00906 SecA protein signature 63 87 1.3E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 PRINTS PR00906 SecA protein signature 413 426 1.3E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 PRINTS PR00906 SecA protein signature 376 393 1.3E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 PRINTS PR00906 SecA protein signature 170 190 1.3E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 PRINTS PR00906 SecA protein signature 117 127 1.3E-73 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Pfam PF07516 SecA Wing and Scaffold domain 617 830 2.1E-70 T 14-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Gene3D G3DSA:1.10.3060.10 621 833 4.0E-79 T 14-10-2018 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 SUPERFAMILY SSF52540 6 415 4.26E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 SUPERFAMILY SSF81886 620 894 9.02E-84 T 14-10-2018 IPR036266 SecA, Wing/Scaffold superfamily RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 20.024 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 ProSitePatterns PS01312 SecA family signature. 500 515 - T 14-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Gene3D G3DSA:3.40.50.300 417 620 5.1E-89 T 14-10-2018 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Pfam PF07517 SecA DEAD-like domain 7 402 2.2E-133 T 14-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 SMART SM00958 228 358 5.5E-81 T 14-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RY45_20075 3c94846e4be17c9ff99acab11144f04c 906 Pfam PF02810 SEC-C motif 886 904 1.1E-10 T 14-10-2018 IPR004027 SEC-C motif RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 TIGRFAM TIGR01933 hflK: HflK protein 74 335 1.3E-111 T 14-10-2018 IPR010201 HflK GO:0016021 RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 Pfam PF12221 Bacterial membrane protein N terminal 1 46 1.3E-16 T 14-10-2018 IPR020980 Menbrane protein HflK, N-terminal RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 SUPERFAMILY SSF117892 105 237 7.06E-22 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 PRINTS PR00721 Stomatin signature 79 101 8.7E-6 T 14-10-2018 IPR001972 Stomatin family GO:0016020 RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 PRINTS PR00721 Stomatin signature 126 147 8.7E-6 T 14-10-2018 IPR001972 Stomatin family GO:0016020 RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 PRINTS PR00721 Stomatin signature 182 205 8.7E-6 T 14-10-2018 IPR001972 Stomatin family GO:0016020 RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 Pfam PF01145 SPFH domain / Band 7 family 76 247 5.0E-24 T 14-10-2018 IPR001107 Band 7 domain RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 SMART SM00244 72 232 1.8E-42 T 14-10-2018 IPR001107 Band 7 domain RY45_05125 ea0731bfa420b75d2cecfdeed7ab9453 383 Gene3D G3DSA:3.30.479.30 101 234 2.1E-18 T 14-10-2018 RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 138 1.2E-11 T 14-10-2018 IPR000014 PAS domain RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 155 261 3.6E-14 T 14-10-2018 IPR000014 PAS domain RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 Gene3D G3DSA:3.30.750.24 289 402 1.1E-32 T 14-10-2018 IPR036513 STAS domain superfamily RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 Pfam PF08447 PAS fold 163 248 3.1E-14 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 SUPERFAMILY SSF55785 152 252 1.13E-24 T 14-10-2018 IPR035965 PAS domain superfamily RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 Pfam PF13426 PAS domain 35 132 1.9E-11 T 14-10-2018 IPR000014 PAS domain RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 Gene3D G3DSA:3.30.450.20 16 150 7.3E-20 T 14-10-2018 RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 SUPERFAMILY SSF52091 286 398 1.84E-16 T 14-10-2018 IPR036513 STAS domain superfamily RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 Gene3D G3DSA:3.30.450.20 154 288 1.7E-25 T 14-10-2018 RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 Pfam PF01740 STAS domain 295 394 2.4E-7 T 14-10-2018 IPR002645 STAS domain RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 SMART SM00091 138 208 0.92 T 14-10-2018 IPR000014 PAS domain RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 SMART SM00091 16 85 3.4E-4 T 14-10-2018 IPR000014 PAS domain RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 SMART SM00086 91 133 6.5 T 14-10-2018 IPR001610 PAC motif RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 SMART SM00086 213 255 0.0085 T 14-10-2018 IPR001610 PAC motif RY45_02410 57a9f04dd2434bca596ff9025111ecde 406 SUPERFAMILY SSF55785 32 135 1.74E-20 T 14-10-2018 IPR035965 PAS domain superfamily RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 PRINTS PR00811 Bacterial general secretion pathway protein D signature 350 374 4.8E-16 T 14-10-2018 IPR001775 GspD/PilQ family RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 PRINTS PR00811 Bacterial general secretion pathway protein D signature 521 535 4.8E-16 T 14-10-2018 IPR001775 GspD/PilQ family RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 PRINTS PR00811 Bacterial general secretion pathway protein D signature 278 288 4.8E-16 T 14-10-2018 IPR001775 GspD/PilQ family RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 PRINTS PR00811 Bacterial general secretion pathway protein D signature 498 516 4.8E-16 T 14-10-2018 IPR001775 GspD/PilQ family RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 SMART SM00965 96 144 3.6E-5 T 14-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 Pfam PF07655 Secretin N-terminal domain 148 249 6.2E-27 T 14-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 TIGRFAM TIGR02519 pilus_MshL: pilus (MSHA type) biogenesis protein MshL 244 533 1.3E-86 T 14-10-2018 IPR013358 Pilus biogenesis, MshL RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 Pfam PF00263 Bacterial type II and III secretion system protein 355 534 1.8E-38 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 Gene3D G3DSA:3.55.50.30 54 151 2.6E-8 T 14-10-2018 RY45_02230 f6716dfd6eecea8f1aa216b44c236e44 557 ProDom PD128112 MEMBRANE OUTER PILUS LIPOPROTEIN BIOSYNTHESIS C TOXIN-COREGULATED TOXIN COFD TCPC 214 469 0.008 T 14-10-2018 RY45_13475 3e12bb9c8dd3adba071027e2f2c5ce4c 198 Gene3D G3DSA:3.40.50.10610 41 190 2.4E-32 T 14-10-2018 RY45_13475 3e12bb9c8dd3adba071027e2f2c5ce4c 198 Pfam PF13036 Peptidoglycan-synthase activator LpoB 43 187 5.5E-51 T 14-10-2018 IPR014094 Penicillin-binding protein activator LpoB RY45_13475 3e12bb9c8dd3adba071027e2f2c5ce4c 198 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 7 189 2.0E-63 T 14-10-2018 IPR014094 Penicillin-binding protein activator LpoB RY45_09195 32a9cd3e1f148d3a6eb2c1c70eecc878 206 PIRSF PIRSF011489 1 196 2.2E-58 T 14-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 RY45_09195 32a9cd3e1f148d3a6eb2c1c70eecc878 206 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 185 3.6E-26 T 14-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 375 641 7.8E-40 T 14-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 173 189 3.2E-29 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 204 220 3.2E-29 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 94 110 3.2E-29 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 127 146 3.2E-29 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 274 292 3.2E-29 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 123 341 9.2E-49 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 SUPERFAMILY SSF51445 34 374 2.21E-83 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 Pfam PF14310 Fibronectin type III-like domain 680 751 8.4E-20 T 14-10-2018 IPR026891 Fibronectin type III-like domain RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 Gene3D G3DSA:3.20.20.300 42 351 6.8E-102 T 14-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 274 291 - T 14-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 SUPERFAMILY SSF52279 375 644 1.96E-38 T 14-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 Gene3D G3DSA:2.60.40.10 644 768 8.1E-27 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 Gene3D G3DSA:3.40.50.1700 359 643 1.3E-88 T 14-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RY45_14135 2c0d95d178644a73f1ebaf042ae0b57b 793 SMART SM01217 680 751 3.9E-23 T 14-10-2018 IPR026891 Fibronectin type III-like domain RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 2.2E-17 T 14-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Gene3D G3DSA:3.30.950.10 332 466 1.0E-47 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Pfam PF13241 Putative NAD(P)-binding 6 115 2.2E-27 T 14-10-2018 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 2.7E-90 T 14-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 4.2E-9 T 14-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 SUPERFAMILY SSF75615 114 206 1.44E-27 T 14-10-2018 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 SUPERFAMILY SSF51735 1 112 5.15E-27 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Gene3D G3DSA:3.40.50.720 1 112 2.0E-35 T 14-10-2018 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 3.0E-48 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Gene3D G3DSA:3.40.1010.10 215 331 4.2E-42 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 203 3.2E-72 T 14-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 PIRSF PIRSF036426 1 465 4.3E-201 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Gene3D G3DSA:3.30.160.110 113 148 2.7E-20 T 14-10-2018 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 SUPERFAMILY SSF53790 214 455 5.63E-79 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Hamap MF_01646 Siroheme synthase [cysG]. 1 458 52.579 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_21485 6202d0898f0368fdcfddf9d9b7b67ede 468 Gene3D G3DSA:1.10.8.210 149 212 1.1E-20 T 14-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_05315 56f0db404101b2e00094656c9010ed4e 337 Gene3D G3DSA:3.40.50.720 1 334 2.2E-94 T 14-10-2018 RY45_05315 56f0db404101b2e00094656c9010ed4e 337 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 3.1E-23 T 14-10-2018 RY45_05315 56f0db404101b2e00094656c9010ed4e 337 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 3.1E-23 T 14-10-2018 RY45_05315 56f0db404101b2e00094656c9010ed4e 337 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 3.1E-23 T 14-10-2018 RY45_05315 56f0db404101b2e00094656c9010ed4e 337 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 3.1E-23 T 14-10-2018 RY45_05315 56f0db404101b2e00094656c9010ed4e 337 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 237 4.0E-56 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RY45_05315 56f0db404101b2e00094656c9010ed4e 337 SUPERFAMILY SSF51735 1 333 5.14E-90 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 SUPERFAMILY SSF51905 2 337 1.3E-32 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 1.7E-7 T 14-10-2018 RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.7E-7 T 14-10-2018 RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 1.7E-7 T 14-10-2018 RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 334 2.1E-66 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 5.6E-13 T 14-10-2018 RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 5.6E-13 T 14-10-2018 RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 5.6E-13 T 14-10-2018 RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 5.6E-13 T 14-10-2018 RY45_13415 73534cbd4ec8d1c03270e38ec46577de 430 Gene3D G3DSA:3.50.50.100 1 406 4.6E-117 T 14-10-2018 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 155 277 1.6E-42 T 14-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 SUPERFAMILY SSF53927 4 145 2.34E-37 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 SUPERFAMILY SSF53927 152 291 1.26E-36 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 Gene3D G3DSA:3.40.140.10 28 177 3.0E-37 T 14-10-2018 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 Hamap MF_01558 Cytidine deaminase [cdd]. 1 292 44.519 T 14-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 28 290 4.3E-84 T 14-10-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 PIRSF PIRSF006334 14 293 1.7E-97 T 14-10-2018 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 101 135 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 60 143 1.2E-10 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RY45_10170 d7a3bd4006dc3da2e3166f8525cee2bb 293 Gene3D G3DSA:3.40.140.10 180 290 2.6E-26 T 14-10-2018 RY45_12315 c82a7b6a2181261a5b8057f8479ef356 331 PIRSF PIRSF026649 10 314 7.2E-115 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RY45_12315 c82a7b6a2181261a5b8057f8479ef356 331 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 304 1.1E-69 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RY45_12315 c82a7b6a2181261a5b8057f8479ef356 331 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 310 47.446 T 14-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 RY45_13910 d9e74b81ba01cd1c0f3ee0faa262e482 271 Gene3D G3DSA:1.20.1270.190 108 267 7.7E-60 T 14-10-2018 RY45_13910 d9e74b81ba01cd1c0f3ee0faa262e482 271 Gene3D G3DSA:1.10.287.1060 137 205 7.7E-60 T 14-10-2018 RY45_13910 d9e74b81ba01cd1c0f3ee0faa262e482 271 Gene3D G3DSA:1.10.8.520 36 107 8.3E-32 T 14-10-2018 RY45_13910 d9e74b81ba01cd1c0f3ee0faa262e482 271 Pfam PF16806 Antiactivator protein ExsD 41 266 9.3E-50 T 14-10-2018 IPR031835 Antiactivator protein ExsD RY45_03825 ccee03594b6e28bd75ae929bc4f272b5 274 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 11 263 20.387 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RY45_03825 ccee03594b6e28bd75ae929bc4f272b5 274 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 143 155 - T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RY45_03825 ccee03594b6e28bd75ae929bc4f272b5 274 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 9 264 6.4E-90 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RY45_03825 ccee03594b6e28bd75ae929bc4f272b5 274 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 14 258 9.5E-84 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 PRINTS PR00315 GTP-binding elongation factor signature 136 145 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 PRINTS PR00315 GTP-binding elongation factor signature 100 111 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 PRINTS PR00315 GTP-binding elongation factor signature 84 94 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 PRINTS PR00315 GTP-binding elongation factor signature 64 72 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 PRINTS PR00315 GTP-binding elongation factor signature 14 27 6.6E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 Gene3D G3DSA:3.40.50.300 71 378 1.1E-117 T 14-10-2018 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 171 5.1E-19 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 3 526 52.216 T 14-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 528 0.0 T 14-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 Pfam PF16658 Class II release factor RF3, C-terminal domain 386 513 1.3E-45 T 14-10-2018 IPR032090 Peptide chain release factor 3, C-terminal RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 Pfam PF03144 Elongation factor Tu domain 2 313 379 2.8E-10 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 SUPERFAMILY SSF50447 261 392 1.7E-29 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 Gene3D G3DSA:3.40.50.300 109 274 1.1E-117 T 14-10-2018 RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 SUPERFAMILY SSF52540 9 277 8.08E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 Gene3D G3DSA:3.30.70.3280 389 528 5.3E-51 T 14-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 SUPERFAMILY SSF54980 392 467 6.83E-17 T 14-10-2018 IPR035647 EF-G domain III/V-like RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 57 72 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site RY45_04105 9b8090af22867e38bf4bf2514ef80003 528 Pfam PF00009 Elongation factor Tu GTP binding domain 12 276 1.1E-45 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 SUPERFAMILY SSF51735 463 636 1.51E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 PIRSF PIRSF000727 1 817 0.0 T 14-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Gene3D G3DSA:3.30.360.10 625 795 6.1E-116 T 14-10-2018 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Gene3D G3DSA:3.40.1160.10 3 295 2.0E-82 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Gene3D G3DSA:3.40.50.720 466 811 6.1E-116 T 14-10-2018 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Gene3D G3DSA:3.30.2130.10 302 463 8.0E-47 T 14-10-2018 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Pfam PF13840 ACT domain 394 456 2.1E-7 T 14-10-2018 IPR027795 CASTOR, ACT domain RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 SUPERFAMILY SSF53633 1 295 3.57E-71 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 606 6.1E-26 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Pfam PF01842 ACT domain 324 381 4.3E-9 T 14-10-2018 IPR002912 ACT domain RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 SUPERFAMILY SSF55021 303 381 6.22E-20 T 14-10-2018 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Pfam PF00742 Homoserine dehydrogenase 614 810 6.6E-46 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Gene3D G3DSA:1.20.120.1320 41 142 2.0E-82 T 14-10-2018 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 3.1E-130 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 SUPERFAMILY SSF55021 383 476 3.93E-22 T 14-10-2018 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 Pfam PF00696 Amino acid kinase family 2 284 6.4E-41 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 SUPERFAMILY SSF55347 614 797 4.05E-48 T 14-10-2018 RY45_15580 b04c295e2c84c6eddd92c178203fdeaf 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RY45_02185 6e1d122fe05b8ae8674621e4f9d507b2 510 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 154 - T 14-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 RY45_02185 6e1d122fe05b8ae8674621e4f9d507b2 510 Gene3D G3DSA:1.10.275.10 2 197 1.6E-68 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal RY45_02185 6e1d122fe05b8ae8674621e4f9d507b2 510 Pfam PF00221 Aromatic amino acid lyase 11 462 2.7E-184 T 14-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 RY45_02185 6e1d122fe05b8ae8674621e4f9d507b2 510 SUPERFAMILY SSF48557 4 497 1.33E-189 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 RY45_02185 6e1d122fe05b8ae8674621e4f9d507b2 510 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 508 8.0E-211 T 14-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02185 6e1d122fe05b8ae8674621e4f9d507b2 510 Gene3D G3DSA:1.20.200.10 198 509 6.9E-120 T 14-10-2018 RY45_02185 6e1d122fe05b8ae8674621e4f9d507b2 510 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 43.573 T 14-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_11805 8c63c5ce66529d015486f349b8cc23e1 314 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 309 53.229 T 14-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 RY45_11805 8c63c5ce66529d015486f349b8cc23e1 314 Pfam PF01207 Dihydrouridine synthase (Dus) 4 278 7.2E-79 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_11805 8c63c5ce66529d015486f349b8cc23e1 314 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 14-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_11805 8c63c5ce66529d015486f349b8cc23e1 314 PIRSF PIRSF006621 1 314 1.7E-79 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_11805 8c63c5ce66529d015486f349b8cc23e1 314 SUPERFAMILY SSF51395 1 306 4.58E-70 T 14-10-2018 RY45_11805 8c63c5ce66529d015486f349b8cc23e1 314 Gene3D G3DSA:1.20.225.30 242 311 3.9E-20 T 14-10-2018 RY45_11805 8c63c5ce66529d015486f349b8cc23e1 314 Gene3D G3DSA:3.20.20.70 1 240 2.8E-78 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_02625 66898942c16e88502aa542f79a12dedf 680 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 54 680 4.1E-106 T 14-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RY45_02625 66898942c16e88502aa542f79a12dedf 680 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 146 6.2E-20 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_02625 66898942c16e88502aa542f79a12dedf 680 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 663 680 - T 14-10-2018 IPR010917 TonB-dependent receptor, conserved site RY45_02625 66898942c16e88502aa542f79a12dedf 680 Gene3D G3DSA:2.40.170.20 156 680 4.9E-113 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_02625 66898942c16e88502aa542f79a12dedf 680 Gene3D G3DSA:2.170.130.10 34 155 7.5E-33 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_02625 66898942c16e88502aa542f79a12dedf 680 SUPERFAMILY SSF56935 24 680 8.24E-129 T 14-10-2018 RY45_02625 66898942c16e88502aa542f79a12dedf 680 Pfam PF00593 TonB dependent receptor 229 679 8.3E-56 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_20645 2512741d20d584eb3171e01b975a6512 263 Pfam PF13673 Acetyltransferase (GNAT) domain 156 250 9.2E-7 T 14-10-2018 IPR000182 GNAT domain RY45_20645 2512741d20d584eb3171e01b975a6512 263 SUPERFAMILY SSF55729 121 253 5.75E-17 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_20645 2512741d20d584eb3171e01b975a6512 263 Gene3D G3DSA:3.40.630.30 13 252 1.4E-24 T 14-10-2018 RY45_14050 42c1af2937ceda47753adbebf84ff291 717 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 15 700 1.1E-189 T 14-10-2018 IPR010019 Integral membrane protein, YccS RY45_14050 42c1af2937ceda47753adbebf84ff291 717 Pfam PF12805 FUSC-like inner membrane protein yccS 69 349 3.0E-95 T 14-10-2018 IPR032692 Integral membrane protein YccS, N-terminal RY45_14050 42c1af2937ceda47753adbebf84ff291 717 Pfam PF13515 Fusaric acid resistance protein-like 406 525 1.9E-22 T 14-10-2018 RY45_14050 42c1af2937ceda47753adbebf84ff291 717 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 15 700 4.3E-188 T 14-10-2018 IPR010020 Integral membrane protein, YccS/YhfK RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 SUPERFAMILY SSF51621 2 342 2.41E-85 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 Pfam PF00224 Pyruvate kinase, barrel domain 3 341 1.3E-123 T 14-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 Gene3D G3DSA:3.40.1380.20 339 474 9.9E-151 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 Gene3D G3DSA:3.20.20.60 3 338 9.9E-151 T 14-10-2018 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 478 1.2E-165 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 SUPERFAMILY SSF50800 71 166 6.45E-23 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 14-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 Pfam PF02887 Pyruvate kinase, alpha/beta domain 360 476 9.5E-31 T 14-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 SUPERFAMILY SSF52935 326 478 9.03E-38 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 Gene3D G3DSA:2.40.33.10 71 169 9.9E-151 T 14-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 PRINTS PR01050 Pyruvate kinase family signature 316 332 8.4E-49 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 PRINTS PR01050 Pyruvate kinase family signature 60 76 8.4E-49 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 PRINTS PR01050 Pyruvate kinase family signature 272 296 8.4E-49 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 PRINTS PR01050 Pyruvate kinase family signature 220 246 8.4E-49 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 PRINTS PR01050 Pyruvate kinase family signature 187 201 8.4E-49 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 PRINTS PR01050 Pyruvate kinase family signature 297 315 8.4E-49 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_07150 5ad32c242d5ab32059473c4cda69f967 479 PRINTS PR01050 Pyruvate kinase family signature 247 271 8.4E-49 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_10600 0e17514b97481d743c332603a9402984 527 SMART SM00387 417 527 6.2E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_10600 0e17514b97481d743c332603a9402984 527 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 421 526 3.1E-12 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_10600 0e17514b97481d743c332603a9402984 527 Gene3D G3DSA:3.30.450.20 195 310 1.1E-19 T 14-10-2018 RY45_10600 0e17514b97481d743c332603a9402984 527 SUPERFAMILY SSF55890 322 406 4.18E-7 T 14-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 RY45_10600 0e17514b97481d743c332603a9402984 527 SUPERFAMILY SSF103190 34 165 1.29E-35 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_10600 0e17514b97481d743c332603a9402984 527 SUPERFAMILY SSF55785 206 309 5.82E-7 T 14-10-2018 IPR035965 PAS domain superfamily RY45_10600 0e17514b97481d743c332603a9402984 527 Gene3D G3DSA:3.30.450.20 30 160 1.1E-41 T 14-10-2018 RY45_10600 0e17514b97481d743c332603a9402984 527 Pfam PF17203 Single cache domain 3 38 167 8.9E-25 T 14-10-2018 IPR033463 Single cache domain 3 RY45_10600 0e17514b97481d743c332603a9402984 527 SUPERFAMILY SSF55874 390 525 3.67E-22 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_10600 0e17514b97481d743c332603a9402984 527 Gene3D G3DSA:3.30.565.10 374 523 1.2E-22 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_06460 01d90bb985e0820af833669ff6b958aa 676 Gene3D G3DSA:1.10.1380.10 70 459 5.3E-243 T 14-10-2018 RY45_06460 01d90bb985e0820af833669ff6b958aa 676 Pfam PF01431 Peptidase family M13 472 673 1.0E-72 T 14-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RY45_06460 01d90bb985e0820af833669ff6b958aa 676 Pfam PF05649 Peptidase family M13 44 420 5.2E-104 T 14-10-2018 IPR008753 Peptidase M13, N-terminal domain GO:0006508 RY45_06460 01d90bb985e0820af833669ff6b958aa 676 Gene3D G3DSA:3.40.390.10 39 676 5.3E-243 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RY45_06460 01d90bb985e0820af833669ff6b958aa 676 SUPERFAMILY SSF55486 31 676 6.7E-216 T 14-10-2018 RY45_06460 01d90bb985e0820af833669ff6b958aa 676 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 482 494 2.5E-21 T 14-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RY45_06460 01d90bb985e0820af833669ff6b958aa 676 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 574 585 2.5E-21 T 14-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RY45_06460 01d90bb985e0820af833669ff6b958aa 676 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 464 476 2.5E-21 T 14-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RY45_06460 01d90bb985e0820af833669ff6b958aa 676 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 503 519 2.5E-21 T 14-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 SUPERFAMILY SSF81296 322 425 2.4E-20 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 323 407 7.7E-12 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 Gene3D G3DSA:2.60.40.1130 188 301 8.0E-36 T 14-10-2018 RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 Gene3D G3DSA:2.60.40.1110 55 187 5.3E-28 T 14-10-2018 RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 Gene3D G3DSA:2.60.40.10 314 421 1.4E-28 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 TIGRFAM TIGR02103 pullul_strch: alpha-1,6-glucosidases, pullulanase-type 200 1097 0.0 T 14-10-2018 IPR011839 Alpha-1,6-glucosidases, pullulanase-type GO:0005975|GO:0051060 RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 Gene3D G3DSA:2.60.40.1180 1021 1114 2.8E-27 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 SUPERFAMILY SSF51011 988 1109 1.01E-28 T 14-10-2018 RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 SUPERFAMILY SSF49452 58 187 2.94E-24 T 14-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 Pfam PF03714 Bacterial pullanase-associated domain 96 187 1.4E-5 T 14-10-2018 IPR005323 Pullulanase, carbohydrate-binding module 41 GO:0005975|GO:0030246 RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 Pfam PF11852 Domain of unknown function (DUF3372) 928 1096 5.4E-47 T 14-10-2018 IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 SUPERFAMILY SSF81296 192 313 1.33E-30 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_03585 6e6110fffaac6dce6d1388964358a857 1362 SUPERFAMILY SSF51445 419 987 9.64E-141 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_10770 3e5dcb8c04071d659e86f5b6404afa22 134 Pfam PF01575 MaoC like domain 20 106 1.1E-22 T 14-10-2018 IPR002539 MaoC-like dehydratase domain RY45_10770 3e5dcb8c04071d659e86f5b6404afa22 134 PRINTS PR01483 Fatty acid synthase signature 42 63 3.2E-5 T 14-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RY45_10770 3e5dcb8c04071d659e86f5b6404afa22 134 PRINTS PR01483 Fatty acid synthase signature 20 42 3.2E-5 T 14-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RY45_10770 3e5dcb8c04071d659e86f5b6404afa22 134 SUPERFAMILY SSF54637 6 131 5.92E-35 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_10770 3e5dcb8c04071d659e86f5b6404afa22 134 Gene3D G3DSA:3.10.129.10 2 133 6.2E-41 T 14-10-2018 RY45_00730 7d75321575c7b854ce564cfae9a3b899 680 Gene3D G3DSA:1.10.1370.10 140 610 3.5E-267 T 14-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RY45_00730 7d75321575c7b854ce564cfae9a3b899 680 Pfam PF01432 Peptidase family M3 222 677 2.8E-161 T 14-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 RY45_00730 7d75321575c7b854ce564cfae9a3b899 680 Gene3D G3DSA:1.10.1370.40 13 675 3.5E-267 T 14-10-2018 RY45_00730 7d75321575c7b854ce564cfae9a3b899 680 SUPERFAMILY SSF55486 1 677 4.03E-211 T 14-10-2018 RY45_15030 2329a96cf98dcff9ef94ca63de66fff9 342 SUPERFAMILY SSF51735 1 338 4.51E-86 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_15030 2329a96cf98dcff9ef94ca63de66fff9 342 Gene3D G3DSA:3.90.25.10 193 334 8.1E-114 T 14-10-2018 RY45_15030 2329a96cf98dcff9ef94ca63de66fff9 342 Gene3D G3DSA:3.40.50.720 19 322 8.1E-114 T 14-10-2018 RY45_15030 2329a96cf98dcff9ef94ca63de66fff9 342 Pfam PF01370 NAD dependent epimerase/dehydratase family 18 263 2.6E-56 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RY45_15030 2329a96cf98dcff9ef94ca63de66fff9 342 PRINTS PR01713 Nucleotide sugar epimerase signature 44 60 1.8E-7 T 14-10-2018 RY45_15030 2329a96cf98dcff9ef94ca63de66fff9 342 PRINTS PR01713 Nucleotide sugar epimerase signature 301 318 1.8E-7 T 14-10-2018 RY45_15030 2329a96cf98dcff9ef94ca63de66fff9 342 PRINTS PR01713 Nucleotide sugar epimerase signature 257 272 1.8E-7 T 14-10-2018 RY45_15030 2329a96cf98dcff9ef94ca63de66fff9 342 PRINTS PR01713 Nucleotide sugar epimerase signature 233 248 1.8E-7 T 14-10-2018 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 14-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 175 2.0E-50 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 Gene3D G3DSA:1.10.520.20 2 106 1.3E-35 T 14-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 SUPERFAMILY SSF47928 3 105 5.62E-26 T 14-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.141 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.3E-25 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.3E-25 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.3E-25 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.3E-25 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.3E-25 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22140 3889f48899f117f0cdc5ecc322d23553 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 1.7E-56 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 Gene3D G3DSA:3.50.50.60 115 455 8.8E-178 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 445 3.8E-11 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 SUPERFAMILY SSF52821 449 560 2.62E-23 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 SUPERFAMILY SSF51905 2 198 2.02E-40 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 252 266 4.0E-13 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 4.0E-13 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 4.0E-13 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 293 300 4.0E-13 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 Pfam PF00581 Rhodanese-like domain 477 558 4.1E-10 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 Gene3D G3DSA:3.40.250.10 468 559 5.5E-22 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.0E-20 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 267 1.0E-20 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.0E-20 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 1.0E-20 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 278 300 1.0E-20 T 14-10-2018 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 SMART SM00450 467 562 8.3E-16 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 321 4.0E-53 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 SUPERFAMILY SSF51905 142 335 1.3E-27 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 SUPERFAMILY SSF55424 340 460 7.56E-29 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RY45_09245 5659ccc82446b9e69c1e15b8acafd2e1 562 Gene3D G3DSA:3.50.50.60 3 356 8.8E-178 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00230 c262b30686c9d284443b1189f3b51c11 299 SUPERFAMILY SSF103481 199 287 2.75E-13 T 14-10-2018 RY45_00230 c262b30686c9d284443b1189f3b51c11 299 SUPERFAMILY SSF103481 37 137 2.09E-11 T 14-10-2018 RY45_00230 c262b30686c9d284443b1189f3b51c11 299 Pfam PF00892 EamA-like transporter family 147 280 9.0E-16 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_00230 c262b30686c9d284443b1189f3b51c11 299 Pfam PF00892 EamA-like transporter family 2 134 5.1E-19 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_09690 77fc0216aa3508628bf171fb313b48a0 180 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 137 155 - T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09690 77fc0216aa3508628bf171fb313b48a0 180 Gene3D G3DSA:1.10.10.1590 27 96 5.4E-16 T 14-10-2018 RY45_09690 77fc0216aa3508628bf171fb313b48a0 180 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 36 179 1.2E-45 T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09690 77fc0216aa3508628bf171fb313b48a0 180 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 38 179 7.1E-47 T 14-10-2018 RY45_09690 77fc0216aa3508628bf171fb313b48a0 180 PIRSF PIRSF000216 9 180 2.1E-47 T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09690 77fc0216aa3508628bf171fb313b48a0 180 Gene3D G3DSA:3.40.30.10 97 179 2.6E-20 T 14-10-2018 RY45_09690 77fc0216aa3508628bf171fb313b48a0 180 SUPERFAMILY SSF52833 29 179 4.25E-46 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 Gene3D G3DSA:3.30.1360.120 1 120 1.1E-37 T 14-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 215 349 1.4E-20 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 SUPERFAMILY SSF52540 71 371 1.67E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 SUPERFAMILY SSF116878 120 453 5.62E-51 T 14-10-2018 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 Pfam PF10396 GTP-binding protein TrmE N-terminus 5 119 8.6E-34 T 14-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 Gene3D G3DSA:3.40.50.300 216 381 1.1E-101 T 14-10-2018 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 Pfam PF12631 MnmE helical domain 122 450 2.4E-59 T 14-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 453 32.634 T 14-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 Pfam PF01926 50S ribosome-binding GTPase 217 306 1.3E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 Gene3D G3DSA:1.20.120.430 121 453 1.1E-101 T 14-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 RY45_22215 7f2fa94af72b63c09bac3e50e6feb8e4 453 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 10 453 9.6E-102 T 14-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 SUPERFAMILY SSF47364 293 371 4.19E-21 T 14-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 SMART SM00963 298 378 2.4E-22 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 321 594 63.937 T 14-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 SMART SM00962 393 594 3.3E-122 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 Pfam PF00448 SRP54-type protein, GTPase domain 394 593 4.8E-76 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 567 580 - T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 Gene3D G3DSA:3.40.50.300 393 582 5.4E-115 T 14-10-2018 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 321 593 4.3E-112 T 14-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 SUPERFAMILY SSF52540 389 594 6.55E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 Pfam PF02881 SRP54-type protein, helical bundle domain 311 372 1.3E-10 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 Gene3D G3DSA:1.20.120.140 295 592 5.4E-115 T 14-10-2018 RY45_02140 4a916e7061d0c552865ed3620cdff0e7 597 SMART SM00382 392 583 4.9E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_09385 49607fa64acede296cb87c8d693950eb 365 PIRSF PIRSF006487 1 364 2.0E-82 T 14-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RY45_09385 49607fa64acede296cb87c8d693950eb 365 Gene3D G3DSA:2.40.30.110 278 365 4.1E-34 T 14-10-2018 RY45_09385 49607fa64acede296cb87c8d693950eb 365 Gene3D G3DSA:4.10.1250.10 232 275 6.2E-27 T 14-10-2018 RY45_09385 49607fa64acede296cb87c8d693950eb 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 360 43.42 T 14-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RY45_09385 49607fa64acede296cb87c8d693950eb 365 Gene3D G3DSA:3.30.1360.120 7 231 1.3E-85 T 14-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RY45_09385 49607fa64acede296cb87c8d693950eb 365 SUPERFAMILY SSF101790 270 362 1.08E-26 T 14-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RY45_09385 49607fa64acede296cb87c8d693950eb 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 360 1.3E-148 T 14-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RY45_09385 49607fa64acede296cb87c8d693950eb 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 354 6.1E-20 T 14-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RY45_09385 49607fa64acede296cb87c8d693950eb 365 Gene3D G3DSA:3.30.70.1400 51 138 1.3E-85 T 14-10-2018 RY45_09385 49607fa64acede296cb87c8d693950eb 365 SUPERFAMILY SSF103025 3 277 3.61E-90 T 14-10-2018 RY45_09385 49607fa64acede296cb87c8d693950eb 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 253 1.4E-84 T 14-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RY45_00210 9cf97fe6b62d112f426925556e6b8310 237 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 1 234 35.875 T 14-10-2018 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 RY45_00210 9cf97fe6b62d112f426925556e6b8310 237 Gene3D G3DSA:1.10.510.10 142 237 1.6E-15 T 14-10-2018 RY45_00210 9cf97fe6b62d112f426925556e6b8310 237 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 29 232 2.2E-65 T 14-10-2018 RY45_00210 9cf97fe6b62d112f426925556e6b8310 237 SUPERFAMILY SSF56112 44 196 4.59E-19 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 SUPERFAMILY SSF100950 69 227 2.93E-24 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 Pfam PF08220 DeoR-like helix-turn-helix domain 4 59 1.9E-17 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 SMART SM01134 67 227 9.3E-50 T 14-10-2018 RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 Pfam PF00455 DeoR C terminal sensor domain 70 225 1.5E-39 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 ProSitePatterns PS00894 DeoR-type HTH domain signature. 4 38 - T 14-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 SMART SM00420 4 56 3.4E-19 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 SUPERFAMILY SSF46785 1 64 6.95E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 36 54 1.3E-6 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 22 36 1.3E-6 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_14900 bce2fa0efc2f1097507a52d73c274308 248 Gene3D G3DSA:1.10.10.10 10 110 2.7E-7 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 SUPERFAMILY SSF54913 1 112 6.35E-47 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 PIRSF PIRSF039144 1 112 1.6E-57 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 SMART SM00938 4 105 1.5E-69 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 PRINTS PR00340 P-II protein signature 23 41 3.7E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 PRINTS PR00340 P-II protein signature 83 103 3.7E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 PRINTS PR00340 P-II protein signature 2 17 3.7E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 PRINTS PR00340 P-II protein signature 52 75 3.7E-44 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 14-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.3E-45 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 Gene3D G3DSA:3.30.70.120 1 112 1.6E-49 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_03950 adcd5e5c60b440160f5b55427de7ecc6 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 14-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RY45_20500 e5749db2f2157eb27820382d49837605 288 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 283 41.076 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 RY45_20500 e5749db2f2157eb27820382d49837605 288 Gene3D G3DSA:3.40.50.300 1 166 7.9E-6 T 14-10-2018 RY45_20500 e5749db2f2157eb27820382d49837605 288 SUPERFAMILY SSF52540 1 154 1.64E-10 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20500 e5749db2f2157eb27820382d49837605 288 PIRSF PIRSF005052 1 286 9.2E-110 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 RY45_20500 e5749db2f2157eb27820382d49837605 288 Pfam PF03668 P-loop ATPase protein family 1 283 2.1E-111 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 42.684 T 14-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 SMART SM00917 369 500 4.7E-36 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 Gene3D G3DSA:3.30.160.270 394 501 2.9E-9 T 14-10-2018 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 1.7E-238 T 14-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 SUPERFAMILY SSF110921 391 499 1.15E-23 T 14-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 8.4E-35 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 Pfam PF00682 HMGL-like 4 273 2.6E-98 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 Gene3D G3DSA:3.20.20.70 1 277 4.7E-105 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 Gene3D G3DSA:1.10.238.260 280 393 8.2E-31 T 14-10-2018 RY45_04915 1565a2e9cacd9ae905cb8df820055a67 524 SUPERFAMILY SSF51569 1 291 4.03E-98 T 14-10-2018 RY45_01610 4ab287fd0b17f820634bc5c2b247acfe 273 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 269 32.256 T 14-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RY45_01610 4ab287fd0b17f820634bc5c2b247acfe 273 SUPERFAMILY SSF53223 1 101 2.3E-30 T 14-10-2018 RY45_01610 4ab287fd0b17f820634bc5c2b247acfe 273 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 270 4.4E-82 T 14-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RY45_01610 4ab287fd0b17f820634bc5c2b247acfe 273 Gene3D G3DSA:3.40.50.720 115 236 3.2E-81 T 14-10-2018 RY45_01610 4ab287fd0b17f820634bc5c2b247acfe 273 Gene3D G3DSA:3.40.50.10860 6 257 3.2E-81 T 14-10-2018 RY45_01610 4ab287fd0b17f820634bc5c2b247acfe 273 SUPERFAMILY SSF51735 102 267 1.54E-41 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01610 4ab287fd0b17f820634bc5c2b247acfe 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 6.0E-25 T 14-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RY45_01610 4ab287fd0b17f820634bc5c2b247acfe 273 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 116 191 8.8E-11 T 14-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 2.8E-57 T 14-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 Gene3D G3DSA:1.10.1660.10 1 129 3.3E-38 T 14-10-2018 RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 SMART SM00422 2 71 5.4E-32 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 SUPERFAMILY SSF46955 2 118 8.06E-35 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 Pfam PF00376 MerR family regulatory protein 3 40 4.1E-16 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 Pfam PF09278 MerR, DNA binding 46 110 3.1E-20 T 14-10-2018 IPR015358 Transcription regulator MerR, DNA binding RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 9.2E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 9.2E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_04710 f7cdc1d56c83cb68347318beec81c6d6 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 9.2E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 SUPERFAMILY SSF55347 156 309 2.06E-48 T 14-10-2018 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 147 8.4E-26 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 165 312 1.1E-12 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 Gene3D G3DSA:3.30.360.10 155 313 1.3E-113 T 14-10-2018 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 SUPERFAMILY SSF51735 3 178 5.97E-39 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 151 167 - T 14-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 SMART SM00859 3 148 5.2E-45 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 335 37.922 T 14-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 Gene3D G3DSA:3.40.50.720 6 329 1.3E-113 T 14-10-2018 RY45_03405 3bdd97b93e4a5f155b8d9ac4c2aaa4d5 335 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 334 4.8E-112 T 14-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_14745 7c6b9c5c0c50ae29ae38ed38f4c9ef1a 111 SMART SM00073 13 111 0.0098 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_14745 7c6b9c5c0c50ae29ae38ed38f4c9ef1a 111 SUPERFAMILY SSF47226 2 110 1.57E-26 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_14745 7c6b9c5c0c50ae29ae38ed38f4c9ef1a 111 Gene3D G3DSA:1.20.120.160 1 111 1.9E-26 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_14745 7c6b9c5c0c50ae29ae38ed38f4c9ef1a 111 Pfam PF01627 Hpt domain 25 98 3.5E-13 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 Gene3D G3DSA:3.50.50.60 6 365 4.6E-132 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 SUPERFAMILY SSF51905 1 367 2.1E-34 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 475 5.1E-9 T 14-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 10 27 - T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 Pfam PF01266 FAD dependent oxidoreductase 6 323 9.7E-47 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 SUPERFAMILY SSF54373 226 319 3.41E-5 T 14-10-2018 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 Gene3D G3DSA:3.30.9.10 83 320 4.6E-132 T 14-10-2018 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 46 2.8E-29 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 79 91 2.8E-29 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 18 28 2.8E-29 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 2.8E-29 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 2.8E-29 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 5 17 2.8E-29 T 14-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_09045 0e06d3e4aed635ed9b296caaf57704b3 495 Gene3D G3DSA:1.10.8.870 392 456 5.0E-13 T 14-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RY45_10410 a4f927d5f45797b1870fd67697035594 282 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 278 3.3E-85 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 RY45_10410 a4f927d5f45797b1870fd67697035594 282 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site RY45_10410 a4f927d5f45797b1870fd67697035594 282 Gene3D G3DSA:1.20.1080.10 1 268 4.9E-97 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RY45_10410 a4f927d5f45797b1870fd67697035594 282 Pfam PF01226 Formate/nitrite transporter 19 276 6.5E-75 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 RY45_10410 a4f927d5f45797b1870fd67697035594 282 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site RY45_10410 a4f927d5f45797b1870fd67697035594 282 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 15 279 3.6E-125 T 14-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 RY45_11250 dd1267b4560d310aee14c0578f958a11 327 SUPERFAMILY SSF55681 92 327 1.18E-82 T 14-10-2018 RY45_11250 dd1267b4560d310aee14c0578f958a11 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 327 1.6E-115 T 14-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RY45_11250 dd1267b4560d310aee14c0578f958a11 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.524 T 14-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RY45_11250 dd1267b4560d310aee14c0578f958a11 327 Gene3D G3DSA:3.30.930.10 8 327 1.4E-124 T 14-10-2018 RY45_11250 dd1267b4560d310aee14c0578f958a11 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 2.9E-26 T 14-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RY45_11250 dd1267b4560d310aee14c0578f958a11 327 SUPERFAMILY SSF46589 14 99 3.4E-23 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RY45_11250 dd1267b4560d310aee14c0578f958a11 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 5.9E-107 T 14-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RY45_16395 483c7566d886453f6a03d116b320e07c 489 Gene3D G3DSA:3.40.605.10 10 452 2.8E-145 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_16395 483c7566d886453f6a03d116b320e07c 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RY45_16395 483c7566d886453f6a03d116b320e07c 489 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 4 489 58.314 T 14-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 RY45_16395 483c7566d886453f6a03d116b320e07c 489 Pfam PF00171 Aldehyde dehydrogenase family 12 463 7.0E-123 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_16395 483c7566d886453f6a03d116b320e07c 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RY45_16395 483c7566d886453f6a03d116b320e07c 489 SUPERFAMILY SSF53720 6 458 9.69E-126 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_16395 483c7566d886453f6a03d116b320e07c 489 Gene3D G3DSA:3.40.309.10 250 440 2.8E-145 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_16395 483c7566d886453f6a03d116b320e07c 489 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 6 489 4.9E-254 T 14-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 RY45_11840 4fecd3509e7af700d34ef2a3b94b749c 233 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 6 221 4.4E-65 T 14-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 RY45_11840 4fecd3509e7af700d34ef2a3b94b749c 233 SUPERFAMILY SSF53067 111 219 8.42E-24 T 14-10-2018 RY45_11840 4fecd3509e7af700d34ef2a3b94b749c 233 SUPERFAMILY SSF53067 5 107 6.47E-31 T 14-10-2018 RY45_11840 4fecd3509e7af700d34ef2a3b94b749c 233 Gene3D G3DSA:3.30.420.40 97 190 8.3E-77 T 14-10-2018 RY45_11840 4fecd3509e7af700d34ef2a3b94b749c 233 Pfam PF00814 Glycoprotease family 31 156 1.3E-33 T 14-10-2018 IPR000905 Gcp-like domain RY45_11840 4fecd3509e7af700d34ef2a3b94b749c 233 Gene3D G3DSA:3.30.420.40 6 221 8.3E-77 T 14-10-2018 RY45_10710 a5dabea467b06e861dec3bf8fe36271d 507 Pfam PF05683 Fumarase C-terminus 288 490 4.4E-84 T 14-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RY45_10710 a5dabea467b06e861dec3bf8fe36271d 507 SUPERFAMILY SSF117457 315 489 5.62E-64 T 14-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 RY45_10710 a5dabea467b06e861dec3bf8fe36271d 507 Pfam PF05681 Fumarate hydratase (Fumerase) 11 284 6.6E-99 T 14-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RY45_10710 a5dabea467b06e861dec3bf8fe36271d 507 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 11 282 1.3E-64 T 14-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RY45_10710 a5dabea467b06e861dec3bf8fe36271d 507 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 325 489 2.3E-50 T 14-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RY45_10710 a5dabea467b06e861dec3bf8fe36271d 507 PIRSF PIRSF001394 1 506 2.3E-217 T 14-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 RY45_10710 a5dabea467b06e861dec3bf8fe36271d 507 Gene3D G3DSA:3.20.130.10 313 490 6.9E-62 T 14-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Gene3D G3DSA:3.30.450.20 366 510 3.3E-19 T 14-10-2018 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Gene3D G3DSA:1.20.120.50 678 809 1.3E-23 T 14-10-2018 IPR035938 Hemerythrin-like superfamily RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 SMART SM00091 380 447 6.7E-6 T 14-10-2018 IPR000014 PAS domain RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 682 805 3.7E-25 T 14-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 SMART SM00267 502 669 1.0E-71 T 14-10-2018 IPR000160 GGDEF domain RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 SUPERFAMILY SSF55785 367 500 3.54E-16 T 14-10-2018 IPR035965 PAS domain superfamily RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 377 508 9.0E-17 T 14-10-2018 IPR000014 PAS domain RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 SUPERFAMILY SSF47188 679 805 1.96E-23 T 14-10-2018 IPR035938 Hemerythrin-like superfamily RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Pfam PF00990 Diguanylate cyclase, GGDEF domain 513 664 1.8E-50 T 14-10-2018 IPR000160 GGDEF domain RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 511 668 4.8E-46 T 14-10-2018 IPR000160 GGDEF domain RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Gene3D G3DSA:3.30.70.270 511 677 1.2E-61 T 14-10-2018 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Pfam PF08448 PAS fold 389 503 3.3E-6 T 14-10-2018 IPR013656 PAS fold-4 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Gene3D G3DSA:3.40.190.10 39 299 2.7E-64 T 14-10-2018 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 SUPERFAMILY SSF53850 37 260 1.96E-27 T 14-10-2018 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Pfam PF09084 NMT1/THI5 like 47 251 5.0E-42 T 14-10-2018 IPR015168 SsuA/THI5-like RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Pfam PF01814 Hemerythrin HHE cation binding domain 692 805 3.2E-7 T 14-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 SUPERFAMILY SSF55073 518 670 8.83E-52 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 ProSitePatterns PS00550 Hemerythrin family signature. 735 758 - T 14-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 Gene3D G3DSA:3.40.190.10 117 213 2.7E-64 T 14-10-2018 RY45_15325 360cb496a4cdb1a0f4e48a8231b3d871 809 SMART SM00086 460 502 6.9E-4 T 14-10-2018 IPR001610 PAC motif RY45_09685 bf23106218714b823a5de69f2334b8e2 455 SMART SM00928 346 391 2.8E-21 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 SUPERFAMILY SSF140490 343 435 5.75E-29 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 SUPERFAMILY SSF142984 258 341 1.16E-18 T 14-10-2018 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 62 234 2.3E-49 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 21 433 3.2E-192 T 14-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 Gene3D G3DSA:3.40.50.11540 67 246 1.9E-77 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 Pfam PF10531 SLBB domain 263 309 3.6E-7 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 359 370 - T 14-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 182 197 - T 14-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 SUPERFAMILY SSF142019 28 252 5.62E-84 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 349 431 2.0E-23 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 Gene3D G3DSA:3.10.20.600 251 343 3.6E-22 T 14-10-2018 RY45_09685 bf23106218714b823a5de69f2334b8e2 455 Gene3D G3DSA:1.20.1440.230 344 444 4.1E-25 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_05555 bd11f1d2d71b720b5032bc6992127637 284 SMART SM00978 154 283 1.8E-37 T 14-10-2018 IPR007379 Tim44-like domain RY45_05555 bd11f1d2d71b720b5032bc6992127637 284 Pfam PF04280 Tim44-like domain 162 283 8.7E-19 T 14-10-2018 IPR007379 Tim44-like domain RY45_05555 bd11f1d2d71b720b5032bc6992127637 284 SUPERFAMILY SSF54427 161 283 1.62E-22 T 14-10-2018 IPR032710 NTF2-like domain superfamily RY45_05555 bd11f1d2d71b720b5032bc6992127637 284 Gene3D G3DSA:3.10.450.240 161 283 4.2E-13 T 14-10-2018 RY45_03760 640c6dc26b40a2b832b87db5a2d9d855 155 Pfam PF02082 Transcriptional regulator 1 83 1.0E-22 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type RY45_03760 640c6dc26b40a2b832b87db5a2d9d855 155 Gene3D G3DSA:1.10.10.10 1 140 2.9E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03760 640c6dc26b40a2b832b87db5a2d9d855 155 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 129 6.1E-34 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type RY45_03760 640c6dc26b40a2b832b87db5a2d9d855 155 SUPERFAMILY SSF46785 2 133 4.69E-33 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Gene3D G3DSA:3.30.70.1320 134 334 0.0 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1032 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Gene3D G3DSA:1.20.1640.10 9 511 0.0 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Gene3D G3DSA:3.30.70.1440 669 866 0.0 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 SUPERFAMILY SSF82693 564 671 1.73E-22 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 SUPERFAMILY SSF82714 184 273 2.35E-19 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Gene3D G3DSA:1.20.1640.10 512 1023 0.0 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 4.7E-101 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 SUPERFAMILY SSF82693 673 857 3.14E-23 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 SUPERFAMILY SSF82693 39 132 1.26E-26 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 SUPERFAMILY SSF82866 298 499 5.1E-51 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Gene3D G3DSA:3.30.70.1430 566 668 0.0 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Pfam PF00873 AcrB/AcrD/AcrF family 2 1026 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Gene3D G3DSA:3.30.2090.10 721 809 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 Gene3D G3DSA:3.30.70.1430 39 817 0.0 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 SUPERFAMILY SSF82866 831 1027 7.46E-45 T 14-10-2018 RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 SUPERFAMILY SSF82714 722 807 2.22E-22 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15285 029072fb37585ee016bb2a7f82d966fb 1042 SUPERFAMILY SSF82693 137 332 4.24E-27 T 14-10-2018 RY45_16360 c278e572ce67ddb8a08fb4712fc18131 541 SMART SM00642 15 398 1.5E-122 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_16360 c278e572ce67ddb8a08fb4712fc18131 541 Gene3D G3DSA:3.90.400.10 107 174 8.0E-160 T 14-10-2018 RY45_16360 c278e572ce67ddb8a08fb4712fc18131 541 Pfam PF00128 Alpha amylase, catalytic domain 30 359 5.3E-97 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_16360 c278e572ce67ddb8a08fb4712fc18131 541 Pfam PF11941 Domain of unknown function (DUF3459) 442 535 4.1E-10 T 14-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) RY45_16360 c278e572ce67ddb8a08fb4712fc18131 541 Gene3D G3DSA:3.20.20.80 10 451 8.0E-160 T 14-10-2018 RY45_16360 c278e572ce67ddb8a08fb4712fc18131 541 Gene3D G3DSA:2.60.40.1180 460 539 4.4E-5 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_16360 c278e572ce67ddb8a08fb4712fc18131 541 SUPERFAMILY SSF51011 459 537 1.33E-5 T 14-10-2018 RY45_16360 c278e572ce67ddb8a08fb4712fc18131 541 SUPERFAMILY SSF51445 7 456 9.51E-131 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Pfam PF01590 GAF domain 29 157 3.9E-10 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Gene3D G3DSA:3.30.450.20 330 450 3.0E-17 T 14-10-2018 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Gene3D G3DSA:3.30.70.270 582 747 5.1E-53 T 14-10-2018 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SUPERFAMILY SSF55073 589 745 4.71E-44 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Pfam PF08448 PAS fold 471 574 2.2E-12 T 14-10-2018 IPR013656 PAS fold-4 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SMART SM00065 26 168 1.2E-5 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SUPERFAMILY SSF55781 30 170 2.75E-21 T 14-10-2018 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SUPERFAMILY SSF55785 192 301 5.06E-22 T 14-10-2018 IPR035965 PAS domain superfamily RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SUPERFAMILY SSF55785 331 450 2.44E-17 T 14-10-2018 IPR035965 PAS domain superfamily RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Gene3D G3DSA:3.30.450.20 171 328 2.0E-25 T 14-10-2018 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Pfam PF00989 PAS fold 345 449 7.3E-11 T 14-10-2018 IPR013767 PAS fold GO:0006355 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Gene3D G3DSA:3.30.450.20 456 581 3.2E-18 T 14-10-2018 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SMART SM00091 179 245 3.5E-8 T 14-10-2018 IPR000014 PAS domain RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SMART SM00091 464 530 5.2E-9 T 14-10-2018 IPR000014 PAS domain RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SMART SM00091 344 410 1.6E-6 T 14-10-2018 IPR000014 PAS domain RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 580 744 4.0E-41 T 14-10-2018 IPR000160 GGDEF domain RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Pfam PF00990 Diguanylate cyclase, GGDEF domain 584 742 1.1E-47 T 14-10-2018 IPR000160 GGDEF domain RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Gene3D G3DSA:3.30.450.40 17 170 3.1E-11 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SMART SM00267 573 747 1.5E-59 T 14-10-2018 IPR000160 GGDEF domain RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SUPERFAMILY SSF55785 449 571 1.22E-17 T 14-10-2018 IPR035965 PAS domain superfamily RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 Pfam PF08447 PAS fold 203 274 1.1E-13 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SMART SM00086 412 452 32.0 T 14-10-2018 IPR001610 PAC motif RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 SMART SM00086 252 293 1.6E-4 T 14-10-2018 IPR001610 PAC motif RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 342 455 8.4E-13 T 14-10-2018 IPR000014 PAS domain RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 177 300 4.5E-22 T 14-10-2018 IPR000014 PAS domain RY45_18870 586575c43fe7e3f31adfe53b55546ac4 748 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 463 580 2.0E-10 T 14-10-2018 IPR000014 PAS domain RY45_11435 832b48354f2567abffa50ddc47416d07 178 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 177 41.105 T 14-10-2018 IPR009809 Cell division protein ZapC RY45_11435 832b48354f2567abffa50ddc47416d07 178 Pfam PF07126 Cell-division protein ZapC 3 167 2.0E-64 T 14-10-2018 IPR009809 Cell division protein ZapC RY45_11435 832b48354f2567abffa50ddc47416d07 178 PIRSF PIRSF010252 1 178 1.7E-69 T 14-10-2018 IPR009809 Cell division protein ZapC RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 213 376 2.3E-24 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 156 3.4E-20 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 468 4.4E-179 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 Pfam PF01926 50S ribosome-binding GTPase 5 119 3.1E-28 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 Pfam PF01926 50S ribosome-binding GTPase 215 332 7.5E-25 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.4E-10 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 9.4E-10 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 388 467 2.7E-26 T 14-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 PIRSF PIRSF006485 1 476 2.4E-179 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 Gene3D G3DSA:3.30.300.20 388 470 1.5E-20 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 SUPERFAMILY SSF52540 4 164 4.03E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 Hamap MF_00195 GTPase Der [der]. 2 471 38.754 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 Gene3D G3DSA:3.40.50.300 210 385 1.6E-50 T 14-10-2018 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 Gene3D G3DSA:3.40.50.300 1 159 2.4E-41 T 14-10-2018 RY45_09610 b5041246e47fc4bfbf1e1a3fbc4ccadb 499 SUPERFAMILY SSF52540 138 474 4.48E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 Pfam PF00675 Insulinase (Peptidase family M16) 535 637 2.3E-7 T 14-10-2018 IPR011765 Peptidase M16, N-terminal RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 Pfam PF00675 Insulinase (Peptidase family M16) 47 185 3.4E-17 T 14-10-2018 IPR011765 Peptidase M16, N-terminal RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 SUPERFAMILY SSF63411 267 453 9.5E-24 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 Pfam PF05193 Peptidase M16 inactive domain 205 381 1.1E-21 T 14-10-2018 IPR007863 Peptidase M16, C-terminal RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 Pfam PF05193 Peptidase M16 inactive domain 664 834 3.4E-10 T 14-10-2018 IPR007863 Peptidase M16, C-terminal RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 Gene3D G3DSA:3.30.830.10 514 703 1.4E-25 T 14-10-2018 RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 Gene3D G3DSA:3.30.830.10 718 908 5.0E-28 T 14-10-2018 RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 SUPERFAMILY SSF63411 35 252 3.67E-48 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 Gene3D G3DSA:3.30.830.10 262 457 1.8E-25 T 14-10-2018 RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 SUPERFAMILY SSF63411 499 700 7.86E-30 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 Gene3D G3DSA:3.30.830.10 33 256 4.4E-60 T 14-10-2018 RY45_10430 f4e6e49f9d2f73f173738489e154d304 925 SUPERFAMILY SSF63411 726 904 3.33E-24 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_13310 59911526047883e7f12699d5b99624e7 260 Pfam PF00561 alpha/beta hydrolase fold 15 116 9.8E-23 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_13310 59911526047883e7f12699d5b99624e7 260 PRINTS PR00412 Epoxide hydrolase signature 20 38 4.6E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_13310 59911526047883e7f12699d5b99624e7 260 PRINTS PR00412 Epoxide hydrolase signature 200 216 4.6E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_13310 59911526047883e7f12699d5b99624e7 260 PRINTS PR00412 Epoxide hydrolase signature 232 254 4.6E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_13310 59911526047883e7f12699d5b99624e7 260 Gene3D G3DSA:3.40.50.1820 4 259 7.3E-46 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_13310 59911526047883e7f12699d5b99624e7 260 SUPERFAMILY SSF53474 10 255 2.96E-48 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 245 4.7E-110 T 14-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 Gene3D G3DSA:3.40.50.720 1 245 1.5E-76 T 14-10-2018 RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 243 4.4E-57 T 14-10-2018 RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 6.5E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 6.5E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 6.5E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 184 4.4E-5 T 14-10-2018 RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 SUPERFAMILY SSF51735 2 245 8.54E-77 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.6E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 3.6E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.6E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.6E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.6E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_10455 13ed9d4006b80a2c116e058c17dfac0a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.6E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_15465 65c5018665454a606548eb84412cb174 425 Gene3D G3DSA:3.30.9.10 121 342 8.6E-72 T 14-10-2018 RY45_15465 65c5018665454a606548eb84412cb174 425 Gene3D G3DSA:3.50.50.60 29 380 8.6E-72 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_15465 65c5018665454a606548eb84412cb174 425 SUPERFAMILY SSF51905 28 411 4.32E-41 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_15465 65c5018665454a606548eb84412cb174 425 Pfam PF01266 FAD dependent oxidoreductase 29 379 1.0E-53 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RY45_09860 3e686197dc95a4f14d48d5b0f657c9fc 233 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 7 224 2.7E-58 T 14-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_09860 3e686197dc95a4f14d48d5b0f657c9fc 233 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 3 231 39.581 T 14-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_09860 3e686197dc95a4f14d48d5b0f657c9fc 233 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 57 70 - T 14-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_09860 3e686197dc95a4f14d48d5b0f657c9fc 233 SUPERFAMILY SSF51366 2 229 5.3E-75 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RY45_09860 3e686197dc95a4f14d48d5b0f657c9fc 233 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 222 7.1E-50 T 14-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_09860 3e686197dc95a4f14d48d5b0f657c9fc 233 SMART SM00934 5 226 1.4E-96 T 14-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_09860 3e686197dc95a4f14d48d5b0f657c9fc 233 Gene3D G3DSA:3.20.20.70 2 232 4.9E-81 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_09375 4af73c3957a059adde7802b5360808e1 405 Pfam PF01494 FAD binding domain 9 330 1.1E-18 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 RY45_09375 4af73c3957a059adde7802b5360808e1 405 SUPERFAMILY SSF51905 8 388 2.89E-48 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09375 4af73c3957a059adde7802b5360808e1 405 Gene3D G3DSA:3.30.9.50 87 276 6.1E-96 T 14-10-2018 RY45_09375 4af73c3957a059adde7802b5360808e1 405 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 301 314 - T 14-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 RY45_09375 4af73c3957a059adde7802b5360808e1 405 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 10 396 3.7E-123 T 14-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 RY45_09375 4af73c3957a059adde7802b5360808e1 405 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 10 397 5.7E-130 T 14-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 RY45_09375 4af73c3957a059adde7802b5360808e1 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 3.7E-15 T 14-10-2018 RY45_09375 4af73c3957a059adde7802b5360808e1 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 3.7E-15 T 14-10-2018 RY45_09375 4af73c3957a059adde7802b5360808e1 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 163 178 3.7E-15 T 14-10-2018 RY45_09375 4af73c3957a059adde7802b5360808e1 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 3.7E-15 T 14-10-2018 RY45_09375 4af73c3957a059adde7802b5360808e1 405 Gene3D G3DSA:3.50.50.60 10 345 6.1E-96 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 SMART SM00382 32 231 1.0E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 SMART SM00382 339 539 1.3E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 Pfam PF00005 ABC transporter 331 484 7.2E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 Gene3D G3DSA:3.40.50.300 302 573 2.7E-85 T 14-10-2018 RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 Gene3D G3DSA:3.40.50.300 1 277 4.6E-84 T 14-10-2018 RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 ProSitePatterns PS00211 ABC transporters family signature. 456 470 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 SUPERFAMILY SSF52540 3 253 1.16E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 SUPERFAMILY SSF52540 319 554 6.86E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 535 567 0.0056 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 263 3.0E-6 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_17145 c897a06de9fd1fafaafcd983a3938ac7 574 Pfam PF00005 ABC transporter 24 181 6.8E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 Pfam PF02769 AIR synthase related protein, C-terminal domain 147 296 5.6E-10 T 14-10-2018 IPR010918 PurM-like, C-terminal domain RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 Pfam PF00586 AIR synthase related protein, N-terminal domain 26 134 2.2E-23 T 14-10-2018 IPR016188 PurM-like, N-terminal domain RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 Gene3D G3DSA:3.30.1330.10 1 141 2.0E-48 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 PIRSF PIRSF005303 1 318 5.6E-86 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 SUPERFAMILY SSF56042 140 298 3.44E-38 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 SUPERFAMILY SSF55326 1 135 4.71E-37 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 318 29.321 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 2 318 7.0E-110 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RY45_17155 e7564a412d578bd1cfcaa3a7341c3a54 319 Gene3D G3DSA:3.90.650.10 142 319 9.4E-57 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 Gene3D G3DSA:3.40.190.290 93 302 1.8E-14 T 14-10-2018 RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 Pfam PF03466 LysR substrate binding domain 93 295 4.4E-21 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.8E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.8E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.8E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 8.6E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 SUPERFAMILY SSF46785 5 90 4.44E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 SUPERFAMILY SSF53850 87 293 2.33E-29 T 14-10-2018 RY45_00625 e8b9e61deb6e3fe5305bc13a98a49ac4 302 Gene3D G3DSA:1.10.10.10 2 88 4.1E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04410 76fc4608d6f98c5f74b176af3da28bff 359 PIRSF PIRSF001359 14 359 1.4E-95 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04410 76fc4608d6f98c5f74b176af3da28bff 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04410 76fc4608d6f98c5f74b176af3da28bff 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 5 358 7.6E-184 T 14-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 RY45_04410 76fc4608d6f98c5f74b176af3da28bff 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 18 355 9.7E-89 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04410 76fc4608d6f98c5f74b176af3da28bff 359 SUPERFAMILY SSF51569 5 357 7.33E-129 T 14-10-2018 RY45_04410 76fc4608d6f98c5f74b176af3da28bff 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04410 76fc4608d6f98c5f74b176af3da28bff 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 15 357 1.2E-111 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04410 76fc4608d6f98c5f74b176af3da28bff 359 Gene3D G3DSA:3.20.20.70 3 359 3.1E-147 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 1.8E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 1.8E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 ProSitePatterns PS01081 TetR-type HTH domain signature. 21 52 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 PRINTS PR00400 Tetracycline repressor protein signature 75 94 1.2E-52 T 14-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 PRINTS PR00400 Tetracycline repressor protein signature 187 201 1.2E-52 T 14-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 PRINTS PR00400 Tetracycline repressor protein signature 95 118 1.2E-52 T 14-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 PRINTS PR00400 Tetracycline repressor protein signature 21 44 1.2E-52 T 14-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 PRINTS PR00400 Tetracycline repressor protein signature 130 149 1.2E-52 T 14-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 Gene3D G3DSA:1.10.10.60 1 63 2.6E-29 T 14-10-2018 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 1.4E-15 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 68 204 8.3E-46 T 14-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 Gene3D G3DSA:1.10.357.10 64 205 6.3E-34 T 14-10-2018 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 SUPERFAMILY SSF46689 4 63 2.26E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_02950 f7619a99a2b6ed5dda4c221fa362073b 219 SUPERFAMILY SSF48498 69 205 1.11E-34 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_07970 132ed26f6d498bfc6ec5ad843fc1e95f 115 Hamap MF_00460 Protein RnfH [rnfH]. 5 95 24.788 T 14-10-2018 IPR005346 RnfH protein RY45_07970 132ed26f6d498bfc6ec5ad843fc1e95f 115 Gene3D G3DSA:3.10.20.280 1 89 8.2E-34 T 14-10-2018 IPR037021 RnfH superfamily RY45_07970 132ed26f6d498bfc6ec5ad843fc1e95f 115 Pfam PF03658 RnfH family Ubiquitin 6 87 6.7E-34 T 14-10-2018 IPR005346 RnfH protein RY45_07970 132ed26f6d498bfc6ec5ad843fc1e95f 115 SUPERFAMILY SSF54285 4 79 1.87E-25 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RY45_04525 1dbc36723ba2398d6088c3f348d30985 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 283 4.0E-140 T 14-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 RY45_04525 1dbc36723ba2398d6088c3f348d30985 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04525 1dbc36723ba2398d6088c3f348d30985 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 1.4E-100 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04525 1dbc36723ba2398d6088c3f348d30985 284 SUPERFAMILY SSF51569 3 283 9.67E-98 T 14-10-2018 RY45_04525 1dbc36723ba2398d6088c3f348d30985 284 Gene3D G3DSA:3.20.20.70 1 284 2.8E-106 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_04525 1dbc36723ba2398d6088c3f348d30985 284 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 84 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04525 1dbc36723ba2398d6088c3f348d30985 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 283 8.8E-98 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_04525 1dbc36723ba2398d6088c3f348d30985 284 PIRSF PIRSF001359 1 284 2.9E-106 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RY45_12105 0ac6a2c4c0a928883a339f2a08d8b67e 247 Pfam PF11859 Protein of unknown function (DUF3379) 1 242 1.1E-85 T 14-10-2018 IPR021806 Protein of unknown function DUF3379 RY45_17250 02bc630d4f818010183d6ebab4fe1a15 149 SUPERFAMILY SSF52304 3 145 3.4E-63 T 14-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RY45_17250 02bc630d4f818010183d6ebab4fe1a15 149 Gene3D G3DSA:3.40.50.9100 1 149 3.5E-68 T 14-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RY45_17250 02bc630d4f818010183d6ebab4fe1a15 149 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 20 145 3.0E-66 T 14-10-2018 RY45_17250 02bc630d4f818010183d6ebab4fe1a15 149 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 149 75.992 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RY45_17250 02bc630d4f818010183d6ebab4fe1a15 149 PIRSF PIRSF001399 3 149 4.0E-61 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RY45_17250 02bc630d4f818010183d6ebab4fe1a15 149 Pfam PF01220 Dehydroquinase class II 6 142 9.2E-63 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RY45_17250 02bc630d4f818010183d6ebab4fe1a15 149 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 14-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RY45_17250 02bc630d4f818010183d6ebab4fe1a15 149 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 2.5E-64 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 SUPERFAMILY SSF52540 939 1173 3.04E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 ProSitePatterns PS00211 ABC transporters family signature. 512 526 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 Gene3D G3DSA:3.40.50.300 932 1179 2.0E-59 T 14-10-2018 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 Gene3D G3DSA:1.20.1560.10 639 931 4.9E-27 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 Gene3D G3DSA:3.40.50.300 378 603 1.5E-65 T 14-10-2018 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 Pfam PF00664 ABC transporter transmembrane region 80 346 2.3E-18 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 Pfam PF00664 ABC transporter transmembrane region 675 886 8.7E-16 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 SUPERFAMILY SSF90123 641 932 4.45E-41 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 Gene3D G3DSA:1.20.1560.10 63 377 1.2E-22 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 Pfam PF00005 ABC transporter 405 539 1.7E-20 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 SUPERFAMILY SSF52540 389 593 4.51E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 Pfam PF00005 ABC transporter 963 1106 9.5E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 SMART SM00382 414 589 1.3E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 SMART SM00382 972 1152 9.9E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17875 0fc2c9dc60fe3ee24d0a58613466a26b 1186 SUPERFAMILY SSF90123 71 375 6.54E-33 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_16895 de7ac532647735a3a944fb5a47e47dba 172 Pfam PF00258 Flavodoxin 5 160 3.3E-24 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RY45_16895 de7ac532647735a3a944fb5a47e47dba 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 168 1.2E-68 T 14-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 RY45_16895 de7ac532647735a3a944fb5a47e47dba 172 Gene3D G3DSA:3.40.50.360 1 172 1.4E-48 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_16895 de7ac532647735a3a944fb5a47e47dba 172 SUPERFAMILY SSF52218 1 168 1.92E-47 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_16895 de7ac532647735a3a944fb5a47e47dba 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 14-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RY45_16895 de7ac532647735a3a944fb5a47e47dba 172 PIRSF PIRSF038996 1 171 3.6E-57 T 14-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 RY45_16655 2f87fbb60076ebdd07e18df05592426e 318 Gene3D G3DSA:3.40.50.720 25 314 1.8E-108 T 14-10-2018 RY45_16655 2f87fbb60076ebdd07e18df05592426e 318 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 287 6.6E-55 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RY45_16655 2f87fbb60076ebdd07e18df05592426e 318 SUPERFAMILY SSF51735 101 288 1.93E-54 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_16655 2f87fbb60076ebdd07e18df05592426e 318 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_16655 2f87fbb60076ebdd07e18df05592426e 318 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 33 315 1.9E-22 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RY45_16655 2f87fbb60076ebdd07e18df05592426e 318 Gene3D G3DSA:3.40.50.720 97 286 1.8E-108 T 14-10-2018 RY45_16655 2f87fbb60076ebdd07e18df05592426e 318 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_16655 2f87fbb60076ebdd07e18df05592426e 318 SUPERFAMILY SSF52283 4 137 5.29E-28 T 14-10-2018 RY45_21200 144b70f3d13adfb4ab630e54ba77e9ad 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_21200 144b70f3d13adfb4ab630e54ba77e9ad 234 Gene3D G3DSA:3.40.50.720 1 232 5.6E-46 T 14-10-2018 RY45_21200 144b70f3d13adfb4ab630e54ba77e9ad 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 1.4E-7 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21200 144b70f3d13adfb4ab630e54ba77e9ad 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 1.4E-7 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21200 144b70f3d13adfb4ab630e54ba77e9ad 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.4E-7 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21200 144b70f3d13adfb4ab630e54ba77e9ad 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 228 9.3E-26 T 14-10-2018 RY45_21200 144b70f3d13adfb4ab630e54ba77e9ad 234 SUPERFAMILY SSF51735 1 229 2.87E-40 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 SUPERFAMILY SSF56719 35 487 4.19E-152 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 Gene3D G3DSA:3.30.1360.40 242 335 2.3E-174 T 14-10-2018 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 Gene3D G3DSA:1.10.268.10 373 458 2.3E-174 T 14-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 466 6.3E-131 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 SMART SM00434 15 465 1.6E-222 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 SUPERFAMILY SSF101904 501 745 5.89E-53 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 651 695 1.6E-5 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 602 638 6.9 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 747 33.136 T 14-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 Gene3D G3DSA:3.90.199.10 36 485 2.3E-174 T 14-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 Gene3D G3DSA:2.120.10.90 504 763 4.7E-14 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RY45_19425 58d993ffce893ef065fe2cb59adadf0a 764 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 12 747 0.0 T 14-10-2018 RY45_04775 e067d6e91b712f38ca81b8d93639c25a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 91 113 8.2E-16 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 RY45_04775 e067d6e91b712f38ca81b8d93639c25a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 8.2E-16 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 RY45_04775 e067d6e91b712f38ca81b8d93639c25a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 281 300 8.2E-16 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 RY45_04775 e067d6e91b712f38ca81b8d93639c25a 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 253 270 8.2E-16 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 RY45_04775 e067d6e91b712f38ca81b8d93639c25a 374 Gene3D G3DSA:2.40.160.10 22 374 1.3E-93 T 14-10-2018 IPR023614 Porin domain superfamily RY45_04775 e067d6e91b712f38ca81b8d93639c25a 374 Pfam PF00267 Gram-negative porin 29 374 2.3E-57 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 RY45_04775 e067d6e91b712f38ca81b8d93639c25a 374 SUPERFAMILY SSF56935 22 374 2.69E-59 T 14-10-2018 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 Gene3D G3DSA:1.25.40.10 149 360 1.6E-17 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 Pfam PF14559 Tetratricopeptide repeat 252 307 2.7E-6 T 14-10-2018 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 Gene3D G3DSA:3.40.50.2300 7 148 3.6E-21 T 14-10-2018 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 SUPERFAMILY SSF52172 15 147 1.99E-23 T 14-10-2018 IPR011006 CheY-like superfamily RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 Gene3D G3DSA:1.25.40.10 446 510 2.3E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 Pfam PF13432 Tetratricopeptide repeat 462 503 0.015 T 14-10-2018 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 Pfam PF00072 Response regulator receiver domain 19 129 2.4E-14 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 SMART SM00028 456 489 0.011 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 SMART SM00028 241 274 43.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 SMART SM00028 275 308 81.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 SMART SM00028 207 240 110.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 SUPERFAMILY SSF48452 454 503 8.71E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 SMART SM00448 17 133 3.8E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15265 daa9402a28970dc6d4babb54ea9501ef 548 SUPERFAMILY SSF48452 178 301 8.07E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 14-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 188 321 1.6E-42 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 Gene3D G3DSA:3.40.50.970 1 180 6.9E-69 T 14-10-2018 RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 SUPERFAMILY SSF52467 182 341 9.48E-55 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 546 1.8E-210 T 14-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 1.3E-46 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 168 5.1E-57 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 SUPERFAMILY SSF52518 1 175 5.89E-62 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 SUPERFAMILY SSF52518 351 546 2.47E-61 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 Gene3D G3DSA:3.40.50.1220 188 343 5.2E-119 T 14-10-2018 RY45_21835 b52cda622d35b96b5d7c2d3525128e97 548 Gene3D G3DSA:3.40.50.970 344 522 5.2E-119 T 14-10-2018 RY45_17920 d0dc64a962df1f60d9e6093add169957 510 Pfam PF00563 EAL domain 262 497 2.7E-64 T 14-10-2018 IPR001633 EAL domain RY45_17920 d0dc64a962df1f60d9e6093add169957 510 Gene3D G3DSA:3.20.20.450 255 509 6.7E-83 T 14-10-2018 IPR035919 EAL domain superfamily RY45_17920 d0dc64a962df1f60d9e6093add169957 510 SMART SM00052 256 502 7.9E-97 T 14-10-2018 IPR001633 EAL domain RY45_17920 d0dc64a962df1f60d9e6093add169957 510 SUPERFAMILY SSF141868 262 509 3.53E-76 T 14-10-2018 IPR035919 EAL domain superfamily RY45_17920 d0dc64a962df1f60d9e6093add169957 510 Pfam PF12792 CSS motif domain associated with EAL 42 231 2.4E-39 T 14-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 Gene3D G3DSA:3.20.20.80 1 476 1.7E-174 T 14-10-2018 RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 Pfam PF00232 Glycosyl hydrolase family 1 7 472 4.5E-171 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 292 306 5.4E-17 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 440 452 5.4E-17 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 395 406 5.4E-17 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 374 382 5.4E-17 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 416 433 5.4E-17 T 14-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 SUPERFAMILY SSF51445 8 475 6.22E-168 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_12370 d9e65cf3ba4d0de3250c6465d4ab4c17 477 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 13 27 - T 14-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 Gene3D G3DSA:3.40.50.300 1043 1239 1.4E-77 T 14-10-2018 RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 Pfam PF00271 Helicase conserved C-terminal domain 1115 1225 6.1E-18 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 Gene3D G3DSA:3.40.50.10810 801 1035 6.6E-61 T 14-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 SUPERFAMILY SSF52540 816 1036 4.95E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 SUPERFAMILY SSF52540 1038 1275 4.32E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 Pfam PF00176 SNF2 family N-terminal domain 843 1104 2.9E-52 T 14-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 Gene3D G3DSA:1.20.120.850 1058 1267 1.4E-77 T 14-10-2018 RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 SMART SM00490 1143 1225 1.5E-19 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_14970 8693069c53682dd9deea6b0424a6d673 1280 SMART SM00487 827 1011 2.3E-29 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_01050 2ecf6da9b8ab8e7c03069dd0b9e77cb5 290 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 111 240 2.1E-6 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_01050 2ecf6da9b8ab8e7c03069dd0b9e77cb5 290 Gene3D G3DSA:3.40.190.10 65 237 2.8E-6 T 14-10-2018 RY45_01050 2ecf6da9b8ab8e7c03069dd0b9e77cb5 290 Gene3D G3DSA:3.40.190.10 103 205 2.8E-6 T 14-10-2018 RY45_01050 2ecf6da9b8ab8e7c03069dd0b9e77cb5 290 SUPERFAMILY SSF53850 36 244 2.39E-19 T 14-10-2018 RY45_13370 5c1c1f9f50f9aabef0d309df1bf39495 352 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 312 323 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13370 5c1c1f9f50f9aabef0d309df1bf39495 352 SUPERFAMILY SSF46548 210 340 7.32E-16 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_13370 5c1c1f9f50f9aabef0d309df1bf39495 352 Pfam PF17179 4Fe-4S dicluster domain 229 326 5.2E-31 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13370 5c1c1f9f50f9aabef0d309df1bf39495 352 TIGRFAM TIGR02910 sulfite_red_A: sulfite reductase, subunit A 1 341 6.5E-153 T 14-10-2018 IPR014259 Sulphite reductase, subunit A RY45_13370 5c1c1f9f50f9aabef0d309df1bf39495 352 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 230 241 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_00825 98e8417475569aee9185f4f85f9f81dd 257 Pfam PF00005 ABC transporter 24 183 2.3E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_00825 98e8417475569aee9185f4f85f9f81dd 257 SUPERFAMILY SSF52540 7 255 6.25E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00825 98e8417475569aee9185f4f85f9f81dd 257 SMART SM00382 32 233 1.8E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_00825 98e8417475569aee9185f4f85f9f81dd 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 235 255 7.6E-11 T 14-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RY45_00825 98e8417475569aee9185f4f85f9f81dd 257 Gene3D G3DSA:3.40.50.300 3 257 1.9E-60 T 14-10-2018 RY45_00825 98e8417475569aee9185f4f85f9f81dd 257 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 SMART SM00322 60 125 3.5E-7 T 14-10-2018 IPR004087 K Homology domain GO:0003676 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 Gene3D G3DSA:3.30.300.20 17 107 5.2E-30 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.118 T 14-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 14-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 Gene3D G3DSA:3.30.1140.32 108 208 2.3E-45 T 14-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 SUPERFAMILY SSF54814 2 106 1.44E-37 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 7.7E-42 T 14-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 SUPERFAMILY SSF54821 108 206 2.35E-40 T 14-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 3.3E-99 T 14-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RY45_01870 41f246099949a94e47b9e3cbb24d47c4 237 Pfam PF07650 KH domain 39 111 1.9E-18 T 14-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_09535 f5b611838ca1de6491ce0b9a92460559 127 Pfam PF01592 NifU-like N terminal domain 2 125 3.1E-56 T 14-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 RY45_09535 f5b611838ca1de6491ce0b9a92460559 127 Gene3D G3DSA:3.90.1010.10 1 127 9.6E-59 T 14-10-2018 RY45_09535 f5b611838ca1de6491ce0b9a92460559 127 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 2.7E-68 T 14-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 RY45_09535 f5b611838ca1de6491ce0b9a92460559 127 SUPERFAMILY SSF82649 1 125 1.39E-49 T 14-10-2018 RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 SUPERFAMILY SSF54106 465 509 9.94E-10 T 14-10-2018 RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 Pfam PF01464 Transglycosylase SLT domain 121 219 4.8E-26 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 SUPERFAMILY SSF54106 339 382 3.66E-11 T 14-10-2018 RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 SUPERFAMILY SSF53955 106 256 3.66E-42 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 Pfam PF01476 LysM domain 411 453 8.6E-12 T 14-10-2018 IPR018392 LysM domain RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 Pfam PF01476 LysM domain 467 509 1.6E-11 T 14-10-2018 IPR018392 LysM domain RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 Pfam PF01476 LysM domain 340 382 5.0E-12 T 14-10-2018 IPR018392 LysM domain RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 Gene3D G3DSA:1.10.530.10 104 258 1.4E-33 T 14-10-2018 RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 128 156 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 Gene3D G3DSA:3.10.350.10 461 515 2.0E-14 T 14-10-2018 IPR036779 LysM domain superfamily RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 Gene3D G3DSA:3.10.350.10 395 460 7.2E-15 T 14-10-2018 IPR036779 LysM domain superfamily RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 Gene3D G3DSA:3.10.350.10 328 394 1.1E-16 T 14-10-2018 IPR036779 LysM domain superfamily RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 SMART SM00257 339 382 2.0E-13 T 14-10-2018 IPR018392 LysM domain RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 SMART SM00257 410 454 8.6E-13 T 14-10-2018 IPR018392 LysM domain RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 SMART SM00257 466 510 5.5E-12 T 14-10-2018 IPR018392 LysM domain RY45_08500 aa213bd4df1ac4723d5d1a800e8bdee1 515 SUPERFAMILY SSF54106 409 454 1.57E-10 T 14-10-2018 RY45_14075 d8dbe8a77693b53f933e39409e410db3 269 PIRSF PIRSF001430 1 252 8.5E-78 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_14075 d8dbe8a77693b53f933e39409e410db3 269 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 243 35.456 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_14075 d8dbe8a77693b53f933e39409e410db3 269 SUPERFAMILY SSF55120 1 255 6.91E-93 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_14075 d8dbe8a77693b53f933e39409e410db3 269 Gene3D G3DSA:3.30.70.660 105 242 6.2E-48 T 14-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 RY45_14075 d8dbe8a77693b53f933e39409e410db3 269 Gene3D G3DSA:3.30.70.580 1 104 2.5E-41 T 14-10-2018 RY45_14075 d8dbe8a77693b53f933e39409e410db3 269 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 238 2.3E-75 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_14075 d8dbe8a77693b53f933e39409e410db3 269 Pfam PF01416 tRNA pseudouridine synthase 8 102 1.3E-9 T 14-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_14075 d8dbe8a77693b53f933e39409e410db3 269 Pfam PF01416 tRNA pseudouridine synthase 144 244 2.8E-29 T 14-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_08545 3bec2df27d01834c99318985b5893693 290 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 247 285 2.3E-10 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RY45_08545 3bec2df27d01834c99318985b5893693 290 Pfam PF10881 Protein of unknown function (DUF2726) 37 158 9.7E-44 T 14-10-2018 IPR024402 Domain of unknown function DUF2726 RY45_08545 3bec2df27d01834c99318985b5893693 290 SUPERFAMILY SSF57783 241 286 1.51E-7 T 14-10-2018 RY45_08545 3bec2df27d01834c99318985b5893693 290 Gene3D G3DSA:3.30.65.10 233 289 4.1E-6 T 14-10-2018 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 4 448 8.7E-129 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 SUPERFAMILY SSF53633 5 291 9.82E-76 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 PIRSF PIRSF000726 2 450 4.7E-127 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 Pfam PF00696 Amino acid kinase family 5 278 2.9E-48 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 SUPERFAMILY SSF55021 297 395 4.94E-19 T 14-10-2018 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 Gene3D G3DSA:3.40.1160.10 6 290 2.6E-97 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 Gene3D G3DSA:3.30.70.260 304 448 4.2E-50 T 14-10-2018 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 Gene3D G3DSA:3.30.70.260 310 384 4.2E-50 T 14-10-2018 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 Gene3D G3DSA:1.20.120.1320 42 135 2.6E-97 T 14-10-2018 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 6 449 1.4E-119 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_13345 f13b4f66c2fdd93aa829121baaa13c1b 450 SUPERFAMILY SSF55021 377 448 6.3E-14 T 14-10-2018 RY45_04315 a412c7e7a937ec22cb322a1910139edf 253 Gene3D G3DSA:3.40.50.300 1 244 2.1E-81 T 14-10-2018 RY45_04315 a412c7e7a937ec22cb322a1910139edf 253 Pfam PF00005 ABC transporter 20 167 3.9E-38 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_04315 a412c7e7a937ec22cb322a1910139edf 253 PIRSF PIRSF039085 1 243 3.6E-100 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RY45_04315 a412c7e7a937ec22cb322a1910139edf 253 SMART SM00382 29 215 1.9E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_04315 a412c7e7a937ec22cb322a1910139edf 253 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_04315 a412c7e7a937ec22cb322a1910139edf 253 SUPERFAMILY SSF52540 3 230 2.08E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13135 4205daf3596dd18d74c2efce64a93d40 175 Gene3D G3DSA:2.40.50.180 33 147 2.6E-37 T 14-10-2018 RY45_13135 4205daf3596dd18d74c2efce64a93d40 175 SUPERFAMILY SSF50341 7 154 6.02E-35 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_13135 4205daf3596dd18d74c2efce64a93d40 175 Pfam PF01584 CheW-like domain 15 153 2.7E-32 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_13135 4205daf3596dd18d74c2efce64a93d40 175 Gene3D G3DSA:2.30.30.40 16 146 2.6E-37 T 14-10-2018 RY45_13135 4205daf3596dd18d74c2efce64a93d40 175 SMART SM00260 10 152 1.9E-26 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_14505 100e2bad9ce18beb3c0edfc331e95177 222 Gene3D G3DSA:3.30.70.20 99 152 1.9E-57 T 14-10-2018 RY45_14505 100e2bad9ce18beb3c0edfc331e95177 222 Gene3D G3DSA:3.30.70.20 38 213 1.9E-57 T 14-10-2018 RY45_14505 100e2bad9ce18beb3c0edfc331e95177 222 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 126 137 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14505 100e2bad9ce18beb3c0edfc331e95177 222 SUPERFAMILY SSF54862 36 216 2.72E-61 T 14-10-2018 RY45_14505 100e2bad9ce18beb3c0edfc331e95177 222 Pfam PF13247 4Fe-4S dicluster domain 86 182 4.4E-24 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 ProSitePatterns PS01071 grpE protein signature. 143 186 - T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 Gene3D G3DSA:2.30.22.10 132 188 2.0E-25 T 14-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 Pfam PF01025 GrpE 25 188 8.6E-53 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 Hamap MF_01151 Protein GrpE [grpE]. 2 188 21.362 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 SUPERFAMILY SSF58014 34 132 3.92E-28 T 14-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 PRINTS PR00773 GrpE protein signature 167 186 1.5E-28 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 PRINTS PR00773 GrpE protein signature 85 100 1.5E-28 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 PRINTS PR00773 GrpE protein signature 140 155 1.5E-28 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 PRINTS PR00773 GrpE protein signature 57 73 1.5E-28 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 SUPERFAMILY SSF51064 135 189 2.09E-19 T 14-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RY45_15380 f5dd218925c4480547712503ba7e7d9a 191 Gene3D G3DSA:3.90.20.20 25 131 1.3E-32 T 14-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 RY45_05665 3bf683133f4233dc168200fb774944a2 737 SMART SM00260 574 711 1.2E-29 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_05665 3bf683133f4233dc168200fb774944a2 737 Gene3D G3DSA:2.30.30.40 582 707 1.1E-37 T 14-10-2018 RY45_05665 3bf683133f4233dc168200fb774944a2 737 Gene3D G3DSA:1.10.287.560 337 396 2.5E-8 T 14-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 RY45_05665 3bf683133f4233dc168200fb774944a2 737 SUPERFAMILY SSF55874 398 580 8.51E-39 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05665 3bf683133f4233dc168200fb774944a2 737 Gene3D G3DSA:3.30.565.10 397 581 7.8E-58 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05665 3bf683133f4233dc168200fb774944a2 737 SMART SM01231 336 396 1.5E-14 T 14-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RY45_05665 3bf683133f4233dc168200fb774944a2 737 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 560 6.4E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05665 3bf683133f4233dc168200fb774944a2 737 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 536 6.4E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05665 3bf683133f4233dc168200fb774944a2 737 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 579 6.4E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05665 3bf683133f4233dc168200fb774944a2 737 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 500 6.4E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05665 3bf683133f4233dc168200fb774944a2 737 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 444 581 4.6E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05665 3bf683133f4233dc168200fb774944a2 737 Pfam PF01584 CheW-like domain 587 713 2.6E-25 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_05665 3bf683133f4233dc168200fb774944a2 737 Gene3D G3DSA:2.40.50.180 605 666 1.1E-37 T 14-10-2018 RY45_05665 3bf683133f4233dc168200fb774944a2 737 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 338 389 1.8E-8 T 14-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RY45_05665 3bf683133f4233dc168200fb774944a2 737 Gene3D G3DSA:1.20.120.160 2 140 5.6E-37 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_05665 3bf683133f4233dc168200fb774944a2 737 SUPERFAMILY SSF47226 5 118 1.13E-28 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_05665 3bf683133f4233dc168200fb774944a2 737 SUPERFAMILY SSF50341 581 711 7.72E-33 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_05665 3bf683133f4233dc168200fb774944a2 737 SMART SM00073 4 102 3.5E-27 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_05665 3bf683133f4233dc168200fb774944a2 737 SMART SM00387 441 582 1.5E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05665 3bf683133f4233dc168200fb774944a2 737 Pfam PF01627 Hpt domain 8 93 3.5E-18 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_05665 3bf683133f4233dc168200fb774944a2 737 SUPERFAMILY SSF47384 337 397 3.65E-11 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_02980 e8ddb2cb5a6f506df2be45965eb4d075 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 125 192 8.6E-11 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal RY45_02980 e8ddb2cb5a6f506df2be45965eb4d075 209 Gene3D G3DSA:1.20.1050.10 84 198 6.5E-31 T 14-10-2018 RY45_02980 e8ddb2cb5a6f506df2be45965eb4d075 209 SUPERFAMILY SSF52833 1 77 2.2E-19 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_02980 e8ddb2cb5a6f506df2be45965eb4d075 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 73 1.0E-14 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_02980 e8ddb2cb5a6f506df2be45965eb4d075 209 SUPERFAMILY SSF47616 80 199 1.09E-21 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_02980 e8ddb2cb5a6f506df2be45965eb4d075 209 Gene3D G3DSA:3.40.30.10 1 83 2.5E-33 T 14-10-2018 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 11 182 1.9E-69 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 PRINTS PR00338 Transcription termination factor NUSG signature 63 75 6.8E-21 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 PRINTS PR00338 Transcription termination factor NUSG signature 141 156 6.8E-21 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 PRINTS PR00338 Transcription termination factor NUSG signature 159 175 6.8E-21 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 ProSitePatterns PS01014 Transcription termination factor nusG signature. 166 175 - T 14-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 SMART SM00738 8 117 3.2E-49 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 SUPERFAMILY SSF50104 127 182 6.52E-19 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 Gene3D G3DSA:3.30.70.940 3 125 2.1E-47 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 Pfam PF00467 KOW motif 132 162 4.5E-8 T 14-10-2018 IPR005824 KOW RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 Gene3D G3DSA:2.30.30.30 126 182 3.6E-26 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 SUPERFAMILY SSF82679 9 119 2.09E-40 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 Pfam PF02357 Transcription termination factor nusG 9 114 2.8E-26 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 SMART SM00739 129 156 2.8E-6 T 14-10-2018 IPR005824 KOW RY45_21070 418e79c3b41aea463cf2e2f884b7b357 183 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 8 183 25.202 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Gene3D G3DSA:2.20.25.10 811 868 7.9E-28 T 14-10-2018 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 SUPERFAMILY SSF57783 812 865 5.44E-22 T 14-10-2018 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Gene3D G3DSA:3.40.50.140 1 166 1.4E-64 T 14-10-2018 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 735 54.661 T 14-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 712 748 2.1E-9 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 600 625 1.6E-5 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 SMART SM00493 3 135 2.1E-29 T 14-10-2018 IPR006171 TOPRIM domain RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Pfam PF01131 DNA topoisomerase 160 568 7.3E-122 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Pfam PF01751 Toprim domain 5 145 2.3E-32 T 14-10-2018 IPR006171 TOPRIM domain RY45_16010 af0174224394f80308ae148ba3f9db4e 873 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 312 326 - T 14-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Gene3D G3DSA:3.30.65.10 748 810 2.2E-30 T 14-10-2018 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Gene3D G3DSA:3.30.65.10 700 747 4.7E-5 T 14-10-2018 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Gene3D G3DSA:1.10.290.10 283 407 4.3E-156 T 14-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Gene3D G3DSA:1.10.460.10 168 574 4.3E-156 T 14-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Pfam PF08272 Topoisomerase I zinc-ribbon-like 827 865 1.0E-22 T 14-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Pfam PF08272 Topoisomerase I zinc-ribbon-like 761 796 1.6E-12 T 14-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 SUPERFAMILY SSF57783 702 746 1.02E-6 T 14-10-2018 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 SUPERFAMILY SSF56712 3 612 1.83E-196 T 14-10-2018 IPR023405 DNA topoisomerase, type IA, core domain RY45_16010 af0174224394f80308ae148ba3f9db4e 873 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 638 4.1E-244 T 14-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 7.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 493 507 7.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 393 409 7.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 317 326 7.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 109 122 7.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 SMART SM00436 136 224 8.6E-48 T 14-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 SMART SM00437 275 530 3.5E-115 T 14-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 Gene3D G3DSA:2.70.20.10 216 476 4.3E-156 T 14-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RY45_16010 af0174224394f80308ae148ba3f9db4e 873 SUPERFAMILY SSF57783 747 810 1.65E-19 T 14-10-2018 RY45_13140 0b33aa809823327f63d7669262ea2767 287 Gene3D G3DSA:3.40.50.150 83 276 1.8E-61 T 14-10-2018 RY45_13140 0b33aa809823327f63d7669262ea2767 287 SUPERFAMILY SSF53335 84 273 2.98E-52 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_13140 0b33aa809823327f63d7669262ea2767 287 PIRSF PIRSF000410 2 279 6.0E-87 T 14-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR RY45_13140 0b33aa809823327f63d7669262ea2767 287 SUPERFAMILY SSF47757 9 83 1.83E-16 T 14-10-2018 RY45_13140 0b33aa809823327f63d7669262ea2767 287 SMART SM00138 16 277 5.1E-86 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_13140 0b33aa809823327f63d7669262ea2767 287 PRINTS PR00996 Glutamate methyltransferase family signature 238 261 4.2E-41 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_13140 0b33aa809823327f63d7669262ea2767 287 PRINTS PR00996 Glutamate methyltransferase family signature 77 89 4.2E-41 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_13140 0b33aa809823327f63d7669262ea2767 287 PRINTS PR00996 Glutamate methyltransferase family signature 114 134 4.2E-41 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_13140 0b33aa809823327f63d7669262ea2767 287 PRINTS PR00996 Glutamate methyltransferase family signature 38 51 4.2E-41 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_13140 0b33aa809823327f63d7669262ea2767 287 PRINTS PR00996 Glutamate methyltransferase family signature 147 163 4.2E-41 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_13140 0b33aa809823327f63d7669262ea2767 287 PRINTS PR00996 Glutamate methyltransferase family signature 219 233 4.2E-41 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_13140 0b33aa809823327f63d7669262ea2767 287 Gene3D G3DSA:1.10.155.10 7 82 5.9E-18 T 14-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily RY45_13140 0b33aa809823327f63d7669262ea2767 287 Pfam PF01739 CheR methyltransferase, SAM binding domain 84 264 1.3E-53 T 14-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RY45_13140 0b33aa809823327f63d7669262ea2767 287 Pfam PF03705 CheR methyltransferase, all-alpha domain 18 66 7.7E-16 T 14-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RY45_02930 0b6c23d828374cc38eb139d1b53fd35d 210 Gene3D G3DSA:2.160.10.10 1 209 1.7E-77 T 14-10-2018 RY45_02930 0b6c23d828374cc38eb139d1b53fd35d 210 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 119 147 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_02930 0b6c23d828374cc38eb139d1b53fd35d 210 SUPERFAMILY SSF51161 18 206 8.46E-48 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_02930 0b6c23d828374cc38eb139d1b53fd35d 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 1.1E-10 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_16050 b0cf8bf40074334408945aa0a3d70bcf 302 SUPERFAMILY SSF46785 1 108 9.09E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_16050 b0cf8bf40074334408945aa0a3d70bcf 302 Pfam PF03466 LysR substrate binding domain 86 290 4.3E-27 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_16050 b0cf8bf40074334408945aa0a3d70bcf 302 SUPERFAMILY SSF53850 89 294 1.16E-28 T 14-10-2018 RY45_16050 b0cf8bf40074334408945aa0a3d70bcf 302 Gene3D G3DSA:3.40.190.10 160 263 2.0E-24 T 14-10-2018 RY45_16050 b0cf8bf40074334408945aa0a3d70bcf 302 Gene3D G3DSA:3.40.190.10 91 284 2.0E-24 T 14-10-2018 RY45_16050 b0cf8bf40074334408945aa0a3d70bcf 302 Gene3D G3DSA:1.10.10.10 1 90 2.3E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16050 b0cf8bf40074334408945aa0a3d70bcf 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 9.3E-15 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_18875 87f9bbb6a93d95f77886c2749ef6380d 238 Gene3D G3DSA:3.40.50.1580 1 236 9.7E-78 T 14-10-2018 RY45_18875 87f9bbb6a93d95f77886c2749ef6380d 238 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 52.639 T 14-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RY45_18875 87f9bbb6a93d95f77886c2749ef6380d 238 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 2.4E-123 T 14-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RY45_18875 87f9bbb6a93d95f77886c2749ef6380d 238 SUPERFAMILY SSF53167 3 234 6.15E-95 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RY45_18875 87f9bbb6a93d95f77886c2749ef6380d 238 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 14-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18875 87f9bbb6a93d95f77886c2749ef6380d 238 Pfam PF01048 Phosphorylase superfamily 16 217 3.1E-39 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RY45_05440 8689da75d39e4becd692d70014fdae1d 114 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 1 114 30.299 T 14-10-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE RY45_05440 8689da75d39e4becd692d70014fdae1d 114 Gene3D G3DSA:1.10.3730.20 31 112 1.2E-8 T 14-10-2018 RY45_05440 8689da75d39e4becd692d70014fdae1d 114 SUPERFAMILY SSF103481 27 110 3.4E-13 T 14-10-2018 RY45_05440 8689da75d39e4becd692d70014fdae1d 114 Pfam PF00892 EamA-like transporter family 27 110 8.8E-10 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12440 8e148abecf4cb92a62187321aa40fcc7 372 Gene3D G3DSA:1.10.150.130 81 191 2.4E-7 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal RY45_12440 8e148abecf4cb92a62187321aa40fcc7 372 SUPERFAMILY SSF56349 87 367 3.53E-47 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_12440 8e148abecf4cb92a62187321aa40fcc7 372 Gene3D G3DSA:1.10.443.10 193 371 1.0E-21 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_12440 8e148abecf4cb92a62187321aa40fcc7 372 Pfam PF00589 Phage integrase family 196 351 2.0E-14 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_08800 ef5766e634d094cb6a700f4366ee6c76 551 Pfam PF00672 HAMP domain 215 270 2.7E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_08800 ef5766e634d094cb6a700f4366ee6c76 551 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 174 2.8E-15 T 14-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RY45_08800 ef5766e634d094cb6a700f4366ee6c76 551 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 335 515 8.9E-43 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08800 ef5766e634d094cb6a700f4366ee6c76 551 SUPERFAMILY SSF58104 250 551 1.31E-77 T 14-10-2018 RY45_08800 ef5766e634d094cb6a700f4366ee6c76 551 SMART SM00304 215 274 3.8E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_08800 ef5766e634d094cb6a700f4366ee6c76 551 Gene3D G3DSA:1.10.287.950 214 551 1.2E-77 T 14-10-2018 RY45_08800 ef5766e634d094cb6a700f4366ee6c76 551 SMART SM00283 289 550 1.2E-81 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_14460 cf04eae2ee101cb543b8448ef5f2e954 248 Gene3D G3DSA:3.40.190.10 30 244 2.6E-28 T 14-10-2018 RY45_14460 cf04eae2ee101cb543b8448ef5f2e954 248 Gene3D G3DSA:3.40.190.10 109 205 2.6E-28 T 14-10-2018 RY45_14460 cf04eae2ee101cb543b8448ef5f2e954 248 SUPERFAMILY SSF53850 25 246 3.59E-35 T 14-10-2018 RY45_14460 cf04eae2ee101cb543b8448ef5f2e954 248 SMART SM00062 24 248 8.8E-4 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_14460 cf04eae2ee101cb543b8448ef5f2e954 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 246 3.2E-23 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_06420 1db13efa5a65ba8dc46a3c5059b4f220 300 Gene3D G3DSA:3.40.190.10 92 290 1.5E-64 T 14-10-2018 RY45_06420 1db13efa5a65ba8dc46a3c5059b4f220 300 Gene3D G3DSA:1.10.10.10 3 89 2.3E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06420 1db13efa5a65ba8dc46a3c5059b4f220 300 Pfam PF03466 LysR substrate binding domain 88 292 9.1E-46 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_06420 1db13efa5a65ba8dc46a3c5059b4f220 300 Gene3D G3DSA:3.40.190.10 163 263 1.5E-64 T 14-10-2018 RY45_06420 1db13efa5a65ba8dc46a3c5059b4f220 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.7E-12 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06420 1db13efa5a65ba8dc46a3c5059b4f220 300 SUPERFAMILY SSF46785 4 111 9.8E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_06420 1db13efa5a65ba8dc46a3c5059b4f220 300 SUPERFAMILY SSF53850 89 295 1.41E-45 T 14-10-2018 RY45_12785 217567906bc67b9d816379c098832356 308 PIRSF PIRSF000089 1 308 6.6E-105 T 14-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 RY45_12785 217567906bc67b9d816379c098832356 308 SUPERFAMILY SSF52402 2 180 2.3E-48 T 14-10-2018 RY45_12785 217567906bc67b9d816379c098832356 308 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 271 8.0E-35 T 14-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 RY45_12785 217567906bc67b9d816379c098832356 308 Pfam PF01012 Electron transfer flavoprotein domain 3 170 1.7E-39 T 14-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RY45_12785 217567906bc67b9d816379c098832356 308 Gene3D G3DSA:3.40.50.1220 183 308 2.5E-55 T 14-10-2018 RY45_12785 217567906bc67b9d816379c098832356 308 Gene3D G3DSA:3.40.50.620 2 182 5.5E-55 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_12785 217567906bc67b9d816379c098832356 308 SMART SM00893 3 181 1.0E-38 T 14-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RY45_12785 217567906bc67b9d816379c098832356 308 SUPERFAMILY SSF52467 188 308 6.18E-46 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RY45_12785 217567906bc67b9d816379c098832356 308 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 252 278 - T 14-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 Pfam PF00155 Aminotransferase class I and II 27 392 2.5E-80 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 SUPERFAMILY SSF53383 1 396 1.29E-112 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 Gene3D G3DSA:3.90.1150.10 5 392 8.7E-155 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 3.5E-38 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 3.5E-38 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 3.5E-38 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 3.5E-38 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RY45_08780 2d57ab72c223af36f3a568076111ffa4 396 Gene3D G3DSA:3.40.640.10 60 300 8.7E-155 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_20050 19e178c0c6f6acf2caccb64c0a498483 204 Pfam PF01121 Dephospho-CoA kinase 2 179 2.3E-70 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RY45_20050 19e178c0c6f6acf2caccb64c0a498483 204 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 177 7.2E-62 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RY45_20050 19e178c0c6f6acf2caccb64c0a498483 204 SUPERFAMILY SSF52540 1 191 4.84E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20050 19e178c0c6f6acf2caccb64c0a498483 204 Gene3D G3DSA:3.40.50.300 1 203 1.6E-69 T 14-10-2018 RY45_20050 19e178c0c6f6acf2caccb64c0a498483 204 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 192 27.727 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RY45_08580 a8eca466592c01440dd2560f341547e7 208 SUPERFAMILY SSF53271 3 206 3.15E-66 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like RY45_08580 a8eca466592c01440dd2560f341547e7 208 Gene3D G3DSA:3.40.50.2020 1 208 9.4E-72 T 14-10-2018 RY45_08580 a8eca466592c01440dd2560f341547e7 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 1.0E-62 T 14-10-2018 RY45_08580 a8eca466592c01440dd2560f341547e7 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 43.722 T 14-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RY45_08580 a8eca466592c01440dd2560f341547e7 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 2 208 4.1E-89 T 14-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RY45_11625 880af8cb528df25d385a835d67d7e6c4 55 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 1.4E-19 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11625 880af8cb528df25d385a835d67d7e6c4 55 SUPERFAMILY SSF57829 2 54 5.62E-18 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RY45_11625 880af8cb528df25d385a835d67d7e6c4 55 Pfam PF01783 Ribosomal L32p protein family 2 54 6.8E-19 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11625 880af8cb528df25d385a835d67d7e6c4 55 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.594 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_05530 bc684ff9ff1de38378ef2c421615a1a0 289 Pfam PF13424 Tetratricopeptide repeat 157 221 5.8E-8 T 14-10-2018 RY45_05530 bc684ff9ff1de38378ef2c421615a1a0 289 Gene3D G3DSA:1.25.40.10 68 289 2.8E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_05530 bc684ff9ff1de38378ef2c421615a1a0 289 SUPERFAMILY SSF48452 80 223 1.84E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_15385 636cda4d5d7689f7a45c4d0e1aeaf11f 294 Pfam PF01513 ATP-NAD kinase 8 273 6.4E-67 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RY45_15385 636cda4d5d7689f7a45c4d0e1aeaf11f 294 Hamap MF_00361 NAD kinase [nadK]. 6 289 33.67 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RY45_15385 636cda4d5d7689f7a45c4d0e1aeaf11f 294 SUPERFAMILY SSF111331 7 291 6.54E-91 T 14-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RY45_15385 636cda4d5d7689f7a45c4d0e1aeaf11f 294 Gene3D G3DSA:3.40.50.10330 26 289 2.0E-92 T 14-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RY45_15385 636cda4d5d7689f7a45c4d0e1aeaf11f 294 Gene3D G3DSA:2.60.200.30 128 266 2.0E-92 T 14-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RY45_05025 b680c1a390ea417b0772b063682a7ec3 451 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 24 448 1.1E-90 T 14-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 RY45_05025 b680c1a390ea417b0772b063682a7ec3 451 Gene3D G3DSA:1.10.3550.10 105 441 3.5E-72 T 14-10-2018 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal RY45_05025 b680c1a390ea417b0772b063682a7ec3 451 Gene3D G3DSA:1.10.3410.10 228 338 3.5E-72 T 14-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 RY45_05025 b680c1a390ea417b0772b063682a7ec3 451 Pfam PF01966 HD domain 57 115 7.4E-9 T 14-10-2018 IPR006674 HD domain RY45_05025 b680c1a390ea417b0772b063682a7ec3 451 Gene3D G3DSA:1.10.3210.10 24 227 3.5E-72 T 14-10-2018 RY45_05025 b680c1a390ea417b0772b063682a7ec3 451 SMART SM00471 53 244 1.1E-8 T 14-10-2018 IPR003607 HD/PDEase domain RY45_05025 b680c1a390ea417b0772b063682a7ec3 451 Pfam PF13286 Phosphohydrolase-associated domain 415 446 1.1E-4 T 14-10-2018 IPR026875 Phosphohydrolase-associated domain RY45_05025 b680c1a390ea417b0772b063682a7ec3 451 SUPERFAMILY SSF109604 23 446 5.07E-51 T 14-10-2018 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 SUPERFAMILY SSF53067 293 556 7.45E-47 T 14-10-2018 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 PIRSF PIRSF000538 232 560 1.1E-33 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 PIRSF PIRSF000538 8 207 5.0E-7 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 Gene3D G3DSA:3.30.420.40 12 533 4.2E-118 T 14-10-2018 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 298 508 4.4E-40 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 Hamap MF_00520 Ribulokinase [araB]. 8 561 50.473 T 14-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 10 554 1.4E-218 T 14-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 Gene3D G3DSA:3.30.420.460 343 544 4.2E-118 T 14-10-2018 RY45_10210 99b6f207ad3f3dc14db0183342f035d5 563 SUPERFAMILY SSF53067 11 291 1.62E-20 T 14-10-2018 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1057 0.0 T 14-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1401 18.894 T 14-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Gene3D G3DSA:1.10.40.90 374 416 6.2E-22 T 14-10-2018 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Gene3D G3DSA:2.40.50.100 1050 1153 1.9E-28 T 14-10-2018 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 SMART SM00663 235 514 7.9E-183 T 14-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 1.6E-88 T 14-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Gene3D G3DSA:1.10.132.30 667 816 1.7E-65 T 14-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Gene3D G3DSA:1.10.150.390 1343 1403 7.5E-28 T 14-10-2018 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Gene3D G3DSA:1.10.274.100 490 666 9.5E-37 T 14-10-2018 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 670 7.6E-28 T 14-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 SUPERFAMILY SSF64484 16 1391 0.0 T 14-10-2018 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Gene3D G3DSA:2.40.50.100 975 1049 2.6E-27 T 14-10-2018 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Pfam PF04998 RNA polymerase Rpb1, domain 5 792 1343 1.7E-77 T 14-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 392 1.1E-7 T 14-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 2.7E-27 T 14-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Pfam PF05000 RNA polymerase Rpb1, domain 4 700 778 1.3E-18 T 14-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Gene3D G3DSA:1.10.1790.20 1162 1341 1.7E-62 T 14-10-2018 RY45_21040 a40a801aed36056070d4a696ae807bd6 1434 Gene3D G3DSA:2.40.50.100 1178 1242 1.7E-62 T 14-10-2018 RY45_09555 f30cabbca065fe31d8fae3ada01751ff 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 14-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RY45_09555 f30cabbca065fe31d8fae3ada01751ff 112 Gene3D G3DSA:3.10.20.30 1 112 8.3E-35 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_09555 f30cabbca065fe31d8fae3ada01751ff 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 1.0E-56 T 14-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 RY45_09555 f30cabbca065fe31d8fae3ada01751ff 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 91 2.4E-14 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RY45_09555 f30cabbca065fe31d8fae3ada01751ff 112 SUPERFAMILY SSF54292 5 104 1.91E-32 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_09555 f30cabbca065fe31d8fae3ada01751ff 112 PRINTS PR00355 Adrenodoxin signature 42 52 6.7E-10 T 14-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RY45_09555 f30cabbca065fe31d8fae3ada01751ff 112 PRINTS PR00355 Adrenodoxin signature 60 74 6.7E-10 T 14-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RY45_09555 f30cabbca065fe31d8fae3ada01751ff 112 PRINTS PR00355 Adrenodoxin signature 83 91 6.7E-10 T 14-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RY45_06705 7e6048f9aa63bed1c64316c06d12c9f8 300 Pfam PF00480 ROK family 2 298 7.7E-64 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RY45_06705 7e6048f9aa63bed1c64316c06d12c9f8 300 Gene3D G3DSA:3.30.420.40 119 289 2.5E-84 T 14-10-2018 RY45_06705 7e6048f9aa63bed1c64316c06d12c9f8 300 Gene3D G3DSA:3.30.420.40 4 296 2.5E-84 T 14-10-2018 RY45_06705 7e6048f9aa63bed1c64316c06d12c9f8 300 ProSitePatterns PS01125 ROK family signature. 130 157 - T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RY45_06705 7e6048f9aa63bed1c64316c06d12c9f8 300 SUPERFAMILY SSF53067 1 298 4.41E-53 T 14-10-2018 RY45_15530 3b4214ce7db9ecee80ce3e53b89d8e75 387 Gene3D G3DSA:1.20.1250.20 201 378 7.6E-14 T 14-10-2018 RY45_15530 3b4214ce7db9ecee80ce3e53b89d8e75 387 Gene3D G3DSA:1.20.1250.20 2 186 2.0E-15 T 14-10-2018 RY45_15530 3b4214ce7db9ecee80ce3e53b89d8e75 387 SUPERFAMILY SSF103473 6 382 1.57E-32 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_15530 3b4214ce7db9ecee80ce3e53b89d8e75 387 Pfam PF07690 Major Facilitator Superfamily 12 180 1.2E-10 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_09235 fc80cb8f9720f86087bd430650b8ad1e 272 Pfam PF04055 Radical SAM superfamily 49 203 2.2E-25 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_09235 fc80cb8f9720f86087bd430650b8ad1e 272 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 31 265 4.1E-104 T 14-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 RY45_09235 fc80cb8f9720f86087bd430650b8ad1e 272 Pfam PF13353 4Fe-4S single cluster domain 41 166 4.0E-21 T 14-10-2018 RY45_09235 fc80cb8f9720f86087bd430650b8ad1e 272 SUPERFAMILY SSF102114 48 241 4.9E-23 T 14-10-2018 RY45_09235 fc80cb8f9720f86087bd430650b8ad1e 272 Gene3D G3DSA:3.20.20.70 27 272 1.4E-98 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_09235 fc80cb8f9720f86087bd430650b8ad1e 272 PIRSF PIRSF000371 69 271 1.7E-42 T 14-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 RY45_09235 fc80cb8f9720f86087bd430650b8ad1e 272 PIRSF PIRSF000371 21 72 3.2E-11 T 14-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 RY45_09235 fc80cb8f9720f86087bd430650b8ad1e 272 ProSitePatterns PS01087 Radical activating enzymes signature. 43 64 - T 14-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 118 3.0E-32 T 14-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 SUPERFAMILY SSF47203 228 379 5.32E-51 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 PIRSF PIRSF016578 2 94 0.22 T 14-10-2018 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 PIRSF PIRSF016578 130 382 1.1E-11 T 14-10-2018 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 Gene3D G3DSA:2.40.110.10 121 233 4.1E-46 T 14-10-2018 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 6.1E-27 T 14-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 Gene3D G3DSA:1.20.140.10 234 379 3.6E-51 T 14-10-2018 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 377 3.5E-45 T 14-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 Gene3D G3DSA:1.10.540.10 1 120 8.6E-40 T 14-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RY45_12485 2d6197c7f85f83f84f54e3a5f69e6ad8 382 SUPERFAMILY SSF56645 4 242 1.24E-84 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RY45_10675 ae5a2d05d1205728ebd91427f866fefc 423 SUPERFAMILY SSF53300 252 419 3.64E-5 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_10675 ae5a2d05d1205728ebd91427f866fefc 423 Pfam PF04285 Protein of unknown function (DUF444) 3 421 6.3E-189 T 14-10-2018 IPR006698 Uncharacterised protein family UPF0229 RY45_10675 ae5a2d05d1205728ebd91427f866fefc 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 40.112 T 14-10-2018 IPR006698 Uncharacterised protein family UPF0229 RY45_10620 ec58f0ce4bab770c52c9ef5297262856 321 Gene3D G3DSA:3.40.190.150 27 310 5.3E-58 T 14-10-2018 RY45_10620 ec58f0ce4bab770c52c9ef5297262856 321 PIRSF PIRSF017082 2 321 1.1E-80 T 14-10-2018 IPR005064 Bordetella uptake gene GO:0030288 RY45_10620 ec58f0ce4bab770c52c9ef5297262856 321 Gene3D G3DSA:3.40.190.10 121 247 5.3E-58 T 14-10-2018 RY45_10620 ec58f0ce4bab770c52c9ef5297262856 321 SUPERFAMILY SSF53850 96 279 1.09E-8 T 14-10-2018 RY45_10620 ec58f0ce4bab770c52c9ef5297262856 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 67 318 7.9E-22 T 14-10-2018 IPR005064 Bordetella uptake gene GO:0030288 RY45_20140 ed4e81582166ee4124c635b86a567b4b 584 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 18 566 43.647 T 14-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_20140 ed4e81582166ee4124c635b86a567b4b 584 SUPERFAMILY SSF56519 62 233 3.92E-42 T 14-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RY45_20140 ed4e81582166ee4124c635b86a567b4b 584 Gene3D G3DSA:3.90.1310.30 58 234 2.1E-42 T 14-10-2018 RY45_20140 ed4e81582166ee4124c635b86a567b4b 584 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 219 6.6E-15 T 14-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RY45_20140 ed4e81582166ee4124c635b86a567b4b 584 Gene3D G3DSA:3.40.710.10 295 475 7.6E-102 T 14-10-2018 RY45_20140 ed4e81582166ee4124c635b86a567b4b 584 Pfam PF00905 Penicillin binding protein transpeptidase domain 259 550 4.1E-79 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RY45_20140 ed4e81582166ee4124c635b86a567b4b 584 Gene3D G3DSA:3.30.450.330 236 551 7.6E-102 T 14-10-2018 RY45_20140 ed4e81582166ee4124c635b86a567b4b 584 SUPERFAMILY SSF56601 234 563 3.65E-90 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_13665 1535547da64400d44fab702ee0f67ff5 187 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13665 1535547da64400d44fab702ee0f67ff5 187 PIRSF PIRSF005784 3 187 6.6E-86 T 14-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 RY45_13665 1535547da64400d44fab702ee0f67ff5 187 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 167 25.115 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 RY45_13665 1535547da64400d44fab702ee0f67ff5 187 Pfam PF04060 Putative Fe-S cluster 44 75 6.0E-14 T 14-10-2018 IPR007202 4Fe-4S domain GO:0051536 RY45_13665 1535547da64400d44fab702ee0f67ff5 187 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 179 5.1E-86 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 RY45_13665 1535547da64400d44fab702ee0f67ff5 187 Gene3D G3DSA:1.10.15.40 39 84 3.7E-7 T 14-10-2018 RY45_13665 1535547da64400d44fab702ee0f67ff5 187 SUPERFAMILY SSF54862 37 174 3.14E-30 T 14-10-2018 RY45_13665 1535547da64400d44fab702ee0f67ff5 187 Pfam PF14697 4Fe-4S dicluster domain 108 162 3.0E-18 T 14-10-2018 RY45_13665 1535547da64400d44fab702ee0f67ff5 187 Gene3D G3DSA:3.30.70.20 85 180 5.5E-21 T 14-10-2018 RY45_16155 cdcaa2b047fbcec02c15879770338011 323 Gene3D G3DSA:3.40.190.10 179 280 2.5E-29 T 14-10-2018 RY45_16155 cdcaa2b047fbcec02c15879770338011 323 Gene3D G3DSA:1.10.10.10 1 88 8.0E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16155 cdcaa2b047fbcec02c15879770338011 323 Gene3D G3DSA:3.40.190.10 97 307 2.5E-29 T 14-10-2018 RY45_16155 cdcaa2b047fbcec02c15879770338011 323 Pfam PF03466 LysR substrate binding domain 97 312 2.0E-12 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_16155 cdcaa2b047fbcec02c15879770338011 323 SUPERFAMILY SSF53850 97 312 7.6E-25 T 14-10-2018 RY45_16155 cdcaa2b047fbcec02c15879770338011 323 SUPERFAMILY SSF46785 6 84 3.74E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_16155 cdcaa2b047fbcec02c15879770338011 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 6.6E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01770 eedc6db91a872c43992593497b4bce29 156 SUPERFAMILY SSF54611 4 144 1.07E-55 T 14-10-2018 IPR035958 SecB-like superfamily RY45_01770 eedc6db91a872c43992593497b4bce29 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 148 34.148 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RY45_01770 eedc6db91a872c43992593497b4bce29 156 Pfam PF02556 Preprotein translocase subunit SecB 8 146 1.5E-58 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RY45_01770 eedc6db91a872c43992593497b4bce29 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 9 143 1.5E-61 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RY45_01770 eedc6db91a872c43992593497b4bce29 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 16 33 4.0E-41 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RY45_01770 eedc6db91a872c43992593497b4bce29 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 100 122 4.0E-41 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RY45_01770 eedc6db91a872c43992593497b4bce29 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 76 96 4.0E-41 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RY45_01770 eedc6db91a872c43992593497b4bce29 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 126 144 4.0E-41 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RY45_01770 eedc6db91a872c43992593497b4bce29 156 Gene3D G3DSA:3.10.420.10 1 156 7.5E-61 T 14-10-2018 IPR035958 SecB-like superfamily RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SMART SM00388 282 347 5.1E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SUPERFAMILY SSF52172 524 641 2.28E-27 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Pfam PF08448 PAS fold 164 271 1.1E-15 T 14-10-2018 IPR013656 PAS fold-4 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SUPERFAMILY SSF55785 140 267 8.72E-21 T 14-10-2018 IPR035965 PAS domain superfamily RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Gene3D G3DSA:1.20.120.160 650 770 3.1E-26 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SUPERFAMILY SSF47226 658 768 2.36E-25 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SMART SM00448 524 636 2.7E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Pfam PF00072 Response regulator receiver domain 526 635 2.8E-18 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Gene3D G3DSA:3.30.565.10 348 510 3.2E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Gene3D G3DSA:3.40.50.2300 511 639 3.5E-29 T 14-10-2018 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 506 1.3E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SUPERFAMILY SSF55874 336 505 8.51E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 450 1.3E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 464 1.3E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 487 1.3E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 506 1.3E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 4.8E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SUPERFAMILY SSF47384 269 347 2.35E-17 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 276 2.5E-16 T 14-10-2018 IPR000014 PAS domain RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Gene3D G3DSA:3.30.450.20 152 267 9.3E-20 T 14-10-2018 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SMART SM00073 671 768 1.9E-6 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SMART SM00091 155 221 4.3E-5 T 14-10-2018 IPR000014 PAS domain RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Pfam PF01627 Hpt domain 682 753 3.4E-11 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 SMART SM00387 394 509 1.9E-32 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Gene3D G3DSA:1.10.287.970 1 89 1.7E-35 T 14-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 Gene3D G3DSA:1.10.287.130 268 345 1.4E-21 T 14-10-2018 RY45_05020 7a07634820f6fddcff4957220c8bd31d 770 PIRSF PIRSF003182 1 770 0.0 T 14-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 RY45_08945 9de47db1db2871d076125549d2b973f4 400 Pfam PF07690 Major Facilitator Superfamily 24 366 2.0E-29 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_08945 9de47db1db2871d076125549d2b973f4 400 Gene3D G3DSA:1.20.1720.10 19 398 1.3E-64 T 14-10-2018 RY45_08945 9de47db1db2871d076125549d2b973f4 400 SUPERFAMILY SSF103473 7 394 1.02E-44 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Pfam PF00476 DNA polymerase family A 540 914 2.7E-155 T 14-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 SUPERFAMILY SSF53098 321 505 3.37E-59 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 SUPERFAMILY SSF56672 510 917 7.89E-156 T 14-10-2018 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 643 665 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 688 711 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 666 681 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 742 767 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 864 877 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 833 849 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 779 790 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 801 812 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 718 731 6.4E-81 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 272 5.6E-28 T 14-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Gene3D G3DSA:1.10.150.20 697 840 6.6E-112 T 14-10-2018 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Gene3D G3DSA:1.20.1060.10 532 646 1.8E-40 T 14-10-2018 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 SUPERFAMILY SSF47807 171 292 1.41E-28 T 14-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Gene3D G3DSA:3.40.50.1010 7 283 2.2E-90 T 14-10-2018 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 SMART SM00475 5 268 8.5E-116 T 14-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 SMART SM00474 318 505 1.3E-40 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 SMART SM00482 674 881 2.3E-118 T 14-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Gene3D G3DSA:3.30.70.370 652 913 6.6E-112 T 14-10-2018 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Gene3D G3DSA:1.10.150.20 174 253 2.2E-90 T 14-10-2018 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 7 170 1.5E-52 T 14-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 ProSitePatterns PS00447 DNA polymerase family A signature. 742 761 - T 14-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Pfam PF01612 3'-5' exonuclease 318 504 2.5E-40 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 TIGRFAM TIGR00593 pola: DNA polymerase I 7 917 3.9E-284 T 14-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 SUPERFAMILY SSF88723 5 170 3.19E-54 T 14-10-2018 IPR029060 PIN-like domain superfamily RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 Gene3D G3DSA:3.30.420.10 315 530 5.0E-73 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_01260 2e03d8bfbf73e770bd57a0e17190c4aa 917 SMART SM00279 173 208 1.9E-11 T 14-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RY45_09095 4c4c91078a9fc563eddbc5fd80e5da08 804 SUPERFAMILY SSF55486 243 515 2.56E-33 T 14-10-2018 RY45_09095 4c4c91078a9fc563eddbc5fd80e5da08 804 Gene3D G3DSA:2.60.120.260 637 762 1.4E-9 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily RY45_09095 4c4c91078a9fc563eddbc5fd80e5da08 804 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 530 588 2.8E-5 T 14-10-2018 IPR018905 Alpha-galactosidase, NEW3 domain RY45_09095 4c4c91078a9fc563eddbc5fd80e5da08 804 SUPERFAMILY SSF49785 647 754 9.35E-16 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily RY45_09095 4c4c91078a9fc563eddbc5fd80e5da08 804 Pfam PF01483 Proprotein convertase P-domain 667 753 5.7E-11 T 14-10-2018 IPR002884 P domain GO:0004252|GO:0006508 RY45_08075 b13fc697ed191573aee824453f4236e8 458 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 54 447 1.3E-107 T 14-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 RY45_08075 b13fc697ed191573aee824453f4236e8 458 Pfam PF03606 C4-dicarboxylate anaerobic carrier 1 451 1.1E-84 T 14-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 SUPERFAMILY SSF51735 1 235 1.79E-48 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 131 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 Pfam PF00106 short chain dehydrogenase 6 181 1.6E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 128 156 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_05885 2f43e07620b2ba2239633cff9ac4ff18 245 Gene3D G3DSA:3.40.50.720 1 228 5.1E-46 T 14-10-2018 RY45_14465 57f73d06b417e7a4e3b52fbd0f99dadc 337 Gene3D G3DSA:3.30.70.270 163 336 2.5E-46 T 14-10-2018 RY45_14465 57f73d06b417e7a4e3b52fbd0f99dadc 337 SUPERFAMILY SSF55073 178 334 3.14E-37 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_14465 57f73d06b417e7a4e3b52fbd0f99dadc 337 SUPERFAMILY SSF55781 17 166 2.62E-16 T 14-10-2018 RY45_14465 57f73d06b417e7a4e3b52fbd0f99dadc 337 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 169 334 5.8E-38 T 14-10-2018 IPR000160 GGDEF domain RY45_14465 57f73d06b417e7a4e3b52fbd0f99dadc 337 Pfam PF13492 GAF domain 24 155 3.8E-8 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_14465 57f73d06b417e7a4e3b52fbd0f99dadc 337 Pfam PF00990 Diguanylate cyclase, GGDEF domain 174 334 3.9E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_14465 57f73d06b417e7a4e3b52fbd0f99dadc 337 Gene3D G3DSA:3.30.450.40 3 162 1.1E-14 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_14465 57f73d06b417e7a4e3b52fbd0f99dadc 337 SMART SM00267 162 337 6.4E-42 T 14-10-2018 IPR000160 GGDEF domain RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 Pfam PF04542 Sigma-70 region 2 26 93 2.9E-19 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 Gene3D G3DSA:1.10.10.10 124 193 5.9E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 Gene3D G3DSA:1.10.1740.10 1 122 4.3E-44 T 14-10-2018 RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 Pfam PF08281 Sigma-70, region 4 135 182 2.0E-19 T 14-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 3 191 1.7E-101 T 14-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 SUPERFAMILY SSF88659 125 187 8.78E-19 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 187 9.3E-35 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 SUPERFAMILY SSF88946 8 107 9.42E-32 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RY45_04470 e599ea290043f1f26bd6fcd24f6bdc33 193 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 48 79 - T 14-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_18315 aea9d4f1031aef6f400b3414ed9f5fac 197 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 6 189 5.2E-82 T 14-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RY45_18315 aea9d4f1031aef6f400b3414ed9f5fac 197 Gene3D G3DSA:3.40.50.300 1 197 4.0E-81 T 14-10-2018 RY45_18315 aea9d4f1031aef6f400b3414ed9f5fac 197 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 22 194 38.781 T 14-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RY45_18315 aea9d4f1031aef6f400b3414ed9f5fac 197 SUPERFAMILY SSF52540 18 191 1.86E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18315 aea9d4f1031aef6f400b3414ed9f5fac 197 Pfam PF01583 Adenylylsulphate kinase 24 173 2.7E-73 T 14-10-2018 RY45_16225 d4adc8f3a6e3b7afd383849caff4c578 284 Pfam PF00793 DAHP synthetase I family 10 274 1.1E-68 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_16225 d4adc8f3a6e3b7afd383849caff4c578 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 9.1E-119 T 14-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_16225 d4adc8f3a6e3b7afd383849caff4c578 284 SUPERFAMILY SSF51569 3 278 1.83E-104 T 14-10-2018 RY45_16225 d4adc8f3a6e3b7afd383849caff4c578 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.522 T 14-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_16225 d4adc8f3a6e3b7afd383849caff4c578 284 Gene3D G3DSA:3.20.20.70 2 283 6.4E-99 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_17005 6628f6d06ee12c2fc3fe7de9cd4f601e 360 Pfam PF11563 Protoglobin 17 168 1.2E-36 T 14-10-2018 RY45_17005 6628f6d06ee12c2fc3fe7de9cd4f601e 360 Gene3D G3DSA:1.10.490.10 17 172 4.6E-41 T 14-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RY45_17005 6628f6d06ee12c2fc3fe7de9cd4f601e 360 Pfam PF00990 Diguanylate cyclase, GGDEF domain 203 351 1.3E-36 T 14-10-2018 IPR000160 GGDEF domain RY45_17005 6628f6d06ee12c2fc3fe7de9cd4f601e 360 SMART SM00267 191 355 2.0E-39 T 14-10-2018 IPR000160 GGDEF domain RY45_17005 6628f6d06ee12c2fc3fe7de9cd4f601e 360 SUPERFAMILY SSF46458 5 162 8.63E-37 T 14-10-2018 IPR009050 Globin-like superfamily RY45_17005 6628f6d06ee12c2fc3fe7de9cd4f601e 360 Gene3D G3DSA:3.30.70.270 188 354 5.1E-46 T 14-10-2018 RY45_17005 6628f6d06ee12c2fc3fe7de9cd4f601e 360 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 198 351 1.4E-36 T 14-10-2018 IPR000160 GGDEF domain RY45_17005 6628f6d06ee12c2fc3fe7de9cd4f601e 360 SUPERFAMILY SSF55073 207 350 2.98E-37 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 30.952 T 14-10-2018 IPR023635 Peptide deformylase RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 Pfam PF01327 Polypeptide deformylase 5 152 3.4E-50 T 14-10-2018 IPR023635 Peptide deformylase RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 SUPERFAMILY SSF56420 2 164 1.14E-62 T 14-10-2018 IPR036821 Peptide deformylase superfamily RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 PRINTS PR01576 Peptide deformylase signature 120 149 2.5E-37 T 14-10-2018 IPR023635 Peptide deformylase RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 PRINTS PR01576 Peptide deformylase signature 101 119 2.5E-37 T 14-10-2018 IPR023635 Peptide deformylase RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 PRINTS PR01576 Peptide deformylase signature 89 100 2.5E-37 T 14-10-2018 IPR023635 Peptide deformylase RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 PRINTS PR01576 Peptide deformylase signature 33 62 2.5E-37 T 14-10-2018 IPR023635 Peptide deformylase RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 PIRSF PIRSF004749 1 169 1.6E-56 T 14-10-2018 IPR023635 Peptide deformylase RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 Gene3D G3DSA:3.90.45.10 2 169 6.5E-65 T 14-10-2018 IPR036821 Peptide deformylase superfamily RY45_01570 10f8b87311bc0adaa8623990ff7df2b4 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 2.7E-63 T 14-10-2018 IPR023635 Peptide deformylase RY45_15090 35fcacfa54f577eb1d7233b0e3560b2f 198 Gene3D G3DSA:1.10.10.10 85 180 2.4E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_15090 35fcacfa54f577eb1d7233b0e3560b2f 198 SUPERFAMILY SSF46785 4 84 3.63E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_15090 35fcacfa54f577eb1d7233b0e3560b2f 198 Gene3D G3DSA:1.10.10.10 4 84 3.0E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_15090 35fcacfa54f577eb1d7233b0e3560b2f 198 SUPERFAMILY SSF46785 87 162 1.51E-23 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_15090 35fcacfa54f577eb1d7233b0e3560b2f 198 PIRSF PIRSF019345 2 194 1.8E-56 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RY45_15090 35fcacfa54f577eb1d7233b0e3560b2f 198 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 7 172 2.2E-36 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RY45_15090 35fcacfa54f577eb1d7233b0e3560b2f 198 Pfam PF04079 Segregation and condensation complex subunit ScpB 11 171 1.1E-53 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RY45_09915 4f3f3d6fd746d8d08fa27e59ab2d5955 141 Pfam PF10722 Putative bacterial sensory transduction regulator 2 122 5.3E-10 T 14-10-2018 IPR019660 Putative sensory transduction regulator YbjN RY45_06085 83b2491b1a3af55ac7785de957a41960 183 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 - T 14-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RY45_06085 83b2491b1a3af55ac7785de957a41960 183 SUPERFAMILY SSF50891 18 179 3.94E-47 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily RY45_06085 83b2491b1a3af55ac7785de957a41960 183 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 21 158 1.3E-42 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RY45_06085 83b2491b1a3af55ac7785de957a41960 183 Gene3D G3DSA:2.40.100.10 17 180 4.1E-54 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily RY45_06085 83b2491b1a3af55ac7785de957a41960 183 PIRSF PIRSF001467 7 176 1.3E-21 T 14-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 RY45_06085 83b2491b1a3af55ac7785de957a41960 183 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 1.0E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RY45_06085 83b2491b1a3af55ac7785de957a41960 183 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 148 1.0E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RY45_06085 83b2491b1a3af55ac7785de957a41960 183 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 34 49 1.0E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 14-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 SUPERFAMILY SSF55060 204 380 3.36E-49 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RY45_21405 665310224f27989c3a733a5dd862ecd4 382 Gene3D G3DSA:3.30.230.10 2 205 1.5E-66 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_21405 665310224f27989c3a733a5dd862ecd4 382 Hamap MF_00246 Galactokinase [galK]. 25 381 42.28 T 14-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 Pfam PF08544 GHMP kinases C terminal 279 361 9.1E-13 T 14-10-2018 IPR013750 GHMP kinase, C-terminal domain RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PRINTS PR00473 Galactokinase signature 92 103 1.2E-28 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PRINTS PR00473 Galactokinase signature 112 130 1.2E-28 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PRINTS PR00473 Galactokinase signature 27 45 1.2E-28 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PRINTS PR00473 Galactokinase signature 263 277 1.2E-28 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 Pfam PF10509 Galactokinase galactose-binding signature 11 57 4.6E-23 T 14-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PRINTS PR00959 Mevalonate kinase family signature 25 49 1.0E-44 T 14-10-2018 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PRINTS PR00959 Mevalonate kinase family signature 162 181 1.0E-44 T 14-10-2018 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PRINTS PR00959 Mevalonate kinase family signature 328 345 1.0E-44 T 14-10-2018 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PRINTS PR00959 Mevalonate kinase family signature 119 141 1.0E-44 T 14-10-2018 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 SUPERFAMILY SSF54211 4 203 9.11E-65 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_21405 665310224f27989c3a733a5dd862ecd4 382 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 14-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 PIRSF PIRSF000530 1 382 9.9E-120 T 14-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 Pfam PF00288 GHMP kinases N terminal domain 115 181 2.5E-12 T 14-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RY45_21405 665310224f27989c3a733a5dd862ecd4 382 Gene3D G3DSA:3.30.70.890 206 381 2.1E-59 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RY45_21405 665310224f27989c3a733a5dd862ecd4 382 TIGRFAM TIGR00131 gal_kin: galactokinase 5 381 5.3E-137 T 14-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 PIRSF PIRSF036643 29 601 1.6E-113 T 14-10-2018 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 PIRSF PIRSF036643 792 962 3.8E-16 T 14-10-2018 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 Pfam PF00384 Molybdopterin oxidoreductase 127 578 2.0E-56 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 72 121 9.9E-11 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 Pfam PF01568 Molydopterin dinucleotide binding domain 827 953 2.9E-23 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 SMART SM00926 70 124 3.1E-15 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 Gene3D G3DSA:2.20.25.90 71 123 8.6E-12 T 14-10-2018 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 SUPERFAMILY SSF53706 68 654 1.96E-198 T 14-10-2018 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 SUPERFAMILY SSF50692 761 958 1.31E-38 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 Gene3D G3DSA:3.40.228.10 204 403 2.1E-131 T 14-10-2018 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 Gene3D G3DSA:2.40.40.20 776 959 7.4E-44 T 14-10-2018 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 Gene3D G3DSA:3.40.50.740 136 626 2.1E-131 T 14-10-2018 RY45_15815 a0acfb6c13cbe53ab86c7d74c12b02d3 962 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 75 92 - T 14-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 RY45_03320 3cd7020566f6cdeb9fec47adc850803c 337 SUPERFAMILY SSF54523 44 335 1.16E-30 T 14-10-2018 RY45_03320 3cd7020566f6cdeb9fec47adc850803c 337 Gene3D G3DSA:1.10.40.60 229 295 6.4E-88 T 14-10-2018 IPR038072 GspK, central domain superfamily RY45_03320 3cd7020566f6cdeb9fec47adc850803c 337 Pfam PF03934 Type II secretion system (T2SS), protein K 38 326 8.3E-91 T 14-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 RY45_03320 3cd7020566f6cdeb9fec47adc850803c 337 Gene3D G3DSA:3.30.1300.30 53 320 6.4E-88 T 14-10-2018 RY45_03320 3cd7020566f6cdeb9fec47adc850803c 337 Gene3D G3DSA:1.10.40.60 108 228 6.4E-88 T 14-10-2018 IPR038072 GspK, central domain superfamily RY45_03320 3cd7020566f6cdeb9fec47adc850803c 337 PIRSF PIRSF002786 8 337 2.6E-78 T 14-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 RY45_03320 3cd7020566f6cdeb9fec47adc850803c 337 SUPERFAMILY SSF158544 110 226 2.51E-33 T 14-10-2018 IPR038072 GspK, central domain superfamily RY45_03320 3cd7020566f6cdeb9fec47adc850803c 337 SUPERFAMILY SSF158544 229 281 1.12E-13 T 14-10-2018 IPR038072 GspK, central domain superfamily RY45_10975 bb8b6af1b487530ec0d2fd0646ca1608 245 Gene3D G3DSA:1.10.10.2250 1 78 1.7E-27 T 14-10-2018 RY45_10975 bb8b6af1b487530ec0d2fd0646ca1608 245 Gene3D G3DSA:1.10.10.2260 88 194 1.1E-41 T 14-10-2018 RY45_10975 bb8b6af1b487530ec0d2fd0646ca1608 245 Pfam PF04288 MukE-like family 10 234 1.6E-112 T 14-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 1.1E-195 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 SUPERFAMILY SSF51412 1 477 4.06E-127 T 14-10-2018 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 SMART SM01240 7 473 0.0 T 14-10-2018 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 14-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 Gene3D G3DSA:3.20.20.70 1 486 1.0E-209 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 SMART SM00116 96 144 2.0E-10 T 14-10-2018 IPR000644 CBS domain RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 SMART SM00116 158 206 6.4E-10 T 14-10-2018 IPR000644 CBS domain RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 1.3E-161 T 14-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 PIRSF PIRSF000130 1 487 6.5E-199 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 Pfam PF00571 CBS domain 149 202 7.0E-6 T 14-10-2018 IPR000644 CBS domain RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 Pfam PF00571 CBS domain 95 143 1.9E-8 T 14-10-2018 IPR000644 CBS domain RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 SUPERFAMILY SSF54631 94 203 1.39E-27 T 14-10-2018 RY45_12725 8ad0025d8d676eb940b5cd781d01907a 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 84.166 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SUPERFAMILY SSF141868 589 835 1.07E-80 T 14-10-2018 IPR035919 EAL domain superfamily RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SMART SM00086 243 285 2.8E-7 T 14-10-2018 IPR001610 PAC motif RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SMART SM00086 365 406 17.0 T 14-10-2018 IPR001610 PAC motif RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Pfam PF00990 Diguanylate cyclase, GGDEF domain 417 568 8.8E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 415 568 6.8E-31 T 14-10-2018 IPR000160 GGDEF domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Gene3D G3DSA:3.30.450.40 2 156 1.7E-6 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SMART SM00052 583 830 1.4E-88 T 14-10-2018 IPR001633 EAL domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SUPERFAMILY SSF55785 176 287 6.6E-22 T 14-10-2018 IPR035965 PAS domain superfamily RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Pfam PF00989 PAS fold 172 279 2.5E-14 T 14-10-2018 IPR013767 PAS fold GO:0006355 RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 170 292 3.9E-23 T 14-10-2018 IPR000014 PAS domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 296 412 5.3E-20 T 14-10-2018 IPR000014 PAS domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Gene3D G3DSA:3.20.20.450 585 844 2.2E-87 T 14-10-2018 IPR035919 EAL domain superfamily RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SUPERFAMILY SSF55785 304 413 5.15E-25 T 14-10-2018 IPR035965 PAS domain superfamily RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SUPERFAMILY SSF55073 422 568 2.35E-41 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SMART SM00267 406 576 6.4E-45 T 14-10-2018 IPR000160 GGDEF domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Pfam PF00563 EAL domain 589 825 1.0E-68 T 14-10-2018 IPR001633 EAL domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SUPERFAMILY SSF55781 24 156 1.88E-10 T 14-10-2018 RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Gene3D G3DSA:3.30.70.270 421 584 8.3E-45 T 14-10-2018 RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Pfam PF13426 PAS domain 304 405 3.0E-16 T 14-10-2018 IPR000014 PAS domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Gene3D G3DSA:3.30.450.20 296 420 4.8E-33 T 14-10-2018 RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 Gene3D G3DSA:3.30.450.20 169 295 2.4E-22 T 14-10-2018 RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SMART SM00091 170 236 1.5E-10 T 14-10-2018 IPR000014 PAS domain RY45_00735 2c97f7e011d685ec54e74343ee2ba495 847 SMART SM00091 293 363 3.6E-8 T 14-10-2018 IPR000014 PAS domain RY45_15230 ee28edf9144c4af02e210a1aa727aabf 111 Pfam PF12321 Protein of unknown function (DUF3634) 6 97 2.2E-19 T 14-10-2018 IPR022090 Protein of unknown function DUF3634 RY45_13455 87471a205a16a69ae920a3420958f6a2 617 SUPERFAMILY SSF82866 412 606 3.79E-39 T 14-10-2018 RY45_13455 87471a205a16a69ae920a3420958f6a2 617 Pfam PF02355 Protein export membrane protein 436 602 7.9E-20 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RY45_13455 87471a205a16a69ae920a3420958f6a2 617 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 353 596 1.8E-68 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_13455 87471a205a16a69ae920a3420958f6a2 617 Pfam PF13721 SecD export protein N-terminal TM region 26 112 3.4E-12 T 14-10-2018 IPR027398 SecD export protein N-terminal TM domain RY45_13455 87471a205a16a69ae920a3420958f6a2 617 Pfam PF07549 SecD/SecF GG Motif 135 156 3.0E-4 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RY45_13455 87471a205a16a69ae920a3420958f6a2 617 Gene3D G3DSA:3.30.70.3400 245 435 6.8E-41 T 14-10-2018 RY45_13455 87471a205a16a69ae920a3420958f6a2 617 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 27 616 44.722 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RY45_13455 87471a205a16a69ae920a3420958f6a2 617 Gene3D G3DSA:1.20.1640.10 436 608 6.2E-8 T 14-10-2018 RY45_13455 87471a205a16a69ae920a3420958f6a2 617 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 141 603 1.1E-115 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RY45_13455 87471a205a16a69ae920a3420958f6a2 617 Gene3D G3DSA:3.30.1360.200 299 433 6.8E-41 T 14-10-2018 RY45_13770 3c6f517beb1ca4b34ff005da5cfc7278 122 Gene3D G3DSA:2.60.120.10 18 118 4.9E-30 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_13770 3c6f517beb1ca4b34ff005da5cfc7278 122 SUPERFAMILY SSF51182 19 117 8.58E-27 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_13770 3c6f517beb1ca4b34ff005da5cfc7278 122 Pfam PF05899 Protein of unknown function (DUF861) 42 114 2.6E-18 T 14-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.2E-23 T 14-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 7.6E-23 T 14-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 SMART SM00662 23 234 4.8E-103 T 14-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 14-10-2018 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 Gene3D G3DSA:1.10.150.20 244 329 9.7E-39 T 14-10-2018 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 14-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 SUPERFAMILY SSF56553 53 178 6.98E-41 T 14-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 Gene3D G3DSA:2.170.120.12 53 177 1.5E-83 T 14-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 SUPERFAMILY SSF55257 7 233 7.85E-29 T 14-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 9.2E-111 T 14-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 14-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.607 T 14-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_01955 0678c5d2e02d6a6231f23763a0577406 329 Gene3D G3DSA:3.30.1360.10 17 228 1.5E-83 T 14-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_19630 b36776db77dcb016374f429c8e21d0c5 426 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 13 417 1.0E-103 T 14-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type RY45_19630 b36776db77dcb016374f429c8e21d0c5 426 Pfam PF04403 Paraquat-inducible protein A 56 208 9.4E-41 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like RY45_19630 b36776db77dcb016374f429c8e21d0c5 426 Pfam PF04403 Paraquat-inducible protein A 263 418 1.1E-56 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like RY45_09050 5bd2c98ddb63e9b4bf619dd469e068d0 359 SUPERFAMILY SSF51695 29 354 9.42E-92 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RY45_09050 5bd2c98ddb63e9b4bf619dd469e068d0 359 Gene3D G3DSA:3.20.20.190 27 355 9.8E-125 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RY45_09050 5bd2c98ddb63e9b4bf619dd469e068d0 359 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 33 349 4.4E-67 T 14-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RY45_10560 36889f0a0d5e90c92bd545d62b4e481e 481 Hamap MF_01182 Cytochrome c-552 [nrfA]. 7 480 57.871 T 14-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 RY45_10560 36889f0a0d5e90c92bd545d62b4e481e 481 PIRSF PIRSF000243 12 481 1.6E-126 T 14-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 RY45_10560 36889f0a0d5e90c92bd545d62b4e481e 481 Gene3D G3DSA:1.10.1130.10 46 474 5.4E-190 T 14-10-2018 RY45_10560 36889f0a0d5e90c92bd545d62b4e481e 481 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 41 477 1.3E-245 T 14-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 RY45_10560 36889f0a0d5e90c92bd545d62b4e481e 481 Gene3D G3DSA:1.20.140.10 314 456 5.4E-190 T 14-10-2018 RY45_10560 36889f0a0d5e90c92bd545d62b4e481e 481 Pfam PF02335 Cytochrome c552 46 475 5.7E-181 T 14-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 RY45_10560 36889f0a0d5e90c92bd545d62b4e481e 481 SUPERFAMILY SSF48695 40 475 3.58E-164 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 Pfam PF00512 His Kinase A (phospho-acceptor) domain 388 455 1.7E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 507 640 1.5E-9 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 Gene3D G3DSA:3.40.190.10 137 244 4.7E-13 T 14-10-2018 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 Gene3D G3DSA:3.30.565.10 465 643 3.3E-18 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 SUPERFAMILY SSF55874 453 644 4.85E-21 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 SMART SM00387 505 642 2.7E-10 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 SMART SM00388 387 461 4.1E-6 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 SUPERFAMILY SSF47384 381 455 8.63E-8 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 Gene3D G3DSA:1.10.287.130 365 457 5.0E-17 T 14-10-2018 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 Gene3D G3DSA:3.40.190.10 52 136 4.7E-13 T 14-10-2018 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 SUPERFAMILY SSF53850 49 283 3.0E-10 T 14-10-2018 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 PRINTS PR00344 Bacterial sensor protein C-terminal signature 602 620 3.0E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 588 3.0E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_16960 cd8ce7a2978d2b60d5c2b66b2425531a 659 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 52 294 1.5E-32 T 14-10-2018 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 PIRSF PIRSF001369 7 375 4.0E-117 T 14-10-2018 IPR024176 Citrate synthase, bacterial-type RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 375 1.3E-150 T 14-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 SUPERFAMILY SSF48256 10 375 7.59E-125 T 14-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 Pfam PF00285 Citrate synthase, C-terminal domain 11 357 1.1E-116 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 Gene3D G3DSA:1.10.580.10 32 355 6.6E-121 T 14-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 ProSitePatterns PS00480 Citrate synthase signature. 258 270 - T 14-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 PRINTS PR00143 Citrate synthase signature 328 342 6.6E-40 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 PRINTS PR00143 Citrate synthase signature 251 271 6.6E-40 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 PRINTS PR00143 Citrate synthase signature 176 191 6.6E-40 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 PRINTS PR00143 Citrate synthase signature 126 139 6.6E-40 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 PRINTS PR00143 Citrate synthase signature 308 324 6.6E-40 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 PRINTS PR00143 Citrate synthase signature 198 226 6.6E-40 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_11530 3fbd0effe4b82436373d0f82df5f175d 375 Gene3D G3DSA:1.10.230.10 224 322 6.6E-121 T 14-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 Gene3D G3DSA:3.10.20.30 48 362 1.5E-150 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 Gene3D G3DSA:3.40.50.300 4 278 1.5E-150 T 14-10-2018 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 SUPERFAMILY SSF52540 3 301 9.13E-83 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 4.3E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 4.3E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 4.3E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.3E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 45.265 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 Gene3D G3DSA:1.10.150.300 120 200 1.5E-150 T 14-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.3E-39 T 14-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.5E-170 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 PIRSF PIRSF006641 1 363 7.1E-156 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 Pfam PF01926 50S ribosome-binding GTPase 5 115 3.3E-21 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_16285 d4b6026cec41859a915bf57a840db0ec 363 SUPERFAMILY SSF81271 279 359 8.94E-36 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 Gene3D G3DSA:3.30.450.40 409 572 2.4E-11 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 SUPERFAMILY SSF109604 586 668 1.19E-6 T 14-10-2018 RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 SUPERFAMILY SSF55781 430 575 7.57E-10 T 14-10-2018 RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 SUPERFAMILY SSF109604 819 931 1.26E-9 T 14-10-2018 RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 Gene3D G3DSA:3.30.450.20 165 223 4.0E-12 T 14-10-2018 RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 Gene3D G3DSA:3.30.450.20 224 337 4.0E-12 T 14-10-2018 RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 Pfam PF13487 HD domain 819 884 2.4E-25 T 14-10-2018 RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 SMART SM00471 590 902 9.7E-4 T 14-10-2018 IPR003607 HD/PDEase domain RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 Gene3D G3DSA:1.10.3210.10 573 676 1.9E-19 T 14-10-2018 RY45_05180 a4d7d478bf3180302afe32c48b2890e4 962 Gene3D G3DSA:1.10.3210.10 798 942 5.6E-29 T 14-10-2018 RY45_17535 105536955c3b289d14b35acc5479fec8 325 Pfam PF03150 Di-haem cytochrome c peroxidase 33 181 3.6E-50 T 14-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 RY45_17535 105536955c3b289d14b35acc5479fec8 325 Pfam PF00034 Cytochrome c 189 299 9.4E-18 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_17535 105536955c3b289d14b35acc5479fec8 325 Gene3D G3DSA:1.10.760.10 34 181 2.1E-112 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_17535 105536955c3b289d14b35acc5479fec8 325 SUPERFAMILY SSF46626 18 169 4.36E-48 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_17535 105536955c3b289d14b35acc5479fec8 325 Gene3D G3DSA:1.10.760.10 32 305 2.1E-112 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_17535 105536955c3b289d14b35acc5479fec8 325 SUPERFAMILY SSF46626 168 319 1.26E-43 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_17535 105536955c3b289d14b35acc5479fec8 325 PIRSF PIRSF000294 18 323 3.6E-127 T 14-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 RY45_12305 f154bbb9e45581a29f69594de812974d 177 Gene3D G3DSA:3.40.630.30 3 160 7.8E-13 T 14-10-2018 RY45_12305 f154bbb9e45581a29f69594de812974d 177 Pfam PF00583 Acetyltransferase (GNAT) family 61 139 1.1E-4 T 14-10-2018 IPR000182 GNAT domain RY45_12305 f154bbb9e45581a29f69594de812974d 177 SUPERFAMILY SSF55729 5 153 5.13E-16 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_02350 1b256ba82fd1480aff3e14367a868755 357 Pfam PF13609 Gram-negative porin 14 323 2.2E-21 T 14-10-2018 RY45_02350 1b256ba82fd1480aff3e14367a868755 357 Gene3D G3DSA:2.40.160.10 22 357 1.8E-40 T 14-10-2018 IPR023614 Porin domain superfamily RY45_02350 1b256ba82fd1480aff3e14367a868755 357 SUPERFAMILY SSF56935 25 357 1.4E-47 T 14-10-2018 RY45_13720 70c0d54a1423800616fc1faf492a974a 631 Pfam PF03880 DbpA RNA binding domain 499 569 6.5E-22 T 14-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain RY45_13720 70c0d54a1423800616fc1faf492a974a 631 Gene3D G3DSA:3.40.50.300 2 214 9.1E-75 T 14-10-2018 RY45_13720 70c0d54a1423800616fc1faf492a974a 631 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 3 571 44.876 T 14-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 RY45_13720 70c0d54a1423800616fc1faf492a974a 631 SMART SM00487 27 225 4.2E-60 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_13720 70c0d54a1423800616fc1faf492a974a 631 Gene3D G3DSA:3.40.50.300 217 435 5.5E-52 T 14-10-2018 RY45_13720 70c0d54a1423800616fc1faf492a974a 631 Gene3D G3DSA:3.30.70.330 499 572 2.0E-12 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RY45_13720 70c0d54a1423800616fc1faf492a974a 631 SMART SM00490 261 342 5.5E-32 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_13720 70c0d54a1423800616fc1faf492a974a 631 Pfam PF00271 Helicase conserved C-terminal domain 234 342 5.8E-28 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_13720 70c0d54a1423800616fc1faf492a974a 631 SUPERFAMILY SSF52540 76 363 5.76E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13720 70c0d54a1423800616fc1faf492a974a 631 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_13720 70c0d54a1423800616fc1faf492a974a 631 Pfam PF00270 DEAD/DEAH box helicase 33 198 3.9E-47 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_12750 9b0ef07fa9a81a362965ff4b5d99dbcd 309 SUPERFAMILY SSF103481 38 139 1.18E-15 T 14-10-2018 RY45_12750 9b0ef07fa9a81a362965ff4b5d99dbcd 309 Pfam PF00892 EamA-like transporter family 149 289 8.1E-13 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12750 9b0ef07fa9a81a362965ff4b5d99dbcd 309 Pfam PF00892 EamA-like transporter family 10 137 1.6E-16 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12750 9b0ef07fa9a81a362965ff4b5d99dbcd 309 SUPERFAMILY SSF103481 190 290 6.8E-12 T 14-10-2018 RY45_20830 19354c1e19462e4dc79aa53e55e4906d 258 SUPERFAMILY SSF161098 11 257 5.61E-41 T 14-10-2018 IPR035906 MetI-like superfamily RY45_20830 19354c1e19462e4dc79aa53e55e4906d 258 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 256 1.7E-10 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_20830 19354c1e19462e4dc79aa53e55e4906d 258 Gene3D G3DSA:1.10.3720.10 10 255 1.5E-36 T 14-10-2018 IPR035906 MetI-like superfamily RY45_19590 46e1cb070ea78ea90cbfd65dc66cc2f3 90 PIRSF PIRSF029827 1 90 5.0E-42 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RY45_19590 46e1cb070ea78ea90cbfd65dc66cc2f3 90 SUPERFAMILY SSF111148 1 89 3.4E-39 T 14-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 RY45_19590 46e1cb070ea78ea90cbfd65dc66cc2f3 90 Gene3D G3DSA:1.10.3880.10 1 90 3.1E-38 T 14-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 RY45_19590 46e1cb070ea78ea90cbfd65dc66cc2f3 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 26.868 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RY45_19590 46e1cb070ea78ea90cbfd65dc66cc2f3 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 4.0E-33 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RY45_19590 46e1cb070ea78ea90cbfd65dc66cc2f3 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.3E-39 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 SUPERFAMILY SSF55073 269 423 3.06E-48 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 Pfam PF13188 PAS domain 138 189 4.6E-8 T 14-10-2018 IPR000014 PAS domain RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 Gene3D G3DSA:3.30.450.20 3 134 4.6E-16 T 14-10-2018 RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 SUPERFAMILY SSF55785 122 251 1.12E-18 T 14-10-2018 IPR035965 PAS domain superfamily RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 SMART SM00267 253 426 8.7E-63 T 14-10-2018 IPR000160 GGDEF domain RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 SUPERFAMILY SSF55785 26 133 1.05E-9 T 14-10-2018 IPR035965 PAS domain superfamily RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 SMART SM00091 137 201 2.2E-4 T 14-10-2018 IPR000014 PAS domain RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 SMART SM00091 8 78 55.0 T 14-10-2018 IPR000014 PAS domain RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 Pfam PF08448 PAS fold 14 126 7.1E-8 T 14-10-2018 IPR013656 PAS fold-4 RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 260 423 3.5E-53 T 14-10-2018 IPR000160 GGDEF domain RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 260 4.5E-17 T 14-10-2018 IPR000014 PAS domain RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 Gene3D G3DSA:3.30.450.20 135 254 1.2E-26 T 14-10-2018 RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 Gene3D G3DSA:3.30.70.270 257 426 3.4E-55 T 14-10-2018 RY45_11070 14d713cb8a1da8badab3274ec9a79785 431 Pfam PF00990 Diguanylate cyclase, GGDEF domain 264 421 1.4E-47 T 14-10-2018 IPR000160 GGDEF domain RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Pfam PF00501 AMP-binding enzyme 542 931 3.4E-91 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:3.30.559.30 1745 1986 3.5E-72 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2046 2061 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1412 1554 1.6E-21 T 14-10-2018 IPR010060 Non-ribosomal peptide synthase RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:3.40.50.12780 527 924 1.2E-112 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1057 1072 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SUPERFAMILY SSF52777 1109 1305 1.78E-25 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:3.30.559.10 1567 1937 3.5E-72 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:1.10.1200.10 1027 1104 9.5E-20 T 14-10-2018 IPR036736 ACP-like superfamily RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:3.30.559.10 1105 1279 1.3E-38 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SUPERFAMILY SSF52777 78 256 6.78E-43 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:3.30.559.30 260 505 3.0E-121 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 562 952 4.9E-111 T 14-10-2018 IPR010071 Amino acid adenylation domain RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SUPERFAMILY SSF52777 267 510 5.56E-53 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:3.30.559.30 1280 1534 1.7E-46 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SUPERFAMILY SSF52777 1747 1987 2.45E-30 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:1.10.10.1830 5 57 1.2E-5 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SMART SM00823 Phosphopantetheine attachment site 1034 1101 7.0E-4 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Pfam PF00550 Phosphopantetheine attachment site 2025 2090 2.5E-13 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Pfam PF00550 Phosphopantetheine attachment site 1036 1096 1.9E-11 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SUPERFAMILY SSF52777 1294 1531 1.56E-23 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 ProSitePatterns PS00455 Putative AMP-binding domain signature. 684 695 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Pfam PF00668 Condensation domain 1562 1975 7.3E-53 T 14-10-2018 IPR001242 Condensation domain RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Pfam PF00668 Condensation domain 1114 1456 5.5E-44 T 14-10-2018 IPR001242 Condensation domain RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Pfam PF00668 Condensation domain 77 509 8.3E-83 T 14-10-2018 IPR001242 Condensation domain RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SUPERFAMILY SSF47336 1028 1097 1.57E-15 T 14-10-2018 IPR036736 ACP-like superfamily RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SUPERFAMILY SSF56801 523 1046 1.14E-139 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 SUPERFAMILY SSF52777 1567 1753 2.0E-32 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:3.30.300.30 925 1026 1.3E-23 T 14-10-2018 RY45_12855 62165cdcbfa29112856289b4fdfd0df1 2099 Gene3D G3DSA:3.30.559.10 77 448 3.0E-121 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RY45_10820 a68e83e95a4de5be499a5fa318f31552 190 Gene3D G3DSA:2.40.320.10 1 183 8.5E-49 T 14-10-2018 RY45_10820 a68e83e95a4de5be499a5fa318f31552 190 Pfam PF01928 CYTH domain 11 174 4.8E-27 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RY45_10820 a68e83e95a4de5be499a5fa318f31552 190 SUPERFAMILY SSF55154 10 177 4.25E-42 T 14-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 RY45_10820 a68e83e95a4de5be499a5fa318f31552 190 SMART SM01118 9 180 1.4E-20 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RY45_10820 a68e83e95a4de5be499a5fa318f31552 190 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 10 138 3.0E-11 T 14-10-2018 RY45_09770 be70551b4329617de919cd593951b205 339 Gene3D G3DSA:3.90.1150.10 247 338 6.5E-33 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_09770 be70551b4329617de919cd593951b205 339 Pfam PF01212 Beta-eliminating lyase 5 285 4.9E-96 T 14-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 RY45_09770 be70551b4329617de919cd593951b205 339 SUPERFAMILY SSF53383 3 336 3.86E-116 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_09770 be70551b4329617de919cd593951b205 339 Gene3D G3DSA:3.40.640.10 1 246 7.5E-100 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_09770 be70551b4329617de919cd593951b205 339 PIRSF PIRSF017617 1 339 4.8E-137 T 14-10-2018 IPR023603 Threonine aldolase RY45_11195 ac0b3927af0f353a2eea27250dcd66de 377 Pfam PF00268 Ribonucleotide reductase, small chain 32 333 3.6E-48 T 14-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11195 ac0b3927af0f353a2eea27250dcd66de 377 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 14-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11195 ac0b3927af0f353a2eea27250dcd66de 377 Gene3D G3DSA:1.10.620.20 2 341 6.8E-144 T 14-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RY45_11195 ac0b3927af0f353a2eea27250dcd66de 377 SUPERFAMILY SSF47240 3 341 8.12E-110 T 14-10-2018 IPR009078 Ferritin-like superfamily RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 SUPERFAMILY SSF53218 352 496 3.53E-45 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 352 488 3.0E-33 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 428 461 - T 14-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 10 142 3.0E-48 T 14-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Gene3D G3DSA:3.90.105.10 204 349 7.8E-137 T 14-10-2018 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 10 164 1.3E-43 T 14-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 SUPERFAMILY SSF63882 182 348 3.01E-47 T 14-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Gene3D G3DSA:3.40.980.10 350 500 7.8E-137 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Gene3D G3DSA:2.170.190.11 226 316 7.8E-137 T 14-10-2018 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Pfam PF00994 Probable molybdopterin binding domain 357 491 2.0E-27 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Gene3D G3DSA:2.40.340.10 501 571 7.8E-137 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Gene3D G3DSA:2.20.25.120 53 84 3.7E-57 T 14-10-2018 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 SUPERFAMILY SSF52540 8 168 1.42E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Pfam PF03454 MoeA C-terminal region (domain IV) 508 575 1.3E-16 T 14-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 SUPERFAMILY SSF63867 500 578 3.79E-21 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Gene3D G3DSA:3.40.50.300 10 164 3.7E-57 T 14-10-2018 RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 SMART SM00852 355 492 2.3E-44 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_15885 64df324942f2bf9022f8a09adc57ccd7 581 Pfam PF03453 MoeA N-terminal region (domain I and II) 184 342 1.4E-39 T 14-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 10 29 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 243 265 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 97 113 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 162 178 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 180 197 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 142 160 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 124 141 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 216 228 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 35 48 7.2E-87 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 ProSitePatterns PS00433 Phosphofructokinase signature. 247 265 - T 14-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 Gene3D G3DSA:3.40.50.450 7 290 1.9E-118 T 14-10-2018 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 SUPERFAMILY SSF53784 3 315 1.7E-117 T 14-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 PIRSF PIRSF000532 4 322 2.3E-127 T 14-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 7 303 3.1E-131 T 14-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 Gene3D G3DSA:3.40.50.460 146 255 1.9E-118 T 14-10-2018 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 Pfam PF00365 Phosphofructokinase 7 278 3.9E-110 T 14-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RY45_10950 c24a4030ca02cbeac97a98e533bfd3fb 323 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 5 323 47.372 T 14-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RY45_02910 3fa27b19c2aaf58034fa6b6460a61e7f 166 SUPERFAMILY SSF55729 9 155 1.36E-26 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_02910 3fa27b19c2aaf58034fa6b6460a61e7f 166 Gene3D G3DSA:3.40.630.30 3 153 1.1E-32 T 14-10-2018 RY45_02910 3fa27b19c2aaf58034fa6b6460a61e7f 166 Pfam PF00583 Acetyltransferase (GNAT) family 31 143 3.3E-14 T 14-10-2018 IPR000182 GNAT domain RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 Hamap MF_00015 LexA repressor [lexA]. 3 204 32.76 T 14-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 TIGRFAM TIGR00498 lexA: repressor LexA 1 204 3.9E-80 T 14-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 SUPERFAMILY SSF51306 81 203 9.24E-38 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 Pfam PF00717 Peptidase S24-like 119 184 3.1E-16 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 Pfam PF01726 LexA DNA binding domain 1 65 1.7E-31 T 14-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 Gene3D G3DSA:1.10.10.10 1 69 7.5E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 Gene3D G3DSA:2.10.109.10 85 207 2.9E-45 T 14-10-2018 RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 127 138 1.2E-12 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 116 126 1.2E-12 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 155 167 1.2E-12 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RY45_01200 b5bb08b3032ad1e9289de9495b9ade5d 207 SUPERFAMILY SSF46785 3 69 4.02E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09895 54d877a9c0c3b9c122eba8f4822b8d10 134 Pfam PF00816 H-NS histone family 32 128 2.5E-18 T 14-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RY45_09895 54d877a9c0c3b9c122eba8f4822b8d10 134 SUPERFAMILY SSF81273 93 134 1.18E-9 T 14-10-2018 RY45_09895 54d877a9c0c3b9c122eba8f4822b8d10 134 Gene3D G3DSA:4.10.430.10 92 134 1.9E-20 T 14-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 RY45_09895 54d877a9c0c3b9c122eba8f4822b8d10 134 SUPERFAMILY SSF81273 2 58 1.71E-15 T 14-10-2018 RY45_09895 54d877a9c0c3b9c122eba8f4822b8d10 134 Gene3D G3DSA:1.10.287.1050 1 82 2.4E-30 T 14-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 RY45_09895 54d877a9c0c3b9c122eba8f4822b8d10 134 SMART SM00528 88 134 4.0E-20 T 14-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RY45_09895 54d877a9c0c3b9c122eba8f4822b8d10 134 PIRSF PIRSF002096 1 134 1.2E-54 T 14-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RY45_19310 3258483b6a8eda4463abe1feebe22dde 259 Pfam PF00950 ABC 3 transport family 3 256 3.8E-76 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 RY45_19310 3258483b6a8eda4463abe1feebe22dde 259 Gene3D G3DSA:1.10.3470.10 29 259 3.0E-10 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_19310 3258483b6a8eda4463abe1feebe22dde 259 SUPERFAMILY SSF81345 3 257 1.7E-40 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_00945 92f095892b5bb3d0ade239e2867e016e 218 PRINTS PR01021 OMPA domain signature 144 159 5.2E-11 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_00945 92f095892b5bb3d0ade239e2867e016e 218 PRINTS PR01021 OMPA domain signature 114 136 5.2E-11 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_00945 92f095892b5bb3d0ade239e2867e016e 218 PRINTS PR01021 OMPA domain signature 159 175 5.2E-11 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_00945 92f095892b5bb3d0ade239e2867e016e 218 Gene3D G3DSA:3.30.1330.60 77 218 6.9E-50 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_00945 92f095892b5bb3d0ade239e2867e016e 218 ProSitePatterns PS01068 OmpA-like domain. 146 190 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RY45_00945 92f095892b5bb3d0ade239e2867e016e 218 Pfam PF00691 OmpA family 113 208 5.9E-21 T 14-10-2018 IPR006665 OmpA-like domain RY45_00945 92f095892b5bb3d0ade239e2867e016e 218 Pfam PF13488 Glycine zipper 36 83 3.0E-10 T 14-10-2018 IPR039567 Glycine zipper domain RY45_00945 92f095892b5bb3d0ade239e2867e016e 218 SUPERFAMILY SSF103088 101 216 1.29E-35 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 SMART SM01018 660 743 5.5E-46 T 14-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Gene3D G3DSA:3.10.196.10 911 1226 7.0E-145 T 14-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Pfam PF02310 B12 binding domain 751 844 2.6E-18 T 14-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Pfam PF00809 Pterin binding enzyme 364 602 1.0E-60 T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 PIRSF PIRSF000381 5 1199 0.0 T 14-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Gene3D G3DSA:3.20.20.20 344 646 6.6E-132 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 943 1212 4.2E-124 T 14-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 SUPERFAMILY SSF82282 10 403 6.93E-117 T 14-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Pfam PF02607 B12 binding domain 664 735 1.2E-25 T 14-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Gene3D G3DSA:3.40.50.280 747 898 2.0E-56 T 14-10-2018 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Gene3D G3DSA:3.20.20.330 5 343 1.1E-123 T 14-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 SUPERFAMILY SSF56507 905 1226 6.8E-129 T 14-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Pfam PF02574 Homocysteine S-methyltransferase 21 329 9.8E-79 T 14-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Gene3D G3DSA:1.10.1240.10 652 740 1.1E-40 T 14-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 SUPERFAMILY SSF47644 655 742 2.75E-29 T 14-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 SUPERFAMILY SSF51717 360 633 5.1E-89 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 SUPERFAMILY SSF52242 745 897 1.96E-44 T 14-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 TIGRFAM TIGR02082 metH: methionine synthase 16 1196 0.0 T 14-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02455 d14be847ebed39ec37e7cfb42edf2b9d 1227 Gene3D G3DSA:1.10.288.10 940 1096 7.0E-145 T 14-10-2018 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 Hamap MF_01899 Ribonuclease D [rnd]. 12 379 42.574 T 14-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 SUPERFAMILY SSF47819 303 378 7.48E-18 T 14-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 SUPERFAMILY SSF53098 8 216 2.06E-56 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 SMART SM00474 12 178 8.6E-33 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 Pfam PF01612 3'-5' exonuclease 12 177 4.4E-30 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 Gene3D G3DSA:1.10.150.80 202 300 1.1E-20 T 14-10-2018 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 Gene3D G3DSA:1.10.150.80 301 379 1.4E-25 T 14-10-2018 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 SMART SM00341 217 296 1.4E-6 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 Gene3D G3DSA:3.30.420.10 2 201 2.0E-57 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 TIGRFAM TIGR01388 rnd: ribonuclease D 14 377 1.1E-111 T 14-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 SUPERFAMILY SSF47819 198 308 1.5E-28 T 14-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 RY45_11820 b8da7a84cb5fa22c59ebc2499f94504e 379 Pfam PF00570 HRDC domain 220 286 2.5E-12 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RY45_01580 8f9ce9820a9cc859e3366b53ecf69eef 371 SUPERFAMILY SSF102405 83 290 6.87E-39 T 14-10-2018 RY45_01580 8f9ce9820a9cc859e3366b53ecf69eef 371 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 72 290 1.2E-77 T 14-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 RY45_01580 8f9ce9820a9cc859e3366b53ecf69eef 371 Gene3D G3DSA:3.40.50.450 3 292 1.9E-98 T 14-10-2018 RY45_01580 8f9ce9820a9cc859e3366b53ecf69eef 371 SUPERFAMILY SSF47781 7 50 6.3E-5 T 14-10-2018 IPR010994 RuvA domain 2-like RY45_01580 8f9ce9820a9cc859e3366b53ecf69eef 371 Pfam PF02481 DNA recombination-mediator protein A 76 281 4.7E-75 T 14-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 RY45_02800 9c7f2e8333d26b244068b050338ebfd5 539 SUPERFAMILY SSF51011 467 536 3.45E-7 T 14-10-2018 RY45_02800 9c7f2e8333d26b244068b050338ebfd5 539 Pfam PF00128 Alpha amylase, catalytic domain 203 393 6.4E-16 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_02800 9c7f2e8333d26b244068b050338ebfd5 539 Pfam PF00128 Alpha amylase, catalytic domain 89 174 3.0E-23 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_02800 9c7f2e8333d26b244068b050338ebfd5 539 SMART SM00642 63 450 1.4E-38 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_02800 9c7f2e8333d26b244068b050338ebfd5 539 SUPERFAMILY SSF51445 58 460 1.58E-69 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_02800 9c7f2e8333d26b244068b050338ebfd5 539 Gene3D G3DSA:2.60.40.1180 456 537 6.3E-9 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_02800 9c7f2e8333d26b244068b050338ebfd5 539 Gene3D G3DSA:3.20.20.80 58 190 5.6E-35 T 14-10-2018 RY45_02800 9c7f2e8333d26b244068b050338ebfd5 539 Gene3D G3DSA:3.20.20.80 191 455 1.9E-32 T 14-10-2018 RY45_21580 6676775d52e1024da4ab2f2f16036cfb 443 SUPERFAMILY SSF54368 2 104 6.02E-22 T 14-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_21580 6676775d52e1024da4ab2f2f16036cfb 443 Pfam PF00120 Glutamine synthetase, catalytic domain 109 437 1.4E-113 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_21580 6676775d52e1024da4ab2f2f16036cfb 443 SMART SM01230 107 362 1.6E-115 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_21580 6676775d52e1024da4ab2f2f16036cfb 443 Gene3D G3DSA:3.10.20.70 1 108 1.9E-6 T 14-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_21580 6676775d52e1024da4ab2f2f16036cfb 443 SUPERFAMILY SSF55931 108 440 1.96E-113 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RY45_21580 6676775d52e1024da4ab2f2f16036cfb 443 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 243 258 - T 14-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RY45_21580 6676775d52e1024da4ab2f2f16036cfb 443 Gene3D G3DSA:3.30.590.10 110 441 1.3E-108 T 14-10-2018 RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 SUPERFAMILY SSF53098 319 467 8.34E-52 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 SUPERFAMILY SSF47781 558 630 1.8E-20 T 14-10-2018 IPR010994 RuvA domain 2-like RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Pfam PF09371 Tex-like protein N-terminal domain 10 193 1.4E-67 T 14-10-2018 IPR018974 Tex-like protein, N-terminal RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Pfam PF16921 Tex protein YqgF-like domain 324 449 2.6E-53 T 14-10-2018 IPR032639 Tex protein, YqgF-like domain RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Pfam PF12836 Helix-hairpin-helix motif 489 553 7.8E-30 T 14-10-2018 RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 SUPERFAMILY SSF50249 636 720 3.13E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 SMART SM00732 323 422 1.0E-33 T 14-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Gene3D G3DSA:3.30.420.140 322 449 1.1E-153 T 14-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Gene3D G3DSA:2.40.50.140 629 722 1.9E-28 T 14-10-2018 RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Pfam PF00575 S1 RNA binding domain 650 718 2.1E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Gene3D G3DSA:1.10.10.650 3 110 2.4E-40 T 14-10-2018 IPR023319 Tex-like protein, HTH domain superfamily RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 SUPERFAMILY SSF47781 468 556 1.22E-28 T 14-10-2018 IPR010994 RuvA domain 2-like RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Gene3D G3DSA:1.10.150.310 497 628 1.7E-51 T 14-10-2018 RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 SUPERFAMILY SSF158832 6 318 1.01E-116 T 14-10-2018 RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 Gene3D G3DSA:1.10.3500.10 113 496 1.1E-153 T 14-10-2018 IPR023323 Tex-like domain superfamily RY45_01810 7dcbd04641d9325f79e34357751eb5bd 768 SMART SM00316 647 718 7.7E-25 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_08765 22938121c9e63d39a3945cea99e5ff9d 690 Pfam PF06733 DEAD_2 107 266 8.4E-6 T 14-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 RY45_08765 22938121c9e63d39a3945cea99e5ff9d 690 SMART SM00491 539 671 3.0E-29 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RY45_08765 22938121c9e63d39a3945cea99e5ff9d 690 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 33 690 35.954 T 14-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 RY45_08765 22938121c9e63d39a3945cea99e5ff9d 690 Pfam PF13307 Helicase C-terminal domain 530 684 2.9E-32 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RY45_08765 22938121c9e63d39a3945cea99e5ff9d 690 Gene3D G3DSA:3.40.50.300 25 317 1.2E-39 T 14-10-2018 RY45_08765 22938121c9e63d39a3945cea99e5ff9d 690 Gene3D G3DSA:3.40.50.300 506 687 2.6E-31 T 14-10-2018 RY45_08765 22938121c9e63d39a3945cea99e5ff9d 690 SUPERFAMILY SSF52540 20 665 2.21E-14 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 37 53 2.6E-12 T 14-10-2018 IPR002177 DNA-binding protein Dps RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 132 150 2.6E-12 T 14-10-2018 IPR002177 DNA-binding protein Dps RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 61 77 2.6E-12 T 14-10-2018 IPR002177 DNA-binding protein Dps RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 ProSitePatterns PS00819 Dps protein family signature 2. 63 77 - T 14-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 ProSitePatterns PS00818 Dps protein family signature 1. 37 53 - T 14-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 PIRSF PIRSF005900 1 155 2.9E-44 T 14-10-2018 IPR002177 DNA-binding protein Dps RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 SUPERFAMILY SSF47240 2 154 1.97E-44 T 14-10-2018 IPR009078 Ferritin-like superfamily RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 Gene3D G3DSA:1.20.1260.10 1 154 2.9E-52 T 14-10-2018 IPR012347 Ferritin-like RY45_05925 a8262fa0bb5d6091eb02c6d8f96aec7e 155 Pfam PF00210 Ferritin-like domain 17 154 1.1E-26 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RY45_13250 3ca4d3333b13280c75e861f3855d1872 354 Gene3D G3DSA:2.40.370.10 46 230 6.0E-68 T 14-10-2018 IPR023374 AttH-like domain superfamily RY45_13250 3ca4d3333b13280c75e861f3855d1872 354 Pfam PF07143 CrtC N-terminal lipocalin domain 59 227 5.2E-54 T 14-10-2018 IPR010791 AttH domain RY45_13250 3ca4d3333b13280c75e861f3855d1872 354 Gene3D G3DSA:2.40.370.10 232 354 1.7E-37 T 14-10-2018 IPR023374 AttH-like domain superfamily RY45_13250 3ca4d3333b13280c75e861f3855d1872 354 Pfam PF17186 Lipocalin-like domain 230 354 2.1E-38 T 14-10-2018 RY45_13250 3ca4d3333b13280c75e861f3855d1872 354 SUPERFAMILY SSF159245 35 354 1.83E-94 T 14-10-2018 RY45_14945 cb6660b0309039aa425ac000af68f668 328 Gene3D G3DSA:3.40.50.920 190 325 4.3E-42 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_14945 cb6660b0309039aa425ac000af68f668 328 SUPERFAMILY SSF52518 4 190 1.0E-65 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_14945 cb6660b0309039aa425ac000af68f668 328 Gene3D G3DSA:3.40.50.970 1 189 2.4E-76 T 14-10-2018 RY45_14945 cb6660b0309039aa425ac000af68f668 328 SUPERFAMILY SSF52922 191 323 1.83E-35 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_14945 cb6660b0309039aa425ac000af68f668 328 SMART SM00861 4 179 5.8E-65 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_14945 cb6660b0309039aa425ac000af68f668 328 Pfam PF02780 Transketolase, C-terminal domain 199 315 4.7E-34 T 14-10-2018 IPR033248 Transketolase, C-terminal domain RY45_14945 cb6660b0309039aa425ac000af68f668 328 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 8.0E-48 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_12150 819b3e7a543c988c66edc03a7e54aeac 456 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 450 3.7E-218 T 14-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RY45_12150 819b3e7a543c988c66edc03a7e54aeac 456 Pfam PF03315 Serine dehydratase beta chain 3 154 2.5E-55 T 14-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RY45_12150 819b3e7a543c988c66edc03a7e54aeac 456 Gene3D G3DSA:3.30.1330.90 10 158 6.0E-49 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RY45_12150 819b3e7a543c988c66edc03a7e54aeac 456 SUPERFAMILY SSF143548 16 156 1.57E-44 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RY45_12150 819b3e7a543c988c66edc03a7e54aeac 456 Pfam PF03313 Serine dehydratase alpha chain 183 447 9.1E-97 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit RY45_12595 aa5f4e2968a39e26b4fa9acb6c13bc0e 637 SUPERFAMILY SSF54534 262 366 9.16E-28 T 14-10-2018 RY45_12595 aa5f4e2968a39e26b4fa9acb6c13bc0e 637 Gene3D G3DSA:1.10.4030.30 44 191 1.0E-16 T 14-10-2018 RY45_12595 aa5f4e2968a39e26b4fa9acb6c13bc0e 637 Pfam PF13616 PPIC-type PPIASE domain 268 366 6.6E-27 T 14-10-2018 RY45_12595 aa5f4e2968a39e26b4fa9acb6c13bc0e 637 Gene3D G3DSA:3.10.50.40 270 369 2.5E-34 T 14-10-2018 RY45_12595 aa5f4e2968a39e26b4fa9acb6c13bc0e 637 Gene3D G3DSA:1.10.4030.30 245 382 2.5E-34 T 14-10-2018 RY45_12595 aa5f4e2968a39e26b4fa9acb6c13bc0e 637 SUPERFAMILY SSF109998 44 241 5.69E-37 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily RY45_12595 aa5f4e2968a39e26b4fa9acb6c13bc0e 637 Pfam PF13624 SurA N-terminal domain 2 167 2.0E-50 T 14-10-2018 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 Pfam PF02311 AraC-like ligand binding domain 31 163 1.1E-19 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 SUPERFAMILY SSF46689 237 284 2.64E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 SUPERFAMILY SSF51215 13 171 9.02E-32 T 14-10-2018 IPR037923 Transcription regulator HTH-like RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 SUPERFAMILY SSF46689 183 233 8.15E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 Pfam PF12833 Helix-turn-helix domain 206 284 1.6E-20 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 267 283 8.7E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 267 8.7E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 Gene3D G3DSA:2.60.120.280 13 176 1.3E-63 T 14-10-2018 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 237 279 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 Gene3D G3DSA:1.10.10.60 183 241 3.5E-14 T 14-10-2018 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 SMART SM00342 200 283 1.2E-32 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_10230 89714c0c7f0f9887e17a923e21fadb04 289 Gene3D G3DSA:1.10.10.2730 242 284 6.6E-18 T 14-10-2018 RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 SUPERFAMILY SSF48179 171 301 2.95E-41 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 169 7.8E-50 T 14-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 Gene3D G3DSA:3.40.50.720 1 170 4.8E-53 T 14-10-2018 RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 172 299 3.6E-36 T 14-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 PIRSF PIRSF000103 1 306 8.6E-77 T 14-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 300 4.8E-124 T 14-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 SUPERFAMILY SSF51735 3 169 1.54E-43 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 Gene3D G3DSA:1.10.1040.10 172 304 3.3E-46 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RY45_12460 1eb33958fcc4c1d63a75c9565141e2fa 306 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 14-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 RY45_12450 519c8fb5d8bd9a4faad0ed193f6c9cc1 478 Pfam PF13520 Amino acid permease 5 419 1.1E-71 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_12450 519c8fb5d8bd9a4faad0ed193f6c9cc1 478 TIGRFAM TIGR03810 arg_ornith_anti: arginine-ornithine antiporter 3 476 6.8E-180 T 14-10-2018 IPR022461 Arginine/ornithine antiporter GO:0005887|GO:0006527|GO:0043858 RY45_12450 519c8fb5d8bd9a4faad0ed193f6c9cc1 478 PIRSF PIRSF006060 1 471 1.9E-48 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_12450 519c8fb5d8bd9a4faad0ed193f6c9cc1 478 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 476 4.8E-174 T 14-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 RY45_12450 519c8fb5d8bd9a4faad0ed193f6c9cc1 478 Gene3D G3DSA:1.20.1740.10 1 451 2.0E-61 T 14-10-2018 RY45_14510 8ea538987c14b3a3667c0a397ed25a8c 209 Gene3D G3DSA:3.90.10.10 146 206 1.7E-6 T 14-10-2018 RY45_14510 8ea538987c14b3a3667c0a397ed25a8c 209 SUPERFAMILY SSF48695 68 196 9.2E-24 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_14510 8ea538987c14b3a3667c0a397ed25a8c 209 Pfam PF13435 Cytochrome c554 and c-prime 51 106 0.0041 T 14-10-2018 IPR023155 Cytochrome c-552/4 RY45_14510 8ea538987c14b3a3667c0a397ed25a8c 209 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 160 197 4.8E-5 T 14-10-2018 IPR010177 Doubled CXXCH motif RY45_14060 1250a40e80ee485459be608ae95d2ba5 266 Pfam PF05036 Sporulation related domain 187 262 9.8E-13 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 RY45_14060 1250a40e80ee485459be608ae95d2ba5 266 SUPERFAMILY SSF110997 187 264 8.89E-14 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RY45_14060 1250a40e80ee485459be608ae95d2ba5 266 Gene3D G3DSA:3.30.70.1070 183 263 3.0E-7 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RY45_05735 f6000221911991872488886da3c163a5 492 SUPERFAMILY SSF55486 3 491 3.17E-121 T 14-10-2018 RY45_05735 f6000221911991872488886da3c163a5 492 PIRSF PIRSF006615 1 492 1.5E-192 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_05735 f6000221911991872488886da3c163a5 492 Gene3D G3DSA:1.10.1370.30 1 492 6.9E-198 T 14-10-2018 RY45_05735 f6000221911991872488886da3c163a5 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 442 460 6.9E-41 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_05735 f6000221911991872488886da3c163a5 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 397 418 6.9E-41 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_05735 f6000221911991872488886da3c163a5 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 260 279 6.9E-41 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_05735 f6000221911991872488886da3c163a5 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 287 303 6.9E-41 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_05735 f6000221911991872488886da3c163a5 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 240 259 6.9E-41 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_05735 f6000221911991872488886da3c163a5 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 327 346 6.9E-41 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_05735 f6000221911991872488886da3c163a5 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 144 164 6.9E-41 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_05735 f6000221911991872488886da3c163a5 492 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 12 490 1.4E-87 T 14-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RY45_01240 d59c2bfc2d5982f93e038371103af472 259 Gene3D G3DSA:1.10.3130.10 1 141 4.2E-52 T 14-10-2018 RY45_01240 d59c2bfc2d5982f93e038371103af472 259 SMART SM00971 8 112 2.7E-59 T 14-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 RY45_01240 d59c2bfc2d5982f93e038371103af472 259 SUPERFAMILY SSF51161 6 257 2.91E-63 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_01240 d59c2bfc2d5982f93e038371103af472 259 Pfam PF06426 Serine acetyltransferase, N-terminal 9 111 1.0E-37 T 14-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 RY45_01240 d59c2bfc2d5982f93e038371103af472 259 PIRSF PIRSF000441 74 257 2.1E-58 T 14-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 RY45_01240 d59c2bfc2d5982f93e038371103af472 259 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 201 229 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_01240 d59c2bfc2d5982f93e038371103af472 259 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 81 241 4.5E-74 T 14-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 RY45_01240 d59c2bfc2d5982f93e038371103af472 259 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 192 226 4.8E-8 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_01240 d59c2bfc2d5982f93e038371103af472 259 Gene3D G3DSA:2.160.10.10 142 259 2.8E-36 T 14-10-2018 RY45_01255 aa7edfa58bd910b1ce9d9d8fd3e146fe 216 SUPERFAMILY SSF52317 1 213 5.2E-59 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_01255 aa7edfa58bd910b1ce9d9d8fd3e146fe 216 PIRSF PIRSF006320 1 216 2.2E-107 T 14-10-2018 IPR026041 Glyoxalase ElbB RY45_01255 aa7edfa58bd910b1ce9d9d8fd3e146fe 216 Pfam PF01965 DJ-1/PfpI family 13 141 2.6E-6 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RY45_01255 aa7edfa58bd910b1ce9d9d8fd3e146fe 216 Gene3D G3DSA:3.40.50.880 1 216 2.7E-87 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Gene3D G3DSA:3.30.300.20 202 280 9.3E-29 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_17040 d842f4a423605048f091c3e1363a00b4 500 SUPERFAMILY SSF47794 359 419 7.53E-16 T 14-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 345 4.7E-124 T 14-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Pfam PF13184 NusA-like KH domain 233 300 6.1E-25 T 14-10-2018 IPR025249 KH domain, NusA-like GO:0003723 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 368 417 1.1E-18 T 14-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication RY45_17040 d842f4a423605048f091c3e1363a00b4 500 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 444 492 4.6E-18 T 14-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Gene3D G3DSA:2.40.50.140 138 201 5.7E-18 T 14-10-2018 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Gene3D G3DSA:3.30.1480.10 1 132 1.9E-41 T 14-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Pfam PF08529 NusA N-terminal domain 4 126 3.5E-35 T 14-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Pfam PF14520 Helix-hairpin-helix domain 435 489 1.6E-11 T 14-10-2018 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 SUPERFAMILY SSF50249 134 202 7.05E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Gene3D G3DSA:3.30.300.20 281 349 3.9E-24 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_17040 d842f4a423605048f091c3e1363a00b4 500 SUPERFAMILY SSF54814 204 281 1.18E-27 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 SUPERFAMILY SSF54814 282 346 2.53E-15 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 413 28.363 T 14-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Gene3D G3DSA:1.10.150.20 357 424 2.1E-25 T 14-10-2018 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 SUPERFAMILY SSF69705 1 129 1.44E-39 T 14-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 SUPERFAMILY SSF47794 432 495 6.91E-17 T 14-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 SMART SM00316 136 203 2.8E-7 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_17040 d842f4a423605048f091c3e1363a00b4 500 Gene3D G3DSA:1.10.150.20 434 493 1.5E-24 T 14-10-2018 RY45_17295 b60cc2b631e7635b380c56256eb52387 325 Gene3D G3DSA:3.40.50.720 102 292 2.9E-107 T 14-10-2018 RY45_17295 b60cc2b631e7635b380c56256eb52387 325 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 21 319 1.5E-12 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RY45_17295 b60cc2b631e7635b380c56256eb52387 325 SUPERFAMILY SSF52283 1 138 2.76E-18 T 14-10-2018 RY45_17295 b60cc2b631e7635b380c56256eb52387 325 SUPERFAMILY SSF51735 106 289 4.22E-46 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_17295 b60cc2b631e7635b380c56256eb52387 325 Gene3D G3DSA:3.40.50.720 2 307 2.9E-107 T 14-10-2018 RY45_17295 b60cc2b631e7635b380c56256eb52387 325 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 289 2.4E-46 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RY45_13785 485a22b7f5bae20b1878ff2dc9be4452 207 SUPERFAMILY SSF47616 79 200 8.63E-26 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_13785 485a22b7f5bae20b1878ff2dc9be4452 207 Gene3D G3DSA:3.40.30.10 1 83 7.6E-35 T 14-10-2018 RY45_13785 485a22b7f5bae20b1878ff2dc9be4452 207 SUPERFAMILY SSF52833 1 85 1.6E-23 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_13785 485a22b7f5bae20b1878ff2dc9be4452 207 Gene3D G3DSA:1.20.1050.10 84 202 1.8E-43 T 14-10-2018 RY45_13785 485a22b7f5bae20b1878ff2dc9be4452 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 80 7.3E-15 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_01730 20f1c691162cd6aa3bad8961340cfea8 169 Gene3D G3DSA:3.40.50.300 3 169 1.4E-62 T 14-10-2018 RY45_01730 20f1c691162cd6aa3bad8961340cfea8 169 SUPERFAMILY SSF52540 3 167 2.09E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01730 20f1c691162cd6aa3bad8961340cfea8 169 Pfam PF01202 Shikimate kinase 13 125 1.2E-9 T 14-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RY45_01730 20f1c691162cd6aa3bad8961340cfea8 169 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 164 1.7E-63 T 14-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 RY45_18880 581417a2341515791c7e31458fc3b41c 402 PIRSF PIRSF001491 1 402 1.3E-160 T 14-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RY45_18880 581417a2341515791c7e31458fc3b41c 402 Hamap MF_00740 Phosphopentomutase [deoB]. 1 402 54.484 T 14-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RY45_18880 581417a2341515791c7e31458fc3b41c 402 Gene3D G3DSA:3.40.720.10 3 402 9.2E-154 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_18880 581417a2341515791c7e31458fc3b41c 402 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 400 5.1E-172 T 14-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RY45_18880 581417a2341515791c7e31458fc3b41c 402 Gene3D G3DSA:3.30.70.1250 113 234 9.2E-154 T 14-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RY45_18880 581417a2341515791c7e31458fc3b41c 402 Pfam PF01676 Metalloenzyme superfamily 2 393 1.8E-40 T 14-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 RY45_18880 581417a2341515791c7e31458fc3b41c 402 SUPERFAMILY SSF143856 115 231 1.83E-50 T 14-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RY45_18880 581417a2341515791c7e31458fc3b41c 402 SUPERFAMILY SSF53649 1 402 5.23E-74 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_14765 ab596698754617e9463d93832d7ccfb9 505 SUPERFAMILY SSF52172 22 175 3.27E-12 T 14-10-2018 IPR011006 CheY-like superfamily RY45_14765 ab596698754617e9463d93832d7ccfb9 505 Pfam PF11849 Domain of unknown function (DUF3369) 146 301 4.0E-33 T 14-10-2018 IPR021800 Domain of unknown function DUF3369 RY45_14765 ab596698754617e9463d93832d7ccfb9 505 Gene3D G3DSA:3.40.50.2300 15 168 6.9E-14 T 14-10-2018 RY45_14765 ab596698754617e9463d93832d7ccfb9 505 Pfam PF01966 HD domain 327 447 2.1E-19 T 14-10-2018 IPR006674 HD domain RY45_14765 ab596698754617e9463d93832d7ccfb9 505 SUPERFAMILY SSF109604 316 488 3.08E-38 T 14-10-2018 RY45_14765 ab596698754617e9463d93832d7ccfb9 505 SMART SM00471 320 457 1.3E-8 T 14-10-2018 IPR003607 HD/PDEase domain RY45_14765 ab596698754617e9463d93832d7ccfb9 505 Gene3D G3DSA:1.10.3210.10 300 501 1.6E-70 T 14-10-2018 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 SMART SM00830 9 89 1.3E-29 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 PIRSF PIRSF001499 1 378 2.6E-160 T 14-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 Pfam PF02153 Prephenate dehydrogenase 142 348 3.7E-28 T 14-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 Gene3D G3DSA:1.10.3660.10 252 378 2.8E-48 T 14-10-2018 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 SUPERFAMILY SSF48600 3 86 2.01E-22 T 14-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 SUPERFAMILY SSF51735 95 241 2.24E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 86 6.8E-40 T 14-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 Pfam PF01817 Chorismate mutase type II 9 86 4.5E-20 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 Gene3D G3DSA:1.20.59.10 1 81 1.1E-17 T 14-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 SUPERFAMILY SSF48179 246 369 2.95E-40 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_09065 7611228c9f880100a5ef238b9a74a26d 379 Gene3D G3DSA:3.40.50.720 82 250 7.2E-40 T 14-10-2018 RY45_11730 c20d858b2f198c830ce56f632301749d 345 SUPERFAMILY SSF56042 163 336 6.13E-55 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_11730 c20d858b2f198c830ce56f632301749d 345 TIGRFAM TIGR00476 selD: selenide, water dikinase 5 311 5.0E-138 T 14-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RY45_11730 c20d858b2f198c830ce56f632301749d 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 167 339 1.9E-31 T 14-10-2018 IPR010918 PurM-like, C-terminal domain RY45_11730 c20d858b2f198c830ce56f632301749d 345 Hamap MF_00625 Selenide, water dikinase [selD]. 3 344 45.07 T 14-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RY45_11730 c20d858b2f198c830ce56f632301749d 345 SUPERFAMILY SSF55326 5 156 2.09E-40 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_11730 c20d858b2f198c830ce56f632301749d 345 Gene3D G3DSA:3.90.650.10 162 344 2.0E-54 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_11730 c20d858b2f198c830ce56f632301749d 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 48 155 1.2E-18 T 14-10-2018 IPR016188 PurM-like, N-terminal domain RY45_11730 c20d858b2f198c830ce56f632301749d 345 PIRSF PIRSF036407 1 344 3.1E-118 T 14-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RY45_11730 c20d858b2f198c830ce56f632301749d 345 Gene3D G3DSA:3.30.1330.10 1 159 1.4E-48 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_15410 16c94516632950e73ed00dfc56ab9884 647 Gene3D G3DSA:3.40.50.300 3 248 1.5E-67 T 14-10-2018 RY45_15410 16c94516632950e73ed00dfc56ab9884 647 Pfam PF12704 MacB-like periplasmic core domain 272 488 6.7E-40 T 14-10-2018 IPR025857 MacB-like periplasmic core domain RY45_15410 16c94516632950e73ed00dfc56ab9884 647 SMART SM00382 34 221 2.7E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15410 16c94516632950e73ed00dfc56ab9884 647 Pfam PF00005 ABC transporter 25 173 2.3E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_15410 16c94516632950e73ed00dfc56ab9884 647 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_15410 16c94516632950e73ed00dfc56ab9884 647 SUPERFAMILY SSF52540 5 227 3.27E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15410 16c94516632950e73ed00dfc56ab9884 647 Pfam PF02687 FtsX-like permease family 552 640 1.2E-11 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RY45_00870 708c596e796ed9748355340a20accf82 497 SMART SM00849 34 227 2.5E-30 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_00870 708c596e796ed9748355340a20accf82 497 Pfam PF00258 Flavodoxin 256 389 3.3E-11 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RY45_00870 708c596e796ed9748355340a20accf82 497 Gene3D G3DSA:2.20.28.10 441 496 2.2E-20 T 14-10-2018 RY45_00870 708c596e796ed9748355340a20accf82 497 Pfam PF00753 Metallo-beta-lactamase superfamily 33 173 1.9E-7 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_00870 708c596e796ed9748355340a20accf82 497 SUPERFAMILY SSF52218 251 396 9.39E-35 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_00870 708c596e796ed9748355340a20accf82 497 Gene3D G3DSA:3.60.15.10 1 247 5.7E-105 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_00870 708c596e796ed9748355340a20accf82 497 SUPERFAMILY SSF56281 8 285 3.8E-50 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_00870 708c596e796ed9748355340a20accf82 497 Pfam PF00301 Rubredoxin 443 488 8.2E-19 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 RY45_00870 708c596e796ed9748355340a20accf82 497 Gene3D G3DSA:3.40.50.360 253 395 7.1E-38 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_00870 708c596e796ed9748355340a20accf82 497 Hamap MF_01312 Anaerobic nitric oxide reductase flavorubredoxin [norV]. 1 492 79.425 T 14-10-2018 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin GO:0005506|GO:0016966 RY45_00870 708c596e796ed9748355340a20accf82 497 PRINTS PR00163 Rubredoxin signature 472 488 2.2E-6 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 RY45_00870 708c596e796ed9748355340a20accf82 497 PRINTS PR00163 Rubredoxin signature 442 458 2.2E-6 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 RY45_00870 708c596e796ed9748355340a20accf82 497 SUPERFAMILY SSF57802 441 492 9.42E-16 T 14-10-2018 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 Gene3D G3DSA:1.10.8.10 157 204 7.8E-21 T 14-10-2018 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 Pfam PF07499 RuvA, C-terminal domain 161 203 5.7E-16 T 14-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 203 3.3E-66 T 14-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 Pfam PF01330 RuvA N terminal domain 2 62 9.4E-21 T 14-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 Gene3D G3DSA:2.40.50.140 1 66 1.1E-27 T 14-10-2018 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 SUPERFAMILY SSF50249 2 63 2.87E-18 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 Gene3D G3DSA:1.10.150.20 67 143 3.5E-26 T 14-10-2018 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 31.208 T 14-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 SUPERFAMILY SSF47781 66 137 1.56E-20 T 14-10-2018 IPR010994 RuvA domain 2-like RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 SUPERFAMILY SSF46929 159 203 2.88E-11 T 14-10-2018 IPR036267 RuvA, C-terminal domain superfamily RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 SMART SM00278 73 92 1.3 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 SMART SM00278 108 127 0.051 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_18685 258a70fceac8922fb2ae5b95da75cd1a 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 2.2E-14 T 14-10-2018 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 2.1E-29 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 PRINTS PR01549 Autoinducer synthesis protein signature 95 107 2.1E-29 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 PRINTS PR01549 Autoinducer synthesis protein signature 120 141 2.1E-29 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 2.1E-29 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 PRINTS PR01549 Autoinducer synthesis protein signature 142 163 2.1E-29 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 2.1E-29 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 SUPERFAMILY SSF55729 18 203 4.21E-38 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 14-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 Pfam PF00765 Autoinducer synthase 15 168 7.6E-30 T 14-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RY45_03220 0ec8f7391064d24b571347f1b261ff78 207 Gene3D G3DSA:3.40.630.30 9 199 5.9E-46 T 14-10-2018 RY45_01890 35c06f8dbb7462a78ef798609b8e253e 122 SUPERFAMILY SSF50193 1 122 1.2E-52 T 14-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_01890 35c06f8dbb7462a78ef798609b8e253e 122 Gene3D G3DSA:2.40.150.20 1 122 3.2E-56 T 14-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_01890 35c06f8dbb7462a78ef798609b8e253e 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 3.3E-56 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RY45_01890 35c06f8dbb7462a78ef798609b8e253e 122 SMART SM01374 1 122 3.7E-87 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RY45_01890 35c06f8dbb7462a78ef798609b8e253e 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 4.3E-59 T 14-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RY45_01890 35c06f8dbb7462a78ef798609b8e253e 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.363 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RY45_01890 35c06f8dbb7462a78ef798609b8e253e 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 14-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_06675 2678f82494dd5159437fb910dbf6a7e6 136 Gene3D G3DSA:3.10.180.10 1 135 5.4E-32 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_06675 2678f82494dd5159437fb910dbf6a7e6 136 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 128 1.1E-13 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_06675 2678f82494dd5159437fb910dbf6a7e6 136 SUPERFAMILY SSF54593 4 133 1.18E-23 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_17275 25b05feee55af0dda967f722aead6bc1 475 Pfam PF02378 Phosphotransferase system, EIIC 20 294 2.6E-35 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_17275 25b05feee55af0dda967f722aead6bc1 475 Gene3D G3DSA:3.30.1360.60 377 456 1.5E-11 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_17275 25b05feee55af0dda967f722aead6bc1 475 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 393 410 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_17275 25b05feee55af0dda967f722aead6bc1 475 SUPERFAMILY SSF55604 381 450 3.92E-12 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_17275 25b05feee55af0dda967f722aead6bc1 475 Pfam PF00367 phosphotransferase system, EIIB 383 415 1.7E-6 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_05795 4df12a202e640c825e623d1b27e78cdb 494 TIGRFAM TIGR02627 rhamnulo_kin: rhamnulokinase 7 458 1.1E-190 T 14-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 RY45_05795 4df12a202e640c825e623d1b27e78cdb 494 SUPERFAMILY SSF53067 5 244 5.7E-46 T 14-10-2018 RY45_05795 4df12a202e640c825e623d1b27e78cdb 494 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 252 433 3.1E-29 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RY45_05795 4df12a202e640c825e623d1b27e78cdb 494 Gene3D G3DSA:3.30.420.40 236 485 3.7E-93 T 14-10-2018 RY45_05795 4df12a202e640c825e623d1b27e78cdb 494 Gene3D G3DSA:3.30.420.40 2 235 3.3E-86 T 14-10-2018 RY45_05795 4df12a202e640c825e623d1b27e78cdb 494 SUPERFAMILY SSF53067 248 484 1.73E-35 T 14-10-2018 RY45_05795 4df12a202e640c825e623d1b27e78cdb 494 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 239 3.0E-29 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 359 1.1E-28 T 14-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 Gene3D G3DSA:3.30.300.150 703 828 1.9E-29 T 14-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 Gene3D G3DSA:3.40.50.300 13 177 7.2E-101 T 14-10-2018 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 Gene3D G3DSA:1.10.8.60 8 239 7.2E-101 T 14-10-2018 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 Gene3D G3DSA:1.20.272.10 242 361 3.6E-41 T 14-10-2018 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 SUPERFAMILY SSF52540 33 222 1.14E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11790 b792e217ffe502691a5ace425a8243aa 848 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 705 843 1.6E-37 T 14-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.6E-43 T 14-10-2018 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 SUPERFAMILY SSF48019 243 360 6.29E-30 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 1.0E-130 T 14-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RY45_11790 b792e217ffe502691a5ace425a8243aa 848 SMART SM00382 37 178 3.0E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_04070 6dd7d05fc91f322a3907eeb300b1f048 596 ProSitePatterns PS00455 Putative AMP-binding domain signature. 181 192 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_04070 6dd7d05fc91f322a3907eeb300b1f048 596 Gene3D G3DSA:3.40.50.12780 1 318 2.3E-54 T 14-10-2018 RY45_04070 6dd7d05fc91f322a3907eeb300b1f048 596 SUPERFAMILY SSF56801 5 594 2.49E-106 T 14-10-2018 RY45_04070 6dd7d05fc91f322a3907eeb300b1f048 596 Gene3D G3DSA:3.40.50.12780 319 454 9.8E-31 T 14-10-2018 RY45_04070 6dd7d05fc91f322a3907eeb300b1f048 596 Pfam PF00501 AMP-binding enzyme 12 464 2.5E-91 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_10420 e61f10de64e9778b4bb03514c02187b9 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 3.1E-30 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RY45_10420 e61f10de64e9778b4bb03514c02187b9 104 SUPERFAMILY SSF103481 5 102 3.4E-20 T 14-10-2018 RY45_10420 e61f10de64e9778b4bb03514c02187b9 104 Gene3D G3DSA:1.10.3730.20 1 104 3.3E-34 T 14-10-2018 RY45_18425 c66142112a6cb66f7e3ad3fca07f563f 368 Pfam PF01553 Acyltransferase 91 202 1.9E-9 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_18425 c66142112a6cb66f7e3ad3fca07f563f 368 SUPERFAMILY SSF69593 87 294 5.49E-8 T 14-10-2018 RY45_10335 978d09955a429419675903949964f167 936 Gene3D G3DSA:1.10.287.1150 85 167 2.2E-27 T 14-10-2018 RY45_10335 978d09955a429419675903949964f167 936 SUPERFAMILY SSF52518 576 794 9.52E-53 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_10335 978d09955a429419675903949964f167 936 Gene3D G3DSA:3.40.50.11610 724 930 1.4E-168 T 14-10-2018 RY45_10335 978d09955a429419675903949964f167 936 SUPERFAMILY SSF52518 122 532 1.05E-86 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_10335 978d09955a429419675903949964f167 936 Pfam PF02779 Transketolase, pyrimidine binding domain 594 788 3.0E-64 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_10335 978d09955a429419675903949964f167 936 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 933 0.0 T 14-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RY45_10335 978d09955a429419675903949964f167 936 PIRSF PIRSF000157 1 935 0.0 T 14-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RY45_10335 978d09955a429419675903949964f167 936 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 792 933 9.1E-53 T 14-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RY45_10335 978d09955a429419675903949964f167 936 Pfam PF00676 Dehydrogenase E1 component 220 516 4.7E-52 T 14-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RY45_10335 978d09955a429419675903949964f167 936 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 2.0E-16 T 14-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RY45_10335 978d09955a429419675903949964f167 936 SMART SM00861 594 787 5.2E-60 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_10335 978d09955a429419675903949964f167 936 Gene3D G3DSA:3.40.50.970 168 534 3.2E-147 T 14-10-2018 RY45_10335 978d09955a429419675903949964f167 936 Gene3D G3DSA:3.40.50.12470 557 803 1.4E-168 T 14-10-2018 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 423 711 1.8E-94 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 173 727 1.5E-133 T 14-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 Gene3D G3DSA:1.10.274.10 191 316 3.1E-57 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 Gene3D G3DSA:3.50.30.10 174 401 3.1E-57 T 14-10-2018 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 Gene3D G3DSA:3.30.450.40 1 165 1.6E-41 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 SUPERFAMILY SSF52009 295 414 1.31E-24 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 SUPERFAMILY SSF55781 2 158 1.61E-27 T 14-10-2018 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 353 364 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 SUPERFAMILY SSF51621 421 717 8.11E-95 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 SUPERFAMILY SSF47831 199 311 2.48E-27 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 Pfam PF01590 GAF domain 18 153 1.5E-12 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 SMART SM00065 17 164 2.6E-20 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 Gene3D G3DSA:3.20.20.60 402 745 1.6E-99 T 14-10-2018 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 635 650 1.0E-22 T 14-10-2018 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 618 633 1.0E-22 T 14-10-2018 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 461 480 1.0E-22 T 14-10-2018 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 671 683 1.0E-22 T 14-10-2018 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 Pfam PF00391 PEP-utilising enzyme, mobile domain 322 393 5.4E-14 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RY45_03820 5d07a24d9bdd6c41d7464a7d8bc2f26d 759 Pfam PF05524 PEP-utilising enzyme, N-terminal 173 296 4.3E-23 T 14-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RY45_09675 1bb3efc94d0ff1d89021f0fd8de41f2f 322 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 7 320 23.995 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09675 1bb3efc94d0ff1d89021f0fd8de41f2f 322 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 208 221 - T 14-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09675 1bb3efc94d0ff1d89021f0fd8de41f2f 322 Pfam PF00146 NADH dehydrogenase 15 313 3.9E-120 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09675 1bb3efc94d0ff1d89021f0fd8de41f2f 322 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 53 68 - T 14-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_16040 8cd2da732150e63b73cdc0c3949da7d7 378 Gene3D G3DSA:3.40.640.10 63 285 3.7E-129 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_16040 8cd2da732150e63b73cdc0c3949da7d7 378 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 375 1.4E-129 T 14-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 RY45_16040 8cd2da732150e63b73cdc0c3949da7d7 378 Gene3D G3DSA:3.90.1150.10 12 371 3.7E-129 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_16040 8cd2da732150e63b73cdc0c3949da7d7 378 SUPERFAMILY SSF53383 1 374 2.39E-88 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_16040 8cd2da732150e63b73cdc0c3949da7d7 378 Pfam PF00155 Aminotransferase class I and II 40 370 2.0E-28 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_05155 87004489148d45129ced46a93d989969 400 PIRSF PIRSF002401 1 378 1.8E-139 T 14-10-2018 IPR035101 GTP-binding protein, Obg-type RY45_05155 87004489148d45129ced46a93d989969 400 SUPERFAMILY SSF82051 2 157 7.32E-57 T 14-10-2018 IPR036726 GTP1/OBG domain superfamily RY45_05155 87004489148d45129ced46a93d989969 400 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 8.4E-146 T 14-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RY45_05155 87004489148d45129ced46a93d989969 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.4E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05155 87004489148d45129ced46a93d989969 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.4E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05155 87004489148d45129ced46a93d989969 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.4E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05155 87004489148d45129ced46a93d989969 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.4E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05155 87004489148d45129ced46a93d989969 400 Gene3D G3DSA:2.70.210.12 1 158 2.3E-62 T 14-10-2018 IPR036726 GTP1/OBG domain superfamily RY45_05155 87004489148d45129ced46a93d989969 400 Gene3D G3DSA:3.40.50.300 159 336 6.5E-51 T 14-10-2018 RY45_05155 87004489148d45129ced46a93d989969 400 Pfam PF01018 GTP1/OBG 4 156 4.2E-59 T 14-10-2018 IPR006169 GTP1/OBG domain RY45_05155 87004489148d45129ced46a93d989969 400 Pfam PF01926 50S ribosome-binding GTPase 161 284 4.5E-24 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05155 87004489148d45129ced46a93d989969 400 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 14-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 RY45_05155 87004489148d45129ced46a93d989969 400 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.112 T 14-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RY45_05155 87004489148d45129ced46a93d989969 400 SUPERFAMILY SSF52540 152 337 1.27E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03145 3d11f250210440b213d60afc76732129 185 Pfam PF01292 Prokaryotic cytochrome b561 9 170 5.0E-24 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RY45_03145 3d11f250210440b213d60afc76732129 185 Gene3D G3DSA:1.20.950.20 2 160 2.6E-11 T 14-10-2018 RY45_03145 3d11f250210440b213d60afc76732129 185 SUPERFAMILY SSF81342 5 175 5.89E-37 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RY45_09165 9fbede436e5ab6ac6eff2f65c66ca33e 80 Pfam PF01206 Sulfurtransferase TusA 3 64 3.1E-16 T 14-10-2018 IPR001455 TusA-like domain RY45_09165 9fbede436e5ab6ac6eff2f65c66ca33e 80 Gene3D G3DSA:3.30.110.40 1 71 6.1E-13 T 14-10-2018 IPR036868 TusA-like domain superfamily RY45_09165 9fbede436e5ab6ac6eff2f65c66ca33e 80 SUPERFAMILY SSF64307 1 66 1.7E-15 T 14-10-2018 IPR036868 TusA-like domain superfamily RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 SUPERFAMILY SSF53901 266 385 1.73E-37 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 PIRSF PIRSF000429 1 387 1.8E-108 T 14-10-2018 IPR002155 Thiolase GO:0016747 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 5 385 9.1E-122 T 14-10-2018 IPR002155 Thiolase GO:0016747 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 83 101 - T 14-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 Gene3D G3DSA:3.40.47.10 5 270 2.0E-134 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 SUPERFAMILY SSF53901 2 264 8.27E-74 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 Pfam PF00108 Thiolase, N-terminal domain 3 256 1.6E-82 T 14-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 14-10-2018 IPR020610 Thiolase, active site GO:0016747 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 Gene3D G3DSA:3.40.47.10 125 384 2.0E-134 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_12125 befa7cb71f7dccac8d5f772e12c30d21 387 Pfam PF02803 Thiolase, C-terminal domain 265 385 7.2E-41 T 14-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RY45_13685 88d0661dffda8a592cdf10db511f502b 252 PIRSF PIRSF006102 19 238 2.7E-77 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_13685 88d0661dffda8a592cdf10db511f502b 252 Pfam PF02508 Rnf-Nqr subunit, membrane protein 24 219 5.9E-65 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_13685 88d0661dffda8a592cdf10db511f502b 252 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 20 229 27.422 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 RY45_13685 88d0661dffda8a592cdf10db511f502b 252 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 25 226 2.7E-82 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 SUPERFAMILY SSF52413 302 419 1.96E-29 T 14-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 319 419 2.3E-23 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 292 4.5E-24 T 14-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 PIRSF PIRSF000124 8 425 1.0E-52 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 9 182 5.3E-33 T 14-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 9 413 9.9E-120 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 SUPERFAMILY SSF48179 203 294 2.21E-25 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 PIRSF PIRSF500136 2 426 4.2E-155 T 14-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 SMART SM00984 319 419 9.9E-35 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 SUPERFAMILY SSF51735 9 192 1.72E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 Gene3D G3DSA:3.40.50.720 3 198 2.3E-58 T 14-10-2018 RY45_15035 ecf1b238b5ed2dcf3ef2fbd7819b14f7 426 Gene3D G3DSA:3.40.50.720 202 425 8.7E-58 T 14-10-2018 RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 Pfam PF00691 OmpA family 213 303 7.0E-18 T 14-10-2018 IPR006665 OmpA-like domain RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 ProSitePatterns PS01068 OmpA-like domain. 248 292 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 Gene3D G3DSA:2.40.160.20 11 199 1.3E-36 T 14-10-2018 RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 SUPERFAMILY SSF56925 23 165 4.19E-25 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 Gene3D G3DSA:3.30.1330.60 200 329 1.9E-38 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 SUPERFAMILY SSF103088 202 325 1.96E-30 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 PRINTS PR01021 OMPA domain signature 214 236 4.8E-20 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 PRINTS PR01021 OMPA domain signature 246 261 4.8E-20 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 PRINTS PR01021 OMPA domain signature 261 277 4.8E-20 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06855 03a7e9298f77b7e8cc308f98db54d8d7 333 Pfam PF01389 OmpA-like transmembrane domain 24 182 8.4E-47 T 14-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 RY45_09780 5ee0179bd8c49b11a25032d769ae2bc4 344 Gene3D G3DSA:3.40.50.2300 1 128 2.1E-23 T 14-10-2018 RY45_09780 5ee0179bd8c49b11a25032d769ae2bc4 344 SMART SM00448 1 113 7.1E-20 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_09780 5ee0179bd8c49b11a25032d769ae2bc4 344 SUPERFAMILY SSF52172 1 116 1.12E-25 T 14-10-2018 IPR011006 CheY-like superfamily RY45_09780 5ee0179bd8c49b11a25032d769ae2bc4 344 Gene3D G3DSA:3.40.1550.10 147 341 8.7E-35 T 14-10-2018 IPR028976 CheC-like superfamily RY45_09780 5ee0179bd8c49b11a25032d769ae2bc4 344 Pfam PF00072 Response regulator receiver domain 3 113 2.8E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_09780 5ee0179bd8c49b11a25032d769ae2bc4 344 SUPERFAMILY SSF103039 148 340 1.96E-42 T 14-10-2018 IPR028976 CheC-like superfamily RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Gene3D G3DSA:2.40.50.140 358 444 3.3E-25 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Gene3D G3DSA:2.40.50.140 98 181 9.4E-6 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Gene3D G3DSA:2.40.50.140 269 357 5.6E-29 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SUPERFAMILY SSF50249 255 369 1.43E-27 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PIRSF PIRSF002111 1 534 5.2E-216 T 14-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SUPERFAMILY SSF50249 88 174 6.19E-13 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Gene3D G3DSA:2.40.50.140 445 528 7.1E-21 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Pfam PF00575 S1 RNA binding domain 449 520 1.7E-15 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Pfam PF00575 S1 RNA binding domain 278 347 4.1E-19 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Pfam PF00575 S1 RNA binding domain 190 260 1.2E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Pfam PF00575 S1 RNA binding domain 361 434 3.7E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Pfam PF00575 S1 RNA binding domain 105 171 2.1E-7 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Pfam PF00575 S1 RNA binding domain 19 84 6.9E-6 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.4E-97 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SUPERFAMILY SSF50249 189 275 1.64E-26 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Gene3D G3DSA:2.40.50.140 6 97 2.1E-17 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SUPERFAMILY SSF50249 2 112 3.12E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.6E-233 T 14-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SUPERFAMILY SSF50249 363 447 7.08E-22 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 Gene3D G3DSA:2.40.50.140 187 268 6.9E-28 T 14-10-2018 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SMART SM00316 362 434 9.7E-23 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SMART SM00316 19 87 1.4E-4 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SMART SM00316 103 171 7.4E-8 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SMART SM00316 449 520 2.7E-20 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SMART SM00316 190 260 7.0E-28 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SMART SM00316 275 347 6.9E-25 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_09840 853d6c1048a4de2355e4cc5fc4cad95b 556 SUPERFAMILY SSF50249 429 540 4.92E-23 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 333 42.51 T 14-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 197 2.8E-74 T 14-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 SUPERFAMILY SSF56655 2 331 8.74E-117 T 14-10-2018 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 PIRSF PIRSF500210 1 336 2.9E-128 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 151 174 2.0E-76 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 30 57 2.0E-76 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 2.0E-76 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 307 332 2.0E-76 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 182 205 2.0E-76 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 208 235 2.0E-76 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 273 285 - T 14-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 Gene3D G3DSA:3.30.540.10 1 198 1.9E-74 T 14-10-2018 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 PIRSF PIRSF000904 1 337 4.2E-125 T 14-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RY45_12660 c2d15102d01d9d54e97d21115fa9efb9 344 Gene3D G3DSA:3.40.190.80 200 337 7.5E-60 T 14-10-2018 RY45_17065 ed49f5cf2eaa7c1b31b717a35d8ede50 254 ProSitePatterns PS00171 Triosephosphate isomerase active site. 166 176 - T 14-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17065 ed49f5cf2eaa7c1b31b717a35d8ede50 254 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 7 238 3.2E-61 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17065 ed49f5cf2eaa7c1b31b717a35d8ede50 254 Gene3D G3DSA:3.20.20.70 1 254 3.5E-90 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_17065 ed49f5cf2eaa7c1b31b717a35d8ede50 254 SUPERFAMILY SSF51351 4 250 1.14E-82 T 14-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17065 ed49f5cf2eaa7c1b31b717a35d8ede50 254 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 4 249 54.87 T 14-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17065 ed49f5cf2eaa7c1b31b717a35d8ede50 254 Pfam PF00121 Triosephosphate isomerase 7 247 2.5E-85 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_18650 a153e644063443f3d079846098f2689c 229 Pfam PF01618 MotA/TolQ/ExbB proton channel family 80 207 3.6E-44 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_18650 a153e644063443f3d079846098f2689c 229 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 5 225 42.812 T 14-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 RY45_18650 a153e644063443f3d079846098f2689c 229 TIGRFAM TIGR02796 tolQ: protein TolQ 6 220 2.0E-89 T 14-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 SUPERFAMILY SSF56176 9 198 1.14E-45 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 SUPERFAMILY SSF56194 205 342 3.4E-51 T 14-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 11 333 7.6E-94 T 14-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 345 89.675 T 14-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 209 331 5.3E-33 T 14-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 Gene3D G3DSA:3.90.78.10 222 344 2.3E-45 T 14-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 Pfam PF01565 FAD binding domain 26 152 1.9E-20 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 Gene3D G3DSA:3.30.465.10 73 221 3.7E-54 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_21110 15ff8384a5a6f84f440e7c0f71332d4e 345 Gene3D G3DSA:3.30.43.10 1 72 3.7E-18 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 193 270 3.1E-28 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 SUPERFAMILY SSF46689 4 55 8.96E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 Gene3D G3DSA:1.10.10.10 190 274 2.1E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_12705 e6dab0115578502ee3c0038fe622e465 275 Pfam PF12833 Helix-turn-helix domain 27 105 2.9E-18 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 SMART SM00342 21 103 4.1E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 Gene3D G3DSA:3.30.160.70 102 189 1.8E-13 T 14-10-2018 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 SUPERFAMILY SSF46767 190 271 1.7E-28 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 191 266 1.3E-29 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 241 247 - T 14-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 Gene3D G3DSA:1.10.10.60 2 57 4.9E-15 T 14-10-2018 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 SUPERFAMILY SSF46689 59 106 6.27E-5 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 SUPERFAMILY SSF53155 109 187 2.35E-15 T 14-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RY45_12705 e6dab0115578502ee3c0038fe622e465 275 Gene3D G3DSA:1.10.10.60 58 101 8.1E-6 T 14-10-2018 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 Gene3D G3DSA:1.10.220.30 205 338 4.9E-29 T 14-10-2018 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 Gene3D G3DSA:1.10.220.30 13 94 3.7E-17 T 14-10-2018 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 Pfam PF14841 FliG middle domain 126 198 2.4E-18 T 14-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 SUPERFAMILY SSF48029 15 109 9.68E-16 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 205 230 1.9E-31 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 44 70 1.9E-31 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 257 277 1.9E-31 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 281 307 1.9E-31 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 15 31 1.9E-31 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 124 147 1.9E-31 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 SUPERFAMILY SSF48029 125 333 2.22E-54 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 Pfam PF01706 FliG C-terminal domain 228 332 2.2E-26 T 14-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 Pfam PF14842 FliG N-terminal domain 17 110 1.0E-20 T 14-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RY45_20315 4388ad6794b9ab22cf75793e98faef7c 342 Gene3D G3DSA:1.10.220.30 100 203 1.1E-19 T 14-10-2018 RY45_02260 339d4be71b4b845386afc158f21abdb8 223 Pfam PF07963 Prokaryotic N-terminal methylation motif 17 42 1.1E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02260 339d4be71b4b845386afc158f21abdb8 223 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 20 40 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02260 339d4be71b4b845386afc158f21abdb8 223 SUPERFAMILY SSF54523 22 118 2.04E-13 T 14-10-2018 RY45_02260 339d4be71b4b845386afc158f21abdb8 223 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 20 42 4.8E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02260 339d4be71b4b845386afc158f21abdb8 223 Gene3D G3DSA:3.30.700.10 22 181 6.1E-13 T 14-10-2018 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 Gene3D G3DSA:3.40.50.261 124 288 2.7E-76 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 Gene3D G3DSA:3.40.50.720 1 123 4.9E-52 T 14-10-2018 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 PIRSF PIRSF001553 1 289 7.6E-135 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.6E-39 T 14-10-2018 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 2.6E-39 T 14-10-2018 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 2.6E-39 T 14-10-2018 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 2.6E-39 T 14-10-2018 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.242 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 14-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 5.1E-145 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 SUPERFAMILY SSF51735 1 122 1.55E-43 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 Pfam PF02629 CoA binding domain 6 99 7.8E-32 T 14-10-2018 IPR003781 CoA-binding GO:0048037 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 Pfam PF00549 CoA-ligase 151 270 1.5E-20 T 14-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 SMART SM00881 4 100 3.2E-37 T 14-10-2018 IPR003781 CoA-binding GO:0048037 RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 14-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site RY45_10350 b1790f25aff89202159fe9498c7b7cb8 290 SUPERFAMILY SSF52210 123 286 2.22E-57 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 Gene3D G3DSA:3.90.79.10 234 349 6.4E-12 T 14-10-2018 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 SUPERFAMILY SSF55811 223 347 2.51E-27 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 SMART SM00478 42 193 3.5E-47 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 38 171 6.9E-20 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 Pfam PF14815 NUDIX domain 238 347 8.2E-22 T 14-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 SUPERFAMILY SSF48150 7 228 6.12E-77 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 Pfam PF00633 Helix-hairpin-helix motif 103 130 4.1E-7 T 14-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 195 211 - T 14-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 Gene3D G3DSA:1.10.340.30 24 135 2.4E-87 T 14-10-2018 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 9 278 1.2E-117 T 14-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 195 211 3.2E-4 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 Gene3D G3DSA:1.10.1670.10 12 212 2.4E-87 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 ProSitePatterns PS01155 Endonuclease III family signature. 105 134 - T 14-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 RY45_19585 142547a5afaf5dc3ed8acc49159a75a8 353 SMART SM00525 194 214 0.0051 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 644 8.3E-273 T 14-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 Pfam PF08206 Ribonuclease B OB domain 24 77 1.1E-15 T 14-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 SUPERFAMILY SSF50249 8 80 3.67E-13 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 SMART SM00955 191 517 6.0E-119 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 SUPERFAMILY SSF50249 561 643 4.0E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 645 42.334 T 14-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 Gene3D G3DSA:2.40.50.140 1 81 3.0E-26 T 14-10-2018 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 14-10-2018 IPR022966 Ribonuclease II/R, conserved site RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 Pfam PF00575 S1 RNA binding domain 561 640 2.6E-4 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 SUPERFAMILY SSF50249 181 556 4.86E-109 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 SUPERFAMILY SSF50249 84 170 3.43E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 643 1.4E-187 T 14-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 Pfam PF00773 RNB domain 191 516 7.5E-82 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 Gene3D G3DSA:2.40.50.140 559 646 1.8E-26 T 14-10-2018 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 SMART SM00357 23 79 7.2E-8 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 RY45_03210 35599c02f8adbc4e0a6bc105f028baf5 673 Gene3D G3DSA:2.40.50.640 83 155 2.0E-25 T 14-10-2018 RY45_20725 c464ff00fb7fd19bbaac975167303289 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 233 1.1E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_20725 c464ff00fb7fd19bbaac975167303289 240 Pfam PF00072 Response regulator receiver domain 8 117 1.2E-32 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_20725 c464ff00fb7fd19bbaac975167303289 240 SMART SM00862 157 233 7.9E-25 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_20725 c464ff00fb7fd19bbaac975167303289 240 SMART SM00448 6 116 2.7E-47 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_20725 c464ff00fb7fd19bbaac975167303289 240 Gene3D G3DSA:1.10.10.10 134 239 2.6E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_20725 c464ff00fb7fd19bbaac975167303289 240 Gene3D G3DSA:3.40.50.2300 4 133 3.7E-41 T 14-10-2018 RY45_20725 c464ff00fb7fd19bbaac975167303289 240 SUPERFAMILY SSF46894 138 235 4.54E-25 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_20725 c464ff00fb7fd19bbaac975167303289 240 SUPERFAMILY SSF52172 3 131 1.01E-44 T 14-10-2018 IPR011006 CheY-like superfamily RY45_21190 c5a93897b35b0c137255c910044db4ac 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 7.3E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21190 c5a93897b35b0c137255c910044db4ac 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 202 216 7.3E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21190 c5a93897b35b0c137255c910044db4ac 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 422 7.3E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21190 c5a93897b35b0c137255c910044db4ac 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 465 7.4E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_21190 c5a93897b35b0c137255c910044db4ac 466 SUPERFAMILY SSF55874 305 465 5.24E-29 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_21190 c5a93897b35b0c137255c910044db4ac 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 312 1.8E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_21190 c5a93897b35b0c137255c910044db4ac 466 SMART SM00387 357 466 7.1E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_21190 c5a93897b35b0c137255c910044db4ac 466 SMART SM00388 246 314 1.3E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_21190 c5a93897b35b0c137255c910044db4ac 466 Gene3D G3DSA:3.30.565.10 313 466 2.8E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_21190 c5a93897b35b0c137255c910044db4ac 466 Gene3D G3DSA:1.10.287.130 236 312 1.9E-17 T 14-10-2018 RY45_21190 c5a93897b35b0c137255c910044db4ac 466 SUPERFAMILY SSF47384 231 313 7.26E-18 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_02535 886b423fedc67887284c7d20981e7931 410 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 295 398 1.9E-22 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RY45_02535 886b423fedc67887284c7d20981e7931 410 SMART SM00876 295 399 2.8E-31 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RY45_02535 886b423fedc67887284c7d20981e7931 410 Gene3D G3DSA:3.20.20.70 48 403 7.8E-101 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_02535 886b423fedc67887284c7d20981e7931 410 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 41 405 3.4E-157 T 14-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 RY45_02535 886b423fedc67887284c7d20981e7931 410 Pfam PF04055 Radical SAM superfamily 119 256 2.3E-7 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_02535 886b423fedc67887284c7d20981e7931 410 SUPERFAMILY SSF102114 75 370 9.55E-50 T 14-10-2018 RY45_12945 d39ad7b17d963654f96c72e875096bdc 285 PIRSF PIRSF015626 7 275 3.5E-76 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_12945 d39ad7b17d963654f96c72e875096bdc 285 SUPERFAMILY SSF53927 19 271 5.41E-74 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_12945 d39ad7b17d963654f96c72e875096bdc 285 Gene3D G3DSA:3.40.140.10 127 279 4.2E-45 T 14-10-2018 RY45_12945 d39ad7b17d963654f96c72e875096bdc 285 Pfam PF02634 FdhD/NarQ family 37 271 6.4E-72 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_12945 d39ad7b17d963654f96c72e875096bdc 285 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 37 271 3.9E-71 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_12945 d39ad7b17d963654f96c72e875096bdc 285 Gene3D G3DSA:3.10.20.10 38 123 1.4E-8 T 14-10-2018 RY45_12945 d39ad7b17d963654f96c72e875096bdc 285 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 11 272 32.401 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 14-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 ProSitePatterns PS00761 Signal peptidases I signature 3. 245 258 - T 14-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 SUPERFAMILY SSF51306 78 305 1.78E-73 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 Gene3D G3DSA:2.10.109.10 78 280 2.6E-77 T 14-10-2018 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 67 280 1.4E-47 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 14-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 Pfam PF00717 Peptidase S24-like 86 166 3.6E-21 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 Gene3D G3DSA:2.170.230.10 155 239 2.6E-77 T 14-10-2018 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 1.3E-26 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 1.3E-26 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 240 259 1.3E-26 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RY45_04495 37df26809bd2d92466d1704d5ac7a066 307 Pfam PF10502 Signal peptidase, peptidase S26 237 277 1.7E-6 T 14-10-2018 IPR019533 Peptidase S26 RY45_07140 e873c965928f0c47233d524c21672346 1020 SUPERFAMILY SSF82693 40 133 7.32E-21 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 Gene3D G3DSA:1.20.1640.10 501 1003 5.8E-246 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 Pfam PF00873 AcrB/AcrD/AcrF family 4 1005 1.7E-187 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_07140 e873c965928f0c47233d524c21672346 1020 Gene3D G3DSA:3.30.70.1440 647 846 5.8E-246 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.4E-41 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_07140 e873c965928f0c47233d524c21672346 1020 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.4E-41 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_07140 e873c965928f0c47233d524c21672346 1020 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.4E-41 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_07140 e873c965928f0c47233d524c21672346 1020 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.4E-41 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_07140 e873c965928f0c47233d524c21672346 1020 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.4E-41 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_07140 e873c965928f0c47233d524c21672346 1020 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.4E-41 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_07140 e873c965928f0c47233d524c21672346 1020 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.4E-41 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_07140 e873c965928f0c47233d524c21672346 1020 SUPERFAMILY SSF82693 147 324 1.78E-9 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 Gene3D G3DSA:3.30.2090.10 181 269 5.8E-246 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_07140 e873c965928f0c47233d524c21672346 1020 Gene3D G3DSA:3.30.2090.10 698 784 5.8E-246 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_07140 e873c965928f0c47233d524c21672346 1020 SUPERFAMILY SSF82714 183 262 7.72E-7 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_07140 e873c965928f0c47233d524c21672346 1020 Gene3D G3DSA:3.30.70.1430 553 646 5.8E-246 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 Gene3D G3DSA:3.30.70.1430 40 792 5.8E-246 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 Gene3D G3DSA:1.20.1640.10 10 500 5.8E-246 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 SUPERFAMILY SSF82866 779 1009 4.84E-43 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 SUPERFAMILY SSF82714 697 781 3.53E-6 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_07140 e873c965928f0c47233d524c21672346 1020 SUPERFAMILY SSF82866 288 490 1.44E-36 T 14-10-2018 RY45_07140 e873c965928f0c47233d524c21672346 1020 Gene3D G3DSA:3.30.70.1320 133 324 5.8E-246 T 14-10-2018 RY45_17480 0bd7d914ce633d00a50cb1b4e3ba00d8 123 Pfam PF07977 FabA-like domain 31 95 7.5E-5 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_17480 0bd7d914ce633d00a50cb1b4e3ba00d8 123 SUPERFAMILY SSF54637 27 119 2.9E-16 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_17480 0bd7d914ce633d00a50cb1b4e3ba00d8 123 PIRSF PIRSF030962 8 123 1.9E-30 T 14-10-2018 IPR016962 Dehydrase, ECs4332, predicted KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_17480 0bd7d914ce633d00a50cb1b4e3ba00d8 123 Gene3D G3DSA:3.10.129.10 13 123 1.0E-34 T 14-10-2018 RY45_01815 502282643e6decd800eff40782038312 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 27.278 T 14-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RY45_01815 502282643e6decd800eff40782038312 157 Gene3D G3DSA:3.10.50.30 77 157 7.8E-33 T 14-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RY45_01815 502282643e6decd800eff40782038312 157 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 52.566 T 14-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 RY45_01815 502282643e6decd800eff40782038312 157 PIRSF PIRSF006092 1 157 1.9E-44 T 14-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RY45_01815 502282643e6decd800eff40782038312 157 Gene3D G3DSA:1.10.287.180 1 76 8.2E-31 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RY45_01815 502282643e6decd800eff40782038312 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RY45_01815 502282643e6decd800eff40782038312 157 SUPERFAMILY SSF46557 3 78 1.57E-26 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RY45_01815 502282643e6decd800eff40782038312 157 SUPERFAMILY SSF54534 80 155 7.98E-20 T 14-10-2018 RY45_01815 502282643e6decd800eff40782038312 157 Pfam PF03449 Transcription elongation factor, N-terminal 5 72 3.3E-25 T 14-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RY45_01815 502282643e6decd800eff40782038312 157 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 2 157 4.1E-80 T 14-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 RY45_01815 502282643e6decd800eff40782038312 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 2.4E-21 T 14-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RY45_18330 5382b869a2a722773d48d6e4ecb9f2b7 302 SUPERFAMILY SSF52402 6 210 1.42E-75 T 14-10-2018 RY45_18330 5382b869a2a722773d48d6e4ecb9f2b7 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 2.0E-65 T 14-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RY45_18330 5382b869a2a722773d48d6e4ecb9f2b7 302 PIRSF PIRSF002936 1 302 5.5E-156 T 14-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RY45_18330 5382b869a2a722773d48d6e4ecb9f2b7 302 Gene3D G3DSA:3.40.50.620 7 212 2.1E-67 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_18330 5382b869a2a722773d48d6e4ecb9f2b7 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 58.037 T 14-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RY45_18330 5382b869a2a722773d48d6e4ecb9f2b7 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 5.6E-162 T 14-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 Hamap MF_00550 Peptidase T [pepT]. 1 402 52.812 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 Pfam PF01546 Peptidase family M20/M25/M40 137 400 1.5E-13 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 SUPERFAMILY SSF55031 207 317 2.35E-36 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 Gene3D G3DSA:3.30.70.360 207 317 2.0E-165 T 14-10-2018 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 Gene3D G3DSA:3.40.630.10 4 398 2.0E-165 T 14-10-2018 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 PIRSF PIRSF037215 1 405 1.0E-174 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 403 1.1E-154 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 Pfam PF07687 Peptidase dimerisation domain 204 301 1.1E-8 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 72 81 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 SUPERFAMILY SSF53187 1 400 2.09E-77 T 14-10-2018 RY45_08845 fe388cacbbd402ba934a489c4dc14598 407 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 136 175 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RY45_21480 f8e2578c98fe46fdcb5f46c8c675c47f 270 Gene3D G3DSA:1.20.1080.10 1 258 8.3E-91 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RY45_21480 f8e2578c98fe46fdcb5f46c8c675c47f 270 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site RY45_21480 f8e2578c98fe46fdcb5f46c8c675c47f 270 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 156 166 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site RY45_21480 f8e2578c98fe46fdcb5f46c8c675c47f 270 Pfam PF01226 Formate/nitrite transporter 26 246 2.6E-61 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 RY45_21480 f8e2578c98fe46fdcb5f46c8c675c47f 270 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 21 249 3.9E-80 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 SUPERFAMILY SSF52833 103 195 1.46E-21 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 347 371 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 310 318 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 438 459 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 212 234 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 399 415 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 332 344 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 244 259 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 264 274 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 473 491 1.9E-63 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 Gene3D G3DSA:3.40.30.80 1 198 3.9E-60 T 14-10-2018 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 Pfam PF13192 Thioredoxin domain 123 193 1.7E-9 T 14-10-2018 IPR012336 Thioredoxin-like fold RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 351 369 8.1E-39 T 14-10-2018 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 436 452 8.1E-39 T 14-10-2018 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 213 232 8.1E-39 T 14-10-2018 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 309 327 8.1E-39 T 14-10-2018 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 463 485 8.1E-39 T 14-10-2018 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 SUPERFAMILY SSF52833 1 99 5.7E-25 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 PIRSF PIRSF000238 1 516 1.1E-255 T 14-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 211 485 3.4E-46 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 Gene3D G3DSA:3.50.50.60 321 444 1.7E-107 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 339 359 - T 14-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 SUPERFAMILY SSF51905 197 509 1.51E-51 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 513 2.0E-243 T 14-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 RY45_09450 9e474e77eb00d657b20a7961dcadb4a0 526 Gene3D G3DSA:3.50.50.60 211 503 1.7E-107 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_20530 81e1d104f0b6ea407b5608b702bd3b70 186 Gene3D G3DSA:2.60.450.10 59 186 3.5E-35 T 14-10-2018 RY45_20530 81e1d104f0b6ea407b5608b702bd3b70 186 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 2 184 23.727 T 14-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 RY45_20530 81e1d104f0b6ea407b5608b702bd3b70 186 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 10 178 5.0E-37 T 14-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related RY45_20530 81e1d104f0b6ea407b5608b702bd3b70 186 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 5 181 6.6E-48 T 14-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 RY45_20530 81e1d104f0b6ea407b5608b702bd3b70 186 PIRSF PIRSF028513 1 185 8.1E-37 T 14-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.2E-15 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 6.0E-58 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.2E-33 T 14-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RY45_21085 2876446518c390524b35abc3a2ba10d6 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site RY45_21085 2876446518c390524b35abc3a2ba10d6 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.1E-17 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 SUPERFAMILY SSF50465 298 393 6.04E-36 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RY45_21085 2876446518c390524b35abc3a2ba10d6 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 SUPERFAMILY SSF50447 205 301 3.93E-30 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_21085 2876446518c390524b35abc3a2ba10d6 394 SUPERFAMILY SSF52540 6 219 2.13E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21085 2876446518c390524b35abc3a2ba10d6 394 Gene3D G3DSA:2.40.30.10 206 334 4.1E-53 T 14-10-2018 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 Gene3D G3DSA:2.40.30.10 338 393 5.2E-29 T 14-10-2018 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.802 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 Gene3D G3DSA:3.40.50.300 1 203 1.2E-70 T 14-10-2018 RY45_21085 2876446518c390524b35abc3a2ba10d6 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 1.4E-236 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RY45_19620 b66415550891b069fc04c3750668092e 190 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 28 183 3.6E-39 T 14-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component RY45_19620 b66415550891b069fc04c3750668092e 190 Gene3D G3DSA:3.40.50.10610 17 189 2.0E-11 T 14-10-2018 RY45_19620 b66415550891b069fc04c3750668092e 190 SUPERFAMILY SSF159594 26 188 2.41E-26 T 14-10-2018 RY45_13335 344a3ec71aaad31d7aaa6147a1798404 210 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 39 201 38.646 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RY45_13335 344a3ec71aaad31d7aaa6147a1798404 210 Gene3D G3DSA:3.30.1060.10 1 210 3.1E-90 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RY45_13335 344a3ec71aaad31d7aaa6147a1798404 210 Pfam PF01625 Peptide methionine sulfoxide reductase 42 195 2.9E-66 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RY45_13335 344a3ec71aaad31d7aaa6147a1798404 210 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 42 195 3.7E-67 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RY45_13335 344a3ec71aaad31d7aaa6147a1798404 210 SUPERFAMILY SSF55068 4 204 1.28E-81 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RY45_16175 3f27db9540647b1fee4aed37795a97db 306 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 37 166 4.1E-61 T 14-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RY45_16175 3f27db9540647b1fee4aed37795a97db 306 Gene3D G3DSA:1.10.8.300 196 298 4.5E-18 T 14-10-2018 RY45_16175 3f27db9540647b1fee4aed37795a97db 306 PIRSF PIRSF002849 1 303 1.4E-109 T 14-10-2018 RY45_16175 3f27db9540647b1fee4aed37795a97db 306 SUPERFAMILY SSF52540 5 278 2.98E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16175 3f27db9540647b1fee4aed37795a97db 306 Gene3D G3DSA:3.40.50.300 18 184 2.2E-43 T 14-10-2018 RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 Pfam PF11104 Type IV pilus assembly protein PilM; 15 347 6.8E-97 T 14-10-2018 IPR005883 Type IV pilus assembly protein PilM RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 SUPERFAMILY SSF53067 188 347 8.64E-22 T 14-10-2018 RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 SMART SM00842 13 179 5.2E-4 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 SUPERFAMILY SSF53067 75 175 1.81E-7 T 14-10-2018 RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 Gene3D G3DSA:3.30.1490.300 89 147 1.1E-71 T 14-10-2018 RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 Gene3D G3DSA:3.30.420.40 188 315 1.1E-71 T 14-10-2018 RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 14 347 4.2E-80 T 14-10-2018 IPR005883 Type IV pilus assembly protein PilM RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 PIRSF PIRSF019169 4 348 8.9E-92 T 14-10-2018 IPR005883 Type IV pilus assembly protein PilM RY45_16475 bb8fd2e0884a01b4fe2cf4253bf3c98f 352 Gene3D G3DSA:3.30.420.40 15 345 1.1E-71 T 14-10-2018 RY45_04575 d8f5695c456380434a232708e54bc70f 159 Pfam PF07308 Protein of unknown function (DUF1456) 92 159 8.6E-25 T 14-10-2018 IPR009921 Domain of unknown function DUF1456 RY45_04575 d8f5695c456380434a232708e54bc70f 159 Pfam PF07308 Protein of unknown function (DUF1456) 3 76 2.6E-28 T 14-10-2018 IPR009921 Domain of unknown function DUF1456 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 Pfam PF01479 S4 domain 33 79 3.0E-10 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 SUPERFAMILY SSF55120 106 324 6.56E-66 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 Pfam PF00849 RNA pseudouridylate synthase 114 262 4.1E-33 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 SMART SM00363 33 92 3.9E-9 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 152 166 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 SUPERFAMILY SSF55174 32 83 5.15E-9 T 14-10-2018 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 Gene3D G3DSA:3.30.2350.10 105 327 4.1E-85 T 14-10-2018 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 29 325 2.1E-95 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_11660 7e1394a72287be8350c357b7b65edc56 327 Gene3D G3DSA:3.10.290.10 19 85 5.1E-17 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_10485 79c0721d0ef8e87ca7186b535afbbfa9 373 Gene3D G3DSA:3.40.50.2000 45 189 8.3E-11 T 14-10-2018 RY45_10485 79c0721d0ef8e87ca7186b535afbbfa9 373 SUPERFAMILY SSF53756 44 330 3.14E-38 T 14-10-2018 RY45_10485 79c0721d0ef8e87ca7186b535afbbfa9 373 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 270 325 6.3E-11 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 RY45_10485 79c0721d0ef8e87ca7186b535afbbfa9 373 Gene3D G3DSA:3.40.50.2000 203 341 1.9E-16 T 14-10-2018 RY45_00885 94971dd10798e84ebd0ac9cf5fbd448c 405 Pfam PF12801 4Fe-4S binding domain 252 286 5.3E-4 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_00885 94971dd10798e84ebd0ac9cf5fbd448c 405 Pfam PF12801 4Fe-4S binding domain 145 186 5.0E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_00885 94971dd10798e84ebd0ac9cf5fbd448c 405 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 331 342 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_00885 94971dd10798e84ebd0ac9cf5fbd448c 405 SUPERFAMILY SSF54862 155 348 1.14E-16 T 14-10-2018 RY45_20410 00eef08b260a0566bb27c16ad98e28b8 405 Gene3D G3DSA:1.20.810.10 2 405 1.7E-152 T 14-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 RY45_20410 00eef08b260a0566bb27c16ad98e28b8 405 Pfam PF00033 Cytochrome b/b6/petB 25 212 2.8E-67 T 14-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RY45_20410 00eef08b260a0566bb27c16ad98e28b8 405 SUPERFAMILY SSF81648 201 371 2.49E-47 T 14-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RY45_20410 00eef08b260a0566bb27c16ad98e28b8 405 PIRSF PIRSF038885 1 405 6.6E-158 T 14-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 RY45_20410 00eef08b260a0566bb27c16ad98e28b8 405 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 279 380 1.2E-41 T 14-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RY45_20410 00eef08b260a0566bb27c16ad98e28b8 405 SUPERFAMILY SSF81342 8 269 1.22E-95 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 560 58.961 T 14-10-2018 IPR023017 Transport protein YbjL, putative RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 Pfam PF06826 Predicted Permease Membrane Region 389 556 8.5E-37 T 14-10-2018 IPR006512 YidE/YbjL duplication RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 Pfam PF06826 Predicted Permease Membrane Region 17 184 1.7E-35 T 14-10-2018 IPR006512 YidE/YbjL duplication RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 SUPERFAMILY SSF116726 294 377 2.22E-11 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 Gene3D G3DSA:3.30.70.1450 301 375 3.9E-5 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 Gene3D G3DSA:3.30.70.1450 220 288 7.2E-10 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 393 543 2.0E-34 T 14-10-2018 IPR006512 YidE/YbjL duplication RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 22 171 2.1E-27 T 14-10-2018 IPR006512 YidE/YbjL duplication RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 SUPERFAMILY SSF116726 230 285 3.01E-10 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 Pfam PF02080 TrkA-C domain 232 281 2.2E-9 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_10630 70d92011ce8ac90166ffa85cea6a0b8b 561 Pfam PF02080 TrkA-C domain 309 375 4.7E-9 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_18075 7c4c9d3d29f242705c606b28ef89f048 116 Pfam PF01521 Iron-sulphur cluster biosynthesis 11 111 3.1E-21 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RY45_18075 7c4c9d3d29f242705c606b28ef89f048 116 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 116 36.881 T 14-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 RY45_18075 7c4c9d3d29f242705c606b28ef89f048 116 SUPERFAMILY SSF89360 10 105 3.34E-31 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RY45_18075 7c4c9d3d29f242705c606b28ef89f048 116 Gene3D G3DSA:2.60.300.12 10 116 1.1E-35 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RY45_18075 7c4c9d3d29f242705c606b28ef89f048 116 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 97 114 - T 14-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 RY45_18075 7c4c9d3d29f242705c606b28ef89f048 116 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 11 115 3.5E-40 T 14-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 RY45_17290 db86c338b06ba6f48d691843117b773b 292 PIRSF PIRSF000401 1 292 1.7E-92 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RY45_17290 db86c338b06ba6f48d691843117b773b 292 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 290 32.444 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RY45_17290 db86c338b06ba6f48d691843117b773b 292 SUPERFAMILY SSF53335 54 273 6.37E-44 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_17290 db86c338b06ba6f48d691843117b773b 292 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 290 3.7E-97 T 14-10-2018 RY45_17290 db86c338b06ba6f48d691843117b773b 292 Gene3D G3DSA:3.40.50.150 99 291 6.2E-58 T 14-10-2018 RY45_17290 db86c338b06ba6f48d691843117b773b 292 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 284 9.6E-101 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RY45_07375 f1bbeeb4d8c8a051242b7893e0d5b73f 424 Pfam PF14559 Tetratricopeptide repeat 177 238 3.8E-6 T 14-10-2018 RY45_07375 f1bbeeb4d8c8a051242b7893e0d5b73f 424 SUPERFAMILY SSF48452 154 258 4.93E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_07375 f1bbeeb4d8c8a051242b7893e0d5b73f 424 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 3 113 5.6E-26 T 14-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI RY45_07375 f1bbeeb4d8c8a051242b7893e0d5b73f 424 Gene3D G3DSA:1.25.40.10 151 290 2.1E-17 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09365 a685a7565908c040d75512e816ac9166 110 SUPERFAMILY SSF102829 6 94 1.09E-24 T 14-10-2018 IPR036192 Cell division protein ZapA-like superfamily RY45_09365 a685a7565908c040d75512e816ac9166 110 Pfam PF05164 Cell division protein ZapA 6 90 4.1E-21 T 14-10-2018 IPR007838 Cell division protein ZapA-like RY45_09365 a685a7565908c040d75512e816ac9166 110 Gene3D G3DSA:1.20.5.50 49 103 1.2E-9 T 14-10-2018 RY45_09365 a685a7565908c040d75512e816ac9166 110 Gene3D G3DSA:1.10.20.30 1 47 1.5E-16 T 14-10-2018 RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 Gene3D G3DSA:3.30.70.270 222 393 8.3E-20 T 14-10-2018 RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 Gene3D G3DSA:3.20.20.450 407 639 9.4E-42 T 14-10-2018 IPR035919 EAL domain superfamily RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 Pfam PF00563 EAL domain 411 634 2.4E-42 T 14-10-2018 IPR001633 EAL domain RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 Pfam PF16448 LapD/MoxY periplasmic domain 24 146 8.7E-41 T 14-10-2018 IPR032244 LapD/MoxY, periplasmic domain RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 Gene3D G3DSA:3.30.1040.50 102 150 1.5E-13 T 14-10-2018 RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 SMART SM00052 403 641 1.4E-11 T 14-10-2018 IPR001633 EAL domain RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 Pfam PF00990 Diguanylate cyclase, GGDEF domain 238 388 1.4E-11 T 14-10-2018 IPR000160 GGDEF domain RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 SUPERFAMILY SSF141868 410 634 5.75E-42 T 14-10-2018 IPR035919 EAL domain superfamily RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 SUPERFAMILY SSF55073 243 393 8.63E-16 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_14185 0cd6675404de2c20ec4c8ee725e737eb 641 SMART SM00267 226 394 2.0E-7 T 14-10-2018 IPR000160 GGDEF domain RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 179 315 1.1E-34 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 SUPERFAMILY SSF53218 179 323 3.66E-44 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 SMART SM00852 182 319 8.7E-45 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 Gene3D G3DSA:3.90.105.10 28 176 8.1E-150 T 14-10-2018 RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 Gene3D G3DSA:3.40.980.10 177 328 8.1E-150 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 SUPERFAMILY SSF63867 328 407 1.15E-22 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 Gene3D G3DSA:2.170.190.11 52 143 8.1E-150 T 14-10-2018 RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 10 169 1.5E-47 T 14-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 Gene3D G3DSA:2.40.340.10 329 398 8.1E-150 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 SUPERFAMILY SSF63882 8 177 3.79E-57 T 14-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 Pfam PF03454 MoeA C-terminal region (domain IV) 333 403 2.3E-20 T 14-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 Pfam PF00994 Probable molybdopterin binding domain 182 318 2.4E-28 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_08790 61909e48137f02fe4321138df8c6d2e1 408 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 255 288 - T 14-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 SUPERFAMILY SSF118215 12 401 1.96E-109 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 Gene3D G3DSA:1.10.3860.10 2 412 9.4E-121 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 227 246 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 355 375 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 144 166 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 45 65 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 75 100 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 3.4E-53 T 14-10-2018 RY45_12135 dfcbcfb5cf44ece2a3e4778f73511e5c 412 Pfam PF00375 Sodium:dicarboxylate symporter family 12 400 1.2E-115 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RY45_12915 e14ff17c39d43968e5221ac861272661 434 SUPERFAMILY SSF53613 36 417 1.49E-44 T 14-10-2018 IPR029056 Ribokinase-like RY45_12915 e14ff17c39d43968e5221ac861272661 434 Pfam PF00294 pfkB family carbohydrate kinase 72 294 1.9E-9 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 374 42.119 T 14-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 SUPERFAMILY SSF46565 1 110 2.22E-36 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 SMART SM00271 4 62 4.3E-31 T 14-10-2018 IPR001623 DnaJ domain RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 Gene3D G3DSA:1.10.287.110 1 114 2.1E-36 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 SUPERFAMILY SSF57938 135 212 6.8E-23 T 14-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 SUPERFAMILY SSF49493 114 261 2.09E-20 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 PRINTS PR00625 DnaJ domain signature 62 81 1.1E-30 T 14-10-2018 IPR001623 DnaJ domain RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 PRINTS PR00625 DnaJ domain signature 7 25 1.1E-30 T 14-10-2018 IPR001623 DnaJ domain RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 PRINTS PR00625 DnaJ domain signature 42 62 1.1E-30 T 14-10-2018 IPR001623 DnaJ domain RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 PRINTS PR00625 DnaJ domain signature 25 40 1.1E-30 T 14-10-2018 IPR001623 DnaJ domain RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 Gene3D G3DSA:2.60.260.20 256 365 2.2E-28 T 14-10-2018 RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 350 3.3E-140 T 14-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 Gene3D G3DSA:2.10.230.10 140 210 2.2E-26 T 14-10-2018 RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 Pfam PF00684 DnaJ central domain 148 208 2.0E-15 T 14-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 Pfam PF00226 DnaJ domain 5 67 8.1E-28 T 14-10-2018 IPR001623 DnaJ domain RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 14-10-2018 IPR018253 DnaJ domain, conserved site RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 SUPERFAMILY SSF49493 260 345 7.98E-22 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RY45_15370 42a0ab0ec32668a2fc4e345b88513b4a 380 Pfam PF01556 DnaJ C terminal domain 122 334 7.6E-46 T 14-10-2018 IPR002939 Chaperone DnaJ, C-terminal RY45_12615 7871d8631c56a5d245ee449d15588055 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 15 205 8.4E-107 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RY45_12615 7871d8631c56a5d245ee449d15588055 207 SUPERFAMILY SSF52096 24 205 4.97E-73 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_12615 7871d8631c56a5d245ee449d15588055 207 Pfam PF00574 Clp protease 26 205 1.9E-87 T 14-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RY45_12615 7871d8631c56a5d245ee449d15588055 207 Gene3D G3DSA:3.90.226.10 4 207 6.5E-83 T 14-10-2018 RY45_12615 7871d8631c56a5d245ee449d15588055 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 2.9E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RY45_12615 7871d8631c56a5d245ee449d15588055 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 2.9E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RY45_12615 7871d8631c56a5d245ee449d15588055 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 2.9E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RY45_12615 7871d8631c56a5d245ee449d15588055 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 2.9E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RY45_12615 7871d8631c56a5d245ee449d15588055 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 2.9E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RY45_12615 7871d8631c56a5d245ee449d15588055 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 14-10-2018 IPR033135 ClpP, histidine active site RY45_12615 7871d8631c56a5d245ee449d15588055 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 43.241 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RY45_12615 7871d8631c56a5d245ee449d15588055 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 14-10-2018 IPR018215 ClpP, Ser active site RY45_14095 6be342b876f9c2bc892b209dfa278329 240 SMART SM00014 85 233 5.9E-25 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_14095 6be342b876f9c2bc892b209dfa278329 240 Pfam PF01569 PAP2 superfamily 89 238 2.2E-23 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_14095 6be342b876f9c2bc892b209dfa278329 240 SUPERFAMILY SSF48317 19 237 6.54E-28 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RY45_14095 6be342b876f9c2bc892b209dfa278329 240 Gene3D G3DSA:1.20.144.10 6 240 2.2E-50 T 14-10-2018 RY45_18445 7946b2722188015c07ca9702f568cedc 198 Pfam PF01810 LysE type translocator 19 190 3.3E-14 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_05780 63aa1b266238dd6c2c8b3083859abbdc 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 374 5.5E-114 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RY45_05780 63aa1b266238dd6c2c8b3083859abbdc 383 Gene3D G3DSA:1.20.1090.10 186 383 7.1E-66 T 14-10-2018 RY45_05780 63aa1b266238dd6c2c8b3083859abbdc 383 SUPERFAMILY SSF56796 5 382 9.81E-118 T 14-10-2018 RY45_05780 63aa1b266238dd6c2c8b3083859abbdc 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_05780 63aa1b266238dd6c2c8b3083859abbdc 383 Gene3D G3DSA:3.40.50.1970 1 184 1.7E-50 T 14-10-2018 RY45_05780 63aa1b266238dd6c2c8b3083859abbdc 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 260 280 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_08235 a617c239d698284c48ae2d310663d39c 302 Gene3D G3DSA:3.40.190.10 165 266 6.9E-54 T 14-10-2018 RY45_08235 a617c239d698284c48ae2d310663d39c 302 Gene3D G3DSA:1.10.10.10 2 88 5.0E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_08235 a617c239d698284c48ae2d310663d39c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 3.5E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_08235 a617c239d698284c48ae2d310663d39c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 3.5E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_08235 a617c239d698284c48ae2d310663d39c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 3.5E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_08235 a617c239d698284c48ae2d310663d39c 302 Pfam PF03466 LysR substrate binding domain 94 294 6.1E-37 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_08235 a617c239d698284c48ae2d310663d39c 302 Gene3D G3DSA:3.40.190.10 95 294 6.9E-54 T 14-10-2018 RY45_08235 a617c239d698284c48ae2d310663d39c 302 SUPERFAMILY SSF46785 4 114 3.41E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08235 a617c239d698284c48ae2d310663d39c 302 SUPERFAMILY SSF53850 94 299 1.86E-35 T 14-10-2018 RY45_08235 a617c239d698284c48ae2d310663d39c 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 3.7E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04395 7ac8cd152662f85e356c85cad3164fce 309 Gene3D G3DSA:3.30.420.40 9 296 4.4E-83 T 14-10-2018 RY45_04395 7ac8cd152662f85e356c85cad3164fce 309 ProSitePatterns PS01125 ROK family signature. 140 167 - T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RY45_04395 7ac8cd152662f85e356c85cad3164fce 309 Pfam PF00480 ROK family 9 300 3.1E-73 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RY45_04395 7ac8cd152662f85e356c85cad3164fce 309 Gene3D G3DSA:3.30.420.40 128 283 4.4E-83 T 14-10-2018 RY45_04395 7ac8cd152662f85e356c85cad3164fce 309 SUPERFAMILY SSF53067 9 304 7.78E-63 T 14-10-2018 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 106 185 3.8E-10 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 8 221 34.349 T 14-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 190 3.4E-11 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 Gene3D G3DSA:3.40.50.1000 11 213 5.3E-64 T 14-10-2018 IPR023214 HAD superfamily RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 Gene3D G3DSA:1.10.150.240 23 90 5.3E-64 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 11 220 4.9E-67 T 14-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 190 3.7E-35 T 14-10-2018 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.2E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 1.2E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 8 19 1.2E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 1.2E-6 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_16425 02913023d82fbe4576363b0aaeb0bab4 222 SUPERFAMILY SSF56784 7 221 1.15E-61 T 14-10-2018 IPR036412 HAD-like superfamily RY45_10780 1fbc5e2a3b10bb6afc3bd73375ad246b 116 Pfam PF09361 Phasin protein 8 106 7.1E-14 T 14-10-2018 IPR018968 Phasin RY45_10780 1fbc5e2a3b10bb6afc3bd73375ad246b 116 TIGRFAM TIGR02809 phasin_3: phasin family protein 4 113 4.1E-56 T 14-10-2018 IPR014176 Phasin, subfamily 3 RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 Pfam PF03023 MviN-like protein 30 479 8.7E-142 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 5 476 19.206 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 4 510 6.2E-132 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 PRINTS PR01806 Virulence factor MviN signature 142 166 3.2E-73 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 PRINTS PR01806 Virulence factor MviN signature 366 385 3.2E-73 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 PRINTS PR01806 Virulence factor MviN signature 54 70 3.2E-73 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 PRINTS PR01806 Virulence factor MviN signature 268 294 3.2E-73 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 PRINTS PR01806 Virulence factor MviN signature 35 54 3.2E-73 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 PRINTS PR01806 Virulence factor MviN signature 418 435 3.2E-73 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 PRINTS PR01806 Virulence factor MviN signature 166 187 3.2E-73 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_03860 916effe1bc29dde1086db3c09c0e7179 521 PIRSF PIRSF002869 1 517 1.2E-151 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RY45_10070 57b78f4e2fdc306bdda2038ff5d4002c 332 SUPERFAMILY SSF52540 3 269 4.42E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10070 57b78f4e2fdc306bdda2038ff5d4002c 332 SMART SM00382 32 235 3.0E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10070 57b78f4e2fdc306bdda2038ff5d4002c 332 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 1.0E-16 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_10070 57b78f4e2fdc306bdda2038ff5d4002c 332 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 323 2.4E-22 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_10070 57b78f4e2fdc306bdda2038ff5d4002c 332 Gene3D G3DSA:3.40.50.300 2 331 3.9E-75 T 14-10-2018 RY45_10070 57b78f4e2fdc306bdda2038ff5d4002c 332 Pfam PF00005 ABC transporter 24 187 8.0E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_10435 7a2bc80dcf28bd54429ba2868ecd8889 387 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 384 5.9E-135 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_10435 7a2bc80dcf28bd54429ba2868ecd8889 387 PIRSF PIRSF001434 1 387 4.0E-136 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_10435 7a2bc80dcf28bd54429ba2868ecd8889 387 Gene3D G3DSA:3.40.640.10 1 250 8.7E-85 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_10435 7a2bc80dcf28bd54429ba2868ecd8889 387 SUPERFAMILY SSF53383 22 384 2.55E-114 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_10435 7a2bc80dcf28bd54429ba2868ecd8889 387 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 194 208 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_10435 7a2bc80dcf28bd54429ba2868ecd8889 387 Gene3D G3DSA:3.90.1150.10 253 387 5.0E-51 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_08590 e86356e3094a17c46c5136b5d2e95241 233 Gene3D G3DSA:1.10.8.60 167 233 4.7E-26 T 14-10-2018 RY45_08590 e86356e3094a17c46c5136b5d2e95241 233 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 131 158 8.4E-5 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_08590 e86356e3094a17c46c5136b5d2e95241 233 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 43 63 8.4E-5 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RY45_08590 e86356e3094a17c46c5136b5d2e95241 233 SUPERFAMILY SSF52540 22 211 4.75E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08590 e86356e3094a17c46c5136b5d2e95241 233 Pfam PF00308 Bacterial dnaA protein 18 212 7.9E-14 T 14-10-2018 IPR013317 Chromosomal replication initiator protein DnaA RY45_08590 e86356e3094a17c46c5136b5d2e95241 233 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 6 232 1.2E-87 T 14-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 RY45_08590 e86356e3094a17c46c5136b5d2e95241 233 Gene3D G3DSA:3.40.50.300 1 163 1.3E-33 T 14-10-2018 RY45_20800 f03e8088cb8b041f542f5d6358fb2c84 304 Gene3D G3DSA:3.40.190.290 102 291 2.1E-13 T 14-10-2018 RY45_20800 f03e8088cb8b041f542f5d6358fb2c84 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 3.1E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_20800 f03e8088cb8b041f542f5d6358fb2c84 304 SUPERFAMILY SSF53850 99 298 2.53E-24 T 14-10-2018 RY45_20800 f03e8088cb8b041f542f5d6358fb2c84 304 Gene3D G3DSA:1.10.10.10 10 97 4.8E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_20800 f03e8088cb8b041f542f5d6358fb2c84 304 SUPERFAMILY SSF46785 5 107 9.13E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_20800 f03e8088cb8b041f542f5d6358fb2c84 304 Pfam PF03466 LysR substrate binding domain 102 293 2.3E-21 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_17320 699c28af189d85808d309d5d90b412ac 185 Gene3D G3DSA:3.90.79.10 20 158 1.5E-23 T 14-10-2018 RY45_17320 699c28af189d85808d309d5d90b412ac 185 ProSitePatterns PS00893 Nudix box signature. 62 83 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_17320 699c28af189d85808d309d5d90b412ac 185 Pfam PF00293 NUDIX domain 33 153 1.4E-11 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_17320 699c28af189d85808d309d5d90b412ac 185 SUPERFAMILY SSF55811 19 153 3.25E-21 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 41.403 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 SUPERFAMILY SSF51658 1 279 3.27E-99 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 276 8.1E-101 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 Gene3D G3DSA:3.20.20.150 1 280 8.4E-109 T 14-10-2018 RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 Pfam PF01261 Xylose isomerase-like TIM barrel 19 238 5.8E-38 T 14-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RY45_12340 ff965a903f34b7dc230dc2adc90d1b14 281 SMART SM00518 3 279 1.0E-114 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 RY45_17385 326e36e74d4dab27ecbffc405b441a2b 332 Gene3D G3DSA:3.40.190.100 119 256 1.5E-126 T 14-10-2018 RY45_17385 326e36e74d4dab27ecbffc405b441a2b 332 SUPERFAMILY SSF53850 30 331 2.2E-83 T 14-10-2018 RY45_17385 326e36e74d4dab27ecbffc405b441a2b 332 Gene3D G3DSA:3.40.190.10 31 328 1.5E-126 T 14-10-2018 RY45_17385 326e36e74d4dab27ecbffc405b441a2b 332 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 42 315 3.7E-50 T 14-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RY45_02465 ad1840e401c78f4f2702577481825f75 298 Gene3D G3DSA:3.30.1490.20 115 181 4.7E-24 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_02465 ad1840e401c78f4f2702577481825f75 298 Gene3D G3DSA:3.30.470.80 182 295 1.9E-42 T 14-10-2018 RY45_02465 ad1840e401c78f4f2702577481825f75 298 Pfam PF08443 RimK-like ATP-grasp domain 98 285 5.6E-70 T 14-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 RY45_02465 ad1840e401c78f4f2702577481825f75 298 Gene3D G3DSA:3.40.50.20 1 114 1.8E-39 T 14-10-2018 RY45_02465 ad1840e401c78f4f2702577481825f75 298 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 52.093 T 14-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK RY45_02465 ad1840e401c78f4f2702577481825f75 298 SUPERFAMILY SSF56059 98 287 1.14E-48 T 14-10-2018 RY45_02465 ad1840e401c78f4f2702577481825f75 298 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 284 1.3E-84 T 14-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 SUPERFAMILY SSF63411 4 162 1.56E-64 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 3.3E-49 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 3.3E-49 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 3.3E-49 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 3.3E-49 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 3.3E-49 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 34.63 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 PIRSF PIRSF006160 1 162 1.4E-63 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 153 1.1E-59 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 Gene3D G3DSA:3.30.1360.80 1 169 5.6E-70 T 14-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_03960 3d0d780f193f7c292f24cf27a68cf0b1 169 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 154 6.0E-68 T 14-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_16170 3c81fd96bc98b3267e6dba913baed298 382 ProSitePatterns PS00336 Beta-lactamase class-C active site. 81 88 - T 14-10-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 RY45_16170 3c81fd96bc98b3267e6dba913baed298 382 Pfam PF00144 Beta-lactamase 33 379 9.0E-79 T 14-10-2018 IPR001466 Beta-lactamase-related RY45_16170 3c81fd96bc98b3267e6dba913baed298 382 SUPERFAMILY SSF56601 26 380 5.64E-89 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_16170 3c81fd96bc98b3267e6dba913baed298 382 Gene3D G3DSA:3.40.710.10 27 382 2.3E-131 T 14-10-2018 RY45_14985 d55cacd62f5a38db6d425f6f7a75f0eb 353 SUPERFAMILY SSF160355 58 314 3.27E-47 T 14-10-2018 RY45_14985 d55cacd62f5a38db6d425f6f7a75f0eb 353 Gene3D G3DSA:1.10.287.210 195 301 4.5E-72 T 14-10-2018 RY45_14985 d55cacd62f5a38db6d425f6f7a75f0eb 353 Pfam PF13807 G-rich domain on putative tyrosine kinase 309 346 5.8E-8 T 14-10-2018 IPR032807 Tyrosine kinase, G-rich domain RY45_14985 d55cacd62f5a38db6d425f6f7a75f0eb 353 Gene3D G3DSA:3.30.1890.10 58 314 4.5E-72 T 14-10-2018 RY45_14985 d55cacd62f5a38db6d425f6f7a75f0eb 353 Pfam PF02706 Chain length determinant protein 19 116 1.4E-16 T 14-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 RY45_06340 91f6e90a6f265271669b1076fba8e259 170 SMART SM00935 13 167 9.5E-52 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 RY45_06340 91f6e90a6f265271669b1076fba8e259 170 PIRSF PIRSF002094 1 170 3.2E-48 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 RY45_06340 91f6e90a6f265271669b1076fba8e259 170 Gene3D G3DSA:3.30.910.20 24 167 9.1E-44 T 14-10-2018 IPR024930 Skp domain superfamily RY45_06340 91f6e90a6f265271669b1076fba8e259 170 Pfam PF03938 Outer membrane protein (OmpH-like) 12 165 2.7E-33 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 RY45_06340 91f6e90a6f265271669b1076fba8e259 170 SUPERFAMILY SSF111384 24 166 7.32E-37 T 14-10-2018 RY45_13435 7b2ca94654bb57b77634b62629c56766 592 Pfam PF08439 Oligopeptidase F 114 179 2.0E-10 T 14-10-2018 IPR013647 Oligopeptidase F, N-terminal domain RY45_13435 7b2ca94654bb57b77634b62629c56766 592 Gene3D G3DSA:1.20.140.70 19 174 1.7E-5 T 14-10-2018 RY45_13435 7b2ca94654bb57b77634b62629c56766 592 Gene3D G3DSA:1.10.1370.20 219 592 7.1E-97 T 14-10-2018 RY45_13435 7b2ca94654bb57b77634b62629c56766 592 SUPERFAMILY SSF55486 6 578 1.1E-81 T 14-10-2018 RY45_13435 7b2ca94654bb57b77634b62629c56766 592 Pfam PF01432 Peptidase family M3 196 571 3.3E-19 T 14-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 RY45_03160 b8944ef348264bf4b92da4757134a082 330 SUPERFAMILY SSF144083 266 327 7.98E-14 T 14-10-2018 RY45_03160 b8944ef348264bf4b92da4757134a082 330 Gene3D G3DSA:1.20.58.340 144 265 7.3E-37 T 14-10-2018 RY45_03160 b8944ef348264bf4b92da4757134a082 330 Gene3D G3DSA:1.20.58.340 273 330 1.1E-11 T 14-10-2018 RY45_03160 b8944ef348264bf4b92da4757134a082 330 Pfam PF01544 CorA-like Mg2+ transporter protein 43 325 1.8E-60 T 14-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RY45_03160 b8944ef348264bf4b92da4757134a082 330 SUPERFAMILY SSF143865 17 262 9.29E-51 T 14-10-2018 RY45_03160 b8944ef348264bf4b92da4757134a082 330 Gene3D G3DSA:3.30.460.20 5 142 1.1E-36 T 14-10-2018 RY45_17135 712876257c51fa35bf29ea1af55c1e5f 324 SUPERFAMILY SSF161098 90 303 5.42E-16 T 14-10-2018 IPR035906 MetI-like superfamily RY45_17135 712876257c51fa35bf29ea1af55c1e5f 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 318 6.1E-39 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_17135 712876257c51fa35bf29ea1af55c1e5f 324 Gene3D G3DSA:1.10.3720.10 84 314 1.1E-19 T 14-10-2018 IPR035906 MetI-like superfamily RY45_01915 861177f878db428c150e8c3b1bcce209 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.269 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RY45_01915 861177f878db428c150e8c3b1bcce209 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.9E-71 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RY45_01915 861177f878db428c150e8c3b1bcce209 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 14-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01915 861177f878db428c150e8c3b1bcce209 177 SUPERFAMILY SSF56053 83 177 1.32E-34 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01915 861177f878db428c150e8c3b1bcce209 177 Gene3D G3DSA:3.90.930.12 83 177 4.1E-39 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01915 861177f878db428c150e8c3b1bcce209 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.2E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RY45_01915 861177f878db428c150e8c3b1bcce209 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.2E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RY45_01915 861177f878db428c150e8c3b1bcce209 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.2E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RY45_01915 861177f878db428c150e8c3b1bcce209 177 SUPERFAMILY SSF56053 1 82 7.72E-23 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01915 861177f878db428c150e8c3b1bcce209 177 Pfam PF00347 Ribosomal protein L6 90 164 6.7E-20 T 14-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01915 861177f878db428c150e8c3b1bcce209 177 Pfam PF00347 Ribosomal protein L6 11 82 2.6E-19 T 14-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01915 861177f878db428c150e8c3b1bcce209 177 PIRSF PIRSF002162 1 177 2.0E-42 T 14-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01915 861177f878db428c150e8c3b1bcce209 177 Gene3D G3DSA:3.90.930.12 1 82 9.7E-28 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_09405 c6f416dba29c02aae2c5b3b4fd63b640 98 SMART SM00418 8 89 5.5E-9 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_09405 c6f416dba29c02aae2c5b3b4fd63b640 98 Pfam PF12840 Helix-turn-helix domain 7 69 9.1E-15 T 14-10-2018 RY45_09405 c6f416dba29c02aae2c5b3b4fd63b640 98 SUPERFAMILY SSF46785 2 93 1.46E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09405 c6f416dba29c02aae2c5b3b4fd63b640 98 Gene3D G3DSA:1.10.10.10 1 96 1.9E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01535 7b2dab4714d1e5d817def2fa0af6e4ab 170 SUPERFAMILY SSF54862 22 167 4.19E-19 T 14-10-2018 RY45_01535 7b2dab4714d1e5d817def2fa0af6e4ab 170 Pfam PF13187 4Fe-4S dicluster domain 41 96 9.7E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_01535 7b2dab4714d1e5d817def2fa0af6e4ab 170 Gene3D G3DSA:3.30.70.20 112 170 1.3E-9 T 14-10-2018 RY45_01535 7b2dab4714d1e5d817def2fa0af6e4ab 170 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 82 93 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_01535 7b2dab4714d1e5d817def2fa0af6e4ab 170 Gene3D G3DSA:3.30.70.20 32 111 5.2E-11 T 14-10-2018 RY45_13105 fe31b0d7879ec019a8d34c8ed3f87065 341 Gene3D G3DSA:3.30.70.20 37 227 6.3E-50 T 14-10-2018 RY45_13105 fe31b0d7879ec019a8d34c8ed3f87065 341 Pfam PF13247 4Fe-4S dicluster domain 107 208 7.8E-24 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13105 fe31b0d7879ec019a8d34c8ed3f87065 341 SUPERFAMILY SSF54862 39 326 1.42E-70 T 14-10-2018 RY45_13105 fe31b0d7879ec019a8d34c8ed3f87065 341 Gene3D G3DSA:3.30.70.20 36 177 6.3E-50 T 14-10-2018 RY45_13105 fe31b0d7879ec019a8d34c8ed3f87065 341 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 1 27 2.4E-5 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_13105 fe31b0d7879ec019a8d34c8ed3f87065 341 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 146 157 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_01585 46f7b3b7ba0e8afc0696456e5d97175c 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 5.3E-61 T 14-10-2018 IPR007456 Smg RY45_01585 46f7b3b7ba0e8afc0696456e5d97175c 157 Hamap MF_00598 Protein Smg [smg]. 1 157 32.039 T 14-10-2018 IPR007456 Smg RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 2.8E-22 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 Gene3D G3DSA:1.10.274.10 21 146 1.5E-81 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 SUPERFAMILY SSF51621 249 549 1.33E-112 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 SUPERFAMILY SSF47831 24 143 4.18E-34 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 SUPERFAMILY SSF52009 125 246 1.57E-36 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 Gene3D G3DSA:3.50.30.10 4 233 1.5E-81 T 14-10-2018 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 565 1.1E-248 T 14-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 Gene3D G3DSA:3.20.20.60 234 575 1.9E-129 T 14-10-2018 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 PIRSF PIRSF000732 1 574 1.0E-221 T 14-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 2.2E-30 T 14-10-2018 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 2.2E-30 T 14-10-2018 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 2.2E-30 T 14-10-2018 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 2.2E-30 T 14-10-2018 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 251 541 4.6E-127 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RY45_15685 23fe0636e004e35ea76ee2fb6100164c 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 4.7E-32 T 14-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 SUPERFAMILY SSF51905 463 649 1.65E-21 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 Gene3D G3DSA:3.50.50.60 472 624 7.1E-116 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 617 633 4.1E-17 T 14-10-2018 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 500 518 4.1E-17 T 14-10-2018 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 460 478 4.1E-17 T 14-10-2018 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 4.1E-17 T 14-10-2018 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 SUPERFAMILY SSF51971 334 518 1.77E-40 T 14-10-2018 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 SUPERFAMILY SSF51395 3 363 8.46E-112 T 14-10-2018 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 Gene3D G3DSA:3.20.20.70 3 369 1.3E-123 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 644 1.7E-24 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 377 399 5.9E-6 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 496 520 5.9E-6 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 Gene3D G3DSA:3.40.50.720 376 664 7.1E-116 T 14-10-2018 RY45_17310 b6c6f11f4b9a9c460878edcfae4b0e15 671 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 1.8E-83 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RY45_12845 c4ec64df0453cfa6dc9b36cbb1b18b5c 314 Pfam PF01497 Periplasmic binding protein 72 277 2.5E-24 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain RY45_12845 c4ec64df0453cfa6dc9b36cbb1b18b5c 314 Gene3D G3DSA:3.40.50.1980 135 308 2.9E-43 T 14-10-2018 RY45_12845 c4ec64df0453cfa6dc9b36cbb1b18b5c 314 SUPERFAMILY SSF53807 28 300 2.9E-56 T 14-10-2018 RY45_12845 c4ec64df0453cfa6dc9b36cbb1b18b5c 314 Gene3D G3DSA:3.40.50.1980 22 132 5.1E-26 T 14-10-2018 RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 Gene3D G3DSA:1.20.1250.20 256 457 3.0E-14 T 14-10-2018 RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 299 323 9.5E-10 T 14-10-2018 RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 79 101 9.5E-10 T 14-10-2018 RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 397 416 9.5E-10 T 14-10-2018 RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 9.5E-10 T 14-10-2018 RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 206 224 9.5E-10 T 14-10-2018 RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 SUPERFAMILY SSF103473 8 453 1.01E-58 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 Pfam PF07690 Major Facilitator Superfamily 21 406 4.4E-52 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_21460 14b3d86ac08f349b548e5cf6282f6514 474 Gene3D G3DSA:1.20.1720.10 17 254 3.2E-46 T 14-10-2018 RY45_08805 59428a4198463f0d502f19bf6561f7f4 576 Gene3D G3DSA:3.30.1510.10 128 259 2.4E-183 T 14-10-2018 RY45_08805 59428a4198463f0d502f19bf6561f7f4 576 Pfam PF01268 Formate--tetrahydrofolate ligase 3 575 7.3E-238 T 14-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RY45_08805 59428a4198463f0d502f19bf6561f7f4 576 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 340 351 - T 14-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RY45_08805 59428a4198463f0d502f19bf6561f7f4 576 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 576 42.451 T 14-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RY45_08805 59428a4198463f0d502f19bf6561f7f4 576 SUPERFAMILY SSF52540 4 574 1.54E-214 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08805 59428a4198463f0d502f19bf6561f7f4 576 Gene3D G3DSA:3.40.50.300 6 458 2.4E-183 T 14-10-2018 RY45_08805 59428a4198463f0d502f19bf6561f7f4 576 Gene3D G3DSA:3.10.410.10 463 552 2.1E-30 T 14-10-2018 RY45_08805 59428a4198463f0d502f19bf6561f7f4 576 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 102 112 - T 14-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 Gene3D G3DSA:2.40.240.50 142 280 3.7E-135 T 14-10-2018 RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 Pfam PF06725 3D domain 295 371 2.6E-19 T 14-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 Pfam PF03562 MltA specific insert domain 168 275 1.2E-33 T 14-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 Pfam PF03562 MltA specific insert domain 132 162 4.4E-7 T 14-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 SMART SM00925 142 275 4.0E-69 T 14-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 Gene3D G3DSA:2.40.40.10 74 371 3.7E-135 T 14-10-2018 IPR036908 RlpA-like domain superfamily RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 SUPERFAMILY SSF50685 49 372 1.33E-104 T 14-10-2018 IPR036908 RlpA-like domain superfamily RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 PIRSF PIRSF019422 165 380 4.2E-66 T 14-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A RY45_11185 5a0e55781bc1953c169c0c5004c2875b 383 PIRSF PIRSF019422 1 163 7.9E-11 T 14-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A RY45_07170 6c08bd05617cd632b0d36030f6e1452f 224 SUPERFAMILY SSF52172 1 176 2.13E-39 T 14-10-2018 IPR011006 CheY-like superfamily RY45_07170 6c08bd05617cd632b0d36030f6e1452f 224 Gene3D G3DSA:3.40.50.2300 1 121 1.4E-37 T 14-10-2018 RY45_07170 6c08bd05617cd632b0d36030f6e1452f 224 SMART SM00862 145 219 1.4E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_07170 6c08bd05617cd632b0d36030f6e1452f 224 Gene3D G3DSA:1.10.10.10 123 223 7.8E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_07170 6c08bd05617cd632b0d36030f6e1452f 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 219 2.3E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_07170 6c08bd05617cd632b0d36030f6e1452f 224 SMART SM00448 1 112 2.9E-40 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_07170 6c08bd05617cd632b0d36030f6e1452f 224 Pfam PF00072 Response regulator receiver domain 3 112 1.9E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13765 438876450dd4b2ae80d27fb0f15c3914 524 Gene3D G3DSA:3.40.50.720 380 524 4.4E-31 T 14-10-2018 RY45_13765 438876450dd4b2ae80d27fb0f15c3914 524 Pfam PF02254 TrkA-N domain 388 504 1.4E-18 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RY45_13765 438876450dd4b2ae80d27fb0f15c3914 524 SUPERFAMILY SSF51735 388 517 1.42E-15 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_13765 438876450dd4b2ae80d27fb0f15c3914 524 Gene3D G3DSA:1.20.1530.20 3 358 7.5E-45 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily RY45_13765 438876450dd4b2ae80d27fb0f15c3914 524 Pfam PF00999 Sodium/hydrogen exchanger family 5 346 2.0E-38 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RY45_21055 9a3686bcf936cf5c97167773ca5b3ae4 166 Pfam PF00466 Ribosomal protein L10 6 101 4.7E-27 T 14-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RY45_21055 9a3686bcf936cf5c97167773ca5b3ae4 166 SUPERFAMILY SSF160369 5 161 7.32E-49 T 14-10-2018 RY45_21055 9a3686bcf936cf5c97167773ca5b3ae4 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 27.013 T 14-10-2018 IPR022973 Ribosomal protein L10 RY45_21055 9a3686bcf936cf5c97167773ca5b3ae4 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 14-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_21055 9a3686bcf936cf5c97167773ca5b3ae4 166 Gene3D G3DSA:3.30.70.1730 1 126 1.4E-36 T 14-10-2018 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 133 141 - T 14-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PRINTS PR00714 Phosphomannose isomerase type I signature 133 156 4.6E-66 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PRINTS PR00714 Phosphomannose isomerase type I signature 40 55 4.6E-66 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PRINTS PR00714 Phosphomannose isomerase type I signature 230 245 4.6E-66 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PRINTS PR00714 Phosphomannose isomerase type I signature 265 284 4.6E-66 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PRINTS PR00714 Phosphomannose isomerase type I signature 246 265 4.6E-66 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PRINTS PR00714 Phosphomannose isomerase type I signature 284 303 4.6E-66 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PRINTS PR00714 Phosphomannose isomerase type I signature 88 109 4.6E-66 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PRINTS PR00714 Phosphomannose isomerase type I signature 12 30 4.6E-66 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 Gene3D G3DSA:2.60.120.10 311 389 1.3E-130 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 10 389 8.4E-91 T 14-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 SUPERFAMILY SSF51182 7 381 1.05E-99 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 Pfam PF01238 Phosphomannose isomerase type I 11 358 3.0E-79 T 14-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 PIRSF PIRSF001480 7 398 9.0E-100 T 14-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 265 290 - T 14-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 Gene3D G3DSA:1.10.441.10 157 310 1.3E-130 T 14-10-2018 RY45_07565 57c1b1b24d5b6967b15727ced2545623 399 Gene3D G3DSA:2.60.120.10 14 285 1.3E-130 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_21440 b8644752c025378d81705d1688b57bed 581 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 4 91 2.7E-25 T 14-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_21440 b8644752c025378d81705d1688b57bed 581 SUPERFAMILY SSF47323 458 581 4.32E-34 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_21440 b8644752c025378d81705d1688b57bed 581 Gene3D G3DSA:3.30.1360.70 2 109 6.8E-30 T 14-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 SMART SM01016 3 91 1.2E-39 T 14-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_21440 b8644752c025378d81705d1688b57bed 581 Hamap MF_00123 Arginine--tRNA ligase [argS]. 7 581 27.337 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 Gene3D G3DSA:3.40.50.620 112 457 2.2E-106 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_21440 b8644752c025378d81705d1688b57bed 581 SMART SM00836 464 581 6.3E-37 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RY45_21440 b8644752c025378d81705d1688b57bed 581 SUPERFAMILY SSF52374 115 457 1.5E-89 T 14-10-2018 RY45_21440 b8644752c025378d81705d1688b57bed 581 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 24 581 5.6E-183 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 SUPERFAMILY SSF55190 8 103 1.29E-25 T 14-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 Gene3D G3DSA:1.10.730.10 458 581 1.8E-34 T 14-10-2018 RY45_21440 b8644752c025378d81705d1688b57bed 581 Pfam PF00750 tRNA synthetases class I (R) 101 450 4.1E-158 T 14-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 157 170 2.3E-20 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 133 149 2.3E-20 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 118 133 2.3E-20 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 307 328 2.3E-20 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RY45_21440 b8644752c025378d81705d1688b57bed 581 Pfam PF05746 DALR anticodon binding domain 464 581 2.4E-31 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 SUPERFAMILY SSF52374 5 388 3.58E-101 T 14-10-2018 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 SUPERFAMILY SSF50249 575 676 4.41E-33 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 SUPERFAMILY SSF57770 142 176 1.57E-12 T 14-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 Gene3D G3DSA:1.10.730.10 390 527 2.8E-35 T 14-10-2018 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 Pfam PF08264 Anticodon-binding domain of tRNA 417 503 2.0E-6 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 252 263 1.5E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 1.5E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 1.5E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 1.5E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 385 396 1.5E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 292 307 1.5E-25 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 Pfam PF09334 tRNA synthetases class I (M) 8 397 6.7E-163 T 14-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 Gene3D G3DSA:2.20.28.20 142 176 8.6E-158 T 14-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 Gene3D G3DSA:2.40.50.140 566 677 1.1E-35 T 14-10-2018 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 536 9.7E-199 T 14-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 Pfam PF01588 Putative tRNA binding domain 582 674 1.3E-24 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 546 41.09 T 14-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 541 677 4.2E-46 T 14-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 SUPERFAMILY SSF47323 390 548 1.16E-46 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_11690 a0c4a0b4672ea1ad0559ab8c65cbd8a2 677 Gene3D G3DSA:3.40.50.620 8 385 8.6E-158 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_18945 69d4468c2e5d8f9792f3f74aaad8aa9f 61 Pfam PF14549 DNA-binding transcriptional regulator Cro 2 60 4.0E-23 T 14-10-2018 RY45_18945 69d4468c2e5d8f9792f3f74aaad8aa9f 61 SUPERFAMILY SSF47413 1 56 1.18E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_18945 69d4468c2e5d8f9792f3f74aaad8aa9f 61 Gene3D G3DSA:1.10.260.40 1 60 2.1E-25 T 14-10-2018 RY45_03260 5f67b82d24a4ab7da1780a52a2d9ff4d 221 Pfam PF07729 FCD domain 80 205 2.3E-19 T 14-10-2018 IPR011711 GntR, C-terminal RY45_03260 5f67b82d24a4ab7da1780a52a2d9ff4d 221 SMART SM00345 12 70 3.3E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_03260 5f67b82d24a4ab7da1780a52a2d9ff4d 221 Gene3D G3DSA:1.10.10.10 1 71 9.6E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03260 5f67b82d24a4ab7da1780a52a2d9ff4d 221 SUPERFAMILY SSF46785 6 84 2.61E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_03260 5f67b82d24a4ab7da1780a52a2d9ff4d 221 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 5.4E-15 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_03260 5f67b82d24a4ab7da1780a52a2d9ff4d 221 SMART SM00895 80 206 7.3E-13 T 14-10-2018 IPR011711 GntR, C-terminal RY45_03260 5f67b82d24a4ab7da1780a52a2d9ff4d 221 Gene3D G3DSA:1.20.120.530 76 219 3.6E-23 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_03260 5f67b82d24a4ab7da1780a52a2d9ff4d 221 SUPERFAMILY SSF48008 78 214 3.66E-20 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_20835 1f921e94282d5dbc43d2b1f2b558b8f9 335 SUPERFAMILY SSF52540 4 240 2.6E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20835 1f921e94282d5dbc43d2b1f2b558b8f9 335 Pfam PF00005 ABC transporter 20 161 2.2E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_20835 1f921e94282d5dbc43d2b1f2b558b8f9 335 SUPERFAMILY SSF50331 250 331 4.08E-5 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RY45_20835 1f921e94282d5dbc43d2b1f2b558b8f9 335 SMART SM00382 28 211 1.2E-20 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_20835 1f921e94282d5dbc43d2b1f2b558b8f9 335 Gene3D G3DSA:3.40.50.300 1 238 8.2E-81 T 14-10-2018 RY45_20835 1f921e94282d5dbc43d2b1f2b558b8f9 335 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_20835 1f921e94282d5dbc43d2b1f2b558b8f9 335 Pfam PF08402 TOBE domain 257 330 3.6E-6 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RY45_01015 d3817cc27d64032cc85e0a2013dbcf7c 174 SUPERFAMILY SSF52218 3 166 1.04E-29 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_01015 d3817cc27d64032cc85e0a2013dbcf7c 174 Gene3D G3DSA:3.40.50.360 1 104 9.5E-10 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_01015 d3817cc27d64032cc85e0a2013dbcf7c 174 Pfam PF12724 Flavodoxin domain 5 151 7.8E-46 T 14-10-2018 IPR026816 Flavodoxin domain RY45_13160 72bd169dcde65667e5a86b1237655f44 369 Gene3D G3DSA:2.40.37.10 8 352 1.2E-132 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 SUPERFAMILY SSF50621 226 359 1.67E-47 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 14-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 SUPERFAMILY SSF51419 8 234 1.16E-69 T 14-10-2018 IPR029066 PLP-binding barrel RY45_13160 72bd169dcde65667e5a86b1237655f44 369 SMART SM01005 233 357 2.4E-65 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 TIGRFAM TIGR00492 alr: alanine racemase 4 354 9.1E-126 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 120 132 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 266 281 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 60 78 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 339 352 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 26 42 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 287 304 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 249 264 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 155 166 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 PRINTS PR00992 Alanine racemase signature 192 219 1.4E-70 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 Pfam PF00842 Alanine racemase, C-terminal domain 233 353 1.1E-41 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 Hamap MF_01201 Alanine racemase. 1 357 34.409 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13160 72bd169dcde65667e5a86b1237655f44 369 Gene3D G3DSA:3.20.20.10 10 217 1.2E-132 T 14-10-2018 IPR029066 PLP-binding barrel RY45_13160 72bd169dcde65667e5a86b1237655f44 369 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 7.5E-72 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_03530 14adc9271a698c9d973eba50e857bf4e 158 Pfam PF03734 L,D-transpeptidase catalytic domain 24 156 1.5E-20 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RY45_03530 14adc9271a698c9d973eba50e857bf4e 158 Gene3D G3DSA:2.40.440.10 12 158 6.6E-19 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_03530 14adc9271a698c9d973eba50e857bf4e 158 SUPERFAMILY SSF141523 22 156 6.28E-24 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 4.4E-20 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 4.4E-20 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 197 207 4.4E-20 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 145 166 4.4E-20 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 Pfam PF00579 tRNA synthetases class I (W and Y) 4 285 3.1E-52 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 Gene3D G3DSA:1.10.240.10 191 298 2.6E-102 T 14-10-2018 RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 3.6E-69 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 Gene3D G3DSA:3.40.50.620 6 325 2.6E-102 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_00240 2ada024856a200c80eaf42c6edde13ad 337 SUPERFAMILY SSF52374 5 330 1.24E-76 T 14-10-2018 RY45_13145 59f7086aa65e5b899186b5734de853ea 358 Pfam PF00072 Response regulator receiver domain 5 108 1.1E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13145 59f7086aa65e5b899186b5734de853ea 358 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 355 39.565 T 14-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_13145 59f7086aa65e5b899186b5734de853ea 358 SUPERFAMILY SSF52738 167 351 1.24E-69 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal RY45_13145 59f7086aa65e5b899186b5734de853ea 358 Gene3D G3DSA:3.40.50.2300 1 135 1.2E-30 T 14-10-2018 RY45_13145 59f7086aa65e5b899186b5734de853ea 358 PIRSF PIRSF000876 1 353 1.4E-132 T 14-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_13145 59f7086aa65e5b899186b5734de853ea 358 SUPERFAMILY SSF52172 2 107 5.41E-28 T 14-10-2018 IPR011006 CheY-like superfamily RY45_13145 59f7086aa65e5b899186b5734de853ea 358 Gene3D G3DSA:3.40.50.180 162 354 8.1E-74 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal RY45_13145 59f7086aa65e5b899186b5734de853ea 358 Pfam PF01339 CheB methylesterase 172 350 9.8E-61 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_13145 59f7086aa65e5b899186b5734de853ea 358 SMART SM00448 3 119 7.0E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_04110 8c8b0454c5a77eb0070eaac3829c6596 112 Pfam PF12680 SnoaL-like domain 7 104 1.0E-9 T 14-10-2018 IPR037401 SnoaL-like domain RY45_04110 8c8b0454c5a77eb0070eaac3829c6596 112 PIRSF PIRSF030561 1 110 2.9E-29 T 14-10-2018 IPR008317 Uncharacterised conserved protein UCP030561 RY45_04110 8c8b0454c5a77eb0070eaac3829c6596 112 Gene3D G3DSA:3.10.450.50 2 111 8.3E-30 T 14-10-2018 RY45_04110 8c8b0454c5a77eb0070eaac3829c6596 112 SUPERFAMILY SSF54427 3 110 4.5E-23 T 14-10-2018 IPR032710 NTF2-like domain superfamily RY45_09395 436a68e938e294e18c864c7524dbf259 958 Gene3D G3DSA:3.40.640.10 523 755 4.0E-59 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_09395 436a68e938e294e18c864c7524dbf259 958 Gene3D G3DSA:3.40.640.10 95 353 2.0E-102 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_09395 436a68e938e294e18c864c7524dbf259 958 Pfam PF02347 Glycine cleavage system P-protein 16 438 1.3E-176 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RY45_09395 436a68e938e294e18c864c7524dbf259 958 Pfam PF02347 Glycine cleavage system P-protein 626 740 1.0E-6 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RY45_09395 436a68e938e294e18c864c7524dbf259 958 SUPERFAMILY SSF53383 17 438 7.36E-96 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_09395 436a68e938e294e18c864c7524dbf259 958 Gene3D G3DSA:3.90.1150.10 765 898 2.2E-40 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_09395 436a68e938e294e18c864c7524dbf259 958 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 950 0.0 T 14-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RY45_09395 436a68e938e294e18c864c7524dbf259 958 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 956 25.356 T 14-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RY45_09395 436a68e938e294e18c864c7524dbf259 958 SUPERFAMILY SSF53383 472 951 2.42E-97 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 153 170 - T 14-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 SUPERFAMILY SSF51735 3 269 5.88E-50 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 268 2.6E-101 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 268 34.347 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 SUPERFAMILY SSF55347 130 239 1.07E-37 T 14-10-2018 RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 Gene3D G3DSA:3.30.360.10 130 237 1.2E-100 T 14-10-2018 RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 Gene3D G3DSA:3.40.50.720 6 267 1.2E-100 T 14-10-2018 RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 PIRSF PIRSF000161 3 270 1.0E-85 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 131 267 4.2E-42 T 14-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_14335 75bafe1b75f63d4b09f72cc95fb882c9 270 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 5 128 2.2E-38 T 14-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Pfam PF00512 His Kinase A (phospho-acceptor) domain 704 770 2.6E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Gene3D G3DSA:3.40.190.10 381 472 1.5E-42 T 14-10-2018 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SMART SM00387 815 928 1.1E-33 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SMART SM00388 704 770 1.6E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Gene3D G3DSA:3.40.190.10 40 267 3.8E-43 T 14-10-2018 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SMART SM00062 49 271 6.0E-9 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SMART SM00062 295 513 5.1E-18 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SUPERFAMILY SSF55874 760 928 1.57E-43 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Gene3D G3DSA:3.40.50.12740 963 1087 9.8E-38 T 14-10-2018 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SUPERFAMILY SSF47384 687 771 3.14E-19 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SMART SM00448 964 1075 7.1E-33 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 816 927 7.3E-24 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 298 509 1.0E-20 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SUPERFAMILY SSF53850 42 257 1.15E-27 T 14-10-2018 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Gene3D G3DSA:3.40.190.10 286 509 1.5E-42 T 14-10-2018 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 570 691 1.7E-5 T 14-10-2018 IPR000014 PAS domain RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Pfam PF08448 PAS fold 574 685 1.3E-8 T 14-10-2018 IPR013656 PAS fold-4 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Gene3D G3DSA:3.30.565.10 772 928 1.2E-42 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SMART SM00918 306 352 0.0046 T 14-10-2018 IPR019594 Ionotropic glutamate receptor, L-glutamate and glycine-binding domain GO:0004970|GO:0016020 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Gene3D G3DSA:3.40.190.10 137 230 3.8E-43 T 14-10-2018 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Pfam PF00072 Response regulator receiver domain 966 1075 2.8E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SUPERFAMILY SSF53850 288 514 4.3E-31 T 14-10-2018 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 912 925 5.8E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 873 883 5.8E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 855 869 5.8E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 888 906 5.8E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 50 267 4.3E-18 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SUPERFAMILY SSF52172 963 1079 5.55E-36 T 14-10-2018 IPR011006 CheY-like superfamily RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 SUPERFAMILY SSF55785 557 682 1.12E-10 T 14-10-2018 IPR035965 PAS domain superfamily RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Gene3D G3DSA:3.30.450.20 552 693 8.4E-18 T 14-10-2018 RY45_15520 e569607c83695d12ba3072c5b7d9b6e1 1089 Gene3D G3DSA:1.10.287.130 694 771 3.8E-22 T 14-10-2018 RY45_06625 848c7fd2a6a1f617c3f7b10f94c5e8ad 435 Pfam PF03390 2-hydroxycarboxylate transporter family 19 429 2.3E-143 T 14-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 RY45_06625 848c7fd2a6a1f617c3f7b10f94c5e8ad 435 PIRSF PIRSF005348 2 435 4.6E-158 T 14-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 RY45_02055 0f72c9e2317c3c30226d402e0c97cdf6 517 Gene3D G3DSA:1.20.1720.10 15 198 1.9E-37 T 14-10-2018 RY45_02055 0f72c9e2317c3c30226d402e0c97cdf6 517 SUPERFAMILY SSF103473 3 510 5.62E-61 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_02055 0f72c9e2317c3c30226d402e0c97cdf6 517 Pfam PF07690 Major Facilitator Superfamily 16 409 3.7E-43 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_02055 0f72c9e2317c3c30226d402e0c97cdf6 517 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 13 499 3.5E-128 T 14-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RY45_12385 3d00cefe1cde761976300343aa78a23e 185 ProSitePatterns PS00398 Site-specific recombinases signature 2. 54 66 - T 14-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 RY45_12385 3d00cefe1cde761976300343aa78a23e 185 Pfam PF00239 Resolvase, N terminal domain 4 135 1.6E-42 T 14-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RY45_12385 3d00cefe1cde761976300343aa78a23e 185 Pfam PF09339 IclR helix-turn-helix domain 150 182 2.9E-5 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RY45_12385 3d00cefe1cde761976300343aa78a23e 185 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 14-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 RY45_12385 3d00cefe1cde761976300343aa78a23e 185 SUPERFAMILY SSF53041 1 135 8.11E-43 T 14-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RY45_12385 3d00cefe1cde761976300343aa78a23e 185 Gene3D G3DSA:1.10.10.60 137 179 1.8E-8 T 14-10-2018 RY45_12385 3d00cefe1cde761976300343aa78a23e 185 Gene3D G3DSA:3.40.50.1390 2 123 5.3E-43 T 14-10-2018 RY45_12385 3d00cefe1cde761976300343aa78a23e 185 SMART SM00857 3 135 1.8E-53 T 14-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 652 695 1.1E-18 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Gene3D G3DSA:3.30.930.10 2 250 5.0E-121 T 14-10-2018 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Gene3D G3DSA:3.10.310.40 764 871 1.5E-33 T 14-10-2018 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Gene3D G3DSA:2.40.30.130 465 551 8.0E-12 T 14-10-2018 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 SUPERFAMILY SSF55681 3 253 6.96E-108 T 14-10-2018 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Gene3D G3DSA:3.30.54.20 623 676 7.3E-51 T 14-10-2018 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Gene3D G3DSA:3.30.980.10 562 696 7.3E-51 T 14-10-2018 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Pfam PF01411 tRNA synthetases class II (A) 7 555 1.0E-221 T 14-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 SMART SM00863 652 695 5.9E-23 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 SUPERFAMILY SSF50447 454 551 1.84E-18 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 304 317 1.5E-32 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 1.5E-32 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 1.5E-32 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 1.5E-32 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 280 296 1.5E-32 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Pfam PF02272 DHHA1 domain 731 870 7.1E-30 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 197.754 T 14-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 SUPERFAMILY SSF101353 254 462 1.57E-57 T 14-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 SUPERFAMILY SSF55186 551 707 7.59E-51 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RY45_19225 c09a454b34d27980e5f95f575aaf1521 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 853 0.0 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 14-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 SUPERFAMILY SSF118215 9 400 1.22E-118 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 425 37.882 T 14-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 6.2E-37 T 14-10-2018 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 6.2E-37 T 14-10-2018 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 6.2E-37 T 14-10-2018 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 6.2E-37 T 14-10-2018 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 6.2E-37 T 14-10-2018 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 6.2E-37 T 14-10-2018 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 6.2E-37 T 14-10-2018 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 Pfam PF00375 Sodium:dicarboxylate symporter family 9 400 5.0E-109 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 Gene3D G3DSA:1.10.3860.10 1 417 4.1E-118 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_16220 4025160a3fb792bfa26d4a2d9aa63246 426 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 14-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:1.20.120.160 1318 1422 3.8E-15 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:3.40.190.10 131 224 5.6E-36 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:3.40.50.2300 1178 1312 4.7E-32 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SUPERFAMILY SSF53850 282 512 1.15E-40 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Pfam PF00072 Response regulator receiver domain 1183 1292 9.7E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SMART SM00388 827 892 1.3E-22 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 560 682 1.5E-6 T 14-10-2018 IPR000014 PAS domain RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 685 813 6.2E-6 T 14-10-2018 IPR000014 PAS domain RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 253 3.9E-17 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:1.10.287.130 802 890 4.8E-26 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:3.30.450.20 688 801 2.3E-10 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SUPERFAMILY SSF52172 1182 1304 3.98E-32 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SUPERFAMILY SSF47384 813 893 3.73E-20 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:3.40.190.10 36 258 5.6E-36 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:3.30.565.10 891 1052 3.5E-48 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SMART SM00091 688 761 0.97 T 14-10-2018 IPR000014 PAS domain RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SMART SM00091 563 629 3.2 T 14-10-2018 IPR000014 PAS domain RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:3.40.190.10 281 505 2.0E-51 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Pfam PF08448 PAS fold 569 675 7.7E-8 T 14-10-2018 IPR013656 PAS fold-4 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Pfam PF01627 Hpt domain 1332 1395 3.5E-8 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SMART SM00448 1181 1292 4.3E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SMART SM00073 1321 1419 8.6E-9 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SUPERFAMILY SSF55874 881 1050 6.55E-47 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SUPERFAMILY SSF55785 673 805 2.79E-12 T 14-10-2018 IPR035965 PAS domain superfamily RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Pfam PF00512 His Kinase A (phospho-acceptor) domain 828 892 3.4E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SMART SM00387 939 1050 6.9E-38 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SUPERFAMILY SSF47226 1275 1410 4.19E-18 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SUPERFAMILY SSF53850 46 258 5.18E-29 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 940 1049 7.4E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SUPERFAMILY SSF55785 548 674 8.38E-14 T 14-10-2018 IPR035965 PAS domain superfamily RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SMART SM00062 290 509 3.6E-27 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 SMART SM00062 45 264 0.0019 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:3.40.190.10 376 468 2.0E-51 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Gene3D G3DSA:3.30.450.20 548 687 4.3E-15 T 14-10-2018 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1010 1028 2.6E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 PRINTS PR00344 Bacterial sensor protein C-terminal signature 993 1003 2.6E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 PRINTS PR00344 Bacterial sensor protein C-terminal signature 975 989 2.6E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1034 1047 2.6E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05035 1b60759c1528648da7944eefc2ff2c2c 1425 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 291 506 2.7E-30 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_05435 c5977dc3d59bb4b91d7e199562268529 148 SUPERFAMILY SSF103481 64 139 2.62E-7 T 14-10-2018 RY45_05435 c5977dc3d59bb4b91d7e199562268529 148 Pfam PF00893 Small Multidrug Resistance protein 23 129 3.5E-5 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RY45_05435 c5977dc3d59bb4b91d7e199562268529 148 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 21 142 21.233 T 14-10-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF RY45_05435 c5977dc3d59bb4b91d7e199562268529 148 Gene3D G3DSA:1.10.3730.20 20 142 6.6E-5 T 14-10-2018 RY45_16445 49d555bf3a469c530d0e4831b9b21f74 360 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 358 73.134 T 14-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RY45_16445 49d555bf3a469c530d0e4831b9b21f74 360 PIRSF PIRSF001455 4 358 3.1E-107 T 14-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RY45_16445 49d555bf3a469c530d0e4831b9b21f74 360 Pfam PF01761 3-dehydroquinate synthase 65 323 1.1E-108 T 14-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RY45_16445 49d555bf3a469c530d0e4831b9b21f74 360 Gene3D G3DSA:3.40.50.1970 1 170 1.1E-66 T 14-10-2018 RY45_16445 49d555bf3a469c530d0e4831b9b21f74 360 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 352 1.0E-118 T 14-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RY45_16445 49d555bf3a469c530d0e4831b9b21f74 360 SUPERFAMILY SSF56796 4 355 5.23E-118 T 14-10-2018 RY45_16445 49d555bf3a469c530d0e4831b9b21f74 360 Gene3D G3DSA:1.20.1090.10 171 359 5.3E-65 T 14-10-2018 RY45_08675 808203b64ed903c6fbdab6257d48744b 255 SUPERFAMILY SSF53850 16 252 6.38E-26 T 14-10-2018 RY45_08675 808203b64ed903c6fbdab6257d48744b 255 Gene3D G3DSA:3.40.190.10 97 206 3.1E-15 T 14-10-2018 RY45_08675 808203b64ed903c6fbdab6257d48744b 255 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 15 252 2.4E-15 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_08675 808203b64ed903c6fbdab6257d48744b 255 Gene3D G3DSA:3.40.190.10 18 249 3.1E-15 T 14-10-2018 RY45_18160 a599c6f86efbc0ca08dc624e912245ba 149 Gene3D G3DSA:1.20.120.910 19 148 3.2E-34 T 14-10-2018 RY45_18160 a599c6f86efbc0ca08dc624e912245ba 149 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 109 141 4.0E-10 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RY45_18160 a599c6f86efbc0ca08dc624e912245ba 149 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 26 148 29.54 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RY45_18160 a599c6f86efbc0ca08dc624e912245ba 149 SUPERFAMILY SSF57716 109 147 6.41E-10 T 14-10-2018 RY45_18160 a599c6f86efbc0ca08dc624e912245ba 149 SUPERFAMILY SSF109635 8 108 2.88E-35 T 14-10-2018 IPR037187 DksA, N-terminal domain superfamily RY45_18160 a599c6f86efbc0ca08dc624e912245ba 149 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 112 136 - T 14-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RY45_18160 a599c6f86efbc0ca08dc624e912245ba 149 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 30 138 2.5E-50 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 10 125 1.7E-7 T 14-10-2018 IPR000014 PAS domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 238 1.7E-5 T 14-10-2018 IPR000014 PAS domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 SUPERFAMILY SSF55785 117 229 6.63E-17 T 14-10-2018 IPR035965 PAS domain superfamily RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 SMART SM00052 402 647 1.3E-109 T 14-10-2018 IPR001633 EAL domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 Pfam PF08448 PAS fold 15 122 1.0E-16 T 14-10-2018 IPR013656 PAS fold-4 RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 SMART SM00267 231 392 9.4E-19 T 14-10-2018 IPR000160 GGDEF domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 SMART SM00091 8 80 2.3E-4 T 14-10-2018 IPR000014 PAS domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 SMART SM00091 132 199 0.99 T 14-10-2018 IPR000014 PAS domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 Gene3D G3DSA:3.30.450.20 132 240 1.0E-9 T 14-10-2018 RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 Gene3D G3DSA:3.30.70.270 241 404 4.2E-30 T 14-10-2018 RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 Gene3D G3DSA:3.20.20.450 405 655 1.4E-94 T 14-10-2018 IPR035919 EAL domain superfamily RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 Pfam PF00990 Diguanylate cyclase, GGDEF domain 243 387 7.3E-24 T 14-10-2018 IPR000160 GGDEF domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 Pfam PF13188 PAS domain 135 177 1.6E-5 T 14-10-2018 IPR000014 PAS domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 SUPERFAMILY SSF55785 13 122 1.31E-13 T 14-10-2018 IPR035965 PAS domain superfamily RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 Gene3D G3DSA:3.30.450.20 7 131 6.6E-19 T 14-10-2018 RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 SUPERFAMILY SSF55073 247 391 1.1E-23 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 Pfam PF00563 EAL domain 409 642 4.6E-73 T 14-10-2018 IPR001633 EAL domain RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 SUPERFAMILY SSF141868 409 651 1.18E-87 T 14-10-2018 IPR035919 EAL domain superfamily RY45_17845 ebe55a718665d075a16fabda93b24fa0 657 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 242 387 4.9E-17 T 14-10-2018 IPR000160 GGDEF domain RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 SUPERFAMILY SSF53187 2 374 6.29E-66 T 14-10-2018 RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 Pfam PF01546 Peptidase family M20/M25/M40 62 370 6.2E-44 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 Gene3D G3DSA:3.30.70.360 179 292 8.4E-129 T 14-10-2018 RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 5 373 1.4E-176 T 14-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 SUPERFAMILY SSF55031 179 288 2.84E-29 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 375 53.069 T 14-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 Pfam PF07687 Peptidase dimerisation domain 175 281 2.3E-24 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 Gene3D G3DSA:3.40.630.10 7 362 8.4E-129 T 14-10-2018 RY45_08055 22c12871b6a3db727539c565b3ba86fb 375 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 135 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RY45_04375 6cfcd945230bed1d914968ae9c4ea981 201 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 22 199 4.5E-54 T 14-10-2018 IPR016476 SH3 domain protein RY45_04375 6cfcd945230bed1d914968ae9c4ea981 201 SMART SM00287 18 83 6.3E-7 T 14-10-2018 IPR003646 SH3-like domain, bacterial-type RY45_04375 6cfcd945230bed1d914968ae9c4ea981 201 Gene3D G3DSA:2.30.30.40 17 83 1.7E-7 T 14-10-2018 RY45_04375 6cfcd945230bed1d914968ae9c4ea981 201 PIRSF PIRSF006158 2 200 4.4E-53 T 14-10-2018 IPR016476 SH3 domain protein RY45_04375 6cfcd945230bed1d914968ae9c4ea981 201 Pfam PF08239 Bacterial SH3 domain 30 80 1.4E-7 T 14-10-2018 IPR003646 SH3-like domain, bacterial-type RY45_09875 a67bf1e57a792a3f568e5cc22da9ea6f 235 Pfam PF06508 Queuosine biosynthesis protein QueC 3 212 1.8E-84 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RY45_09875 a67bf1e57a792a3f568e5cc22da9ea6f 235 PIRSF PIRSF006293 1 224 2.4E-83 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RY45_09875 a67bf1e57a792a3f568e5cc22da9ea6f 235 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 218 50.057 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RY45_09875 a67bf1e57a792a3f568e5cc22da9ea6f 235 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 205 6.2E-85 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RY45_09875 a67bf1e57a792a3f568e5cc22da9ea6f 235 Gene3D G3DSA:3.40.50.620 1 230 7.8E-81 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_09875 a67bf1e57a792a3f568e5cc22da9ea6f 235 SUPERFAMILY SSF52402 2 212 1.06E-66 T 14-10-2018 RY45_07315 b24cc67f64757d3190c58ca13d59a87a 264 Gene3D G3DSA:3.40.50.300 3 263 6.0E-66 T 14-10-2018 RY45_07315 b24cc67f64757d3190c58ca13d59a87a 264 Pfam PF13614 AAA domain 5 179 3.2E-50 T 14-10-2018 IPR025669 AAA domain RY45_07315 b24cc67f64757d3190c58ca13d59a87a 264 PIRSF PIRSF009320 102 238 1.0E-7 T 14-10-2018 RY45_07315 b24cc67f64757d3190c58ca13d59a87a 264 PIRSF PIRSF009320 1 81 7.8E-15 T 14-10-2018 RY45_07315 b24cc67f64757d3190c58ca13d59a87a 264 SUPERFAMILY SSF52540 3 254 4.07E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02315 8c54795a64e76dff5b10bc6a161f7407 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 3.3E-172 T 14-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RY45_02315 8c54795a64e76dff5b10bc6a161f7407 489 Pfam PF00575 S1 RNA binding domain 38 109 8.5E-5 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_02315 8c54795a64e76dff5b10bc6a161f7407 489 SMART SM00316 37 122 4.4E-7 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_02315 8c54795a64e76dff5b10bc6a161f7407 489 Pfam PF10150 Ribonuclease E/G family 124 393 1.5E-103 T 14-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RY45_02315 8c54795a64e76dff5b10bc6a161f7407 489 Gene3D G3DSA:3.40.1260.20 402 489 8.1E-10 T 14-10-2018 RY45_02315 8c54795a64e76dff5b10bc6a161f7407 489 SUPERFAMILY SSF50249 39 128 2.52E-18 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_02315 8c54795a64e76dff5b10bc6a161f7407 489 Gene3D G3DSA:2.40.50.140 31 127 2.3E-31 T 14-10-2018 RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 Gene3D G3DSA:3.30.70.270 358 522 8.4E-49 T 14-10-2018 RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 Pfam PF09084 NMT1/THI5 like 41 250 1.6E-47 T 14-10-2018 IPR015168 SsuA/THI5-like RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 372 518 1.5E-32 T 14-10-2018 IPR000160 GGDEF domain RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 SMART SM00267 362 525 1.3E-50 T 14-10-2018 IPR000160 GGDEF domain RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 Gene3D G3DSA:3.40.190.10 112 211 6.5E-66 T 14-10-2018 RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 SUPERFAMILY SSF53850 29 261 2.92E-31 T 14-10-2018 RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 Pfam PF00990 Diguanylate cyclase, GGDEF domain 373 518 6.3E-38 T 14-10-2018 IPR000160 GGDEF domain RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 Gene3D G3DSA:3.40.190.10 34 299 6.5E-66 T 14-10-2018 RY45_13820 e103c4dca9fa6eec2e8eb063aab49a9f 527 SUPERFAMILY SSF55073 378 519 1.73E-42 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_01900 7be89304107cc518961f30dfb438cdee 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.597 T 14-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01900 7be89304107cc518961f30dfb438cdee 179 Pfam PF00281 Ribosomal protein L5 25 80 2.0E-28 T 14-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01900 7be89304107cc518961f30dfb438cdee 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 5.1E-40 T 14-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01900 7be89304107cc518961f30dfb438cdee 179 Gene3D G3DSA:3.30.1440.10 1 179 8.5E-80 T 14-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01900 7be89304107cc518961f30dfb438cdee 179 PIRSF PIRSF002161 1 179 9.6E-66 T 14-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01900 7be89304107cc518961f30dfb438cdee 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 14-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01900 7be89304107cc518961f30dfb438cdee 179 SUPERFAMILY SSF55282 4 179 3.3E-78 T 14-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_14220 de772f67714807449d66e2ee3db595c6 1485 Gene3D G3DSA:3.20.20.70 430 791 0.0 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_14220 de772f67714807449d66e2ee3db595c6 1485 SUPERFAMILY SSF51395 436 1189 2.85E-258 T 14-10-2018 RY45_14220 de772f67714807449d66e2ee3db595c6 1485 Gene3D G3DSA:2.160.20.60 1197 1467 9.9E-100 T 14-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RY45_14220 de772f67714807449d66e2ee3db595c6 1485 Gene3D G3DSA:3.60.20.10 13 545 0.0 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_14220 de772f67714807449d66e2ee3db595c6 1485 Pfam PF00310 Glutamine amidotransferases class-II 13 425 2.3E-170 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RY45_14220 de772f67714807449d66e2ee3db595c6 1485 SUPERFAMILY SSF69336 1212 1464 1.19E-88 T 14-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RY45_14220 de772f67714807449d66e2ee3db595c6 1485 Pfam PF04898 Glutamate synthase central domain 457 736 3.5E-105 T 14-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 RY45_14220 de772f67714807449d66e2ee3db595c6 1485 SUPERFAMILY SSF56235 13 428 2.77E-148 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_14220 de772f67714807449d66e2ee3db595c6 1485 Pfam PF01645 Conserved region in glutamate synthase 792 1155 8.7E-156 T 14-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RY45_14220 de772f67714807449d66e2ee3db595c6 1485 Pfam PF01493 GXGXG motif 1234 1418 4.7E-76 T 14-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 RY45_14220 de772f67714807449d66e2ee3db595c6 1485 Gene3D G3DSA:3.20.20.70 483 1170 0.0 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_03920 eed8aa6c26515075c603ffda884553fe 128 Gene3D G3DSA:3.30.700.10 9 128 2.5E-19 T 14-10-2018 RY45_03920 eed8aa6c26515075c603ffda884553fe 128 SUPERFAMILY SSF54523 9 107 2.43E-17 T 14-10-2018 RY45_03920 eed8aa6c26515075c603ffda884553fe 128 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 28 1.7E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03920 eed8aa6c26515075c603ffda884553fe 128 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03920 eed8aa6c26515075c603ffda884553fe 128 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 115 9.6E-19 T 14-10-2018 IPR031982 Type IV minor pilin ComP RY45_03920 eed8aa6c26515075c603ffda884553fe 128 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 1.4E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03920 eed8aa6c26515075c603ffda884553fe 128 PRINTS PR00813 Bacterial general secretion pathway protein G signature 7 32 8.3E-7 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RY45_03920 eed8aa6c26515075c603ffda884553fe 128 PRINTS PR00813 Bacterial general secretion pathway protein G signature 43 61 8.3E-7 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RY45_21500 072f9e5007047d7147ce55eb609a584a 161 SUPERFAMILY SSF89562 2 159 1.44E-43 T 14-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily RY45_21500 072f9e5007047d7147ce55eb609a584a 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 5.6E-62 T 14-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 RY45_21500 072f9e5007047d7147ce55eb609a584a 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 7.1E-83 T 14-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 RY45_21500 072f9e5007047d7147ce55eb609a584a 161 Pfam PF03737 Aldolase/RraA 6 152 5.7E-35 T 14-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RY45_21500 072f9e5007047d7147ce55eb609a584a 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.119 T 14-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 RY45_21500 072f9e5007047d7147ce55eb609a584a 161 Gene3D G3DSA:3.50.30.40 1 161 1.7E-56 T 14-10-2018 RY45_00610 da97b768b85bf9397b7af874788f9ad3 259 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 14 75 2.7E-8 T 14-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 RY45_00610 da97b768b85bf9397b7af874788f9ad3 259 Gene3D G3DSA:1.10.260.40 8 76 1.6E-8 T 14-10-2018 RY45_00610 da97b768b85bf9397b7af874788f9ad3 259 SMART SM00530 17 70 1.6E-6 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_00610 da97b768b85bf9397b7af874788f9ad3 259 Pfam PF00717 Peptidase S24-like 173 239 1.4E-8 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RY45_00610 da97b768b85bf9397b7af874788f9ad3 259 Gene3D G3DSA:2.10.109.10 136 258 3.4E-9 T 14-10-2018 RY45_00610 da97b768b85bf9397b7af874788f9ad3 259 SUPERFAMILY SSF47413 13 75 8.3E-7 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_00610 da97b768b85bf9397b7af874788f9ad3 259 SUPERFAMILY SSF51306 126 256 8.5E-22 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RY45_18015 872e0c58550e524207164288315dff5e 211 SUPERFAMILY SSF51735 2 207 1.99E-34 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_18015 872e0c58550e524207164288315dff5e 211 Pfam PF13460 NAD(P)H-binding 8 193 1.5E-36 T 14-10-2018 IPR016040 NAD(P)-binding domain RY45_18015 872e0c58550e524207164288315dff5e 211 Gene3D G3DSA:3.40.50.720 1 209 3.3E-38 T 14-10-2018 RY45_22200 9e548bb3d7ba02054de99336715895d0 254 Gene3D G3DSA:3.40.50.300 1 254 1.3E-60 T 14-10-2018 RY45_22200 9e548bb3d7ba02054de99336715895d0 254 SMART SM00382 26 214 1.9E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_22200 9e548bb3d7ba02054de99336715895d0 254 Pfam PF00005 ABC transporter 18 165 2.8E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_22200 9e548bb3d7ba02054de99336715895d0 254 SUPERFAMILY SSF52540 2 229 5.32E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12155 5e6e155c6dd345e09177b2a514a1aed7 314 Gene3D G3DSA:1.10.530.10 66 309 2.4E-85 T 14-10-2018 RY45_12155 5e6e155c6dd345e09177b2a514a1aed7 314 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 23 312 9.8E-107 T 14-10-2018 IPR011970 Lytic murein transglycosylase RY45_12155 5e6e155c6dd345e09177b2a514a1aed7 314 Pfam PF13406 Transglycosylase SLT domain 24 310 2.1E-101 T 14-10-2018 IPR031304 Transglycosylase SLT domain 2 RY45_12155 5e6e155c6dd345e09177b2a514a1aed7 314 Gene3D G3DSA:1.10.8.350 37 199 2.4E-85 T 14-10-2018 RY45_12155 5e6e155c6dd345e09177b2a514a1aed7 314 SUPERFAMILY SSF53955 8 312 1.52E-93 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_20335 92e238497539a297383ca8524fe907f6 691 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 136 159 - T 14-10-2018 IPR025505 FHIPEP conserved site RY45_20335 92e238497539a297383ca8524fe907f6 691 Gene3D G3DSA:1.10.8.540 497 584 8.5E-16 T 14-10-2018 RY45_20335 92e238497539a297383ca8524fe907f6 691 Gene3D G3DSA:3.40.30.60 353 496 2.4E-44 T 14-10-2018 RY45_20335 92e238497539a297383ca8524fe907f6 691 Pfam PF00771 FHIPEP family 20 682 1.5E-248 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_20335 92e238497539a297383ca8524fe907f6 691 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 12 689 5.8E-244 T 14-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 RY45_20335 92e238497539a297383ca8524fe907f6 691 PIRSF PIRSF005419 3 691 1.3E-234 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_20335 92e238497539a297383ca8524fe907f6 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 27 40 1.0E-53 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_20335 92e238497539a297383ca8524fe907f6 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 180 197 1.0E-53 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_20335 92e238497539a297383ca8524fe907f6 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 231 245 1.0E-53 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_20335 92e238497539a297383ca8524fe907f6 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 150 168 1.0E-53 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_20335 92e238497539a297383ca8524fe907f6 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 64 83 1.0E-53 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_20335 92e238497539a297383ca8524fe907f6 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 131 147 1.0E-53 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_20335 92e238497539a297383ca8524fe907f6 691 Gene3D G3DSA:1.10.490.80 587 690 5.6E-9 T 14-10-2018 RY45_18010 365d3d759f948236c5bbd8f8251daa75 284 Gene3D G3DSA:3.40.50.300 84 262 1.3E-24 T 14-10-2018 RY45_18010 365d3d759f948236c5bbd8f8251daa75 284 Pfam PF01695 IstB-like ATP binding protein 135 256 3.6E-13 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 RY45_18010 365d3d759f948236c5bbd8f8251daa75 284 SUPERFAMILY SSF52540 97 254 8.68E-18 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18010 365d3d759f948236c5bbd8f8251daa75 284 SMART SM00382 134 267 8.7E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 SUPERFAMILY SSF52943 2 288 1.01E-99 T 14-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 6.4E-39 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 6.4E-39 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 6.4E-39 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 6.4E-39 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 Gene3D G3DSA:3.40.1380.10 61 207 1.5E-113 T 14-10-2018 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 Gene3D G3DSA:1.10.287.80 6 284 1.5E-113 T 14-10-2018 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 274 287 - T 14-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 Pfam PF00231 ATP synthase 5 287 4.5E-100 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 288 3.4E-114 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22130 601ea9df7fa4a0795e8b587c095b33de 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 288 37.446 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_17210 553e20d62d0d4bbe171d7e499daeac1d 134 SUPERFAMILY SSF51316 2 132 3.56E-41 T 14-10-2018 IPR011057 Mss4-like superfamily RY45_17210 553e20d62d0d4bbe171d7e499daeac1d 134 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 113 5.6E-17 T 14-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 RY45_17210 553e20d62d0d4bbe171d7e499daeac1d 134 Gene3D G3DSA:2.170.150.70 4 111 4.2E-14 T 14-10-2018 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 Pfam PF13416 Bacterial extracellular solute-binding protein 47 341 2.0E-43 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 Gene3D G3DSA:3.40.190.10 135 384 1.4E-132 T 14-10-2018 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 130 147 - T 14-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 PRINTS PR00181 Maltose binding protein signature 148 167 1.3E-64 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 PRINTS PR00181 Maltose binding protein signature 354 373 1.3E-64 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 PRINTS PR00181 Maltose binding protein signature 230 249 1.3E-64 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 PRINTS PR00181 Maltose binding protein signature 168 187 1.3E-64 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 PRINTS PR00181 Maltose binding protein signature 296 317 1.3E-64 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 PRINTS PR00181 Maltose binding protein signature 67 85 1.3E-64 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 PRINTS PR00181 Maltose binding protein signature 33 51 1.3E-64 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 PRINTS PR00181 Maltose binding protein signature 127 146 1.3E-64 T 14-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 Gene3D G3DSA:3.40.190.10 47 354 1.4E-132 T 14-10-2018 RY45_09125 2b8029641e820e1d12dd709d68501fb0 393 SUPERFAMILY SSF53850 25 391 1.92E-93 T 14-10-2018 RY45_05225 fe16fbf75341610d5c41f7d593b2b5cd 810 Gene3D G3DSA:2.60.450.10 59 200 1.0E-5 T 14-10-2018 RY45_05225 fe16fbf75341610d5c41f7d593b2b5cd 810 Pfam PF04453 Organic solvent tolerance protein 320 719 1.3E-76 T 14-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 RY45_05225 fe16fbf75341610d5c41f7d593b2b5cd 810 Pfam PF03968 OstA-like protein 67 200 1.3E-14 T 14-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal RY45_05225 fe16fbf75341610d5c41f7d593b2b5cd 810 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 13 784 18.452 T 14-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 SUPERFAMILY SSF49503 434 547 6.11E-29 T 14-10-2018 IPR008972 Cupredoxin RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 Gene3D G3DSA:2.60.40.420 28 173 2.8E-45 T 14-10-2018 IPR008972 Cupredoxin RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 ProSitePatterns PS00080 Multicopper oxidases signature 2. 530 541 - T 14-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 Gene3D G3DSA:2.60.40.420 174 325 1.7E-43 T 14-10-2018 IPR008972 Cupredoxin RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 19 5.6E-4 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 Pfam PF07731 Multicopper oxidase 431 548 1.3E-25 T 14-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 Pfam PF07732 Multicopper oxidase 56 165 2.7E-32 T 14-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 SUPERFAMILY SSF49503 32 167 2.57E-32 T 14-10-2018 IPR008972 Cupredoxin RY45_18430 893dcea12a4c6b9c74086d8beb01677e 549 SUPERFAMILY SSF49503 170 294 1.08E-29 T 14-10-2018 IPR008972 Cupredoxin RY45_00805 4353a72e2ffa5852bfd4bb9a0c277b61 107 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 31.264 T 14-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 RY45_00805 4353a72e2ffa5852bfd4bb9a0c277b61 107 SUPERFAMILY SSF52821 1 99 1.31E-29 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_00805 4353a72e2ffa5852bfd4bb9a0c277b61 107 Pfam PF00581 Rhodanese-like domain 8 98 3.4E-15 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_00805 4353a72e2ffa5852bfd4bb9a0c277b61 107 SMART SM00450 7 102 3.0E-21 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_00805 4353a72e2ffa5852bfd4bb9a0c277b61 107 Gene3D G3DSA:3.40.250.10 1 105 4.9E-29 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_16145 511d278847a7335b36f4dd5b2bb98612 140 Pfam PF03652 Holliday junction resolvase 5 136 1.0E-40 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RY45_16145 511d278847a7335b36f4dd5b2bb98612 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 5.4E-53 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RY45_16145 511d278847a7335b36f4dd5b2bb98612 140 SUPERFAMILY SSF53098 5 137 2.88E-42 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_16145 511d278847a7335b36f4dd5b2bb98612 140 SMART SM00732 4 104 3.6E-42 T 14-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 RY45_16145 511d278847a7335b36f4dd5b2bb98612 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 25.59 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RY45_16145 511d278847a7335b36f4dd5b2bb98612 140 Gene3D G3DSA:3.30.420.140 3 139 3.6E-44 T 14-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 RY45_20655 e1b4b65d43b8272745b4e487afdfb078 659 SUPERFAMILY SSF58104 350 659 4.97E-70 T 14-10-2018 RY45_20655 e1b4b65d43b8272745b4e487afdfb078 659 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 130 4.2E-11 T 14-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RY45_20655 e1b4b65d43b8272745b4e487afdfb078 659 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 445 625 1.1E-41 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_20655 e1b4b65d43b8272745b4e487afdfb078 659 Gene3D G3DSA:1.10.287.950 329 659 2.1E-67 T 14-10-2018 RY45_20655 e1b4b65d43b8272745b4e487afdfb078 659 SMART SM00283 397 658 2.8E-73 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_20655 e1b4b65d43b8272745b4e487afdfb078 659 SMART SM00304 330 382 0.005 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_03130 197c7ef856c634225dae8dd0174d979a 458 Pfam PF03880 DbpA RNA binding domain 385 455 2.3E-23 T 14-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain RY45_03130 197c7ef856c634225dae8dd0174d979a 458 SUPERFAMILY SSF52540 72 357 6.32E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03130 197c7ef856c634225dae8dd0174d979a 458 Gene3D G3DSA:3.40.50.300 213 388 3.0E-46 T 14-10-2018 RY45_03130 197c7ef856c634225dae8dd0174d979a 458 Gene3D G3DSA:3.30.70.330 389 457 6.9E-22 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RY45_03130 197c7ef856c634225dae8dd0174d979a 458 Pfam PF00270 DEAD/DEAH box helicase 27 191 2.9E-44 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_03130 197c7ef856c634225dae8dd0174d979a 458 SMART SM00487 22 219 1.8E-51 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_03130 197c7ef856c634225dae8dd0174d979a 458 Pfam PF00271 Helicase conserved C-terminal domain 236 336 5.8E-26 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_03130 197c7ef856c634225dae8dd0174d979a 458 Gene3D G3DSA:3.40.50.300 3 209 9.2E-71 T 14-10-2018 RY45_03130 197c7ef856c634225dae8dd0174d979a 458 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_03130 197c7ef856c634225dae8dd0174d979a 458 SMART SM00490 255 336 1.4E-27 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_04905 5b258b632a2f18469f096569b4db1967 465 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 464 6.0E-257 T 14-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 Gene3D G3DSA:3.30.499.10 324 465 3.6E-51 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 133 148 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 82 95 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 399 412 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 108 116 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 119 132 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 209 222 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 286 300 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 195 208 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 PRINTS PR00415 Aconitase family signature 343 354 5.7E-49 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 SUPERFAMILY SSF53732 2 464 1.7E-166 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 Pfam PF00330 Aconitase family (aconitate hydratase) 7 457 3.4E-159 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RY45_04905 5b258b632a2f18469f096569b4db1967 465 Gene3D G3DSA:3.30.499.20 4 286 1.7E-97 T 14-10-2018 RY45_04905 5b258b632a2f18469f096569b4db1967 465 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 465 60.139 T 14-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 RY45_15175 d76f2cfafe76b51abaefbb1b2e71fa86 367 Pfam PF02698 DUF218 domain 196 311 4.1E-19 T 14-10-2018 IPR003848 Domain of unknown function DUF218 RY45_15175 d76f2cfafe76b51abaefbb1b2e71fa86 367 SUPERFAMILY SSF48452 68 162 2.09E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_15175 d76f2cfafe76b51abaefbb1b2e71fa86 367 Gene3D G3DSA:1.25.40.10 67 177 2.4E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_11055 d78d0463259dfdf2d350d19781bb1de0 126 SUPERFAMILY SSF54593 6 120 6.98E-20 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_11055 d78d0463259dfdf2d350d19781bb1de0 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 30 3.0E-4 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_11055 d78d0463259dfdf2d350d19781bb1de0 126 Gene3D G3DSA:3.10.180.10 5 121 1.1E-23 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_18090 8e705c32f1516ed1f23010ef565ce005 428 Gene3D G3DSA:3.90.1150.10 7 418 1.0E-179 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_18090 8e705c32f1516ed1f23010ef565ce005 428 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_18090 8e705c32f1516ed1f23010ef565ce005 428 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 5.8E-194 T 14-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RY45_18090 8e705c32f1516ed1f23010ef565ce005 428 SUPERFAMILY SSF53383 2 425 2.5E-139 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_18090 8e705c32f1516ed1f23010ef565ce005 428 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 105.669 T 14-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RY45_18090 8e705c32f1516ed1f23010ef565ce005 428 Gene3D G3DSA:3.40.640.10 69 317 1.0E-179 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_18090 8e705c32f1516ed1f23010ef565ce005 428 Pfam PF00202 Aminotransferase class-III 33 395 1.8E-77 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_20080 f2648405e1b6e0b003b48c1f0a1b49fe 301 Pfam PF01551 Peptidase family M23 198 292 3.1E-30 T 14-10-2018 IPR016047 Peptidase M23 RY45_20080 f2648405e1b6e0b003b48c1f0a1b49fe 301 Gene3D G3DSA:2.70.70.10 135 300 6.3E-44 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_20080 f2648405e1b6e0b003b48c1f0a1b49fe 301 SUPERFAMILY SSF51261 158 296 2.98E-52 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_10525 aeb8956ae97386602fa7169eab0c6b35 151 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_10525 aeb8956ae97386602fa7169eab0c6b35 151 Pfam PF00293 NUDIX domain 10 129 5.6E-19 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_10525 aeb8956ae97386602fa7169eab0c6b35 151 Gene3D G3DSA:3.90.79.10 7 136 2.6E-24 T 14-10-2018 RY45_10525 aeb8956ae97386602fa7169eab0c6b35 151 SUPERFAMILY SSF55811 6 136 4.33E-26 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 Pfam PF00551 Formyl transferase 82 259 2.2E-46 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 SUPERFAMILY SSF55021 4 65 8.33E-8 T 14-10-2018 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 PIRSF PIRSF036480 1 278 4.2E-114 T 14-10-2018 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 Gene3D G3DSA:3.30.70.260 1 78 1.5E-15 T 14-10-2018 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 83 105 2.9E-65 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 251 276 2.9E-65 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 229 251 2.9E-65 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 2.9E-65 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 105 132 2.9E-65 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 2.9E-65 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 Gene3D G3DSA:3.40.50.170 81 278 6.9E-66 T 14-10-2018 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 277 45.977 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 4 277 4.2E-124 T 14-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 Pfam PF01842 ACT domain 5 66 8.9E-8 T 14-10-2018 IPR002912 ACT domain RY45_06980 60e45f387803ac7f915fc08bf686a6ab 278 SUPERFAMILY SSF53328 82 278 1.7E-58 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_08425 00f71a2fa303b3082ddd3bcd33313b3e 92 Pfam PF00639 PPIC-type PPIASE domain 13 88 3.7E-18 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 RY45_08425 00f71a2fa303b3082ddd3bcd33313b3e 92 SUPERFAMILY SSF54534 3 89 9.81E-25 T 14-10-2018 RY45_08425 00f71a2fa303b3082ddd3bcd33313b3e 92 Gene3D G3DSA:3.10.50.40 1 92 3.8E-32 T 14-10-2018 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 SUPERFAMILY SSF53623 94 310 7.85E-50 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 Pfam PF01225 Mur ligase family, catalytic domain 2 99 3.0E-19 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 360 1.7E-8 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 SUPERFAMILY SSF51984 1 90 5.1E-25 T 14-10-2018 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 SUPERFAMILY SSF53244 312 448 6.93E-40 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 Gene3D G3DSA:3.90.190.20 315 451 2.3E-32 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 Gene3D G3DSA:3.40.50.720 1 90 9.9E-38 T 14-10-2018 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 Gene3D G3DSA:3.40.1190.10 93 311 1.7E-52 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 59.962 T 14-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 Pfam PF08245 Mur ligase middle domain 108 292 6.6E-20 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RY45_18250 4a57f3b01cfdcb03cabb211da82d9302 456 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 450 6.5E-233 T 14-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 RY45_15350 4b55acec7fa72ddf4735afc986920fd5 105 SMART SM00418 16 94 1.3E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_15350 4b55acec7fa72ddf4735afc986920fd5 105 Pfam PF01022 Bacterial regulatory protein, arsR family 23 69 5.4E-10 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_15350 4b55acec7fa72ddf4735afc986920fd5 105 SUPERFAMILY SSF46785 7 98 1.9E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_15350 4b55acec7fa72ddf4735afc986920fd5 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 50 65 1.8E-9 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_15350 4b55acec7fa72ddf4735afc986920fd5 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 65 80 1.8E-9 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_15350 4b55acec7fa72ddf4735afc986920fd5 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 1.8E-9 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_15350 4b55acec7fa72ddf4735afc986920fd5 105 Gene3D G3DSA:1.10.10.10 3 103 2.7E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 SUPERFAMILY SSF56059 673 933 1.2E-104 T 14-10-2018 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Gene3D G3DSA:3.40.50.20 554 662 1.1E-49 T 14-10-2018 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 SMART SM01096 424 547 1.5E-75 T 14-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 SUPERFAMILY SSF48108 397 554 2.35E-52 T 14-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.4E-71 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 875 6.8E-38 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 SUPERFAMILY SSF52335 935 1071 6.28E-36 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 5.6E-40 T 14-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Gene3D G3DSA:1.10.1030.10 404 553 9.9E-52 T 14-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 SMART SM00851 955 1041 9.9E-28 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 SUPERFAMILY SSF56059 128 401 6.01E-109 T 14-10-2018 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Gene3D G3DSA:3.40.50.1380 937 1072 5.6E-35 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 SUPERFAMILY SSF52440 556 675 9.35E-50 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1052 0.0 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 SUPERFAMILY SSF52440 1 127 4.89E-50 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Gene3D G3DSA:3.30.470.20 119 403 1.2E-128 T 14-10-2018 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Gene3D G3DSA:3.30.470.20 665 935 4.4E-125 T 14-10-2018 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.447 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Gene3D G3DSA:3.40.50.20 1 116 3.1E-50 T 14-10-2018 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Pfam PF02142 MGS-like domain 956 1041 2.5E-16 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.2E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.2E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.2E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.2E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.2E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.2E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.2E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.19 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14325 094840b98eecd68bc335c09cf0ddcc4a 1078 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Gene3D G3DSA:3.30.1330.10 625 814 1.6E-22 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1046 1297 3.3E-102 T 14-10-2018 RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Gene3D G3DSA:3.40.50.880 987 1301 2.4E-136 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Gene3D G3DSA:3.30.1330.10 218 424 1.6E-42 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 SUPERFAMILY SSF52317 1042 1297 3.96E-95 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 SUPERFAMILY SSF55326 225 432 1.29E-64 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Gene3D G3DSA:1.10.8.750 157 217 3.4E-27 T 14-10-2018 RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 SUPERFAMILY SSF55326 623 820 2.09E-67 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 SUPERFAMILY SSF56042 436 619 4.34E-54 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1301 21.421 T 14-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Gene3D G3DSA:3.90.650.10 815 986 6.3E-32 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 SUPERFAMILY SSF56042 831 1039 1.79E-56 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1298 0.0 T 14-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Gene3D G3DSA:3.90.650.10 425 610 4.2E-54 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Pfam PF02769 AIR synthase related protein, C-terminal domain 436 593 1.9E-29 T 14-10-2018 IPR010918 PurM-like, C-terminal domain RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 Pfam PF02769 AIR synthase related protein, C-terminal domain 841 968 9.1E-14 T 14-10-2018 IPR010918 PurM-like, C-terminal domain RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 SUPERFAMILY SSF82697 2 156 3.66E-50 T 14-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 SMART SM01211 1045 1300 1.2E-152 T 14-10-2018 RY45_09625 349c1e9c27912e69957114ee1fe264b0 1301 SUPERFAMILY SSF109736 159 224 1.44E-21 T 14-10-2018 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 SUPERFAMILY SSF102886 4 302 4.97E-140 T 14-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 277 56.804 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 PRINTS PR00073 Coprogen oxidase signature 262 288 9.2E-87 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 PRINTS PR00073 Coprogen oxidase signature 90 114 9.2E-87 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 PRINTS PR00073 Coprogen oxidase signature 31 47 9.2E-87 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 PRINTS PR00073 Coprogen oxidase signature 48 69 9.2E-87 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 PRINTS PR00073 Coprogen oxidase signature 162 191 9.2E-87 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 PRINTS PR00073 Coprogen oxidase signature 234 261 9.2E-87 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 PRINTS PR00073 Coprogen oxidase signature 125 147 9.2E-87 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 166 190 - T 14-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 PIRSF PIRSF000166 2 302 9.5E-127 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 Gene3D G3DSA:3.40.1500.10 1 302 3.5E-138 T 14-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01605 8d9ce40edb46c2f5fe8587b92031379e 302 Pfam PF01218 Coproporphyrinogen III oxidase 8 302 1.4E-132 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 Gene3D G3DSA:3.40.50.2300 77 312 8.8E-46 T 14-10-2018 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 SMART SM00354 1 72 1.5E-12 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 Gene3D G3DSA:1.10.260.40 1 47 1.0E-16 T 14-10-2018 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 SUPERFAMILY SSF47413 1 52 2.01E-11 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 49 5.1E-16 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 SUPERFAMILY SSF53822 74 314 6.48E-45 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 Gene3D G3DSA:3.40.50.2300 155 314 8.8E-46 T 14-10-2018 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 Pfam PF13377 Periplasmic binding protein-like domain 163 320 3.2E-35 T 14-10-2018 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.0E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_01305 b84039b4116f6a00f4dc950824c9273f 321 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.0E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 SUPERFAMILY SSF46785 4 87 2.45E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.0E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.0E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.0E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 Gene3D G3DSA:3.40.190.290 94 274 2.2E-29 T 14-10-2018 RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.6E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 SUPERFAMILY SSF53850 90 292 1.71E-33 T 14-10-2018 RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 Pfam PF03466 LysR substrate binding domain 90 291 3.6E-27 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_04445 bdafbb9071ed93a00282a9f58f2cf795 292 Gene3D G3DSA:1.10.10.10 1 84 4.5E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16205 efcb8aecbfb4a6c72fbb739d2cb3acde 182 Gene3D G3DSA:1.20.120.520 1 176 1.1E-19 T 14-10-2018 RY45_16205 efcb8aecbfb4a6c72fbb739d2cb3acde 182 Pfam PF01814 Hemerythrin HHE cation binding domain 3 135 3.9E-10 T 14-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 367 521 3.6E-41 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 Gene3D G3DSA:1.10.287.950 224 555 7.7E-75 T 14-10-2018 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 Pfam PF00672 HAMP domain 225 274 1.1E-11 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 SUPERFAMILY SSF58104 246 555 1.44E-77 T 14-10-2018 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 SMART SM01049 42 131 4.1E-28 T 14-10-2018 IPR033480 Single Cache domain 2 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 SMART SM00304 224 278 5.9E-15 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 SMART SM00283 279 554 7.2E-75 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 420 449 1.6E-22 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 418 1.6E-22 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 315 344 1.6E-22 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 Gene3D G3DSA:3.30.450.20 27 202 1.3E-42 T 14-10-2018 RY45_10590 cb2098d887af652bb2f3a581877187aa 555 Pfam PF17200 Single Cache domain 2 46 188 3.3E-32 T 14-10-2018 IPR033480 Single Cache domain 2 RY45_10010 5488103b317674347e0178343c38baf2 415 SMART SM00267 243 411 4.8E-57 T 14-10-2018 IPR000160 GGDEF domain RY45_10010 5488103b317674347e0178343c38baf2 415 SUPERFAMILY SSF52172 122 259 1.85E-28 T 14-10-2018 IPR011006 CheY-like superfamily RY45_10010 5488103b317674347e0178343c38baf2 415 Gene3D G3DSA:3.40.50.2300 122 252 1.6E-29 T 14-10-2018 RY45_10010 5488103b317674347e0178343c38baf2 415 SMART SM00448 123 237 2.4E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10010 5488103b317674347e0178343c38baf2 415 SMART SM00448 3 111 1.5E-11 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10010 5488103b317674347e0178343c38baf2 415 Pfam PF00990 Diguanylate cyclase, GGDEF domain 254 406 2.5E-35 T 14-10-2018 IPR000160 GGDEF domain RY45_10010 5488103b317674347e0178343c38baf2 415 Gene3D G3DSA:3.40.50.2300 1 121 2.1E-24 T 14-10-2018 RY45_10010 5488103b317674347e0178343c38baf2 415 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 251 410 1.5E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_10010 5488103b317674347e0178343c38baf2 415 Pfam PF00072 Response regulator receiver domain 5 104 1.0E-9 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10010 5488103b317674347e0178343c38baf2 415 Pfam PF00072 Response regulator receiver domain 125 236 1.0E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10010 5488103b317674347e0178343c38baf2 415 SUPERFAMILY SSF55073 259 411 3.3E-39 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_10010 5488103b317674347e0178343c38baf2 415 SUPERFAMILY SSF52172 2 112 2.85E-17 T 14-10-2018 IPR011006 CheY-like superfamily RY45_10010 5488103b317674347e0178343c38baf2 415 Gene3D G3DSA:3.30.70.270 253 414 1.3E-44 T 14-10-2018 RY45_22225 77954c2c65a6f81bf59d5f707a45a465 119 Pfam PF00825 Ribonuclease P 7 113 2.5E-33 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RY45_22225 77954c2c65a6f81bf59d5f707a45a465 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 106 4.0E-27 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RY45_22225 77954c2c65a6f81bf59d5f707a45a465 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 7 114 1.3E-29 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RY45_22225 77954c2c65a6f81bf59d5f707a45a465 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 7 116 17.854 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RY45_22225 77954c2c65a6f81bf59d5f707a45a465 119 SUPERFAMILY SSF54211 6 118 9.61E-31 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_22225 77954c2c65a6f81bf59d5f707a45a465 119 Gene3D G3DSA:3.30.230.10 3 119 5.1E-41 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_22225 77954c2c65a6f81bf59d5f707a45a465 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 14-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 RY45_19100 b12c578df23ed8e07c667a3c04820284 696 Pfam PF12571 Phage tail-collar fibre protein 3 160 3.2E-27 T 14-10-2018 IPR022225 Phage tail fibre protein RY45_13040 a165cacdc8a73fcc2b4759c4170a84cd 372 Gene3D G3DSA:1.10.10.2140 318 369 5.6E-24 T 14-10-2018 RY45_13040 a165cacdc8a73fcc2b4759c4170a84cd 372 Pfam PF01924 Hydrogenase formation hypA family 16 366 1.2E-149 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 RY45_13040 a165cacdc8a73fcc2b4759c4170a84cd 372 Gene3D G3DSA:3.40.50.11750 21 263 6.4E-104 T 14-10-2018 RY45_13040 a165cacdc8a73fcc2b4759c4170a84cd 372 Gene3D G3DSA:3.40.50.11740 66 304 6.4E-104 T 14-10-2018 RY45_13040 a165cacdc8a73fcc2b4759c4170a84cd 372 PIRSF PIRSF005622 5 372 8.5E-157 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 RY45_13040 a165cacdc8a73fcc2b4759c4170a84cd 372 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 9 369 1.4E-149 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 RY45_08285 61e8801a4185b3d3a5515489368feee4 538 Pfam PF00884 Sulfatase 231 520 5.1E-47 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RY45_08285 61e8801a4185b3d3a5515489368feee4 538 Gene3D G3DSA:3.40.720.10 218 538 2.1E-84 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_08285 61e8801a4185b3d3a5515489368feee4 538 Pfam PF08019 Domain of unknown function (DUF1705) 52 201 2.4E-49 T 14-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 RY45_08285 61e8801a4185b3d3a5515489368feee4 538 SUPERFAMILY SSF53649 264 522 4.11E-21 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_10445 db5e7bd680d0eedd0785d16ea9930d63 212 Gene3D G3DSA:3.40.50.720 2 211 3.4E-50 T 14-10-2018 RY45_10445 db5e7bd680d0eedd0785d16ea9930d63 212 SUPERFAMILY SSF51735 1 211 1.54E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_10445 db5e7bd680d0eedd0785d16ea9930d63 212 Pfam PF13460 NAD(P)H-binding 7 199 2.8E-28 T 14-10-2018 IPR016040 NAD(P)-binding domain RY45_14675 30a65c67f13d78bfb04a30219c0987a8 196 Gene3D G3DSA:1.10.3820.10 13 193 3.8E-37 T 14-10-2018 IPR038266 NapC/NirT cytochrome c superfamily RY45_14675 30a65c67f13d78bfb04a30219c0987a8 196 PIRSF PIRSF000013 1 196 1.4E-99 T 14-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 RY45_14675 30a65c67f13d78bfb04a30219c0987a8 196 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 18 190 4.0E-76 T 14-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal RY45_14675 30a65c67f13d78bfb04a30219c0987a8 196 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 7 191 1.0E-97 T 14-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 RY45_14675 30a65c67f13d78bfb04a30219c0987a8 196 SUPERFAMILY SSF48695 14 194 1.25E-59 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 3.4E-60 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 SUPERFAMILY SSF81338 2 224 2.75E-67 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 PRINTS PR00783 Major intrinsic protein family signature 42 66 1.6E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 PRINTS PR00783 Major intrinsic protein family signature 79 98 1.6E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 PRINTS PR00783 Major intrinsic protein family signature 135 153 1.6E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 PRINTS PR00783 Major intrinsic protein family signature 2 21 1.6E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 PRINTS PR00783 Major intrinsic protein family signature 165 187 1.6E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 PRINTS PR00783 Major intrinsic protein family signature 204 224 1.6E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 Pfam PF00230 Major intrinsic protein 2 221 1.4E-50 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 Gene3D G3DSA:1.20.1080.10 1 228 8.8E-84 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 ProSitePatterns PS00221 MIP family signature. 60 68 - T 14-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 RY45_06940 2b4f7bb9c9411835fc4d4c80e0c78a44 228 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 36.044 T 14-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 RY45_15820 4ed983a6a89999ecfc717779f1699e2c 67 TIGRFAM TIGR02811 formate_TAT: formate dehydrogenase region TAT target 1 63 3.5E-27 T 14-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing RY45_15820 4ed983a6a89999ecfc717779f1699e2c 67 PIRSF PIRSF036704 1 65 1.2E-11 T 14-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 Gene3D G3DSA:3.40.1060.10 385 681 3.0E-150 T 14-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 SUPERFAMILY SSF74778 2 160 1.57E-65 T 14-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 PIRSF PIRSF036687 1 859 0.0 T 14-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 Gene3D G3DSA:3.30.499.10 683 865 7.0E-71 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 Gene3D G3DSA:1.25.40.310 1 161 3.3E-68 T 14-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 2.9E-41 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 Pfam PF11791 Aconitate B N-terminal domain 5 156 4.0E-64 T 14-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 853 0.0 T 14-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 Gene3D G3DSA:3.30.499.10 402 529 3.0E-150 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 SUPERFAMILY SSF52016 162 372 8.63E-72 T 14-10-2018 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 Gene3D G3DSA:3.20.19.10 162 361 5.3E-78 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 1.7E-98 T 14-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RY45_19970 0c9da912e76c86d4a950bb9fe2abfb74 865 SUPERFAMILY SSF53732 379 859 5.62E-151 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RY45_07300 2ee496315e3841da8c29265c741cff71 371 Gene3D G3DSA:3.40.50.180 176 370 2.2E-67 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal RY45_07300 2ee496315e3841da8c29265c741cff71 371 SUPERFAMILY SSF52738 181 366 8.76E-65 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal RY45_07300 2ee496315e3841da8c29265c741cff71 371 Pfam PF01339 CheB methylesterase 186 365 6.4E-60 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_07300 2ee496315e3841da8c29265c741cff71 371 PIRSF PIRSF000876 1 371 2.1E-129 T 14-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_07300 2ee496315e3841da8c29265c741cff71 371 Gene3D G3DSA:3.40.50.2300 2 135 5.6E-31 T 14-10-2018 RY45_07300 2ee496315e3841da8c29265c741cff71 371 SMART SM00448 3 126 4.7E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_07300 2ee496315e3841da8c29265c741cff71 371 Pfam PF00072 Response regulator receiver domain 5 109 8.8E-22 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_07300 2ee496315e3841da8c29265c741cff71 371 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 370 39.31 T 14-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_07300 2ee496315e3841da8c29265c741cff71 371 SUPERFAMILY SSF52172 3 109 1.42E-26 T 14-10-2018 IPR011006 CheY-like superfamily RY45_16350 ce40a2c300fa9cebf8b61088196c9eec 105 Gene3D G3DSA:2.30.130.30 2 104 1.0E-40 T 14-10-2018 RY45_16350 ce40a2c300fa9cebf8b61088196c9eec 105 SUPERFAMILY SSF88697 4 103 3.31E-32 T 14-10-2018 IPR015947 PUA-like superfamily RY45_16350 ce40a2c300fa9cebf8b61088196c9eec 105 Pfam PF04266 ASCH domain 8 103 6.7E-17 T 14-10-2018 IPR007374 ASCH domain RY45_16350 ce40a2c300fa9cebf8b61088196c9eec 105 PIRSF PIRSF029143 2 105 2.2E-39 T 14-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 RY45_16350 ce40a2c300fa9cebf8b61088196c9eec 105 SMART SM01022 7 105 1.2E-31 T 14-10-2018 IPR007374 ASCH domain RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 Gene3D G3DSA:3.20.20.210 6 518 0.0 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 SUPERFAMILY SSF51726 4 378 1.7E-109 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 SUPERFAMILY SSF51726 390 751 1.7E-117 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 311 5.8E-121 T 14-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 425 747 1.7E-151 T 14-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 752 36.579 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 752 0.0 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 Gene3D G3DSA:3.20.20.210 383 750 0.0 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RY45_10480 9c4e65ac45e1e611624de627057fd65a 754 PIRSF PIRSF000382 1 754 0.0 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Pfam PF12838 4Fe-4S dicluster domain 694 764 3.3E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 271 351 1.5E-12 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Gene3D G3DSA:3.40.50.970 802 1183 1.3E-151 T 14-10-2018 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 SMART SM00890 628 684 5.1E-22 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 PIRSF PIRSF000159 1 1188 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Pfam PF10371 Domain of unknown function 640 683 1.1E-17 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 969 1081 1.6E-10 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 5 1180 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Gene3D G3DSA:3.40.920.10 422 630 1.1E-72 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Gene3D G3DSA:3.40.50.970 3 258 6.3E-107 T 14-10-2018 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 17 248 2.7E-85 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 SUPERFAMILY SSF52518 4 258 3.92E-77 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Gene3D G3DSA:3.40.50.920 259 416 1.0E-51 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 SUPERFAMILY SSF52518 803 1184 1.74E-128 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Gene3D G3DSA:3.30.70.20 674 799 9.6E-32 T 14-10-2018 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 431 612 5.9E-26 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 SUPERFAMILY SSF54862 670 847 5.02E-21 T 14-10-2018 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 SUPERFAMILY SSF52922 260 419 2.04E-38 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 SUPERFAMILY SSF53323 423 673 6.54E-70 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RY45_08155 488271a22300dc3b42bc68aabcd1b940 1191 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 750 761 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13810 92b90a85b4267de2e53d9a3abb2a3148 222 Gene3D G3DSA:3.40.50.1000 21 209 4.9E-8 T 14-10-2018 IPR023214 HAD superfamily RY45_13810 92b90a85b4267de2e53d9a3abb2a3148 222 SUPERFAMILY SSF56784 17 202 3.02E-9 T 14-10-2018 IPR036412 HAD-like superfamily RY45_13810 92b90a85b4267de2e53d9a3abb2a3148 222 Pfam PF12710 haloacid dehalogenase-like hydrolase 18 189 8.9E-18 T 14-10-2018 RY45_13810 92b90a85b4267de2e53d9a3abb2a3148 222 Gene3D G3DSA:1.20.1440.100 29 99 4.9E-8 T 14-10-2018 RY45_04200 f261fe70cbb8bfc46eb2cc372fdd229b 223 Pfam PF03783 Curli production assembly/transport component CsgG 43 220 1.6E-32 T 14-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 RY45_04200 f261fe70cbb8bfc46eb2cc372fdd229b 223 SUPERFAMILY SSF52964 46 143 1.31E-9 T 14-10-2018 RY45_06585 6edeb4f3c9d75ddbbf38ffce164af350 169 PIRSF PIRSF000368 1 163 1.1E-56 T 14-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 RY45_06585 6edeb4f3c9d75ddbbf38ffce164af350 169 Pfam PF13353 4Fe-4S single cluster domain 12 151 4.4E-49 T 14-10-2018 RY45_06585 6edeb4f3c9d75ddbbf38ffce164af350 169 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 3 153 1.8E-59 T 14-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 RY45_06585 6edeb4f3c9d75ddbbf38ffce164af350 169 SUPERFAMILY SSF102114 12 111 9.03E-7 T 14-10-2018 RY45_06585 6edeb4f3c9d75ddbbf38ffce164af350 169 Gene3D G3DSA:3.20.20.70 2 166 4.2E-20 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_06585 6edeb4f3c9d75ddbbf38ffce164af350 169 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 14-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 RY45_06060 585583a0757a5d37963fbc28b13d0fbf 315 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 193 315 3.3E-37 T 14-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain RY45_06060 585583a0757a5d37963fbc28b13d0fbf 315 Gene3D G3DSA:3.40.50.720 20 191 6.5E-39 T 14-10-2018 RY45_06060 585583a0757a5d37963fbc28b13d0fbf 315 SUPERFAMILY SSF48179 193 315 1.02E-35 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_06060 585583a0757a5d37963fbc28b13d0fbf 315 SUPERFAMILY SSF51735 20 190 3.15E-42 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_06060 585583a0757a5d37963fbc28b13d0fbf 315 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 22 314 1.0E-72 T 14-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 RY45_06060 585583a0757a5d37963fbc28b13d0fbf 315 Pfam PF02558 Ketopantoate reductase PanE/ApbA 22 167 4.2E-28 T 14-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain RY45_06060 585583a0757a5d37963fbc28b13d0fbf 315 Gene3D G3DSA:1.10.1040.10 192 315 3.7E-42 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 Pfam PF00271 Helicase conserved C-terminal domain 231 339 4.0E-26 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 SMART SM00490 258 339 3.7E-29 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 SUPERFAMILY SSF52540 74 360 1.7E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 Gene3D G3DSA:3.40.50.300 1 210 2.8E-75 T 14-10-2018 RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 457 50.099 T 14-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 Pfam PF00270 DEAD/DEAH box helicase 26 195 1.8E-46 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 SMART SM00487 20 222 1.4E-61 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_11100 a558374d7027c6f60dd732ec61f3e2d6 461 Gene3D G3DSA:3.40.50.300 214 403 2.7E-46 T 14-10-2018 RY45_15250 7cbe28424e4ece712d8470b2c7b9f9a9 146 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 21 145 8.3E-24 T 14-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 RY45_15250 7cbe28424e4ece712d8470b2c7b9f9a9 146 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 26 144 2.0E-42 T 14-10-2018 RY45_15250 7cbe28424e4ece712d8470b2c7b9f9a9 146 Gene3D G3DSA:2.60.40.420 20 146 8.8E-45 T 14-10-2018 IPR008972 Cupredoxin RY45_15250 7cbe28424e4ece712d8470b2c7b9f9a9 146 SUPERFAMILY SSF49503 21 145 2.55E-44 T 14-10-2018 IPR008972 Cupredoxin RY45_15250 7cbe28424e4ece712d8470b2c7b9f9a9 146 TIGRFAM TIGR02695 azurin: azurin 22 145 1.0E-56 T 14-10-2018 IPR014068 Azurin RY45_12130 c07b23ba594032417a1502e758692f05 131 Gene3D G3DSA:1.10.1660.10 1 127 2.1E-27 T 14-10-2018 RY45_12130 c07b23ba594032417a1502e758692f05 131 Pfam PF13411 MerR HTH family regulatory protein 11 76 6.0E-17 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_12130 c07b23ba594032417a1502e758692f05 131 SMART SM00422 11 78 2.1E-19 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_12130 c07b23ba594032417a1502e758692f05 131 SUPERFAMILY SSF46955 11 125 1.54E-25 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_22165 2adc75c11a085f8af77c5418c3f227aa 302 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 43 218 5.0E-56 T 14-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RY45_22165 2adc75c11a085f8af77c5418c3f227aa 302 Gene3D G3DSA:3.90.1530.30 59 122 9.8E-27 T 14-10-2018 RY45_22165 2adc75c11a085f8af77c5418c3f227aa 302 SMART SM00470 46 136 2.0E-32 T 14-10-2018 IPR003115 ParB/Sulfiredoxin RY45_22165 2adc75c11a085f8af77c5418c3f227aa 302 Gene3D G3DSA:1.10.10.2830 123 236 9.3E-36 T 14-10-2018 RY45_22165 2adc75c11a085f8af77c5418c3f227aa 302 Pfam PF02195 ParB-like nuclease domain 48 136 4.7E-26 T 14-10-2018 IPR003115 ParB/Sulfiredoxin RY45_22165 2adc75c11a085f8af77c5418c3f227aa 302 SUPERFAMILY SSF110849 45 181 1.67E-35 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RY45_09510 357b3c9bb41eb7a9952d5c719959874c 179 Pfam PF02036 SCP-2 sterol transfer family 35 134 1.0E-20 T 14-10-2018 IPR003033 SCP2 sterol-binding domain RY45_09510 357b3c9bb41eb7a9952d5c719959874c 179 PIRSF PIRSF025550 1 174 7.9E-71 T 14-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT RY45_09510 357b3c9bb41eb7a9952d5c719959874c 179 SUPERFAMILY SSF55718 27 139 8.24E-22 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RY45_09510 357b3c9bb41eb7a9952d5c719959874c 179 Gene3D G3DSA:3.30.1050.10 37 137 2.0E-8 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RY45_12680 349d886c4eeaa20eb49e0602fa6df5ab 155 SUPERFAMILY SSF53254 1 146 1.09E-21 T 14-10-2018 IPR029033 Histidine phosphatase superfamily RY45_12680 349d886c4eeaa20eb49e0602fa6df5ab 155 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 69 6.5E-9 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_12680 349d886c4eeaa20eb49e0602fa6df5ab 155 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 150 3.5E-37 T 14-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 RY45_12680 349d886c4eeaa20eb49e0602fa6df5ab 155 SMART SM00855 2 115 1.2E-4 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_12680 349d886c4eeaa20eb49e0602fa6df5ab 155 Gene3D G3DSA:3.40.50.1240 1 155 9.4E-37 T 14-10-2018 IPR029033 Histidine phosphatase superfamily RY45_20585 dc1f775d56115e48216aa944e622d066 181 PIRSF PIRSF016183 5 180 4.4E-61 T 14-10-2018 IPR006839 Ribosome-associated, YjgA RY45_20585 dc1f775d56115e48216aa944e622d066 181 Gene3D G3DSA:1.10.60.30 31 107 1.7E-21 T 14-10-2018 RY45_20585 dc1f775d56115e48216aa944e622d066 181 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 10 178 22.029 T 14-10-2018 IPR006839 Ribosome-associated, YjgA RY45_20585 dc1f775d56115e48216aa944e622d066 181 Gene3D G3DSA:1.10.60.30 109 180 6.8E-27 T 14-10-2018 RY45_20585 dc1f775d56115e48216aa944e622d066 181 SUPERFAMILY SSF158710 32 177 7.06E-50 T 14-10-2018 IPR023153 PSPTO4464-like domain superfamily RY45_20585 dc1f775d56115e48216aa944e622d066 181 Pfam PF04751 Protein of unknown function (DUF615) 22 174 1.3E-54 T 14-10-2018 IPR006839 Ribosome-associated, YjgA RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 Gene3D G3DSA:3.40.1020.10 329 506 1.7E-67 T 14-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 SUPERFAMILY SSF55021 411 504 2.15E-25 T 14-10-2018 RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 44 57 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 419 504 8.8E-23 T 14-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 320 410 1.6E-22 T 14-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 6 504 4.8E-238 T 14-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 SUPERFAMILY SSF53686 16 355 9.3E-104 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 Gene3D G3DSA:3.40.50.1100 16 318 3.1E-132 T 14-10-2018 RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 307 3.1E-84 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_21815 8297bec94dd31f0904fcbc1c93eed3ae 506 Gene3D G3DSA:3.40.50.1100 52 148 3.1E-132 T 14-10-2018 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 Pfam PF13176 Tetratricopeptide repeat 71 97 0.028 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 Gene3D G3DSA:1.25.40.10 175 355 4.3E-12 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 386 36.384 T 14-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 Gene3D G3DSA:1.25.40.10 37 174 8.7E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 SUPERFAMILY SSF48452 35 312 7.59E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 SMART SM00028 69 102 43.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 SMART SM00028 213 246 2.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 SMART SM00028 35 68 190.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09855 a27cf4aaafe45b42286c65384a7f70c0 388 SMART SM00028 179 212 39.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_03390 805313f0217987b8a00a27b559752e23 822 Gene3D G3DSA:3.40.50.720 478 818 3.0E-104 T 14-10-2018 RY45_03390 805313f0217987b8a00a27b559752e23 822 ProSitePatterns PS00324 Aspartokinase signature. 22 30 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_03390 805313f0217987b8a00a27b559752e23 822 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 479 611 5.0E-11 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RY45_03390 805313f0217987b8a00a27b559752e23 822 SUPERFAMILY SSF53633 19 310 2.09E-60 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_03390 805313f0217987b8a00a27b559752e23 822 Pfam PF00742 Homoserine dehydrogenase 620 815 9.5E-44 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RY45_03390 805313f0217987b8a00a27b559752e23 822 Gene3D G3DSA:3.40.1160.10 22 309 1.7E-73 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_03390 805313f0217987b8a00a27b559752e23 822 SUPERFAMILY SSF55347 620 803 3.73E-45 T 14-10-2018 RY45_03390 805313f0217987b8a00a27b559752e23 822 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 22 467 3.0E-64 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_03390 805313f0217987b8a00a27b559752e23 822 Gene3D G3DSA:3.30.360.10 631 801 3.0E-104 T 14-10-2018 RY45_03390 805313f0217987b8a00a27b559752e23 822 PIRSF PIRSF000727 20 822 2.1E-243 T 14-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_03390 805313f0217987b8a00a27b559752e23 822 Gene3D G3DSA:3.30.2130.10 318 477 1.3E-5 T 14-10-2018 RY45_03390 805313f0217987b8a00a27b559752e23 822 Pfam PF00696 Amino acid kinase family 20 293 8.2E-43 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_03390 805313f0217987b8a00a27b559752e23 822 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 666 688 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RY45_03390 805313f0217987b8a00a27b559752e23 822 SUPERFAMILY SSF51735 471 642 4.57E-21 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_03390 805313f0217987b8a00a27b559752e23 822 Gene3D G3DSA:1.20.120.1320 63 157 1.7E-73 T 14-10-2018 RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 3.1E-203 T 14-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 Gene3D G3DSA:3.40.47.10 258 402 1.6E-57 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 248 1.5E-67 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 SUPERFAMILY SSF53901 216 412 6.47E-74 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 SMART SM00825 Beta-ketoacyl synthase 6 413 7.0E-19 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 Gene3D G3DSA:3.40.47.10 1 256 2.6E-93 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 256 370 2.1E-40 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 SUPERFAMILY SSF53901 3 253 2.69E-83 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_11595 7b2c0a2ba7c32c15cf282fda5ead2e8f 413 PIRSF PIRSF000447 1 413 8.1E-201 T 14-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 RY45_02740 323222298f053348ff301b7b2ebf4609 321 Gene3D G3DSA:2.40.50.100 196 230 1.7E-12 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 Gene3D G3DSA:1.10.287.470 164 195 1.7E-12 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 SUPERFAMILY SSF111369 34 91 5.1E-7 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 SUPERFAMILY SSF111369 101 159 1.1E-5 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 Gene3D G3DSA:1.10.287.470 97 162 7.9E-11 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 Gene3D G3DSA:2.40.50.100 32 65 1.6E-9 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 SUPERFAMILY SSF111369 165 268 1.44E-6 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 Gene3D G3DSA:2.40.30.170 231 304 1.7E-12 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 Pfam PF13437 HlyD family secretion protein 196 297 1.1E-8 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 Gene3D G3DSA:1.10.287.470 66 90 1.6E-9 T 14-10-2018 RY45_02740 323222298f053348ff301b7b2ebf4609 321 Pfam PF13533 Biotin-lipoyl like 40 79 4.8E-7 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 SUPERFAMILY SSF52540 429 739 2.39E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 Gene3D G3DSA:3.30.980.40 347 451 1.3E-34 T 14-10-2018 RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 SMART SM00843 772 837 3.6E-42 T 14-10-2018 IPR018541 FtsK gamma domain RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 SUPERFAMILY SSF46785 771 836 8.71E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 Pfam PF09397 Ftsk gamma domain 774 834 9.8E-28 T 14-10-2018 IPR018541 FtsK gamma domain RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 15 185 1.0E-39 T 14-10-2018 IPR025199 DNA translocase FtsK, 4TM region RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 Gene3D G3DSA:3.40.50.300 452 754 2.2E-121 T 14-10-2018 RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 Pfam PF01580 FtsK/SpoIIIE family 455 668 1.7E-69 T 14-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RY45_10025 1782a9d9a2a01e4304945f6681d404e6 840 Gene3D G3DSA:1.10.10.10 776 839 6.1E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00940 bcab5ef6d2883bacbdea87017ff34897 186 Pfam PF00857 Isochorismatase family 7 171 4.6E-44 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 RY45_00940 bcab5ef6d2883bacbdea87017ff34897 186 Gene3D G3DSA:3.40.50.850 2 176 4.7E-54 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_00940 bcab5ef6d2883bacbdea87017ff34897 186 SUPERFAMILY SSF52499 4 180 2.75E-52 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 Gene3D G3DSA:1.20.58.410 5 102 3.6E-6 T 14-10-2018 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 Pfam PF03462 PCRF domain 14 205 1.1E-74 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 SMART SM00937 67 180 6.1E-67 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 Gene3D G3DSA:3.30.70.1660 113 343 5.6E-95 T 14-10-2018 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 359 8.7E-169 T 14-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 Gene3D G3DSA:3.30.160.20 212 299 5.6E-95 T 14-10-2018 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 40.984 T 14-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 Pfam PF00472 RF-1 domain 216 323 2.5E-40 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RY45_16245 2f906112208f596ed1e444e20bbf97b5 362 SUPERFAMILY SSF75620 12 355 3.79E-135 T 14-10-2018 RY45_21030 b49972470bd4750fbe2de1570f34b35c 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 125 6.5E-54 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 RY45_21030 b49972470bd4750fbe2de1570f34b35c 126 Pfam PF01042 Endoribonuclease L-PSP 9 125 1.8E-43 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RY45_21030 b49972470bd4750fbe2de1570f34b35c 126 Gene3D G3DSA:3.30.1330.40 1 126 3.2E-54 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_21030 b49972470bd4750fbe2de1570f34b35c 126 SUPERFAMILY SSF55298 1 126 1.1E-48 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 Gene3D G3DSA:3.40.50.300 270 430 1.2E-46 T 14-10-2018 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 523 540 1.1E-8 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 540 558 1.1E-8 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 Pfam PF00158 Sigma-54 interaction domain 275 421 1.8E-52 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 SUPERFAMILY SSF52540 273 497 1.33E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 345 360 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 Pfam PF01590 GAF domain 89 186 5.1E-5 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 282 295 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 SUPERFAMILY SSF46689 508 557 7.47E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 Gene3D G3DSA:3.30.450.40 2 188 2.1E-46 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 Gene3D G3DSA:1.10.10.60 510 557 1.8E-15 T 14-10-2018 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 SMART SM00382 278 422 7.7E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 Pfam PF02954 Bacterial regulatory protein, Fis family 517 556 3.5E-12 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_06660 1560d8b8534add284e0504ad4fe9f88f 558 Gene3D G3DSA:1.10.8.60 439 504 2.9E-7 T 14-10-2018 RY45_03315 120027a41075695bdf7988c7798d89ef 215 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 36 6.2E-9 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03315 120027a41075695bdf7988c7798d89ef 215 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 14 34 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03315 120027a41075695bdf7988c7798d89ef 215 Gene3D G3DSA:3.10.610.10 45 157 4.9E-37 T 14-10-2018 RY45_03315 120027a41075695bdf7988c7798d89ef 215 Gene3D G3DSA:2.10.70.20 159 208 9.7E-12 T 14-10-2018 RY45_03315 120027a41075695bdf7988c7798d89ef 215 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 15 205 1.0E-98 T 14-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 RY45_03315 120027a41075695bdf7988c7798d89ef 215 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 36 4.8E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03315 120027a41075695bdf7988c7798d89ef 215 Pfam PF11612 Type II secretion system (T2SS), protein J 66 202 3.1E-39 T 14-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 RY45_03315 120027a41075695bdf7988c7798d89ef 215 SUPERFAMILY SSF54523 47 204 1.13E-49 T 14-10-2018 RY45_03815 d506b673d47cadfd0a76edb2972fa42c 175 Pfam PF00293 NUDIX domain 7 147 3.9E-27 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_03815 d506b673d47cadfd0a76edb2972fa42c 175 PRINTS PR00502 NUDIX hydrolase family signature 47 62 4.8E-8 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_03815 d506b673d47cadfd0a76edb2972fa42c 175 PRINTS PR00502 NUDIX hydrolase family signature 33 47 4.8E-8 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_03815 d506b673d47cadfd0a76edb2972fa42c 175 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_03815 d506b673d47cadfd0a76edb2972fa42c 175 SUPERFAMILY SSF55811 7 155 1.12E-34 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_03815 d506b673d47cadfd0a76edb2972fa42c 175 Gene3D G3DSA:3.90.79.10 1 160 1.2E-48 T 14-10-2018 RY45_03815 d506b673d47cadfd0a76edb2972fa42c 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 157 36.902 T 14-10-2018 IPR022927 RNA pyrophosphohydrolase RppH RY45_21470 7a63a66c4c16386d46290460ce294247 848 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 800 0.0 T 14-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 RY45_21470 7a63a66c4c16386d46290460ce294247 848 SUPERFAMILY SSF56014 633 808 1.09E-46 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 Gene3D G3DSA:3.30.413.10 632 797 1.2E-29 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00397 Sirohaem Fe-binding site signature 679 697 6.0E-6 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00397 Sirohaem Fe-binding site signature 636 654 6.0E-6 T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_21470 7a63a66c4c16386d46290460ce294247 848 Gene3D G3DSA:3.50.50.60 7 284 1.5E-86 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_21470 7a63a66c4c16386d46290460ce294247 848 PIRSF PIRSF037149 1 835 0.0 T 14-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 RY45_21470 7a63a66c4c16386d46290460ce294247 848 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 679 695 - T 14-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 8.7E-14 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 8.7E-14 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 8.7E-14 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 8.7E-14 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 633 756 2.8E-14 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_21470 7a63a66c4c16386d46290460ce294247 848 Gene3D G3DSA:1.10.10.1100 423 477 4.3E-13 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 Pfam PF04324 BFD-like [2Fe-2S] binding domain 424 471 3.4E-16 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_21470 7a63a66c4c16386d46290460ce294247 848 Gene3D G3DSA:3.50.50.60 110 247 1.5E-86 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_21470 7a63a66c4c16386d46290460ce294247 848 SUPERFAMILY SSF55124 502 629 5.72E-29 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_21470 7a63a66c4c16386d46290460ce294247 848 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 284 8.5E-49 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_21470 7a63a66c4c16386d46290460ce294247 848 SUPERFAMILY SSF51905 145 310 1.0E-24 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 284 1.4E-10 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 1.4E-10 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 236 250 1.4E-10 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 1.4E-10 T 14-10-2018 RY45_21470 7a63a66c4c16386d46290460ce294247 848 SUPERFAMILY SSF51905 2 189 1.66E-42 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_21470 7a63a66c4c16386d46290460ce294247 848 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 560 622 1.9E-11 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_00075 7206d42dd5d74938643ad9295d814607 175 Pfam PF02669 K+-transporting ATPase, c chain 3 170 2.1E-50 T 14-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RY45_00075 7206d42dd5d74938643ad9295d814607 175 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 1 172 26.713 T 14-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RY45_00075 7206d42dd5d74938643ad9295d814607 175 PIRSF PIRSF001296 1 175 1.1E-51 T 14-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 SMART SM00937 13 123 2.6E-51 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 Pfam PF00472 RF-1 domain 156 265 7.9E-42 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 Pfam PF03462 PCRF domain 6 148 4.6E-44 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 SUPERFAMILY SSF75620 2 292 1.02E-122 T 14-10-2018 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 2 293 31.741 T 14-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 Gene3D G3DSA:3.30.70.1660 58 286 1.2E-96 T 14-10-2018 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 291 4.5E-148 T 14-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 Gene3D G3DSA:3.30.160.20 154 249 1.2E-96 T 14-10-2018 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 Gene3D G3DSA:1.20.58.410 1 44 2.8E-7 T 14-10-2018 RY45_17355 4f7c4437dc7ea16718cb0945175eab99 293 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 173 189 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SMART SM00387 586 695 1.3E-35 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Gene3D G3DSA:3.40.50.12740 736 930 2.7E-46 T 14-10-2018 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Pfam PF00672 HAMP domain 391 439 2.3E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Gene3D G3DSA:3.30.450.20 228 372 3.7E-6 T 14-10-2018 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SMART SM00304 391 444 2.0E-12 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SUPERFAMILY SSF55785 873 941 6.43E-8 T 14-10-2018 IPR035965 PAS domain superfamily RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Gene3D G3DSA:1.10.8.500 390 443 7.0E-11 T 14-10-2018 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SUPERFAMILY SSF47384 464 541 1.39E-16 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Gene3D G3DSA:3.30.565.10 539 697 8.1E-45 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 587 694 7.8E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 692 6.5E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 PRINTS PR00344 Bacterial sensor protein C-terminal signature 622 636 6.5E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 PRINTS PR00344 Bacterial sensor protein C-terminal signature 640 650 6.5E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 PRINTS PR00344 Bacterial sensor protein C-terminal signature 655 673 6.5E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SUPERFAMILY SSF52172 731 863 2.7E-40 T 14-10-2018 IPR011006 CheY-like superfamily RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Pfam PF00512 His Kinase A (phospho-acceptor) domain 474 538 4.0E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SUPERFAMILY SSF158472 392 442 1.31E-9 T 14-10-2018 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SMART SM00448 736 849 4.9E-40 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Gene3D G3DSA:1.10.287.130 444 538 7.5E-20 T 14-10-2018 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SMART SM00388 473 540 5.1E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 Pfam PF00072 Response regulator receiver domain 738 849 1.8E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SUPERFAMILY SSF55874 529 694 8.51E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_15955 855af4d85f27b0d494f44e63c6f1e8bb 1145 SMART SM00091 887 952 8.6E-5 T 14-10-2018 IPR000014 PAS domain RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 3 247 2.5E-86 T 14-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 3 248 44.375 T 14-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 Gene3D G3DSA:3.30.1330.30 1 77 2.0E-26 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 SUPERFAMILY SSF75217 97 248 2.42E-49 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 Pfam PF00588 SpoU rRNA Methylase family 101 241 4.9E-40 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 SUPERFAMILY SSF55315 3 77 4.36E-19 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 78 1.2E-19 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 Gene3D G3DSA:3.40.1280.10 83 248 8.1E-64 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_03980 2605f12138df8a5344b979bdbdffae6f 249 SMART SM00967 5 81 2.4E-21 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RY45_12935 6838805cda97c7c87e307722966fba94 637 PIRSF PIRSF002583 2 637 3.5E-219 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RY45_12935 6838805cda97c7c87e307722966fba94 637 SUPERFAMILY SSF55874 7 217 2.1E-66 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_12935 6838805cda97c7c87e307722966fba94 637 Gene3D G3DSA:3.30.230.80 240 407 8.4E-71 T 14-10-2018 RY45_12935 6838805cda97c7c87e307722966fba94 637 Gene3D G3DSA:3.30.565.10 1 231 1.8E-77 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_12935 6838805cda97c7c87e307722966fba94 637 SMART SM00387 30 187 1.4E-8 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_12935 6838805cda97c7c87e307722966fba94 637 PRINTS PR00775 90kDa heat shock protein signature 78 95 5.4E-62 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RY45_12935 6838805cda97c7c87e307722966fba94 637 PRINTS PR00775 90kDa heat shock protein signature 96 113 5.4E-62 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RY45_12935 6838805cda97c7c87e307722966fba94 637 PRINTS PR00775 90kDa heat shock protein signature 193 211 5.4E-62 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RY45_12935 6838805cda97c7c87e307722966fba94 637 PRINTS PR00775 90kDa heat shock protein signature 123 145 5.4E-62 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RY45_12935 6838805cda97c7c87e307722966fba94 637 PRINTS PR00775 90kDa heat shock protein signature 29 51 5.4E-62 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RY45_12935 6838805cda97c7c87e307722966fba94 637 PRINTS PR00775 90kDa heat shock protein signature 175 192 5.4E-62 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RY45_12935 6838805cda97c7c87e307722966fba94 637 PRINTS PR00775 90kDa heat shock protein signature 8 28 5.4E-62 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RY45_12935 6838805cda97c7c87e307722966fba94 637 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 635 32.832 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RY45_12935 6838805cda97c7c87e307722966fba94 637 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 14-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 RY45_12935 6838805cda97c7c87e307722966fba94 637 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 186 1.1E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_12935 6838805cda97c7c87e307722966fba94 637 SUPERFAMILY SSF110942 523 635 2.09E-37 T 14-10-2018 IPR037196 HSP90, C-terminal domain RY45_12935 6838805cda97c7c87e307722966fba94 637 Gene3D G3DSA:1.20.120.790 503 636 1.1E-45 T 14-10-2018 IPR037196 HSP90, C-terminal domain RY45_12935 6838805cda97c7c87e307722966fba94 637 SUPERFAMILY SSF54211 241 496 3.94E-101 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_12935 6838805cda97c7c87e307722966fba94 637 Pfam PF00183 Hsp90 protein 226 635 2.3E-133 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RY45_12935 6838805cda97c7c87e307722966fba94 637 Gene3D G3DSA:3.40.50.11260 408 497 6.4E-35 T 14-10-2018 RY45_16665 a9284b0fa99d3d3015cb13b366a110a8 517 SUPERFAMILY SSF55073 354 499 1.26E-31 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_16665 a9284b0fa99d3d3015cb13b366a110a8 517 Pfam PF00990 Diguanylate cyclase, GGDEF domain 350 494 2.4E-28 T 14-10-2018 IPR000160 GGDEF domain RY45_16665 a9284b0fa99d3d3015cb13b366a110a8 517 Gene3D G3DSA:3.30.70.270 345 505 5.7E-36 T 14-10-2018 RY45_16665 a9284b0fa99d3d3015cb13b366a110a8 517 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 350 498 3.3E-26 T 14-10-2018 IPR000160 GGDEF domain RY45_16665 a9284b0fa99d3d3015cb13b366a110a8 517 SMART SM00267 338 499 5.0E-36 T 14-10-2018 IPR000160 GGDEF domain RY45_16665 a9284b0fa99d3d3015cb13b366a110a8 517 Gene3D G3DSA:3.30.450.20 81 183 1.6E-11 T 14-10-2018 RY45_02180 e44df5f527373973c9549b184a5e830d 569 Gene3D G3DSA:3.40.1770.10 21 546 2.0E-262 T 14-10-2018 RY45_02180 e44df5f527373973c9549b184a5e830d 569 Pfam PF17391 Urocanase N-terminal domain 16 142 7.4E-63 T 14-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02180 e44df5f527373973c9549b184a5e830d 569 SUPERFAMILY SSF111326 9 559 2.22E-262 T 14-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02180 e44df5f527373973c9549b184a5e830d 569 PIRSF PIRSF001423 1 564 1.3E-296 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02180 e44df5f527373973c9549b184a5e830d 569 TIGRFAM TIGR01228 hutU: urocanate hydratase 15 558 8.7E-295 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02180 e44df5f527373973c9549b184a5e830d 569 Pfam PF17392 Urocanase C-terminal domain 356 550 5.2E-92 T 14-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02180 e44df5f527373973c9549b184a5e830d 569 Hamap MF_00577 Urocanate hydratase [hutU]. 4 560 49.984 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02180 e44df5f527373973c9549b184a5e830d 569 ProSitePatterns PS01233 Urocanase signature. 446 461 - T 14-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02180 e44df5f527373973c9549b184a5e830d 569 Gene3D G3DSA:3.40.50.10730 146 353 2.0E-262 T 14-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_02180 e44df5f527373973c9549b184a5e830d 569 Pfam PF01175 Urocanase Rossmann-like domain 145 353 1.8E-87 T 14-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RY45_19360 7fe773474c9d3f2b9cad3e2df01871a9 242 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 4.8E-45 T 14-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 RY45_19360 7fe773474c9d3f2b9cad3e2df01871a9 242 SUPERFAMILY SSF69593 2 235 4.84E-49 T 14-10-2018 RY45_19360 7fe773474c9d3f2b9cad3e2df01871a9 242 Pfam PF01553 Acyltransferase 52 180 6.8E-32 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_19360 7fe773474c9d3f2b9cad3e2df01871a9 242 SMART SM00563 67 182 3.1E-42 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_06320 607acb82e6a313afc17bf75cca737bce 285 Pfam PF01148 Cytidylyltransferase family 3 278 1.6E-63 T 14-10-2018 RY45_06320 607acb82e6a313afc17bf75cca737bce 285 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 14-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 RY45_12395 2820a85df9705411fe10aafd5ffbb998 155 SUPERFAMILY SSF102712 51 124 4.58E-5 T 14-10-2018 RY45_12395 2820a85df9705411fe10aafd5ffbb998 155 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 104 109 - T 14-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site RY45_12395 2820a85df9705411fe10aafd5ffbb998 155 Pfam PF04002 RadC-like JAB domain 34 153 1.1E-41 T 14-10-2018 IPR025657 RadC-like JAB domain RY45_12395 2820a85df9705411fe10aafd5ffbb998 155 TIGRFAM TIGR00608 radc: DNA repair protein RadC 27 155 2.9E-41 T 14-10-2018 IPR001405 Uncharacterised protein family UPF0758 RY45_12395 2820a85df9705411fe10aafd5ffbb998 155 Gene3D G3DSA:3.40.140.10 32 155 2.0E-42 T 14-10-2018 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 SUPERFAMILY SSF55174 3 206 4.06E-72 T 14-10-2018 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 Gene3D G3DSA:3.10.290.10 103 191 2.3E-35 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 Gene3D G3DSA:1.10.1050.10 1 102 6.8E-45 T 14-10-2018 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 Pfam PF01479 S4 domain 97 143 4.4E-18 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.251 T 14-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 SMART SM01390 3 95 8.6E-52 T 14-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 14-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 SMART SM00363 96 160 3.8E-19 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 7.4E-33 T 14-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 RY45_01950 6b7de6b7c048a9f7b50e8f970a6c377b 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 1.5E-85 T 14-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RY45_14755 302b0f48a0181d97ad5e07080ea5d123 192 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 34 187 6.7E-82 T 14-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 RY45_14755 302b0f48a0181d97ad5e07080ea5d123 192 Gene3D G3DSA:3.40.50.10490 1 192 2.5E-71 T 14-10-2018 RY45_14755 302b0f48a0181d97ad5e07080ea5d123 192 Pfam PF13580 SIS domain 24 146 7.4E-31 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_14755 302b0f48a0181d97ad5e07080ea5d123 192 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 37.618 T 14-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 RY45_14755 302b0f48a0181d97ad5e07080ea5d123 192 SUPERFAMILY SSF53697 1 189 1.03E-52 T 14-10-2018 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 SMART SM00963 1 86 6.0E-38 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 Gene3D G3DSA:1.20.120.140 4 305 1.3E-126 T 14-10-2018 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 SUPERFAMILY SSF47446 298 431 1.2E-45 T 14-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 SMART SM00382 99 247 3.7E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 2.3E-76 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 440 34.645 T 14-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 3.3E-181 T 14-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 SUPERFAMILY SSF52540 42 352 1.59E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 Gene3D G3DSA:1.10.260.30 328 451 2.0E-43 T 14-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 Gene3D G3DSA:3.40.50.300 90 285 1.3E-126 T 14-10-2018 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 SMART SM00962 100 296 1.4E-117 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 Pfam PF02978 Signal peptide binding domain 329 427 6.1E-33 T 14-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_03775 6b3bb3c8099f7aff9ae97c56ff669648 458 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 2.7E-22 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_15440 61b20862143c81f1d0af264ed38e47a0 140 SUPERFAMILY SSF55729 1 127 5.66E-26 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_15440 61b20862143c81f1d0af264ed38e47a0 140 Gene3D G3DSA:3.40.630.30 1 133 8.7E-27 T 14-10-2018 RY45_15440 61b20862143c81f1d0af264ed38e47a0 140 Pfam PF13673 Acetyltransferase (GNAT) domain 42 125 8.1E-17 T 14-10-2018 IPR000182 GNAT domain RY45_18845 3a3c29202655f178c5acad8af965465b 454 Gene3D G3DSA:3.40.50.300 66 278 2.2E-37 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 451 2.0E-221 T 14-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RY45_18845 3a3c29202655f178c5acad8af965465b 454 SMART SM00382 91 244 1.7E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_18845 3a3c29202655f178c5acad8af965465b 454 PRINTS PR01874 DNA repair protein radA signature 83 111 4.3E-93 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 PRINTS PR01874 DNA repair protein radA signature 124 141 4.3E-93 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 PRINTS PR01874 DNA repair protein radA signature 10 34 4.3E-93 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 PRINTS PR01874 DNA repair protein radA signature 213 241 4.3E-93 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 PRINTS PR01874 DNA repair protein radA signature 322 345 4.3E-93 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 PRINTS PR01874 DNA repair protein radA signature 248 274 4.3E-93 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 PRINTS PR01874 DNA repair protein radA signature 174 198 4.3E-93 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 Pfam PF13541 Subunit ChlI of Mg-chelatase 345 430 2.7E-9 T 14-10-2018 RY45_18845 3a3c29202655f178c5acad8af965465b 454 SUPERFAMILY SSF52540 70 289 1.94E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18845 3a3c29202655f178c5acad8af965465b 454 Gene3D G3DSA:3.30.230.10 325 454 4.3E-21 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_18845 3a3c29202655f178c5acad8af965465b 454 SUPERFAMILY SSF54211 255 454 9.86E-43 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_18845 3a3c29202655f178c5acad8af965465b 454 Hamap MF_01498 DNA repair protein RadA [radA]. 21 452 42.035 T 14-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RY45_18845 3a3c29202655f178c5acad8af965465b 454 Pfam PF13481 AAA domain 79 222 8.7E-13 T 14-10-2018 RY45_14665 5dcc85e04cca3dad5a5d7927321a09af 174 SUPERFAMILY SSF55040 20 164 5.89E-62 T 14-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_14665 5dcc85e04cca3dad5a5d7927321a09af 174 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 11 167 36.483 T 14-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_14665 5dcc85e04cca3dad5a5d7927321a09af 174 Pfam PF01967 MoaC family 24 159 7.1E-56 T 14-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_14665 5dcc85e04cca3dad5a5d7927321a09af 174 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 13 161 1.4E-69 T 14-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_14665 5dcc85e04cca3dad5a5d7927321a09af 174 Gene3D G3DSA:3.30.70.640 11 170 2.6E-72 T 14-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_20810 abb7263ab88751f789e84083878a27ba 268 Gene3D G3DSA:3.40.1410.10 86 248 1.4E-33 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_20810 abb7263ab88751f789e84083878a27ba 268 SUPERFAMILY SSF64288 71 247 9.74E-40 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_20810 abb7263ab88751f789e84083878a27ba 268 Gene3D G3DSA:1.10.10.10 2 84 1.5E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_20810 abb7263ab88751f789e84083878a27ba 268 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 3.1E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_20810 abb7263ab88751f789e84083878a27ba 268 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 3.1E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_20810 abb7263ab88751f789e84083878a27ba 268 SMART SM00866 104 243 2.4E-31 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RY45_20810 abb7263ab88751f789e84083878a27ba 268 Pfam PF07702 UTRA domain 105 242 5.9E-31 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RY45_20810 abb7263ab88751f789e84083878a27ba 268 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 3.0E-18 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_20810 abb7263ab88751f789e84083878a27ba 268 SUPERFAMILY SSF46785 16 87 5.96E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_20810 abb7263ab88751f789e84083878a27ba 268 SMART SM00345 24 83 1.4E-16 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 Gene3D G3DSA:3.50.50.60 377 503 1.3E-97 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_08405 0ea2584529112193014dbd293fdef8ea 722 Gene3D G3DSA:3.30.390.30 581 702 2.6E-35 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 SUPERFAMILY SSF55424 578 694 4.3E-33 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 582 686 6.2E-26 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 578 599 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 286 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 643 658 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 239 261 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 497 511 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 665 685 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 404 429 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 540 547 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 368 377 4.3E-52 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 272 282 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 SUPERFAMILY SSF51905 234 604 1.48E-50 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_08405 0ea2584529112193014dbd293fdef8ea 722 Gene3D G3DSA:3.50.50.60 238 564 1.3E-97 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 496 512 6.3E-26 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 525 547 6.3E-26 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 240 259 6.3E-26 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 365 383 6.3E-26 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 404 422 6.3E-26 T 14-10-2018 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 239 560 9.6E-54 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_08405 0ea2584529112193014dbd293fdef8ea 722 Pfam PF09335 SNARE associated Golgi protein 68 184 8.3E-22 T 14-10-2018 IPR032816 SNARE associated Golgi protein RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 SUPERFAMILY SSF50249 2 68 5.71E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 SMART SM00357 6 69 3.4E-30 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 Gene3D G3DSA:2.40.50.140 4 68 2.0E-30 T 14-10-2018 RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 PIRSF PIRSF002599 1 69 2.3E-24 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 14-10-2018 IPR019844 Cold-shock conserved site RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 PRINTS PR00050 Cold shock protein signature 42 60 1.2E-16 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 PRINTS PR00050 Cold shock protein signature 27 36 1.2E-16 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 PRINTS PR00050 Cold shock protein signature 7 22 1.2E-16 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_14935 9600c0720c6fb8820cf28719d2b2e734 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 1.1E-29 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 SUPERFAMILY SSF52980 901 1188 6.97E-80 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Pfam PF00580 UvrD/REP helicase N-terminal domain 13 439 1.2E-60 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Gene3D G3DSA:3.90.320.10 892 1193 4.3E-97 T 14-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Pfam PF13361 UvrD-like helicase C-terminal domain 730 809 1.3E-11 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 3 1188 22.535 T 14-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Gene3D G3DSA:1.10.3170.10 162 352 8.8E-152 T 14-10-2018 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Pfam PF12705 PD-(D/E)XK nuclease superfamily 965 1164 7.6E-7 T 14-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Gene3D G3DSA:3.40.50.300 5 439 8.8E-152 T 14-10-2018 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 5 1187 0.0 T 14-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Pfam PF13361 UvrD-like helicase C-terminal domain 444 663 4.2E-8 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Gene3D G3DSA:1.10.486.10 582 727 3.1E-152 T 14-10-2018 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 Gene3D G3DSA:3.40.50.300 449 846 3.1E-152 T 14-10-2018 RY45_20775 ebbab2ad5f44d28864ad66831cc17ac5 1206 SUPERFAMILY SSF52540 14 822 1.09E-103 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08540 bd1561b4e31be4e8cd83b8e3564b3d6a 170 Gene3D G3DSA:3.30.70.260 83 167 5.9E-20 T 14-10-2018 RY45_08540 bd1561b4e31be4e8cd83b8e3564b3d6a 170 SUPERFAMILY SSF55021 85 163 1.99E-13 T 14-10-2018 RY45_08540 bd1561b4e31be4e8cd83b8e3564b3d6a 170 Gene3D G3DSA:3.30.70.260 2 76 2.8E-17 T 14-10-2018 RY45_08540 bd1561b4e31be4e8cd83b8e3564b3d6a 170 PIRSF PIRSF028103 1 169 3.2E-39 T 14-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 RY45_08540 bd1561b4e31be4e8cd83b8e3564b3d6a 170 Pfam PF13740 ACT domain 4 64 8.7E-12 T 14-10-2018 RY45_08540 bd1561b4e31be4e8cd83b8e3564b3d6a 170 SUPERFAMILY SSF55021 2 65 3.72E-11 T 14-10-2018 RY45_01485 02a205746869144be9f06e3da4827963 272 SUPERFAMILY SSF51215 22 151 5.1E-17 T 14-10-2018 IPR037923 Transcription regulator HTH-like RY45_01485 02a205746869144be9f06e3da4827963 272 SUPERFAMILY SSF46689 215 265 1.97E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_01485 02a205746869144be9f06e3da4827963 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 1.1E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_01485 02a205746869144be9f06e3da4827963 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 1.1E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_01485 02a205746869144be9f06e3da4827963 272 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 164 208 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_01485 02a205746869144be9f06e3da4827963 272 SUPERFAMILY SSF46689 162 213 1.08E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_01485 02a205746869144be9f06e3da4827963 272 Gene3D G3DSA:1.10.10.60 166 221 1.2E-14 T 14-10-2018 RY45_01485 02a205746869144be9f06e3da4827963 272 Pfam PF02311 AraC-like ligand binding domain 17 147 9.0E-18 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RY45_01485 02a205746869144be9f06e3da4827963 272 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 216 257 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_01485 02a205746869144be9f06e3da4827963 272 Gene3D G3DSA:1.10.10.60 222 269 9.5E-13 T 14-10-2018 RY45_01485 02a205746869144be9f06e3da4827963 272 SMART SM00342 179 261 7.9E-28 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_01485 02a205746869144be9f06e3da4827963 272 Pfam PF12833 Helix-turn-helix domain 185 263 7.8E-24 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 SUPERFAMILY SSF54211 191 330 2.09E-37 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 14-10-2018 IPR014762 DNA mismatch repair, conserved site RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 SUPERFAMILY SSF55874 1 207 5.37E-54 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 Gene3D G3DSA:3.30.565.10 1 216 8.8E-71 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 6.2E-98 T 14-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 SMART SM01340 212 330 1.6E-58 T 14-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 Gene3D G3DSA:3.30.230.10 217 329 3.0E-39 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 622 25.42 T 14-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 5.8E-38 T 14-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 124 2.4E-13 T 14-10-2018 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 SMART SM00853 440 581 1.6E-15 T 14-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 Pfam PF08676 MutL C terminal dimerisation domain 439 571 8.9E-25 T 14-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 Gene3D G3DSA:2.30.42.20 439 593 1.2E-30 T 14-10-2018 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 Gene3D G3DSA:3.30.1370.100 482 575 1.2E-30 T 14-10-2018 RY45_05105 45b9c598af5dd3c240a98d666f82ec98 622 SUPERFAMILY SSF118116 437 594 4.45E-32 T 14-10-2018 IPR037198 MutL, C-terminal domain superfamily RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 Gene3D G3DSA:2.60.300.12 1 98 5.7E-14 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 Gene3D G3DSA:3.30.300.130 101 189 2.5E-19 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 181 4.0E-23 T 14-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 SUPERFAMILY SSF117916 95 184 1.87E-22 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 99 2.5E-10 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 SUPERFAMILY SSF89360 1 97 2.75E-22 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 Pfam PF01106 NifU-like domain 111 174 3.2E-19 T 14-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 192 5.3E-98 T 14-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 RY45_01780 0c4399d067c3e5e806f886f7b620f861 192 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 192 45.732 T 14-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 RY45_18165 b6e9a84377220790d58156592d0eeac3 305 SUPERFAMILY SSF52374 14 293 3.85E-84 T 14-10-2018 RY45_18165 b6e9a84377220790d58156592d0eeac3 305 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 14 298 41.028 T 14-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 RY45_18165 b6e9a84377220790d58156592d0eeac3 305 Gene3D G3DSA:3.40.50.620 89 226 3.5E-106 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_18165 b6e9a84377220790d58156592d0eeac3 305 Gene3D G3DSA:3.40.50.620 14 292 3.5E-106 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_18165 b6e9a84377220790d58156592d0eeac3 305 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 17 251 1.7E-40 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 RY45_18165 b6e9a84377220790d58156592d0eeac3 305 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 14 278 7.3E-112 T 14-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 RY45_18165 b6e9a84377220790d58156592d0eeac3 305 PRINTS PR00987 Glutamyl-tRNA synthetase signature 46 59 6.4E-13 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_18165 b6e9a84377220790d58156592d0eeac3 305 PRINTS PR00987 Glutamyl-tRNA synthetase signature 178 188 6.4E-13 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_18165 b6e9a84377220790d58156592d0eeac3 305 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 202 6.4E-13 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_18165 b6e9a84377220790d58156592d0eeac3 305 PRINTS PR00987 Glutamyl-tRNA synthetase signature 17 29 6.4E-13 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_03070 1742d0c43f06b277c1dd1c2200d73445 411 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 99 7.4E-15 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_03070 1742d0c43f06b277c1dd1c2200d73445 411 Gene3D G3DSA:1.10.10.10 7 119 5.2E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03070 1742d0c43f06b277c1dd1c2200d73445 411 SMART SM00862 25 99 1.2E-13 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_03070 1742d0c43f06b277c1dd1c2200d73445 411 SUPERFAMILY SSF46894 3 101 9.92E-17 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_12250 ec42f8ab23370990ce109bf3d936f8f0 205 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 1.8E-70 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_12250 ec42f8ab23370990ce109bf3d936f8f0 205 Pfam PF00677 Lumazine binding domain 3 88 9.1E-21 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_12250 ec42f8ab23370990ce109bf3d936f8f0 205 Pfam PF00677 Lumazine binding domain 101 185 1.4E-19 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_12250 ec42f8ab23370990ce109bf3d936f8f0 205 SUPERFAMILY SSF63380 94 199 5.27E-29 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_12250 ec42f8ab23370990ce109bf3d936f8f0 205 Gene3D G3DSA:2.40.30.20 95 191 8.2E-27 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_12250 ec42f8ab23370990ce109bf3d936f8f0 205 Gene3D G3DSA:2.40.30.20 1 90 1.6E-29 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_12250 ec42f8ab23370990ce109bf3d936f8f0 205 SUPERFAMILY SSF63380 1 94 1.87E-27 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_12250 ec42f8ab23370990ce109bf3d936f8f0 205 PIRSF PIRSF000498 1 204 9.1E-66 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_11795 39c1c65e6aefbc19272757ef24ce24a5 181 Pfam PF00156 Phosphoribosyl transferase domain 32 157 1.7E-16 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RY45_11795 39c1c65e6aefbc19272757ef24ce24a5 181 Gene3D G3DSA:3.40.50.2020 1 180 1.4E-66 T 14-10-2018 RY45_11795 39c1c65e6aefbc19272757ef24ce24a5 181 SUPERFAMILY SSF53271 13 177 1.85E-53 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like RY45_11795 39c1c65e6aefbc19272757ef24ce24a5 181 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 9 178 38.128 T 14-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 RY45_11795 39c1c65e6aefbc19272757ef24ce24a5 181 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 177 2.6E-71 T 14-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 Pfam PF00158 Sigma-54 interaction domain 133 281 2.9E-37 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 Gene3D G3DSA:3.40.50.2300 1 132 3.1E-40 T 14-10-2018 RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 SMART SM00382 152 278 3.7E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 SUPERFAMILY SSF52540 134 359 1.32E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 Gene3D G3DSA:1.10.10.60 367 420 2.8E-12 T 14-10-2018 RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 SMART SM00448 2 113 1.7E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 SUPERFAMILY SSF52172 2 176 2.56E-43 T 14-10-2018 IPR011006 CheY-like superfamily RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 Gene3D G3DSA:3.40.50.300 133 286 5.9E-43 T 14-10-2018 RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 Pfam PF00072 Response regulator receiver domain 4 113 2.4E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 SUPERFAMILY SSF46689 329 417 1.7E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_21180 4afabe920d5862c3f6f7ef4758b7b2e3 426 Gene3D G3DSA:1.10.8.60 287 363 8.7E-16 T 14-10-2018 RY45_08665 09b20e8abb47433fd6daf0f38b31806e 466 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 463 2.7E-157 T 14-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 RY45_08665 09b20e8abb47433fd6daf0f38b31806e 466 Gene3D G3DSA:1.20.1740.10 1 443 3.3E-59 T 14-10-2018 RY45_08665 09b20e8abb47433fd6daf0f38b31806e 466 PIRSF PIRSF006060 1 464 3.3E-48 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_08665 09b20e8abb47433fd6daf0f38b31806e 466 Pfam PF13520 Amino acid permease 6 410 7.3E-71 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_05810 20be595a793d17dc625c94d0e2fe9ad5 104 Pfam PF05336 L-rhamnose mutarotase 3 100 1.6E-25 T 14-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 RY45_05810 20be595a793d17dc625c94d0e2fe9ad5 104 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 1 104 31.249 T 14-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 RY45_05810 20be595a793d17dc625c94d0e2fe9ad5 104 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 3 103 5.8E-46 T 14-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 RY45_05810 20be595a793d17dc625c94d0e2fe9ad5 104 SUPERFAMILY SSF54909 1 103 6.17E-34 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_05810 20be595a793d17dc625c94d0e2fe9ad5 104 Gene3D G3DSA:3.30.70.100 1 97 6.0E-35 T 14-10-2018 RY45_13655 7c1dc44114b9e063925f783121be4794 298 Pfam PF00892 EamA-like transporter family 151 281 2.2E-25 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_13655 7c1dc44114b9e063925f783121be4794 298 Pfam PF00892 EamA-like transporter family 5 135 1.9E-20 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_13655 7c1dc44114b9e063925f783121be4794 298 SUPERFAMILY SSF103481 185 287 9.55E-16 T 14-10-2018 RY45_13655 7c1dc44114b9e063925f783121be4794 298 SUPERFAMILY SSF103481 39 140 6.54E-16 T 14-10-2018 RY45_03850 db8dd0fae1650bf905e2fe2f2046999b 100 Pfam PF01022 Bacterial regulatory protein, arsR family 23 68 2.5E-14 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_03850 db8dd0fae1650bf905e2fe2f2046999b 100 SMART SM00418 15 93 3.9E-28 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_03850 db8dd0fae1650bf905e2fe2f2046999b 100 Gene3D G3DSA:1.10.10.10 1 100 8.9E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03850 db8dd0fae1650bf905e2fe2f2046999b 100 SUPERFAMILY SSF46785 7 96 1.39E-26 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_03850 db8dd0fae1650bf905e2fe2f2046999b 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 3.5E-13 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_03850 db8dd0fae1650bf905e2fe2f2046999b 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 3.5E-13 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_03850 db8dd0fae1650bf905e2fe2f2046999b 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 3.5E-13 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_03850 db8dd0fae1650bf905e2fe2f2046999b 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 47 3.5E-13 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RY45_06395 21c56a296b8f10af919e82d3d29ff4d0 288 SUPERFAMILY SSF53613 1 280 1.19E-70 T 14-10-2018 IPR029056 Ribokinase-like RY45_06395 21c56a296b8f10af919e82d3d29ff4d0 288 Pfam PF08543 Phosphomethylpyrimidine kinase 75 261 6.8E-16 T 14-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RY45_06395 21c56a296b8f10af919e82d3d29ff4d0 288 Gene3D G3DSA:3.40.1190.20 1 287 3.1E-83 T 14-10-2018 IPR029056 Ribokinase-like RY45_06395 21c56a296b8f10af919e82d3d29ff4d0 288 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 280 3.2E-110 T 14-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RY45_06395 21c56a296b8f10af919e82d3d29ff4d0 288 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 51.169 T 14-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 RY45_06175 652b084d734593b6b50dcde250553e8d 364 Pfam PF01728 FtsJ-like methyltransferase 185 256 5.5E-7 T 14-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RY45_06175 652b084d734593b6b50dcde250553e8d 364 Gene3D G3DSA:3.40.50.150 175 356 2.2E-51 T 14-10-2018 RY45_06175 652b084d734593b6b50dcde250553e8d 364 Gene3D G3DSA:3.30.70.2810 1 79 1.6E-31 T 14-10-2018 RY45_06175 652b084d734593b6b50dcde250553e8d 364 PIRSF PIRSF028774 1 359 4.2E-168 T 14-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 RY45_06175 652b084d734593b6b50dcde250553e8d 364 Gene3D G3DSA:3.30.2300.20 80 174 7.7E-35 T 14-10-2018 RY45_06175 652b084d734593b6b50dcde250553e8d 364 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 354 84.956 T 14-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 RY45_06175 652b084d734593b6b50dcde250553e8d 364 SUPERFAMILY SSF53335 183 283 2.7E-11 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_00860 733e2c88577d328286af793f82c67516 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 65 4.1E-22 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_00860 733e2c88577d328286af793f82c67516 235 SUPERFAMILY SSF64288 53 232 3.14E-48 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_00860 733e2c88577d328286af793f82c67516 235 Pfam PF07702 UTRA domain 86 224 1.7E-33 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RY45_00860 733e2c88577d328286af793f82c67516 235 SUPERFAMILY SSF46785 2 69 1.71E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_00860 733e2c88577d328286af793f82c67516 235 SMART SM00866 86 225 6.2E-34 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RY45_00860 733e2c88577d328286af793f82c67516 235 SMART SM00345 6 65 5.4E-22 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_00860 733e2c88577d328286af793f82c67516 235 Gene3D G3DSA:3.40.1410.10 70 233 2.0E-41 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_00860 733e2c88577d328286af793f82c67516 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 25 39 6.4E-10 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_00860 733e2c88577d328286af793f82c67516 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 55 6.4E-10 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_00860 733e2c88577d328286af793f82c67516 235 Gene3D G3DSA:1.10.10.10 1 69 1.1E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 782 796 3.2E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 841 854 3.2E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 816 834 3.2E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 750 856 1.0E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 SUPERFAMILY SSF55874 691 855 5.24E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 SMART SM00388 633 701 1.9E-17 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 18 227 4.9E-91 T 14-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Gene3D G3DSA:3.30.565.10 699 856 2.1E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Pfam PF00512 His Kinase A (phospho-acceptor) domain 634 700 7.7E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 SUPERFAMILY SSF47384 627 701 7.46E-15 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Gene3D G3DSA:3.40.50.300 16 226 1.1E-95 T 14-10-2018 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Gene3D G3DSA:1.20.120.620 376 481 7.5E-23 T 14-10-2018 IPR038318 KdpD, transmembrane domain superfamily RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Pfam PF13493 Domain of unknown function (DUF4118) 382 481 6.7E-22 T 14-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 SMART SM00387 745 857 2.6E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Gene3D G3DSA:1.10.287.130 625 698 1.4E-15 T 14-10-2018 RY45_00070 fbd806c185d14138bd94077c0fd7ea8a 862 Gene3D G3DSA:3.30.450.40 491 624 1.3E-7 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_10075 45a6218655a8dfd4277f17240b06a8d6 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 292 1.1E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_10075 45a6218655a8dfd4277f17240b06a8d6 297 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 15 67 2.6E-13 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RY45_10075 45a6218655a8dfd4277f17240b06a8d6 297 Gene3D G3DSA:1.10.3720.10 87 293 2.5E-18 T 14-10-2018 IPR035906 MetI-like superfamily RY45_10075 45a6218655a8dfd4277f17240b06a8d6 297 SUPERFAMILY SSF161098 91 277 2.35E-22 T 14-10-2018 IPR035906 MetI-like superfamily RY45_06500 0479b17b639f8754a643726e0df73426 208 SUPERFAMILY SSF52833 5 91 1.14E-13 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_06500 0479b17b639f8754a643726e0df73426 208 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 79 1.9E-8 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_06500 0479b17b639f8754a643726e0df73426 208 Gene3D G3DSA:1.20.1050.10 83 186 8.7E-41 T 14-10-2018 RY45_06500 0479b17b639f8754a643726e0df73426 208 SUPERFAMILY SSF47616 82 193 1.47E-7 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_06500 0479b17b639f8754a643726e0df73426 208 Gene3D G3DSA:3.40.30.10 11 191 8.7E-41 T 14-10-2018 RY45_12940 374544ed498a21b74845a8a0cabda21d 200 SMART SM00493 81 166 1.9E-19 T 14-10-2018 IPR006171 TOPRIM domain RY45_12940 374544ed498a21b74845a8a0cabda21d 200 Gene3D G3DSA:1.10.8.420 1 52 2.6E-15 T 14-10-2018 RY45_12940 374544ed498a21b74845a8a0cabda21d 200 Gene3D G3DSA:3.40.1360.10 77 199 1.8E-39 T 14-10-2018 RY45_12940 374544ed498a21b74845a8a0cabda21d 200 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 99.745 T 14-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RY45_12940 374544ed498a21b74845a8a0cabda21d 200 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 5.0E-77 T 14-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RY45_12940 374544ed498a21b74845a8a0cabda21d 200 Pfam PF13662 Toprim domain 83 172 5.8E-23 T 14-10-2018 IPR006171 TOPRIM domain RY45_12940 374544ed498a21b74845a8a0cabda21d 200 Pfam PF02132 RecR protein 41 77 4.9E-13 T 14-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger RY45_12940 374544ed498a21b74845a8a0cabda21d 200 SUPERFAMILY SSF111304 2 199 4.58E-70 T 14-10-2018 IPR023627 Recombination protein RecR RY45_18775 1a7c443848efb0fc9cd2ad164a1d1c9e 369 Pfam PF00437 Type II/IV secretion system protein 118 268 2.1E-36 T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_18775 1a7c443848efb0fc9cd2ad164a1d1c9e 369 Gene3D G3DSA:3.30.450.90 1 99 1.0E-23 T 14-10-2018 RY45_18775 1a7c443848efb0fc9cd2ad164a1d1c9e 369 SUPERFAMILY SSF52540 3 337 5.11E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18775 1a7c443848efb0fc9cd2ad164a1d1c9e 369 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 344 1.1E-124 T 14-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 RY45_18775 1a7c443848efb0fc9cd2ad164a1d1c9e 369 Gene3D G3DSA:3.40.50.300 101 354 1.0E-82 T 14-10-2018 RY45_05360 16aa6ea6f93c792fa03f1b2a7747a089 322 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 48 250 4.1E-56 T 14-10-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN RY45_05360 16aa6ea6f93c792fa03f1b2a7747a089 322 Gene3D G3DSA:1.10.8.760 149 213 4.7E-23 T 14-10-2018 RY45_05360 16aa6ea6f93c792fa03f1b2a7747a089 322 SUPERFAMILY SSF159501 28 267 1.74E-66 T 14-10-2018 RY45_05360 16aa6ea6f93c792fa03f1b2a7747a089 322 Gene3D G3DSA:3.40.50.11550 37 263 4.7E-23 T 14-10-2018 RY45_19870 47823f823eacc0cdc189f60a92fc5f23 99 Gene3D G3DSA:2.60.200.60 60 97 7.3E-6 T 14-10-2018 RY45_19870 47823f823eacc0cdc189f60a92fc5f23 99 Gene3D G3DSA:2.60.200.60 1 59 4.6E-7 T 14-10-2018 RY45_19870 47823f823eacc0cdc189f60a92fc5f23 99 Pfam PF05488 PAAR motif 20 90 6.1E-17 T 14-10-2018 IPR008727 PAAR motif RY45_06075 f2008674fb8a70d3d850fa79fd0824f1 459 SUPERFAMILY SSF103473 20 451 1.57E-35 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_06075 f2008674fb8a70d3d850fa79fd0824f1 459 Gene3D G3DSA:1.20.1250.20 263 457 1.7E-9 T 14-10-2018 RY45_06075 f2008674fb8a70d3d850fa79fd0824f1 459 Pfam PF13000 Acetyl-coenzyme A transporter 1 23 112 1.9E-9 T 14-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 RY45_06075 f2008674fb8a70d3d850fa79fd0824f1 459 Gene3D G3DSA:1.20.1250.20 15 216 1.5E-11 T 14-10-2018 RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 14-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 PRINTS PR00124 ATP synthase C subunit signature 33 48 2.3E-8 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 PRINTS PR00124 ATP synthase C subunit signature 12 31 2.3E-8 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 PRINTS PR00124 ATP synthase C subunit signature 50 75 2.3E-8 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 SUPERFAMILY SSF81333 3 77 6.54E-18 T 14-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 Gene3D G3DSA:1.20.20.10 1 79 2.4E-33 T 14-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 13.887 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 8.8E-31 T 14-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RY45_22150 de6bf4743b9fca8ccf8e49607658d07c 80 Pfam PF00137 ATP synthase subunit C 11 69 1.4E-9 T 14-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 SMART SM00382 30 213 1.3E-19 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 Gene3D G3DSA:2.40.50.940 224 279 8.4E-13 T 14-10-2018 RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 Gene3D G3DSA:2.40.50.140 280 330 8.4E-13 T 14-10-2018 RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 3 357 3.0E-146 T 14-10-2018 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 Pfam PF08402 TOBE domain 273 359 1.3E-7 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 SUPERFAMILY SSF50331 239 362 8.22E-12 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 SUPERFAMILY SSF52540 6 243 1.04E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 Pfam PF00005 ABC transporter 21 163 7.5E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_10375 24671d914e2876af391d2fa4251ed1f5 364 Gene3D G3DSA:3.40.50.300 5 223 3.9E-70 T 14-10-2018 RY45_21975 f23251084fc04fb4420e8bd7d9ba2613 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 2.5E-13 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_21975 f23251084fc04fb4420e8bd7d9ba2613 214 Gene3D G3DSA:1.10.357.10 1 211 1.9E-76 T 14-10-2018 RY45_21975 f23251084fc04fb4420e8bd7d9ba2613 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 9.8E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_21975 f23251084fc04fb4420e8bd7d9ba2613 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 9.8E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_21975 f23251084fc04fb4420e8bd7d9ba2613 214 Pfam PF13972 Bacterial transcriptional repressor 56 197 8.8E-44 T 14-10-2018 IPR025722 Bacterial transcriptional repressor TetR RY45_21975 f23251084fc04fb4420e8bd7d9ba2613 214 SUPERFAMILY SSF46689 2 72 2.18E-17 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Pfam PF01627 Hpt domain 1056 1129 6.6E-5 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 673 787 1.1E-25 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SUPERFAMILY SSF55874 616 787 2.49E-43 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SUPERFAMILY SSF53850 281 499 4.35E-32 T 14-10-2018 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Pfam PF00512 His Kinase A (phospho-acceptor) domain 562 626 1.1E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Gene3D G3DSA:1.20.120.160 1037 1137 3.1E-5 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Gene3D G3DSA:3.40.50.2300 908 1026 7.4E-38 T 14-10-2018 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SUPERFAMILY SSF47384 548 628 1.1E-19 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 PRINTS PR00344 Bacterial sensor protein C-terminal signature 714 728 9.2E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 PRINTS PR00344 Bacterial sensor protein C-terminal signature 749 767 9.2E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 PRINTS PR00344 Bacterial sensor protein C-terminal signature 773 786 9.2E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 PRINTS PR00344 Bacterial sensor protein C-terminal signature 732 742 9.2E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Pfam PF00072 Response regulator receiver domain 912 1022 2.4E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Gene3D G3DSA:3.40.190.10 36 251 3.1E-45 T 14-10-2018 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SMART SM00388 561 626 7.9E-21 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 281 496 1.0E-22 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Gene3D G3DSA:3.40.190.10 121 214 3.1E-45 T 14-10-2018 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Gene3D G3DSA:3.40.190.10 365 459 5.3E-50 T 14-10-2018 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Gene3D G3DSA:3.30.565.10 625 793 5.3E-47 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SUPERFAMILY SSF52172 908 1025 1.14E-35 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SMART SM00387 673 789 7.2E-34 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SUPERFAMILY SSF53850 38 254 4.53E-38 T 14-10-2018 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Gene3D G3DSA:3.40.190.10 270 495 5.3E-50 T 14-10-2018 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 253 3.1E-28 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SMART SM00448 909 1022 7.1E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SUPERFAMILY SSF47226 1005 1124 1.15E-8 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 Gene3D G3DSA:1.10.287.130 531 624 2.8E-24 T 14-10-2018 RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SMART SM00062 37 255 1.8E-17 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_05605 55ae137c767add9ea1635b15c2536943 1142 SMART SM00062 280 499 1.9E-15 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 416 577 1.5E-33 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 SMART SM00304 304 356 3.5 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 SMART SM00304 212 264 2.7E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 SUPERFAMILY SSF58104 324 591 3.79E-64 T 14-10-2018 RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 Gene3D G3DSA:1.20.1480.50 171 271 8.2E-12 T 14-10-2018 RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 183 4.3E-20 T 14-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 SMART SM00283 357 590 2.8E-65 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 Gene3D G3DSA:1.10.287.950 303 592 1.4E-70 T 14-10-2018 RY45_05660 cabe2c3ba26fe4f7c5879aa54ffb4c64 640 SUPERFAMILY SSF158472 212 263 1.7E-9 T 14-10-2018 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 Pfam PF12697 Alpha/beta hydrolase family 12 242 8.3E-23 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 35 50 1.9E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 78 91 1.9E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 1.9E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 PRINTS PR00412 Epoxide hydrolase signature 35 50 8.9E-8 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 PRINTS PR00412 Epoxide hydrolase signature 78 91 8.9E-8 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 PRINTS PR00412 Epoxide hydrolase signature 92 105 8.9E-8 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 PRINTS PR00412 Epoxide hydrolase signature 227 249 8.9E-8 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 Gene3D G3DSA:3.40.50.1820 2 251 9.0E-71 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_08345 9f28b63c9081b0b0d4871aa827bf50ed 254 SUPERFAMILY SSF53474 2 250 1.99E-56 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_11175 ae9fb075b8412736b316bc276be0c207 385 SUPERFAMILY SSF48208 9 382 5.26E-83 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RY45_11175 ae9fb075b8412736b316bc276be0c207 385 Gene3D G3DSA:1.50.10.10 1 384 2.1E-75 T 14-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RY45_11175 ae9fb075b8412736b316bc276be0c207 385 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 34 373 5.3E-52 T 14-10-2018 RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 Pfam PF00207 Alpha-2-macroglobulin family 954 1039 9.6E-7 T 14-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 278 371 4.7E-23 T 14-10-2018 RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 SMART SM01360 953 1042 1.1E-20 T 14-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 Gene3D G3DSA:1.50.10.20 1153 1416 9.7E-20 T 14-10-2018 RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 Pfam PF01835 MG2 domain 377 469 1.2E-16 T 14-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 SMART SM01359 736 891 3.3E-28 T 14-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 737 891 1.3E-9 T 14-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 PIRSF PIRSF038980 42 1628 0.0 T 14-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 SUPERFAMILY SSF48239 1157 1410 3.31E-32 T 14-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RY45_09250 c2c18729c284460a2adf5380c177f9c0 1629 Gene3D G3DSA:2.60.40.1930 376 474 1.7E-5 T 14-10-2018 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Gene3D G3DSA:3.40.120.10 173 361 7.4E-66 T 14-10-2018 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 440 2.1E-14 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 441 5.2E-199 T 14-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 SUPERFAMILY SSF53738 155 255 2.47E-30 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Gene3D G3DSA:3.40.120.10 256 338 7.4E-66 T 14-10-2018 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 SUPERFAMILY SSF53738 257 364 1.06E-30 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 443 48.105 T 14-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 135 3.4E-46 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 366 1.7E-32 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 253 9.7E-20 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 SUPERFAMILY SSF55957 356 443 5.76E-22 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 SUPERFAMILY SSF53738 2 180 4.71E-49 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Gene3D G3DSA:3.30.310.50 369 444 2.6E-26 T 14-10-2018 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 2.1E-14 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 2.1E-14 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 2.1E-14 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_17070 b7c1fd234119e3ba234c4448c938e86e 444 Gene3D G3DSA:3.40.120.10 2 153 4.4E-50 T 14-10-2018 RY45_21780 44fdf23ac8391a5318d71b73d4dc78bb 477 SUPERFAMILY SSF55961 330 469 7.22E-12 T 14-10-2018 RY45_21780 44fdf23ac8391a5318d71b73d4dc78bb 477 SUPERFAMILY SSF51735 2 287 1.25E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21780 44fdf23ac8391a5318d71b73d4dc78bb 477 Pfam PF13460 NAD(P)H-binding 8 110 4.1E-13 T 14-10-2018 IPR016040 NAD(P)-binding domain RY45_21780 44fdf23ac8391a5318d71b73d4dc78bb 477 Gene3D G3DSA:3.40.50.720 5 291 3.7E-38 T 14-10-2018 RY45_21780 44fdf23ac8391a5318d71b73d4dc78bb 477 Pfam PF11066 Protein of unknown function (DUF2867) 330 459 4.8E-17 T 14-10-2018 IPR021295 Protein of unknown function DUF2867 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SUPERFAMILY SSF56091 2 315 7.2E-117 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Hamap MF_01588 DNA ligase [ligA]. 2 666 52.036 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 14-10-2018 IPR018239 NAD-dependent DNA ligase, active site RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Gene3D G3DSA:1.10.150.20 431 504 8.6E-30 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Gene3D G3DSA:3.30.470.90 69 316 1.9E-96 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 662 1.4E-257 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 330 345 - T 14-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SMART SM00292 592 668 1.4E-11 T 14-10-2018 IPR001357 BRCT domain RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SUPERFAMILY SSF50249 317 398 9.59E-29 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Pfam PF14520 Helix-hairpin-helix domain 446 498 1.2E-4 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Gene3D G3DSA:2.20.70.80 390 430 4.1E-19 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 406 433 6.7E-11 T 14-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SUPERFAMILY SSF52113 590 666 8.97E-20 T 14-10-2018 IPR036420 BRCT domain superfamily RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 321 397 5.3E-36 T 14-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SMART SM00532 3 447 1.4E-270 T 14-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Gene3D G3DSA:1.10.150.20 505 584 7.0E-29 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 592 664 9.7E-13 T 14-10-2018 IPR001357 BRCT domain RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Pfam PF12826 Helix-hairpin-helix motif 509 571 2.5E-22 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SMART SM00278 445 464 40.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SMART SM00278 543 562 1300.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SMART SM00278 511 530 150.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SMART SM00278 479 498 13.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Gene3D G3DSA:2.40.50.140 317 389 3.1E-34 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 6 317 2.5E-125 T 14-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 PIRSF PIRSF001604 1 668 1.1E-243 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Gene3D G3DSA:1.10.287.610 1 68 3.2E-24 T 14-10-2018 RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 SUPERFAMILY SSF47781 403 582 2.04E-60 T 14-10-2018 IPR010994 RuvA domain 2-like RY45_06570 d599d3b1e3bd57205035affd9d21c9a6 668 Gene3D G3DSA:3.40.50.10190 585 667 9.7E-27 T 14-10-2018 IPR036420 BRCT domain superfamily RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00388 711 776 1.0E-21 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF13493 Domain of unknown function (DUF4118) 21 125 3.0E-20 T 14-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 316 392 9.2E-7 T 14-10-2018 IPR000014 PAS domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 138 264 1.2E-28 T 14-10-2018 IPR000014 PAS domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 558 680 1.8E-21 T 14-10-2018 IPR000014 PAS domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 432 558 9.5E-16 T 14-10-2018 IPR000014 PAS domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF00072 Response regulator receiver domain 965 1076 2.0E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 822 936 1.4E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00448 963 1076 9.7E-39 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SUPERFAMILY SSF55874 765 933 2.62E-43 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF13426 PAS domain 569 672 2.6E-16 T 14-10-2018 IPR000014 PAS domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:3.30.450.20 138 268 9.6E-29 T 14-10-2018 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF01627 Hpt domain 1130 1207 2.8E-10 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 PRINTS PR00344 Bacterial sensor protein C-terminal signature 898 916 1.7E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 PRINTS PR00344 Bacterial sensor protein C-terminal signature 922 935 1.7E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 PRINTS PR00344 Bacterial sensor protein C-terminal signature 881 891 1.7E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 PRINTS PR00344 Bacterial sensor protein C-terminal signature 863 877 1.7E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:3.30.450.20 557 701 2.0E-37 T 14-10-2018 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:3.30.450.20 269 337 7.9E-11 T 14-10-2018 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:3.30.450.20 431 501 3.2E-18 T 14-10-2018 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SUPERFAMILY SSF55785 548 671 1.73E-29 T 14-10-2018 IPR035965 PAS domain superfamily RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:1.20.120.160 1107 1214 5.6E-17 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SUPERFAMILY SSF55785 129 253 1.26E-25 T 14-10-2018 IPR035965 PAS domain superfamily RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00091 142 208 1.2E-12 T 14-10-2018 IPR000014 PAS domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00091 559 625 3.6E-6 T 14-10-2018 IPR000014 PAS domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00091 436 503 1.4E-6 T 14-10-2018 IPR000014 PAS domain RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SUPERFAMILY SSF47384 697 778 3.53E-22 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:1.10.287.130 702 777 2.7E-26 T 14-10-2018 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00086 631 673 1.3E-8 T 14-10-2018 IPR001610 PAC motif RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00086 343 385 0.0016 T 14-10-2018 IPR001610 PAC motif RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00086 215 257 3.2E-7 T 14-10-2018 IPR001610 PAC motif RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00086 509 551 6.2E-9 T 14-10-2018 IPR001610 PAC motif RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:1.20.120.620 16 119 1.2E-10 T 14-10-2018 IPR038318 KdpD, transmembrane domain superfamily RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SUPERFAMILY SSF55785 443 554 3.87E-25 T 14-10-2018 IPR035965 PAS domain superfamily RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SUPERFAMILY SSF47226 1059 1193 6.15E-19 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF00512 His Kinase A (phospho-acceptor) domain 711 776 9.9E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:2.10.70.100 340 386 7.2E-11 T 14-10-2018 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:2.10.70.100 506 553 2.3E-16 T 14-10-2018 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SUPERFAMILY SSF52172 962 1088 6.55E-40 T 14-10-2018 IPR011006 CheY-like superfamily RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SUPERFAMILY SSF55785 256 383 1.92E-14 T 14-10-2018 IPR035965 PAS domain superfamily RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 SMART SM00387 822 938 1.1E-35 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:3.40.50.2300 959 1098 1.6E-43 T 14-10-2018 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF08447 PAS fold 293 379 2.8E-9 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF08447 PAS fold 166 251 2.8E-13 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Pfam PF08447 PAS fold 459 545 5.8E-19 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_11895 16b042536a7c3bea5ec38bfc97f93167 1323 Gene3D G3DSA:3.30.565.10 778 940 6.6E-49 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 Gene3D G3DSA:3.30.565.10 399 555 6.2E-50 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 Gene3D G3DSA:1.10.287.130 309 396 1.0E-25 T 14-10-2018 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 Pfam PF00072 Response regulator receiver domain 577 686 2.2E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 445 553 9.1E-33 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 534 3.7E-19 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 495 3.7E-19 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 509 3.7E-19 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 553 3.7E-19 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 SUPERFAMILY SSF52172 574 691 5.69E-41 T 14-10-2018 IPR011006 CheY-like superfamily RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 Gene3D G3DSA:3.40.50.12740 575 697 3.1E-42 T 14-10-2018 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 SUPERFAMILY SSF55874 387 554 5.37E-49 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 Pfam PF00512 His Kinase A (phospho-acceptor) domain 333 397 1.4E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 Gene3D G3DSA:3.30.450.40 4 184 8.4E-6 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 Gene3D G3DSA:3.30.450.20 195 308 2.1E-7 T 14-10-2018 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 SUPERFAMILY SSF55785 195 310 6.05E-7 T 14-10-2018 IPR035965 PAS domain superfamily RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 SUPERFAMILY SSF47384 318 398 1.92E-19 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 SMART SM00387 445 556 3.7E-40 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 SMART SM00388 333 398 2.9E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 SMART SM00448 575 686 2.5E-37 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_14730 d0c9e91cdf0f169d52c4ad9f2d4346d2 698 SUPERFAMILY SSF55781 51 189 4.32E-5 T 14-10-2018 RY45_08975 2b8145a7b9c0473814e1ce9b270bfe35 479 SUPERFAMILY SSF53383 93 465 3.13E-90 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_08975 2b8145a7b9c0473814e1ce9b270bfe35 479 SMART SM00345 7 66 1.1E-15 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_08975 2b8145a7b9c0473814e1ce9b270bfe35 479 Gene3D G3DSA:1.10.10.10 2 68 2.4E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_08975 2b8145a7b9c0473814e1ce9b270bfe35 479 Gene3D G3DSA:3.90.1150.10 95 464 1.9E-94 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_08975 2b8145a7b9c0473814e1ce9b270bfe35 479 Gene3D G3DSA:3.40.640.10 140 358 1.9E-94 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_08975 2b8145a7b9c0473814e1ce9b270bfe35 479 Pfam PF00155 Aminotransferase class I and II 146 444 1.1E-30 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_08975 2b8145a7b9c0473814e1ce9b270bfe35 479 SUPERFAMILY SSF46785 1 70 1.58E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08975 2b8145a7b9c0473814e1ce9b270bfe35 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 7.3E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 Pfam PF01168 Alanine racemase, N-terminal domain 46 269 1.6E-47 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 Hamap MF_01201 Alanine racemase. 39 407 25.41 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 TIGRFAM TIGR00492 alr: alanine racemase 42 378 7.8E-67 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 Pfam PF00842 Alanine racemase, C-terminal domain 279 388 7.4E-33 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 71 81 - T 14-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 SUPERFAMILY SSF51419 46 269 1.48E-46 T 14-10-2018 IPR029066 PLP-binding barrel RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 Gene3D G3DSA:3.20.20.10 48 266 2.3E-153 T 14-10-2018 IPR029066 PLP-binding barrel RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 SMART SM01005 279 407 5.9E-49 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 PRINTS PR00992 Alanine racemase signature 312 327 1.3E-36 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 PRINTS PR00992 Alanine racemase signature 164 176 1.3E-36 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 PRINTS PR00992 Alanine racemase signature 200 211 1.3E-36 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 PRINTS PR00992 Alanine racemase signature 66 82 1.3E-36 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 PRINTS PR00992 Alanine racemase signature 333 350 1.3E-36 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 PRINTS PR00992 Alanine racemase signature 295 310 1.3E-36 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 PRINTS PR00992 Alanine racemase signature 102 120 1.3E-36 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 PRINTS PR00992 Alanine racemase signature 243 270 1.3E-36 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 Gene3D G3DSA:2.40.37.10 42 403 2.3E-153 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_13530 6c1903c637fd872f039db0be5d3cb16a 408 SUPERFAMILY SSF50621 273 406 1.29E-40 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_02940 a47e7568518d6227d24c732f328a36ac 234 SUPERFAMILY SSF53098 75 191 3.29E-7 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_02940 a47e7568518d6227d24c732f328a36ac 234 Pfam PF13610 DDE domain 75 212 8.6E-49 T 14-10-2018 IPR032874 DDE domain RY45_02905 a47e7568518d6227d24c732f328a36ac 234 SUPERFAMILY SSF53098 75 191 3.29E-7 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_02905 a47e7568518d6227d24c732f328a36ac 234 Pfam PF13610 DDE domain 75 212 8.6E-49 T 14-10-2018 IPR032874 DDE domain RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 TIGRFAM TIGR00016 ackA: acetate kinase 2 397 1.2E-170 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 SUPERFAMILY SSF53067 3 198 1.44E-62 T 14-10-2018 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 SUPERFAMILY SSF53067 159 398 2.59E-85 T 14-10-2018 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 PRINTS PR00471 Acetate kinase family signature 205 226 3.9E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 PRINTS PR00471 Acetate kinase family signature 5 16 3.9E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 PRINTS PR00471 Acetate kinase family signature 301 314 3.9E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 PRINTS PR00471 Acetate kinase family signature 324 340 3.9E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 PRINTS PR00471 Acetate kinase family signature 175 188 3.9E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 PRINTS PR00471 Acetate kinase family signature 379 391 3.9E-48 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 Gene3D G3DSA:3.30.420.40 2 197 6.8E-72 T 14-10-2018 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 Pfam PF00871 Acetokinase family 5 391 2.1E-163 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 205 222 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 PIRSF PIRSF000722 1 400 1.2E-142 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 Gene3D G3DSA:3.30.420.40 198 399 4.9E-86 T 14-10-2018 RY45_04950 3d5b18965dd88ca509c8650df462f64a 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 189.187 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_00245 1dcc508ac7d0d26f48bd8f489b877528 146 Gene3D G3DSA:3.40.50.620 5 146 6.0E-45 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_00245 1dcc508ac7d0d26f48bd8f489b877528 146 SUPERFAMILY SSF52402 6 143 1.67E-30 T 14-10-2018 RY45_00245 1dcc508ac7d0d26f48bd8f489b877528 146 Pfam PF00582 Universal stress protein family 6 143 3.2E-21 T 14-10-2018 IPR006016 UspA RY45_00245 1dcc508ac7d0d26f48bd8f489b877528 146 PIRSF PIRSF006276 1 146 7.7E-51 T 14-10-2018 IPR006015 Universal stress protein A RY45_16035 37bc50c8ab6e1c07307a434386048097 390 SUPERFAMILY SSF103473 14 388 1.57E-49 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_16035 37bc50c8ab6e1c07307a434386048097 390 Gene3D G3DSA:1.20.1250.20 209 389 3.4E-21 T 14-10-2018 RY45_16035 37bc50c8ab6e1c07307a434386048097 390 Gene3D G3DSA:1.20.1250.20 13 197 2.7E-19 T 14-10-2018 RY45_16035 37bc50c8ab6e1c07307a434386048097 390 Pfam PF07690 Major Facilitator Superfamily 19 343 6.7E-32 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_21270 b8ff24fed0e95658762745ffdc2899ea 250 Gene3D G3DSA:3.40.190.10 110 206 7.2E-27 T 14-10-2018 RY45_21270 b8ff24fed0e95658762745ffdc2899ea 250 SUPERFAMILY SSF53850 24 248 2.06E-33 T 14-10-2018 RY45_21270 b8ff24fed0e95658762745ffdc2899ea 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 249 1.2E-22 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_21270 b8ff24fed0e95658762745ffdc2899ea 250 Gene3D G3DSA:3.40.190.10 33 248 7.2E-27 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 14-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Gene3D G3DSA:3.30.230.10 221 392 2.1E-75 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 SUPERFAMILY SSF54211 221 391 8.54E-61 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 731 792 5.8E-30 T 14-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 114 128 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 420 434 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 71 84 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 505 522 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 735 751 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 36 51 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 487 503 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 525 537 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR00418 DNA topoisomerase II family signature 268 281 9.6E-72 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 SUPERFAMILY SSF56719 394 794 3.4E-86 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 SUPERFAMILY SSF55874 6 218 8.66E-76 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Pfam PF00204 DNA gyrase B 221 390 1.2E-59 T 14-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 SMART SM00387 32 176 3.7E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 3 803 106.794 T 14-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 6 803 0.0 T 14-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Gene3D G3DSA:3.10.20.690 592 682 9.5E-26 T 14-10-2018 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Gene3D G3DSA:3.30.565.10 2 220 3.6E-93 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 174 5.0E-22 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 756 768 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 470 479 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 6 16 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 360 374 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 374 394 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 312 328 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 220 242 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 PRINTS PR01159 DNA gyrase subunit B signature 772 788 1.4E-79 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Gene3D G3DSA:3.40.50.670 398 570 3.1E-73 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Gene3D G3DSA:3.40.50.670 683 803 1.4E-25 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 SMART SM00433 36 796 1.3E-279 T 14-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_00020 29ed477e5d415f58d5da943ba9d6fa67 803 Pfam PF01751 Toprim domain 419 531 1.8E-18 T 14-10-2018 IPR006171 TOPRIM domain RY45_18170 82fd2d4ebe093168916890ac448145c5 499 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 51 473 6.2E-158 T 14-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 RY45_18170 82fd2d4ebe093168916890ac448145c5 499 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 37 494 37.88 T 14-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 RY45_18170 82fd2d4ebe093168916890ac448145c5 499 Pfam PF12626 Polymerase A arginine-rich C-terminus 356 493 3.8E-40 T 14-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain RY45_18170 82fd2d4ebe093168916890ac448145c5 499 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 238 299 7.4E-22 T 14-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RY45_18170 82fd2d4ebe093168916890ac448145c5 499 Gene3D G3DSA:3.30.460.10 47 207 3.9E-61 T 14-10-2018 RY45_18170 82fd2d4ebe093168916890ac448145c5 499 SUPERFAMILY SSF81891 210 444 2.22E-47 T 14-10-2018 RY45_18170 82fd2d4ebe093168916890ac448145c5 499 SUPERFAMILY SSF81301 52 208 1.74E-39 T 14-10-2018 RY45_18170 82fd2d4ebe093168916890ac448145c5 499 Gene3D G3DSA:1.10.3090.10 210 457 2.4E-92 T 14-10-2018 RY45_18170 82fd2d4ebe093168916890ac448145c5 499 Pfam PF01743 Poly A polymerase head domain 80 210 4.7E-37 T 14-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RY45_08080 c283b1b3e755ed42649cf2c69d74e656 379 Pfam PF01546 Peptidase family M20/M25/M40 78 374 7.4E-25 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 RY45_08080 c283b1b3e755ed42649cf2c69d74e656 379 Gene3D G3DSA:3.40.630.10 17 366 1.5E-106 T 14-10-2018 RY45_08080 c283b1b3e755ed42649cf2c69d74e656 379 Pfam PF07687 Peptidase dimerisation domain 180 277 5.1E-20 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain RY45_08080 c283b1b3e755ed42649cf2c69d74e656 379 PIRSF PIRSF037238 1 378 2.2E-134 T 14-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase RY45_08080 c283b1b3e755ed42649cf2c69d74e656 379 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 77 86 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RY45_08080 c283b1b3e755ed42649cf2c69d74e656 379 SUPERFAMILY SSF55031 182 290 5.76E-24 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RY45_08080 c283b1b3e755ed42649cf2c69d74e656 379 SUPERFAMILY SSF53187 7 378 9.69E-42 T 14-10-2018 RY45_08080 c283b1b3e755ed42649cf2c69d74e656 379 Gene3D G3DSA:3.30.70.360 182 291 1.5E-106 T 14-10-2018 RY45_09835 3db76c21ff9ad479d454fddba12cb361 230 SUPERFAMILY SSF52540 5 222 1.92E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09835 3db76c21ff9ad479d454fddba12cb361 230 Gene3D G3DSA:3.40.50.300 2 228 3.8E-85 T 14-10-2018 RY45_09835 3db76c21ff9ad479d454fddba12cb361 230 TIGRFAM TIGR00017 cmk: cytidylate kinase 5 219 1.4E-90 T 14-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RY45_09835 3db76c21ff9ad479d454fddba12cb361 230 Pfam PF02224 Cytidylate kinase 9 221 1.2E-81 T 14-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RY45_09835 3db76c21ff9ad479d454fddba12cb361 230 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 35.109 T 14-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RY45_08735 e6351c8c3de523499ef82ce96a8f2e0c 460 SUPERFAMILY SSF53649 18 460 3.93E-128 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_08735 e6351c8c3de523499ef82ce96a8f2e0c 460 Pfam PF00245 Alkaline phosphatase 29 459 1.9E-104 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08735 e6351c8c3de523499ef82ce96a8f2e0c 460 Gene3D G3DSA:3.40.720.10 3 460 1.6E-141 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_08735 e6351c8c3de523499ef82ce96a8f2e0c 460 SMART SM00098 30 460 6.7E-93 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08735 e6351c8c3de523499ef82ce96a8f2e0c 460 PRINTS PR00113 Alkaline phosphatase signature 276 305 6.3E-41 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08735 e6351c8c3de523499ef82ce96a8f2e0c 460 PRINTS PR00113 Alkaline phosphatase signature 139 159 6.3E-41 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08735 e6351c8c3de523499ef82ce96a8f2e0c 460 PRINTS PR00113 Alkaline phosphatase signature 29 49 6.3E-41 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08735 e6351c8c3de523499ef82ce96a8f2e0c 460 PRINTS PR00113 Alkaline phosphatase signature 193 203 6.3E-41 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 SUPERFAMILY SSF52518 380 570 1.47E-23 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 421 555 1.8E-6 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 19 177 2.5E-30 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 SUPERFAMILY SSF52518 10 193 4.65E-36 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 12 573 34.729 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 SUPERFAMILY SSF52467 230 376 6.91E-10 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 18 445 1.1E-138 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 Pfam PF16582 Middle domain of thiamine pyrophosphate 195 402 5.1E-55 T 14-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 Gene3D G3DSA:3.40.50.1220 224 353 8.4E-39 T 14-10-2018 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 PIRSF PIRSF004983 9 575 2.7E-166 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 Gene3D G3DSA:3.40.50.970 384 574 2.0E-52 T 14-10-2018 RY45_03095 7e807bbdf2e734a35dfdfc1415d39ad9 576 Gene3D G3DSA:3.40.50.970 10 198 1.4E-61 T 14-10-2018 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 Gene3D G3DSA:3.40.50.1220 186 355 8.8E-35 T 14-10-2018 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 SUPERFAMILY SSF52467 186 372 4.21E-34 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 390 535 3.8E-38 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 328 5.8E-24 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 Gene3D G3DSA:3.40.50.970 1 184 4.6E-60 T 14-10-2018 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 SUPERFAMILY SSF52518 9 181 2.85E-44 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 TIGRFAM TIGR02418 acolac_catab: acetolactate synthase, catabolic 9 548 4.5E-244 T 14-10-2018 IPR012782 Acetolactate synthase, catabolic GO:0000287|GO:0003984|GO:0030976|GO:0034077 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 Gene3D G3DSA:3.40.50.970 363 555 9.8E-57 T 14-10-2018 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 173 3.8E-46 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 427 446 - T 14-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RY45_06050 c6891b2f5b052c8c4e02856b56d0d73a 556 SUPERFAMILY SSF52518 367 548 1.26E-51 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_20995 65450c88d173e0cf0e6522b141b18439 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.2E-15 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 3.8E-236 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.649 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 6.0E-58 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.2E-33 T 14-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RY45_20995 65450c88d173e0cf0e6522b141b18439 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site RY45_20995 65450c88d173e0cf0e6522b141b18439 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.5E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 SUPERFAMILY SSF50465 298 393 6.04E-36 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RY45_20995 65450c88d173e0cf0e6522b141b18439 394 Gene3D G3DSA:3.40.50.300 1 203 1.2E-70 T 14-10-2018 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 SUPERFAMILY SSF50447 205 301 3.93E-30 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_20995 65450c88d173e0cf0e6522b141b18439 394 SUPERFAMILY SSF52540 6 219 2.13E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20995 65450c88d173e0cf0e6522b141b18439 394 Gene3D G3DSA:2.40.30.10 206 334 4.1E-53 T 14-10-2018 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.1E-17 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RY45_20995 65450c88d173e0cf0e6522b141b18439 394 Gene3D G3DSA:2.40.30.10 338 393 5.2E-29 T 14-10-2018 RY45_20395 7a2a215e92586bd7522605de517c4755 141 Gene3D G3DSA:2.30.30.220 4 128 1.3E-49 T 14-10-2018 IPR036760 SspB-like superfamily RY45_20395 7a2a215e92586bd7522605de517c4755 141 PIRSF PIRSF005276 4 141 1.1E-54 T 14-10-2018 IPR007481 Stringent starvation protein B RY45_20395 7a2a215e92586bd7522605de517c4755 141 SUPERFAMILY SSF101738 5 113 7.59E-48 T 14-10-2018 IPR036760 SspB-like superfamily RY45_20395 7a2a215e92586bd7522605de517c4755 141 Pfam PF04386 Stringent starvation protein B 10 140 2.5E-35 T 14-10-2018 IPR007481 Stringent starvation protein B RY45_10440 644bd9a8417276b067686c15d42114ba 356 SUPERFAMILY SSF51197 3 282 8.24E-78 T 14-10-2018 RY45_10440 644bd9a8417276b067686c15d42114ba 356 PRINTS PR00682 Isopenicillin N synthase signature 28 45 2.3E-10 T 14-10-2018 RY45_10440 644bd9a8417276b067686c15d42114ba 356 PRINTS PR00682 Isopenicillin N synthase signature 234 260 2.3E-10 T 14-10-2018 RY45_10440 644bd9a8417276b067686c15d42114ba 356 PRINTS PR00682 Isopenicillin N synthase signature 199 220 2.3E-10 T 14-10-2018 RY45_10440 644bd9a8417276b067686c15d42114ba 356 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 176 273 7.6E-19 T 14-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RY45_10440 644bd9a8417276b067686c15d42114ba 356 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 6 129 1.6E-33 T 14-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain RY45_10440 644bd9a8417276b067686c15d42114ba 356 Gene3D G3DSA:2.60.120.330 5 303 4.7E-77 T 14-10-2018 IPR027443 Isopenicillin N synthase-like RY45_17075 32e912367829aa989d5da5b4b129e96c 281 SUPERFAMILY SSF51717 7 273 1.03E-102 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_17075 32e912367829aa989d5da5b4b129e96c 281 Gene3D G3DSA:3.20.20.20 1 277 1.0E-105 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_17075 32e912367829aa989d5da5b4b129e96c 281 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_17075 32e912367829aa989d5da5b4b129e96c 281 Pfam PF00809 Pterin binding enzyme 18 257 1.2E-84 T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_17075 32e912367829aa989d5da5b4b129e96c 281 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_17075 32e912367829aa989d5da5b4b129e96c 281 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 268 1.0E-98 T 14-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 RY45_18590 d966ca8b3092c7dc50afe2fb474f6661 701 Gene3D G3DSA:3.30.450.20 60 285 3.1E-30 T 14-10-2018 RY45_18590 d966ca8b3092c7dc50afe2fb474f6661 701 SMART SM00304 370 424 3.6E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_18590 d966ca8b3092c7dc50afe2fb474f6661 701 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 498 664 2.5E-43 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_18590 d966ca8b3092c7dc50afe2fb474f6661 701 Gene3D G3DSA:3.30.450.20 73 238 3.1E-30 T 14-10-2018 RY45_18590 d966ca8b3092c7dc50afe2fb474f6661 701 Gene3D G3DSA:1.10.287.950 369 701 1.2E-63 T 14-10-2018 RY45_18590 d966ca8b3092c7dc50afe2fb474f6661 701 Pfam PF02743 Cache domain 46 287 1.5E-14 T 14-10-2018 IPR033479 Double Cache domain 1 RY45_18590 d966ca8b3092c7dc50afe2fb474f6661 701 SUPERFAMILY SSF58104 392 700 1.7E-65 T 14-10-2018 RY45_18590 d966ca8b3092c7dc50afe2fb474f6661 701 SMART SM00283 439 700 3.2E-61 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 Gene3D G3DSA:1.20.58.930 363 456 2.1E-222 T 14-10-2018 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 2 632 40.451 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 TIGRFAM TIGR01273 speA: arginine decarboxylase 4 631 5.2E-244 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 Gene3D G3DSA:3.20.20.10 67 346 2.1E-222 T 14-10-2018 IPR029066 PLP-binding barrel RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 91 344 1.9E-49 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 98 116 1.4E-13 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 240 253 1.4E-13 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 334 353 1.4E-13 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 541 554 1.4E-13 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 SUPERFAMILY SSF51419 66 346 9.49E-65 T 14-10-2018 IPR029066 PLP-binding barrel RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PIRSF PIRSF001336 1 633 4.1E-237 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 Gene3D G3DSA:2.40.37.10 13 565 2.1E-222 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 541 562 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 147 162 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 197 219 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 90 104 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 324 341 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 66 81 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 488 513 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 463 484 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 PRINTS PR01180 Arginine decarboxylase signature 173 194 6.2E-68 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 RY45_08855 40cdc365c8e012959e2601ffec2c8923 633 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 278 291 - T 14-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 SUPERFAMILY SSF55120 69 229 1.94E-38 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 Pfam PF00849 RNA pseudouridylate synthase 69 195 1.2E-14 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 SUPERFAMILY SSF55174 7 62 2.06E-13 T 14-10-2018 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 Gene3D G3DSA:3.10.290.10 1 62 1.2E-23 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 SMART SM00363 7 63 4.4E-13 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 226 1.1E-52 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 Pfam PF01479 S4 domain 7 52 3.1E-11 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 Gene3D G3DSA:3.30.70.580 70 229 2.3E-56 T 14-10-2018 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 Gene3D G3DSA:3.30.70.1560 134 207 2.3E-56 T 14-10-2018 RY45_08925 44130bfd1a4938fdeff86cc5afc64c68 344 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 PIRSF PIRSF006107 7 723 0.0 T 14-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 SUPERFAMILY SSF75138 239 360 1.57E-26 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 Gene3D G3DSA:3.40.1390.20 233 375 5.9E-20 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 Pfam PF07085 DRTGG domain 243 354 3.3E-30 T 14-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 Pfam PF01515 Phosphate acetyl/butaryl transferase 401 715 1.8E-127 T 14-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 SUPERFAMILY SSF52540 9 249 1.06E-24 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 SUPERFAMILY SSF53659 402 720 1.85E-95 T 14-10-2018 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 Pfam PF13500 AAA domain 9 240 3.5E-43 T 14-10-2018 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 Gene3D G3DSA:3.40.50.300 6 216 3.5E-14 T 14-10-2018 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 Gene3D G3DSA:3.40.50.10750 539 692 8.3E-136 T 14-10-2018 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 416 715 1.1E-134 T 14-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RY45_04945 e3876a9a8ec484c3dfb56b4a961eb5c1 723 Gene3D G3DSA:3.40.50.10950 408 719 8.3E-136 T 14-10-2018 RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 Pfam PF13393 Histidyl-tRNA synthetase 10 312 4.4E-46 T 14-10-2018 RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 SUPERFAMILY SSF55681 5 320 6.17E-101 T 14-10-2018 RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 SUPERFAMILY SSF52954 328 421 2.45E-21 T 14-10-2018 RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 Pfam PF03129 Anticodon binding domain 331 422 5.0E-9 T 14-10-2018 IPR004154 Anticodon-binding RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 1.1E-154 T 14-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 Gene3D G3DSA:3.40.50.800 326 421 1.4E-22 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 PIRSF PIRSF001549 2 424 8.6E-121 T 14-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 422 33.172 T 14-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 RY45_09595 3fcb253c614e89da824e30a2ee1c6d86 425 Gene3D G3DSA:3.30.930.10 2 323 4.1E-117 T 14-10-2018 RY45_04755 08af829d080dbeb95310a2f17755dc77 184 Gene3D G3DSA:3.40.630.30 3 177 4.4E-50 T 14-10-2018 RY45_04755 08af829d080dbeb95310a2f17755dc77 184 SUPERFAMILY SSF55729 7 175 1.98E-45 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_04755 08af829d080dbeb95310a2f17755dc77 184 Pfam PF13302 Acetyltransferase (GNAT) domain 15 150 7.6E-23 T 14-10-2018 IPR000182 GNAT domain RY45_02005 e9899c2b7defbc58e1193aaa39c8ec7b 618 Pfam PF02254 TrkA-N domain 410 522 1.3E-22 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RY45_02005 e9899c2b7defbc58e1193aaa39c8ec7b 618 Pfam PF00999 Sodium/hydrogen exchanger family 11 377 2.8E-66 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RY45_02005 e9899c2b7defbc58e1193aaa39c8ec7b 618 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 288 2.6E-81 T 14-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 RY45_02005 e9899c2b7defbc58e1193aaa39c8ec7b 618 Gene3D G3DSA:3.40.50.720 407 568 1.8E-33 T 14-10-2018 RY45_02005 e9899c2b7defbc58e1193aaa39c8ec7b 618 Gene3D G3DSA:1.20.1530.20 2 384 2.6E-87 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily RY45_02005 e9899c2b7defbc58e1193aaa39c8ec7b 618 SUPERFAMILY SSF51735 409 532 3.26E-29 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Gene3D G3DSA:3.30.559.30 199 429 2.2E-50 T 14-10-2018 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 SUPERFAMILY SSF47336 951 1020 1.07E-16 T 14-10-2018 IPR036736 ACP-like superfamily RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 SUPERFAMILY SSF52777 184 425 8.45E-37 T 14-10-2018 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 SUPERFAMILY SSF52777 6 176 6.67E-29 T 14-10-2018 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Gene3D G3DSA:1.10.1200.10 948 1026 1.6E-20 T 14-10-2018 IPR036736 ACP-like superfamily RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 SUPERFAMILY SSF56801 446 967 1.57E-118 T 14-10-2018 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Pfam PF00550 Phosphopantetheine attachment site 956 1019 3.3E-15 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Pfam PF00501 AMP-binding enzyme 457 850 4.9E-77 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 SMART SM00823 Phosphopantetheine attachment site 954 1023 5.4E-9 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 ProSitePatterns PS00455 Putative AMP-binding domain signature. 596 607 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Gene3D G3DSA:3.30.300.30 847 943 8.2E-22 T 14-10-2018 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Gene3D G3DSA:3.30.559.10 6 198 1.5E-41 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Pfam PF13193 AMP-binding enzyme C-terminal domain 859 930 5.0E-10 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Pfam PF00668 Condensation domain 4 424 1.5E-43 T 14-10-2018 IPR001242 Condensation domain RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 Gene3D G3DSA:3.40.50.12780 449 843 2.0E-101 T 14-10-2018 RY45_12865 f7783c186b590a38cdda0c4aec92a9ea 1034 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 475 875 2.1E-104 T 14-10-2018 IPR010071 Amino acid adenylation domain RY45_13045 9aeba953d39d6771004018e4a30f5aaf 334 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 4 334 6.7E-129 T 14-10-2018 IPR011854 Carbamoyl dehydratase HypE RY45_13045 9aeba953d39d6771004018e4a30f5aaf 334 SUPERFAMILY SSF56042 158 329 2.09E-40 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_13045 9aeba953d39d6771004018e4a30f5aaf 334 SUPERFAMILY SSF55326 3 149 5.23E-33 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_13045 9aeba953d39d6771004018e4a30f5aaf 334 Gene3D G3DSA:3.30.1330.10 6 150 1.4E-49 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RY45_13045 9aeba953d39d6771004018e4a30f5aaf 334 Pfam PF02769 AIR synthase related protein, C-terminal domain 162 312 1.6E-22 T 14-10-2018 IPR010918 PurM-like, C-terminal domain RY45_13045 9aeba953d39d6771004018e4a30f5aaf 334 PIRSF PIRSF005644 1 334 3.6E-118 T 14-10-2018 IPR011854 Carbamoyl dehydratase HypE RY45_13045 9aeba953d39d6771004018e4a30f5aaf 334 Pfam PF00586 AIR synthase related protein, N-terminal domain 36 146 3.1E-16 T 14-10-2018 IPR016188 PurM-like, N-terminal domain RY45_13045 9aeba953d39d6771004018e4a30f5aaf 334 Gene3D G3DSA:3.90.650.10 156 334 1.2E-48 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RY45_14365 d179316ab0b806d8ba302d3c845b9bd4 126 Pfam PF01219 Prokaryotic diacylglycerol kinase 17 117 2.2E-32 T 14-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 RY45_14365 d179316ab0b806d8ba302d3c845b9bd4 126 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 71 82 - T 14-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 RY45_14365 d179316ab0b806d8ba302d3c845b9bd4 126 Gene3D G3DSA:1.10.3830.10 4 122 7.3E-37 T 14-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 RY45_20375 185759d581aca4097c38cf816a0a43f4 595 Pfam PF04348 LppC putative lipoprotein 10 554 5.2E-114 T 14-10-2018 IPR007443 Penicillin-binding protein activator LpoA RY45_20375 185759d581aca4097c38cf816a0a43f4 595 Gene3D G3DSA:3.40.50.2300 327 548 2.8E-64 T 14-10-2018 RY45_20375 185759d581aca4097c38cf816a0a43f4 595 Gene3D G3DSA:1.25.40.10 3 113 4.7E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_20375 185759d581aca4097c38cf816a0a43f4 595 SUPERFAMILY SSF53822 225 557 1.32E-68 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_20375 185759d581aca4097c38cf816a0a43f4 595 Gene3D G3DSA:1.25.40.650 117 225 1.6E-19 T 14-10-2018 RY45_20375 185759d581aca4097c38cf816a0a43f4 595 Gene3D G3DSA:3.40.50.2300 228 547 2.8E-64 T 14-10-2018 RY45_07690 392ec324428a50c0e6af93bca5beccee 192 Pfam PF05869 DNA N-6-adenine-methyltransferase (Dam) 7 185 1.1E-40 T 14-10-2018 IPR008593 DNA N-6-adenine-methyltransferase GO:0003677|GO:0009007|GO:0032775 RY45_07690 392ec324428a50c0e6af93bca5beccee 192 TIGRFAM TIGR01712 phage_N6A_met: phage N-6-adenine-methyltransferase 5 177 9.8E-35 T 14-10-2018 IPR008593 DNA N-6-adenine-methyltransferase GO:0003677|GO:0009007|GO:0032775 RY45_11870 53835ad432ef241cd92957717b1811af 383 Gene3D G3DSA:3.30.230.40 164 254 1.6E-37 T 14-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 RY45_11870 53835ad432ef241cd92957717b1811af 383 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 145 9.8E-44 T 14-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 RY45_11870 53835ad432ef241cd92957717b1811af 383 SUPERFAMILY SSF54211 167 251 4.55E-32 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_11870 53835ad432ef241cd92957717b1811af 383 Gene3D G3DSA:3.40.50.1000 1 163 1.8E-42 T 14-10-2018 IPR023214 HAD superfamily RY45_11870 53835ad432ef241cd92957717b1811af 383 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 149 2.3E-26 T 14-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 RY45_11870 53835ad432ef241cd92957717b1811af 383 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 383 49.318 T 14-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 RY45_11870 53835ad432ef241cd92957717b1811af 383 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 365 3.1E-61 T 14-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RY45_11870 53835ad432ef241cd92957717b1811af 383 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 14-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RY45_11870 53835ad432ef241cd92957717b1811af 383 SUPERFAMILY SSF54211 289 369 5.31E-20 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_11870 53835ad432ef241cd92957717b1811af 383 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 383 31.728 T 14-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RY45_11870 53835ad432ef241cd92957717b1811af 383 Pfam PF13242 HAD-hyrolase-like 103 146 6.0E-6 T 14-10-2018 RY45_11870 53835ad432ef241cd92957717b1811af 383 SUPERFAMILY SSF56784 1 157 7.17E-38 T 14-10-2018 IPR036412 HAD-like superfamily RY45_11870 53835ad432ef241cd92957717b1811af 383 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 4 162 8.6E-69 T 14-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 RY45_11870 53835ad432ef241cd92957717b1811af 383 Gene3D G3DSA:3.30.230.40 283 383 2.3E-26 T 14-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 RY45_07145 60d6baa2f4ad9c26a09a1373b02da0da 348 SUPERFAMILY SSF111369 46 191 1.29E-18 T 14-10-2018 RY45_07145 60d6baa2f4ad9c26a09a1373b02da0da 348 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 344 7.4E-55 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_07145 60d6baa2f4ad9c26a09a1373b02da0da 348 Gene3D G3DSA:2.40.420.20 254 345 3.7E-14 T 14-10-2018 RY45_07145 60d6baa2f4ad9c26a09a1373b02da0da 348 Gene3D G3DSA:1.10.287.470 87 160 1.7E-30 T 14-10-2018 RY45_07145 60d6baa2f4ad9c26a09a1373b02da0da 348 Gene3D G3DSA:2.40.50.100 53 195 1.7E-30 T 14-10-2018 RY45_07145 60d6baa2f4ad9c26a09a1373b02da0da 348 Gene3D G3DSA:2.40.30.170 47 249 1.7E-30 T 14-10-2018 RY45_07145 60d6baa2f4ad9c26a09a1373b02da0da 348 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 249 4.0E-9 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_12570 2ff69edc638217cd2776eb7744204f79 595 SMART SM00116 219 266 5.8E-4 T 14-10-2018 IPR000644 CBS domain RY45_12570 2ff69edc638217cd2776eb7744204f79 595 Gene3D G3DSA:3.10.580.10 148 272 1.5E-9 T 14-10-2018 RY45_12570 2ff69edc638217cd2776eb7744204f79 595 SMART SM00100 11 126 6.2E-6 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_12570 2ff69edc638217cd2776eb7744204f79 595 Gene3D G3DSA:2.60.120.10 2 136 3.0E-17 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_12570 2ff69edc638217cd2776eb7744204f79 595 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 459 591 9.7E-41 T 14-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding RY45_12570 2ff69edc638217cd2776eb7744204f79 595 Pfam PF03445 Putative nucleotidyltransferase DUF294 291 419 2.0E-36 T 14-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 RY45_12570 2ff69edc638217cd2776eb7744204f79 595 SUPERFAMILY SSF54631 152 265 8.29E-10 T 14-10-2018 RY45_12570 2ff69edc638217cd2776eb7744204f79 595 Pfam PF00027 Cyclic nucleotide-binding domain 31 109 3.6E-9 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_12570 2ff69edc638217cd2776eb7744204f79 595 SUPERFAMILY SSF51206 10 133 6.81E-24 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like RY45_17795 588b6255d2326192dab8d2818f942ba1 181 Gene3D G3DSA:3.30.420.10 1 181 4.2E-70 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_17795 588b6255d2326192dab8d2818f942ba1 181 SMART SM00479 7 180 1.1E-17 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_17795 588b6255d2326192dab8d2818f942ba1 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 41.921 T 14-10-2018 IPR022894 Oligoribonuclease GO:0000175 RY45_17795 588b6255d2326192dab8d2818f942ba1 181 Pfam PF00929 Exonuclease 9 170 1.1E-36 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_17795 588b6255d2326192dab8d2818f942ba1 181 SUPERFAMILY SSF53098 5 180 4.69E-45 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_01220 a03b0fa769e914a4926aa569c5e7fc95 156 Gene3D G3DSA:3.40.1280.10 1 156 1.2E-66 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_01220 a03b0fa769e914a4926aa569c5e7fc95 156 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 32.936 T 14-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RY45_01220 a03b0fa769e914a4926aa569c5e7fc95 156 SUPERFAMILY SSF75217 2 152 8.5E-45 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_01220 a03b0fa769e914a4926aa569c5e7fc95 156 PIRSF PIRSF029256 1 154 4.6E-66 T 14-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RY45_01220 a03b0fa769e914a4926aa569c5e7fc95 156 Pfam PF00588 SpoU rRNA Methylase family 2 142 2.6E-34 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RY45_01220 a03b0fa769e914a4926aa569c5e7fc95 156 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 9.8E-63 T 14-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 403 8.0E-216 T 14-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 Pfam PF00202 Aminotransferase class-III 19 399 9.2E-128 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 PIRSF PIRSF000521 28 156 1.8E-7 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 PIRSF PIRSF000521 168 402 2.7E-33 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 399 3.7E-151 T 14-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 402 69.693 T 14-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 Gene3D G3DSA:3.40.640.10 59 304 6.5E-151 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 SUPERFAMILY SSF53383 16 399 2.04E-126 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_16405 0dd3cc4a58ec429df32cd3ac2b77c158 405 Gene3D G3DSA:3.90.1150.10 24 392 6.5E-151 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_08660 2328ef0b519a36cd0367ba3030b36517 300 Gene3D G3DSA:3.20.20.330 1 300 1.7E-73 T 14-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RY45_08660 2328ef0b519a36cd0367ba3030b36517 300 SUPERFAMILY SSF82282 3 299 1.02E-80 T 14-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RY45_08660 2328ef0b519a36cd0367ba3030b36517 300 Pfam PF02574 Homocysteine S-methyltransferase 8 298 2.4E-57 T 14-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 RY45_08660 2328ef0b519a36cd0367ba3030b36517 300 PIRSF PIRSF037505 1 300 7.0E-12 T 14-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 RY45_13875 bfcab9c2d7d1d9ead609f3bcc837f8df 184 Pfam PF09025 YopR, type III needle-polymerisation regulator 44 183 1.2E-33 T 14-10-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 RY45_13875 bfcab9c2d7d1d9ead609f3bcc837f8df 184 SUPERFAMILY SSF140591 59 164 1.18E-41 T 14-10-2018 RY45_13875 bfcab9c2d7d1d9ead609f3bcc837f8df 184 Gene3D G3DSA:1.10.10.1000 55 168 1.3E-34 T 14-10-2018 RY45_13875 bfcab9c2d7d1d9ead609f3bcc837f8df 184 TIGRFAM TIGR02509 type_III_yopR: type III secretion effector, YopR family 52 182 2.0E-45 T 14-10-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 Gene3D G3DSA:3.40.50.720 2 252 8.1E-67 T 14-10-2018 RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 2.8E-8 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.8E-8 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 2.8E-8 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 Pfam PF00106 short chain dehydrogenase 6 205 3.5E-49 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 194 9.8E-5 T 14-10-2018 RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.8E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.8E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 1.8E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.8E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.8E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.8E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12455 2efef6c532b4b8890e812cdd40fe22b6 253 SUPERFAMILY SSF51735 1 251 3.18E-63 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_03655 d3f1de26eec7545dd79d520ebfb9c937 377 Pfam PF02595 Glycerate kinase family 3 373 6.0E-147 T 14-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RY45_03655 d3f1de26eec7545dd79d520ebfb9c937 377 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 3.9E-159 T 14-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RY45_03655 d3f1de26eec7545dd79d520ebfb9c937 377 Gene3D G3DSA:3.40.50.10350 2 360 8.5E-139 T 14-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold RY45_03655 d3f1de26eec7545dd79d520ebfb9c937 377 Gene3D G3DSA:3.90.1510.10 42 276 8.5E-139 T 14-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 RY45_03655 d3f1de26eec7545dd79d520ebfb9c937 377 SUPERFAMILY SSF110738 1 375 8.24E-141 T 14-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 RY45_03655 d3f1de26eec7545dd79d520ebfb9c937 377 PIRSF PIRSF006078 1 376 8.4E-135 T 14-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 Gene3D G3DSA:3.90.1170.50 32 133 8.4E-101 T 14-10-2018 RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 Gene3D G3DSA:3.30.365.10 369 750 9.1E-112 T 14-10-2018 RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 SUPERFAMILY SSF54665 2 151 1.44E-38 T 14-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 151 696 4.5E-155 T 14-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 Gene3D G3DSA:3.30.365.10 451 610 9.1E-112 T 14-10-2018 RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 SUPERFAMILY SSF56003 125 753 3.14E-173 T 14-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 SMART SM01008 17 133 4.0E-40 T 14-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 Gene3D G3DSA:3.30.365.10 15 282 8.4E-101 T 14-10-2018 RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 17 133 2.5E-28 T 14-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RY45_11955 12e0131f385a3df9bbde17bbd236b190 772 Gene3D G3DSA:3.30.365.10 134 358 8.4E-101 T 14-10-2018 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 253 2.0E-70 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 ProSitePatterns PS00221 MIP family signature. 68 76 - T 14-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 Gene3D G3DSA:1.20.1080.10 4 259 6.2E-99 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 SUPERFAMILY SSF81338 9 257 1.7E-76 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 Pfam PF00230 Major intrinsic protein 8 253 1.8E-64 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 PRINTS PR00783 Major intrinsic protein family signature 11 30 1.3E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 PRINTS PR00783 Major intrinsic protein family signature 50 74 1.3E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 PRINTS PR00783 Major intrinsic protein family signature 153 171 1.3E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 PRINTS PR00783 Major intrinsic protein family signature 186 208 1.3E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 PRINTS PR00783 Major intrinsic protein family signature 87 106 1.3E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_09030 ac17fee8ca13afd30a1bbfb1f0f71877 282 PRINTS PR00783 Major intrinsic protein family signature 236 256 1.3E-53 T 14-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 Pfam PF00005 ABC transporter 25 159 2.4E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 SUPERFAMILY SSF50331 237 355 4.37E-12 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 Pfam PF03459 TOBE domain 309 354 3.3E-10 T 14-10-2018 IPR005116 Transport-associated OB, type 1 RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 Gene3D G3DSA:2.40.50.100 292 355 3.2E-9 T 14-10-2018 RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 12 354 1.5E-91 T 14-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 SUPERFAMILY SSF52540 16 223 3.42E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 Gene3D G3DSA:3.40.50.300 14 231 4.4E-56 T 14-10-2018 RY45_14640 ac437caa6ac05a42c78f32e0594ce448 358 SMART SM00382 31 208 6.6E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_16560 8e5faaaad9901629af878f69cc96eba5 118 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 2 109 3.0E-28 T 14-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 RY45_16560 8e5faaaad9901629af878f69cc96eba5 118 PIRSF PIRSF000179 1 116 1.4E-45 T 14-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 RY45_16560 8e5faaaad9901629af878f69cc96eba5 118 Gene3D G3DSA:1.20.1300.10 1 115 4.3E-44 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16560 8e5faaaad9901629af878f69cc96eba5 118 Pfam PF02313 Fumarate reductase subunit D 1 112 3.3E-47 T 14-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 RY45_16560 8e5faaaad9901629af878f69cc96eba5 118 SUPERFAMILY SSF81343 2 113 1.64E-40 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_17030 f0890d989d86a24611584e6daca7b194 144 Gene3D G3DSA:3.30.300.20 1 108 8.2E-41 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_17030 f0890d989d86a24611584e6daca7b194 144 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 115 9.1E-41 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RY45_17030 f0890d989d86a24611584e6daca7b194 144 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 10 100 8.0E-34 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RY45_17030 f0890d989d86a24611584e6daca7b194 144 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 14-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 RY45_17030 f0890d989d86a24611584e6daca7b194 144 SUPERFAMILY SSF89919 2 107 1.83E-34 T 14-10-2018 IPR023799 Ribosome-binding factor A domain superfamily RY45_17030 f0890d989d86a24611584e6daca7b194 144 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 113 27.278 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RY45_17030 f0890d989d86a24611584e6daca7b194 144 Pfam PF02033 Ribosome-binding factor A 7 112 1.7E-32 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 Pfam PF07687 Peptidase dimerisation domain 175 282 8.0E-23 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 108 145 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 Gene3D G3DSA:3.40.630.10 23 363 2.6E-83 T 14-10-2018 RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 SUPERFAMILY SSF53187 5 380 1.37E-61 T 14-10-2018 RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 9 376 1.6E-132 T 14-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 Gene3D G3DSA:3.30.70.360 179 294 2.6E-83 T 14-10-2018 RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 SUPERFAMILY SSF55031 179 284 4.19E-19 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 Pfam PF01546 Peptidase family M20/M25/M40 74 377 7.0E-34 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 RY45_03400 a2bea8efb2218bb0c86e6ea525830cd1 381 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 381 59.847 T 14-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Hamap MF_00203 UvrABC system protein C [uvrC]. 7 612 28.912 T 14-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Gene3D G3DSA:3.40.1440.10 9 105 6.4E-32 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 SUPERFAMILY SSF82771 20 103 9.42E-24 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Gene3D G3DSA:1.10.150.20 560 615 1.2E-24 T 14-10-2018 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Pfam PF01541 GIY-YIG catalytic domain 21 96 1.5E-12 T 14-10-2018 IPR000305 GIY-YIG endonuclease RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Pfam PF02151 UvrB/uvrC motif 208 241 4.3E-8 T 14-10-2018 IPR001943 UVR domain GO:0005515 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Gene3D G3DSA:4.10.860.10 203 244 1.4E-5 T 14-10-2018 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 389 547 5.7E-45 T 14-10-2018 IPR001162 UvrC family homology region RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 SUPERFAMILY SSF47781 526 614 6.04E-24 T 14-10-2018 IPR010994 RuvA domain 2-like RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 SMART SM00278 593 612 0.12 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 SMART SM00278 561 580 0.084 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Pfam PF14520 Helix-hairpin-helix domain 562 613 5.1E-10 T 14-10-2018 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 SMART SM00465 20 101 1.5E-21 T 14-10-2018 IPR000305 GIY-YIG endonuclease RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 Gene3D G3DSA:3.30.420.340 382 557 2.1E-46 T 14-10-2018 IPR038476 UvrC homology region 2 superfamily RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 13 594 1.4E-207 T 14-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 RY45_14565 e1fdd9b11a6f4181fb00f90b4671660b 616 SUPERFAMILY SSF46600 193 246 1.83E-13 T 14-10-2018 IPR036876 UVR domain superfamily RY45_04515 896d5e3e28b54924ae5808bff58a23aa 245 SUPERFAMILY SSF63892 4 242 1.05E-100 T 14-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 RY45_04515 896d5e3e28b54924ae5808bff58a23aa 245 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 3.4E-103 T 14-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 RY45_04515 896d5e3e28b54924ae5808bff58a23aa 245 Gene3D G3DSA:3.20.20.70 1 243 6.0E-107 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_04515 896d5e3e28b54924ae5808bff58a23aa 245 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 132.583 T 14-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 RY45_04515 896d5e3e28b54924ae5808bff58a23aa 245 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 1.8E-101 T 14-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 RY45_08940 4bc3f411c102163da5105899b7802c35 282 SUPERFAMILY SSF53850 89 277 5.31E-31 T 14-10-2018 RY45_08940 4bc3f411c102163da5105899b7802c35 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 3.9E-22 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_08940 4bc3f411c102163da5105899b7802c35 282 Gene3D G3DSA:1.10.10.10 1 90 4.6E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_08940 4bc3f411c102163da5105899b7802c35 282 Gene3D G3DSA:3.40.190.10 92 253 3.5E-49 T 14-10-2018 RY45_08940 4bc3f411c102163da5105899b7802c35 282 SUPERFAMILY SSF46785 2 107 1.18E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08940 4bc3f411c102163da5105899b7802c35 282 Gene3D G3DSA:3.40.190.10 158 248 3.5E-49 T 14-10-2018 RY45_08940 4bc3f411c102163da5105899b7802c35 282 Pfam PF03466 LysR substrate binding domain 87 275 6.2E-32 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_08940 4bc3f411c102163da5105899b7802c35 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 9.1E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_08940 4bc3f411c102163da5105899b7802c35 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 9.1E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_08940 4bc3f411c102163da5105899b7802c35 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 9.1E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04625 628e0288e97f27c8a1998cf972d8ab68 352 Gene3D G3DSA:3.30.2340.10 165 297 4.0E-119 T 14-10-2018 RY45_04625 628e0288e97f27c8a1998cf972d8ab68 352 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 3 337 27.938 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_04625 628e0288e97f27c8a1998cf972d8ab68 352 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 5 165 1.7E-40 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_04625 628e0288e97f27c8a1998cf972d8ab68 352 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 185 332 1.4E-19 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_04625 628e0288e97f27c8a1998cf972d8ab68 352 SUPERFAMILY SSF55120 3 334 2.3E-96 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_04625 628e0288e97f27c8a1998cf972d8ab68 352 Gene3D G3DSA:3.30.2350.20 15 332 4.0E-119 T 14-10-2018 RY45_04625 628e0288e97f27c8a1998cf972d8ab68 352 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 75 88 - T 14-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 RY45_04625 628e0288e97f27c8a1998cf972d8ab68 352 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 3 233 3.9E-56 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_21395 837ff9763150096539480138dc3ad9db 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 1.7E-62 T 14-10-2018 IPR016040 NAD(P)-binding domain RY45_21395 837ff9763150096539480138dc3ad9db 337 Gene3D G3DSA:3.40.50.720 3 273 4.6E-144 T 14-10-2018 RY45_21395 837ff9763150096539480138dc3ad9db 337 Gene3D G3DSA:3.90.25.10 193 328 4.6E-144 T 14-10-2018 RY45_21395 837ff9763150096539480138dc3ad9db 337 SUPERFAMILY SSF51735 1 335 9.86E-97 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21395 837ff9763150096539480138dc3ad9db 337 PRINTS PR01713 Nucleotide sugar epimerase signature 255 270 7.7E-6 T 14-10-2018 RY45_21395 837ff9763150096539480138dc3ad9db 337 PRINTS PR01713 Nucleotide sugar epimerase signature 294 311 7.7E-6 T 14-10-2018 RY45_21395 837ff9763150096539480138dc3ad9db 337 PRINTS PR01713 Nucleotide sugar epimerase signature 230 245 7.7E-6 T 14-10-2018 RY45_21395 837ff9763150096539480138dc3ad9db 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 334 8.6E-141 T 14-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 RY45_19605 4b21dfc2fcd071c66a50782297710f2e 338 SUPERFAMILY SSF52266 27 330 6.96E-23 T 14-10-2018 RY45_19605 4b21dfc2fcd071c66a50782297710f2e 338 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 28 324 8.3E-27 T 14-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 RY45_19605 4b21dfc2fcd071c66a50782297710f2e 338 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 28 39 - T 14-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 RY45_19605 4b21dfc2fcd071c66a50782297710f2e 338 Gene3D G3DSA:3.40.50.1110 15 294 1.1E-42 T 14-10-2018 IPR036514 SGNH hydrolase superfamily RY45_15275 252dcbd880cd93c5f70b5caa6fb45923 268 SUPERFAMILY SSF56219 1 267 3.53E-80 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_15275 252dcbd880cd93c5f70b5caa6fb45923 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 14-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RY45_15275 252dcbd880cd93c5f70b5caa6fb45923 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 267 5.0E-98 T 14-10-2018 RY45_15275 252dcbd880cd93c5f70b5caa6fb45923 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 260 7.0E-20 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RY45_15275 252dcbd880cd93c5f70b5caa6fb45923 268 Gene3D G3DSA:3.60.10.10 1 267 4.6E-76 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_15275 252dcbd880cd93c5f70b5caa6fb45923 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 267 1.8E-86 T 14-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 137 149 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 131 6.6E-33 T 14-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 135 224 1.9E-19 T 14-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 Gene3D G3DSA:1.20.140.10 239 391 6.6E-37 T 14-10-2018 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 SUPERFAMILY SSF47203 241 387 2.74E-40 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 Gene3D G3DSA:2.40.110.10 134 236 1.8E-35 T 14-10-2018 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 240 383 2.1E-25 T 14-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 343 362 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 Gene3D G3DSA:1.10.540.10 1 133 3.4E-42 T 14-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RY45_06665 9ad610583e55811ca43babfe3b820d04 391 SUPERFAMILY SSF56645 6 237 3.66E-75 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RY45_16890 4d27928f2d485888944d214bbb5a7723 299 Pfam PF00589 Phage integrase family 115 285 1.9E-54 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_16890 4d27928f2d485888944d214bbb5a7723 299 Gene3D G3DSA:1.10.150.130 7 100 4.8E-23 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal RY45_16890 4d27928f2d485888944d214bbb5a7723 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 92 1.7E-23 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RY45_16890 4d27928f2d485888944d214bbb5a7723 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 12 299 2.1E-120 T 14-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RY45_16890 4d27928f2d485888944d214bbb5a7723 299 SUPERFAMILY SSF47823 6 102 5.69E-37 T 14-10-2018 RY45_16890 4d27928f2d485888944d214bbb5a7723 299 Gene3D G3DSA:1.10.443.10 113 292 1.2E-72 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_16890 4d27928f2d485888944d214bbb5a7723 299 SUPERFAMILY SSF56349 108 297 8.54E-58 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_16890 4d27928f2d485888944d214bbb5a7723 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 8 299 58.556 T 14-10-2018 IPR023009 Tyrosine recombinase XerC/XerD RY45_16890 4d27928f2d485888944d214bbb5a7723 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 6 299 64.755 T 14-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RY45_19220 6eef31153973685e355f18a09f2f8407 415 SUPERFAMILY SSF55021 247 325 7.82E-17 T 14-10-2018 RY45_19220 6eef31153973685e355f18a09f2f8407 415 Pfam PF13840 ACT domain 339 398 2.8E-14 T 14-10-2018 IPR027795 CASTOR, ACT domain RY45_19220 6eef31153973685e355f18a09f2f8407 415 SUPERFAMILY SSF55021 332 404 2.39E-23 T 14-10-2018 RY45_19220 6eef31153973685e355f18a09f2f8407 415 Pfam PF01842 ACT domain 266 322 2.5E-10 T 14-10-2018 IPR002912 ACT domain RY45_19220 6eef31153973685e355f18a09f2f8407 415 PIRSF PIRSF000726 1 62 4.1E-21 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_19220 6eef31153973685e355f18a09f2f8407 415 PIRSF PIRSF000726 60 409 6.3E-136 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_19220 6eef31153973685e355f18a09f2f8407 415 Gene3D G3DSA:3.30.2130.10 249 412 2.9E-57 T 14-10-2018 RY45_19220 6eef31153973685e355f18a09f2f8407 415 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 401 3.7E-116 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_19220 6eef31153973685e355f18a09f2f8407 415 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_19220 6eef31153973685e355f18a09f2f8407 415 Pfam PF00696 Amino acid kinase family 4 229 9.6E-51 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_19220 6eef31153973685e355f18a09f2f8407 415 SUPERFAMILY SSF53633 4 241 2.09E-74 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_19220 6eef31153973685e355f18a09f2f8407 415 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 401 3.3E-126 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_19220 6eef31153973685e355f18a09f2f8407 415 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 6.1E-5 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RY45_19220 6eef31153973685e355f18a09f2f8407 415 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 6.1E-5 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RY45_19220 6eef31153973685e355f18a09f2f8407 415 Gene3D G3DSA:3.40.1160.10 1 248 3.2E-88 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 SUPERFAMILY SSF81296 1 110 4.01E-14 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 Pfam PF16657 Maltogenic Amylase, C-terminal domain 527 604 8.7E-7 T 14-10-2018 IPR032091 Maltogenic Amylase, C-terminal RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 SUPERFAMILY SSF51445 115 527 8.45E-106 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 Gene3D G3DSA:3.20.20.80 115 520 2.7E-143 T 14-10-2018 RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 Pfam PF00128 Alpha amylase, catalytic domain 178 490 2.5E-76 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 Gene3D G3DSA:2.60.40.1180 522 607 2.1E-19 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 PIRSF PIRSF036918 1 609 1.4E-243 T 14-10-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 SUPERFAMILY SSF51011 532 606 9.0E-15 T 14-10-2018 RY45_21625 ff6b47ea439e207b9772c2593421a74c 609 SMART SM00642 127 518 2.9E-97 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 PIRSF PIRSF000497 1 382 7.2E-175 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 Gene3D G3DSA:3.30.300.10 10 270 3.2E-179 T 14-10-2018 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 14-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 4 380 6.3E-195 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 1 381 58.735 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 3.6E-70 T 14-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 SUPERFAMILY SSF55973 233 382 1.14E-71 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 SUPERFAMILY SSF55973 3 108 9.42E-49 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 Gene3D G3DSA:3.30.300.10 4 233 3.2E-179 T 14-10-2018 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 SUPERFAMILY SSF55973 110 232 9.81E-49 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 Pfam PF02772 S-adenosylmethionine synthetase, central domain 113 231 8.2E-43 T 14-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 Gene3D G3DSA:3.30.300.10 101 373 3.2E-179 T 14-10-2018 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 3 100 1.7E-44 T 14-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_16110 6ba1bb58f3913bba3b799f79406c307a 383 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 115 125 - T 14-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RY45_08460 67161418bd4407704e5ae7e57678d305 112 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 96 3.4E-24 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RY45_08460 67161418bd4407704e5ae7e57678d305 112 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 2.0E-20 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RY45_08460 67161418bd4407704e5ae7e57678d305 112 Gene3D G3DSA:3.30.160.100 1 105 3.5E-32 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like RY45_08460 67161418bd4407704e5ae7e57678d305 112 SUPERFAMILY SSF69754 2 106 3.66E-28 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.305 T 14-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:2.40.50.100 714 788 4.2E-32 T 14-10-2018 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 14-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 14-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:2.40.270.10 1035 1242 1.9E-87 T 14-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 4.9E-55 T 14-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 1.7E-23 T 14-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 6.8E-30 T 14-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 3.6E-155 T 14-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:2.40.50.150 833 956 1.0E-43 T 14-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:3.90.1110.10 301 439 6.8E-36 T 14-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 152 222 1.1E-5 T 14-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 340 454 1.7E-16 T 14-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 3.6E-27 T 14-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:2.40.270.10 790 832 4.7E-7 T 14-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:3.90.1100.10 440 626 2.7E-70 T 14-10-2018 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:3.90.1800.10 1252 1305 8.2E-11 T 14-10-2018 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 SUPERFAMILY SSF64484 11 1340 0.0 T 14-10-2018 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:3.90.1100.10 645 713 3.6E-21 T 14-10-2018 RY45_21045 1682c9065980d87f5e5054eb97c54a88 1342 Gene3D G3DSA:3.90.1100.10 18 174 1.8E-58 T 14-10-2018 RY45_03270 21dee54c9592a947abf5f040e83c098b 294 SUPERFAMILY SSF64397 5 233 3.79E-74 T 14-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RY45_03270 21dee54c9592a947abf5f040e83c098b 294 SUPERFAMILY SSF118352 226 283 5.36E-17 T 14-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RY45_03270 21dee54c9592a947abf5f040e83c098b 294 Pfam PF01430 Hsp33 protein 5 274 8.3E-83 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RY45_03270 21dee54c9592a947abf5f040e83c098b 294 Gene3D G3DSA:1.10.287.480 178 226 2.7E-23 T 14-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily RY45_03270 21dee54c9592a947abf5f040e83c098b 294 PIRSF PIRSF005261 1 285 3.7E-70 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RY45_03270 21dee54c9592a947abf5f040e83c098b 294 Gene3D G3DSA:3.55.30.10 1 176 2.2E-61 T 14-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RY45_03270 21dee54c9592a947abf5f040e83c098b 294 Gene3D G3DSA:3.90.1280.10 227 285 7.2E-19 T 14-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RY45_03270 21dee54c9592a947abf5f040e83c098b 294 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 285 31.204 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 SUPERFAMILY SSF52172 167 291 4.13E-24 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 Pfam PF00072 Response regulator receiver domain 172 286 6.8E-16 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 Pfam PF01584 CheW-like domain 11 146 9.8E-32 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 Gene3D G3DSA:3.40.50.2300 160 294 2.6E-24 T 14-10-2018 RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 SMART SM00260 6 144 4.5E-19 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 PIRSF PIRSF002867 1 295 8.7E-85 T 14-10-2018 IPR024181 Chemotaxis response regulator CheV RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 SMART SM00448 170 287 5.6E-18 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 Gene3D G3DSA:2.30.30.40 18 138 4.2E-27 T 14-10-2018 RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 Gene3D G3DSA:2.40.50.180 28 143 4.2E-27 T 14-10-2018 RY45_05490 3d19cf92143a95ec8fa1303c48bc868e 299 SUPERFAMILY SSF50341 8 148 1.7E-33 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 Pfam PF01037 Lrp/AsnC ligand binding domain 71 143 1.3E-14 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 Gene3D G3DSA:1.10.10.10 1 57 2.3E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 SUPERFAMILY SSF54909 66 148 2.82E-15 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 5.1E-15 T 14-10-2018 RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 Gene3D G3DSA:3.30.70.920 58 141 1.3E-19 T 14-10-2018 RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 SMART SM00344 4 113 8.1E-26 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 4.5E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 4.5E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 4.5E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_02780 999d979f6a61bb2191e0a7b309b93240 156 SUPERFAMILY SSF46785 3 63 2.93E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09740 d5c2bd0968b348cd493e1f48e5a70914 254 Gene3D G3DSA:3.30.1380.10 10 254 6.1E-85 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RY45_09740 d5c2bd0968b348cd493e1f48e5a70914 254 SUPERFAMILY SSF55166 15 252 1.41E-81 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RY45_09740 d5c2bd0968b348cd493e1f48e5a70914 254 PIRSF PIRSF018455 5 253 1.8E-86 T 14-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 RY45_09740 d5c2bd0968b348cd493e1f48e5a70914 254 Pfam PF03411 Penicillin-insensitive murein endopeptidase 24 252 3.3E-85 T 14-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 RY45_08215 cf614054d238084a809617110403f39c 476 Gene3D G3DSA:3.40.309.10 225 426 7.0E-150 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_08215 cf614054d238084a809617110403f39c 476 Pfam PF00171 Aldehyde dehydrogenase family 31 446 9.9E-83 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_08215 cf614054d238084a809617110403f39c 476 Gene3D G3DSA:3.40.605.10 23 446 7.0E-150 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_08215 cf614054d238084a809617110403f39c 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 221 228 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RY45_08215 cf614054d238084a809617110403f39c 476 SUPERFAMILY SSF53720 17 472 9.69E-113 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_08215 cf614054d238084a809617110403f39c 476 PIRSF PIRSF036492 3 476 7.4E-155 T 14-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 RY45_09110 609334777701484491cd83e7ebf9e854 616 PIRSF PIRSF004950 6 615 5.6E-206 T 14-10-2018 IPR012159 Inner membrane protein YejM RY45_09110 609334777701484491cd83e7ebf9e854 616 Gene3D G3DSA:3.40.720.10 252 559 6.0E-44 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_09110 609334777701484491cd83e7ebf9e854 616 SUPERFAMILY SSF53649 259 587 1.74E-46 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_09110 609334777701484491cd83e7ebf9e854 616 Pfam PF00884 Sulfatase 259 531 1.7E-25 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RY45_09110 609334777701484491cd83e7ebf9e854 616 Pfam PF11893 Domain of unknown function (DUF3413) 6 251 2.3E-100 T 14-10-2018 IPR024588 Inner membrane protein YejM, N-terminal RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 Pfam PF01479 S4 domain 342 382 2.9E-5 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 Gene3D G3DSA:3.10.290.10 328 398 8.2E-16 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 Pfam PF00579 tRNA synthetases class I (W and Y) 30 317 2.4E-73 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 398 47.26 T 14-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 2.5E-25 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 2.5E-25 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 2.5E-25 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 2.5E-25 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 SMART SM00363 338 399 0.0016 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 Gene3D G3DSA:1.10.240.10 218 327 2.7E-33 T 14-10-2018 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 Gene3D G3DSA:3.40.50.620 5 217 2.8E-72 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 399 1.3E-120 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 SUPERFAMILY SSF55174 298 398 3.53E-17 T 14-10-2018 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_16075 eb0f291af498df42fe6f25fe3229f199 399 SUPERFAMILY SSF52374 7 317 2.47E-94 T 14-10-2018 RY45_16810 d272456732a13e1f2b773e6f81b90de9 326 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 319 1.3E-146 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RY45_16810 d272456732a13e1f2b773e6f81b90de9 326 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 30 73 4.0E-7 T 14-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RY45_16810 d272456732a13e1f2b773e6f81b90de9 326 Pfam PF04055 Radical SAM superfamily 90 251 3.6E-18 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_16810 d272456732a13e1f2b773e6f81b90de9 326 Gene3D G3DSA:3.20.20.70 51 292 2.6E-26 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_16810 d272456732a13e1f2b773e6f81b90de9 326 SUPERFAMILY SSF102114 52 318 5.23E-70 T 14-10-2018 RY45_16810 d272456732a13e1f2b773e6f81b90de9 326 PIRSF PIRSF005963 6 324 1.8E-130 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RY45_16810 d272456732a13e1f2b773e6f81b90de9 326 Hamap MF_00206 Lipoyl synthase [lipA]. 1 325 155.508 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RY45_16810 d272456732a13e1f2b773e6f81b90de9 326 SMART SM00729 84 293 1.0E-17 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 SUPERFAMILY SSF53623 105 322 1.96E-73 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 Gene3D G3DSA:3.40.50.720 20 107 2.1E-34 T 14-10-2018 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 Pfam PF02875 Mur ligase family, glutamate ligase domain 324 414 8.2E-21 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 469 7.5E-178 T 14-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 SUPERFAMILY SSF53244 323 470 9.89E-48 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 Gene3D G3DSA:3.90.190.20 322 481 1.5E-47 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 Pfam PF01225 Mur ligase family, catalytic domain 21 118 8.0E-30 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 476 43.716 T 14-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 Gene3D G3DSA:3.40.1190.10 108 321 7.1E-80 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 SUPERFAMILY SSF51984 14 106 3.14E-30 T 14-10-2018 RY45_20105 21937b79ef0cf6d6fd1b09fd2839b3cd 484 Pfam PF08245 Mur ligase middle domain 124 304 1.6E-28 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 Gene3D G3DSA:1.10.510.10 195 445 9.4E-19 T 14-10-2018 RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SMART SM00364 35 54 81.0 T 14-10-2018 RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SMART SM00364 58 77 76.0 T 14-10-2018 RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SMART SM00364 103 122 350.0 T 14-10-2018 RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SMART SM00364 126 145 36.0 T 14-10-2018 RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 Pfam PF07714 Protein tyrosine kinase 207 372 2.7E-9 T 14-10-2018 IPR001245 Serine-threonine/tyrosine-protein kinase, catalytic domain GO:0004672|GO:0006468 RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SMART SM00369 104 126 55.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SMART SM00369 34 57 50.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SMART SM00369 127 149 11.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SMART SM00369 58 81 80.0 T 14-10-2018 IPR003591 Leucine-rich repeat, typical subtype RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 Gene3D G3DSA:3.80.10.10 103 194 9.6E-19 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 Gene3D G3DSA:3.80.10.10 11 102 3.3E-15 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 213 238 - T 14-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SUPERFAMILY SSF56112 205 436 3.91E-24 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily RY45_12695 ba619362f09489d834b76d9a1ec1e2b7 449 SUPERFAMILY SSF52058 10 187 9.35E-35 T 14-10-2018 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Gene3D G3DSA:2.70.98.10 740 1025 2.0E-78 T 14-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 PRINTS PR00132 Glycosyl hydrolase family 2 signature 532 547 1.7E-34 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 PRINTS PR00132 Glycosyl hydrolase family 2 signature 448 463 1.7E-34 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 PRINTS PR00132 Glycosyl hydrolase family 2 signature 376 394 1.7E-34 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 PRINTS PR00132 Glycosyl hydrolase family 2 signature 149 164 1.7E-34 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 PRINTS PR00132 Glycosyl hydrolase family 2 signature 345 359 1.7E-34 T 14-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 SUPERFAMILY SSF51445 336 625 1.68E-99 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Pfam PF02929 Beta galactosidase small chain 755 1020 1.3E-56 T 14-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 SUPERFAMILY SSF49303 224 334 1.32E-21 T 14-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 49 221 1.0E-58 T 14-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 SUPERFAMILY SSF49303 622 731 6.71E-27 T 14-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 386 411 - T 14-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Pfam PF16353 Domain of unknown function(DUF4981) 640 727 5.8E-16 T 14-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Hamap MF_01687 Beta-galactosidase [lacZ]. 1 1025 16.895 T 14-10-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 SMART SM01038 750 1025 7.1E-114 T 14-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Gene3D G3DSA:2.60.40.10 223 334 1.2E-23 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 SUPERFAMILY SSF49785 9 221 8.22E-61 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Pfam PF00703 Glycosyl hydrolases family 2 224 334 2.8E-12 T 14-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 336 627 4.2E-104 T 14-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Gene3D G3DSA:3.20.20.80 335 625 3.8E-122 T 14-10-2018 RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Gene3D G3DSA:2.60.40.10 633 735 2.0E-21 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 Gene3D G3DSA:2.60.120.260 2 221 5.3E-71 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily RY45_21385 9f15bcc7e132a9fcfecde10774dd2c0e 1025 SUPERFAMILY SSF74650 739 1024 5.18E-82 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RY45_21455 a875c603db8fc8435920ffddba113d3e 442 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 442 6.6E-226 T 14-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RY45_21455 a875c603db8fc8435920ffddba113d3e 442 SMART SM00382 49 331 4.4E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_21455 a875c603db8fc8435920ffddba113d3e 442 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 137 1.1E-7 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_21455 a875c603db8fc8435920ffddba113d3e 442 SUPERFAMILY SSF52540 3 440 2.39E-93 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21455 a875c603db8fc8435920ffddba113d3e 442 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 442 43.414 T 14-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RY45_21455 a875c603db8fc8435920ffddba113d3e 442 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 334 404 2.6E-6 T 14-10-2018 IPR019489 Clp ATPase, C-terminal RY45_21455 a875c603db8fc8435920ffddba113d3e 442 Gene3D G3DSA:1.10.8.60 334 439 1.3E-41 T 14-10-2018 RY45_21455 a875c603db8fc8435920ffddba113d3e 442 SMART SM01086 334 433 1.9E-24 T 14-10-2018 IPR019489 Clp ATPase, C-terminal RY45_21455 a875c603db8fc8435920ffddba113d3e 442 Pfam PF07724 AAA domain (Cdc48 subfamily) 187 328 1.1E-40 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_19385 2e701dee776152c40635aa21659a21ad 94 Gene3D G3DSA:1.10.287.110 1 89 4.4E-24 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_19385 2e701dee776152c40635aa21659a21ad 94 SUPERFAMILY SSF46565 2 71 1.31E-23 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_19385 2e701dee776152c40635aa21659a21ad 94 Pfam PF00226 DnaJ domain 3 69 1.2E-20 T 14-10-2018 IPR001623 DnaJ domain RY45_19385 2e701dee776152c40635aa21659a21ad 94 SMART SM00271 2 65 9.7E-24 T 14-10-2018 IPR001623 DnaJ domain RY45_19385 2e701dee776152c40635aa21659a21ad 94 PRINTS PR00625 DnaJ domain signature 23 38 1.5E-16 T 14-10-2018 IPR001623 DnaJ domain RY45_19385 2e701dee776152c40635aa21659a21ad 94 PRINTS PR00625 DnaJ domain signature 45 65 1.5E-16 T 14-10-2018 IPR001623 DnaJ domain RY45_19385 2e701dee776152c40635aa21659a21ad 94 PRINTS PR00625 DnaJ domain signature 5 23 1.5E-16 T 14-10-2018 IPR001623 DnaJ domain RY45_08135 586ded73a4a2c9d2d124c39a6111fd95 290 Pfam PF01435 Peptidase family M48 78 289 1.3E-39 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RY45_08135 586ded73a4a2c9d2d124c39a6111fd95 290 Hamap MF_00188 Protease HtpX [htpX]. 1 290 25.319 T 14-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 RY45_08135 586ded73a4a2c9d2d124c39a6111fd95 290 Gene3D G3DSA:3.30.2010.10 68 161 8.1E-36 T 14-10-2018 RY45_22195 2e754c4226b84d0f03decbeae080e545 552 Pfam PF00005 ABC transporter 343 473 2.9E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_22195 2e754c4226b84d0f03decbeae080e545 552 Gene3D G3DSA:3.40.50.300 320 546 1.5E-39 T 14-10-2018 RY45_22195 2e754c4226b84d0f03decbeae080e545 552 ProSitePatterns PS00211 ABC transporters family signature. 446 460 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_22195 2e754c4226b84d0f03decbeae080e545 552 Gene3D G3DSA:1.20.1560.10 1 310 1.2E-22 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_22195 2e754c4226b84d0f03decbeae080e545 552 SUPERFAMILY SSF52540 321 525 7.9E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22195 2e754c4226b84d0f03decbeae080e545 552 SUPERFAMILY SSF90123 5 299 9.94E-28 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_22195 2e754c4226b84d0f03decbeae080e545 552 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 2 523 2.6E-110 T 14-10-2018 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015833|GO:0016021|GO:1904680 RY45_22195 2e754c4226b84d0f03decbeae080e545 552 SMART SM00382 349 522 1.7E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17440 18cc6412d031258502a4d8beff562bd9 153 PIRSF PIRSF020565 1 153 4.3E-49 T 14-10-2018 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted RY45_17440 18cc6412d031258502a4d8beff562bd9 153 Gene3D G3DSA:3.10.129.10 4 142 1.3E-24 T 14-10-2018 RY45_17440 18cc6412d031258502a4d8beff562bd9 153 SUPERFAMILY SSF54637 7 146 4.97E-29 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 SUPERFAMILY SSF46785 3 77 2.81E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 Gene3D G3DSA:1.10.10.10 1 74 4.2E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 145 2.8E-24 T 14-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 1.6E-24 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 1.6E-24 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 1.6E-24 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 1.6E-24 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 73 6.8E-22 T 14-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 SUPERFAMILY SSF55252 82 145 1.57E-20 T 14-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 9 150 3.2E-45 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 1.0E-21 T 14-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 Gene3D G3DSA:3.30.1360.40 75 155 2.6E-32 T 14-10-2018 RY45_03715 5ae44d63a1ae250f0b39cca9346b0225 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 60.79 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_18940 3a26ae305bd58d587903664d2806b72e 224 Pfam PF00717 Peptidase S24-like 135 184 7.8E-13 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RY45_18940 3a26ae305bd58d587903664d2806b72e 224 SMART SM00530 7 62 9.8E-15 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_18940 3a26ae305bd58d587903664d2806b72e 224 Pfam PF01381 Helix-turn-helix 8 62 1.7E-14 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_18940 3a26ae305bd58d587903664d2806b72e 224 SUPERFAMILY SSF51306 90 217 1.7E-21 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RY45_18940 3a26ae305bd58d587903664d2806b72e 224 SUPERFAMILY SSF47413 2 68 9.55E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_18940 3a26ae305bd58d587903664d2806b72e 224 Gene3D G3DSA:1.10.260.40 1 66 1.7E-22 T 14-10-2018 RY45_18940 3a26ae305bd58d587903664d2806b72e 224 Gene3D G3DSA:2.10.109.10 87 223 4.4E-38 T 14-10-2018 RY45_21865 3a76ae7c1104eb054156702a6bfc9ec2 211 Gene3D G3DSA:3.40.50.850 3 204 3.3E-36 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_21865 3a76ae7c1104eb054156702a6bfc9ec2 211 SUPERFAMILY SSF52499 3 199 5.36E-32 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_21865 3a76ae7c1104eb054156702a6bfc9ec2 211 Pfam PF00857 Isochorismatase family 5 199 2.2E-23 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 RY45_01005 4f5dd0745dbadcb7e6d13ce745300c44 205 SUPERFAMILY SSF54980 141 204 5.47E-14 T 14-10-2018 IPR035647 EF-G domain III/V-like RY45_01005 4f5dd0745dbadcb7e6d13ce745300c44 205 SUPERFAMILY SSF54211 5 131 4.55E-41 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_01005 4f5dd0745dbadcb7e6d13ce745300c44 205 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 81 110 - T 14-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site RY45_01005 4f5dd0745dbadcb7e6d13ce745300c44 205 Pfam PF01205 Uncharacterized protein family UPF0029 19 123 3.7E-25 T 14-10-2018 IPR001498 Impact, N-terminal RY45_01005 4f5dd0745dbadcb7e6d13ce745300c44 205 Gene3D G3DSA:3.30.230.30 1 135 1.7E-50 T 14-10-2018 IPR036956 Impact, N-terminal domain superfamily RY45_01005 4f5dd0745dbadcb7e6d13ce745300c44 205 Pfam PF09186 Domain of unknown function (DUF1949) 142 197 2.8E-16 T 14-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal RY45_01005 4f5dd0745dbadcb7e6d13ce745300c44 205 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 201 6.7E-69 T 14-10-2018 IPR015796 Impact family, bacterial/archaeal RY45_01005 4f5dd0745dbadcb7e6d13ce745300c44 205 Gene3D G3DSA:3.30.70.240 136 205 2.7E-10 T 14-10-2018 RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 Gene3D G3DSA:3.40.50.1450 1 156 1.1E-46 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 147 5.6E-47 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 4 152 1.1E-46 T 14-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 Pfam PF01750 Hydrogenase maturation protease 20 146 7.4E-33 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 SUPERFAMILY SSF53163 1 157 3.4E-45 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 PRINTS PR00446 Hydrogen uptake protein signature 3 15 2.6E-22 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 PRINTS PR00446 Hydrogen uptake protein signature 35 52 2.6E-22 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 PRINTS PR00446 Hydrogen uptake protein signature 67 83 2.6E-22 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 PRINTS PR00446 Hydrogen uptake protein signature 15 26 2.6E-22 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_13090 612525fcbbbbf29650f640e3408c0e22 176 PRINTS PR00446 Hydrogen uptake protein signature 56 66 2.6E-22 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RY45_10015 b8ece9053c6817a349633739231c33a3 316 Gene3D G3DSA:3.50.50.60 118 244 5.6E-128 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10015 b8ece9053c6817a349633739231c33a3 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 14-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 7.6E-39 T 14-10-2018 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 7.6E-39 T 14-10-2018 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 7.6E-39 T 14-10-2018 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 7.6E-39 T 14-10-2018 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 7.6E-39 T 14-10-2018 RY45_10015 b8ece9053c6817a349633739231c33a3 316 Gene3D G3DSA:3.50.50.60 10 312 5.6E-128 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10015 b8ece9053c6817a349633739231c33a3 316 SUPERFAMILY SSF51905 2 313 8.67E-53 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 7.6E-77 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 2.4E-49 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_10015 b8ece9053c6817a349633739231c33a3 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 1.3E-123 T 14-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 402 632 1.4E-78 T 14-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 228 257 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 SUPERFAMILY SSF52777 391 632 5.78E-81 T 14-10-2018 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 188 633 1.2E-205 T 14-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 SUPERFAMILY SSF51230 205 297 1.57E-23 T 14-10-2018 IPR011053 Single hybrid motif RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Gene3D G3DSA:4.10.320.10 326 371 1.1E-21 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Pfam PF02817 e3 binding domain 326 361 4.8E-16 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 127 156 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Gene3D G3DSA:3.30.559.10 386 633 2.8E-97 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 SUPERFAMILY SSF51230 105 194 1.1E-20 T 14-10-2018 IPR011053 Single hybrid motif RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 SUPERFAMILY SSF47005 320 365 2.35E-13 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 SUPERFAMILY SSF51230 2 90 9.54E-22 T 14-10-2018 IPR011053 Single hybrid motif RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Gene3D G3DSA:2.40.50.100 1 80 4.0E-20 T 14-10-2018 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Gene3D G3DSA:2.40.50.100 204 282 6.8E-22 T 14-10-2018 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Gene3D G3DSA:2.40.50.100 104 181 7.4E-19 T 14-10-2018 RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Pfam PF00364 Biotin-requiring enzyme 3 73 2.8E-19 T 14-10-2018 IPR000089 Biotin/lipoyl attachment RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Pfam PF00364 Biotin-requiring enzyme 106 175 1.9E-18 T 14-10-2018 IPR000089 Biotin/lipoyl attachment RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 Pfam PF00364 Biotin-requiring enzyme 206 276 7.0E-22 T 14-10-2018 IPR000089 Biotin/lipoyl attachment RY45_20000 49474c59dc258c7866f3d82bb8e9fc6b 633 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RY45_04585 62b98bfb213d075fa1599c9833f99455 440 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 371 401 - T 14-10-2018 IPR030390 RNA methyltransferase TrmA, active site RY45_04585 62b98bfb213d075fa1599c9833f99455 440 Pfam PF01938 TRAM domain 15 64 2.1E-8 T 14-10-2018 IPR002792 TRAM domain RY45_04585 62b98bfb213d075fa1599c9833f99455 440 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 18 440 68.894 T 14-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 RY45_04585 62b98bfb213d075fa1599c9833f99455 440 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 268 440 6.7E-24 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RY45_04585 62b98bfb213d075fa1599c9833f99455 440 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 422 432 - T 14-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site RY45_04585 62b98bfb213d075fa1599c9833f99455 440 Gene3D G3DSA:3.40.50.150 88 434 1.3E-113 T 14-10-2018 RY45_04585 62b98bfb213d075fa1599c9833f99455 440 Gene3D G3DSA:2.40.50.140 1 87 3.9E-30 T 14-10-2018 RY45_04585 62b98bfb213d075fa1599c9833f99455 440 SUPERFAMILY SSF53335 76 439 1.02E-84 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_04585 62b98bfb213d075fa1599c9833f99455 440 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 24 432 4.2E-117 T 14-10-2018 RY45_04585 62b98bfb213d075fa1599c9833f99455 440 Gene3D G3DSA:3.40.1350.30 135 272 1.3E-113 T 14-10-2018 RY45_04585 62b98bfb213d075fa1599c9833f99455 440 SUPERFAMILY SSF50249 3 66 6.85E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_22180 df47e736149086b55c5df2b941fb1372 629 SUPERFAMILY SSF51905 6 261 2.84E-51 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_22180 df47e736149086b55c5df2b941fb1372 629 Gene3D G3DSA:3.50.50.60 296 458 1.9E-54 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_22180 df47e736149086b55c5df2b941fb1372 629 Gene3D G3DSA:3.50.50.60 1 224 2.1E-89 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_22180 df47e736149086b55c5df2b941fb1372 629 Gene3D G3DSA:1.10.150.570 570 622 5.5E-23 T 14-10-2018 RY45_22180 df47e736149086b55c5df2b941fb1372 629 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 358 379 9.8E-7 T 14-10-2018 RY45_22180 df47e736149086b55c5df2b941fb1372 629 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 9.8E-7 T 14-10-2018 RY45_22180 df47e736149086b55c5df2b941fb1372 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 14-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 RY45_22180 df47e736149086b55c5df2b941fb1372 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 14-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 RY45_22180 df47e736149086b55c5df2b941fb1372 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.017 T 14-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 RY45_22180 df47e736149086b55c5df2b941fb1372 629 SMART SM01228 546 617 1.4E-43 T 14-10-2018 RY45_22180 df47e736149086b55c5df2b941fb1372 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 3.6E-278 T 14-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 RY45_22180 df47e736149086b55c5df2b941fb1372 629 Pfam PF13932 GidA associated domain 403 616 2.1E-74 T 14-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 RY45_22180 df47e736149086b55c5df2b941fb1372 629 Gene3D G3DSA:1.10.10.1800 459 550 8.2E-31 T 14-10-2018 RY45_22180 df47e736149086b55c5df2b941fb1372 629 Pfam PF01134 Glucose inhibited division protein A 8 399 2.7E-165 T 14-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 RY45_18565 2de76ee39110878495428eab52e2e77c 725 SMART SM00642 247 624 6.7E-7 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_18565 2de76ee39110878495428eab52e2e77c 725 Gene3D G3DSA:2.60.40.1180 620 725 2.5E-36 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_18565 2de76ee39110878495428eab52e2e77c 725 SUPERFAMILY SSF81296 113 223 8.22E-26 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_18565 2de76ee39110878495428eab52e2e77c 725 PIRSF PIRSF000463 1 725 1.5E-276 T 14-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RY45_18565 2de76ee39110878495428eab52e2e77c 725 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 127 202 2.7E-17 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RY45_18565 2de76ee39110878495428eab52e2e77c 725 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 112 721 1.2E-255 T 14-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RY45_18565 2de76ee39110878495428eab52e2e77c 725 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 96 724 41.985 T 14-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RY45_18565 2de76ee39110878495428eab52e2e77c 725 Gene3D G3DSA:3.20.20.80 221 619 2.6E-161 T 14-10-2018 RY45_18565 2de76ee39110878495428eab52e2e77c 725 SUPERFAMILY SSF81296 10 99 1.15E-11 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_18565 2de76ee39110878495428eab52e2e77c 725 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 625 722 8.3E-21 T 14-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RY45_18565 2de76ee39110878495428eab52e2e77c 725 Pfam PF00128 Alpha amylase, catalytic domain 272 345 6.2E-9 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_18565 2de76ee39110878495428eab52e2e77c 725 Gene3D G3DSA:2.60.40.10 1 218 8.4E-51 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_18565 2de76ee39110878495428eab52e2e77c 725 SUPERFAMILY SSF51011 620 723 1.18E-31 T 14-10-2018 RY45_18565 2de76ee39110878495428eab52e2e77c 725 SUPERFAMILY SSF51445 219 618 2.7E-107 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 Gene3D G3DSA:3.40.50.2300 62 309 8.0E-75 T 14-10-2018 RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 Gene3D G3DSA:1.10.260.40 1 60 1.5E-22 T 14-10-2018 RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 SMART SM00354 1 71 2.0E-31 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.0E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.0E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.2E-19 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 SUPERFAMILY SSF47413 2 60 5.63E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 Pfam PF13377 Periplasmic binding protein-like domain 170 331 3.1E-37 T 14-10-2018 RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 SUPERFAMILY SSF53822 61 332 1.61E-77 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_08475 224b6595f3ab0ccdb795ae59a35d982a 332 Gene3D G3DSA:3.40.50.2300 161 291 8.0E-75 T 14-10-2018 RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 SUPERFAMILY SSF52467 190 362 3.66E-64 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 543 1.3E-50 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 SUPERFAMILY SSF52518 372 565 2.5E-69 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 Gene3D G3DSA:3.40.50.970 366 564 5.7E-67 T 14-10-2018 RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 SUPERFAMILY SSF52518 2 180 6.24E-65 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 4.7E-47 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 Gene3D G3DSA:3.40.50.970 1 178 2.8E-71 T 14-10-2018 RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 167 4.6E-60 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 567 5.3E-267 T 14-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RY45_04935 d460e30e612953e1de277df2bffbbbf1 572 Gene3D G3DSA:3.40.50.1220 190 360 6.3E-63 T 14-10-2018 RY45_02340 acacd0ec40c0f9664a247b850b43cef0 286 Pfam PF01380 SIS domain 132 260 7.2E-21 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_02340 acacd0ec40c0f9664a247b850b43cef0 286 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 74 2.2E-25 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RY45_02340 acacd0ec40c0f9664a247b850b43cef0 286 SUPERFAMILY SSF53697 99 272 1.44E-40 T 14-10-2018 RY45_02340 acacd0ec40c0f9664a247b850b43cef0 286 Gene3D G3DSA:1.10.10.10 1 79 2.2E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_02340 acacd0ec40c0f9664a247b850b43cef0 286 SUPERFAMILY SSF46689 4 77 1.08E-19 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_02340 acacd0ec40c0f9664a247b850b43cef0 286 Gene3D G3DSA:3.40.50.10490 100 282 1.0E-45 T 14-10-2018 RY45_19025 152435e1d8f7cbd3e3ffc1881151f89a 241 Pfam PF05944 Phage small terminase subunit 40 173 3.7E-36 T 14-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 RY45_16270 a2667c4531d76059aadab75b5eab1636 315 Gene3D G3DSA:3.40.50.2020 148 290 1.5E-136 T 14-10-2018 RY45_16270 a2667c4531d76059aadab75b5eab1636 315 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 50.153 T 14-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 RY45_16270 a2667c4531d76059aadab75b5eab1636 315 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 6.7E-50 T 14-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RY45_16270 a2667c4531d76059aadab75b5eab1636 315 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 8.2E-127 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RY45_16270 a2667c4531d76059aadab75b5eab1636 315 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 2.6E-31 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RY45_16270 a2667c4531d76059aadab75b5eab1636 315 Gene3D G3DSA:3.40.50.2020 7 302 1.5E-136 T 14-10-2018 RY45_16270 a2667c4531d76059aadab75b5eab1636 315 SMART SM01400 4 121 1.2E-77 T 14-10-2018 RY45_16270 a2667c4531d76059aadab75b5eab1636 315 SUPERFAMILY SSF53271 69 306 2.91E-67 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like RY45_16270 a2667c4531d76059aadab75b5eab1636 315 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 14-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 RY45_20485 8e701f796ed3595f6657050dba601d21 246 Gene3D G3DSA:3.20.20.70 1 246 5.3E-114 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_20485 8e701f796ed3595f6657050dba601d21 246 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 8 242 1.5E-120 T 14-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RY45_20485 8e701f796ed3595f6657050dba601d21 246 Pfam PF07071 KDGP aldolase 8 224 1.9E-111 T 14-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RY45_20485 8e701f796ed3595f6657050dba601d21 246 SUPERFAMILY SSF51569 80 203 3.17E-7 T 14-10-2018 RY45_12355 45e42fc53cc840472ae0c3b385f61fc9 429 TIGRFAM TIGR00277 HDIG: HDIG domain 249 339 2.9E-7 T 14-10-2018 IPR006675 HDIG domain RY45_12355 45e42fc53cc840472ae0c3b385f61fc9 429 Gene3D G3DSA:1.10.3210.10 230 416 2.3E-52 T 14-10-2018 RY45_12355 45e42fc53cc840472ae0c3b385f61fc9 429 SUPERFAMILY SSF109604 240 411 3.93E-33 T 14-10-2018 RY45_12355 45e42fc53cc840472ae0c3b385f61fc9 429 SUPERFAMILY SSF109604 26 193 1.33E-17 T 14-10-2018 RY45_12355 45e42fc53cc840472ae0c3b385f61fc9 429 Gene3D G3DSA:1.10.3210.10 21 200 1.9E-20 T 14-10-2018 RY45_12355 45e42fc53cc840472ae0c3b385f61fc9 429 Pfam PF01966 HD domain 250 371 3.8E-21 T 14-10-2018 IPR006674 HD domain RY45_12355 45e42fc53cc840472ae0c3b385f61fc9 429 SMART SM00471 245 380 3.7E-14 T 14-10-2018 IPR003607 HD/PDEase domain RY45_12355 45e42fc53cc840472ae0c3b385f61fc9 429 SMART SM00471 34 164 7.8 T 14-10-2018 IPR003607 HD/PDEase domain RY45_01140 538223a59a4b1deb6a222f948277fdb2 371 SUPERFAMILY SSF53756 1 340 2.2E-96 T 14-10-2018 RY45_01140 538223a59a4b1deb6a222f948277fdb2 371 Gene3D G3DSA:3.40.50.2000 163 343 3.4E-54 T 14-10-2018 RY45_01140 538223a59a4b1deb6a222f948277fdb2 371 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 340 1.3E-146 T 14-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 RY45_01140 538223a59a4b1deb6a222f948277fdb2 371 Gene3D G3DSA:3.40.50.2000 1 150 3.7E-55 T 14-10-2018 RY45_01140 538223a59a4b1deb6a222f948277fdb2 371 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 322 2.1E-72 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 RY45_17475 9c7b542de8b2bee7ac2f7b06cac5d53a 567 Pfam PF00535 Glycosyl transferase family 2 4 169 1.0E-18 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RY45_17475 9c7b542de8b2bee7ac2f7b06cac5d53a 567 Gene3D G3DSA:3.90.550.10 4 237 2.4E-24 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_17475 9c7b542de8b2bee7ac2f7b06cac5d53a 567 SUPERFAMILY SSF53448 4 233 3.77E-31 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_17475 9c7b542de8b2bee7ac2f7b06cac5d53a 567 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 356 555 1.6E-6 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 Gene3D G3DSA:3.40.190.290 91 300 2.0E-33 T 14-10-2018 RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 SUPERFAMILY SSF53850 88 296 1.11E-34 T 14-10-2018 RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 Pfam PF03466 LysR substrate binding domain 87 296 5.9E-34 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 SUPERFAMILY SSF46785 1 83 1.36E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 Gene3D G3DSA:1.10.10.10 1 83 1.6E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.8E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07035 29d6f8068e556946c574eb5c1c15935e 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 SUPERFAMILY SSF53649 5 505 5.5E-78 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 84 295 5.4E-80 T 14-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 Gene3D G3DSA:3.40.720.10 7 504 1.2E-212 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 PIRSF PIRSF001492 1 509 8.6E-205 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 506 3.8E-227 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 Gene3D G3DSA:3.40.1450.10 79 308 1.2E-212 T 14-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 SUPERFAMILY SSF64158 79 306 4.97E-84 T 14-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 Pfam PF01676 Metalloenzyme superfamily 6 494 2.9E-78 T 14-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 RY45_01760 313b4de0bb2c632f155dfbe11b7136f4 509 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 507 49.512 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_12020 3ebe8824e119a857068d89ba4eca83f5 474 SUPERFAMILY SSF51338 353 458 5.0E-35 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_12020 3ebe8824e119a857068d89ba4eca83f5 474 Gene3D G3DSA:2.30.40.10 4 456 5.8E-159 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_12020 3ebe8824e119a857068d89ba4eca83f5 474 SUPERFAMILY SSF51556 54 382 1.42E-95 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_12020 3ebe8824e119a857068d89ba4eca83f5 474 SUPERFAMILY SSF51338 1 64 1.98E-13 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_12020 3ebe8824e119a857068d89ba4eca83f5 474 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 454 6.6E-175 T 14-10-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 RY45_12020 3ebe8824e119a857068d89ba4eca83f5 474 Pfam PF01979 Amidohydrolase family 50 436 5.9E-23 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_12020 3ebe8824e119a857068d89ba4eca83f5 474 Gene3D G3DSA:3.20.20.140 54 423 5.8E-159 T 14-10-2018 RY45_13540 77905102ccc4452a41a57ac173029851 331 Gene3D G3DSA:3.40.50.300 6 330 6.5E-96 T 14-10-2018 RY45_13540 77905102ccc4452a41a57ac173029851 331 SUPERFAMILY SSF52540 8 261 1.77E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13540 77905102ccc4452a41a57ac173029851 331 Pfam PF00005 ABC transporter 38 189 4.3E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_13540 77905102ccc4452a41a57ac173029851 331 SMART SM00382 46 239 1.8E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_13540 77905102ccc4452a41a57ac173029851 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 326 3.9E-27 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_13540 77905102ccc4452a41a57ac173029851 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 308 1.5E-19 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_13540 77905102ccc4452a41a57ac173029851 331 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17270 af4b45a816ff8bc7632ade3560cc780e 492 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 436 8.6E-94 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RY45_17270 af4b45a816ff8bc7632ade3560cc780e 492 Gene3D G3DSA:1.20.1730.10 27 491 3.1E-84 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily RY45_17270 af4b45a816ff8bc7632ade3560cc780e 492 Pfam PF00474 Sodium:solute symporter family 36 436 3.9E-110 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RY45_17270 af4b45a816ff8bc7632ade3560cc780e 492 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 473 6.7E-215 T 14-10-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0036376 RY45_14815 c87be331a73ff0aadfbef3abe37eacb0 256 Gene3D G3DSA:2.60.40.4070 103 191 1.1E-35 T 14-10-2018 RY45_14815 c87be331a73ff0aadfbef3abe37eacb0 256 Gene3D G3DSA:2.30.30.910 87 221 1.1E-35 T 14-10-2018 RY45_14815 c87be331a73ff0aadfbef3abe37eacb0 256 Pfam PF13861 FlgD Tudor-like domain 86 223 5.3E-15 T 14-10-2018 IPR025963 FlgD Tudor-like domain RY45_14815 c87be331a73ff0aadfbef3abe37eacb0 256 Pfam PF13860 FlgD Ig-like domain 110 181 1.1E-14 T 14-10-2018 IPR025965 FlgD Ig-like domain RY45_14815 c87be331a73ff0aadfbef3abe37eacb0 256 Pfam PF03963 Flagellar hook capping protein - N-terminal region 14 78 1.6E-19 T 14-10-2018 IPR005648 Flagellar hook capping protein RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 895 17.636 T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 SUPERFAMILY SSF50447 798 895 1.46E-34 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 62 100 1.6E-12 T 14-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 ProSitePatterns PS01176 Initiation factor 2 signature. 848 870 - T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 314 897 2.3E-288 T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 401 554 4.8E-31 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 322 372 2.4E-14 T 14-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Gene3D G3DSA:2.40.30.10 799 896 1.0E-34 T 14-10-2018 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 SUPERFAMILY SSF52540 394 559 2.54E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 SUPERFAMILY SSF50447 570 652 1.13E-23 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Pfam PF00009 Elongation factor Tu GTP binding domain 401 557 8.3E-35 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Gene3D G3DSA:3.40.50.10050 691 798 4.7E-36 T 14-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Gene3D G3DSA:2.40.30.10 569 687 1.1E-39 T 14-10-2018 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 SUPERFAMILY SSF52156 675 804 2.48E-37 T 14-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 SUPERFAMILY SSF46955 3 51 3.48E-12 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Gene3D G3DSA:3.30.56.50 2 51 2.6E-20 T 14-10-2018 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Gene3D G3DSA:3.40.50.300 394 568 1.0E-71 T 14-10-2018 RY45_17035 39b3f8f65884ab916c8dc721e0aa4691 897 Pfam PF11987 Translation-initiation factor 2 682 787 1.1E-35 T 14-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 RY45_02515 245170e583d3072588af2cc17291cf2c 538 Gene3D G3DSA:3.40.1190.20 8 283 1.3E-88 T 14-10-2018 IPR029056 Ribokinase-like RY45_02515 245170e583d3072588af2cc17291cf2c 538 Gene3D G3DSA:3.20.20.70 317 518 2.7E-55 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_02515 245170e583d3072588af2cc17291cf2c 538 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 330 512 8.5E-48 T 14-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RY45_02515 245170e583d3072588af2cc17291cf2c 538 SUPERFAMILY SSF51391 315 514 1.14E-60 T 14-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RY45_02515 245170e583d3072588af2cc17291cf2c 538 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 300 517 19.337 T 14-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RY45_02515 245170e583d3072588af2cc17291cf2c 538 Pfam PF08543 Phosphomethylpyrimidine kinase 30 275 2.5E-72 T 14-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RY45_02515 245170e583d3072588af2cc17291cf2c 538 SUPERFAMILY SSF53613 20 280 1.87E-66 T 14-10-2018 IPR029056 Ribokinase-like RY45_02515 245170e583d3072588af2cc17291cf2c 538 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 24 277 2.0E-73 T 14-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RY45_02515 245170e583d3072588af2cc17291cf2c 538 Pfam PF02581 Thiamine monophosphate synthase 330 499 9.0E-52 T 14-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 Gene3D G3DSA:1.20.58.760 400 605 4.5E-72 T 14-10-2018 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 Pfam PF01434 Peptidase family M41 385 594 1.6E-82 T 14-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 SMART SM00382 187 326 8.6E-27 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 191 323 2.4E-46 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 Gene3D G3DSA:3.40.50.300 144 323 4.0E-71 T 14-10-2018 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 ProSitePatterns PS00674 AAA-protein family signature. 294 312 - T 14-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 Pfam PF06480 FtsH Extracellular 8 92 3.5E-11 T 14-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 611 37.592 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 596 6.9E-245 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 Gene3D G3DSA:2.40.50.920 26 104 1.8E-23 T 14-10-2018 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 SUPERFAMILY SSF52540 147 394 1.18E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 SUPERFAMILY SSF140990 405 606 4.71E-75 T 14-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RY45_17080 076708c10c2fe4cc02630c91a23bb354 649 Gene3D G3DSA:1.10.8.60 325 399 8.1E-29 T 14-10-2018 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 Gene3D G3DSA:3.10.20.400 5 103 3.1E-34 T 14-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 39 111 1.4E-30 T 14-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 SUPERFAMILY SSF141734 15 119 3.4E-43 T 14-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 123 208 8.4E-17 T 14-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 SUPERFAMILY SSF101386 121 209 7.48E-25 T 14-10-2018 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 Gene3D G3DSA:1.10.287.1080 120 211 7.6E-30 T 14-10-2018 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 122 205 1.1E-31 T 14-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 14 210 37.511 T 14-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 62 111 2.0E-18 T 14-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RY45_11905 8b2f6ee93434afc5c8d5c33a5ef94d25 211 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 119 205 20.001 T 14-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 SUPERFAMILY SSF52540 302 531 5.96E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 Gene3D G3DSA:3.40.50.300 286 555 4.5E-78 T 14-10-2018 RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 SUPERFAMILY SSF52540 11 243 4.44E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 Pfam PF00005 ABC transporter 22 191 5.8E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 Gene3D G3DSA:3.40.50.300 1 285 4.4E-88 T 14-10-2018 RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 Pfam PF00005 ABC transporter 340 473 2.9E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 3.1E-296 T 14-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 SMART SM00382 31 236 2.1E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 SMART SM00382 348 522 1.4E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_05255 8adefa3b5a8a2ef1e5f2db674f8932b1 555 Pfam PF12848 ABC transporter 230 303 1.7E-11 T 14-10-2018 IPR032781 ABC-transporter extension domain RY45_02725 c0659942c0f09b1a6cd719b523889b91 256 Gene3D G3DSA:3.40.50.880 9 254 2.0E-67 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_02725 c0659942c0f09b1a6cd719b523889b91 256 SUPERFAMILY SSF52317 33 252 2.57E-43 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_02725 c0659942c0f09b1a6cd719b523889b91 256 Pfam PF07722 Peptidase C26 11 229 3.2E-68 T 14-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 281 3.2E-73 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 SUPERFAMILY SSF51419 27 283 6.41E-81 T 14-10-2018 IPR029066 PLP-binding barrel RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 58 76 - T 14-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 Gene3D G3DSA:3.20.20.10 35 276 3.1E-149 T 14-10-2018 IPR029066 PLP-binding barrel RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 SUPERFAMILY SSF50621 255 414 2.72E-51 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 31 370 3.1E-23 T 14-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 Gene3D G3DSA:2.40.37.10 18 409 3.1E-149 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 412 3.8E-165 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 76 93 3.3E-31 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 380 402 3.3E-31 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 299 317 3.3E-31 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 165 174 3.3E-31 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 191 204 4.9E-27 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 370 383 4.9E-27 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 58 76 4.9E-27 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 78 90 4.9E-27 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 271 290 4.9E-27 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_02685 7bfa1aa51d8fbb9ac8d70ee8613c6ac2 416 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 16 413 41.922 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_11845 97d9a9a0aab7cd26c12cc2116aa8c977 640 Gene3D G3DSA:3.40.50.300 20 281 1.6E-46 T 14-10-2018 RY45_11845 97d9a9a0aab7cd26c12cc2116aa8c977 640 SUPERFAMILY SSF52540 36 597 2.95E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11845 97d9a9a0aab7cd26c12cc2116aa8c977 640 SMART SM00491 476 605 4.6E-44 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RY45_11845 97d9a9a0aab7cd26c12cc2116aa8c977 640 Pfam PF13307 Helicase C-terminal domain 461 617 8.4E-37 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RY45_11845 97d9a9a0aab7cd26c12cc2116aa8c977 640 Gene3D G3DSA:3.40.50.300 448 637 1.9E-37 T 14-10-2018 RY45_04895 59e81bd48a5560ff2001360a12972e1f 309 Gene3D G3DSA:3.10.620.30 140 244 7.3E-6 T 14-10-2018 RY45_15850 00f25b34c6d6aceb0fac890a598f2685 292 SUPERFAMILY SSF53850 90 277 1.2E-7 T 14-10-2018 RY45_15850 00f25b34c6d6aceb0fac890a598f2685 292 Pfam PF12728 Helix-turn-helix domain 4 51 2.5E-12 T 14-10-2018 RY45_15850 00f25b34c6d6aceb0fac890a598f2685 292 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 4 50 4.8E-9 T 14-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RY45_15850 00f25b34c6d6aceb0fac890a598f2685 292 Pfam PF12727 PBP superfamily domain 88 264 1.2E-38 T 14-10-2018 IPR024370 PBP domain RY45_12120 26a49e4d3ebf5d963dfb083190f9bdcf 407 PIRSF PIRSF003180 1 403 3.2E-148 T 14-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing RY45_12120 26a49e4d3ebf5d963dfb083190f9bdcf 407 SUPERFAMILY SSF109604 181 398 1.54E-41 T 14-10-2018 RY45_12120 26a49e4d3ebf5d963dfb083190f9bdcf 407 Gene3D G3DSA:3.20.20.450 3 196 1.4E-20 T 14-10-2018 IPR035919 EAL domain superfamily RY45_12120 26a49e4d3ebf5d963dfb083190f9bdcf 407 Pfam PF08668 HDOD domain 202 319 2.5E-15 T 14-10-2018 IPR013976 Metal-dependent hydrolase HDOD RY45_12120 26a49e4d3ebf5d963dfb083190f9bdcf 407 SUPERFAMILY SSF141868 4 202 4.97E-31 T 14-10-2018 IPR035919 EAL domain superfamily RY45_12120 26a49e4d3ebf5d963dfb083190f9bdcf 407 Pfam PF00563 EAL domain 41 190 9.9E-18 T 14-10-2018 IPR001633 EAL domain RY45_12120 26a49e4d3ebf5d963dfb083190f9bdcf 407 SMART SM00052 1 195 1.0E-4 T 14-10-2018 IPR001633 EAL domain RY45_12120 26a49e4d3ebf5d963dfb083190f9bdcf 407 Gene3D G3DSA:1.10.3210.10 197 335 1.4E-22 T 14-10-2018 RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 9.4E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 9.4E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.4E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 9.4E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 Gene3D G3DSA:3.40.50.720 1 260 1.4E-55 T 14-10-2018 RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 7.5E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 7.5E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 7.5E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 Pfam PF00106 short chain dehydrogenase 6 191 7.4E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 181 0.0029 T 14-10-2018 RY45_16605 1def15a4da20b8c3edd653708fe6cb36 281 SUPERFAMILY SSF51735 1 259 5.85E-57 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_11275 782d532f3124d91b19558507924249e7 199 Gene3D G3DSA:3.40.630.30 36 196 7.1E-28 T 14-10-2018 RY45_11275 782d532f3124d91b19558507924249e7 199 Pfam PF00583 Acetyltransferase (GNAT) family 85 175 1.3E-5 T 14-10-2018 IPR000182 GNAT domain RY45_11275 782d532f3124d91b19558507924249e7 199 SUPERFAMILY SSF55729 42 175 2.34E-13 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_00765 3fab4c837859af12221105a986131686 108 Gene3D G3DSA:3.40.30.10 1 107 1.4E-36 T 14-10-2018 RY45_00765 3fab4c837859af12221105a986131686 108 SUPERFAMILY SSF52833 2 107 9.53E-40 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_00765 3fab4c837859af12221105a986131686 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RY45_00765 3fab4c837859af12221105a986131686 108 Pfam PF00085 Thioredoxin 5 105 1.7E-34 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 RY45_00765 3fab4c837859af12221105a986131686 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.3E-10 T 14-10-2018 RY45_00765 3fab4c837859af12221105a986131686 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.3E-10 T 14-10-2018 RY45_00765 3fab4c837859af12221105a986131686 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.3E-10 T 14-10-2018 RY45_00765 3fab4c837859af12221105a986131686 108 PIRSF PIRSF000077 2 108 8.2E-44 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RY45_00765 3fab4c837859af12221105a986131686 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 106 5.9E-39 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 Gene3D G3DSA:3.50.80.20 73 172 2.0E-9 T 14-10-2018 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 49 68 1.2E-27 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 412 425 1.2E-27 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 333 347 1.2E-27 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 275 297 1.2E-27 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 348 362 1.2E-27 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 28 441 9.0E-93 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 42 432 1.5E-92 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 SUPERFAMILY SSF56601 22 458 4.85E-82 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_13615 485dea36e955ebaf91bb78e18c2eb8a2 478 Gene3D G3DSA:3.40.710.10 263 469 6.0E-58 T 14-10-2018 RY45_10835 b3d46b7a5a6f9fe9e1924bc40c74405e 163 Gene3D G3DSA:3.40.630.30 2 140 7.5E-34 T 14-10-2018 RY45_10835 b3d46b7a5a6f9fe9e1924bc40c74405e 163 Pfam PF00583 Acetyltransferase (GNAT) family 38 134 2.1E-10 T 14-10-2018 IPR000182 GNAT domain RY45_10835 b3d46b7a5a6f9fe9e1924bc40c74405e 163 SUPERFAMILY SSF55729 2 135 2.23E-25 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_20060 f60fc9308ceddc9ab80fa5ec5bd61229 64 Pfam PF03884 DNA gyrase inhibitor YacG 5 51 1.2E-25 T 14-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RY45_20060 f60fc9308ceddc9ab80fa5ec5bd61229 64 SUPERFAMILY SSF57716 2 54 6.99E-21 T 14-10-2018 RY45_20060 f60fc9308ceddc9ab80fa5ec5bd61229 64 Gene3D G3DSA:3.30.50.10 1 61 1.3E-24 T 14-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 RY45_20060 f60fc9308ceddc9ab80fa5ec5bd61229 64 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 61 18.686 T 14-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RY45_16090 e25c877b0be19f34df8d79b1ebdbd1db 287 PIRSF PIRSF037798 1 287 2.8E-142 T 14-10-2018 IPR017283 Protein/nucleic acid deglycase HchA GO:0036524 RY45_16090 e25c877b0be19f34df8d79b1ebdbd1db 287 Gene3D G3DSA:3.40.50.880 6 285 1.5E-77 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_16090 e25c877b0be19f34df8d79b1ebdbd1db 287 SUPERFAMILY SSF52317 8 281 2.18E-51 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_16090 e25c877b0be19f34df8d79b1ebdbd1db 287 Pfam PF01965 DJ-1/PfpI family 78 266 7.0E-7 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 Pfam PF07840 FadR C-terminal domain 72 234 2.1E-72 T 14-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 SUPERFAMILY SSF48008 79 230 1.31E-58 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 Gene3D G3DSA:1.10.10.10 1 79 6.3E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 235 1.8E-118 T 14-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 SUPERFAMILY SSF46785 11 75 2.81E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.2E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 Gene3D G3DSA:1.20.120.530 80 237 1.4E-42 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 237 161.612 T 14-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 RY45_10665 5c5292be05b10a3585f0d75e3ef9308f 237 SMART SM00345 12 71 1.0E-22 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 69.641 T 14-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 3.4E-256 T 14-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 SUPERFAMILY SSF53901 15 295 1.73E-60 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 14-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 PIRSF PIRSF000429 9 436 1.5E-118 T 14-10-2018 IPR002155 Thiolase GO:0016747 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 Gene3D G3DSA:3.40.47.10 6 435 2.5E-113 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 SUPERFAMILY SSF53901 296 435 3.43E-33 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 2.0E-130 T 14-10-2018 IPR002155 Thiolase GO:0016747 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 14-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 1.3E-36 T 14-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RY45_12065 99aaa5f313f57ecf2e27f1d752c328b6 436 Pfam PF00108 Thiolase, N-terminal domain 15 287 1.9E-60 T 14-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RY45_15120 925da879891ff63adbec32788ca5dbd2 337 Gene3D G3DSA:1.20.970.10 3 66 7.1E-19 T 14-10-2018 RY45_15120 925da879891ff63adbec32788ca5dbd2 337 SUPERFAMILY SSF52418 70 329 3.14E-91 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_15120 925da879891ff63adbec32788ca5dbd2 337 Gene3D G3DSA:3.40.1030.10 70 337 1.6E-101 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_15120 925da879891ff63adbec32788ca5dbd2 337 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 63 8.4E-16 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_15120 925da879891ff63adbec32788ca5dbd2 337 Pfam PF00591 Glycosyl transferase family, a/b domain 73 322 8.5E-100 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_15120 925da879891ff63adbec32788ca5dbd2 337 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 332 37.752 T 14-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 RY45_15120 925da879891ff63adbec32788ca5dbd2 337 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 330 7.8E-125 T 14-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 RY45_15120 925da879891ff63adbec32788ca5dbd2 337 SUPERFAMILY SSF47648 1 65 2.75E-16 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_09505 a70ccdbd197021d9f1a41ec420e0a075 331 Pfam PF01136 Peptidase family U32 76 330 3.8E-68 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RY45_09505 a70ccdbd197021d9f1a41ec420e0a075 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RY45_16215 b7ad530683bf0e4a1fca50f3982e44b6 126 Gene3D G3DSA:3.20.70.20 33 126 1.1E-23 T 14-10-2018 RY45_16215 b7ad530683bf0e4a1fca50f3982e44b6 126 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 126 3.4E-70 T 14-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA RY45_16215 b7ad530683bf0e4a1fca50f3982e44b6 126 SUPERFAMILY SSF51998 66 125 4.58E-22 T 14-10-2018 RY45_16215 b7ad530683bf0e4a1fca50f3982e44b6 126 ProSitePatterns PS00850 Glycine radical domain signature. 96 104 - T 14-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RY45_16215 b7ad530683bf0e4a1fca50f3982e44b6 126 PIRSF PIRSF000378 2 126 1.9E-52 T 14-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA RY45_16215 b7ad530683bf0e4a1fca50f3982e44b6 126 Pfam PF01228 Glycine radical 10 107 2.1E-22 T 14-10-2018 IPR001150 Glycine radical domain GO:0003824 RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 Pfam PF07676 WD40-like Beta Propeller Repeat 248 282 1.3E-8 T 14-10-2018 IPR011659 WD40-like Beta Propeller RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 Pfam PF07676 WD40-like Beta Propeller Repeat 290 325 3.4E-11 T 14-10-2018 IPR011659 WD40-like Beta Propeller RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 Pfam PF07676 WD40-like Beta Propeller Repeat 211 238 1.2E-7 T 14-10-2018 IPR011659 WD40-like Beta Propeller RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 SUPERFAMILY SSF69304 166 438 2.48E-56 T 14-10-2018 RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 SUPERFAMILY SSF52964 28 171 1.19E-42 T 14-10-2018 RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 5 436 49.926 T 14-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 Gene3D G3DSA:3.40.50.10070 19 174 2.9E-49 T 14-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 Pfam PF04052 TolB amino-terminal domain 23 125 4.1E-35 T 14-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 Gene3D G3DSA:2.120.10.30 175 441 2.3E-93 T 14-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RY45_18635 09e0c7d0751410ea3890a0a958b235b0 441 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 437 1.2E-162 T 14-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 RY45_15365 e4cc45928d4c6b101977b68d011d236a 242 Pfam PF02308 MgtC family 19 143 9.2E-34 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_15365 e4cc45928d4c6b101977b68d011d236a 242 PRINTS PR01837 MgtC/SapB protein signature 22 41 4.2E-40 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_15365 e4cc45928d4c6b101977b68d011d236a 242 PRINTS PR01837 MgtC/SapB protein signature 71 93 4.2E-40 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_15365 e4cc45928d4c6b101977b68d011d236a 242 PRINTS PR01837 MgtC/SapB protein signature 41 59 4.2E-40 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_15365 e4cc45928d4c6b101977b68d011d236a 242 PRINTS PR01837 MgtC/SapB protein signature 98 122 4.2E-40 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 SUPERFAMILY SSF56300 32 381 5.0E-76 T 14-10-2018 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 SUPERFAMILY SSF55816 394 608 3.4E-39 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 PRINTS PR01607 Apyrase family signature 224 241 2.8E-21 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 PRINTS PR01607 Apyrase family signature 243 266 2.8E-21 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 PRINTS PR01607 Apyrase family signature 541 560 2.8E-21 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 PRINTS PR01607 Apyrase family signature 456 479 2.8E-21 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 PRINTS PR01607 Apyrase family signature 32 50 2.8E-21 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 Pfam PF02872 5'-nucleotidase, C-terminal domain 419 564 9.5E-27 T 14-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 Gene3D G3DSA:3.90.780.10 394 608 5.4E-45 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 Pfam PF00149 Calcineurin-like phosphoesterase 34 259 9.9E-12 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RY45_05545 16ddf13428e6d7d3ac267ce55879eb15 612 Gene3D G3DSA:3.60.21.10 23 393 4.0E-102 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_19820 3ad5f50f36a086be7703dadc1a3d9d0f 68 Gene3D G3DSA:1.10.10.1100 1 56 9.4E-22 T 14-10-2018 RY45_19820 3ad5f50f36a086be7703dadc1a3d9d0f 68 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 5.1E-14 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RY45_06605 a531912366c8947b06d7ee212549e8d4 253 SMART SM00062 25 250 2.3E-4 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_06605 a531912366c8947b06d7ee212549e8d4 253 Gene3D G3DSA:3.40.190.10 29 243 4.1E-32 T 14-10-2018 RY45_06605 a531912366c8947b06d7ee212549e8d4 253 Gene3D G3DSA:3.40.190.10 112 205 4.1E-32 T 14-10-2018 RY45_06605 a531912366c8947b06d7ee212549e8d4 253 SUPERFAMILY SSF53850 27 244 6.35E-34 T 14-10-2018 RY45_06605 a531912366c8947b06d7ee212549e8d4 253 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 243 1.8E-22 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 SUPERFAMILY SSF51120 3089 3522 2.75E-21 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 TIGRFAM TIGR03660 T1SS_rpt_143: T1SS-143 repeat domain 764 887 1.4E-19 T 14-10-2018 IPR019959 T1SS-143 repeat-containing domain RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 TIGRFAM TIGR03660 T1SS_rpt_143: T1SS-143 repeat domain 1501 1625 4.4E-27 T 14-10-2018 IPR019959 T1SS-143 repeat-containing domain RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3420 3438 - T 14-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 Gene3D G3DSA:2.60.40.10 167 267 6.1E-10 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 Gene3D G3DSA:2.60.40.10 360 459 3.3E-8 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 Gene3D G3DSA:2.150.10.10 3373 3536 5.2E-20 T 14-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 3465 3560 1.0E-18 T 14-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 Gene3D G3DSA:2.60.40.10 282 359 2.7E-12 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_10565 7b629f231c77eb7d096e9d2cdf604278 3564 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 3429 3447 - T 14-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site RY45_03645 0e4afc4d02fda26db28a4b4a46c3bba5 371 Gene3D G3DSA:1.10.10.2840 244 371 3.9E-23 T 14-10-2018 RY45_03645 0e4afc4d02fda26db28a4b4a46c3bba5 371 Pfam PF05651 Putative sugar diacid recognition 3 136 9.9E-53 T 14-10-2018 IPR008599 Putative sugar diacid recognition RY45_03645 0e4afc4d02fda26db28a4b4a46c3bba5 371 Pfam PF13556 PucR C-terminal helix-turn-helix domain 311 368 5.6E-20 T 14-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RY45_21560 544330af4668f458643a8704d60c8f24 384 Gene3D G3DSA:2.40.50.140 306 357 1.1E-8 T 14-10-2018 RY45_21560 544330af4668f458643a8704d60c8f24 384 SUPERFAMILY SSF52540 22 260 1.91E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21560 544330af4668f458643a8704d60c8f24 384 SMART SM00382 47 230 8.9E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_21560 544330af4668f458643a8704d60c8f24 384 Gene3D G3DSA:3.40.50.300 22 240 5.4E-68 T 14-10-2018 RY45_21560 544330af4668f458643a8704d60c8f24 384 Pfam PF08402 TOBE domain 300 382 3.6E-14 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RY45_21560 544330af4668f458643a8704d60c8f24 384 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_21560 544330af4668f458643a8704d60c8f24 384 Gene3D G3DSA:2.40.50.940 241 305 1.1E-8 T 14-10-2018 RY45_21560 544330af4668f458643a8704d60c8f24 384 Pfam PF00005 ABC transporter 38 180 3.4E-37 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_21560 544330af4668f458643a8704d60c8f24 384 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 53 382 1.1E-127 T 14-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RY45_21560 544330af4668f458643a8704d60c8f24 384 SUPERFAMILY SSF50331 255 382 8.08E-16 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RY45_03125 93154faaa7e1a84f7b52e8f09ea8a52f 96 Pfam PF03692 Putative zinc- or iron-chelating domain 11 80 5.6E-11 T 14-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein RY45_18840 e63ad2a310bacbe48745367af2e1d3c6 126 PIRSF PIRSF028141 1 120 6.6E-50 T 14-10-2018 IPR027021 Cyclic di-GMP binding protein, PA4608 type RY45_18840 e63ad2a310bacbe48745367af2e1d3c6 126 Gene3D G3DSA:2.40.10.220 1 122 1.5E-36 T 14-10-2018 RY45_18840 e63ad2a310bacbe48745367af2e1d3c6 126 SUPERFAMILY SSF141371 1 118 8.63E-34 T 14-10-2018 RY45_18840 e63ad2a310bacbe48745367af2e1d3c6 126 Pfam PF07238 PilZ domain 3 100 4.2E-11 T 14-10-2018 IPR009875 PilZ domain GO:0035438 RY45_15100 b74be096e8f24fe294ddbfc17851a419 206 Gene3D G3DSA:3.90.870.10 1 205 1.2E-67 T 14-10-2018 RY45_15100 b74be096e8f24fe294ddbfc17851a419 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 7.7E-69 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 RY45_15100 b74be096e8f24fe294ddbfc17851a419 206 SUPERFAMILY SSF55821 1 203 6.41E-65 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RY45_15100 b74be096e8f24fe294ddbfc17851a419 206 Pfam PF01300 Telomere recombination 22 198 5.3E-45 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 SMART SM00062 34 253 1.7E-4 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 SMART SM00267 290 459 2.2E-42 T 14-10-2018 IPR000160 GGDEF domain RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 Pfam PF00990 Diguanylate cyclase, GGDEF domain 302 455 8.0E-34 T 14-10-2018 IPR000160 GGDEF domain RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 Gene3D G3DSA:3.40.190.10 35 249 2.4E-35 T 14-10-2018 RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 SUPERFAMILY SSF53850 35 252 7.39E-38 T 14-10-2018 RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 250 6.1E-30 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 297 458 9.0E-33 T 14-10-2018 IPR000160 GGDEF domain RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 Gene3D G3DSA:3.40.190.10 119 212 2.4E-35 T 14-10-2018 RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 SUPERFAMILY SSF55073 306 457 2.98E-34 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_20715 c93336826da7abdb23bb24c0b7f27a0b 471 Gene3D G3DSA:3.30.70.270 287 460 1.6E-41 T 14-10-2018 RY45_19080 94a1761d34d2252f78f97cf234d10790 685 Pfam PF10145 Phage-related minor tail protein 96 287 1.8E-25 T 14-10-2018 IPR010090 Phage tail tape measure protein RY45_19080 94a1761d34d2252f78f97cf234d10790 685 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 52 363 1.9E-23 T 14-10-2018 IPR010090 Phage tail tape measure protein RY45_19305 6f8d42a469000235ba52d2b38d84a3bf 254 SUPERFAMILY SSF52540 4 214 2.71E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19305 6f8d42a469000235ba52d2b38d84a3bf 254 Gene3D G3DSA:3.40.50.300 1 231 1.3E-59 T 14-10-2018 RY45_19305 6f8d42a469000235ba52d2b38d84a3bf 254 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_19305 6f8d42a469000235ba52d2b38d84a3bf 254 Pfam PF00005 ABC transporter 20 147 8.8E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_19305 6f8d42a469000235ba52d2b38d84a3bf 254 SMART SM00382 29 196 1.4E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 4 331 37.308 T 14-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 4 331 1.5E-101 T 14-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 Pfam PF13353 4Fe-4S single cluster domain 22 127 3.7E-7 T 14-10-2018 RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 SUPERFAMILY SSF102114 3 280 7.46E-73 T 14-10-2018 RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 14-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 Gene3D G3DSA:3.20.20.70 1 331 1.7E-81 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 Pfam PF06463 Molybdenum Cofactor Synthesis C 188 314 5.0E-35 T 14-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 Pfam PF04055 Radical SAM superfamily 18 183 2.7E-30 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_14710 77a339dc43b9ccf4ba85e9af229d678d 331 SMART SM00729 13 224 1.6E-7 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_18970 b1b481669c7c27e20f85d16a75e09303 85 Pfam PF01381 Helix-turn-helix 12 62 5.0E-7 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_18970 b1b481669c7c27e20f85d16a75e09303 85 Gene3D G3DSA:1.10.260.40 4 84 5.3E-16 T 14-10-2018 RY45_18970 b1b481669c7c27e20f85d16a75e09303 85 SUPERFAMILY SSF47413 8 62 2.39E-9 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_18970 b1b481669c7c27e20f85d16a75e09303 85 SMART SM00530 11 66 1.0E-5 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_08295 52d5e3d8134bb1434a7cff094c645cb7 381 Pfam PF01979 Amidohydrolase family 51 377 1.3E-36 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_08295 52d5e3d8134bb1434a7cff094c645cb7 381 SUPERFAMILY SSF51338 1 53 7.68E-16 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_08295 52d5e3d8134bb1434a7cff094c645cb7 381 SUPERFAMILY SSF51556 54 350 3.14E-97 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_08295 52d5e3d8134bb1434a7cff094c645cb7 381 Gene3D G3DSA:2.30.40.10 6 376 5.0E-133 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_08295 52d5e3d8134bb1434a7cff094c645cb7 381 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 376 3.6E-140 T 14-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 RY45_08295 52d5e3d8134bb1434a7cff094c645cb7 381 Gene3D G3DSA:3.20.20.140 55 344 5.0E-133 T 14-10-2018 RY45_08295 52d5e3d8134bb1434a7cff094c645cb7 381 PIRSF PIRSF038994 1 381 3.2E-113 T 14-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 RY45_14375 de1089fb7d5ea893dc043505588496cc 152 Gene3D G3DSA:3.40.630.30 6 152 7.2E-37 T 14-10-2018 RY45_14375 de1089fb7d5ea893dc043505588496cc 152 PIRSF PIRSF000452 1 152 4.6E-64 T 14-10-2018 IPR024170 Aminoglycoside N6-acetyltransferase RY45_14375 de1089fb7d5ea893dc043505588496cc 152 SUPERFAMILY SSF55729 6 147 2.03E-27 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_14375 de1089fb7d5ea893dc043505588496cc 152 Pfam PF00583 Acetyltransferase (GNAT) family 46 138 2.3E-14 T 14-10-2018 IPR000182 GNAT domain RY45_12495 75cd6339925f42ede48161e2c431bf3d 279 Gene3D G3DSA:1.10.12.10 217 277 5.1E-16 T 14-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RY45_12495 75cd6339925f42ede48161e2c431bf3d 279 Gene3D G3DSA:3.90.226.10 12 216 5.4E-55 T 14-10-2018 RY45_12495 75cd6339925f42ede48161e2c431bf3d 279 Pfam PF00378 Enoyl-CoA hydratase/isomerase 21 272 6.0E-36 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RY45_12495 75cd6339925f42ede48161e2c431bf3d 279 SUPERFAMILY SSF52096 13 274 7.62E-67 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_01650 f74671b1baaf1ed83ca47fd0e0ff0257 333 Gene3D G3DSA:3.20.20.140 2 333 1.7E-100 T 14-10-2018 RY45_01650 f74671b1baaf1ed83ca47fd0e0ff0257 333 Pfam PF00962 Adenosine/AMP deaminase 6 326 1.7E-92 T 14-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 RY45_01650 f74671b1baaf1ed83ca47fd0e0ff0257 333 Hamap MF_00540 Adenosine deaminase [add]. 1 331 53.168 T 14-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 RY45_01650 f74671b1baaf1ed83ca47fd0e0ff0257 333 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 329 2.6E-115 T 14-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 RY45_01650 f74671b1baaf1ed83ca47fd0e0ff0257 333 SUPERFAMILY SSF51556 4 325 9.08E-77 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_11680 ee469507d3616eaa23900f1225652ac3 214 SUPERFAMILY SSF52540 9 205 4.81E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11680 ee469507d3616eaa23900f1225652ac3 214 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 6.8E-43 T 14-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 Gene3D G3DSA:3.40.50.300 4 213 1.4E-59 T 14-10-2018 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 PRINTS PR00988 Uridine kinase signature 179 192 2.1E-36 T 14-10-2018 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 PRINTS PR00988 Uridine kinase signature 157 168 2.1E-36 T 14-10-2018 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 PRINTS PR00988 Uridine kinase signature 143 153 2.1E-36 T 14-10-2018 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 PRINTS PR00988 Uridine kinase signature 87 102 2.1E-36 T 14-10-2018 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 PRINTS PR00988 Uridine kinase signature 42 53 2.1E-36 T 14-10-2018 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 PRINTS PR00988 Uridine kinase signature 8 25 2.1E-36 T 14-10-2018 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 TIGRFAM TIGR00235 udk: uridine kinase 5 212 2.0E-88 T 14-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 RY45_11680 ee469507d3616eaa23900f1225652ac3 214 Hamap MF_00551 Uridine kinase [udk]. 5 213 39.629 T 14-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 RY45_11290 605f90494fc1bfbec95f76a7bd7b4c39 549 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 199 349 1.2E-22 T 14-10-2018 IPR000160 GGDEF domain RY45_11290 605f90494fc1bfbec95f76a7bd7b4c39 549 SMART SM00267 190 352 1.5E-25 T 14-10-2018 IPR000160 GGDEF domain RY45_11290 605f90494fc1bfbec95f76a7bd7b4c39 549 Gene3D G3DSA:3.30.70.270 197 368 1.2E-34 T 14-10-2018 RY45_11290 605f90494fc1bfbec95f76a7bd7b4c39 549 Pfam PF00990 Diguanylate cyclase, GGDEF domain 201 345 5.0E-30 T 14-10-2018 IPR000160 GGDEF domain RY45_11290 605f90494fc1bfbec95f76a7bd7b4c39 549 SUPERFAMILY SSF55073 206 351 3.22E-27 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_07465 75d51659cb194adf02d338eb772d808d 314 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 95 109 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RY45_07465 75d51659cb194adf02d338eb772d808d 314 Gene3D G3DSA:3.30.70.580 48 123 8.4E-28 T 14-10-2018 RY45_07465 75d51659cb194adf02d338eb772d808d 314 Pfam PF00849 RNA pseudouridylate synthase 60 204 6.8E-16 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_07465 75d51659cb194adf02d338eb772d808d 314 SUPERFAMILY SSF55120 57 239 4.48E-45 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_07465 75d51659cb194adf02d338eb772d808d 314 Gene3D G3DSA:3.30.70.1560 124 223 1.4E-41 T 14-10-2018 RY45_07465 75d51659cb194adf02d338eb772d808d 314 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 64 234 3.6E-56 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RY45_11140 bb3bc404506638ac071626fe1b051f5a 189 SUPERFAMILY SSF51182 4 173 1.8E-27 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_11140 bb3bc404506638ac071626fe1b051f5a 189 Gene3D G3DSA:2.60.120.10 3 185 4.5E-47 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_11140 bb3bc404506638ac071626fe1b051f5a 189 Pfam PF06560 Glucose-6-phosphate isomerase (GPI) 28 176 1.2E-16 T 14-10-2018 IPR010551 Glucose-6-phosphate isomerase, prokaryote GO:0004347|GO:0005737|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 SUPERFAMILY SSF52540 140 383 8.77E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 Gene3D G3DSA:1.10.10.60 385 472 7.8E-27 T 14-10-2018 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 Gene3D G3DSA:3.40.50.2300 2 123 3.9E-40 T 14-10-2018 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 SUPERFAMILY SSF52172 4 186 6.4E-44 T 14-10-2018 IPR011006 CheY-like superfamily RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 Pfam PF00158 Sigma-54 interaction domain 141 308 1.8E-70 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 Gene3D G3DSA:1.10.8.60 313 384 3.7E-20 T 14-10-2018 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 SUPERFAMILY SSF46689 381 471 6.27E-21 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 Pfam PF00072 Response regulator receiver domain 5 114 2.1E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 Gene3D G3DSA:3.40.50.300 125 312 2.3E-66 T 14-10-2018 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 SMART SM00382 161 308 7.7E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 SMART SM00448 3 114 3.3E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 Pfam PF02954 Bacterial regulatory protein, Fis family 429 469 1.8E-16 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 452 472 2.3E-9 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 435 452 2.3E-9 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_01655 21f1ce4d9bac27e9c677049c5af5b389 472 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 5 469 6.0E-231 T 14-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SUPERFAMILY SSF51445 134 563 7.21E-100 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SMART SM00089 51 133 8.1E-5 T 14-10-2018 IPR022409 PKD/Chitinase domain RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SMART SM00089 672 758 0.12 T 14-10-2018 IPR022409 PKD/Chitinase domain RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Gene3D G3DSA:3.10.50.10 443 523 1.8E-160 T 14-10-2018 IPR029070 Chitinase insertion domain superfamily RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SUPERFAMILY SSF54556 444 521 3.21E-15 T 14-10-2018 IPR029070 Chitinase insertion domain superfamily RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SUPERFAMILY SSF51055 823 865 2.62E-12 T 14-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 ProSitePatterns PS01095 Chitinases family 18 active site. 307 315 - T 14-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Gene3D G3DSA:2.10.10.20 821 867 1.9E-14 T 14-10-2018 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SMART SM00495 821 863 2.7E-12 T 14-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SMART SM00495 774 817 1.0E-13 T 14-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SUPERFAMILY SSF51055 765 819 1.57E-13 T 14-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Pfam PF00704 Glycosyl hydrolases family 18 161 549 1.8E-86 T 14-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Gene3D G3DSA:2.10.10.20 775 816 2.6E-13 T 14-10-2018 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SMART SM00636 158 549 8.4E-156 T 14-10-2018 IPR011583 Chitinase II GO:0008061 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Gene3D G3DSA:2.60.40.10 7 130 1.5E-46 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Pfam PF08329 Chitinase A, N-terminal domain 23 155 2.5E-59 T 14-10-2018 IPR013540 Chitinase A N-terminal GO:0004568|GO:0006032 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Gene3D G3DSA:2.60.40.10 668 767 5.5E-11 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Gene3D G3DSA:3.20.20.80 158 555 1.8E-160 T 14-10-2018 RY45_05390 dcbb44245a9d502c5289809e6672368f 869 Gene3D G3DSA:2.60.40.10 572 667 1.7E-19 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_05390 dcbb44245a9d502c5289809e6672368f 869 SUPERFAMILY SSF81296 24 132 5.88E-36 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_18540 4a03c5bc56b623f19c0d5829a54c8efa 334 Pfam PF00107 Zinc-binding dehydrogenase 158 282 1.0E-28 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RY45_18540 4a03c5bc56b623f19c0d5829a54c8efa 334 SUPERFAMILY SSF50129 5 144 6.64E-37 T 14-10-2018 IPR011032 GroES-like superfamily RY45_18540 4a03c5bc56b623f19c0d5829a54c8efa 334 Gene3D G3DSA:3.40.50.720 126 302 6.0E-126 T 14-10-2018 RY45_18540 4a03c5bc56b623f19c0d5829a54c8efa 334 SUPERFAMILY SSF51735 124 298 3.94E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_18540 4a03c5bc56b623f19c0d5829a54c8efa 334 Gene3D G3DSA:3.90.180.10 21 330 6.0E-126 T 14-10-2018 RY45_18540 4a03c5bc56b623f19c0d5829a54c8efa 334 SMART SM00829 16 331 2.5E-9 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RY45_18540 4a03c5bc56b623f19c0d5829a54c8efa 334 Pfam PF16884 N-terminal domain of oxidoreductase 6 112 2.4E-38 T 14-10-2018 RY45_02415 78a29ca8596eb440b34ce843e09faff8 190 Pfam PF12833 Helix-turn-helix domain 116 187 4.5E-19 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_02415 78a29ca8596eb440b34ce843e09faff8 190 SUPERFAMILY SSF46689 93 145 1.08E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_02415 78a29ca8596eb440b34ce843e09faff8 190 SMART SM00342 110 186 3.2E-11 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_02415 78a29ca8596eb440b34ce843e09faff8 190 Gene3D G3DSA:1.10.10.60 95 189 5.1E-18 T 14-10-2018 RY45_07415 0606f5eb021e69fa133265528f5ea7e3 204 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 76 3.1E-13 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_07415 0606f5eb021e69fa133265528f5ea7e3 204 Gene3D G3DSA:3.40.30.10 1 77 3.3E-24 T 14-10-2018 RY45_07415 0606f5eb021e69fa133265528f5ea7e3 204 SUPERFAMILY SSF47616 76 193 3.82E-28 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_07415 0606f5eb021e69fa133265528f5ea7e3 204 Gene3D G3DSA:1.20.1050.10 81 194 1.1E-39 T 14-10-2018 RY45_07415 0606f5eb021e69fa133265528f5ea7e3 204 Pfam PF00043 Glutathione S-transferase, C-terminal domain 112 192 1.8E-11 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal RY45_07415 0606f5eb021e69fa133265528f5ea7e3 204 SUPERFAMILY SSF52833 1 85 6.41E-22 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SUPERFAMILY SSF141868 563 808 4.84E-83 T 14-10-2018 IPR035919 EAL domain superfamily RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Gene3D G3DSA:3.30.450.20 140 207 5.2E-13 T 14-10-2018 RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 144 2.3E-13 T 14-10-2018 IPR000014 PAS domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 267 383 2.7E-15 T 14-10-2018 IPR000014 PAS domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 383 545 3.9E-46 T 14-10-2018 IPR000160 GGDEF domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SMART SM00052 558 803 3.5E-112 T 14-10-2018 IPR001633 EAL domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Gene3D G3DSA:3.30.450.20 15 139 5.9E-25 T 14-10-2018 RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SMART SM00267 376 548 4.0E-69 T 14-10-2018 IPR000160 GGDEF domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Pfam PF13426 PAS domain 273 374 1.4E-10 T 14-10-2018 IPR000014 PAS domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Gene3D G3DSA:3.30.450.20 264 385 5.7E-25 T 14-10-2018 RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Gene3D G3DSA:3.20.20.450 562 810 1.5E-96 T 14-10-2018 IPR035919 EAL domain superfamily RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SUPERFAMILY SSF55785 154 263 5.9E-5 T 14-10-2018 IPR035965 PAS domain superfamily RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SUPERFAMILY SSF55785 273 383 3.32E-21 T 14-10-2018 IPR035965 PAS domain superfamily RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SUPERFAMILY SSF55073 392 550 3.14E-51 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SMART SM00086 212 254 160.0 T 14-10-2018 IPR001610 PAC motif RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SMART SM00086 334 376 1.1 T 14-10-2018 IPR001610 PAC motif RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SMART SM00086 95 137 30.0 T 14-10-2018 IPR001610 PAC motif RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Pfam PF08448 PAS fold 27 138 2.6E-18 T 14-10-2018 IPR013656 PAS fold-4 RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Pfam PF00990 Diguanylate cyclase, GGDEF domain 387 543 2.5E-51 T 14-10-2018 IPR000160 GGDEF domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SMART SM00091 21 86 0.38 T 14-10-2018 IPR000014 PAS domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SMART SM00091 142 206 34.0 T 14-10-2018 IPR000014 PAS domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SMART SM00091 262 328 8.6E-7 T 14-10-2018 IPR000014 PAS domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Gene3D G3DSA:3.30.70.270 386 561 5.2E-63 T 14-10-2018 RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 Pfam PF00563 EAL domain 566 798 3.1E-72 T 14-10-2018 IPR001633 EAL domain RY45_17235 17607961ecd7015f33747498ba7d7fdf 816 SUPERFAMILY SSF55785 20 135 3.66E-16 T 14-10-2018 IPR035965 PAS domain superfamily RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 167 185 - T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 249 5.8E-97 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 8.2E-23 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 PRINTS PR00599 Methionine aminopeptidase-1 signature 161 173 8.2E-23 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 PRINTS PR00599 Methionine aminopeptidase-1 signature 91 107 8.2E-23 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 8.2E-23 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 Hamap MF_01974 Methionine aminopeptidase [map]. 3 250 41.917 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 Gene3D G3DSA:3.90.230.10 1 259 4.3E-112 T 14-10-2018 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 Pfam PF00557 Metallopeptidase family M24 12 241 1.1E-55 T 14-10-2018 IPR000994 Peptidase M24 RY45_06290 6497d899cc6f6ed362222f4de8474f3b 262 SUPERFAMILY SSF55920 3 252 4.45E-91 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 Pfam PF00206 Lyase 6 301 1.4E-93 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 2.5E-21 T 14-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 39.805 T 14-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 Gene3D G3DSA:1.10.275.10 1 107 3.9E-37 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 5.9E-28 T 14-10-2018 IPR000362 Fumarate lyase family RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 5.9E-28 T 14-10-2018 IPR000362 Fumarate lyase family RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 5.9E-28 T 14-10-2018 IPR000362 Fumarate lyase family RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 5.9E-28 T 14-10-2018 IPR000362 Fumarate lyase family RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 453 2.5E-196 T 14-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 Gene3D G3DSA:1.10.40.30 363 433 4.0E-138 T 14-10-2018 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 SUPERFAMILY SSF48557 3 456 1.01E-133 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.4E-65 T 14-10-2018 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.4E-65 T 14-10-2018 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.4E-65 T 14-10-2018 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.4E-65 T 14-10-2018 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.4E-65 T 14-10-2018 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.4E-65 T 14-10-2018 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RY45_03425 297e9c608e1ea3b33acb39c66a961ef5 461 Gene3D G3DSA:1.20.200.10 108 445 4.0E-138 T 14-10-2018 RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 PRINTS PR00412 Epoxide hydrolase signature 240 262 1.2E-7 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 PRINTS PR00412 Epoxide hydrolase signature 46 61 1.2E-7 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 PRINTS PR00412 Epoxide hydrolase signature 105 118 1.2E-7 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 SUPERFAMILY SSF53474 3 264 2.23E-58 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 Pfam PF00561 alpha/beta hydrolase fold 22 124 1.4E-16 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 Gene3D G3DSA:3.40.50.1820 1 266 1.0E-52 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 9.1E-9 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 210 224 9.1E-9 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 9.1E-9 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_09150 3e6fd330749ff2de0c44e10e42b91ee0 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 9.1E-9 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_13970 f0b5d4fdef882577f68c72263703006c 114 PIRSF PIRSF017117 1 110 1.5E-44 T 14-10-2018 IPR016684 Type III secretion system chaperone, YscY RY45_13970 f0b5d4fdef882577f68c72263703006c 114 SUPERFAMILY SSF48452 5 109 8.01E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_13970 f0b5d4fdef882577f68c72263703006c 114 Gene3D G3DSA:1.25.40.10 1 113 2.7E-12 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_13970 f0b5d4fdef882577f68c72263703006c 114 Pfam PF14559 Tetratricopeptide repeat 19 74 5.0E-6 T 14-10-2018 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Pfam PF13380 CoA binding domain 14 132 1.1E-21 T 14-10-2018 IPR003781 CoA-binding GO:0048037 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 SUPERFAMILY SSF55729 696 840 1.22E-20 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 SUPERFAMILY SSF51735 5 137 2.48E-31 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Gene3D G3DSA:3.30.1490.20 474 551 1.1E-51 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 SUPERFAMILY SSF52210 127 276 1.31E-33 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Pfam PF13549 ATP-grasp domain 447 666 5.9E-65 T 14-10-2018 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 149 275 1.6E-39 T 14-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 SUPERFAMILY SSF56059 454 666 1.68E-21 T 14-10-2018 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 SMART SM00881 9 104 1.7E-25 T 14-10-2018 IPR003781 CoA-binding GO:0048037 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Pfam PF00583 Acetyltransferase (GNAT) family 734 835 6.1E-9 T 14-10-2018 IPR000182 GNAT domain RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 SUPERFAMILY SSF52210 282 422 5.63E-28 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Gene3D G3DSA:3.40.50.261 311 430 7.7E-24 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Gene3D G3DSA:3.40.630.30 689 857 7.4E-42 T 14-10-2018 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Gene3D G3DSA:3.40.50.261 128 278 6.1E-41 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Gene3D G3DSA:3.40.50.720 4 127 2.0E-34 T 14-10-2018 RY45_01040 c15bde7f54c636bd9a1f8f09ed6e1e56 858 Gene3D G3DSA:3.30.470.20 455 663 1.1E-51 T 14-10-2018 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Gene3D G3DSA:1.10.287.130 321 407 9.0E-25 T 14-10-2018 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SUPERFAMILY SSF103190 206 296 1.33E-22 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SUPERFAMILY SSF47384 333 410 2.75E-20 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SMART SM00387 456 572 7.2E-41 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Pfam PF00072 Response regulator receiver domain 589 703 5.1E-16 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Pfam PF00072 Response regulator receiver domain 731 843 1.2E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Gene3D G3DSA:3.40.50.2300 579 715 2.0E-27 T 14-10-2018 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SUPERFAMILY SSF52172 727 849 1.99E-37 T 14-10-2018 IPR011006 CheY-like superfamily RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Gene3D G3DSA:3.30.450.20 203 283 1.6E-7 T 14-10-2018 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Gene3D G3DSA:3.30.565.10 408 575 3.5E-51 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SMART SM00388 344 409 7.0E-22 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Gene3D G3DSA:3.30.450.20 72 201 1.0E-36 T 14-10-2018 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 571 6.1E-32 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Gene3D G3DSA:3.40.50.12740 728 856 2.3E-41 T 14-10-2018 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SUPERFAMILY SSF47226 827 951 1.09E-12 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 525 2.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 511 2.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 PRINTS PR00344 Bacterial sensor protein C-terminal signature 556 569 2.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 PRINTS PR00344 Bacterial sensor protein C-terminal signature 532 550 2.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Pfam PF00512 His Kinase A (phospho-acceptor) domain 345 409 8.3E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SUPERFAMILY SSF55874 398 570 3.41E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Gene3D G3DSA:1.20.120.160 867 973 9.9E-11 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SUPERFAMILY SSF52172 586 714 5.27E-27 T 14-10-2018 IPR011006 CheY-like superfamily RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 Pfam PF01627 Hpt domain 889 968 3.1E-6 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SUPERFAMILY SSF103190 38 200 2.82E-41 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SMART SM00448 586 703 4.8E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11750 36b40e44f77c13f1a70b9754b4235f06 1056 SMART SM00448 729 844 6.5E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 Pfam PF01019 Gamma-glutamyltranspeptidase 67 587 3.0E-145 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 Gene3D G3DSA:3.60.20.40 408 592 4.8E-57 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 295 314 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 469 484 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 432 450 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 495 512 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 410 428 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 164 183 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 146 164 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 265 281 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 74 99 1.3E-65 T 14-10-2018 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 SUPERFAMILY SSF56235 47 591 1.7E-157 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 53 584 6.8E-110 T 14-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 RY45_15740 d779b1ffbf053c5df160a6fcda955641 592 Gene3D G3DSA:1.10.246.130 282 407 2.8E-32 T 14-10-2018 RY45_16940 617074026c6ed09d4975ffb9a8b4cb5d 453 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 37 444 3.4E-32 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RY45_16940 617074026c6ed09d4975ffb9a8b4cb5d 453 SUPERFAMILY SSF56219 35 453 3.8E-17 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_16940 617074026c6ed09d4975ffb9a8b4cb5d 453 Gene3D G3DSA:3.60.10.10 73 453 5.2E-14 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 Pfam PF00326 Prolyl oligopeptidase family 477 689 1.9E-60 T 14-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 154 416 4.9E-19 T 14-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 Gene3D G3DSA:2.130.10.120 109 424 1.2E-150 T 14-10-2018 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 SUPERFAMILY SSF53474 430 684 1.36E-46 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 Gene3D G3DSA:3.40.50.1820 58 684 1.2E-150 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 SUPERFAMILY SSF50993 55 420 8.37E-32 T 14-10-2018 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 602 617 9.4E-40 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 460 478 9.4E-40 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 514 533 9.4E-40 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 544 564 9.4E-40 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 486 510 9.4E-40 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_09100 4ab48683327b83061a0f4bfbe9cd12a0 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 620 642 9.4E-40 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_18240 b9977676367bafcc1a758fa6d1360fb1 204 SUPERFAMILY SSF48498 91 201 9.46E-17 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_18240 b9977676367bafcc1a758fa6d1360fb1 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.1E-6 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_18240 b9977676367bafcc1a758fa6d1360fb1 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.1E-6 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_18240 b9977676367bafcc1a758fa6d1360fb1 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 1.2E-12 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_18240 b9977676367bafcc1a758fa6d1360fb1 204 Gene3D G3DSA:1.10.357.10 1 198 2.8E-51 T 14-10-2018 RY45_18240 b9977676367bafcc1a758fa6d1360fb1 204 SUPERFAMILY SSF46689 8 90 1.9E-17 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_00170 26825a6012538971134b66222dce79fe 270 ProSitePatterns PS01229 Hypothetical cof family signature 2. 210 232 - T 14-10-2018 RY45_00170 26825a6012538971134b66222dce79fe 270 SUPERFAMILY SSF56784 1 262 1.29E-76 T 14-10-2018 IPR036412 HAD-like superfamily RY45_00170 26825a6012538971134b66222dce79fe 270 Gene3D G3DSA:3.40.50.1000 3 259 3.0E-74 T 14-10-2018 IPR023214 HAD superfamily RY45_00170 26825a6012538971134b66222dce79fe 270 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 14-10-2018 RY45_00170 26825a6012538971134b66222dce79fe 270 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 258 7.1E-65 T 14-10-2018 IPR000150 Cof family GO:0016787 RY45_00170 26825a6012538971134b66222dce79fe 270 Gene3D G3DSA:3.30.1240.10 82 185 3.0E-74 T 14-10-2018 RY45_00170 26825a6012538971134b66222dce79fe 270 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 258 4.9E-68 T 14-10-2018 RY45_00170 26825a6012538971134b66222dce79fe 270 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 2.9E-36 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RY45_08200 34fa055de7496106cf2a1e27715b93d3 394 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 263 283 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_08200 34fa055de7496106cf2a1e27715b93d3 394 SUPERFAMILY SSF56796 4 393 2.36E-103 T 14-10-2018 RY45_08200 34fa055de7496106cf2a1e27715b93d3 394 Gene3D G3DSA:1.20.1090.10 189 394 7.4E-54 T 14-10-2018 RY45_08200 34fa055de7496106cf2a1e27715b93d3 394 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 176 204 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_08200 34fa055de7496106cf2a1e27715b93d3 394 Gene3D G3DSA:3.40.50.1970 1 187 4.9E-52 T 14-10-2018 RY45_08200 34fa055de7496106cf2a1e27715b93d3 394 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 383 1.4E-102 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 SUPERFAMILY SSF82866 74 295 8.63E-40 T 14-10-2018 RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 91 281 4.0E-54 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 Pfam PF07549 SecD/SecF GG Motif 33 60 4.0E-11 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 11 295 27.672 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 39 284 4.8E-82 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 Gene3D G3DSA:1.20.1640.10 107 303 4.8E-11 T 14-10-2018 RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 Pfam PF02355 Protein export membrane protein 112 291 1.3E-64 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 PRINTS PR01755 Bacterial translocase SecF protein signature 232 247 4.0E-31 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 PRINTS PR01755 Bacterial translocase SecF protein signature 38 53 4.0E-31 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 PRINTS PR01755 Bacterial translocase SecF protein signature 152 166 4.0E-31 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_09485 da7cc4f22187d0a3ab883aceb986c76b 315 PRINTS PR01755 Bacterial translocase SecF protein signature 200 218 4.0E-31 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 SUPERFAMILY SSF64518 1 279 3.01E-75 T 14-10-2018 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 Gene3D G3DSA:1.20.58.1830 5 33 1.1E-57 T 14-10-2018 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 Gene3D G3DSA:2.170.280.10 180 191 1.1E-57 T 14-10-2018 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 Gene3D G3DSA:1.20.1330.10 45 179 1.1E-57 T 14-10-2018 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 139 9.8E-38 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 Pfam PF00700 Bacterial flagellin C-terminal helical region 194 278 2.4E-24 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 PRINTS PR00207 Flagellin signature 76 95 2.6E-20 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 PRINTS PR00207 Flagellin signature 111 134 2.6E-20 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 PRINTS PR00207 Flagellin signature 37 54 2.6E-20 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_20210 f0964a55e9fab8f608d9173c45cf8cdf 279 Gene3D G3DSA:1.10.8.410 226 279 3.0E-17 T 14-10-2018 RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.4E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.4E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.4E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 Gene3D G3DSA:1.10.10.10 8 97 1.1E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 2.9E-23 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 SUPERFAMILY SSF46785 8 114 4.97E-24 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 Gene3D G3DSA:3.40.190.10 164 254 2.1E-37 T 14-10-2018 RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 SUPERFAMILY SSF53850 96 287 4.34E-25 T 14-10-2018 RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 Gene3D G3DSA:3.40.190.10 104 280 2.1E-37 T 14-10-2018 RY45_20920 7b45b72a8fc3dfc47990befd0abae238 297 Pfam PF03466 LysR substrate binding domain 96 281 1.4E-22 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_21330 21a8d43f5a301cf92609185cca650add 163 SUPERFAMILY SSF55252 90 154 3.14E-15 T 14-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 RY45_21330 21a8d43f5a301cf92609185cca650add 163 PRINTS PR01467 Bacterial arginine repressor signature 98 111 3.5E-16 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_21330 21a8d43f5a301cf92609185cca650add 163 PRINTS PR01467 Bacterial arginine repressor signature 128 143 3.5E-16 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_21330 21a8d43f5a301cf92609185cca650add 163 PRINTS PR01467 Bacterial arginine repressor signature 49 64 3.5E-16 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_21330 21a8d43f5a301cf92609185cca650add 163 PRINTS PR01467 Bacterial arginine repressor signature 32 45 3.5E-16 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_21330 21a8d43f5a301cf92609185cca650add 163 SUPERFAMILY SSF46785 16 80 4.9E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_21330 21a8d43f5a301cf92609185cca650add 163 Gene3D G3DSA:1.10.10.10 9 82 1.1E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21330 21a8d43f5a301cf92609185cca650add 163 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 97 159 3.0E-7 T 14-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 RY45_21330 21a8d43f5a301cf92609185cca650add 163 Pfam PF02863 Arginine repressor, C-terminal domain 91 149 1.3E-16 T 14-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 RY45_21330 21a8d43f5a301cf92609185cca650add 163 Pfam PF01316 Arginine repressor, DNA binding domain 21 80 1.4E-14 T 14-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 RY45_21330 21a8d43f5a301cf92609185cca650add 163 Gene3D G3DSA:3.30.1360.40 83 162 2.5E-22 T 14-10-2018 RY45_21330 21a8d43f5a301cf92609185cca650add 163 Hamap MF_00173 Arginine repressor [argR]. 1 162 40.455 T 14-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RY45_16355 71748ab3e33f54d1ef37902fa8a7777d 133 Pfam PF07784 Protein of unknown function (DUF1622) 45 107 1.6E-23 T 14-10-2018 IPR012427 Protein of unknown function DUF1622 RY45_18640 edc7187b011c7b51f9031de5a099a8e4 387 Gene3D G3DSA:3.30.1150.10 288 386 1.6E-26 T 14-10-2018 RY45_18640 edc7187b011c7b51f9031de5a099a8e4 387 SUPERFAMILY SSF74653 297 384 1.12E-18 T 14-10-2018 RY45_18640 edc7187b011c7b51f9031de5a099a8e4 387 Pfam PF06519 TolA C-terminal 289 382 6.6E-24 T 14-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 RY45_18640 edc7187b011c7b51f9031de5a099a8e4 387 TIGRFAM TIGR02794 tolA_full: protein TolA 11 230 2.7E-31 T 14-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 RY45_18640 edc7187b011c7b51f9031de5a099a8e4 387 TIGRFAM TIGR02794 tolA_full: protein TolA 142 385 1.0E-46 T 14-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 RY45_11785 0f056b9c8a4dd05eb12020629b1faa96 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.576 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RY45_11785 0f056b9c8a4dd05eb12020629b1faa96 109 PIRSF PIRSF004555 3 109 9.2E-40 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RY45_11785 0f056b9c8a4dd05eb12020629b1faa96 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 100 1.9E-35 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RY45_11785 0f056b9c8a4dd05eb12020629b1faa96 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 1.3E-38 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RY45_11785 0f056b9c8a4dd05eb12020629b1faa96 109 Gene3D G3DSA:3.30.1310.10 1 109 8.0E-48 T 14-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RY45_11785 0f056b9c8a4dd05eb12020629b1faa96 109 SUPERFAMILY SSF82607 11 103 1.7E-36 T 14-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SUPERFAMILY SSF55874 211 380 1.17E-44 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 269 383 2.8E-31 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Pfam PF00072 Response regulator receiver domain 404 517 2.1E-17 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Pfam PF00072 Response regulator receiver domain 548 660 1.5E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Gene3D G3DSA:3.40.50.12740 400 537 3.5E-27 T 14-10-2018 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SUPERFAMILY SSF52172 544 673 1.57E-39 T 14-10-2018 IPR011006 CheY-like superfamily RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Gene3D G3DSA:1.10.287.130 123 220 8.4E-30 T 14-10-2018 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Gene3D G3DSA:3.40.50.12330 538 602 1.7E-23 T 14-10-2018 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Pfam PF01627 Hpt domain 713 788 7.9E-10 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SUPERFAMILY SSF47226 643 778 4.97E-19 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SMART SM00448 546 660 5.5E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SMART SM00448 401 519 3.3E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SUPERFAMILY SSF52172 398 523 1.99E-27 T 14-10-2018 IPR011006 CheY-like superfamily RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Pfam PF00512 His Kinase A (phospho-acceptor) domain 157 222 8.3E-21 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 324 3.1E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 363 3.1E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 338 3.1E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 382 3.1E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SMART SM00387 269 385 6.5E-38 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SMART SM00388 157 222 1.5E-25 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Gene3D G3DSA:1.20.120.160 694 800 8.3E-18 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Gene3D G3DSA:3.40.50.2300 603 673 9.7E-15 T 14-10-2018 RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 Gene3D G3DSA:3.30.565.10 221 385 6.5E-53 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_02395 db6ee32b775e1e8059099cdb670b9b73 888 SUPERFAMILY SSF47384 142 223 1.31E-22 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_08030 fbb80e48061986e0033165611a25c4eb 262 SUPERFAMILY SSF54001 40 256 5.49E-73 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RY45_08030 fbb80e48061986e0033165611a25c4eb 262 Gene3D G3DSA:2.30.260.10 163 262 3.6E-22 T 14-10-2018 RY45_08030 fbb80e48061986e0033165611a25c4eb 262 Pfam PF07313 Protein of unknown function (DUF1460) 52 248 6.7E-75 T 14-10-2018 IPR010846 Protein of unknown function DUF1460 RY45_08030 fbb80e48061986e0033165611a25c4eb 262 Gene3D G3DSA:1.10.3670.10 44 162 1.8E-22 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 SUPERFAMILY SSF82866 783 1005 8.89E-45 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Gene3D G3DSA:3.30.2090.10 178 268 1.9E-283 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 SUPERFAMILY SSF82693 553 650 1.99E-17 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Gene3D G3DSA:3.30.70.1440 648 843 1.9E-283 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.8E-73 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Gene3D G3DSA:3.30.70.1430 40 794 1.9E-283 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 SUPERFAMILY SSF82714 182 263 4.05E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Gene3D G3DSA:3.30.70.1430 555 647 1.9E-283 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 SUPERFAMILY SSF82866 290 489 6.8E-46 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Gene3D G3DSA:1.20.1640.10 501 1001 1.9E-283 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 SUPERFAMILY SSF82714 701 783 2.09E-17 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Gene3D G3DSA:3.30.70.1320 134 325 1.9E-283 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 SUPERFAMILY SSF82693 41 130 1.92E-22 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Gene3D G3DSA:3.30.2090.10 698 786 1.9E-283 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Pfam PF00873 AcrB/AcrD/AcrF family 4 1004 7.3E-273 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 Gene3D G3DSA:1.20.1640.10 10 500 1.9E-283 T 14-10-2018 RY45_00100 0fc44d30a997d96c56241e697e139a81 1026 SUPERFAMILY SSF82693 136 323 3.66E-21 T 14-10-2018 RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 205 211 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 301 53.264 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 Pfam PF05175 Methyltransferase small domain 129 217 1.1E-16 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 SUPERFAMILY SSF53335 15 294 1.66E-54 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 PIRSF PIRSF037167 2 308 3.2E-146 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 Gene3D G3DSA:1.10.8.10 14 105 2.7E-5 T 14-10-2018 RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 Gene3D G3DSA:3.40.50.150 106 275 4.6E-48 T 14-10-2018 RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 2.2E-135 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RY45_11085 4f2470fd85c408e9c35ac1ec1bfe4b34 311 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 304 4.7E-92 T 14-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RY45_21495 1ccbbc140fcb8842674fb9d571633133 617 SMART SM00304 287 340 5.6E-5 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_21495 1ccbbc140fcb8842674fb9d571633133 617 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 400 583 7.2E-45 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_21495 1ccbbc140fcb8842674fb9d571633133 617 SMART SM01358 26 261 6.6E-34 T 14-10-2018 IPR032255 Helical bimodular sensor domain RY45_21495 1ccbbc140fcb8842674fb9d571633133 617 SUPERFAMILY SSF58104 308 617 2.09E-78 T 14-10-2018 RY45_21495 1ccbbc140fcb8842674fb9d571633133 617 Gene3D G3DSA:1.10.287.950 287 617 4.7E-77 T 14-10-2018 RY45_21495 1ccbbc140fcb8842674fb9d571633133 617 SMART SM00283 355 616 5.0E-78 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_10155 aac894959459b1b02dc840d9d0175742 371 PIRSF PIRSF016907 1 369 2.4E-127 T 14-10-2018 IPR011386 Putative ATP-NAD kinase RY45_10155 aac894959459b1b02dc840d9d0175742 371 Pfam PF01513 ATP-NAD kinase 4 365 9.9E-42 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 Gene3D G3DSA:1.20.1250.20 10 201 6.2E-37 T 14-10-2018 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 3.4E-9 T 14-10-2018 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 3.4E-9 T 14-10-2018 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 19 43 3.4E-9 T 14-10-2018 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 3.4E-9 T 14-10-2018 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 3.4E-9 T 14-10-2018 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 Gene3D G3DSA:1.20.1250.20 263 459 2.2E-15 T 14-10-2018 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 Pfam PF07690 Major Facilitator Superfamily 21 410 2.2E-49 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 SUPERFAMILY SSF103473 8 461 2.49E-62 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_19940 ebc152d3dd98f3a0b639d3b1b581618a 462 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 21 417 1.1E-70 T 14-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 Pfam PF00702 haloacid dehalogenase-like hydrolase 308 534 5.3E-30 T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 SUPERFAMILY SSF56784 300 564 9.8E-37 T 14-10-2018 IPR036412 HAD-like superfamily RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 Pfam PF00122 E1-E2 ATPase 113 291 1.1E-29 T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 SUPERFAMILY SSF81665 40 306 1.83E-9 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 SUPERFAMILY SSF81653 117 214 2.22E-19 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 SUPERFAMILY SSF81660 323 455 6.21E-28 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 Gene3D G3DSA:2.70.150.20 111 219 7.3E-25 T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 19 680 2.0E-283 T 14-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 314 320 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 520 539 3.7E-22 T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 543 555 3.7E-22 T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 467 477 3.7E-22 T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 312 326 3.7E-22 T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 161 175 3.7E-22 T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 ProSitePatterns PS01229 Hypothetical cof family signature 2. 520 542 - T 14-10-2018 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 17 683 37.875 T 14-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 Gene3D G3DSA:3.40.1110.10 326 450 7.7E-37 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 380 606 4.2E-42 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_00080 edf10c13eeab8a7d823e66b87d8f9d57 685 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 80 331 1.1E-29 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_08795 619359caf30a3612ceb2f87486088ba1 218 Gene3D G3DSA:1.10.286.10 1 84 1.3E-34 T 14-10-2018 RY45_08795 619359caf30a3612ceb2f87486088ba1 218 SUPERFAMILY SSF55620 23 216 5.26E-75 T 14-10-2018 RY45_08795 619359caf30a3612ceb2f87486088ba1 218 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 218 1.2E-81 T 14-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RY45_08795 619359caf30a3612ceb2f87486088ba1 218 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 14-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RY45_08795 619359caf30a3612ceb2f87486088ba1 218 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 34.932 T 14-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RY45_08795 619359caf30a3612ceb2f87486088ba1 218 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 14-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RY45_08795 619359caf30a3612ceb2f87486088ba1 218 Pfam PF01227 GTP cyclohydrolase I 38 215 2.1E-64 T 14-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RY45_08795 619359caf30a3612ceb2f87486088ba1 218 Gene3D G3DSA:3.30.1130.10 85 218 4.8E-53 T 14-10-2018 RY45_19930 e31841cf93affd96c3b53032cfc0f02b 169 Gene3D G3DSA:3.30.70.560 1 155 7.7E-38 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_19930 e31841cf93affd96c3b53032cfc0f02b 169 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 129 7.7E-29 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_19930 e31841cf93affd96c3b53032cfc0f02b 169 SUPERFAMILY SSF55083 1 153 9.29E-44 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_19930 e31841cf93affd96c3b53032cfc0f02b 169 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 129 1.9E-25 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_19930 e31841cf93affd96c3b53032cfc0f02b 169 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 85 96 - T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_08585 eddca4c5171c534fbba5f2de2c3164be 342 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 19 252 2.1E-61 T 14-10-2018 IPR018642 Protein of unknown function DUF2066 RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 SUPERFAMILY SSF52540 20 222 2.28E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 Gene3D G3DSA:3.40.1140.10 1382 1467 2.0E-37 T 14-10-2018 RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 Gene3D G3DSA:1.20.58.850 582 848 2.0E-102 T 14-10-2018 RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 Pfam PF04310 MukB N-terminal 2 225 9.2E-122 T 14-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 Gene3D G3DSA:3.40.1140.10 1 225 4.3E-92 T 14-10-2018 RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 Gene3D G3DSA:1.20.1060.30 666 777 2.0E-102 T 14-10-2018 RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 Gene3D G3DSA:1.20.58.850 619 829 2.0E-102 T 14-10-2018 RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 SUPERFAMILY SSF52540 19 1431 1.11E-5 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 Pfam PF16330 MukB hinge domain 644 809 1.7E-66 T 14-10-2018 IPR032520 MukB, hinge domain RY45_10980 e1f3986620db76d5e51a023bbef5b725 1475 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1423 8.6E-15 T 14-10-2018 RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 Gene3D G3DSA:3.40.1390.10 1 98 1.3E-35 T 14-10-2018 RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 8 325 34.99 T 14-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 144 178 8.9E-5 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 6.1E-9 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 221 253 1.8E-4 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 Gene3D G3DSA:2.160.10.10 99 307 1.4E-62 T 14-10-2018 RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 1.7E-24 T 14-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 SUPERFAMILY SSF51161 31 315 2.83E-86 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 7 328 3.2E-117 T 14-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 RY45_06345 89dd82f95073e5ce5c71691db67a12be 339 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 105 133 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_00905 209e78666a917f53ed8ea3be168dbd40 513 SUPERFAMILY SSF47233 99 227 3.14E-46 T 14-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily RY45_00905 209e78666a917f53ed8ea3be168dbd40 513 Gene3D G3DSA:1.20.120.260 96 228 7.6E-48 T 14-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily RY45_00905 209e78666a917f53ed8ea3be168dbd40 513 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 177 195 3.2E-20 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 RY45_00905 209e78666a917f53ed8ea3be168dbd40 513 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 41 58 3.2E-20 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 RY45_00905 209e78666a917f53ed8ea3be168dbd40 513 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 211 228 3.2E-20 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 RY45_00905 209e78666a917f53ed8ea3be168dbd40 513 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 25 38 3.2E-20 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 RY45_00905 209e78666a917f53ed8ea3be168dbd40 513 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 128 145 3.2E-20 T 14-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 RY45_00905 209e78666a917f53ed8ea3be168dbd40 513 Pfam PF03545 Yersinia virulence determinant (YopE) 129 197 1.8E-23 T 14-10-2018 IPR014773 Virulence factor YopE, GAP domain RY45_08965 44e3c6885072df3b4a3459067f8af383 282 SUPERFAMILY SSF103481 184 275 4.97E-10 T 14-10-2018 RY45_08965 44e3c6885072df3b4a3459067f8af383 282 Pfam PF00892 EamA-like transporter family 143 272 1.2E-11 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_08965 44e3c6885072df3b4a3459067f8af383 282 Pfam PF00892 EamA-like transporter family 7 133 4.1E-8 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_08965 44e3c6885072df3b4a3459067f8af383 282 SUPERFAMILY SSF103481 41 137 2.35E-8 T 14-10-2018 RY45_07585 1c251bfeda0c4e160ebfb7a393508412 445 Pfam PF02447 GntP family permease 10 443 5.7E-156 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RY45_07585 1c251bfeda0c4e160ebfb7a393508412 445 PIRSF PIRSF002746 2 445 4.9E-142 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RY45_07585 1c251bfeda0c4e160ebfb7a393508412 445 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 7 445 1.1E-161 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RY45_12145 82c4041e632ec32f6045f8c9489a34ea 460 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 457 1.4E-214 T 14-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RY45_12145 82c4041e632ec32f6045f8c9489a34ea 460 Pfam PF03315 Serine dehydratase beta chain 3 155 3.2E-57 T 14-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RY45_12145 82c4041e632ec32f6045f8c9489a34ea 460 SUPERFAMILY SSF143548 16 156 9.15E-45 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RY45_12145 82c4041e632ec32f6045f8c9489a34ea 460 Gene3D G3DSA:3.30.1330.90 10 159 1.8E-52 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RY45_12145 82c4041e632ec32f6045f8c9489a34ea 460 Pfam PF03313 Serine dehydratase alpha chain 190 454 4.6E-100 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit RY45_15980 a9347223cdfc32c7ed158ceaf2bfe3d0 330 Pfam PF00005 ABC transporter 35 191 1.4E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_15980 a9347223cdfc32c7ed158ceaf2bfe3d0 330 SMART SM00382 44 240 1.2E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15980 a9347223cdfc32c7ed158ceaf2bfe3d0 330 SUPERFAMILY SSF52540 10 261 6.89E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15980 a9347223cdfc32c7ed158ceaf2bfe3d0 330 Gene3D G3DSA:3.40.50.300 8 330 3.8E-82 T 14-10-2018 RY45_15980 a9347223cdfc32c7ed158ceaf2bfe3d0 330 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_15980 a9347223cdfc32c7ed158ceaf2bfe3d0 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 328 1.7E-21 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_15980 a9347223cdfc32c7ed158ceaf2bfe3d0 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 242 308 7.4E-17 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_01645 9d5d333098fdf5ac466b7bb340023bc4 457 SMART SM00729 52 272 8.3E-53 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_01645 9d5d333098fdf5ac466b7bb340023bc4 457 Pfam PF04055 Radical SAM superfamily 57 228 1.2E-20 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_01645 9d5d333098fdf5ac466b7bb340023bc4 457 SUPERFAMILY SSF102114 6 444 1.18E-138 T 14-10-2018 RY45_01645 9d5d333098fdf5ac466b7bb340023bc4 457 PIRSF PIRSF000167 3 454 9.0E-169 T 14-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 RY45_01645 9d5d333098fdf5ac466b7bb340023bc4 457 Gene3D G3DSA:3.80.30.20 1 363 5.7E-133 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RY45_01645 9d5d333098fdf5ac466b7bb340023bc4 457 Pfam PF06969 HemN C-terminal domain 363 427 1.6E-8 T 14-10-2018 IPR010723 HemN, C-terminal RY45_01645 9d5d333098fdf5ac466b7bb340023bc4 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 457 5.0E-205 T 14-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 RY45_01645 9d5d333098fdf5ac466b7bb340023bc4 457 Gene3D G3DSA:1.10.10.920 364 457 5.5E-34 T 14-10-2018 RY45_15570 6c7c28911cda4c307a78674449f0c470 424 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 92 367 1.8E-22 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_15570 6c7c28911cda4c307a78674449f0c470 424 Gene3D G3DSA:3.40.50.1100 83 392 6.3E-136 T 14-10-2018 RY45_15570 6c7c28911cda4c307a78674449f0c470 424 Gene3D G3DSA:3.90.1380.10 1 79 2.9E-27 T 14-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily RY45_15570 6c7c28911cda4c307a78674449f0c470 424 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 95 109 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RY45_15570 6c7c28911cda4c307a78674449f0c470 424 Gene3D G3DSA:3.40.50.1100 101 399 6.3E-136 T 14-10-2018 RY45_15570 6c7c28911cda4c307a78674449f0c470 424 TIGRFAM TIGR00260 thrC: threonine synthase 52 389 1.5E-111 T 14-10-2018 IPR004450 Threonine synthase-like RY45_15570 6c7c28911cda4c307a78674449f0c470 424 Pfam PF14821 Threonine synthase N terminus 7 78 1.4E-6 T 14-10-2018 IPR029144 Threonine synthase, N-terminal RY45_15570 6c7c28911cda4c307a78674449f0c470 424 SUPERFAMILY SSF53686 1 423 8.91E-130 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 243 9.0E-81 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 PIRSF PIRSF000159 1 1181 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Gene3D G3DSA:3.40.50.920 255 413 4.6E-55 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1173 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 SUPERFAMILY SSF54862 670 842 3.35E-23 T 14-10-2018 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 SUPERFAMILY SSF53323 423 673 3.4E-74 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 SUPERFAMILY SSF52922 256 408 8.57E-43 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Gene3D G3DSA:3.40.920.10 422 628 1.3E-74 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 SMART SM00890 627 684 1.6E-30 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 350 7.0E-14 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Gene3D G3DSA:4.10.780.10 637 673 3.2E-6 T 14-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 431 612 4.9E-32 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Gene3D G3DSA:3.40.50.970 799 1176 1.9E-154 T 14-10-2018 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 SUPERFAMILY SSF52518 801 1174 1.77E-120 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Gene3D G3DSA:3.40.50.970 1 254 1.5E-106 T 14-10-2018 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Pfam PF12838 4Fe-4S dicluster domain 694 762 1.8E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Gene3D G3DSA:3.30.70.20 674 796 1.4E-38 T 14-10-2018 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Pfam PF10371 Domain of unknown function 630 683 7.2E-24 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 962 1074 7.8E-10 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 SUPERFAMILY SSF52518 2 254 7.46E-75 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 750 761 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_16370 00828ce4b87597ce41f418bb6746f35c 1181 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 694 705 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_12850 bba2f61ce3f21ad1b70f7cb59051eb11 520 Pfam PF13193 AMP-binding enzyme C-terminal domain 436 510 2.0E-10 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_12850 bba2f61ce3f21ad1b70f7cb59051eb11 520 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 66 452 2.0E-102 T 14-10-2018 IPR010071 Amino acid adenylation domain RY45_12850 bba2f61ce3f21ad1b70f7cb59051eb11 520 Gene3D G3DSA:3.40.50.12780 48 421 9.2E-96 T 14-10-2018 RY45_12850 bba2f61ce3f21ad1b70f7cb59051eb11 520 Gene3D G3DSA:3.30.300.30 422 520 9.0E-29 T 14-10-2018 RY45_12850 bba2f61ce3f21ad1b70f7cb59051eb11 520 SUPERFAMILY SSF56801 61 517 1.31E-120 T 14-10-2018 RY45_12850 bba2f61ce3f21ad1b70f7cb59051eb11 520 Pfam PF00501 AMP-binding enzyme 61 428 2.1E-74 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_12850 bba2f61ce3f21ad1b70f7cb59051eb11 520 ProSitePatterns PS00455 Putative AMP-binding domain signature. 178 189 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_18185 2f3108d632d552718d9a4a117a55b574 285 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 24 84 5.3E-9 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RY45_18185 2f3108d632d552718d9a4a117a55b574 285 Gene3D G3DSA:3.40.50.620 1 179 9.9E-79 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_18185 2f3108d632d552718d9a4a117a55b574 285 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.75 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RY45_18185 2f3108d632d552718d9a4a117a55b574 285 SUPERFAMILY SSF52374 1 282 3.49E-105 T 14-10-2018 RY45_18185 2f3108d632d552718d9a4a117a55b574 285 Gene3D G3DSA:3.30.1300.10 180 283 5.0E-30 T 14-10-2018 RY45_18185 2f3108d632d552718d9a4a117a55b574 285 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 2 280 2.8E-107 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RY45_18185 2f3108d632d552718d9a4a117a55b574 285 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 1.3E-101 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RY45_16500 2cf42579b01da190ba276452a81444c5 286 SMART SM00849 39 221 4.6E-12 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_16500 2cf42579b01da190ba276452a81444c5 286 SUPERFAMILY SSF56281 24 245 1.32E-33 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_16500 2cf42579b01da190ba276452a81444c5 286 Gene3D G3DSA:3.60.15.10 25 256 9.2E-22 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_06670 858ac6bf4de2922637086cd028d31f52 384 Gene3D G3DSA:3.40.50.10540 3 355 7.6E-133 T 14-10-2018 IPR023606 CoA-transferase family III domain superfamily RY45_06670 858ac6bf4de2922637086cd028d31f52 384 SUPERFAMILY SSF89796 1 382 4.32E-130 T 14-10-2018 IPR023606 CoA-transferase family III domain superfamily RY45_06670 858ac6bf4de2922637086cd028d31f52 384 Gene3D G3DSA:3.30.1540.10 228 319 7.6E-133 T 14-10-2018 RY45_06670 858ac6bf4de2922637086cd028d31f52 384 Pfam PF02515 CoA-transferase family III 4 372 9.1E-132 T 14-10-2018 IPR003673 CoA-transferase family III GO:0003824 RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 SMART SM00564 155 187 0.0036 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 SMART SM00564 252 283 15.0 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 SMART SM00564 66 97 3.7E-5 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 SMART SM00564 290 321 1.7 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 SMART SM00564 331 362 0.11 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 SMART SM00564 116 147 1.1E-4 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 393 38.186 T 14-10-2018 IPR017687 Outer membrane protein assembly factor BamB RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 Pfam PF13360 PQQ-like domain 79 319 9.6E-54 T 14-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 SUPERFAMILY SSF50998 35 384 8.5E-79 T 14-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 Gene3D G3DSA:2.130.10.10 22 392 2.2E-99 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 8 392 5.5E-132 T 14-10-2018 IPR017687 Outer membrane protein assembly factor BamB RY45_09605 3950e444de75e1041608a3a5fd0fafe4 394 Pfam PF13570 PQQ-like domain 362 391 0.0018 T 14-10-2018 IPR025666 Pyrrolo-quinoline quinone-like domain RY45_20120 aad2450f9192248c39a1221504df44a6 427 Pfam PF02875 Mur ligase family, glutamate ligase domain 290 360 2.8E-8 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RY45_20120 aad2450f9192248c39a1221504df44a6 427 SUPERFAMILY SSF51984 2 86 1.57E-17 T 14-10-2018 RY45_20120 aad2450f9192248c39a1221504df44a6 427 Gene3D G3DSA:3.40.50.720 1 85 2.7E-18 T 14-10-2018 RY45_20120 aad2450f9192248c39a1221504df44a6 427 SUPERFAMILY SSF53623 87 286 2.09E-52 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_20120 aad2450f9192248c39a1221504df44a6 427 SUPERFAMILY SSF53244 288 427 6.96E-43 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_20120 aad2450f9192248c39a1221504df44a6 427 Gene3D G3DSA:3.90.190.20 289 424 3.4E-40 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_20120 aad2450f9192248c39a1221504df44a6 427 Pfam PF08245 Mur ligase middle domain 102 269 6.5E-25 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RY45_20120 aad2450f9192248c39a1221504df44a6 427 Gene3D G3DSA:3.40.1190.10 86 288 2.8E-66 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_20120 aad2450f9192248c39a1221504df44a6 427 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 2 425 1.4E-123 T 14-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RY45_20120 aad2450f9192248c39a1221504df44a6 427 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 1 427 32.665 T 14-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 2.8E-21 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 SUPERFAMILY SSF46785 4 72 3.98E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 SMART SM00866 89 226 4.0E-34 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 5 231 2.0E-85 T 14-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 Pfam PF07702 UTRA domain 89 226 7.7E-33 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 SMART SM00345 9 68 3.4E-21 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 Gene3D G3DSA:3.40.1410.10 86 222 8.8E-33 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.6E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.6E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 SUPERFAMILY SSF64288 56 229 1.73E-41 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_02165 79b262b8c9c11e445ad1779425259c4c 234 Gene3D G3DSA:1.10.10.10 2 69 5.9E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_11950 7da4a3602e5e6f5150680ebb7288e8c2 292 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 182 281 4.9E-25 T 14-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RY45_11950 7da4a3602e5e6f5150680ebb7288e8c2 292 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 6 170 1.4E-51 T 14-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RY45_11950 7da4a3602e5e6f5150680ebb7288e8c2 292 Gene3D G3DSA:3.30.465.10 4 173 4.3E-51 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_11950 7da4a3602e5e6f5150680ebb7288e8c2 292 SUPERFAMILY SSF56176 5 171 5.32E-51 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_11950 7da4a3602e5e6f5150680ebb7288e8c2 292 SMART SM01092 181 283 2.4E-26 T 14-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RY45_11950 7da4a3602e5e6f5150680ebb7288e8c2 292 SUPERFAMILY SSF55447 181 286 2.35E-26 T 14-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RY45_11950 7da4a3602e5e6f5150680ebb7288e8c2 292 Gene3D G3DSA:3.30.390.50 179 286 3.4E-25 T 14-10-2018 RY45_14950 1e4459c14243ba4d81ed6ca745e44367 363 SUPERFAMILY SSF52518 3 350 4.47E-94 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_14950 1e4459c14243ba4d81ed6ca745e44367 363 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 8 349 6.1E-136 T 14-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RY45_14950 1e4459c14243ba4d81ed6ca745e44367 363 Pfam PF00676 Dehydrogenase E1 component 35 327 1.8E-78 T 14-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RY45_14950 1e4459c14243ba4d81ed6ca745e44367 363 Gene3D G3DSA:3.40.50.970 1 350 2.9E-103 T 14-10-2018 RY45_10465 4c06c90c128127e3610949c597406037 714 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 45 - T 14-10-2018 IPR010916 TonB box, conserved site RY45_10465 4c06c90c128127e3610949c597406037 714 Gene3D G3DSA:2.40.170.20 172 714 1.4E-129 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_10465 4c06c90c128127e3610949c597406037 714 Gene3D G3DSA:2.170.130.10 38 171 1.3E-32 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_10465 4c06c90c128127e3610949c597406037 714 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 160 5.9E-19 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_10465 4c06c90c128127e3610949c597406037 714 SUPERFAMILY SSF56935 26 714 1.13E-127 T 14-10-2018 RY45_10465 4c06c90c128127e3610949c597406037 714 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 60 714 1.1E-114 T 14-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RY45_10465 4c06c90c128127e3610949c597406037 714 Pfam PF00593 TonB dependent receptor 231 712 4.7E-54 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_20350 c13489d91f941f4eb17aff69bf823048 89 PIRSF PIRSF004669 1 89 1.7E-24 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_20350 c13489d91f941f4eb17aff69bf823048 89 Pfam PF01313 Bacterial export proteins, family 3 8 77 2.7E-22 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_20350 c13489d91f941f4eb17aff69bf823048 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 6.8E-15 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_20350 c13489d91f941f4eb17aff69bf823048 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 6.8E-15 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_20350 c13489d91f941f4eb17aff69bf823048 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 6.8E-15 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 Gene3D G3DSA:3.40.190.10 26 329 2.3E-131 T 14-10-2018 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 Pfam PF13416 Bacterial extracellular solute-binding protein 40 314 1.9E-29 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PIRSF PIRSF019574 2 361 7.0E-138 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 Gene3D G3DSA:3.40.190.10 129 355 2.3E-131 T 14-10-2018 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 SUPERFAMILY SSF53850 24 360 4.51E-96 T 14-10-2018 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 28 44 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 305 331 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 71 85 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 173 192 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 260 279 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 210 229 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 44 65 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 120 136 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 150 164 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21565 fd73fa9ae9ae8fe86325b1ac9dc90651 361 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 87 100 1.2E-62 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21980 a2b6785321b4ac90e6d94d0eb09f99ee 396 Pfam PF00155 Aminotransferase class I and II 42 385 1.5E-73 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_21980 a2b6785321b4ac90e6d94d0eb09f99ee 396 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 396 1.0E-213 T 14-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 RY45_21980 a2b6785321b4ac90e6d94d0eb09f99ee 396 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 240 249 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RY45_21980 a2b6785321b4ac90e6d94d0eb09f99ee 396 Gene3D G3DSA:3.40.640.10 57 295 4.4E-137 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_21980 a2b6785321b4ac90e6d94d0eb09f99ee 396 Gene3D G3DSA:3.90.1150.10 36 386 4.4E-137 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_21980 a2b6785321b4ac90e6d94d0eb09f99ee 396 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 394 54.384 T 14-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 RY45_21980 a2b6785321b4ac90e6d94d0eb09f99ee 396 SUPERFAMILY SSF53383 5 394 6.97E-123 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_22155 eff847427cede6fba4600a42d1a79557 260 Gene3D G3DSA:1.20.120.220 84 259 2.7E-67 T 14-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22155 eff847427cede6fba4600a42d1a79557 260 ProSitePatterns PS00449 ATP synthase a subunit signature. 194 203 - T 14-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22155 eff847427cede6fba4600a42d1a79557 260 PRINTS PR00123 ATP synthase A subunit signature 93 109 1.3E-14 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22155 eff847427cede6fba4600a42d1a79557 260 PRINTS PR00123 ATP synthase A subunit signature 191 213 1.3E-14 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22155 eff847427cede6fba4600a42d1a79557 260 PRINTS PR00123 ATP synthase A subunit signature 239 254 1.3E-14 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22155 eff847427cede6fba4600a42d1a79557 260 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 259 15.994 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22155 eff847427cede6fba4600a42d1a79557 260 Pfam PF00119 ATP synthase A chain 35 253 4.2E-56 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22155 eff847427cede6fba4600a42d1a79557 260 SUPERFAMILY SSF81336 85 253 5.23E-48 T 14-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22155 eff847427cede6fba4600a42d1a79557 260 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 24 254 3.4E-42 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_02440 f7b39790da9ce44590d935185ebd3264 273 Gene3D G3DSA:1.10.3210.10 2 269 7.6E-65 T 14-10-2018 RY45_02440 f7b39790da9ce44590d935185ebd3264 273 Pfam PF08668 HDOD domain 14 205 1.6E-50 T 14-10-2018 IPR013976 Metal-dependent hydrolase HDOD RY45_02440 f7b39790da9ce44590d935185ebd3264 273 SUPERFAMILY SSF109604 4 265 7.18E-62 T 14-10-2018 RY45_16235 c2f9e69286fcd511857f368c18b423df 127 PIRSF PIRSF005610 1 122 4.5E-9 T 14-10-2018 IPR007360 Invasion gene expression up-regulator, SirB RY45_16235 c2f9e69286fcd511857f368c18b423df 127 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 123 1.5E-30 T 14-10-2018 IPR007360 Invasion gene expression up-regulator, SirB RY45_08595 8038747fc874fafdeaf5538c930eaf65 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 258 436 4.4E-89 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RY45_08595 8038747fc874fafdeaf5538c930eaf65 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 257 3.8E-111 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RY45_08595 8038747fc874fafdeaf5538c930eaf65 437 Pfam PF00463 Isocitrate lyase family 258 436 4.0E-50 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RY45_08595 8038747fc874fafdeaf5538c930eaf65 437 Pfam PF00463 Isocitrate lyase family 11 257 3.6E-60 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RY45_08595 8038747fc874fafdeaf5538c930eaf65 437 PIRSF PIRSF001362 1 437 1.0E-224 T 14-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RY45_08595 8038747fc874fafdeaf5538c930eaf65 437 SUPERFAMILY SSF51621 7 436 2.96E-153 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_08595 8038747fc874fafdeaf5538c930eaf65 437 ProSitePatterns PS00161 Isocitrate lyase signature. 195 200 - T 14-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 RY45_08595 8038747fc874fafdeaf5538c930eaf65 437 Gene3D G3DSA:3.20.20.60 1 419 3.8E-180 T 14-10-2018 RY45_09455 0ad12e61d90dc1d347863312067b8b32 188 Pfam PF00578 AhpC/TSA family 7 133 3.6E-37 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_09455 0ad12e61d90dc1d347863312067b8b32 188 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 157 182 8.5E-7 T 14-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_09455 0ad12e61d90dc1d347863312067b8b32 188 Gene3D G3DSA:3.40.30.10 1 187 3.1E-65 T 14-10-2018 RY45_09455 0ad12e61d90dc1d347863312067b8b32 188 SUPERFAMILY SSF52833 5 187 3.98E-59 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_09455 0ad12e61d90dc1d347863312067b8b32 188 TIGRFAM TIGR03137 AhpC: peroxiredoxin 4 188 1.1E-105 T 14-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RY45_09455 0ad12e61d90dc1d347863312067b8b32 188 PIRSF PIRSF000239 1 188 2.3E-55 T 14-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_07480 dd4b213c12926942c8ce935bd857ce33 468 Pfam PF07690 Major Facilitator Superfamily 35 390 8.0E-33 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_07480 dd4b213c12926942c8ce935bd857ce33 468 Gene3D G3DSA:1.20.1250.20 29 230 1.2E-33 T 14-10-2018 RY45_07480 dd4b213c12926942c8ce935bd857ce33 468 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 426 5.1E-133 T 14-10-2018 RY45_07480 dd4b213c12926942c8ce935bd857ce33 468 SUPERFAMILY SSF103473 18 450 9.29E-57 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_07480 dd4b213c12926942c8ce935bd857ce33 468 PIRSF PIRSF002808 11 460 4.7E-100 T 14-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RY45_07480 dd4b213c12926942c8ce935bd857ce33 468 Gene3D G3DSA:1.20.1250.20 246 460 2.4E-34 T 14-10-2018 RY45_20685 f52262fca070702a76d5fe9e1c2271d5 252 Gene3D G3DSA:3.40.190.10 108 212 2.3E-21 T 14-10-2018 RY45_20685 f52262fca070702a76d5fe9e1c2271d5 252 Gene3D G3DSA:3.40.190.10 31 248 2.3E-21 T 14-10-2018 RY45_20685 f52262fca070702a76d5fe9e1c2271d5 252 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 249 4.2E-20 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_20685 f52262fca070702a76d5fe9e1c2271d5 252 SUPERFAMILY SSF53850 29 249 7.21E-31 T 14-10-2018 RY45_20685 f52262fca070702a76d5fe9e1c2271d5 252 SMART SM00062 28 252 4.5E-6 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_21355 3c337d85556d8a2a9cf72b35b1b2849b 215 SUPERFAMILY SSF52540 1 212 7.94E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21355 3c337d85556d8a2a9cf72b35b1b2849b 215 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 184 2.8E-10 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RY45_21355 3c337d85556d8a2a9cf72b35b1b2849b 215 PIRSF PIRSF009320 1 214 7.6E-34 T 14-10-2018 RY45_21355 3c337d85556d8a2a9cf72b35b1b2849b 215 Gene3D G3DSA:3.40.50.300 1 214 1.5E-42 T 14-10-2018 RY45_08470 fe30e0299849d88a63d30d214107ac8f 638 Pfam PF01464 Transglycosylase SLT domain 479 591 9.7E-31 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_08470 fe30e0299849d88a63d30d214107ac8f 638 Gene3D G3DSA:1.10.1240.20 400 467 4.1E-15 T 14-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 RY45_08470 fe30e0299849d88a63d30d214107ac8f 638 SUPERFAMILY SSF48435 28 472 3.53E-124 T 14-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RY45_08470 fe30e0299849d88a63d30d214107ac8f 638 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 496 524 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RY45_08470 fe30e0299849d88a63d30d214107ac8f 638 Pfam PF14718 Soluble lytic murein transglycosylase L domain 403 467 4.6E-18 T 14-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 RY45_08470 fe30e0299849d88a63d30d214107ac8f 638 Gene3D G3DSA:1.25.20.10 25 381 1.2E-108 T 14-10-2018 RY45_08470 fe30e0299849d88a63d30d214107ac8f 638 SUPERFAMILY SSF53955 474 633 2.49E-48 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_08470 fe30e0299849d88a63d30d214107ac8f 638 Gene3D G3DSA:1.10.530.10 469 638 6.8E-52 T 14-10-2018 RY45_17365 c76e378ed0aae1264e2fd9bb9a988ff7 267 Pfam PF02567 Phenazine biosynthesis-like protein 9 260 2.4E-58 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RY45_17365 c76e378ed0aae1264e2fd9bb9a988ff7 267 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 263 1.1E-33 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RY45_17365 c76e378ed0aae1264e2fd9bb9a988ff7 267 SUPERFAMILY SSF54506 5 263 1.13E-75 T 14-10-2018 RY45_17365 c76e378ed0aae1264e2fd9bb9a988ff7 267 PIRSF PIRSF016184 1 264 5.2E-51 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RY45_17365 c76e378ed0aae1264e2fd9bb9a988ff7 267 Gene3D G3DSA:3.10.310.10 119 252 1.6E-89 T 14-10-2018 RY45_17365 c76e378ed0aae1264e2fd9bb9a988ff7 267 Gene3D G3DSA:3.10.310.10 7 256 1.6E-89 T 14-10-2018 RY45_09815 f1756922b80630800ea284d35265fa79 402 Gene3D G3DSA:1.20.1250.20 7 387 2.0E-46 T 14-10-2018 RY45_09815 f1756922b80630800ea284d35265fa79 402 Pfam PF07690 Major Facilitator Superfamily 16 353 3.1E-36 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_09815 f1756922b80630800ea284d35265fa79 402 SUPERFAMILY SSF103473 6 389 1.96E-53 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_00725 84bed88cf003fa37972ae9391f034abb 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 1.9E-55 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 1.9E-55 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 1.9E-55 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 1.9E-55 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 1.9E-55 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 1.9E-55 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 14-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 Gene3D G3DSA:3.20.20.70 2 337 3.0E-149 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 9.3E-141 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 SMART SM01004 9 333 1.9E-247 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 PIRSF PIRSF001415 2 336 2.5E-150 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RY45_00725 84bed88cf003fa37972ae9391f034abb 339 SUPERFAMILY SSF51569 8 335 1.61E-144 T 14-10-2018 RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 SUPERFAMILY SSF51735 2 250 2.37E-56 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 9.6E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 9.6E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 9.6E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 9.6E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 9.6E-20 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 Pfam PF00106 short chain dehydrogenase 4 189 2.1E-42 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05755 87365eaf2d70d1078ba0c3b730a67ba4 275 Gene3D G3DSA:3.40.50.720 3 255 2.1E-59 T 14-10-2018 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 Gene3D G3DSA:3.50.50.60 9 416 3.4E-172 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 2.0E-35 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 SUPERFAMILY SSF46977 452 588 3.14E-47 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 4.9E-240 T 14-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 Gene3D G3DSA:3.90.700.10 246 350 3.4E-172 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 PIRSF PIRSF000171 1 580 9.1E-49 T 14-10-2018 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 SUPERFAMILY SSF56425 236 356 8.67E-43 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 14-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 Gene3D G3DSA:1.20.58.100 431 547 5.8E-39 T 14-10-2018 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 380 395 9.2E-6 T 14-10-2018 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 9.2E-6 T 14-10-2018 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 Gene3D G3DSA:4.10.80.40 548 588 5.8E-25 T 14-10-2018 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 3.6E-274 T 14-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 SUPERFAMILY SSF51905 4 432 5.71E-75 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10325 24f7d38dcb64169ce05bb058f51c7c00 588 Pfam PF00890 FAD binding domain 9 405 4.8E-121 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 Gene3D G3DSA:3.40.50.1000 488 746 1.8E-65 T 14-10-2018 IPR023214 HAD superfamily RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 SUPERFAMILY SSF81665 275 778 4.97E-10 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 Gene3D G3DSA:3.40.1110.10 518 627 1.8E-65 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 Pfam PF00702 haloacid dehalogenase-like hydrolase 505 708 6.3E-38 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 SUPERFAMILY SSF56784 506 795 1.28E-48 T 14-10-2018 IPR036412 HAD-like superfamily RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 359 373 1.1E-21 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 695 714 1.1E-21 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 642 652 1.1E-21 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 507 521 1.1E-21 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 718 730 1.1E-21 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 SUPERFAMILY SSF55008 90 164 2.75E-18 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 280 798 4.5E-114 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 509 515 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 248 797 3.0E-158 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 Gene3D G3DSA:2.70.150.20 304 413 6.1E-30 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 Gene3D G3DSA:3.30.70.100 92 175 4.2E-15 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 Pfam PF00122 E1-E2 ATPase 310 486 3.0E-45 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 282 771 5.2E-69 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 230 797 2.3E-142 T 14-10-2018 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 SUPERFAMILY SSF81653 312 408 6.54E-22 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 Pfam PF00403 Heavy-metal-associated domain 97 156 8.2E-10 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RY45_11365 8fc0d7fabbb62ebf0c1eb8ec9eedaed5 799 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 4 84 8.8E-25 T 14-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 SUPERFAMILY SSF52540 129 370 2.96E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 SUPERFAMILY SSF52172 1 171 4.72E-6 T 14-10-2018 IPR011006 CheY-like superfamily RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 215 230 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 450 470 4.9E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 450 4.9E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 Pfam PF00158 Sigma-54 interaction domain 129 296 4.5E-72 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 SMART SM00382 149 293 1.6E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 Pfam PF02954 Bacterial regulatory protein, Fis family 427 467 5.3E-15 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 SUPERFAMILY SSF46689 341 469 3.54E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 Pfam PF06490 Flagellar regulatory protein FleQ 6 108 3.1E-16 T 14-10-2018 IPR010518 Flagellar regulatory FleQ RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 Gene3D G3DSA:3.40.50.300 116 300 7.4E-67 T 14-10-2018 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 Gene3D G3DSA:1.10.10.60 404 471 2.1E-14 T 14-10-2018 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 153 166 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 Gene3D G3DSA:1.10.8.60 301 376 4.1E-25 T 14-10-2018 RY45_08550 e6c7f83fc18e7a317ffaa4faf465c4a3 473 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 341 350 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_02970 222dd763a49d5adcf73c95f36738cfdb 420 Pfam PF13701 Transposase DDE domain group 1 4 418 1.7E-54 T 14-10-2018 IPR025668 Transposase DDE domain RY45_02970 222dd763a49d5adcf73c95f36738cfdb 420 SUPERFAMILY SSF53098 86 367 2.81E-7 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_02895 61f5a3281e81665b573f87ed34a5e11c 101 SUPERFAMILY SSF47413 7 86 1.0E-18 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_02895 61f5a3281e81665b573f87ed34a5e11c 101 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 2 82 2.3E-26 T 14-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 RY45_02895 61f5a3281e81665b573f87ed34a5e11c 101 Gene3D G3DSA:1.10.260.40 1 81 5.8E-24 T 14-10-2018 RY45_02895 61f5a3281e81665b573f87ed34a5e11c 101 Pfam PF01381 Helix-turn-helix 18 57 6.4E-8 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_16790 41b0dbbe37fd3cf1bd8e1d2a68521ed4 321 Pfam PF03330 Lytic transglycolase 83 171 3.8E-18 T 14-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain RY45_16790 41b0dbbe37fd3cf1bd8e1d2a68521ed4 321 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 11 174 21.663 T 14-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 RY45_16790 41b0dbbe37fd3cf1bd8e1d2a68521ed4 321 Pfam PF05036 Sporulation related domain 254 318 1.4E-5 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 RY45_16790 41b0dbbe37fd3cf1bd8e1d2a68521ed4 321 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 84 178 1.8E-37 T 14-10-2018 IPR012997 Rare lipoprotein A RY45_16790 41b0dbbe37fd3cf1bd8e1d2a68521ed4 321 Gene3D G3DSA:2.40.40.10 81 175 7.7E-29 T 14-10-2018 IPR036908 RlpA-like domain superfamily RY45_16790 41b0dbbe37fd3cf1bd8e1d2a68521ed4 321 SUPERFAMILY SSF50685 84 171 6.17E-7 T 14-10-2018 IPR036908 RlpA-like domain superfamily RY45_16790 41b0dbbe37fd3cf1bd8e1d2a68521ed4 321 SUPERFAMILY SSF110997 249 320 8.24E-8 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 SUPERFAMILY SSF46565 207 270 2.54E-17 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 Gene3D G3DSA:1.10.287.110 189 274 7.0E-17 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 SMART SM00271 209 274 4.6E-18 T 14-10-2018 IPR001623 DnaJ domain RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 Gene3D G3DSA:1.10.3680.10 36 184 1.1E-24 T 14-10-2018 IPR029024 TerB-like RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 SUPERFAMILY SSF158682 9 224 1.96E-32 T 14-10-2018 IPR029024 TerB-like RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 Pfam PF05099 Tellurite resistance protein TerB 36 169 2.3E-16 T 14-10-2018 IPR007791 Co-chaperone DjlA, N-terminal RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 Pfam PF00226 DnaJ domain 210 269 2.1E-12 T 14-10-2018 IPR001623 DnaJ domain RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 275 39.64 T 14-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 PRINTS PR00625 DnaJ domain signature 254 274 7.4E-10 T 14-10-2018 IPR001623 DnaJ domain RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 PRINTS PR00625 DnaJ domain signature 212 230 7.4E-10 T 14-10-2018 IPR001623 DnaJ domain RY45_05240 e6197ff608d2a66e4a8bf82df1b5f28b 276 PRINTS PR00625 DnaJ domain signature 230 245 7.4E-10 T 14-10-2018 IPR001623 DnaJ domain RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 Gene3D G3DSA:3.30.70.3070 170 201 3.9E-12 T 14-10-2018 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 Gene3D G3DSA:1.20.1330.10 58 163 5.6E-52 T 14-10-2018 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 Gene3D G3DSA:1.20.1330.10 202 246 3.9E-12 T 14-10-2018 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 PRINTS PR00207 Flagellin signature 37 54 5.2E-26 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 PRINTS PR00207 Flagellin signature 76 95 5.2E-26 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 PRINTS PR00207 Flagellin signature 111 134 5.2E-26 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 Pfam PF00700 Bacterial flagellin C-terminal helical region 217 301 1.8E-24 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 Gene3D G3DSA:1.10.8.410 249 302 8.5E-23 T 14-10-2018 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 SUPERFAMILY SSF64518 1 302 5.1E-95 T 14-10-2018 RY45_09280 af5ff34ad3b67ef96c70596e5ff77cf7 303 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 1.8E-42 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 PRINTS PR00471 Acetate kinase family signature 301 314 2.0E-47 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 PRINTS PR00471 Acetate kinase family signature 205 226 2.0E-47 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 PRINTS PR00471 Acetate kinase family signature 5 16 2.0E-47 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 PRINTS PR00471 Acetate kinase family signature 175 188 2.0E-47 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 PRINTS PR00471 Acetate kinase family signature 379 391 2.0E-47 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 PRINTS PR00471 Acetate kinase family signature 324 340 2.0E-47 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 Gene3D G3DSA:3.30.420.40 2 197 6.5E-74 T 14-10-2018 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 SUPERFAMILY SSF53067 158 398 1.1E-84 T 14-10-2018 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 PIRSF PIRSF000722 1 399 1.9E-142 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 Pfam PF00871 Acetokinase family 5 392 5.0E-156 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 Gene3D G3DSA:3.30.420.40 198 399 2.1E-82 T 14-10-2018 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 TIGRFAM TIGR00016 ackA: acetate kinase 2 397 4.4E-167 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 SUPERFAMILY SSF53067 3 198 1.49E-62 T 14-10-2018 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 205 222 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_18415 eab8dafc1a0c7bfd9a369c52e122fa71 399 Hamap MF_00020 Acetate kinase [ackA]. 1 399 185.641 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 SUPERFAMILY SSF48163 299 461 2.88E-46 T 14-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 Gene3D G3DSA:1.10.10.350 367 470 3.3E-24 T 14-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 2.5E-118 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 Gene3D G3DSA:3.40.50.620 1 314 2.8E-137 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 2.2E-27 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 2.2E-27 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 2.2E-27 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 2.2E-27 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 2.2E-27 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 33.155 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 459 3.7E-197 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RY45_17750 36cc016f75f70d4d5cbe026655a18329 471 SUPERFAMILY SSF52374 2 298 1.74E-113 T 14-10-2018 RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 SUPERFAMILY SSF51161 1 256 2.17E-81 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 256 43.764 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 PIRSF PIRSF000456 1 257 2.4E-104 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 2 254 7.6E-101 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 2 27 2.1E-4 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 137 1.2E-8 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 30 56 5.5E-5 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 59 93 6.9E-4 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 174 255 3.6E-27 T 14-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 Gene3D G3DSA:2.160.10.10 1 189 8.1E-57 T 14-10-2018 RY45_06355 eb8e6b12501c5caa45b60f18822f16a3 257 Gene3D G3DSA:1.20.1180.10 191 256 6.1E-23 T 14-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 RY45_09355 6d5edfc68119221b567acffd938424df 220 SUPERFAMILY SSF47616 74 201 1.5E-36 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_09355 6d5edfc68119221b567acffd938424df 220 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 77 2.4E-16 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_09355 6d5edfc68119221b567acffd938424df 220 Gene3D G3DSA:3.40.30.10 6 196 1.2E-85 T 14-10-2018 RY45_09355 6d5edfc68119221b567acffd938424df 220 Pfam PF00043 Glutathione S-transferase, C-terminal domain 114 192 9.1E-10 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal RY45_09355 6d5edfc68119221b567acffd938424df 220 Gene3D G3DSA:1.20.1050.10 83 191 1.2E-85 T 14-10-2018 RY45_09355 6d5edfc68119221b567acffd938424df 220 SUPERFAMILY SSF52833 4 82 3.48E-24 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_05710 252aef70d0861272a7dab194c2162f6e 81 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 4.7E-27 T 14-10-2018 IPR010696 Protein of unknown function DUF1272 RY45_07935 f8138f25aa09790cc0d19924642694ad 260 Pfam PF03374 Phage antirepressor protein KilAC domain 153 235 5.0E-6 T 14-10-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 RY45_07935 f8138f25aa09790cc0d19924642694ad 260 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 12 99 4.2E-14 T 14-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family RY45_08370 b714b47001d614c220dbd3b5b3c32840 196 SUPERFAMILY SSF48498 79 192 6.55E-24 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_08370 b714b47001d614c220dbd3b5b3c32840 196 Gene3D G3DSA:1.10.357.10 55 194 4.1E-28 T 14-10-2018 RY45_08370 b714b47001d614c220dbd3b5b3c32840 196 Pfam PF16925 Bacterial transcriptional repressor C-terminal 79 163 1.8E-7 T 14-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RY45_08370 b714b47001d614c220dbd3b5b3c32840 196 SUPERFAMILY SSF46689 2 81 1.08E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_08370 b714b47001d614c220dbd3b5b3c32840 196 Gene3D G3DSA:1.10.10.60 2 54 3.7E-11 T 14-10-2018 RY45_08370 b714b47001d614c220dbd3b5b3c32840 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 4.5E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_08725 2b69bec70170dfa3a063e53f866468eb 256 SUPERFAMILY SSF53850 36 251 1.3E-28 T 14-10-2018 RY45_08725 2b69bec70170dfa3a063e53f866468eb 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 251 6.8E-19 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_08725 2b69bec70170dfa3a063e53f866468eb 256 Gene3D G3DSA:3.40.190.10 38 251 3.1E-18 T 14-10-2018 RY45_08725 2b69bec70170dfa3a063e53f866468eb 256 Gene3D G3DSA:3.40.190.10 118 212 3.1E-18 T 14-10-2018 RY45_16885 e5b75df5a522248d541c27215d65e26e 135 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 14-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site RY45_16885 e5b75df5a522248d541c27215d65e26e 135 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 132 5.0E-51 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RY45_16885 e5b75df5a522248d541c27215d65e26e 135 Gene3D G3DSA:1.10.1200.120 3 133 1.3E-43 T 14-10-2018 IPR036019 Gated mechanosensitive channel RY45_16885 e5b75df5a522248d541c27215d65e26e 135 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 130 5.0E-46 T 14-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L RY45_16885 e5b75df5a522248d541c27215d65e26e 135 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 1.3E-11 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RY45_16885 e5b75df5a522248d541c27215d65e26e 135 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 1.3E-11 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RY45_16885 e5b75df5a522248d541c27215d65e26e 135 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 1.3E-11 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RY45_16885 e5b75df5a522248d541c27215d65e26e 135 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 131 24.115 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RY45_16885 e5b75df5a522248d541c27215d65e26e 135 SUPERFAMILY SSF81330 13 126 9.81E-36 T 14-10-2018 IPR036019 Gated mechanosensitive channel RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Gene3D G3DSA:3.30.950.10 331 462 5.7E-44 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 SUPERFAMILY SSF75615 114 205 1.29E-23 T 14-10-2018 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Gene3D G3DSA:1.10.8.210 149 212 9.5E-16 T 14-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Pfam PF14824 Sirohaem biosynthesis protein central 119 146 7.8E-7 T 14-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Pfam PF13241 Putative NAD(P)-binding 6 115 1.6E-25 T 14-10-2018 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 9.9E-16 T 14-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 SUPERFAMILY SSF53790 211 455 3.93E-79 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 217 427 1.3E-47 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 PIRSF PIRSF036426 1 463 3.9E-196 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 295 328 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Gene3D G3DSA:3.40.50.720 1 112 2.8E-32 T 14-10-2018 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 50.002 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Gene3D G3DSA:3.30.160.110 113 148 2.9E-18 T 14-10-2018 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 Gene3D G3DSA:3.40.1010.10 213 330 6.9E-43 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 SUPERFAMILY SSF51735 1 112 2.31E-28 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 215 447 1.1E-88 T 14-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_13385 eee23afec6a0c84b50d2d6038bb7e504 463 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 7.7E-70 T 14-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 8.9E-7 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 8.9E-7 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 Gene3D G3DSA:1.10.10.10 6 82 1.6E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 Gene3D G3DSA:3.40.640.10 112 467 1.7E-112 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 Pfam PF00155 Aminotransferase class I and II 147 468 6.2E-20 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 SMART SM00345 22 81 2.3E-10 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 SUPERFAMILY SSF46785 12 84 5.6E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 2.1E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_19540 3b78748c1c0ad6ddbd025728d627b5f8 478 SUPERFAMILY SSF53383 121 472 1.24E-83 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_12925 1594595d3c02b810276fa0b5bb3cd2fb 324 Gene3D G3DSA:3.40.50.1400 4 322 2.8E-96 T 14-10-2018 RY45_12925 1594595d3c02b810276fa0b5bb3cd2fb 324 ProSitePatterns PS00534 Ferrochelatase signature. 192 210 - T 14-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RY45_12925 1594595d3c02b810276fa0b5bb3cd2fb 324 TIGRFAM TIGR00109 hemH: ferrochelatase 3 322 2.4E-104 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RY45_12925 1594595d3c02b810276fa0b5bb3cd2fb 324 Pfam PF00762 Ferrochelatase 4 322 1.5E-115 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RY45_12925 1594595d3c02b810276fa0b5bb3cd2fb 324 Hamap MF_00323 Ferrochelatase [hemH]. 3 323 37.322 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RY45_12925 1594595d3c02b810276fa0b5bb3cd2fb 324 Gene3D G3DSA:3.40.50.1400 166 304 2.8E-96 T 14-10-2018 RY45_12925 1594595d3c02b810276fa0b5bb3cd2fb 324 SUPERFAMILY SSF53800 3 323 5.07E-104 T 14-10-2018 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 Gene3D G3DSA:1.10.8.60 357 432 2.2E-20 T 14-10-2018 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 SUPERFAMILY SSF52540 185 420 1.04E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00865 504af55b8bde15a71a0ec933c575527d 506 SMART SM00065 19 166 8.0E-14 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 SMART SM00382 206 349 2.4E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_00865 504af55b8bde15a71a0ec933c575527d 506 SUPERFAMILY SSF55781 21 168 1.0E-16 T 14-10-2018 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 Hamap MF_01314 Anaerobic nitric oxide reductase transcription regulator NorR [norR]. 1 506 62.678 T 14-10-2018 IPR023944 Anaerobic nitric oxide reductase transcription regulator GO:0003700|GO:0006355 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 Gene3D G3DSA:1.10.10.60 458 506 8.9E-7 T 14-10-2018 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 Gene3D G3DSA:3.30.450.40 3 170 1.2E-15 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_00865 504af55b8bde15a71a0ec933c575527d 506 SUPERFAMILY SSF46689 451 506 3.27E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 Gene3D G3DSA:3.40.50.300 179 356 6.6E-64 T 14-10-2018 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 Pfam PF01590 GAF domain 21 154 6.0E-10 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 Pfam PF00158 Sigma-54 interaction domain 186 353 6.4E-68 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_00865 504af55b8bde15a71a0ec933c575527d 506 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 399 408 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_00865 504af55b8bde15a71a0ec933c575527d 506 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 210 223 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_14270 915cb716f0c425ffd3bf80178a34b19a 347 SUPERFAMILY SSF55486 183 345 4.39E-51 T 14-10-2018 RY45_14270 915cb716f0c425ffd3bf80178a34b19a 347 SMART SM01351 209 341 1.3E-69 T 14-10-2018 IPR029463 Lysine-specific metallo-endopeptidase GO:0004222 RY45_14270 915cb716f0c425ffd3bf80178a34b19a 347 Gene3D G3DSA:3.40.390.10 177 347 1.8E-75 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RY45_14270 915cb716f0c425ffd3bf80178a34b19a 347 Pfam PF14521 Lysine-specific metallo-endopeptidase 214 341 1.1E-45 T 14-10-2018 IPR029463 Lysine-specific metallo-endopeptidase GO:0004222 RY45_14270 915cb716f0c425ffd3bf80178a34b19a 347 Gene3D G3DSA:2.60.40.2970 23 164 1.5E-54 T 14-10-2018 RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 Gene3D G3DSA:3.30.830.10 726 925 1.4E-41 T 14-10-2018 RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 Gene3D G3DSA:3.30.830.10 36 260 2.8E-65 T 14-10-2018 RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 Pfam PF05193 Peptidase M16 inactive domain 672 847 9.2E-28 T 14-10-2018 IPR007863 Peptidase M16, C-terminal RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 Pfam PF05193 Peptidase M16 inactive domain 206 383 3.5E-26 T 14-10-2018 IPR007863 Peptidase M16, C-terminal RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 SUPERFAMILY SSF63411 734 927 4.83E-39 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 SUPERFAMILY SSF63411 263 455 6.67E-34 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 SUPERFAMILY SSF63411 505 708 3.14E-44 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 Gene3D G3DSA:3.30.830.10 510 716 1.2E-40 T 14-10-2018 RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 Pfam PF00675 Insulinase (Peptidase family M16) 528 641 4.4E-10 T 14-10-2018 IPR011765 Peptidase M16, N-terminal RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 Pfam PF00675 Insulinase (Peptidase family M16) 49 184 7.6E-18 T 14-10-2018 IPR011765 Peptidase M16, N-terminal RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 SUPERFAMILY SSF63411 37 245 1.54E-54 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_04055 0acc1f1e1c74fbd6ad85605bf3fa9a92 937 Gene3D G3DSA:3.30.830.10 262 460 1.1E-34 T 14-10-2018 RY45_11865 90685cb342fd29218ccefa6a90550ced 356 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 350 2.8E-111 T 14-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RY45_11865 90685cb342fd29218ccefa6a90550ced 356 Gene3D G3DSA:3.40.640.10 51 255 3.9E-123 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_11865 90685cb342fd29218ccefa6a90550ced 356 SUPERFAMILY SSF53383 5 350 1.32E-75 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_11865 90685cb342fd29218ccefa6a90550ced 356 Pfam PF00155 Aminotransferase class I and II 45 345 6.6E-51 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_11865 90685cb342fd29218ccefa6a90550ced 356 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 352 54.308 T 14-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RY45_11865 90685cb342fd29218ccefa6a90550ced 356 Gene3D G3DSA:3.90.1150.10 6 343 3.9E-123 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_11865 90685cb342fd29218ccefa6a90550ced 356 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 208 217 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RY45_03155 7558b3497961bd6f0e4df9a70a431920 150 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 144 2.6E-49 T 14-10-2018 IPR003791 Protein of unknown function UPF0178 RY45_03155 7558b3497961bd6f0e4df9a70a431920 150 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.879 T 14-10-2018 IPR003791 Protein of unknown function UPF0178 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 SUPERFAMILY SSF57716 218 269 1.63E-15 T 14-10-2018 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 SMART SM00898 2 115 3.0E-47 T 14-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 Gene3D G3DSA:1.10.8.50 132 270 1.3E-46 T 14-10-2018 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 SUPERFAMILY SSF46946 131 222 3.4E-31 T 14-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 270 42.748 T 14-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 269 1.3E-89 T 14-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 SUPERFAMILY SSF81624 2 139 5.23E-38 T 14-10-2018 IPR035937 MutM-like, N-terminal RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 SMART SM01232 130 222 2.2E-50 T 14-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 113 3.3E-27 T 14-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 219 5.0E-28 T 14-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 Gene3D G3DSA:3.20.190.10 2 128 5.2E-37 T 14-10-2018 IPR035937 MutM-like, N-terminal RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 Pfam PF06827 Zinc finger found in FPG and IleRS 242 269 1.4E-5 T 14-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 RY45_01115 2cf267939ace6ca9aec2d703a6ad29c5 270 ProSitePatterns PS01242 Zinc finger FPG-type signature. 245 269 - T 14-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 Gene3D G3DSA:3.40.190.10 182 281 2.6E-55 T 14-10-2018 RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 Gene3D G3DSA:3.40.190.10 92 305 2.6E-55 T 14-10-2018 RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 Pfam PF03466 LysR substrate binding domain 98 307 1.2E-20 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 SUPERFAMILY SSF46785 8 88 3.74E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 2.6E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 2.6E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 2.6E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 Gene3D G3DSA:1.10.10.10 2 89 4.4E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 SUPERFAMILY SSF53850 92 307 8.69E-40 T 14-10-2018 RY45_02090 9cc4115d1138a99f2cbe7ed5199cbfe7 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 9.0E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07410 7b9ecb47719574163d58cba86183715b 212 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 10 212 38.493 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RY45_07410 7b9ecb47719574163d58cba86183715b 212 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 2 212 1.5E-91 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RY45_07410 7b9ecb47719574163d58cba86183715b 212 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 35 116 2.9E-23 T 14-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RY45_07410 7b9ecb47719574163d58cba86183715b 212 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 182 195 - T 14-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RY45_07410 7b9ecb47719574163d58cba86183715b 212 SUPERFAMILY SSF50475 15 212 5.99E-68 T 14-10-2018 RY45_07410 7b9ecb47719574163d58cba86183715b 212 Gene3D G3DSA:2.30.110.10 14 212 2.5E-77 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RY45_07410 7b9ecb47719574163d58cba86183715b 212 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 172 212 2.0E-18 T 14-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RY45_07410 7b9ecb47719574163d58cba86183715b 212 PIRSF PIRSF000190 1 212 2.8E-79 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RY45_21290 99a5dcf6f8003a9d65c389af8818ac30 300 SUPERFAMILY SSF46689 240 290 1.52E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_21290 99a5dcf6f8003a9d65c389af8818ac30 300 Gene3D G3DSA:1.10.10.60 183 292 5.7E-26 T 14-10-2018 RY45_21290 99a5dcf6f8003a9d65c389af8818ac30 300 SMART SM00342 204 287 1.0E-21 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_21290 99a5dcf6f8003a9d65c389af8818ac30 300 SUPERFAMILY SSF46689 188 238 1.1E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_21290 99a5dcf6f8003a9d65c389af8818ac30 300 Pfam PF06719 AraC-type transcriptional regulator N-terminus 26 174 1.2E-37 T 14-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal RY45_21290 99a5dcf6f8003a9d65c389af8818ac30 300 Pfam PF12833 Helix-turn-helix domain 210 285 2.9E-19 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_05475 15baef00bc400cee95beb22577a8ec52 80 PIRSF PIRSF006169 1 76 4.1E-33 T 14-10-2018 IPR010648 Uncharacterised protein family UPF0270 RY45_05475 15baef00bc400cee95beb22577a8ec52 80 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 22.739 T 14-10-2018 IPR010648 Uncharacterised protein family UPF0270 RY45_05475 15baef00bc400cee95beb22577a8ec52 80 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 68 1.1E-32 T 14-10-2018 IPR010648 Uncharacterised protein family UPF0270 RY45_05475 15baef00bc400cee95beb22577a8ec52 80 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 7.0E-21 T 14-10-2018 IPR010648 Uncharacterised protein family UPF0270 RY45_05475 15baef00bc400cee95beb22577a8ec52 80 Gene3D G3DSA:1.10.10.610 1 77 2.6E-28 T 14-10-2018 IPR036685 YehU-like superfamily RY45_05475 15baef00bc400cee95beb22577a8ec52 80 SUPERFAMILY SSF118001 1 72 6.54E-27 T 14-10-2018 IPR036685 YehU-like superfamily RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.7E-9 T 14-10-2018 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 3.7E-9 T 14-10-2018 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 Gene3D G3DSA:4.10.80.40 542 576 1.3E-18 T 14-10-2018 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 PIRSF PIRSF000171 1 574 7.7E-43 T 14-10-2018 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 580 1.9E-39 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 Pfam PF00890 FAD binding domain 7 397 1.7E-110 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 SUPERFAMILY SSF46977 444 587 7.19E-48 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 14-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 Gene3D G3DSA:3.90.700.10 237 363 4.0E-159 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 Gene3D G3DSA:1.20.58.100 423 539 5.9E-34 T 14-10-2018 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 SUPERFAMILY SSF51905 4 418 1.95E-72 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 4 581 0.0 T 14-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 Gene3D G3DSA:3.50.50.60 7 409 4.0E-159 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 SUPERFAMILY SSF56425 227 358 1.39E-40 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 580 4.8E-235 T 14-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.9E-5 T 14-10-2018 RY45_16545 10caa57e8a3b43f7c7cfe1f3e493e85a 594 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 3.9E-5 T 14-10-2018 RY45_16835 8ddeac2673b5374454935c5f80d4f320 626 SUPERFAMILY SSF53098 220 418 5.06E-21 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_16835 8ddeac2673b5374454935c5f80d4f320 626 Gene3D G3DSA:3.30.420.10 222 429 4.2E-34 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_16835 8ddeac2673b5374454935c5f80d4f320 626 Pfam PF09299 Mu transposase, C-terminal 446 510 4.3E-12 T 14-10-2018 IPR015378 Transposase-like, Mu, C-terminal RY45_16835 8ddeac2673b5374454935c5f80d4f320 626 Pfam PF00665 Integrase core domain 225 361 1.8E-14 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RY45_10860 f6509eec731579415574f54827acaad0 329 PIRSF PIRSF039102 1 329 1.4E-75 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_10860 f6509eec731579415574f54827acaad0 329 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 328 5.3E-90 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_10860 f6509eec731579415574f54827acaad0 329 Pfam PF01820 D-ala D-ala ligase N-terminus 6 105 2.4E-14 T 14-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_10860 f6509eec731579415574f54827acaad0 329 Gene3D G3DSA:3.30.1490.20 131 198 2.8E-78 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_10860 f6509eec731579415574f54827acaad0 329 Gene3D G3DSA:3.30.470.20 104 319 2.8E-78 T 14-10-2018 RY45_10860 f6509eec731579415574f54827acaad0 329 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 82 93 - T 14-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_10860 f6509eec731579415574f54827acaad0 329 Gene3D G3DSA:3.40.50.20 19 325 2.8E-78 T 14-10-2018 RY45_10860 f6509eec731579415574f54827acaad0 329 SUPERFAMILY SSF56059 115 326 3.35E-45 T 14-10-2018 RY45_10860 f6509eec731579415574f54827acaad0 329 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 329 32.822 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_10860 f6509eec731579415574f54827acaad0 329 Pfam PF07478 D-ala D-ala ligase C-terminus 124 325 2.5E-52 T 14-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_10860 f6509eec731579415574f54827acaad0 329 SUPERFAMILY SSF52440 4 114 5.85E-24 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_10860 f6509eec731579415574f54827acaad0 329 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 271 299 - T 14-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_07400 e5972498828db6ccad006e4c3fa7a872 659 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 183 381 6.9E-31 T 14-10-2018 RY45_07400 e5972498828db6ccad006e4c3fa7a872 659 SUPERFAMILY SSF55486 188 394 4.81E-25 T 14-10-2018 RY45_07400 e5972498828db6ccad006e4c3fa7a872 659 Gene3D G3DSA:3.40.390.10 175 399 1.8E-18 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RY45_07755 c1feb5c81fe71e408406619b83be4fbe 68 Pfam PF14549 DNA-binding transcriptional regulator Cro 2 52 3.7E-13 T 14-10-2018 RY45_07755 c1feb5c81fe71e408406619b83be4fbe 68 SUPERFAMILY SSF47413 1 53 1.09E-12 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_07755 c1feb5c81fe71e408406619b83be4fbe 68 Gene3D G3DSA:1.10.260.40 1 60 5.6E-20 T 14-10-2018 RY45_11305 c99c3d48471bf21f67808e3b6f7255fd 291 Pfam PF13407 Periplasmic binding protein domain 27 276 1.6E-58 T 14-10-2018 IPR025997 Periplasmic binding protein RY45_11305 c99c3d48471bf21f67808e3b6f7255fd 291 Gene3D G3DSA:3.40.50.2300 124 258 8.0E-96 T 14-10-2018 RY45_11305 c99c3d48471bf21f67808e3b6f7255fd 291 SUPERFAMILY SSF53822 25 290 3.88E-83 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_11305 c99c3d48471bf21f67808e3b6f7255fd 291 Gene3D G3DSA:3.40.50.2300 30 276 8.0E-96 T 14-10-2018 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.1E-43 T 14-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 2.4E-81 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 Gene3D G3DSA:3.30.470.20 86 433 1.0E-155 T 14-10-2018 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 2.7E-38 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 444 1.3E-239 T 14-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 SMART SM00878 336 441 8.3E-63 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 Gene3D G3DSA:3.40.50.20 1 85 1.5E-33 T 14-10-2018 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 SUPERFAMILY SSF51246 331 443 3.19E-43 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 SUPERFAMILY SSF56059 83 345 1.2E-69 T 14-10-2018 RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 SUPERFAMILY SSF52440 1 113 1.01E-45 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_17260 fca225ac0e75e890601ceb7ff56570fe 446 Gene3D G3DSA:3.30.1490.20 131 203 1.0E-155 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_03450 80f936188e434d1953d9bde00196b7d0 196 Gene3D G3DSA:2.160.10.10 1 187 2.3E-64 T 14-10-2018 RY45_03450 80f936188e434d1953d9bde00196b7d0 196 SMART SM01266 5 59 3.8E-9 T 14-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RY45_03450 80f936188e434d1953d9bde00196b7d0 196 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 131 165 2.9E-11 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_03450 80f936188e434d1953d9bde00196b7d0 196 SUPERFAMILY SSF51161 16 188 4.16E-48 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_03450 80f936188e434d1953d9bde00196b7d0 196 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 139 167 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_03450 80f936188e434d1953d9bde00196b7d0 196 Pfam PF12464 Maltose acetyltransferase 8 57 1.7E-6 T 14-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RY45_06760 1ddf7ec6d4d5a15d7fd8979e33507042 71 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 63 5.0E-7 T 14-10-2018 IPR009491 Protein of unknown function DUF1107 RY45_06760 1ddf7ec6d4d5a15d7fd8979e33507042 71 Gene3D G3DSA:3.30.1910.10 1 65 3.6E-9 T 14-10-2018 RY45_06760 1ddf7ec6d4d5a15d7fd8979e33507042 71 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 4.6E-22 T 14-10-2018 IPR009491 Protein of unknown function DUF1107 RY45_15395 98e33529f25e3677b35b6cd140175d73 297 Pfam PF02833 DHHA2 domain 178 290 1.4E-9 T 14-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RY45_15395 98e33529f25e3677b35b6cd140175d73 297 SMART SM01131 176 292 5.8E-25 T 14-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RY45_15395 98e33529f25e3677b35b6cd140175d73 297 Gene3D G3DSA:3.90.1640.10 1 183 4.7E-54 T 14-10-2018 RY45_15395 98e33529f25e3677b35b6cd140175d73 297 Pfam PF01368 DHH family 4 141 1.6E-13 T 14-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RY45_15395 98e33529f25e3677b35b6cd140175d73 297 Gene3D G3DSA:3.10.310.20 185 293 1.8E-20 T 14-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RY45_15395 98e33529f25e3677b35b6cd140175d73 297 SUPERFAMILY SSF64182 2 291 6.41E-51 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily RY45_05185 3a5df8228d6a7927b5c342ea51a638bf 329 Pfam PF00296 Luciferase-like monooxygenase 19 301 1.3E-35 T 14-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RY45_05185 3a5df8228d6a7927b5c342ea51a638bf 329 Gene3D G3DSA:3.20.20.30 2 328 3.4E-97 T 14-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RY45_05185 3a5df8228d6a7927b5c342ea51a638bf 329 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 7 324 2.2E-130 T 14-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 RY45_05185 3a5df8228d6a7927b5c342ea51a638bf 329 SUPERFAMILY SSF51679 5 324 1.83E-82 T 14-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RY45_04730 ae93cadbc7ca21557665831b7c27619f 198 SUPERFAMILY SSF52972 1 194 1.07E-72 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_04730 ae93cadbc7ca21557665831b7c27619f 198 Pfam PF01725 Ham1 family 4 192 3.0E-56 T 14-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 RY45_04730 ae93cadbc7ca21557665831b7c27619f 198 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 194 3.4E-59 T 14-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 RY45_04730 ae93cadbc7ca21557665831b7c27619f 198 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 196 48.847 T 14-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 RY45_04730 ae93cadbc7ca21557665831b7c27619f 198 Gene3D G3DSA:3.90.950.10 1 197 1.2E-77 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_01385 09bd4df1b8397f65486331c6978dc637 723 Gene3D G3DSA:1.10.10.160 114 187 6.0E-99 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily RY45_01385 09bd4df1b8397f65486331c6978dc637 723 Gene3D G3DSA:3.40.50.300 10 273 6.0E-99 T 14-10-2018 RY45_01385 09bd4df1b8397f65486331c6978dc637 723 Gene3D G3DSA:3.40.50.300 281 636 1.6E-129 T 14-10-2018 RY45_01385 09bd4df1b8397f65486331c6978dc637 723 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 1.4E-71 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RY45_01385 09bd4df1b8397f65486331c6978dc637 723 SUPERFAMILY SSF52540 6 642 5.61E-177 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01385 09bd4df1b8397f65486331c6978dc637 723 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 4.3E-76 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RY45_01385 09bd4df1b8397f65486331c6978dc637 723 Gene3D G3DSA:1.10.486.10 382 538 1.6E-129 T 14-10-2018 RY45_01385 09bd4df1b8397f65486331c6978dc637 723 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 721 0.0 T 14-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 RY45_04890 f2f7de63f04eaa99faf3d412a8b975d9 96 Pfam PF07238 PilZ domain 7 93 1.3E-13 T 14-10-2018 IPR009875 PilZ domain GO:0035438 RY45_04890 f2f7de63f04eaa99faf3d412a8b975d9 96 Gene3D G3DSA:2.40.10.220 2 96 1.7E-14 T 14-10-2018 RY45_04890 f2f7de63f04eaa99faf3d412a8b975d9 96 SUPERFAMILY SSF141371 2 86 2.75E-15 T 14-10-2018 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 Pfam PF02274 Amidinotransferase 18 403 1.7E-107 T 14-10-2018 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 Hamap MF_00242 Arginine deiminase [arcA]. 1 406 44.235 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 SUPERFAMILY SSF55909 3 406 3.93E-127 T 14-10-2018 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 Gene3D G3DSA:3.75.10.10 6 403 2.6E-150 T 14-10-2018 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 PRINTS PR01466 Bacterial arginine deiminase signature 2 22 3.9E-45 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 PRINTS PR01466 Bacterial arginine deiminase signature 177 192 3.9E-45 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 PRINTS PR01466 Bacterial arginine deiminase signature 362 376 3.9E-45 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 PRINTS PR01466 Bacterial arginine deiminase signature 149 167 3.9E-45 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 PRINTS PR01466 Bacterial arginine deiminase signature 342 359 3.9E-45 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 PRINTS PR01466 Bacterial arginine deiminase signature 385 403 3.9E-45 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 TIGRFAM TIGR01078 arcA: arginine deiminase 5 406 1.6E-160 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 PIRSF PIRSF006356 1 406 3.5E-150 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RY45_21350 cd29015e8d968e910d7ec464e2e3b14b 406 Gene3D G3DSA:1.10.3930.10 68 148 2.6E-150 T 14-10-2018 RY45_04365 7e2bcd2e2b43e7cdc5647a3193324cdd 416 SMART SM00283 153 414 2.3E-65 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_04365 7e2bcd2e2b43e7cdc5647a3193324cdd 416 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 203 381 3.5E-43 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_04365 7e2bcd2e2b43e7cdc5647a3193324cdd 416 SMART SM00304 86 138 1.1E-4 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_04365 7e2bcd2e2b43e7cdc5647a3193324cdd 416 Gene3D G3DSA:1.10.287.950 86 416 4.8E-70 T 14-10-2018 RY45_04365 7e2bcd2e2b43e7cdc5647a3193324cdd 416 SUPERFAMILY SSF58104 106 415 6.28E-73 T 14-10-2018 RY45_19525 81ae9a42b7f337dc03a6b265f3535aca 240 Gene3D G3DSA:3.40.630.30 19 236 8.9E-56 T 14-10-2018 RY45_19525 81ae9a42b7f337dc03a6b265f3535aca 240 SUPERFAMILY SSF55729 33 200 9.9E-34 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_19525 81ae9a42b7f337dc03a6b265f3535aca 240 Pfam PF13302 Acetyltransferase (GNAT) domain 39 175 5.5E-10 T 14-10-2018 IPR000182 GNAT domain RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Gene3D G3DSA:1.10.8.60 766 857 4.3E-26 T 14-10-2018 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 855 0.0 T 14-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 844 1.3E-24 T 14-10-2018 IPR019489 Clp ATPase, C-terminal RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 320 3.9E-13 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Gene3D G3DSA:3.40.50.300 148 342 7.9E-74 T 14-10-2018 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.2E-12 T 14-10-2018 IPR004176 Clp, N-terminal RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 4.0E-11 T 14-10-2018 IPR004176 Clp, N-terminal RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Gene3D G3DSA:1.10.1780.10 1 147 6.2E-31 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Gene3D G3DSA:3.40.50.300 550 764 4.2E-90 T 14-10-2018 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 SUPERFAMILY SSF52540 159 545 3.33E-97 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 6.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 6.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 6.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 6.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 SMART SM00382 198 343 2.0E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 SMART SM00382 597 758 2.0E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 SMART SM01086 766 855 3.4E-34 T 14-10-2018 IPR019489 Clp ATPase, C-terminal RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 SUPERFAMILY SSF52540 546 843 2.86E-82 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Gene3D G3DSA:3.40.50.300 343 544 3.9E-67 T 14-10-2018 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 759 5.5E-56 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 RY45_21235 b166326a8fffb1d0e70c752e54c71895 857 SUPERFAMILY SSF81923 4 156 5.1E-41 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RY45_11450 7de7d32eca31874d989243d875ebed3f 640 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_11450 7de7d32eca31874d989243d875ebed3f 640 Pfam PF12848 ABC transporter 224 299 1.0E-9 T 14-10-2018 IPR032781 ABC-transporter extension domain RY45_11450 7de7d32eca31874d989243d875ebed3f 640 SUPERFAMILY SSF52540 10 238 1.93E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11450 7de7d32eca31874d989243d875ebed3f 640 Pfam PF16326 ABC transporter C-terminal domain 566 634 1.3E-18 T 14-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RY45_11450 7de7d32eca31874d989243d875ebed3f 640 Gene3D G3DSA:1.10.287.380 558 639 3.0E-25 T 14-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 RY45_11450 7de7d32eca31874d989243d875ebed3f 640 Pfam PF00005 ABC transporter 19 185 6.9E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_11450 7de7d32eca31874d989243d875ebed3f 640 SMART SM00382 28 230 5.1E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_11450 7de7d32eca31874d989243d875ebed3f 640 SMART SM00382 344 514 2.1E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_11450 7de7d32eca31874d989243d875ebed3f 640 Pfam PF00005 ABC transporter 336 469 1.6E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_11450 7de7d32eca31874d989243d875ebed3f 640 SUPERFAMILY SSF52540 312 517 3.08E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11450 7de7d32eca31874d989243d875ebed3f 640 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_11450 7de7d32eca31874d989243d875ebed3f 640 Gene3D G3DSA:3.40.50.300 282 550 1.1E-63 T 14-10-2018 RY45_11450 7de7d32eca31874d989243d875ebed3f 640 Gene3D G3DSA:3.40.50.300 9 279 5.4E-67 T 14-10-2018 RY45_13790 d26b99fbfcacb2bbce422084a71d488f 212 SUPERFAMILY SSF52833 1 84 2.12E-26 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_13790 d26b99fbfcacb2bbce422084a71d488f 212 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 79 7.6E-16 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_13790 d26b99fbfcacb2bbce422084a71d488f 212 Pfam PF14497 Glutathione S-transferase, C-terminal domain 121 196 1.4E-6 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal RY45_13790 d26b99fbfcacb2bbce422084a71d488f 212 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 3 210 2.7E-89 T 14-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 RY45_13790 d26b99fbfcacb2bbce422084a71d488f 212 SUPERFAMILY SSF47616 81 210 5.97E-34 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_13790 d26b99fbfcacb2bbce422084a71d488f 212 Gene3D G3DSA:3.40.30.10 1 88 6.3E-29 T 14-10-2018 RY45_13790 d26b99fbfcacb2bbce422084a71d488f 212 Gene3D G3DSA:1.20.1050.10 89 212 3.9E-55 T 14-10-2018 RY45_06485 60771b19e8041c3937e6e7844fddb06a 289 Pfam PF12146 Serine aminopeptidase, S33 82 189 2.7E-14 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 RY45_06485 60771b19e8041c3937e6e7844fddb06a 289 SUPERFAMILY SSF53474 76 273 3.6E-24 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_06485 60771b19e8041c3937e6e7844fddb06a 289 Gene3D G3DSA:3.40.50.1820 59 280 4.1E-23 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_06740 9db13cb99901b3655560d747600a4a32 339 Gene3D G3DSA:3.40.190.10 126 222 5.4E-48 T 14-10-2018 RY45_06740 9db13cb99901b3655560d747600a4a32 339 Gene3D G3DSA:3.40.190.10 24 253 5.4E-48 T 14-10-2018 RY45_06740 9db13cb99901b3655560d747600a4a32 339 SUPERFAMILY SSF53850 25 253 7.39E-46 T 14-10-2018 RY45_06740 9db13cb99901b3655560d747600a4a32 339 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site RY45_06740 9db13cb99901b3655560d747600a4a32 339 SMART SM00062 34 264 2.3E-47 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_06740 9db13cb99901b3655560d747600a4a32 339 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 250 2.6E-28 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_19535 045bed4fbd4e5d03b5e42b2c3c1cb9ad 155 Gene3D G3DSA:3.30.300.20 1 153 1.2E-48 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_19535 045bed4fbd4e5d03b5e42b2c3c1cb9ad 155 Pfam PF02566 OsmC-like protein 55 153 4.4E-14 T 14-10-2018 IPR003718 OsmC/Ohr family RY45_19535 045bed4fbd4e5d03b5e42b2c3c1cb9ad 155 SUPERFAMILY SSF82784 1 152 1.57E-48 T 14-10-2018 IPR036102 OsmC/Ohr superfamily RY45_13620 6e92bea86579c66c2a381a2c1e8e397d 87 Pfam PF00462 Glutaredoxin 4 69 9.4E-16 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RY45_13620 6e92bea86579c66c2a381a2c1e8e397d 87 SUPERFAMILY SSF52833 4 82 8.23E-20 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_13620 6e92bea86579c66c2a381a2c1e8e397d 87 Gene3D G3DSA:3.40.30.10 3 85 6.9E-24 T 14-10-2018 RY45_13620 6e92bea86579c66c2a381a2c1e8e397d 87 PRINTS PR00160 Glutaredoxin signature 66 79 2.0E-11 T 14-10-2018 IPR014025 Glutaredoxin subgroup RY45_13620 6e92bea86579c66c2a381a2c1e8e397d 87 PRINTS PR00160 Glutaredoxin signature 3 21 2.0E-11 T 14-10-2018 IPR014025 Glutaredoxin subgroup RY45_13620 6e92bea86579c66c2a381a2c1e8e397d 87 PRINTS PR00160 Glutaredoxin signature 52 65 2.0E-11 T 14-10-2018 IPR014025 Glutaredoxin subgroup RY45_13620 6e92bea86579c66c2a381a2c1e8e397d 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 14-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 RY45_13620 6e92bea86579c66c2a381a2c1e8e397d 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 85 2.4E-48 T 14-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 RY45_00110 57eeb69b141a154053a1118fa766715e 187 Pfam PF16295 Tetracycline repressor, C-terminal all-alpha domain 64 184 5.7E-7 T 14-10-2018 IPR032551 HTH-type transcriptional repressor, C-terminal RY45_00110 57eeb69b141a154053a1118fa766715e 187 Gene3D G3DSA:1.10.357.10 1 185 5.8E-49 T 14-10-2018 RY45_00110 57eeb69b141a154053a1118fa766715e 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 1.4E-15 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_00110 57eeb69b141a154053a1118fa766715e 187 SUPERFAMILY SSF46689 3 65 3.45E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_00110 57eeb69b141a154053a1118fa766715e 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 19 50 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_00110 57eeb69b141a154053a1118fa766715e 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 1.8E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_00110 57eeb69b141a154053a1118fa766715e 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 1.8E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_21845 603e7c4663b2bdb0d2005caaa996450a 304 Pfam PF01553 Acyltransferase 79 230 2.1E-14 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_21845 603e7c4663b2bdb0d2005caaa996450a 304 SMART SM00563 89 231 2.5E-20 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_21845 603e7c4663b2bdb0d2005caaa996450a 304 SUPERFAMILY SSF69593 62 287 4.18E-30 T 14-10-2018 RY45_15810 8d5b266adc78dd78025dd3ac07dc03dd 207 Gene3D G3DSA:3.30.70.20 63 120 7.7E-34 T 14-10-2018 RY45_15810 8d5b266adc78dd78025dd3ac07dc03dd 207 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_15810 8d5b266adc78dd78025dd3ac07dc03dd 207 PRINTS PR00354 7Fe ferredoxin signature 67 77 9.8E-5 T 14-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RY45_15810 8d5b266adc78dd78025dd3ac07dc03dd 207 PRINTS PR00354 7Fe ferredoxin signature 84 101 9.8E-5 T 14-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RY45_15810 8d5b266adc78dd78025dd3ac07dc03dd 207 PRINTS PR00354 7Fe ferredoxin signature 57 67 9.8E-5 T 14-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RY45_15810 8d5b266adc78dd78025dd3ac07dc03dd 207 SUPERFAMILY SSF54862 1 182 6.59E-48 T 14-10-2018 RY45_15810 8d5b266adc78dd78025dd3ac07dc03dd 207 Gene3D G3DSA:3.30.70.20 5 178 7.7E-34 T 14-10-2018 RY45_15810 8d5b266adc78dd78025dd3ac07dc03dd 207 Pfam PF13247 4Fe-4S dicluster domain 54 166 4.1E-11 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_18480 c9cf95d62e29c32fad136b10bc18ab3b 238 Gene3D G3DSA:3.40.190.10 27 226 1.8E-19 T 14-10-2018 RY45_18480 c9cf95d62e29c32fad136b10bc18ab3b 238 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 225 1.1E-14 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_18480 c9cf95d62e29c32fad136b10bc18ab3b 238 SUPERFAMILY SSF53850 21 226 2.37E-27 T 14-10-2018 RY45_18480 c9cf95d62e29c32fad136b10bc18ab3b 238 Gene3D G3DSA:3.40.190.10 103 198 1.8E-19 T 14-10-2018 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 Pfam PF00128 Alpha amylase, catalytic domain 84 273 4.1E-11 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 PRINTS PR00110 Alpha-amylase signature 192 203 5.1E-14 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 PRINTS PR00110 Alpha-amylase signature 278 290 5.1E-14 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 PRINTS PR00110 Alpha-amylase signature 103 114 5.1E-14 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 PRINTS PR00110 Alpha-amylase signature 70 87 5.1E-14 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 Gene3D G3DSA:3.20.20.80 18 374 4.4E-128 T 14-10-2018 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 Gene3D G3DSA:2.60.40.1180 375 460 2.5E-27 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 SMART SM00089 578 656 2.2E-12 T 14-10-2018 IPR022409 PKD/Chitinase domain RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 SUPERFAMILY SSF51445 21 371 1.63E-74 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 Pfam PF00801 PKD domain 586 644 1.1E-7 T 14-10-2018 IPR000601 PKD domain RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 Gene3D G3DSA:2.60.40.10 568 657 1.1E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 SMART SM00632 378 460 1.4E-32 T 14-10-2018 IPR031319 Alpha-amylase, C-terminal domain Reactome: R-HSA-189085 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 SMART SM00642 26 369 1.3E-77 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 381 455 3.4E-12 T 14-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 SUPERFAMILY SSF49299 574 656 1.57E-15 T 14-10-2018 IPR035986 PKD domain superfamily RY45_04685 0d2498e6ea35e8ce7e4d7fd6e4aca1c9 858 SUPERFAMILY SSF51011 374 458 1.49E-29 T 14-10-2018 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 Gene3D G3DSA:2.40.50.140 64 128 3.0E-23 T 14-10-2018 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 TIGRFAM TIGR00038 efp: translation elongation factor P 3 187 3.8E-59 T 14-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 Gene3D G3DSA:2.40.50.140 129 188 1.7E-22 T 14-10-2018 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 SUPERFAMILY SSF50104 1 63 2.51E-17 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 PIRSF PIRSF005901 1 188 1.7E-53 T 14-10-2018 IPR020599 Translation elongation factor P/YeiP RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 SUPERFAMILY SSF50249 130 187 9.42E-12 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 Gene3D G3DSA:2.30.30.30 1 62 4.5E-19 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 122 1.3E-15 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 SUPERFAMILY SSF50249 65 128 1.41E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 Hamap MF_00141 Elongation factor P [efp]. 1 187 45.666 T 14-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 SMART SM00841 130 186 2.3E-19 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 Pfam PF09285 Elongation factor P, C-terminal 130 186 2.8E-18 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 SMART SM01185 67 122 4.5E-19 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 RY45_16640 f0a9bf3197310f813bfcc7a097ab1c6d 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 2.4E-19 T 14-10-2018 IPR013185 Translation elongation factor, KOW-like RY45_09865 3a1702075b0b9912889774f590dc215d 168 Gene3D G3DSA:1.20.1540.10 3 165 1.7E-14 T 14-10-2018 IPR035952 Rhomboid-like superfamily RY45_09865 3a1702075b0b9912889774f590dc215d 168 SUPERFAMILY SSF144091 5 159 2.09E-24 T 14-10-2018 RY45_09865 3a1702075b0b9912889774f590dc215d 168 Pfam PF01694 Rhomboid family 14 157 4.5E-12 T 14-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RY45_09865 3a1702075b0b9912889774f590dc215d 168 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 4 155 2.2E-49 T 14-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Gene3D G3DSA:3.30.70.3380 368 478 5.3E-40 T 14-10-2018 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Gene3D G3DSA:3.40.50.300 1 185 6.3E-72 T 14-10-2018 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 306.8 T 14-10-2018 IPR006297 Elongation factor 4 GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 1.8E-49 T 14-10-2018 IPR013842 GTP-binding protein LepA, C-terminal RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 SUPERFAMILY SSF52540 2 232 1.4E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Pfam PF03144 Elongation factor Tu domain 2 205 275 2.5E-9 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Pfam PF00679 Elongation factor G C-terminus 399 483 6.9E-20 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Gene3D G3DSA:2.40.30.10 186 285 5.2E-34 T 14-10-2018 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 SUPERFAMILY SSF54980 292 370 1.62E-18 T 14-10-2018 IPR035647 EF-G domain III/V-like RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 SUPERFAMILY SSF54980 400 493 5.28E-25 T 14-10-2018 IPR035647 EF-G domain III/V-like RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Gene3D G3DSA:3.30.70.870 286 367 1.2E-34 T 14-10-2018 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 2.1E-53 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 Gene3D G3DSA:3.30.70.2570 479 553 2.1E-34 T 14-10-2018 IPR038363 LepA, C-terminal domain superfamily RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 172 3.8E-18 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_04490 9d84a5f09fb7a6ddb9d86130279af66b 597 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 6.8E-302 T 14-10-2018 IPR006297 Elongation factor 4 GO:0005525 RY45_12930 824001679bfb658c6475bebec980e17b 214 Gene3D G3DSA:3.40.50.300 1 214 2.9E-78 T 14-10-2018 RY45_12930 824001679bfb658c6475bebec980e17b 214 PRINTS PR00094 Adenylate kinase signature 32 46 3.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RY45_12930 824001679bfb658c6475bebec980e17b 214 PRINTS PR00094 Adenylate kinase signature 81 97 3.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RY45_12930 824001679bfb658c6475bebec980e17b 214 PRINTS PR00094 Adenylate kinase signature 4 17 3.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RY45_12930 824001679bfb658c6475bebec980e17b 214 PRINTS PR00094 Adenylate kinase signature 156 171 3.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RY45_12930 824001679bfb658c6475bebec980e17b 214 PRINTS PR00094 Adenylate kinase signature 173 187 3.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RY45_12930 824001679bfb658c6475bebec980e17b 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 8.6E-16 T 14-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 RY45_12930 824001679bfb658c6475bebec980e17b 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 3.1E-74 T 14-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 RY45_12930 824001679bfb658c6475bebec980e17b 214 SUPERFAMILY SSF52540 1 212 2.93E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12930 824001679bfb658c6475bebec980e17b 214 Pfam PF00406 Adenylate kinase 5 185 6.8E-58 T 14-10-2018 RY45_12930 824001679bfb658c6475bebec980e17b 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 14-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RY45_12930 824001679bfb658c6475bebec980e17b 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 53.043 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RY45_02715 b813dde29bec1c36d2524f84d0119ebb 508 Pfam PF00924 Mechanosensitive ion channel 129 315 5.9E-27 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RY45_02715 b813dde29bec1c36d2524f84d0119ebb 508 Pfam PF00027 Cyclic nucleotide-binding domain 376 458 5.1E-16 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_02715 b813dde29bec1c36d2524f84d0119ebb 508 Gene3D G3DSA:2.60.120.10 325 486 3.0E-28 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_02715 b813dde29bec1c36d2524f84d0119ebb 508 SUPERFAMILY SSF51206 347 480 2.09E-27 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like RY45_02715 b813dde29bec1c36d2524f84d0119ebb 508 Gene3D G3DSA:2.30.30.60 173 219 3.1E-7 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RY45_02715 b813dde29bec1c36d2524f84d0119ebb 508 SUPERFAMILY SSF50182 156 218 1.63E-13 T 14-10-2018 IPR010920 LSM domain superfamily RY45_02715 b813dde29bec1c36d2524f84d0119ebb 508 SMART SM00100 354 471 1.3E-12 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_11225 e40d633943acdd2a30fab3ce9a326c14 195 SUPERFAMILY SSF81901 33 172 4.58E-32 T 14-10-2018 RY45_11225 e40d633943acdd2a30fab3ce9a326c14 195 Pfam PF08238 Sel1 repeat 58 93 4.4E-5 T 14-10-2018 IPR006597 Sel1-like repeat RY45_11225 e40d633943acdd2a30fab3ce9a326c14 195 Pfam PF08238 Sel1 repeat 131 165 1.9E-4 T 14-10-2018 IPR006597 Sel1-like repeat RY45_11225 e40d633943acdd2a30fab3ce9a326c14 195 Pfam PF08238 Sel1 repeat 95 129 1.8E-10 T 14-10-2018 IPR006597 Sel1-like repeat RY45_11225 e40d633943acdd2a30fab3ce9a326c14 195 Gene3D G3DSA:1.25.40.10 26 184 2.2E-39 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_11225 e40d633943acdd2a30fab3ce9a326c14 195 SMART SM00671 130 165 4.2E-4 T 14-10-2018 IPR006597 Sel1-like repeat RY45_11225 e40d633943acdd2a30fab3ce9a326c14 195 SMART SM00671 58 93 8.5E-6 T 14-10-2018 IPR006597 Sel1-like repeat RY45_11225 e40d633943acdd2a30fab3ce9a326c14 195 SMART SM00671 94 129 5.2E-10 T 14-10-2018 IPR006597 Sel1-like repeat RY45_17650 261863c9bb839c250e1dbdaadbbdbff9 352 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 260 345 8.0E-28 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_17650 261863c9bb839c250e1dbdaadbbdbff9 352 SMART SM00382 58 259 1.9E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17650 261863c9bb839c250e1dbdaadbbdbff9 352 ProSitePatterns PS00211 ABC transporters family signature. 182 196 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17650 261863c9bb839c250e1dbdaadbbdbff9 352 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 261 326 6.6E-22 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_17650 261863c9bb839c250e1dbdaadbbdbff9 352 Pfam PF00005 ABC transporter 49 209 2.1E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17650 261863c9bb839c250e1dbdaadbbdbff9 352 SUPERFAMILY SSF52540 58 340 1.66E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17650 261863c9bb839c250e1dbdaadbbdbff9 352 Gene3D G3DSA:3.40.50.300 27 351 1.7E-105 T 14-10-2018 RY45_14395 c011387522107b40590dce6ea2039ce8 118 PIRSF PIRSF021239 1 114 1.6E-57 T 14-10-2018 IPR007437 Protein of unknown function DUF486 RY45_14395 c011387522107b40590dce6ea2039ce8 118 Pfam PF04342 Putative member of DMT superfamily (DUF486) 8 111 1.5E-47 T 14-10-2018 IPR007437 Protein of unknown function DUF486 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 14-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 Pfam PF00186 Dihydrofolate reductase 2 162 4.0E-64 T 14-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 PIRSF PIRSF000194 1 163 1.9E-65 T 14-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 SUPERFAMILY SSF53597 1 163 1.44E-63 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 Gene3D G3DSA:3.40.430.10 1 163 9.5E-62 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 PRINTS PR00070 Dihydrofolate reductase signature 28 36 1.7E-14 T 14-10-2018 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 PRINTS PR00070 Dihydrofolate reductase signature 14 24 1.7E-14 T 14-10-2018 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 PRINTS PR00070 Dihydrofolate reductase signature 94 108 1.7E-14 T 14-10-2018 RY45_17400 1405bf3322ba9fc3b96fe5eebafaaf90 163 PRINTS PR00070 Dihydrofolate reductase signature 41 52 1.7E-14 T 14-10-2018 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 SUPERFAMILY SSF55979 246 367 3.14E-38 T 14-10-2018 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 SMART SM00480 17 363 2.9E-145 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 3.8E-107 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 2.1E-36 T 14-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 SUPERFAMILY SSF55979 127 245 9.71E-27 T 14-10-2018 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 PIRSF PIRSF000804 1 367 2.1E-113 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 SUPERFAMILY SSF55979 1 118 1.62E-27 T 14-10-2018 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 132 244 3.0E-34 T 14-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 Gene3D G3DSA:3.10.150.10 125 248 8.1E-35 T 14-10-2018 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 Gene3D G3DSA:3.10.150.10 249 367 1.4E-40 T 14-10-2018 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 246 366 6.1E-41 T 14-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RY45_00010 83b9b95c7613d9a7f1e6764737442972 367 Gene3D G3DSA:3.10.150.10 1 123 1.7E-40 T 14-10-2018 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 SUPERFAMILY SSF56655 11 267 2.62E-73 T 14-10-2018 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 7 259 37.716 T 14-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 214 238 6.3E-11 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 182 203 6.3E-11 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 86 102 6.3E-11 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 6.3E-11 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 6.3E-11 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 217 231 - T 14-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 Gene3D G3DSA:3.40.190.80 157 261 2.6E-28 T 14-10-2018 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 9 257 9.1E-89 T 14-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 Pfam PF00459 Inositol monophosphatase family 13 247 2.1E-51 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RY45_03360 57a1a67cc3a02d1f896eb03c217ce415 270 Gene3D G3DSA:3.30.540.10 8 156 2.6E-42 T 14-10-2018 RY45_15970 dcdb3ae85061b9ecb761fcd673db4db2 304 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 5 50 1.7E-6 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RY45_15970 dcdb3ae85061b9ecb761fcd673db4db2 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 269 7.0E-18 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_15970 dcdb3ae85061b9ecb761fcd673db4db2 304 Gene3D G3DSA:1.10.3720.10 60 274 9.6E-15 T 14-10-2018 IPR035906 MetI-like superfamily RY45_15970 dcdb3ae85061b9ecb761fcd673db4db2 304 SUPERFAMILY SSF161098 68 253 3.01E-17 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03050 f4e5854d6a02cb86577af9ea47d3287f 844 Gene3D G3DSA:2.60.40.2610 676 766 1.1E-11 T 14-10-2018 RY45_03050 f4e5854d6a02cb86577af9ea47d3287f 844 Gene3D G3DSA:3.10.20.410 36 160 7.1E-17 T 14-10-2018 RY45_03050 f4e5854d6a02cb86577af9ea47d3287f 844 Pfam PF13954 PapC N-terminal domain 38 184 2.1E-34 T 14-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 RY45_03050 f4e5854d6a02cb86577af9ea47d3287f 844 Gene3D G3DSA:2.60.40.3110 270 358 1.3E-29 T 14-10-2018 RY45_03050 f4e5854d6a02cb86577af9ea47d3287f 844 Pfam PF00577 Outer membrane usher protein 200 761 6.2E-166 T 14-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 RY45_03050 f4e5854d6a02cb86577af9ea47d3287f 844 Gene3D G3DSA:2.60.40.2070 770 844 5.8E-21 T 14-10-2018 RY45_03050 f4e5854d6a02cb86577af9ea47d3287f 844 SUPERFAMILY SSF141729 36 158 5.49E-27 T 14-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 RY45_03050 f4e5854d6a02cb86577af9ea47d3287f 844 Pfam PF13953 PapC C-terminal domain 771 827 1.4E-12 T 14-10-2018 IPR025949 PapC-like, C-terminal domain RY45_15060 c274abf6cf6cc08a521a84663699a53f 213 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_15060 c274abf6cf6cc08a521a84663699a53f 213 SUPERFAMILY SSF46689 1 78 2.26E-19 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_15060 c274abf6cf6cc08a521a84663699a53f 213 SUPERFAMILY SSF48498 84 202 8.58E-14 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_15060 c274abf6cf6cc08a521a84663699a53f 213 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 201 9.9E-19 T 14-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 RY45_15060 c274abf6cf6cc08a521a84663699a53f 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 2.7E-15 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_15060 c274abf6cf6cc08a521a84663699a53f 213 Gene3D G3DSA:1.10.357.10 1 208 1.3E-54 T 14-10-2018 RY45_15060 c274abf6cf6cc08a521a84663699a53f 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 4.9E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_15060 c274abf6cf6cc08a521a84663699a53f 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 4.9E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_03355 5e1c4a8aba61626f108df2f56532504f 202 Gene3D G3DSA:3.90.79.10 24 202 8.3E-46 T 14-10-2018 RY45_03355 5e1c4a8aba61626f108df2f56532504f 202 Pfam PF00293 NUDIX domain 63 159 3.0E-12 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_03355 5e1c4a8aba61626f108df2f56532504f 202 SUPERFAMILY SSF55811 19 198 1.03E-37 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_10050 15d3d0efbbc9c12068abf134db047bcf 162 Pfam PF02674 Colicin V production protein 4 142 1.1E-37 T 14-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RY45_11200 711eb9673d390dc0633346696776b828 755 Pfam PF02867 Ribonucleotide reductase, barrel domain 221 661 7.1E-112 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 SUPERFAMILY SSF51998 220 738 3.66E-168 T 14-10-2018 RY45_11200 711eb9673d390dc0633346696776b828 755 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 597 619 - T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 Pfam PF02867 Ribonucleotide reductase, barrel domain 674 729 2.6E-7 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 Gene3D G3DSA:3.20.70.20 76 739 2.5E-157 T 14-10-2018 RY45_11200 711eb9673d390dc0633346696776b828 755 SUPERFAMILY SSF48168 8 219 7.32E-76 T 14-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 296 315 9.1E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 509 531 9.1E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 431 442 9.1E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 471 494 9.1E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 608 635 9.1E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 PRINTS PR01183 Ribonucleotide reductase large chain signature 537 560 9.1E-38 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 143 733 6.8E-177 T 14-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 140 217 7.4E-14 T 14-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_11200 711eb9673d390dc0633346696776b828 755 Pfam PF03477 ATP cone domain 4 90 3.0E-17 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RY45_18230 11ffeb360454e89321f954f8c73332ae 305 Gene3D G3DSA:3.40.50.300 1 233 3.6E-65 T 14-10-2018 RY45_18230 11ffeb360454e89321f954f8c73332ae 305 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_18230 11ffeb360454e89321f954f8c73332ae 305 SUPERFAMILY SSF52540 3 231 6.18E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18230 11ffeb360454e89321f954f8c73332ae 305 Pfam PF00005 ABC transporter 20 164 1.5E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_18230 11ffeb360454e89321f954f8c73332ae 305 SMART SM00382 29 212 8.7E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 SMART SM00486 172 577 2.4E-71 T 14-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 ProSitePatterns PS00116 DNA polymerase family B signature. 565 573 - T 14-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 Gene3D G3DSA:2.40.50.590 16 165 2.9E-33 T 14-10-2018 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 SUPERFAMILY SSF53098 15 413 2.45E-79 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 Pfam PF03104 DNA polymerase family B, exonuclease domain 202 320 4.2E-14 T 14-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 563 571 1.7E-10 T 14-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 511 523 1.7E-10 T 14-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 439 452 1.7E-10 T 14-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 Pfam PF00136 DNA polymerase family B 402 760 1.2E-40 T 14-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 Gene3D G3DSA:1.10.132.60 665 809 2.5E-59 T 14-10-2018 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 Gene3D G3DSA:3.90.1600.10 479 658 4.5E-52 T 14-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 Gene3D G3DSA:3.90.1600.10 372 469 1.1E-30 T 14-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 SUPERFAMILY SSF56672 409 803 4.56E-117 T 14-10-2018 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 Gene3D G3DSA:3.30.420.10 175 370 1.4E-67 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_12290 2c49a5dd6236a69e68ead002eb0472b2 809 Gene3D G3DSA:3.30.70.2250 57 124 2.9E-33 T 14-10-2018 RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 314 325 - T 14-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 315 327 3.1E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 412 429 3.1E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 219 233 3.1E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 365 381 3.1E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 248 258 3.1E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 SUPERFAMILY SSF48013 1 146 6.67E-37 T 14-10-2018 IPR035926 NusB-like superfamily RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 4 430 1.4E-152 T 14-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 Gene3D G3DSA:1.10.287.730 143 169 1.4E-12 T 14-10-2018 RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 Gene3D G3DSA:1.10.940.10 1 137 2.1E-44 T 14-10-2018 IPR035926 NusB-like superfamily RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 SUPERFAMILY SSF53335 137 430 1.4E-74 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 Pfam PF01189 16S rRNA methyltransferase RsmB/F 237 427 1.7E-70 T 14-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 Gene3D G3DSA:3.40.50.150 228 430 2.8E-68 T 14-10-2018 RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 Pfam PF01029 NusB family 1 123 8.0E-27 T 14-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RY45_01560 dd625a1902562e8ddbb5b4e81ad5541d 430 Gene3D G3DSA:3.30.70.1170 170 227 6.8E-18 T 14-10-2018 RY45_17105 3ffe6de86c4542915e62284d7e0cbce7 299 Gene3D G3DSA:3.30.1330.60 134 284 1.5E-44 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_17105 3ffe6de86c4542915e62284d7e0cbce7 299 SUPERFAMILY SSF103088 165 282 3.01E-30 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_17105 3ffe6de86c4542915e62284d7e0cbce7 299 Pfam PF00691 OmpA family 178 276 2.0E-15 T 14-10-2018 IPR006665 OmpA-like domain RY45_17105 3ffe6de86c4542915e62284d7e0cbce7 299 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 5 54 2.5E-17 T 14-10-2018 IPR025713 Motility protein B, N-terminal domain RY45_03040 842a9d2e2cfb1530cbf33d1a08d080da 171 Gene3D G3DSA:2.60.40.1090 34 171 7.6E-36 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 RY45_03040 842a9d2e2cfb1530cbf33d1a08d080da 171 Pfam PF00419 Fimbrial protein 24 170 2.6E-18 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 RY45_03040 842a9d2e2cfb1530cbf33d1a08d080da 171 SUPERFAMILY SSF49401 22 171 1.39E-37 T 14-10-2018 IPR008966 Adhesion domain superfamily RY45_09765 ac0defb2b35d315a861a9c74739fd8af 233 Gene3D G3DSA:3.40.50.720 4 233 2.3E-24 T 14-10-2018 RY45_09765 ac0defb2b35d315a861a9c74739fd8af 233 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 190 2.2E-6 T 14-10-2018 RY45_09765 ac0defb2b35d315a861a9c74739fd8af 233 SUPERFAMILY SSF51735 4 233 1.98E-25 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_10700 ed5ce905d155cba2a80c3179ff0d6a77 188 SUPERFAMILY SSF55811 16 182 1.22E-35 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_10700 ed5ce905d155cba2a80c3179ff0d6a77 188 Gene3D G3DSA:3.90.79.10 9 185 2.0E-46 T 14-10-2018 RY45_10700 ed5ce905d155cba2a80c3179ff0d6a77 188 Pfam PF00293 NUDIX domain 29 143 3.3E-14 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_10700 ed5ce905d155cba2a80c3179ff0d6a77 188 ProSitePatterns PS01293 Nudix CoA signature. 45 65 - T 14-10-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918|Reactome: R-HSA-9033241 RY45_00855 4ff0ac1ed94ded541eb6c7a961c5f19e 528 SUPERFAMILY SSF55604 442 517 8.24E-19 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_00855 4ff0ac1ed94ded541eb6c7a961c5f19e 528 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 410 502 9.7E-23 T 14-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RY45_00855 4ff0ac1ed94ded541eb6c7a961c5f19e 528 TIGRFAM TIGR02005 PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component 2 516 9.9E-262 T 14-10-2018 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component GO:0008982|GO:0009401 RY45_00855 4ff0ac1ed94ded541eb6c7a961c5f19e 528 Pfam PF00367 phosphotransferase system, EIIB 446 475 3.8E-13 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_00855 4ff0ac1ed94ded541eb6c7a961c5f19e 528 Gene3D G3DSA:3.30.1360.60 439 519 2.9E-24 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_00855 4ff0ac1ed94ded541eb6c7a961c5f19e 528 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 455 472 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_00855 4ff0ac1ed94ded541eb6c7a961c5f19e 528 Pfam PF02378 Phosphotransferase system, EIIC 10 346 7.8E-69 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_08910 af5165e11520c1311198504cc8f3eb6d 122 SUPERFAMILY SSF54593 1 118 1.61E-23 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_08910 af5165e11520c1311198504cc8f3eb6d 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 118 4.5E-9 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_08910 af5165e11520c1311198504cc8f3eb6d 122 Gene3D G3DSA:3.10.180.10 6 121 2.4E-31 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_08495 e51a3fab5fa64cdf0da76e542b96ee14 281 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 63 267 5.3E-10 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RY45_08495 e51a3fab5fa64cdf0da76e542b96ee14 281 SUPERFAMILY SSF56219 60 274 9.95E-24 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_08495 e51a3fab5fa64cdf0da76e542b96ee14 281 Gene3D G3DSA:3.60.10.10 57 278 1.7E-16 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_20510 528f3949a9afaff22c05eadf4ce1f179 95 Gene3D G3DSA:3.30.160.100 1 95 2.7E-37 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like RY45_20510 528f3949a9afaff22c05eadf4ce1f179 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 2.0E-28 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RY45_20510 528f3949a9afaff22c05eadf4ce1f179 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 4.1E-34 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RY45_20510 528f3949a9afaff22c05eadf4ce1f179 95 SUPERFAMILY SSF69754 1 95 1.96E-35 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like RY45_13695 92d5444c83da88c29e54931c19a3a14a 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 3.5E-26 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_13695 92d5444c83da88c29e54931c19a3a14a 137 Gene3D G3DSA:3.10.180.10 1 131 7.1E-49 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13695 92d5444c83da88c29e54931c19a3a14a 137 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 133 4.1E-67 T 14-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 RY45_13695 92d5444c83da88c29e54931c19a3a14a 137 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 14-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 RY45_13695 92d5444c83da88c29e54931c19a3a14a 137 SUPERFAMILY SSF54593 1 128 9.13E-37 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 SUPERFAMILY SSF53807 41 297 1.65E-48 T 14-10-2018 RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 60 78 9.7E-22 T 14-10-2018 RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 213 231 9.7E-22 T 14-10-2018 RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 189 204 9.7E-22 T 14-10-2018 RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 278 291 9.7E-22 T 14-10-2018 RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 91 106 9.7E-22 T 14-10-2018 RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 Pfam PF01497 Periplasmic binding protein 43 276 1.7E-23 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 Gene3D G3DSA:3.40.50.1980 130 300 5.8E-57 T 14-10-2018 RY45_22205 068cf54dfc74828e9a71b9a672d29455 307 Gene3D G3DSA:3.40.50.1980 38 127 2.8E-22 T 14-10-2018 RY45_21630 948003850b08d600f71e4f28c01e45a7 334 Pfam PF02719 Polysaccharide biosynthesis protein 7 279 4.5E-102 T 14-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RY45_21630 948003850b08d600f71e4f28c01e45a7 334 TIGRFAM TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 1 327 1.6E-165 T 14-10-2018 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) KEGG: 00520+4.2.1.115|MetaCyc: PWY-6143|MetaCyc: PWY-7330|MetaCyc: PWY-7331|MetaCyc: PWY-7332|MetaCyc: PWY-7719 RY45_21630 948003850b08d600f71e4f28c01e45a7 334 Gene3D G3DSA:3.90.25.30 167 314 3.3E-134 T 14-10-2018 RY45_21630 948003850b08d600f71e4f28c01e45a7 334 SUPERFAMILY SSF51735 1 270 2.4E-47 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21630 948003850b08d600f71e4f28c01e45a7 334 Gene3D G3DSA:3.40.50.720 4 311 3.3E-134 T 14-10-2018 RY45_18690 4c70fc1b077cd2a4b24cb1e3611d03dc 669 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 471 632 3.8E-43 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_18690 4c70fc1b077cd2a4b24cb1e3611d03dc 669 Gene3D G3DSA:1.10.287.950 337 669 9.7E-65 T 14-10-2018 RY45_18690 4c70fc1b077cd2a4b24cb1e3611d03dc 669 SUPERFAMILY SSF58104 360 669 5.75E-68 T 14-10-2018 RY45_18690 4c70fc1b077cd2a4b24cb1e3611d03dc 669 SMART SM00283 407 668 3.7E-58 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_18690 4c70fc1b077cd2a4b24cb1e3611d03dc 669 Pfam PF00672 HAMP domain 338 388 6.9E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_18690 4c70fc1b077cd2a4b24cb1e3611d03dc 669 SMART SM00304 338 392 9.0E-13 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_07995 8fcf8f5d643a1c1847a1890bc721e22f 242 Gene3D G3DSA:3.30.2350.10 19 240 6.8E-62 T 14-10-2018 RY45_07995 8fcf8f5d643a1c1847a1890bc721e22f 242 SUPERFAMILY SSF55120 23 239 1.69E-55 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_07995 8fcf8f5d643a1c1847a1890bc721e22f 242 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 74 88 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_07995 8fcf8f5d643a1c1847a1890bc721e22f 242 Pfam PF00849 RNA pseudouridylate synthase 36 191 1.4E-25 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 94 3.6E-11 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 127 213 2.4E-19 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 231 567 1.9E-140 T 14-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 SUPERFAMILY SSF52794 124 225 4.19E-37 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 Pfam PF02378 Phosphotransferase system, EIIC 248 511 2.0E-17 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 SUPERFAMILY SSF52794 4 103 7.72E-23 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 Gene3D G3DSA:3.40.50.2300 113 225 6.4E-40 T 14-10-2018 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 126 209 2.5E-38 T 14-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 RY45_11135 80d5b137a03ec916379c2b6219e8e0b3 578 Gene3D G3DSA:3.40.50.2300 1 103 9.8E-19 T 14-10-2018 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.1E-51 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 Pfam PF00453 Ribosomal protein L20 3 109 4.0E-49 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 Gene3D G3DSA:1.10.1900.20 56 118 3.9E-29 T 14-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 4.8E-42 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 4.8E-42 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 4.8E-42 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.605 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 SUPERFAMILY SSF74731 2 117 2.35E-50 T 14-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 Gene3D G3DSA:1.10.720.90 2 55 1.9E-24 T 14-10-2018 RY45_11245 02413d27ae704e4d0bb4eabb55f38a65 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 2.0E-14 T 14-10-2018 RY45_03665 ef8e76428b45da40238b477c7d84ea3d 177 Gene3D G3DSA:3.40.30.10 17 177 4.5E-42 T 14-10-2018 RY45_03665 ef8e76428b45da40238b477c7d84ea3d 177 SUPERFAMILY SSF52833 29 175 6.19E-39 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_03665 ef8e76428b45da40238b477c7d84ea3d 177 PRINTS PR01011 Glutathione peroxidase family signature 42 59 1.0E-9 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_03665 ef8e76428b45da40238b477c7d84ea3d 177 PRINTS PR01011 Glutathione peroxidase family signature 77 93 1.0E-9 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_03665 ef8e76428b45da40238b477c7d84ea3d 177 PRINTS PR01011 Glutathione peroxidase family signature 137 146 1.0E-9 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_03665 ef8e76428b45da40238b477c7d84ea3d 177 PIRSF PIRSF000303 1 176 3.5E-52 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_03665 ef8e76428b45da40238b477c7d84ea3d 177 Pfam PF00255 Glutathione peroxidase 29 128 3.8E-25 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_21575 2ae2f077173ee5904bd483c6d18b7653 453 SUPERFAMILY SSF53383 14 441 3.02E-128 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_21575 2ae2f077173ee5904bd483c6d18b7653 453 PIRSF PIRSF000521 10 446 4.1E-28 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_21575 2ae2f077173ee5904bd483c6d18b7653 453 Gene3D G3DSA:3.40.640.10 66 341 9.3E-187 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_21575 2ae2f077173ee5904bd483c6d18b7653 453 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 291 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_21575 2ae2f077173ee5904bd483c6d18b7653 453 Pfam PF00202 Aminotransferase class-III 32 438 2.8E-95 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_21575 2ae2f077173ee5904bd483c6d18b7653 453 Gene3D G3DSA:3.90.1150.10 12 444 9.3E-187 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_20690 c52f864f80723956d72ea8e9b296cf23 292 Gene3D G3DSA:1.20.1510.10 4 206 4.0E-63 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RY45_20690 c52f864f80723956d72ea8e9b296cf23 292 Gene3D G3DSA:3.30.70.1350 207 292 3.4E-25 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RY45_20690 c52f864f80723956d72ea8e9b296cf23 292 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 5 290 3.0E-73 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RY45_20690 c52f864f80723956d72ea8e9b296cf23 292 SUPERFAMILY SSF160240 211 290 3.01E-19 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RY45_20690 c52f864f80723956d72ea8e9b296cf23 292 Pfam PF01545 Cation efflux family 9 207 1.5E-48 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RY45_20690 c52f864f80723956d72ea8e9b296cf23 292 SUPERFAMILY SSF161111 3 208 4.71E-57 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RY45_20690 c52f864f80723956d72ea8e9b296cf23 292 Pfam PF16916 Dimerisation domain of Zinc Transporter 213 288 6.5E-21 T 14-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain RY45_11980 29ba3bc25e6cbe54473e3ae93890ec43 258 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 4 156 6.6E-22 T 14-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RY45_11980 29ba3bc25e6cbe54473e3ae93890ec43 258 Gene3D G3DSA:3.30.390.50 163 254 2.4E-9 T 14-10-2018 RY45_11980 29ba3bc25e6cbe54473e3ae93890ec43 258 SUPERFAMILY SSF55447 164 253 5.1E-11 T 14-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RY45_11980 29ba3bc25e6cbe54473e3ae93890ec43 258 Gene3D G3DSA:3.30.465.10 3 158 6.9E-25 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_11980 29ba3bc25e6cbe54473e3ae93890ec43 258 TIGRFAM TIGR03312 Se_sel_red_FAD: probable selenate reductase, FAD-binding subunit 2 258 5.6E-142 T 14-10-2018 IPR017698 Probable selenate reductase, FAD-binding subunit RY45_11980 29ba3bc25e6cbe54473e3ae93890ec43 258 SMART SM01092 161 251 7.7E-9 T 14-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RY45_11980 29ba3bc25e6cbe54473e3ae93890ec43 258 SUPERFAMILY SSF56176 4 155 4.5E-23 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_17565 889957fc1bc57c7ea085c93cd9c9af6c 273 Gene3D G3DSA:3.40.50.300 2 266 1.0E-63 T 14-10-2018 RY45_17565 889957fc1bc57c7ea085c93cd9c9af6c 273 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17565 889957fc1bc57c7ea085c93cd9c9af6c 273 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 25 251 1.3E-101 T 14-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 RY45_17565 889957fc1bc57c7ea085c93cd9c9af6c 273 SUPERFAMILY SSF52540 5 232 3.59E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17565 889957fc1bc57c7ea085c93cd9c9af6c 273 Pfam PF00005 ABC transporter 24 163 1.0E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17565 889957fc1bc57c7ea085c93cd9c9af6c 273 SMART SM00382 33 213 3.0E-20 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_16980 ad265e214e571ae29c822442d54cd48a 602 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 417 538 8.8E-27 T 14-10-2018 IPR025299 CstA, C-terminal domain RY45_16980 ad265e214e571ae29c822442d54cd48a 602 Pfam PF02554 Carbon starvation protein CstA 4 368 7.2E-133 T 14-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 SUPERFAMILY SSF46626 55 237 3.2E-28 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 37 83 3.2E-20 T 14-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 Gene3D G3DSA:1.20.58.1490 1 93 4.4E-29 T 14-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 Gene3D G3DSA:1.10.760.10 145 320 1.0E-71 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 158 230 4.4E-12 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 243 317 7.5E-10 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 PRINTS PR00605 Class IC cytochrome C signature 295 317 4.7E-5 T 14-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 PRINTS PR00605 Class IC cytochrome C signature 166 177 4.7E-5 T 14-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 SUPERFAMILY SSF46626 243 326 2.95E-22 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 117 323 1.1E-57 T 14-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 PIRSF PIRSF000006 1 324 3.7E-101 T 14-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III RY45_11375 7af0556d3e6f5e21213aabf1ce72eec2 329 Gene3D G3DSA:1.10.760.10 211 297 1.0E-71 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_18305 e2034d540bfbfb03f80f67753dcf91ed 542 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 314 487 9.8E-37 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_18305 e2034d540bfbfb03f80f67753dcf91ed 542 Gene3D G3DSA:3.30.450.20 3 117 5.7E-25 T 14-10-2018 RY45_18305 e2034d540bfbfb03f80f67753dcf91ed 542 Pfam PF08447 PAS fold 31 115 6.0E-18 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_18305 e2034d540bfbfb03f80f67753dcf91ed 542 SUPERFAMILY SSF55785 20 115 1.27E-26 T 14-10-2018 IPR035965 PAS domain superfamily RY45_18305 e2034d540bfbfb03f80f67753dcf91ed 542 SUPERFAMILY SSF58104 266 522 2.62E-66 T 14-10-2018 RY45_18305 e2034d540bfbfb03f80f67753dcf91ed 542 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 19 112 5.9E-12 T 14-10-2018 IPR000014 PAS domain RY45_18305 e2034d540bfbfb03f80f67753dcf91ed 542 Gene3D G3DSA:1.10.287.950 232 528 2.8E-59 T 14-10-2018 RY45_18305 e2034d540bfbfb03f80f67753dcf91ed 542 SMART SM00283 260 521 7.1E-65 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_18320 4c4a8fe13d7b571bd6a9983c4fbfc535 574 SUPERFAMILY SSF116726 198 282 1.02E-14 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_18320 4c4a8fe13d7b571bd6a9983c4fbfc535 574 Gene3D G3DSA:3.30.70.1450 206 287 4.9E-11 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_18320 4c4a8fe13d7b571bd6a9983c4fbfc535 574 Gene3D G3DSA:3.30.70.1450 290 354 4.2E-13 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_18320 4c4a8fe13d7b571bd6a9983c4fbfc535 574 Pfam PF02080 TrkA-C domain 210 277 6.5E-7 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_18320 4c4a8fe13d7b571bd6a9983c4fbfc535 574 Pfam PF02080 TrkA-C domain 293 349 4.8E-10 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_18320 4c4a8fe13d7b571bd6a9983c4fbfc535 574 Pfam PF03600 Citrate transporter 19 518 1.5E-27 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 RY45_18320 4c4a8fe13d7b571bd6a9983c4fbfc535 574 SUPERFAMILY SSF116726 290 350 4.84E-14 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_15960 f2a652f1502cea21cbd19b6b6c1ed3c3 561 Gene3D G3DSA:3.10.105.10 274 520 5.7E-180 T 14-10-2018 RY45_15960 f2a652f1502cea21cbd19b6b6c1ed3c3 561 SUPERFAMILY SSF53850 30 532 8.69E-105 T 14-10-2018 RY45_15960 f2a652f1502cea21cbd19b6b6c1ed3c3 561 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 85 107 - T 14-10-2018 IPR023765 Solute-binding protein family 5, conserved site RY45_15960 f2a652f1502cea21cbd19b6b6c1ed3c3 561 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 462 1.2E-74 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_15960 f2a652f1502cea21cbd19b6b6c1ed3c3 561 Gene3D G3DSA:3.90.76.10 67 173 5.7E-180 T 14-10-2018 RY45_15960 f2a652f1502cea21cbd19b6b6c1ed3c3 561 PIRSF PIRSF002741 3 537 4.8E-71 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_15960 f2a652f1502cea21cbd19b6b6c1ed3c3 561 Gene3D G3DSA:3.40.190.10 47 544 5.7E-180 T 14-10-2018 RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 1.9E-17 T 14-10-2018 IPR000362 Fumarate lyase family RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 1.9E-17 T 14-10-2018 IPR000362 Fumarate lyase family RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 1.9E-17 T 14-10-2018 IPR000362 Fumarate lyase family RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.9E-17 T 14-10-2018 IPR000362 Fumarate lyase family RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 SUPERFAMILY SSF48557 4 446 7.23E-105 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 Gene3D G3DSA:1.10.40.30 382 445 4.6E-159 T 14-10-2018 RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 1.6E-52 T 14-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 Pfam PF00206 Lyase 14 312 7.7E-74 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 454 1.5E-147 T 14-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 Gene3D G3DSA:1.10.275.10 1 117 1.3E-49 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal RY45_07445 7f7892f9a0b8a48351f51696b064db3d 456 Gene3D G3DSA:1.20.200.10 118 446 4.6E-159 T 14-10-2018 RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 148 367 3.3E-48 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 Gene3D G3DSA:2.60.40.3500 15 125 5.2E-26 T 14-10-2018 RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 Pfam PF11741 AMIN domain 24 124 5.4E-21 T 14-10-2018 IPR021731 AMIN domain RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 Gene3D G3DSA:3.10.350.10 461 521 3.4E-13 T 14-10-2018 IPR036779 LysM domain superfamily RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 SUPERFAMILY SSF53187 145 370 3.77E-52 T 14-10-2018 RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 Gene3D G3DSA:3.40.630.40 136 378 9.6E-72 T 14-10-2018 RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 SMART SM00257 476 519 8.3E-13 T 14-10-2018 IPR018392 LysM domain RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 SUPERFAMILY SSF54106 475 519 8.11E-9 T 14-10-2018 RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 Pfam PF01476 LysM domain 477 519 1.9E-10 T 14-10-2018 IPR018392 LysM domain RY45_05100 6f395bc11ab5763a54c5af6fb6808382 521 SMART SM00646 208 367 8.1E-62 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RY45_20935 591f06a324fcc781f4155490654f0b2c 238 SUPERFAMILY SSF55594 153 238 1.57E-20 T 14-10-2018 IPR035895 HPr-like superfamily RY45_20935 591f06a324fcc781f4155490654f0b2c 238 SUPERFAMILY SSF53062 1 125 1.03E-30 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RY45_20935 591f06a324fcc781f4155490654f0b2c 238 Gene3D G3DSA:3.40.50.510 1 128 8.0E-42 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RY45_20935 591f06a324fcc781f4155490654f0b2c 238 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 2 123 6.7E-32 T 14-10-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain RY45_20935 591f06a324fcc781f4155490654f0b2c 238 Pfam PF03610 PTS system fructose IIA component 3 117 3.6E-20 T 14-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RY45_20935 591f06a324fcc781f4155490654f0b2c 238 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 156 231 2.7E-17 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20935 591f06a324fcc781f4155490654f0b2c 238 PRINTS PR00107 Phosphocarrier protein signature 189 204 4.1E-11 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20935 591f06a324fcc781f4155490654f0b2c 238 PRINTS PR00107 Phosphocarrier protein signature 164 180 4.1E-11 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20935 591f06a324fcc781f4155490654f0b2c 238 PRINTS PR00107 Phosphocarrier protein signature 204 221 4.1E-11 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20935 591f06a324fcc781f4155490654f0b2c 238 Pfam PF00381 PTS HPr component phosphorylation site 156 232 6.8E-20 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_20935 591f06a324fcc781f4155490654f0b2c 238 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 164 171 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RY45_20935 591f06a324fcc781f4155490654f0b2c 238 Gene3D G3DSA:3.30.1340.10 154 238 3.6E-22 T 14-10-2018 IPR035895 HPr-like superfamily RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 146 1.1E-43 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 152 300 2.7E-32 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 SUPERFAMILY SSF53671 4 304 7.14E-99 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 261 266 3.4E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 78 87 3.4E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 283 297 3.4E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.4E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 132 149 3.4E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 223 232 3.4E-36 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 302 1.2E-116 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 Gene3D G3DSA:3.40.50.1370 8 301 2.8E-115 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 304 37.689 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 290 5.8E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 257 266 5.8E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 133 144 5.8E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 5.8E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21320 51ff2fd6125f3efce012593ba35d798d 306 Gene3D G3DSA:3.40.50.1370 133 289 2.8E-115 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_12175 638ebcea656b85de42bcf18d24512d8c 88 SUPERFAMILY SSF55229 34 84 1.7E-16 T 14-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 RY45_12175 638ebcea656b85de42bcf18d24512d8c 88 Gene3D G3DSA:3.30.1070.10 21 81 8.9E-29 T 14-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 RY45_12175 638ebcea656b85de42bcf18d24512d8c 88 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 87 20.562 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 RY45_12175 638ebcea656b85de42bcf18d24512d8c 88 Pfam PF03776 Septum formation topological specificity factor MinE 15 82 2.7E-26 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 RY45_12175 638ebcea656b85de42bcf18d24512d8c 88 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 82 1.4E-31 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 SUPERFAMILY SSF55874 289 450 1.07E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 SMART SM00304 183 236 3.2E-12 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 SUPERFAMILY SSF158472 183 235 7.45E-13 T 14-10-2018 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 Gene3D G3DSA:1.10.8.500 183 231 3.4E-16 T 14-10-2018 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 449 3.0E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 SMART SM00387 342 450 4.6E-24 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 3.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 3.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 3.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 3.0E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 Gene3D G3DSA:3.30.565.10 305 451 5.3E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 297 1.5E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 SUPERFAMILY SSF47384 220 297 5.89E-15 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 Gene3D G3DSA:1.10.287.130 232 298 2.0E-15 T 14-10-2018 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 SMART SM00388 237 299 1.9E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_01225 e4663d3483efb9fa4337e0cb0d4551c0 451 Pfam PF00672 HAMP domain 183 232 3.5E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_20555 60b6e01251a81857410426f8933c6a66 163 Pfam PF02470 MlaD protein 39 117 5.0E-19 T 14-10-2018 IPR003399 Mce/MlaD RY45_20555 60b6e01251a81857410426f8933c6a66 163 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 4 153 9.5E-54 T 14-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 RY45_18750 675c0e6e23010716a4b04fbb4d15b2c6 99 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 95 20.768 T 14-10-2018 IPR003746 Protein of unknown function DUF167 RY45_18750 675c0e6e23010716a4b04fbb4d15b2c6 99 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 7 91 4.3E-28 T 14-10-2018 IPR005228 Conserved hypothetical protein CHP00251 RY45_18750 675c0e6e23010716a4b04fbb4d15b2c6 99 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 82 6.1E-26 T 14-10-2018 IPR003746 Protein of unknown function DUF167 RY45_18750 675c0e6e23010716a4b04fbb4d15b2c6 99 SUPERFAMILY SSF69786 4 96 8.37E-32 T 14-10-2018 IPR036591 YggU-like superfamily RY45_18750 675c0e6e23010716a4b04fbb4d15b2c6 99 Gene3D G3DSA:3.30.1200.10 1 99 4.0E-35 T 14-10-2018 IPR036591 YggU-like superfamily RY45_18750 675c0e6e23010716a4b04fbb4d15b2c6 99 SMART SM01152 7 83 3.0E-37 T 14-10-2018 IPR003746 Protein of unknown function DUF167 RY45_10625 81b076ea070bbcf0d5cc87b6c94b56c0 510 Gene3D G3DSA:3.40.190.10 57 291 9.3E-49 T 14-10-2018 RY45_10625 81b076ea070bbcf0d5cc87b6c94b56c0 510 Gene3D G3DSA:1.10.530.10 322 495 3.4E-38 T 14-10-2018 RY45_10625 81b076ea070bbcf0d5cc87b6c94b56c0 510 SUPERFAMILY SSF53850 60 305 1.58E-30 T 14-10-2018 RY45_10625 81b076ea070bbcf0d5cc87b6c94b56c0 510 SUPERFAMILY SSF53955 323 480 1.65E-35 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_10625 81b076ea070bbcf0d5cc87b6c94b56c0 510 Gene3D G3DSA:3.40.190.10 159 261 9.3E-49 T 14-10-2018 RY45_10625 81b076ea070bbcf0d5cc87b6c94b56c0 510 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 104 304 3.2E-21 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_10625 81b076ea070bbcf0d5cc87b6c94b56c0 510 SMART SM00062 60 306 6.0E-13 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_10625 81b076ea070bbcf0d5cc87b6c94b56c0 510 Pfam PF01464 Transglycosylase SLT domain 327 438 3.2E-17 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_14010 87a7aec02a9fb131c2b32f81b367cdb6 307 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 38 301 8.5E-56 T 14-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 RY45_14010 87a7aec02a9fb131c2b32f81b367cdb6 307 SUPERFAMILY SSF101801 230 305 3.01E-17 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_14010 87a7aec02a9fb131c2b32f81b367cdb6 307 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 232 300 1.6E-14 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) RY45_14010 87a7aec02a9fb131c2b32f81b367cdb6 307 Gene3D G3DSA:2.30.330.10 219 306 1.1E-25 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_14010 87a7aec02a9fb131c2b32f81b367cdb6 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 234 246 3.7E-9 T 14-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 RY45_14010 87a7aec02a9fb131c2b32f81b367cdb6 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 175 185 3.7E-9 T 14-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 RY45_14010 87a7aec02a9fb131c2b32f81b367cdb6 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 278 295 3.7E-9 T 14-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 RY45_18245 1f92b86ba7b484925cb60c499f75c30b 203 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 5 198 3.7E-60 T 14-10-2018 IPR004507 Flavin prenyltransferase UbiX-like RY45_18245 1f92b86ba7b484925cb60c499f75c30b 203 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 3 200 34.745 T 14-10-2018 IPR004507 Flavin prenyltransferase UbiX-like RY45_18245 1f92b86ba7b484925cb60c499f75c30b 203 Gene3D G3DSA:3.40.50.1950 1 201 9.7E-78 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RY45_18245 1f92b86ba7b484925cb60c499f75c30b 203 SUPERFAMILY SSF52507 3 199 2.88E-57 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RY45_18245 1f92b86ba7b484925cb60c499f75c30b 203 Pfam PF02441 Flavoprotein 4 179 2.9E-24 T 14-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RY45_16465 5ba1da15e80de90270a6b66132da677d 199 Gene3D G3DSA:3.30.70.60 94 198 5.2E-30 T 14-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RY45_16465 5ba1da15e80de90270a6b66132da677d 199 Pfam PF04350 Pilus assembly protein, PilO 49 191 9.8E-49 T 14-10-2018 IPR007445 Pilus assembly protein, PilO RY45_16465 5ba1da15e80de90270a6b66132da677d 199 PIRSF PIRSF016482 1 198 2.6E-53 T 14-10-2018 IPR007445 Pilus assembly protein, PilO RY45_16465 5ba1da15e80de90270a6b66132da677d 199 Gene3D G3DSA:1.10.287.540 57 93 2.0E-7 T 14-10-2018 RY45_21870 a6b3dba7af7c52bb1ea968ce7b437fd6 392 PIRSF PIRSF000484 1 386 5.0E-64 T 14-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 RY45_21870 a6b3dba7af7c52bb1ea968ce7b437fd6 392 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 392 46.239 T 14-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RY45_21870 a6b3dba7af7c52bb1ea968ce7b437fd6 392 SUPERFAMILY SSF51690 116 389 1.49E-86 T 14-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RY45_21870 a6b3dba7af7c52bb1ea968ce7b437fd6 392 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 165 391 1.0E-78 T 14-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 RY45_21870 a6b3dba7af7c52bb1ea968ce7b437fd6 392 Gene3D G3DSA:3.20.140.10 1 391 1.3E-150 T 14-10-2018 RY45_21870 a6b3dba7af7c52bb1ea968ce7b437fd6 392 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 4 390 1.2E-149 T 14-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RY45_21870 a6b3dba7af7c52bb1ea968ce7b437fd6 392 SUPERFAMILY SSF54675 1 134 2.55E-38 T 14-10-2018 RY45_22095 4d2ba71d942d90a4268c5a36f1ded1e8 224 SUPERFAMILY SSF46894 133 222 5.59E-24 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_22095 4d2ba71d942d90a4268c5a36f1ded1e8 224 SUPERFAMILY SSF52172 2 131 3.7E-35 T 14-10-2018 IPR011006 CheY-like superfamily RY45_22095 4d2ba71d942d90a4268c5a36f1ded1e8 224 SMART SM00448 4 114 9.3E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_22095 4d2ba71d942d90a4268c5a36f1ded1e8 224 Pfam PF00072 Response regulator receiver domain 6 114 1.7E-22 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_22095 4d2ba71d942d90a4268c5a36f1ded1e8 224 Gene3D G3DSA:1.10.10.10 131 224 6.3E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_22095 4d2ba71d942d90a4268c5a36f1ded1e8 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 2.1E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_22095 4d2ba71d942d90a4268c5a36f1ded1e8 224 Gene3D G3DSA:3.40.50.2300 1 125 1.1E-29 T 14-10-2018 RY45_22095 4d2ba71d942d90a4268c5a36f1ded1e8 224 SMART SM00862 145 221 1.0E-25 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_12010 431cf88854ada1c22a1e0c788bceba78 307 SUPERFAMILY SSF103481 42 142 1.83E-13 T 14-10-2018 RY45_12010 431cf88854ada1c22a1e0c788bceba78 307 Pfam PF00892 EamA-like transporter family 13 140 1.8E-19 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12010 431cf88854ada1c22a1e0c788bceba78 307 Pfam PF00892 EamA-like transporter family 151 288 1.8E-24 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12010 431cf88854ada1c22a1e0c788bceba78 307 SUPERFAMILY SSF103481 188 293 1.83E-14 T 14-10-2018 RY45_01555 290b94af7345b2064654e054ccd8914e 458 Gene3D G3DSA:3.40.50.720 2 139 1.1E-49 T 14-10-2018 RY45_01555 290b94af7345b2064654e054ccd8914e 458 SUPERFAMILY SSF116726 390 451 7.72E-9 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_01555 290b94af7345b2064654e054ccd8914e 458 Gene3D G3DSA:3.30.70.1450 367 458 1.6E-28 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_01555 290b94af7345b2064654e054ccd8914e 458 SUPERFAMILY SSF51735 232 376 9.67E-34 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01555 290b94af7345b2064654e054ccd8914e 458 SUPERFAMILY SSF116726 136 223 3.53E-9 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_01555 290b94af7345b2064654e054ccd8914e 458 SUPERFAMILY SSF51735 1 152 1.01E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01555 290b94af7345b2064654e054ccd8914e 458 Gene3D G3DSA:3.30.70.1450 140 232 2.4E-20 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_01555 290b94af7345b2064654e054ccd8914e 458 Pfam PF02254 TrkA-N domain 3 105 9.6E-29 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RY45_01555 290b94af7345b2064654e054ccd8914e 458 Pfam PF02254 TrkA-N domain 235 350 5.3E-26 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RY45_01555 290b94af7345b2064654e054ccd8914e 458 Pfam PF02080 TrkA-C domain 391 451 4.6E-10 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_01555 290b94af7345b2064654e054ccd8914e 458 Pfam PF02080 TrkA-C domain 156 225 5.3E-10 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_01555 290b94af7345b2064654e054ccd8914e 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 3.1E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RY45_01555 290b94af7345b2064654e054ccd8914e 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 3.1E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RY45_01555 290b94af7345b2064654e054ccd8914e 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 3.1E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RY45_01555 290b94af7345b2064654e054ccd8914e 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 3.1E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RY45_01555 290b94af7345b2064654e054ccd8914e 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 3.1E-34 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RY45_01555 290b94af7345b2064654e054ccd8914e 458 Gene3D G3DSA:3.40.50.720 233 366 1.6E-37 T 14-10-2018 RY45_10295 e2712e3901e8031b21e67aedf3e5bb78 403 Gene3D G3DSA:3.40.47.10 1 252 3.6E-65 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_10295 e2712e3901e8031b21e67aedf3e5bb78 403 SMART SM00825 Beta-ketoacyl synthase 4 403 3.9E-12 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RY45_10295 e2712e3901e8031b21e67aedf3e5bb78 403 SUPERFAMILY SSF53901 1 251 4.61E-64 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_10295 e2712e3901e8031b21e67aedf3e5bb78 403 SUPERFAMILY SSF53901 213 400 7.4E-61 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_10295 e2712e3901e8031b21e67aedf3e5bb78 403 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 358 2.3E-29 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RY45_10295 e2712e3901e8031b21e67aedf3e5bb78 403 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site RY45_10295 e2712e3901e8031b21e67aedf3e5bb78 403 Gene3D G3DSA:3.40.47.10 258 401 5.5E-48 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_10295 e2712e3901e8031b21e67aedf3e5bb78 403 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 244 3.3E-42 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Gene3D G3DSA:1.20.120.1510 460 572 1.1E-31 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Gene3D G3DSA:1.20.120.330 298 453 6.7E-53 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 SUPERFAMILY SSF81301 538 823 3.02E-90 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Pfam PF08335 GlnD PII-uridylyltransferase 310 448 1.2E-42 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Pfam PF08335 GlnD PII-uridylyltransferase 836 929 2.2E-11 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Gene3D G3DSA:3.30.460.10 126 297 9.2E-60 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 39 957 19.359 T 14-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Gene3D G3DSA:3.30.460.100 573 822 3.6E-91 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Gene3D G3DSA:1.20.120.330 823 957 2.7E-38 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 SUPERFAMILY SSF81593 300 449 2.75E-43 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 43 283 1.5E-89 T 14-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 564 816 6.0E-94 T 14-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 SUPERFAMILY SSF81301 36 299 1.04E-86 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 Gene3D G3DSA:1.10.4050.10 12 123 9.9E-23 T 14-10-2018 RY45_04355 1c5a8f7b7efca531f9c157059bd75945 957 SUPERFAMILY SSF81593 828 955 4.16E-29 T 14-10-2018 RY45_21465 7a8e21a652dc3035dd9499ada30b8820 303 Pfam PF03466 LysR substrate binding domain 92 294 1.4E-24 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_21465 7a8e21a652dc3035dd9499ada30b8820 303 Gene3D G3DSA:3.40.190.10 169 265 2.2E-60 T 14-10-2018 RY45_21465 7a8e21a652dc3035dd9499ada30b8820 303 Gene3D G3DSA:3.40.190.10 90 289 2.2E-60 T 14-10-2018 RY45_21465 7a8e21a652dc3035dd9499ada30b8820 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 8.2E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_21465 7a8e21a652dc3035dd9499ada30b8820 303 SUPERFAMILY SSF53850 89 293 6.33E-42 T 14-10-2018 RY45_21465 7a8e21a652dc3035dd9499ada30b8820 303 Gene3D G3DSA:1.10.10.10 1 84 2.5E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21465 7a8e21a652dc3035dd9499ada30b8820 303 SUPERFAMILY SSF46785 2 82 1.36E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_04970 daf40efc7d907255e24007cae55142f7 177 Gene3D G3DSA:3.30.70.260 1 85 1.7E-23 T 14-10-2018 RY45_04970 daf40efc7d907255e24007cae55142f7 177 Gene3D G3DSA:3.30.70.260 94 169 1.4E-9 T 14-10-2018 RY45_04970 daf40efc7d907255e24007cae55142f7 177 SUPERFAMILY SSF55021 1 83 3.29E-16 T 14-10-2018 RY45_04970 daf40efc7d907255e24007cae55142f7 177 Pfam PF13740 ACT domain 3 78 1.4E-24 T 14-10-2018 RY45_04970 daf40efc7d907255e24007cae55142f7 177 PIRSF PIRSF028103 1 168 1.2E-45 T 14-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 RY45_04970 daf40efc7d907255e24007cae55142f7 177 SUPERFAMILY SSF55021 96 166 3.33E-7 T 14-10-2018 RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 Gene3D G3DSA:3.40.190.10 93 292 5.9E-47 T 14-10-2018 RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.1E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 SUPERFAMILY SSF53850 90 298 2.31E-38 T 14-10-2018 RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 Gene3D G3DSA:1.10.10.10 4 89 2.5E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 Pfam PF03466 LysR substrate binding domain 89 296 2.5E-44 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.1E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.1E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.1E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 Gene3D G3DSA:3.40.190.10 165 270 5.9E-47 T 14-10-2018 RY45_19715 d1027bb5b655e4d3429edee3b9d22db1 307 SUPERFAMILY SSF46785 2 113 1.21E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 6.0E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 6.0E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 6.0E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 243 2.6E-59 T 14-10-2018 RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 186 1.1E-4 T 14-10-2018 RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.7E-38 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 Gene3D G3DSA:3.40.50.720 1 244 2.8E-78 T 14-10-2018 RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_04350 6705850ad7fa4fd7b0d2beefffa32383 244 SUPERFAMILY SSF51735 2 243 2.76E-76 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_11620 113c8438291c7c83f52f7064a01104c1 339 Gene3D G3DSA:3.40.718.10 3 338 6.5E-124 T 14-10-2018 RY45_11620 113c8438291c7c83f52f7064a01104c1 339 PIRSF PIRSF002465 2 338 2.2E-122 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 RY45_11620 113c8438291c7c83f52f7064a01104c1 339 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 338 139.939 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 RY45_11620 113c8438291c7c83f52f7064a01104c1 339 SUPERFAMILY SSF53659 5 335 3.0E-103 T 14-10-2018 RY45_11620 113c8438291c7c83f52f7064a01104c1 339 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 334 6.7E-110 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 RY45_11620 113c8438291c7c83f52f7064a01104c1 339 Pfam PF02504 Fatty acid synthesis protein 5 322 1.0E-103 T 14-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 RY45_03280 fa6a05523a7e6d559603a77493715d10 281 PRINTS PR00810 Bacterial general secretion pathway protein C signature 99 108 1.9E-6 T 14-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 RY45_03280 fa6a05523a7e6d559603a77493715d10 281 PRINTS PR00810 Bacterial general secretion pathway protein C signature 233 243 1.9E-6 T 14-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 RY45_03280 fa6a05523a7e6d559603a77493715d10 281 SUPERFAMILY SSF50156 183 277 3.03E-16 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 RY45_03280 fa6a05523a7e6d559603a77493715d10 281 Gene3D G3DSA:2.30.42.10 175 278 2.8E-23 T 14-10-2018 RY45_03280 fa6a05523a7e6d559603a77493715d10 281 Pfam PF11356 Type II secretion system protein C 22 162 9.1E-44 T 14-10-2018 IPR024961 Type II secretion system protein C, N-terminal RY45_03280 fa6a05523a7e6d559603a77493715d10 281 TIGRFAM TIGR01713 typeII_sec_gspC: type II secretion system protein C 20 278 4.2E-70 T 14-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 RY45_03280 fa6a05523a7e6d559603a77493715d10 281 Gene3D G3DSA:2.30.30.830 96 163 3.9E-28 T 14-10-2018 RY45_03280 fa6a05523a7e6d559603a77493715d10 281 ProSitePatterns PS01141 Bacterial type II secretion system protein C signature. 217 243 - T 14-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 RY45_20055 6fea40439120a0b0e1c56e3bbae61ed8 240 Gene3D G3DSA:1.10.3900.10 9 175 3.6E-84 T 14-10-2018 RY45_20055 6fea40439120a0b0e1c56e3bbae61ed8 240 SUPERFAMILY SSF160950 2 240 1.27E-82 T 14-10-2018 IPR036268 ZapD domain superfamily RY45_20055 6fea40439120a0b0e1c56e3bbae61ed8 240 Gene3D G3DSA:2.60.440.10 2 240 3.6E-84 T 14-10-2018 IPR027462 Z ring-associated protein D, C-terminal RY45_20055 6fea40439120a0b0e1c56e3bbae61ed8 240 Hamap MF_01092 Cell division protein ZapD [zapD]. 1 240 29.833 T 14-10-2018 IPR009777 Cell division protein ZapD RY45_20055 6fea40439120a0b0e1c56e3bbae61ed8 240 Pfam PF07072 Cell division protein 15 221 1.3E-74 T 14-10-2018 IPR009777 Cell division protein ZapD RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 57.053 T 14-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 Gene3D G3DSA:2.160.10.10 87 257 4.8E-56 T 14-10-2018 RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 2.0E-12 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 Gene3D G3DSA:1.10.166.10 1 70 5.5E-31 T 14-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 166 5.3E-4 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 1.2E-25 T 14-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 SUPERFAMILY SSF51161 1 256 1.52E-76 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_06280 75782e81573f92c2216ccac79d3c93a4 275 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 273 1.4E-149 T 14-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 RY45_15910 652bb239e90ed37c9cbcc4d25db747ab 153 Pfam PF00583 Acetyltransferase (GNAT) family 47 141 2.0E-14 T 14-10-2018 IPR000182 GNAT domain RY45_15910 652bb239e90ed37c9cbcc4d25db747ab 153 Gene3D G3DSA:3.40.630.30 2 151 3.8E-38 T 14-10-2018 RY45_15910 652bb239e90ed37c9cbcc4d25db747ab 153 SUPERFAMILY SSF55729 1 145 1.45E-28 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_20455 3ef455c2783ed833eefd0f4195e84381 121 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 4 118 1.7E-67 T 14-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 RY45_20455 3ef455c2783ed833eefd0f4195e84381 121 Pfam PF14272 Glycine-rich SFCGS 4 117 1.6E-61 T 14-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 RY45_08685 ee08d1847013134b9664eb02ec9278fd 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 135 311 1.1E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_08685 ee08d1847013134b9664eb02ec9278fd 319 Gene3D G3DSA:1.10.3720.10 111 318 6.9E-55 T 14-10-2018 IPR035906 MetI-like superfamily RY45_08685 ee08d1847013134b9664eb02ec9278fd 319 SUPERFAMILY SSF161098 117 308 2.22E-48 T 14-10-2018 IPR035906 MetI-like superfamily RY45_08685 ee08d1847013134b9664eb02ec9278fd 319 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 117 210 2.0E-25 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_10945 af242e676773965e81cc8ac4028dbf61 418 Pfam PF07687 Peptidase dimerisation domain 218 291 2.0E-8 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain RY45_10945 af242e676773965e81cc8ac4028dbf61 418 SUPERFAMILY SSF53187 4 414 2.78E-55 T 14-10-2018 RY45_10945 af242e676773965e81cc8ac4028dbf61 418 Gene3D G3DSA:3.40.630.10 1 281 1.1E-70 T 14-10-2018 RY45_10945 af242e676773965e81cc8ac4028dbf61 418 Gene3D G3DSA:3.40.630.10 290 417 1.4E-11 T 14-10-2018 RY45_10945 af242e676773965e81cc8ac4028dbf61 418 Pfam PF01546 Peptidase family M20/M25/M40 100 412 1.9E-22 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 RY45_10945 af242e676773965e81cc8ac4028dbf61 418 SUPERFAMILY SSF55031 216 320 6.54E-24 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RY45_10945 af242e676773965e81cc8ac4028dbf61 418 PIRSF PIRSF005962 1 418 5.9E-104 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 RY45_10945 af242e676773965e81cc8ac4028dbf61 418 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 8 402 3.4E-82 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 RY45_07825 1f3746a9d91abf1717135a6daaa08799 64 SUPERFAMILY SSF46575 1 62 3.92E-7 T 14-10-2018 RY45_07825 1f3746a9d91abf1717135a6daaa08799 64 Pfam PF11686 Protein of unknown function (DUF3283) 4 61 3.1E-9 T 14-10-2018 IPR021700 Protein of unknown function DUF3283 RY45_07825 1f3746a9d91abf1717135a6daaa08799 64 Gene3D G3DSA:1.20.58.250 1 64 2.9E-6 T 14-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_13705 3d608bc19a0bd9ac68f34b5a80e42af8 657 Pfam PF08376 Nitrate and nitrite sensing 54 282 1.0E-53 T 14-10-2018 IPR013587 Nitrate/nitrite sensing protein RY45_13705 3d608bc19a0bd9ac68f34b5a80e42af8 657 SUPERFAMILY SSF58104 341 650 4.58E-70 T 14-10-2018 RY45_13705 3d608bc19a0bd9ac68f34b5a80e42af8 657 Gene3D G3DSA:1.10.287.950 326 651 1.2E-64 T 14-10-2018 RY45_13705 3d608bc19a0bd9ac68f34b5a80e42af8 657 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 296 316 7.2E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_13705 3d608bc19a0bd9ac68f34b5a80e42af8 657 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 486 513 7.2E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_13705 3d608bc19a0bd9ac68f34b5a80e42af8 657 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 515 544 7.2E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_13705 3d608bc19a0bd9ac68f34b5a80e42af8 657 SMART SM00283 388 649 6.0E-58 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13705 3d608bc19a0bd9ac68f34b5a80e42af8 657 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 435 616 1.5E-39 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_15860 74bc403578c352449051184b954fd34a 451 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 362 371 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_15860 74bc403578c352449051184b954fd34a 451 SUPERFAMILY SSF52172 11 195 1.57E-40 T 14-10-2018 IPR011006 CheY-like superfamily RY45_15860 74bc403578c352449051184b954fd34a 451 SMART SM00448 11 122 3.1E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15860 74bc403578c352449051184b954fd34a 451 SUPERFAMILY SSF52540 150 379 3.91E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15860 74bc403578c352449051184b954fd34a 451 Pfam PF00072 Response regulator receiver domain 14 122 2.3E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15860 74bc403578c352449051184b954fd34a 451 Pfam PF00158 Sigma-54 interaction domain 150 315 1.4E-65 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_15860 74bc403578c352449051184b954fd34a 451 SUPERFAMILY SSF46689 361 450 3.12E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_15860 74bc403578c352449051184b954fd34a 451 Gene3D G3DSA:1.10.8.60 320 384 6.4E-19 T 14-10-2018 RY45_15860 74bc403578c352449051184b954fd34a 451 SMART SM00382 170 312 2.1E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15860 74bc403578c352449051184b954fd34a 451 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 174 187 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_15860 74bc403578c352449051184b954fd34a 451 Gene3D G3DSA:1.10.10.60 400 447 3.6E-12 T 14-10-2018 RY45_15860 74bc403578c352449051184b954fd34a 451 Pfam PF02954 Bacterial regulatory protein, Fis family 408 448 1.5E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_15860 74bc403578c352449051184b954fd34a 451 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 451 8.2E-5 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_15860 74bc403578c352449051184b954fd34a 451 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 414 431 8.2E-5 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_15860 74bc403578c352449051184b954fd34a 451 Gene3D G3DSA:3.40.50.300 144 319 5.4E-60 T 14-10-2018 RY45_15860 74bc403578c352449051184b954fd34a 451 Gene3D G3DSA:3.40.50.2300 10 143 1.3E-31 T 14-10-2018 RY45_07470 16bf0b6e95203f2cb8a24213734fe5dd 255 Gene3D G3DSA:3.30.1340.10 1 85 1.2E-5 T 14-10-2018 IPR035895 HPr-like superfamily RY45_07470 16bf0b6e95203f2cb8a24213734fe5dd 255 SUPERFAMILY SSF55594 2 79 2.88E-9 T 14-10-2018 IPR035895 HPr-like superfamily RY45_07470 16bf0b6e95203f2cb8a24213734fe5dd 255 SUPERFAMILY SSF55804 123 244 9.03E-24 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_07470 16bf0b6e95203f2cb8a24213734fe5dd 255 PIRSF PIRSF029195 9 253 2.9E-26 T 14-10-2018 IPR016910 Uncharacterised conserved protein UCP029195, PTS-EIIA 2 RY45_07470 16bf0b6e95203f2cb8a24213734fe5dd 255 Pfam PF00381 PTS HPr component phosphorylation site 9 76 1.1E-5 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_07470 16bf0b6e95203f2cb8a24213734fe5dd 255 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 125 242 7.3E-20 T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_07470 16bf0b6e95203f2cb8a24213734fe5dd 255 Gene3D G3DSA:3.40.930.10 119 250 1.2E-21 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_15975 6c14e7ee1602c201ae5a15ca718fffa6 340 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 4.7E-16 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_15975 6c14e7ee1602c201ae5a15ca718fffa6 340 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 320 1.3E-21 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_15975 6c14e7ee1602c201ae5a15ca718fffa6 340 SUPERFAMILY SSF52540 7 255 3.34E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15975 6c14e7ee1602c201ae5a15ca718fffa6 340 SMART SM00382 36 234 1.4E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15975 6c14e7ee1602c201ae5a15ca718fffa6 340 Pfam PF00005 ABC transporter 28 184 4.2E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_15975 6c14e7ee1602c201ae5a15ca718fffa6 340 Gene3D G3DSA:3.40.50.300 5 333 8.6E-93 T 14-10-2018 RY45_15975 6c14e7ee1602c201ae5a15ca718fffa6 340 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_06885 4926da9c1890fd6051062817ebe90b13 517 Pfam PF02743 Cache domain 34 278 6.8E-12 T 14-10-2018 IPR033479 Double Cache domain 1 RY45_06885 4926da9c1890fd6051062817ebe90b13 517 Gene3D G3DSA:3.30.70.270 340 505 1.3E-45 T 14-10-2018 RY45_06885 4926da9c1890fd6051062817ebe90b13 517 SUPERFAMILY SSF103190 176 245 3.92E-6 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_06885 4926da9c1890fd6051062817ebe90b13 517 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 350 506 4.6E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_06885 4926da9c1890fd6051062817ebe90b13 517 Gene3D G3DSA:3.30.450.20 199 236 4.6E-10 T 14-10-2018 RY45_06885 4926da9c1890fd6051062817ebe90b13 517 SUPERFAMILY SSF55073 358 508 2.9E-38 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_06885 4926da9c1890fd6051062817ebe90b13 517 Gene3D G3DSA:3.30.450.20 237 281 4.6E-10 T 14-10-2018 RY45_06885 4926da9c1890fd6051062817ebe90b13 517 Pfam PF00990 Diguanylate cyclase, GGDEF domain 354 504 1.7E-35 T 14-10-2018 IPR000160 GGDEF domain RY45_06885 4926da9c1890fd6051062817ebe90b13 517 SMART SM00267 342 508 2.1E-45 T 14-10-2018 IPR000160 GGDEF domain RY45_19640 f99aae10fa9384561099b294aba66892 196 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 124 186 3.2E-15 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_19640 f99aae10fa9384561099b294aba66892 196 Gene3D G3DSA:3.40.50.1000 7 189 2.0E-49 T 14-10-2018 IPR023214 HAD superfamily RY45_19640 f99aae10fa9384561099b294aba66892 196 Gene3D G3DSA:1.10.150.240 19 89 2.0E-49 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_19640 f99aae10fa9384561099b294aba66892 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 148 168 2.2E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_19640 f99aae10fa9384561099b294aba66892 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 2.2E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_19640 f99aae10fa9384561099b294aba66892 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 175 188 2.2E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_19640 f99aae10fa9384561099b294aba66892 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 130 146 2.2E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_19640 f99aae10fa9384561099b294aba66892 196 SUPERFAMILY SSF56784 6 190 6.62E-51 T 14-10-2018 IPR036412 HAD-like superfamily RY45_19640 f99aae10fa9384561099b294aba66892 196 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 7 186 7.4E-48 T 14-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase RY45_19640 f99aae10fa9384561099b294aba66892 196 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 186 5.0E-32 T 14-10-2018 RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 Pfam PF05594 Haemagluttinin repeat 295 363 0.0084 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 Pfam PF05594 Haemagluttinin repeat 216 291 5.7E-6 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 Pfam PF05594 Haemagluttinin repeat 431 499 0.0032 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 Pfam PF05594 Haemagluttinin repeat 385 427 150.0 T 14-10-2018 IPR008619 Filamentous haemagglutinin repeat RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 SUPERFAMILY SSF51126 41 344 1.03E-62 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 SMART SM00912 47 168 4.4E-47 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 65 163 4.1E-21 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 Pfam PF05860 haemagglutination activity domain 41 166 8.6E-33 T 14-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal RY45_05960 2d3b03ca07967e9be04c6006f177f6e4 588 Gene3D G3DSA:2.160.20.10 33 327 6.8E-101 T 14-10-2018 IPR012334 Pectin lyase fold RY45_00780 ed5e2c28d86b01bf55d55136a0fa2859 489 Gene3D G3DSA:3.40.1670.10 337 454 2.0E-51 T 14-10-2018 RY45_00780 ed5e2c28d86b01bf55d55136a0fa2859 489 Gene3D G3DSA:1.20.5.570 455 489 8.9E-16 T 14-10-2018 RY45_00780 ed5e2c28d86b01bf55d55136a0fa2859 489 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 1.4E-174 T 14-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 RY45_00780 ed5e2c28d86b01bf55d55136a0fa2859 489 SUPERFAMILY SSF50475 3 322 1.49E-123 T 14-10-2018 RY45_00780 ed5e2c28d86b01bf55d55136a0fa2859 489 SUPERFAMILY SSF143968 323 485 2.09E-67 T 14-10-2018 RY45_00780 ed5e2c28d86b01bf55d55136a0fa2859 489 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 72.886 T 14-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 RY45_00780 ed5e2c28d86b01bf55d55136a0fa2859 489 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 431 8.1E-169 T 14-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 RY45_14210 74f29ea140102ebf0293808a00deb67b 311 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 301 3.1E-128 T 14-10-2018 IPR005911 Protein YhcC-like GO:0051536 RY45_14210 74f29ea140102ebf0293808a00deb67b 311 SUPERFAMILY SSF102114 13 263 5.23E-46 T 14-10-2018 RY45_14210 74f29ea140102ebf0293808a00deb67b 311 Pfam PF16199 Radical_SAM C-terminal domain 208 290 1.5E-19 T 14-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 RY45_14210 74f29ea140102ebf0293808a00deb67b 311 SMART SM00729 23 247 4.7E-40 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_14210 74f29ea140102ebf0293808a00deb67b 311 Pfam PF04055 Radical SAM superfamily 43 195 4.8E-15 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_14210 74f29ea140102ebf0293808a00deb67b 311 Gene3D G3DSA:3.80.30.20 9 281 2.8E-18 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RY45_19765 32517449699086aee237fa96b4aa11cf 553 SMART SM00642 14 414 1.1E-152 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_19765 32517449699086aee237fa96b4aa11cf 553 Pfam PF16657 Maltogenic Amylase, C-terminal domain 475 547 1.2E-8 T 14-10-2018 IPR032091 Maltogenic Amylase, C-terminal RY45_19765 32517449699086aee237fa96b4aa11cf 553 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 6 550 9.6E-257 T 14-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 RY45_19765 32517449699086aee237fa96b4aa11cf 553 Gene3D G3DSA:3.20.20.80 1 107 7.3E-47 T 14-10-2018 RY45_19765 32517449699086aee237fa96b4aa11cf 553 SUPERFAMILY SSF51445 4 472 1.74E-155 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_19765 32517449699086aee237fa96b4aa11cf 553 Gene3D G3DSA:3.90.400.10 108 171 6.1E-31 T 14-10-2018 RY45_19765 32517449699086aee237fa96b4aa11cf 553 Gene3D G3DSA:3.20.20.80 172 475 1.9E-111 T 14-10-2018 RY45_19765 32517449699086aee237fa96b4aa11cf 553 Gene3D G3DSA:2.60.40.1180 476 553 2.4E-20 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_19765 32517449699086aee237fa96b4aa11cf 553 SUPERFAMILY SSF51011 475 551 3.16E-19 T 14-10-2018 RY45_19765 32517449699086aee237fa96b4aa11cf 553 Pfam PF00128 Alpha amylase, catalytic domain 29 372 1.2E-122 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_13805 0b4d6ffe771ebce0214f2914d556fdfe 365 Gene3D G3DSA:3.10.180.10 166 363 9.6E-67 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13805 0b4d6ffe771ebce0214f2914d556fdfe 365 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 13 151 1.3E-56 T 14-10-2018 RY45_13805 0b4d6ffe771ebce0214f2914d556fdfe 365 PIRSF PIRSF009283 2 363 1.2E-120 T 14-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RY45_13805 0b4d6ffe771ebce0214f2914d556fdfe 365 Gene3D G3DSA:3.10.180.10 9 163 1.5E-46 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13805 0b4d6ffe771ebce0214f2914d556fdfe 365 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 19 362 1.6E-128 T 14-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RY45_13805 0b4d6ffe771ebce0214f2914d556fdfe 365 SUPERFAMILY SSF54593 12 349 3.8E-77 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13805 0b4d6ffe771ebce0214f2914d556fdfe 365 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 171 282 6.5E-13 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_15270 2d7cf08a214d767c221bfd80fc418ccb 320 Gene3D G3DSA:1.10.287.70 209 320 2.7E-14 T 14-10-2018 RY45_15270 2d7cf08a214d767c221bfd80fc418ccb 320 SUPERFAMILY SSF81324 221 319 7.85E-14 T 14-10-2018 RY45_15270 2d7cf08a214d767c221bfd80fc418ccb 320 Pfam PF07885 Ion channel 230 319 2.3E-11 T 14-10-2018 IPR013099 Potassium channel domain RY45_15270 2d7cf08a214d767c221bfd80fc418ccb 320 Pfam PF00805 Pentapeptide repeats (8 copies) 103 123 0.013 T 14-10-2018 IPR001646 Pentapeptide repeat RY45_15270 2d7cf08a214d767c221bfd80fc418ccb 320 Pfam PF00805 Pentapeptide repeats (8 copies) 77 97 0.004 T 14-10-2018 IPR001646 Pentapeptide repeat RY45_15270 2d7cf08a214d767c221bfd80fc418ccb 320 SUPERFAMILY SSF141571 48 137 1.44E-14 T 14-10-2018 RY45_15270 2d7cf08a214d767c221bfd80fc418ccb 320 Gene3D G3DSA:2.160.20.100 44 157 2.1E-13 T 14-10-2018 RY45_00410 034c2c8f5c0565cc9e2d2a77e0ae9488 119 SUPERFAMILY SSF160719 11 112 8.5E-29 T 14-10-2018 RY45_00410 034c2c8f5c0565cc9e2d2a77e0ae9488 119 Pfam PF04965 Gene 25-like lysozyme 16 97 1.8E-14 T 14-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD RY45_00410 034c2c8f5c0565cc9e2d2a77e0ae9488 119 Gene3D G3DSA:3.10.450.40 5 116 5.7E-21 T 14-10-2018 RY45_11685 2fb6fabc438e13365dd70f85be821d51 360 ProSitePatterns PS01215 Mrp family signature. 202 218 - T 14-10-2018 IPR000808 Mrp, conserved site GO:0005524 RY45_11685 2fb6fabc438e13365dd70f85be821d51 360 SUPERFAMILY SSF117916 4 72 7.52E-7 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RY45_11685 2fb6fabc438e13365dd70f85be821d51 360 Gene3D G3DSA:3.40.50.300 88 334 4.9E-80 T 14-10-2018 RY45_11685 2fb6fabc438e13365dd70f85be821d51 360 Pfam PF01883 Iron-sulfur cluster assembly protein 19 71 3.8E-7 T 14-10-2018 IPR002744 MIP18 family-like RY45_11685 2fb6fabc438e13365dd70f85be821d51 360 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 95 338 9.8E-99 T 14-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RY45_11685 2fb6fabc438e13365dd70f85be821d51 360 Hamap MF_02040 Iron-sulfur cluster carrier protein. 87 339 35.85 T 14-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein RY45_11685 2fb6fabc438e13365dd70f85be821d51 360 SUPERFAMILY SSF52540 91 320 2.53E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17695 a346a4a4077c967df8b647b999d7bc45 211 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 143 210 1.9E-12 T 14-10-2018 IPR006260 TonB/TolA, C-terminal RY45_17695 a346a4a4077c967df8b647b999d7bc45 211 SUPERFAMILY SSF74653 124 208 9.03E-16 T 14-10-2018 RY45_17695 a346a4a4077c967df8b647b999d7bc45 211 Gene3D G3DSA:3.30.1150.10 115 210 2.4E-19 T 14-10-2018 RY45_17695 a346a4a4077c967df8b647b999d7bc45 211 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 135 209 4.2E-16 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 RY45_22170 3e7b4c82d1ba00275bacf83a618d2c70 267 SUPERFAMILY SSF52540 2 255 1.27E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22170 3e7b4c82d1ba00275bacf83a618d2c70 267 Gene3D G3DSA:3.40.50.300 1 266 2.3E-78 T 14-10-2018 RY45_22170 3e7b4c82d1ba00275bacf83a618d2c70 267 PIRSF PIRSF009320 2 98 9.5E-15 T 14-10-2018 RY45_22170 3e7b4c82d1ba00275bacf83a618d2c70 267 PIRSF PIRSF009320 88 259 2.6E-8 T 14-10-2018 RY45_22170 3e7b4c82d1ba00275bacf83a618d2c70 267 Pfam PF13614 AAA domain 2 178 8.4E-64 T 14-10-2018 IPR025669 AAA domain RY45_17180 3e284f152991ecff51a6a5df35026588 217 SUPERFAMILY SSF63380 93 197 7.48E-33 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_17180 3e284f152991ecff51a6a5df35026588 217 Gene3D G3DSA:2.40.30.20 1 89 1.6E-26 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_17180 3e284f152991ecff51a6a5df35026588 217 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 200 1.4E-63 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17180 3e284f152991ecff51a6a5df35026588 217 PIRSF PIRSF000498 1 211 3.7E-76 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17180 3e284f152991ecff51a6a5df35026588 217 SUPERFAMILY SSF63380 1 89 4.76E-24 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_17180 3e284f152991ecff51a6a5df35026588 217 Pfam PF00677 Lumazine binding domain 100 184 5.2E-25 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17180 3e284f152991ecff51a6a5df35026588 217 Pfam PF00677 Lumazine binding domain 3 87 1.9E-21 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17180 3e284f152991ecff51a6a5df35026588 217 Gene3D G3DSA:2.40.30.20 102 205 2.3E-34 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_14345 6ab827e7005b3ace54dac6ace9044134 200 SUPERFAMILY SSF100950 8 198 1.33E-57 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_14345 6ab827e7005b3ace54dac6ace9044134 200 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 9 192 1.0E-53 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RY45_14345 6ab827e7005b3ace54dac6ace9044134 200 Gene3D G3DSA:3.40.50.10420 2 198 1.4E-57 T 14-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RY45_14345 6ab827e7005b3ace54dac6ace9044134 200 PIRSF PIRSF006806 6 195 8.9E-38 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RY45_14345 6ab827e7005b3ace54dac6ace9044134 200 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 9 192 5.3E-46 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 Gene3D G3DSA:3.30.1330.40 287 417 8.6E-31 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 Gene3D G3DSA:3.30.1330.40 2 133 1.1E-35 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 SUPERFAMILY SSF55298 146 280 5.5E-29 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 SUPERFAMILY SSF55298 293 415 2.98E-30 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 Gene3D G3DSA:3.30.1330.40 144 278 3.9E-29 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 Pfam PF01042 Endoribonuclease L-PSP 307 411 2.5E-23 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 Pfam PF01042 Endoribonuclease L-PSP 14 128 4.4E-24 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 Pfam PF01042 Endoribonuclease L-PSP 173 272 2.0E-20 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 11 128 2.2E-31 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 RY45_16095 334f65ff8e84932ff130e2176e4bbbe0 421 SUPERFAMILY SSF55298 9 136 7.07E-34 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_11735 9c5af7e81fdb0c9fd7f5f70e5f04030c 366 SMART SM00450 4 134 3.0E-11 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_11735 9c5af7e81fdb0c9fd7f5f70e5f04030c 366 Gene3D G3DSA:3.40.250.10 10 135 5.8E-30 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_11735 9c5af7e81fdb0c9fd7f5f70e5f04030c 366 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 18 348 5.7E-104 T 14-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 RY45_11735 9c5af7e81fdb0c9fd7f5f70e5f04030c 366 SUPERFAMILY SSF52821 16 156 5.46E-18 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_11735 9c5af7e81fdb0c9fd7f5f70e5f04030c 366 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 3 364 51.673 T 14-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 RY45_11735 9c5af7e81fdb0c9fd7f5f70e5f04030c 366 SUPERFAMILY SSF52540 147 282 1.74E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02570 cb8b0a2a77f19795a7f2257904e89f74 301 SUPERFAMILY SSF55073 146 292 1.18E-42 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_02570 cb8b0a2a77f19795a7f2257904e89f74 301 Pfam PF08448 PAS fold 14 131 6.0E-8 T 14-10-2018 IPR013656 PAS fold-4 RY45_02570 cb8b0a2a77f19795a7f2257904e89f74 301 SMART SM00267 130 293 6.6E-51 T 14-10-2018 IPR000160 GGDEF domain RY45_02570 cb8b0a2a77f19795a7f2257904e89f74 301 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 137 291 9.6E-42 T 14-10-2018 IPR000160 GGDEF domain RY45_02570 cb8b0a2a77f19795a7f2257904e89f74 301 Gene3D G3DSA:3.30.70.270 139 295 1.9E-48 T 14-10-2018 RY45_02570 cb8b0a2a77f19795a7f2257904e89f74 301 Pfam PF00990 Diguanylate cyclase, GGDEF domain 142 289 1.1E-38 T 14-10-2018 IPR000160 GGDEF domain RY45_02570 cb8b0a2a77f19795a7f2257904e89f74 301 Gene3D G3DSA:3.30.450.20 3 138 1.9E-9 T 14-10-2018 RY45_02570 cb8b0a2a77f19795a7f2257904e89f74 301 SUPERFAMILY SSF55785 6 83 8.19E-7 T 14-10-2018 IPR035965 PAS domain superfamily RY45_05085 c96c178910dfe844583984df5a73971c 375 Pfam PF08331 Domain of unknown function (DUF1730) 61 139 9.8E-23 T 14-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 RY45_05085 c96c178910dfe844583984df5a73971c 375 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 6 315 50.531 T 14-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 RY45_05085 c96c178910dfe844583984df5a73971c 375 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_05085 c96c178910dfe844583984df5a73971c 375 Pfam PF13484 4Fe-4S double cluster binding domain 192 256 7.3E-19 T 14-10-2018 RY45_05085 c96c178910dfe844583984df5a73971c 375 SUPERFAMILY SSF54862 188 286 8.37E-16 T 14-10-2018 RY45_05085 c96c178910dfe844583984df5a73971c 375 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 13 348 1.3E-148 T 14-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 SUPERFAMILY SSF55785 190 300 3.84E-10 T 14-10-2018 IPR035965 PAS domain superfamily RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 Pfam PF00158 Sigma-54 interaction domain 324 485 7.2E-34 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 Gene3D G3DSA:3.40.50.300 313 489 4.6E-41 T 14-10-2018 RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 Gene3D G3DSA:3.30.450.20 208 312 4.4E-16 T 14-10-2018 RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 Gene3D G3DSA:1.10.10.60 576 618 9.1E-13 T 14-10-2018 RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 SUPERFAMILY SSF52540 324 560 1.12E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 SUPERFAMILY SSF46689 529 622 6.27E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 Gene3D G3DSA:1.10.8.60 490 565 3.3E-15 T 14-10-2018 RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 SMART SM00091 198 264 1.0E-5 T 14-10-2018 IPR000014 PAS domain RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 Gene3D G3DSA:3.30.450.40 3 185 1.4E-52 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 Pfam PF02954 Bacterial regulatory protein, Fis family 579 618 1.1E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_20925 fe8b37ddbaf8908814bee7757c483fef 629 Pfam PF00989 PAS fold 199 305 6.8E-9 T 14-10-2018 IPR013767 PAS fold GO:0006355 RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 10 101 9.2E-16 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 Gene3D G3DSA:3.20.20.80 132 564 2.1E-171 T 14-10-2018 RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 SUPERFAMILY SSF51445 130 560 1.62E-125 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 SMART SM00642 155 558 3.2E-10 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 Gene3D G3DSA:2.60.40.1180 581 674 1.3E-14 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 SUPERFAMILY SSF51011 580 681 6.47E-18 T 14-10-2018 RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 Gene3D G3DSA:2.60.40.10 1 131 1.3E-34 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 6 652 1.3E-202 T 14-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 SUPERFAMILY SSF81296 6 144 9.8E-36 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_10905 989b8650c605bb76970e9a8469b7ba06 687 Pfam PF00128 Alpha amylase, catalytic domain 175 294 2.0E-13 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 31.594 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 PRINTS PR00061 Ribosomal protein L19 signature 34 63 2.2E-42 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 PRINTS PR00061 Ribosomal protein L19 signature 88 113 2.2E-42 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 PRINTS PR00061 Ribosomal protein L19 signature 4 33 2.2E-42 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 Pfam PF01245 Ribosomal protein L19 4 113 1.4E-50 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 PIRSF PIRSF002191 1 115 6.1E-50 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 14-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 Gene3D G3DSA:2.30.30.790 2 115 4.7E-14 T 14-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 SUPERFAMILY SSF50104 2 114 7.62E-47 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily RY45_03795 7ecdd585780c5a373c9655e832c8b670 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 2.7E-51 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_18905 480721965e1f4ede53c8fb243b0280e7 262 Pfam PF01026 TatD related DNase 4 254 7.5E-63 T 14-10-2018 IPR001130 TatD family GO:0016788 RY45_18905 480721965e1f4ede53c8fb243b0280e7 262 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RY45_18905 480721965e1f4ede53c8fb243b0280e7 262 PIRSF PIRSF005902 1 258 3.0E-63 T 14-10-2018 IPR001130 TatD family GO:0016788 RY45_18905 480721965e1f4ede53c8fb243b0280e7 262 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RY45_18905 480721965e1f4ede53c8fb243b0280e7 262 SUPERFAMILY SSF51556 3 255 3.72E-75 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_18905 480721965e1f4ede53c8fb243b0280e7 262 Gene3D G3DSA:3.20.20.140 1 256 2.5E-80 T 14-10-2018 RY45_04510 e422ccad9d3cbb8f35f683a3e66a734c 235 Gene3D G3DSA:2.40.50.140 2 74 2.9E-30 T 14-10-2018 RY45_04510 e422ccad9d3cbb8f35f683a3e66a734c 235 SUPERFAMILY SSF57863 82 213 1.44E-11 T 14-10-2018 IPR037278 ARFGAP/RecO-like zinc finger RY45_04510 e422ccad9d3cbb8f35f683a3e66a734c 235 SUPERFAMILY SSF50249 3 72 1.08E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_04510 e422ccad9d3cbb8f35f683a3e66a734c 235 Gene3D G3DSA:1.20.1440.120 77 234 1.1E-46 T 14-10-2018 RY45_04510 e422ccad9d3cbb8f35f683a3e66a734c 235 Pfam PF11967 Recombination protein O N terminal 3 72 2.4E-23 T 14-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal RY45_04510 e422ccad9d3cbb8f35f683a3e66a734c 235 Pfam PF02565 Recombination protein O C terminal 81 225 1.7E-22 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RY45_04510 e422ccad9d3cbb8f35f683a3e66a734c 235 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 227 5.8E-29 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RY45_04510 e422ccad9d3cbb8f35f683a3e66a734c 235 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 21.607 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RY45_03470 87d99a6fd2b7d066a4b86511cf2607ad 288 SUPERFAMILY SSF161098 25 275 6.64E-57 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03470 87d99a6fd2b7d066a4b86511cf2607ad 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 277 7.0E-25 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_03470 87d99a6fd2b7d066a4b86511cf2607ad 288 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 17 279 6.4E-121 T 14-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 RY45_03470 87d99a6fd2b7d066a4b86511cf2607ad 288 Gene3D G3DSA:1.10.3720.10 24 281 1.3E-67 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03470 87d99a6fd2b7d066a4b86511cf2607ad 288 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 22 277 3.6E-94 T 14-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 Gene3D G3DSA:2.40.110.10 194 317 5.5E-94 T 14-10-2018 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 Gene3D G3DSA:1.20.140.10 318 463 5.5E-94 T 14-10-2018 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 Pfam PF09317 Domain of unknown function (DUF1974) 472 756 6.9E-111 T 14-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 318 459 1.9E-9 T 14-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 Gene3D G3DSA:1.10.540.10 80 193 5.5E-94 T 14-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 SUPERFAMILY SSF56645 77 313 1.7E-47 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 80 190 4.9E-16 T 14-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 SUPERFAMILY SSF47203 318 470 1.21E-20 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RY45_07135 372c19c63b57ea9f2e37a82168cbd390 774 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 195 295 4.1E-11 T 14-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RY45_06110 af34c02d80532f63fd075480cb1faa06 409 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 408 36.753 T 14-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 RY45_06110 af34c02d80532f63fd075480cb1faa06 409 PIRSF PIRSF016055 1 409 1.6E-197 T 14-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 RY45_06110 af34c02d80532f63fd075480cb1faa06 409 Pfam PF03116 NQR2, RnfD, RnfE family 41 401 6.1E-107 T 14-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 RY45_06110 af34c02d80532f63fd075480cb1faa06 409 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 4 404 1.3E-192 T 14-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 137 191 1.8E-21 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 180 7.2E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 168 7.2E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 152 7.2E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 Gene3D G3DSA:3.40.50.12740 2 195 1.5E-54 T 14-10-2018 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 SMART SM00421 135 192 2.2E-23 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 SUPERFAMILY SSF46894 130 193 1.09E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 SMART SM00448 2 112 3.8E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 SUPERFAMILY SSF52172 1 127 2.28E-27 T 14-10-2018 IPR011006 CheY-like superfamily RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 Pfam PF00072 Response regulator receiver domain 4 113 1.5E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_08710 a68864ed5dbe83ec4094927ece78a3d2 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 152 179 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_08385 7080837c67dbe7d10fb206c5e428fac1 200 Gene3D G3DSA:1.20.120.1760 2 198 1.2E-21 T 14-10-2018 RY45_08385 7080837c67dbe7d10fb206c5e428fac1 200 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 89 4.1E-9 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RY45_08385 7080837c67dbe7d10fb206c5e428fac1 200 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 89 - T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RY45_06920 222d53066c5dc48f5a0c7faabbe0ee44 176 SUPERFAMILY SSF109854 9 155 5.68E-30 T 14-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RY45_06920 222d53066c5dc48f5a0c7faabbe0ee44 176 Gene3D G3DSA:1.20.120.450 3 157 4.6E-26 T 14-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RY45_06920 222d53066c5dc48f5a0c7faabbe0ee44 176 Pfam PF05163 DinB family 1 161 3.5E-19 T 14-10-2018 IPR007837 DNA damage-inducible protein DinB RY45_06210 492572dbfa8ff541093f9cda1148a760 282 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 24 133 1.0E-48 T 14-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RY45_06210 492572dbfa8ff541093f9cda1148a760 282 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 282 162.12 T 14-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RY45_06210 492572dbfa8ff541093f9cda1148a760 282 TIGRFAM TIGR03138 QueF: queuine synthase 14 282 1.7E-124 T 14-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RY45_06210 492572dbfa8ff541093f9cda1148a760 282 Gene3D G3DSA:3.30.1130.10 145 282 4.8E-59 T 14-10-2018 RY45_06210 492572dbfa8ff541093f9cda1148a760 282 SUPERFAMILY SSF55620 186 266 1.04E-8 T 14-10-2018 RY45_06210 492572dbfa8ff541093f9cda1148a760 282 PIRSF PIRSF004750 9 282 1.3E-123 T 14-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RY45_06210 492572dbfa8ff541093f9cda1148a760 282 Gene3D G3DSA:3.30.1130.10 24 140 9.7E-45 T 14-10-2018 RY45_06210 492572dbfa8ff541093f9cda1148a760 282 Pfam PF14489 QueF-like protein 196 268 3.0E-25 T 14-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RY45_03990 2e65d097cf9354456460217baef580b6 149 Gene3D G3DSA:3.40.630.30 1 148 3.0E-43 T 14-10-2018 RY45_03990 2e65d097cf9354456460217baef580b6 149 Pfam PF13673 Acetyltransferase (GNAT) domain 46 147 2.0E-15 T 14-10-2018 IPR000182 GNAT domain RY45_03990 2e65d097cf9354456460217baef580b6 149 SUPERFAMILY SSF55729 1 146 3.43E-33 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 14-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 14-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 5.5E-136 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 SUPERFAMILY SSF55931 102 468 1.57E-136 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 5 468 6.4E-207 T 14-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 SUPERFAMILY SSF54368 3 100 2.35E-36 T 14-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 SMART SM01230 102 379 2.7E-146 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 2.2E-31 T 14-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 14-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 Gene3D G3DSA:3.10.20.70 2 104 5.2E-40 T 14-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RY45_01670 32f62f10bfb86771e30dcd79a2c0bb56 469 Gene3D G3DSA:3.30.590.10 105 457 9.3E-147 T 14-10-2018 RY45_07790 2435e9b02b8af40a56f6563cfd9673a8 139 Gene3D G3DSA:1.10.3790.10 1 139 3.3E-53 T 14-10-2018 IPR036619 NinB superfamily RY45_07790 2435e9b02b8af40a56f6563cfd9673a8 139 Pfam PF05772 NinB protein 1 120 5.7E-52 T 14-10-2018 IPR008711 Recombinase NinB RY45_07790 2435e9b02b8af40a56f6563cfd9673a8 139 SUPERFAMILY SSF103370 1 133 3.79E-53 T 14-10-2018 IPR036619 NinB superfamily RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 Pfam PF00795 Carbon-nitrogen hydrolase 10 240 2.0E-21 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 Pfam PF02540 NAD synthase 264 512 4.3E-71 T 14-10-2018 IPR022310 NAD/GMP synthase RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 SUPERFAMILY SSF56317 7 242 1.28E-55 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 TIGRFAM TIGR00552 nadE: NAD+ synthetase 266 511 1.2E-59 T 14-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 Gene3D G3DSA:3.60.110.10 1 264 7.7E-82 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 SUPERFAMILY SSF52402 250 520 1.5E-77 T 14-10-2018 RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 Gene3D G3DSA:3.40.50.620 265 539 1.4E-112 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 5 537 27.964 T 14-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 PIRSF PIRSF006630 240 539 2.0E-123 T 14-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RY45_03945 758580865b97f96c9d6d7e6902ffae22 540 PIRSF PIRSF006630 2 255 2.8E-72 T 14-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RY45_13635 527f13468bf3f742d925aaf227c2fc00 491 Pfam PF03606 C4-dicarboxylate anaerobic carrier 13 485 1.7E-120 T 14-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 RY45_09255 b240d71599ce5b9dbb15bdb19faf835c 802 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 80 798 2.5E-219 T 14-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_09255 b240d71599ce5b9dbb15bdb19faf835c 802 SUPERFAMILY SSF56601 247 662 2.29E-89 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_09255 b240d71599ce5b9dbb15bdb19faf835c 802 Gene3D G3DSA:3.40.710.10 294 644 5.4E-69 T 14-10-2018 RY45_09255 b240d71599ce5b9dbb15bdb19faf835c 802 Pfam PF00912 Transglycosylase 92 265 6.2E-48 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_09255 b240d71599ce5b9dbb15bdb19faf835c 802 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 720 796 2.1E-6 T 14-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_09255 b240d71599ce5b9dbb15bdb19faf835c 802 Pfam PF00905 Penicillin binding protein transpeptidase domain 341 558 3.1E-13 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RY45_09255 b240d71599ce5b9dbb15bdb19faf835c 802 Gene3D G3DSA:1.10.3810.10 83 277 5.6E-51 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_09255 b240d71599ce5b9dbb15bdb19faf835c 802 SUPERFAMILY SSF53955 79 297 4.22E-60 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 Pfam PF16189 Creatinase/Prolidase N-terminal domain 151 312 3.8E-32 T 14-10-2018 RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 Gene3D G3DSA:3.90.230.10 306 600 1.4E-100 T 14-10-2018 RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 Pfam PF01321 Creatinase/Prolidase N-terminal domain 10 141 2.9E-16 T 14-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 Pfam PF16188 C-terminal region of peptidase_M24 541 598 1.1E-23 T 14-10-2018 IPR032416 Peptidase M24, C-terminal domain RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 Gene3D G3DSA:3.40.350.10 150 298 1.8E-24 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 Gene3D G3DSA:3.40.350.10 4 149 4.8E-39 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 Pfam PF00557 Metallopeptidase family M24 315 532 1.5E-45 T 14-10-2018 IPR000994 Peptidase M24 RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 SUPERFAMILY SSF53092 8 132 8.2E-12 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RY45_03255 261d8d02dbac1fb05d26f8ef4de9122b 600 SUPERFAMILY SSF55920 309 566 1.44E-61 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Gene3D G3DSA:1.10.10.60 99 205 2.6E-22 T 14-10-2018 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 SMART SM01009 225 341 8.3E-47 T 14-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 SMART SM00342 116 199 3.0E-23 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Pfam PF02805 Metal binding domain of Ada 26 89 2.0E-28 T 14-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Pfam PF12833 Helix-turn-helix domain 122 201 6.9E-23 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Gene3D G3DSA:1.10.340.30 342 445 3.8E-23 T 14-10-2018 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Gene3D G3DSA:3.40.10.10 18 91 9.4E-29 T 14-10-2018 IPR035451 Ada-like domain superfamily RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 SMART SM00478 351 496 6.5E-11 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 SUPERFAMILY SSF57884 21 96 5.62E-30 T 14-10-2018 IPR035451 Ada-like domain superfamily RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 348 461 3.6E-5 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 SUPERFAMILY SSF46689 152 201 1.43E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Gene3D G3DSA:3.30.310.20 225 341 2.9E-25 T 14-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Pfam PF06029 AlkA N-terminal domain 225 341 4.9E-30 T 14-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 SUPERFAMILY SSF48150 331 494 2.09E-33 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 SUPERFAMILY SSF55945 225 322 6.59E-23 T 14-10-2018 RY45_05725 da631914f1df19aef0383d4d6ce5e724 521 Gene3D G3DSA:1.10.1670.10 448 500 4.2E-11 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 SUPERFAMILY SSF52172 10 150 1.05E-28 T 14-10-2018 IPR011006 CheY-like superfamily RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 7.6E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 7.6E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 7.6E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 SMART SM00448 7 119 6.7E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 Gene3D G3DSA:3.40.50.2300 3 132 3.0E-33 T 14-10-2018 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 Pfam PF00072 Response regulator receiver domain 11 119 5.9E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 Gene3D G3DSA:1.10.10.10 136 197 3.6E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 SMART SM00421 139 196 7.7E-18 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 SUPERFAMILY SSF46894 129 198 2.24E-18 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_16965 fd02354a62cfc18f1d3b57116b91b070 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 194 1.4E-16 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_11920 43929d808559a10e05b2e28474f029ad 540 SUPERFAMILY SSF56801 16 538 1.96E-136 T 14-10-2018 RY45_11920 43929d808559a10e05b2e28474f029ad 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 529 8.0E-23 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_11920 43929d808559a10e05b2e28474f029ad 540 Gene3D G3DSA:3.30.300.310 442 540 1.6E-34 T 14-10-2018 RY45_11920 43929d808559a10e05b2e28474f029ad 540 Pfam PF00501 AMP-binding enzyme 29 446 1.6E-91 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_11920 43929d808559a10e05b2e28474f029ad 540 Gene3D G3DSA:3.40.50.12780 8 441 1.4E-102 T 14-10-2018 RY45_14315 60e9d19d3d215bf88748701e1d22306b 417 Pfam PF07759 Protein of unknown function (DUF1615) 100 413 8.9E-144 T 14-10-2018 IPR011673 Protein of unknown function DUF1615 RY45_14315 60e9d19d3d215bf88748701e1d22306b 417 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 81 413 4.0E-122 T 14-10-2018 IPR011673 Protein of unknown function DUF1615 RY45_00680 896462e216accf03ce7f2cca8a46ec56 421 Pfam PF07969 Amidohydrolase family 41 399 2.6E-53 T 14-10-2018 IPR013108 Amidohydrolase 3 RY45_00680 896462e216accf03ce7f2cca8a46ec56 421 Gene3D G3DSA:3.20.20.140 51 358 8.3E-178 T 14-10-2018 RY45_00680 896462e216accf03ce7f2cca8a46ec56 421 SUPERFAMILY SSF51556 50 370 1.7E-108 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_00680 896462e216accf03ce7f2cca8a46ec56 421 SUPERFAMILY SSF51338 2 72 2.94E-5 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_00680 896462e216accf03ce7f2cca8a46ec56 421 Gene3D G3DSA:2.30.40.10 5 404 8.3E-178 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_14245 a20d830046c24495a2d8ee980150fbfd 136 Pfam PF12680 SnoaL-like domain 12 107 4.5E-10 T 14-10-2018 IPR037401 SnoaL-like domain RY45_14245 a20d830046c24495a2d8ee980150fbfd 136 Gene3D G3DSA:3.10.450.50 1 135 3.0E-37 T 14-10-2018 RY45_14245 a20d830046c24495a2d8ee980150fbfd 136 SUPERFAMILY SSF54427 4 127 5.09E-36 T 14-10-2018 IPR032710 NTF2-like domain superfamily RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 2.3E-160 T 14-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 Gene3D G3DSA:3.90.1170.30 337 433 2.1E-31 T 14-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 PIRSF PIRSF000478 1 438 1.0E-150 T 14-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 Gene3D G3DSA:1.20.970.10 7 195 6.3E-126 T 14-10-2018 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 350 423 8.6E-23 T 14-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 SMART SM00941 350 424 2.9E-30 T 14-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 SUPERFAMILY SSF52418 72 333 1.7E-88 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 8.6E-20 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 SUPERFAMILY SSF47648 2 70 1.7E-22 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 Pfam PF00591 Glycosyl transferase family, a/b domain 80 309 6.7E-45 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 14-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 SUPERFAMILY SSF54680 337 438 7.46E-31 T 14-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 47.031 T 14-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 5.5E-222 T 14-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 RY45_18885 4fd37d8bd14f835aef1a13f2b761f393 443 Gene3D G3DSA:3.40.1030.10 70 322 6.3E-126 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 PRINTS PR01100 Shikimate kinase family signature 98 115 4.7E-28 T 14-10-2018 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 PRINTS PR01100 Shikimate kinase family signature 59 67 4.7E-28 T 14-10-2018 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 PRINTS PR01100 Shikimate kinase family signature 7 22 4.7E-28 T 14-10-2018 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 PRINTS PR01100 Shikimate kinase family signature 31 44 4.7E-28 T 14-10-2018 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 PRINTS PR01100 Shikimate kinase family signature 77 86 4.7E-28 T 14-10-2018 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 28.546 T 14-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 Pfam PF01202 Shikimate kinase 13 169 1.9E-54 T 14-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 Gene3D G3DSA:3.40.50.300 1 171 7.0E-56 T 14-10-2018 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 14-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RY45_16450 38a3babe24a4742cacab4c2505f92176 172 SUPERFAMILY SSF52540 4 170 1.78E-32 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18465 743a263d8c5597506b776a26f1d6d987 241 SUPERFAMILY SSF51445 92 184 2.59E-6 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_18465 743a263d8c5597506b776a26f1d6d987 241 Pfam PF11340 Protein of unknown function (DUF3142) 89 180 7.8E-19 T 14-10-2018 IPR021488 Protein of unknown function DUF3142 RY45_08565 4d524fdc47dee0a393cadb7edbcbdb28 253 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 4 252 1.3E-72 T 14-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RY45_08565 4d524fdc47dee0a393cadb7edbcbdb28 253 Gene3D G3DSA:3.40.1390.30 98 224 4.4E-86 T 14-10-2018 RY45_08565 4d524fdc47dee0a393cadb7edbcbdb28 253 SUPERFAMILY SSF102705 4 252 3.53E-84 T 14-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily RY45_08565 4d524fdc47dee0a393cadb7edbcbdb28 253 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 237 1.1E-62 T 14-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RY45_08565 4d524fdc47dee0a393cadb7edbcbdb28 253 Gene3D G3DSA:3.40.1390.30 15 237 4.4E-86 T 14-10-2018 RY45_04715 839fec086e0da49b95786086fd466f27 178 Pfam PF01872 RibD C-terminal domain 9 169 4.3E-16 T 14-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RY45_04715 839fec086e0da49b95786086fd466f27 178 Gene3D G3DSA:3.40.430.10 12 176 2.4E-41 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RY45_04715 839fec086e0da49b95786086fd466f27 178 SUPERFAMILY SSF53597 6 177 1.57E-31 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 SMART SM00382 30 224 2.7E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 Gene3D G3DSA:3.40.50.300 1 230 2.4E-72 T 14-10-2018 RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 Pfam PF09383 NIL domain 268 339 6.7E-17 T 14-10-2018 IPR018449 NIL domain RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 SUPERFAMILY SSF52540 1 239 7.62E-82 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 SMART SM00930 265 340 7.0E-26 T 14-10-2018 IPR018449 NIL domain RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 Gene3D G3DSA:3.30.70.260 233 343 1.1E-33 T 14-10-2018 RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 SUPERFAMILY SSF55021 248 343 7.21E-24 T 14-10-2018 RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 Pfam PF00005 ABC transporter 21 169 1.8E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_05065 31d2403d3a087bfa73982f91c69fe3b9 347 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 3.4E-171 T 14-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 270 766 9.7E-83 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Gene3D G3DSA:2.70.150.20 290 402 2.3E-36 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 SUPERFAMILY SSF55008 6 71 1.83E-11 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Gene3D G3DSA:3.30.70.100 11 74 3.0E-11 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 SUPERFAMILY SSF81653 300 397 1.22E-25 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 SUPERFAMILY SSF55008 70 143 3.14E-16 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Pfam PF00122 E1-E2 ATPase 298 477 3.7E-55 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 ProSitePatterns PS01047 Heavy-metal-associated domain. 15 43 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Gene3D G3DSA:3.40.50.1000 478 739 4.4E-78 T 14-10-2018 IPR023214 HAD superfamily RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Gene3D G3DSA:3.30.70.100 75 151 6.2E-17 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00941 Cadmium-transporting ATPase signature 79 88 8.4E-10 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00941 Cadmium-transporting ATPase signature 382 396 8.4E-10 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00941 Cadmium-transporting ATPase signature 363 379 8.4E-10 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00941 Cadmium-transporting ATPase signature 90 111 8.4E-10 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 ProSitePatterns PS01047 Heavy-metal-associated domain. 81 110 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 213 790 1.4E-170 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Gene3D G3DSA:3.40.1110.10 508 618 4.4E-78 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 SUPERFAMILY SSF81665 264 486 3.92E-14 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 499 505 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 643 1.8E-25 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 687 706 1.8E-25 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 497 511 1.8E-25 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 710 722 1.8E-25 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 347 361 1.8E-25 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 611 622 1.8E-25 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Pfam PF00403 Heavy-metal-associated domain 15 71 7.1E-9 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Pfam PF00403 Heavy-metal-associated domain 79 138 1.9E-9 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 232 789 1.5E-178 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 252 789 2.1E-121 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 Pfam PF00702 haloacid dehalogenase-like hydrolase 493 701 2.8E-35 T 14-10-2018 RY45_21920 e59f98ae9cdfef20ad0b4eff69e89276 810 SUPERFAMILY SSF56784 496 787 9.12E-55 T 14-10-2018 IPR036412 HAD-like superfamily RY45_04540 7ae2dae55704e6a496531600bc79ab58 292 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 36 292 1.3E-90 T 14-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 RY45_09475 82372ec89b9ceb7b19e20ed419dd69a8 111 SMART SM01323 19 103 5.7E-38 T 14-10-2018 IPR003849 Preprotein translocase YajC RY45_09475 82372ec89b9ceb7b19e20ed419dd69a8 111 Pfam PF02699 Preprotein translocase subunit 23 100 1.6E-25 T 14-10-2018 IPR003849 Preprotein translocase YajC RY45_09475 82372ec89b9ceb7b19e20ed419dd69a8 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 6.9E-15 T 14-10-2018 IPR003849 Preprotein translocase YajC RY45_09475 82372ec89b9ceb7b19e20ed419dd69a8 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 6.9E-15 T 14-10-2018 IPR003849 Preprotein translocase YajC RY45_09475 82372ec89b9ceb7b19e20ed419dd69a8 111 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 103 6.6E-30 T 14-10-2018 IPR003849 Preprotein translocase YajC RY45_11005 d0e0b5a8df4ffccdc1805517a12ed7e3 203 Pfam PF01965 DJ-1/PfpI family 3 152 4.2E-17 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RY45_11005 d0e0b5a8df4ffccdc1805517a12ed7e3 203 Gene3D G3DSA:3.40.50.880 2 203 1.4E-50 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_11005 d0e0b5a8df4ffccdc1805517a12ed7e3 203 SUPERFAMILY SSF52317 1 178 8.81E-30 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 SUPERFAMILY SSF55874 465 564 3.8E-18 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 SMART SM00387 472 566 6.9E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 SUPERFAMILY SSF158472 178 225 1.07E-5 T 14-10-2018 RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 Gene3D G3DSA:3.30.565.10 433 566 1.6E-25 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 PIRSF PIRSF003167 1 570 6.4E-157 T 14-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 Pfam PF07730 Histidine kinase 367 431 2.9E-17 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 38 126 2.2E-19 T 14-10-2018 IPR029095 NarX-like, N-terminal RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 Gene3D G3DSA:1.10.287.130 174 291 3.3E-5 T 14-10-2018 RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 475 564 1.1E-9 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 Gene3D G3DSA:1.20.120.960 41 148 2.3E-13 T 14-10-2018 RY45_14715 c9e7a89d1f1731487af2319edb7843dc 570 SMART SM00304 176 228 4.6E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 Gene3D G3DSA:3.40.1190.20 56 361 1.8E-74 T 14-10-2018 IPR029056 Ribokinase-like RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 302 315 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 48 1.9E-11 T 14-10-2018 RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 SUPERFAMILY SSF53613 61 359 8.73E-57 T 14-10-2018 IPR029056 Ribokinase-like RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 SUPERFAMILY SSF46785 1 55 2.41E-10 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 Pfam PF00294 pfkB family carbohydrate kinase 60 346 1.8E-45 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 Gene3D G3DSA:1.10.10.10 2 55 4.1E-10 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 6.7E-5 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 6.7E-5 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 6.7E-5 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_17550 03b8acda86f233a52e4b4edae8b4c0d4 363 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 93 117 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 1.3E-66 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 Gene3D G3DSA:3.20.20.10 10 217 4.8E-132 T 14-10-2018 IPR029066 PLP-binding barrel RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 14-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 155 166 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 120 132 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 249 264 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 60 78 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 26 42 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 192 219 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 266 281 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 339 352 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 PRINTS PR00992 Alanine racemase signature 287 304 2.1E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 Hamap MF_01201 Alanine racemase. 1 357 35.477 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 SUPERFAMILY SSF50621 226 357 7.32E-47 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 SUPERFAMILY SSF51419 8 234 3.66E-70 T 14-10-2018 IPR029066 PLP-binding barrel RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 SMART SM01005 233 357 1.0E-65 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 Gene3D G3DSA:2.40.37.10 8 352 4.8E-132 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 TIGRFAM TIGR00492 alr: alanine racemase 3 357 4.5E-126 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_05565 5e59c394a866f0f29dbdd9175ebbb551 357 Pfam PF00842 Alanine racemase, C-terminal domain 233 354 3.0E-41 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 Gene3D G3DSA:3.40.50.300 295 568 1.6E-107 T 14-10-2018 RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 Pfam PF00437 Type II/IV secretion system protein 191 458 1.4E-92 T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 Gene3D G3DSA:3.30.450.90 153 291 7.7E-48 T 14-10-2018 RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 Gene3D G3DSA:3.30.300.160 63 143 1.9E-5 T 14-10-2018 RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 9 567 1.7E-269 T 14-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 SUPERFAMILY SSF160246 5 141 8.89E-30 T 14-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 SUPERFAMILY SSF52540 169 566 5.17E-101 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 42 146 3.8E-15 T 14-10-2018 IPR007831 General secretory system II, protein E, N-terminal RY45_20035 2b8f12824d41997d4134b0feb7a6b9cc 568 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 386 400 - T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_02035 7a3d83f605fbb7955a75117375356175 717 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 38 436 5.5E-105 T 14-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RY45_02035 7a3d83f605fbb7955a75117375356175 717 Gene3D G3DSA:2.130.10.120 107 437 2.2E-258 T 14-10-2018 RY45_02035 7a3d83f605fbb7955a75117375356175 717 Pfam PF00326 Prolyl oligopeptidase family 499 714 5.9E-71 T 14-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RY45_02035 7a3d83f605fbb7955a75117375356175 717 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 509 533 2.4E-54 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_02035 7a3d83f605fbb7955a75117375356175 717 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 483 501 2.4E-54 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_02035 7a3d83f605fbb7955a75117375356175 717 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 567 587 2.4E-54 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_02035 7a3d83f605fbb7955a75117375356175 717 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 625 640 2.4E-54 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_02035 7a3d83f605fbb7955a75117375356175 717 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 643 665 2.4E-54 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_02035 7a3d83f605fbb7955a75117375356175 717 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 537 556 2.4E-54 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_02035 7a3d83f605fbb7955a75117375356175 717 SUPERFAMILY SSF53474 446 696 2.03E-43 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_02035 7a3d83f605fbb7955a75117375356175 717 SUPERFAMILY SSF50993 34 439 5.49E-96 T 14-10-2018 RY45_02035 7a3d83f605fbb7955a75117375356175 717 Gene3D G3DSA:3.40.50.1820 56 711 2.2E-258 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_19470 9f0eebfb0e969a8f01b6ec3cfb18c2b4 148 Pfam PF06853 Protein of unknown function (DUF1249) 29 142 7.8E-43 T 14-10-2018 IPR009659 Protein of unknown function DUF1249 RY45_16495 cefa7a08fb37706907f7ada73c8428e3 211 SUPERFAMILY SSF52833 4 180 2.8E-25 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_16495 cefa7a08fb37706907f7ada73c8428e3 211 Gene3D G3DSA:3.40.30.10 1 210 4.5E-44 T 14-10-2018 RY45_11655 f3c94e8fdd193b6a997414513517c0d0 215 Gene3D G3DSA:3.40.50.1000 7 206 7.4E-53 T 14-10-2018 IPR023214 HAD superfamily RY45_11655 f3c94e8fdd193b6a997414513517c0d0 215 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 89 177 6.1E-10 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_11655 f3c94e8fdd193b6a997414513517c0d0 215 Gene3D G3DSA:1.10.150.240 19 85 7.4E-53 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_11655 f3c94e8fdd193b6a997414513517c0d0 215 SUPERFAMILY SSF56784 4 214 3.07E-56 T 14-10-2018 IPR036412 HAD-like superfamily RY45_11655 f3c94e8fdd193b6a997414513517c0d0 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 185 6.8E-28 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 SUPERFAMILY SSF54211 217 382 1.56E-46 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 SMART SM00433 34 627 2.0E-202 T 14-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 Gene3D G3DSA:3.30.565.10 2 215 1.4E-73 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 627 0.0 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 558 623 1.9E-23 T 14-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 Gene3D G3DSA:3.30.230.10 216 389 7.4E-56 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 Gene3D G3DSA:3.40.50.670 390 626 7.9E-89 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 Pfam PF01751 Toprim domain 413 521 3.5E-12 T 14-10-2018 IPR006171 TOPRIM domain RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 SUPERFAMILY SSF55874 4 215 1.86E-66 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 31 46 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 66 79 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 414 428 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 562 578 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 497 514 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 109 123 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 266 279 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 479 495 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR00418 DNA topoisomerase II family signature 517 529 4.4E-58 T 14-10-2018 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 631 46.64 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 2.1E-123 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 Pfam PF00204 DNA gyrase B 218 384 4.2E-41 T 14-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 SUPERFAMILY SSF56719 388 624 8.11E-76 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 SMART SM00387 27 173 5.2E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 170 2.1E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_19430 59eff1562921d88d52ef54b4c70f8932 631 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 14-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_17215 e218c241d76b40fad90d04e60b821e4c 214 Gene3D G3DSA:1.20.120.1820 4 121 3.4E-17 T 14-10-2018 RY45_17215 e218c241d76b40fad90d04e60b821e4c 214 Gene3D G3DSA:1.20.1280.20 122 210 3.1E-15 T 14-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_17215 e218c241d76b40fad90d04e60b821e4c 214 Hamap MF_01150 Chaperone protein TorD [torD]. 3 204 28.236 T 14-10-2018 IPR023069 Chaperone TorD RY45_17215 e218c241d76b40fad90d04e60b821e4c 214 Pfam PF02613 Nitrate reductase delta subunit 52 173 1.9E-22 T 14-10-2018 IPR020945 DMSO/Nitrate reductase chaperone RY45_17215 e218c241d76b40fad90d04e60b821e4c 214 SUPERFAMILY SSF89155 9 209 6.67E-32 T 14-10-2018 IPR036411 TorD-like superfamily RY45_07990 96f2d5f475877431c1efce304d3f3fa7 251 Gene3D G3DSA:3.40.50.1580 1 251 7.1E-81 T 14-10-2018 RY45_07990 96f2d5f475877431c1efce304d3f3fa7 251 Pfam PF01048 Phosphorylase superfamily 19 226 7.1E-41 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RY45_07990 96f2d5f475877431c1efce304d3f3fa7 251 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 64 79 - T 14-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 RY45_07990 96f2d5f475877431c1efce304d3f3fa7 251 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 4 251 1.4E-119 T 14-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 RY45_07990 96f2d5f475877431c1efce304d3f3fa7 251 SUPERFAMILY SSF53167 4 247 5.76E-75 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RY45_10280 c2dc740ece1cc20fad003e97fd486f0b 450 Pfam PF03606 C4-dicarboxylate anaerobic carrier 2 448 3.5E-120 T 14-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 RY45_10280 c2dc740ece1cc20fad003e97fd486f0b 450 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 55 438 3.6E-154 T 14-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 RY45_16340 20b20c8c53087097bfb1d00d4546b112 241 Pfam PF01048 Phosphorylase superfamily 17 213 6.7E-33 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RY45_16340 20b20c8c53087097bfb1d00d4546b112 241 Gene3D G3DSA:3.40.50.1580 2 241 9.5E-73 T 14-10-2018 RY45_16340 20b20c8c53087097bfb1d00d4546b112 241 SUPERFAMILY SSF53167 3 239 4.32E-62 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RY45_19465 144bb5fcf256a0e3d22249e3fcacefa5 272 SUPERFAMILY SSF56300 14 266 2.89E-58 T 14-10-2018 RY45_19465 144bb5fcf256a0e3d22249e3fcacefa5 272 Gene3D G3DSA:3.60.21.10 2 267 2.0E-71 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_19465 144bb5fcf256a0e3d22249e3fcacefa5 272 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 13 258 39.949 T 14-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 RY45_19465 144bb5fcf256a0e3d22249e3fcacefa5 272 Pfam PF00149 Calcineurin-like phosphoesterase 14 203 1.8E-14 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RY45_19465 144bb5fcf256a0e3d22249e3fcacefa5 272 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 203 258 3.0E-14 T 14-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 RY45_08835 92b421f3f9aa83574d143db27e33ecaf 103 Gene3D G3DSA:3.40.30.10 2 102 1.4E-40 T 14-10-2018 RY45_08835 92b421f3f9aa83574d143db27e33ecaf 103 SUPERFAMILY SSF52833 10 94 7.83E-28 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_08835 92b421f3f9aa83574d143db27e33ecaf 103 Pfam PF10262 Rdx family 12 85 1.8E-31 T 14-10-2018 IPR011893 Selenoprotein, Rdx-type RY45_08835 92b421f3f9aa83574d143db27e33ecaf 103 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 13 84 3.4E-20 T 14-10-2018 IPR011893 Selenoprotein, Rdx-type RY45_12640 3b31720c2fa8b03e654ca98306bf6e74 232 SUPERFAMILY SSF52540 10 228 3.64E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12640 3b31720c2fa8b03e654ca98306bf6e74 232 Gene3D G3DSA:3.40.50.300 8 231 1.7E-62 T 14-10-2018 RY45_12640 3b31720c2fa8b03e654ca98306bf6e74 232 SMART SM00382 39 227 6.5E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_12640 3b31720c2fa8b03e654ca98306bf6e74 232 Pfam PF00005 ABC transporter 30 178 3.1E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_12640 3b31720c2fa8b03e654ca98306bf6e74 232 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_12640 3b31720c2fa8b03e654ca98306bf6e74 232 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 10 228 3.9E-99 T 14-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 RY45_11495 37c7292c13d287da844c1015e7b648e9 394 Pfam PF01734 Patatin-like phospholipase 7 219 9.0E-25 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RY45_11495 37c7292c13d287da844c1015e7b648e9 394 Gene3D G3DSA:3.40.1090.10 143 245 1.0E-15 T 14-10-2018 RY45_11495 37c7292c13d287da844c1015e7b648e9 394 Gene3D G3DSA:3.40.1090.10 2 96 1.1E-12 T 14-10-2018 RY45_11495 37c7292c13d287da844c1015e7b648e9 394 SUPERFAMILY SSF52151 3 333 2.2E-43 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_08435 855dab9eb6b3a180333ba58be737051d 591 Gene3D G3DSA:3.10.20.310 119 206 1.8E-25 T 14-10-2018 RY45_08435 855dab9eb6b3a180333ba58be737051d 591 Pfam PF01103 Surface antigen 298 586 1.1E-31 T 14-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 RY45_08435 855dab9eb6b3a180333ba58be737051d 591 Gene3D G3DSA:2.40.160.50 282 591 2.1E-101 T 14-10-2018 RY45_08435 855dab9eb6b3a180333ba58be737051d 591 Pfam PF17243 POTRA domain TamA domain 1 46 117 4.9E-16 T 14-10-2018 IPR035243 TamA, POTRA domain 1 RY45_08435 855dab9eb6b3a180333ba58be737051d 591 Gene3D G3DSA:3.10.20.310 41 118 4.7E-14 T 14-10-2018 RY45_08435 855dab9eb6b3a180333ba58be737051d 591 Pfam PF07244 Surface antigen variable number repeat 141 199 5.4E-6 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RY45_08435 855dab9eb6b3a180333ba58be737051d 591 Gene3D G3DSA:3.10.20.310 207 281 1.3E-12 T 14-10-2018 RY45_10380 d004d68e414dfa4c9c0566ec49c75d42 339 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 10 336 2.9E-147 T 14-10-2018 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative RY45_10380 d004d68e414dfa4c9c0566ec49c75d42 339 Pfam PF13343 Bacterial extracellular solute-binding protein 74 312 2.5E-29 T 14-10-2018 RY45_10380 d004d68e414dfa4c9c0566ec49c75d42 339 Gene3D G3DSA:3.40.190.10 28 300 5.6E-87 T 14-10-2018 RY45_10380 d004d68e414dfa4c9c0566ec49c75d42 339 PIRSF PIRSF002825 1 332 5.7E-85 T 14-10-2018 IPR026045 Ferric binding protein RY45_10380 d004d68e414dfa4c9c0566ec49c75d42 339 Gene3D G3DSA:3.40.190.10 129 315 5.6E-87 T 14-10-2018 RY45_10380 d004d68e414dfa4c9c0566ec49c75d42 339 SUPERFAMILY SSF53850 25 327 3.66E-68 T 14-10-2018 RY45_01735 0c1835fe36e9b3f1d958fc404889e986 598 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_01735 0c1835fe36e9b3f1d958fc404889e986 598 SUPERFAMILY SSF143975 2 417 5.36E-132 T 14-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_01735 0c1835fe36e9b3f1d958fc404889e986 598 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 5 597 2.0E-258 T 14-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 RY45_01735 0c1835fe36e9b3f1d958fc404889e986 598 Gene3D G3DSA:3.50.30.80 418 565 2.4E-47 T 14-10-2018 RY45_01735 0c1835fe36e9b3f1d958fc404889e986 598 SUPERFAMILY SSF52016 418 596 3.77E-51 T 14-10-2018 RY45_01735 0c1835fe36e9b3f1d958fc404889e986 598 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 2 598 55.058 T 14-10-2018 RY45_01735 0c1835fe36e9b3f1d958fc404889e986 598 Pfam PF00920 Dehydratase family 66 594 1.9E-146 T 14-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_01735 0c1835fe36e9b3f1d958fc404889e986 598 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 155 165 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_09970 d387480d77e8df97d943e7a41b258860 287 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 280 8.1E-68 T 14-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 SUPERFAMILY SSF51735 123 279 1.83E-51 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_09970 d387480d77e8df97d943e7a41b258860 287 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 14-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 2.4E-41 T 14-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 SUPERFAMILY SSF53223 1 122 3.64E-41 T 14-10-2018 RY45_09970 d387480d77e8df97d943e7a41b258860 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 5.5E-86 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 5.5E-86 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 5.5E-86 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 5.5E-86 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 5.5E-86 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 5.5E-86 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 5.5E-86 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 Gene3D G3DSA:3.40.50.10860 8 276 9.9E-108 T 14-10-2018 RY45_09970 d387480d77e8df97d943e7a41b258860 287 Gene3D G3DSA:3.40.50.720 6 259 9.9E-108 T 14-10-2018 RY45_09970 d387480d77e8df97d943e7a41b258860 287 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 14-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_09970 d387480d77e8df97d943e7a41b258860 287 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.714 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RY45_07005 593c42ed5d59bc50f63c664e73b0678e 162 SUPERFAMILY SSF54001 39 160 5.89E-41 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RY45_07005 593c42ed5d59bc50f63c664e73b0678e 162 Gene3D G3DSA:3.90.1720.10 42 161 1.4E-42 T 14-10-2018 RY45_07005 593c42ed5d59bc50f63c664e73b0678e 162 Pfam PF00877 NlpC/P60 family 55 159 1.4E-31 T 14-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RY45_04655 7431c891616fd5fc1479b856b85487ff 337 Gene3D G3DSA:3.30.420.40 3 315 3.1E-130 T 14-10-2018 RY45_04655 7431c891616fd5fc1479b856b85487ff 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 1.4E-124 T 14-10-2018 IPR017861 Kae1/TsaD family RY45_04655 7431c891616fd5fc1479b856b85487ff 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 63.015 T 14-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 RY45_04655 7431c891616fd5fc1479b856b85487ff 337 SUPERFAMILY SSF53067 3 122 1.88E-30 T 14-10-2018 RY45_04655 7431c891616fd5fc1479b856b85487ff 337 Pfam PF00814 Glycoprotease family 24 307 5.2E-100 T 14-10-2018 IPR000905 Gcp-like domain RY45_04655 7431c891616fd5fc1479b856b85487ff 337 Gene3D G3DSA:3.30.420.40 129 293 3.1E-130 T 14-10-2018 RY45_04655 7431c891616fd5fc1479b856b85487ff 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 5.3E-135 T 14-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 RY45_04655 7431c891616fd5fc1479b856b85487ff 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.4E-51 T 14-10-2018 IPR017861 Kae1/TsaD family RY45_04655 7431c891616fd5fc1479b856b85487ff 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.4E-51 T 14-10-2018 IPR017861 Kae1/TsaD family RY45_04655 7431c891616fd5fc1479b856b85487ff 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.4E-51 T 14-10-2018 IPR017861 Kae1/TsaD family RY45_04655 7431c891616fd5fc1479b856b85487ff 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.4E-51 T 14-10-2018 IPR017861 Kae1/TsaD family RY45_04655 7431c891616fd5fc1479b856b85487ff 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.4E-51 T 14-10-2018 IPR017861 Kae1/TsaD family RY45_04655 7431c891616fd5fc1479b856b85487ff 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 1.4E-51 T 14-10-2018 IPR017861 Kae1/TsaD family RY45_04655 7431c891616fd5fc1479b856b85487ff 337 SUPERFAMILY SSF53067 101 309 3.15E-44 T 14-10-2018 RY45_04655 7431c891616fd5fc1479b856b85487ff 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 14-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 SUPERFAMILY SSF47729 3 94 3.97E-32 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 30.708 T 14-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 95 6.6E-51 T 14-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 5.4E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 5.4E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 5.4E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 1.4E-32 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 Gene3D G3DSA:4.10.520.10 1 98 5.4E-38 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RY45_11260 0a19500c514dcda5261ba9072480db3f 98 SMART SM00411 3 92 5.7E-41 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_11425 7e55b4f74cfc006aa70de455845a8759 1612 SUPERFAMILY SSF53223 757 958 4.03E-22 T 14-10-2018 RY45_11425 7e55b4f74cfc006aa70de455845a8759 1612 SUPERFAMILY SSF51735 947 1283 9.19E-29 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_11425 7e55b4f74cfc006aa70de455845a8759 1612 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 76 1603 0.0 T 14-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RY45_11425 7e55b4f74cfc006aa70de455845a8759 1612 PIRSF PIRSF036761 1 1610 0.0 T 14-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RY45_03765 59edf4b73ef1e3d0723dfb9eb40e73b0 426 SUPERFAMILY SSF54631 189 326 2.65E-26 T 14-10-2018 RY45_03765 59edf4b73ef1e3d0723dfb9eb40e73b0 426 Pfam PF00571 CBS domain 275 323 2.1E-4 T 14-10-2018 IPR000644 CBS domain RY45_03765 59edf4b73ef1e3d0723dfb9eb40e73b0 426 Gene3D G3DSA:3.10.580.10 184 335 5.7E-43 T 14-10-2018 RY45_03765 59edf4b73ef1e3d0723dfb9eb40e73b0 426 Gene3D G3DSA:3.30.465.10 337 415 1.8E-24 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_03765 59edf4b73ef1e3d0723dfb9eb40e73b0 426 SUPERFAMILY SSF56176 337 416 5.45E-19 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_03765 59edf4b73ef1e3d0723dfb9eb40e73b0 426 Pfam PF03471 Transporter associated domain 341 413 1.3E-14 T 14-10-2018 IPR005170 Transporter-associated domain RY45_03765 59edf4b73ef1e3d0723dfb9eb40e73b0 426 Pfam PF01595 Domain of unknown function DUF21 11 179 5.5E-50 T 14-10-2018 IPR002550 CNNM, transmembrane domain RY45_03765 59edf4b73ef1e3d0723dfb9eb40e73b0 426 SMART SM01091 339 417 2.4E-21 T 14-10-2018 IPR005170 Transporter-associated domain RY45_03275 3b114259f21fbafacb3b05b639c888f2 132 Gene3D G3DSA:3.10.290.10 6 110 9.9E-36 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_03275 3b114259f21fbafacb3b05b639c888f2 132 SUPERFAMILY SSF55174 11 106 3.3E-28 T 14-10-2018 RY45_03275 3b114259f21fbafacb3b05b639c888f2 132 SMART SM00363 11 72 8.3E-8 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_03275 3b114259f21fbafacb3b05b639c888f2 132 PIRSF PIRSF016821 8 132 1.4E-41 T 14-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 RY45_03275 3b114259f21fbafacb3b05b639c888f2 132 Pfam PF01479 S4 domain 11 57 3.2E-13 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 369 371 3.9E-6 T 14-10-2018 RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 3.9E-6 T 14-10-2018 RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 3.1E-46 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 SUPERFAMILY SSF51735 137 303 3.69E-51 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 SUPERFAMILY SSF52283 1 360 1.36E-65 T 14-10-2018 RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 7.3E-85 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 Gene3D G3DSA:3.40.50.720 130 305 2.4E-138 T 14-10-2018 RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 Gene3D G3DSA:3.40.50.720 3 352 2.4E-138 T 14-10-2018 RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 PIRSF PIRSF000183 1 371 4.2E-158 T 14-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 173 198 - T 14-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 SMART SM01002 149 297 3.0E-90 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 SMART SM01003 4 137 9.9E-76 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RY45_01520 7171fbd410e84d046eb91d1bd5958f3f 371 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 2.3E-157 T 14-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 RY45_19500 dbc4899a6964b503a2ed5c83557ab8bc 319 Pfam PF01928 CYTH domain 3 196 2.0E-28 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RY45_19500 dbc4899a6964b503a2ed5c83557ab8bc 319 SMART SM01118 2 202 1.4E-39 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RY45_19500 dbc4899a6964b503a2ed5c83557ab8bc 319 Gene3D G3DSA:2.40.320.10 1 198 7.0E-30 T 14-10-2018 RY45_19500 dbc4899a6964b503a2ed5c83557ab8bc 319 SUPERFAMILY SSF55154 1 203 7.85E-42 T 14-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 RY45_19635 65cce6e907b04a89c4460fef03c1366f 120 Pfam PF17209 Hfq protein 21 80 4.8E-27 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RY45_19635 65cce6e907b04a89c4460fef03c1366f 120 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 13 79 26.125 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RY45_19635 65cce6e907b04a89c4460fef03c1366f 120 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 20 78 1.0E-21 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RY45_19635 65cce6e907b04a89c4460fef03c1366f 120 SUPERFAMILY SSF50182 19 81 9.16E-18 T 14-10-2018 IPR010920 LSM domain superfamily RY45_19635 65cce6e907b04a89c4460fef03c1366f 120 Gene3D G3DSA:2.30.30.100 16 89 2.8E-23 T 14-10-2018 RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 Pfam PF03160 Calx-beta domain 842 927 5.6E-7 T 14-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 Pfam PF03160 Calx-beta domain 943 1041 3.5E-6 T 14-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 SUPERFAMILY SSF141072 840 948 5.36E-23 T 14-10-2018 IPR038081 CalX-like domain superfamily RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 SUPERFAMILY SSF56219 475 833 1.28E-31 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 SMART SM00237 830 928 9.5E-13 T 14-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 SMART SM00237 941 1042 6.3E-28 T 14-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 Gene3D G3DSA:2.60.40.2030 841 953 1.2E-19 T 14-10-2018 IPR038081 CalX-like domain superfamily RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 Gene3D G3DSA:2.60.40.2030 954 1064 3.8E-13 T 14-10-2018 IPR038081 CalX-like domain superfamily RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 Pfam PF00932 Lamin Tail Domain 19 129 1.4E-13 T 14-10-2018 IPR001322 Lamin tail domain RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 481 826 4.3E-6 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RY45_11940 e7a2d9472171bdcc70073694603a517d 1072 SUPERFAMILY SSF141072 952 1066 1.31E-17 T 14-10-2018 IPR038081 CalX-like domain superfamily RY45_10195 64288be24e23367c4160aeccf6d1ad9e 475 Gene3D G3DSA:3.30.420.10 5 203 2.6E-72 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_10195 64288be24e23367c4160aeccf6d1ad9e 475 PIRSF PIRSF000977 5 475 3.1E-197 T 14-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 RY45_10195 64288be24e23367c4160aeccf6d1ad9e 475 Pfam PF00929 Exonuclease 15 194 1.6E-25 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_10195 64288be24e23367c4160aeccf6d1ad9e 475 Gene3D G3DSA:2.30.30.450 216 355 1.2E-56 T 14-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily RY45_10195 64288be24e23367c4160aeccf6d1ad9e 475 SUPERFAMILY SSF53098 12 475 9.49E-134 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_10195 64288be24e23367c4160aeccf6d1ad9e 475 Gene3D G3DSA:1.20.1280.70 362 422 3.8E-24 T 14-10-2018 RY45_10195 64288be24e23367c4160aeccf6d1ad9e 475 Pfam PF08411 Exonuclease C-terminal 214 473 8.2E-101 T 14-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 RY45_10265 466f02ccdc617759ad8e9ea18ad18107 167 Pfam PF01863 Protein of unknown function DUF45 96 153 4.7E-12 T 14-10-2018 IPR002725 Protein of unknown function DUF45 RY45_10265 466f02ccdc617759ad8e9ea18ad18107 167 Gene3D G3DSA:3.30.2010.10 73 161 3.0E-6 T 14-10-2018 RY45_01000 2cfb7ae6134034b492a074106b04527f 440 Gene3D G3DSA:3.90.230.10 159 438 1.2E-74 T 14-10-2018 RY45_01000 2cfb7ae6134034b492a074106b04527f 440 Pfam PF00557 Metallopeptidase family M24 166 427 8.7E-44 T 14-10-2018 IPR000994 Peptidase M24 RY45_01000 2cfb7ae6134034b492a074106b04527f 440 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 333 345 - T 14-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RY45_01000 2cfb7ae6134034b492a074106b04527f 440 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 440 58.282 T 14-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 RY45_01000 2cfb7ae6134034b492a074106b04527f 440 SUPERFAMILY SSF55920 161 436 1.44E-52 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like RY45_01000 2cfb7ae6134034b492a074106b04527f 440 Gene3D G3DSA:3.40.350.10 1 157 2.2E-58 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RY45_15700 cbf638fa12538f36cb45deb6791304b8 272 SUPERFAMILY SSF53850 51 249 7.49E-14 T 14-10-2018 RY45_15700 cbf638fa12538f36cb45deb6791304b8 272 Gene3D G3DSA:3.40.190.10 56 247 4.1E-5 T 14-10-2018 RY45_15700 cbf638fa12538f36cb45deb6791304b8 272 Gene3D G3DSA:3.40.190.10 123 212 4.1E-5 T 14-10-2018 RY45_12205 872d0f4a3c38b477ded316e7e411abc3 404 Pfam PF03695 Uncharacterised protein family (UPF0149) 9 208 3.4E-11 T 14-10-2018 IPR011978 Uncharacterised protein family UPF0149 RY45_12205 872d0f4a3c38b477ded316e7e411abc3 404 SUPERFAMILY SSF101327 9 119 2.48E-12 T 14-10-2018 IPR036255 YgfB-like superfamily RY45_12205 872d0f4a3c38b477ded316e7e411abc3 404 Gene3D G3DSA:1.20.120.740 3 130 1.2E-8 T 14-10-2018 RY45_09520 2cb93d52fb3e512fd9b5cf404d865451 241 SUPERFAMILY SSF75217 4 187 1.37E-39 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_09520 2cb93d52fb3e512fd9b5cf404d865451 241 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 236 3.0E-88 T 14-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 RY45_09520 2cb93d52fb3e512fd9b5cf404d865451 241 Gene3D G3DSA:1.10.8.590 173 236 8.7E-29 T 14-10-2018 RY45_09520 2cb93d52fb3e512fd9b5cf404d865451 241 Gene3D G3DSA:3.40.1280.10 1 164 4.9E-66 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_09520 2cb93d52fb3e512fd9b5cf404d865451 241 Pfam PF00588 SpoU rRNA Methylase family 5 154 4.6E-35 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RY45_09520 2cb93d52fb3e512fd9b5cf404d865451 241 PIRSF PIRSF004808 1 241 4.9E-78 T 14-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 RY45_10990 97c4fe85ab0cff5c399c770375666528 106 SUPERFAMILY SSF54909 14 103 1.57E-24 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_10990 97c4fe85ab0cff5c399c770375666528 106 Gene3D G3DSA:3.30.70.100 1 105 9.0E-29 T 14-10-2018 RY45_10990 97c4fe85ab0cff5c399c770375666528 106 Pfam PF03992 Antibiotic biosynthesis monooxygenase 14 85 6.4E-12 T 14-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RY45_18555 0fb142a6ea7118fbf1be65a3316cc179 124 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 7 120 2.7E-46 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RY45_18555 0fb142a6ea7118fbf1be65a3316cc179 124 SUPERFAMILY SSF51316 6 120 1.05E-50 T 14-10-2018 IPR011057 Mss4-like superfamily RY45_18555 0fb142a6ea7118fbf1be65a3316cc179 124 Pfam PF01641 SelR domain 10 119 7.2E-46 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RY45_18555 0fb142a6ea7118fbf1be65a3316cc179 124 Gene3D G3DSA:2.170.150.20 2 124 5.0E-51 T 14-10-2018 RY45_13950 8a83e615afa7bdf5602f69619bb0e524 372 SUPERFAMILY SSF103388 29 371 8.76E-116 T 14-10-2018 IPR036139 Virulence-associated V antigen superfamily GO:0005576|GO:0009405 RY45_13950 8a83e615afa7bdf5602f69619bb0e524 372 Pfam PF04792 V antigen (LcrV) protein 281 372 4.2E-37 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 RY45_13950 8a83e615afa7bdf5602f69619bb0e524 372 Pfam PF04792 V antigen (LcrV) protein 2 231 8.0E-66 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 RY45_13950 8a83e615afa7bdf5602f69619bb0e524 372 PRINTS PR01592 Low calcium response V antigen signature 182 205 2.7E-26 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 RY45_13950 8a83e615afa7bdf5602f69619bb0e524 372 PRINTS PR01592 Low calcium response V antigen signature 157 179 2.7E-26 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 RY45_13950 8a83e615afa7bdf5602f69619bb0e524 372 PRINTS PR01592 Low calcium response V antigen signature 112 130 2.7E-26 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 RY45_13950 8a83e615afa7bdf5602f69619bb0e524 372 PRINTS PR01592 Low calcium response V antigen signature 34 59 2.7E-26 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 RY45_13950 8a83e615afa7bdf5602f69619bb0e524 372 PRINTS PR01592 Low calcium response V antigen signature 134 154 2.7E-26 T 14-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 RY45_03370 5bf3c89a45ae375984748d393c17b26c 112 SUPERFAMILY SSF50249 3 111 2.6E-28 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03370 5bf3c89a45ae375984748d393c17b26c 112 Gene3D G3DSA:2.40.50.140 1 111 7.3E-28 T 14-10-2018 RY45_03370 5bf3c89a45ae375984748d393c17b26c 112 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 6 111 4.5E-44 T 14-10-2018 IPR008231 Probable chaperone CsaA RY45_03370 5bf3c89a45ae375984748d393c17b26c 112 Pfam PF01588 Putative tRNA binding domain 14 109 2.1E-9 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 Pfam PF07670 Nucleoside recognition 348 438 1.9E-12 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 Pfam PF07670 Nucleoside recognition 509 691 1.2E-34 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.4E-5 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 53 68 5.4E-5 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 Pfam PF07664 Ferrous iron transport protein B C terminus 451 503 4.1E-19 T 14-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 9 688 3.7E-181 T 14-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 SUPERFAMILY SSF52540 6 164 3.0E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 Gene3D G3DSA:3.40.50.300 5 187 2.8E-46 T 14-10-2018 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 Pfam PF02421 Ferrous iron transport protein B 5 160 1.1E-60 T 14-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 RY45_14420 a2acd2446b35086a1664ed27d3cd1271 757 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 154 1.6E-12 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 SUPERFAMILY SSF50621 244 374 3.56E-33 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 169 182 4.9E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 349 362 4.9E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 67 79 4.9E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 250 269 4.9E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 47 65 4.9E-20 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 Gene3D G3DSA:3.20.20.10 26 262 2.9E-108 T 14-10-2018 IPR029066 PLP-binding barrel RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 SUPERFAMILY SSF51419 25 262 1.07E-60 T 14-10-2018 IPR029066 PLP-binding barrel RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01182 Ornithine decarboxylase signature 285 298 2.2E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01182 Ornithine decarboxylase signature 19 43 2.2E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01182 Ornithine decarboxylase signature 45 72 2.2E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01182 Ornithine decarboxylase signature 316 326 2.2E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01182 Ornithine decarboxylase signature 89 113 2.2E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01182 Ornithine decarboxylase signature 336 349 2.2E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 PRINTS PR01182 Ornithine decarboxylase signature 119 141 2.2E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 27 260 6.9E-50 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 261 349 2.3E-14 T 14-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 Gene3D G3DSA:2.40.37.10 14 363 2.9E-108 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RY45_06785 8d7daf916afe3ce91296060fe4ac280a 383 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 203 220 - T 14-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site RY45_21620 2c7e259e40be7f917888c94bcc6138c2 282 Pfam PF08668 HDOD domain 19 210 2.6E-56 T 14-10-2018 IPR013976 Metal-dependent hydrolase HDOD RY45_21620 2c7e259e40be7f917888c94bcc6138c2 282 SUPERFAMILY SSF109604 10 275 1.6E-69 T 14-10-2018 RY45_21620 2c7e259e40be7f917888c94bcc6138c2 282 Gene3D G3DSA:1.10.3210.10 7 280 1.9E-71 T 14-10-2018 RY45_21875 ed27e1abf2ad05b9c29e93e3c8cd724d 281 TIGRFAM TIGR04553 ABC_peri_selen: putative selenate ABC transporter periplasmic binding protein 24 281 1.5E-113 T 14-10-2018 IPR030836 Putative ABC transporter periplasmic binding protein PhnD-like RY45_21875 ed27e1abf2ad05b9c29e93e3c8cd724d 281 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 18 240 2.3E-77 T 14-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 RY45_21875 ed27e1abf2ad05b9c29e93e3c8cd724d 281 SUPERFAMILY SSF53850 44 231 1.38E-44 T 14-10-2018 RY45_21875 ed27e1abf2ad05b9c29e93e3c8cd724d 281 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 27 267 1.9E-77 T 14-10-2018 RY45_21875 ed27e1abf2ad05b9c29e93e3c8cd724d 281 SMART SM00062 23 253 0.0053 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_21875 ed27e1abf2ad05b9c29e93e3c8cd724d 281 Gene3D G3DSA:3.40.190.10 107 215 2.0E-70 T 14-10-2018 RY45_21875 ed27e1abf2ad05b9c29e93e3c8cd724d 281 Gene3D G3DSA:3.40.190.10 27 241 2.0E-70 T 14-10-2018 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 SUPERFAMILY SSF55681 163 508 4.58E-118 T 14-10-2018 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 Pfam PF01336 OB-fold nucleic acid binding domain 69 147 2.6E-18 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 PIRSF PIRSF039101 1 511 4.5E-206 T 14-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 Gene3D G3DSA:2.40.50.140 16 155 4.4E-44 T 14-10-2018 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 SUPERFAMILY SSF50249 14 156 8.91E-48 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 511 45.074 T 14-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 Gene3D G3DSA:3.30.930.10 156 505 2.0E-129 T 14-10-2018 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 Pfam PF00152 tRNA synthetases class II (D, K and N) 164 507 1.4E-78 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 PRINTS PR00982 Lysyl-tRNA synthetase signature 392 408 5.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 PRINTS PR00982 Lysyl-tRNA synthetase signature 245 258 5.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 PRINTS PR00982 Lysyl-tRNA synthetase signature 200 210 5.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 PRINTS PR00982 Lysyl-tRNA synthetase signature 216 232 5.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 PRINTS PR00982 Lysyl-tRNA synthetase signature 263 280 5.5E-39 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_17360 e22781779c35ad8130a18cbbf6453a37 511 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 511 3.1E-223 T 14-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_20450 63484eafc1836c1fcac0e4582a0338ae 120 SUPERFAMILY SSF63520 22 111 3.27E-7 T 14-10-2018 IPR036634 PRD domain superfamily GO:0006355 RY45_20450 63484eafc1836c1fcac0e4582a0338ae 120 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 2 111 7.9E-46 T 14-10-2018 IPR020044 PRD domain protein, EF0829/AHA3910 RY45_20450 63484eafc1836c1fcac0e4582a0338ae 120 Gene3D G3DSA:1.10.1790.10 5 112 2.2E-33 T 14-10-2018 RY45_05190 a7ca1edc1e5c9c3028a7d73c2473902a 166 SUPERFAMILY SSF47413 3 57 2.7E-13 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_05190 a7ca1edc1e5c9c3028a7d73c2473902a 166 Pfam PF01381 Helix-turn-helix 3 53 2.2E-14 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_05190 a7ca1edc1e5c9c3028a7d73c2473902a 166 SMART SM00530 2 56 2.6E-12 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_05190 a7ca1edc1e5c9c3028a7d73c2473902a 166 Pfam PF13239 2TM domain 85 162 6.0E-26 T 14-10-2018 IPR025698 2TM domain RY45_05190 a7ca1edc1e5c9c3028a7d73c2473902a 166 Gene3D G3DSA:1.10.260.40 1 82 1.1E-14 T 14-10-2018 RY45_15080 f600d9efc602b4d702b0798bc3909329 290 SUPERFAMILY SSF54637 116 285 9.48E-59 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_15080 f600d9efc602b4d702b0798bc3909329 290 Pfam PF13622 Thioesterase-like superfamily 33 283 4.3E-57 T 14-10-2018 RY45_15080 f600d9efc602b4d702b0798bc3909329 290 Gene3D G3DSA:3.10.129.10 132 286 1.1E-61 T 14-10-2018 RY45_15080 f600d9efc602b4d702b0798bc3909329 290 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 284 5.1E-97 T 14-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 RY45_15080 f600d9efc602b4d702b0798bc3909329 290 SUPERFAMILY SSF54637 5 114 1.07E-39 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_15080 f600d9efc602b4d702b0798bc3909329 290 Gene3D G3DSA:3.10.129.10 2 116 5.2E-45 T 14-10-2018 RY45_00015 c03ecb7f4a3c253f88247870a8c459e6 367 SUPERFAMILY SSF52540 3 359 2.21E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00015 c03ecb7f4a3c253f88247870a8c459e6 367 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 14-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RY45_00015 c03ecb7f4a3c253f88247870a8c459e6 367 Gene3D G3DSA:1.20.1050.90 120 297 5.8E-83 T 14-10-2018 RY45_00015 c03ecb7f4a3c253f88247870a8c459e6 367 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 367 95.783 T 14-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RY45_00015 c03ecb7f4a3c253f88247870a8c459e6 367 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 352 8.2E-32 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RY45_00015 c03ecb7f4a3c253f88247870a8c459e6 367 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 3 356 1.7E-115 T 14-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RY45_00015 c03ecb7f4a3c253f88247870a8c459e6 367 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 14-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RY45_00015 c03ecb7f4a3c253f88247870a8c459e6 367 Gene3D G3DSA:3.40.50.300 6 332 5.8E-83 T 14-10-2018 RY45_09575 ce95b7917e2b581dd697bc0905fb880e 367 Gene3D G3DSA:1.10.150.530 5 66 7.1E-27 T 14-10-2018 RY45_09575 ce95b7917e2b581dd697bc0905fb880e 367 PIRSF PIRSF006004 3 360 1.2E-144 T 14-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 RY45_09575 ce95b7917e2b581dd697bc0905fb880e 367 SUPERFAMILY SSF102114 102 306 5.1E-14 T 14-10-2018 RY45_09575 ce95b7917e2b581dd697bc0905fb880e 367 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 3 352 1.4E-163 T 14-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 RY45_09575 ce95b7917e2b581dd697bc0905fb880e 367 Pfam PF04055 Radical SAM superfamily 108 275 2.1E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_09575 ce95b7917e2b581dd697bc0905fb880e 367 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 5 347 73.36 T 14-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 RY45_09575 ce95b7917e2b581dd697bc0905fb880e 367 Gene3D G3DSA:3.20.20.70 67 332 5.8E-110 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_15830 4bcbd7b67fa885b6aabe1be54042e1d0 576 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 475 486 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_15830 4bcbd7b67fa885b6aabe1be54042e1d0 576 Pfam PF00037 4Fe-4S binding domain 470 490 6.1E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_15830 4bcbd7b67fa885b6aabe1be54042e1d0 576 Gene3D G3DSA:3.30.70.20 439 537 2.3E-10 T 14-10-2018 RY45_15830 4bcbd7b67fa885b6aabe1be54042e1d0 576 Pfam PF12838 4Fe-4S dicluster domain 215 256 3.3E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_15830 4bcbd7b67fa885b6aabe1be54042e1d0 576 Gene3D G3DSA:3.30.70.20 209 270 1.8E-12 T 14-10-2018 RY45_15830 4bcbd7b67fa885b6aabe1be54042e1d0 576 SUPERFAMILY SSF54862 188 533 1.89E-34 T 14-10-2018 RY45_10850 46d87eec95817d5dfdc6431b57d6070a 158 SUPERFAMILY SSF52833 1 158 2.58E-62 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_10850 46d87eec95817d5dfdc6431b57d6070a 158 Pfam PF00255 Glutathione peroxidase 9 110 2.0E-41 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_10850 46d87eec95817d5dfdc6431b57d6070a 158 PIRSF PIRSF000303 1 158 3.5E-62 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_10850 46d87eec95817d5dfdc6431b57d6070a 158 PRINTS PR01011 Glutathione peroxidase family signature 56 72 1.5E-19 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_10850 46d87eec95817d5dfdc6431b57d6070a 158 PRINTS PR01011 Glutathione peroxidase family signature 21 38 1.5E-19 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_10850 46d87eec95817d5dfdc6431b57d6070a 158 PRINTS PR01011 Glutathione peroxidase family signature 122 131 1.5E-19 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RY45_10850 46d87eec95817d5dfdc6431b57d6070a 158 ProSitePatterns PS00460 Glutathione peroxidases active site. 23 38 - T 14-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 RY45_10850 46d87eec95817d5dfdc6431b57d6070a 158 Gene3D G3DSA:3.40.30.10 1 158 9.0E-66 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 377 48.697 T 14-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 263 274 3.1E-11 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 348 361 3.1E-11 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 235 244 3.1E-11 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 SUPERFAMILY SSF52317 153 377 1.27E-61 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 3.2E-53 T 14-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 Gene3D G3DSA:3.50.30.20 2 151 1.0E-61 T 14-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 Gene3D G3DSA:3.40.50.880 152 378 7.5E-75 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 SUPERFAMILY SSF52021 4 142 5.75E-58 T 14-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 SMART SM01097 3 133 8.0E-93 T 14-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 280 297 7.6E-41 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 232 246 7.6E-41 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 305 316 7.6E-41 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 263 279 7.6E-41 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 193 207 7.6E-41 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 Pfam PF00117 Glutamine amidotransferase class-I 196 371 2.4E-48 T 14-10-2018 IPR017926 Glutamine amidotransferase RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00097 Anthranilate synthase component II signature 235 244 1.1E-5 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00097 Anthranilate synthase component II signature 348 361 1.1E-5 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 PRINTS PR00097 Anthranilate synthase component II signature 263 274 1.1E-5 T 14-10-2018 RY45_14330 a4d0c1ba7a44b304d2c8eb9c59da8d7a 378 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 374 1.9E-149 T 14-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_15015 962b632dcddc4df336db5d0e1c8c6ca9 184 Pfam PF02397 Bacterial sugar transferase 3 172 1.3E-47 T 14-10-2018 IPR003362 Bacterial sugar transferase RY45_12565 7fae84f1d19b1197fb2ee949ccf2d2ef 268 SUPERFAMILY SSF52096 4 248 2.05E-66 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_12565 7fae84f1d19b1197fb2ee949ccf2d2ef 268 Gene3D G3DSA:3.90.226.10 1 206 3.4E-64 T 14-10-2018 RY45_12565 7fae84f1d19b1197fb2ee949ccf2d2ef 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 240 2.3E-41 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RY45_12565 7fae84f1d19b1197fb2ee949ccf2d2ef 268 Gene3D G3DSA:1.10.12.10 207 253 1.7E-10 T 14-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RY45_06095 26427961ae994e50e1f3509d33866561 380 Gene3D G3DSA:3.40.50.150 194 380 2.1E-53 T 14-10-2018 RY45_06095 26427961ae994e50e1f3509d33866561 380 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 2 379 50.719 T 14-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 RY45_06095 26427961ae994e50e1f3509d33866561 380 PIRSF PIRSF037565 1 380 1.4E-155 T 14-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 RY45_06095 26427961ae994e50e1f3509d33866561 380 Pfam PF05175 Methyltransferase small domain 206 376 4.7E-54 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RY45_06095 26427961ae994e50e1f3509d33866561 380 SUPERFAMILY SSF53335 199 374 8.29E-29 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_06095 26427961ae994e50e1f3509d33866561 380 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 308 314 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_06095 26427961ae994e50e1f3509d33866561 380 Gene3D G3DSA:3.40.50.150 9 182 1.7E-54 T 14-10-2018 RY45_21985 e1458604b7fb127181329343669eb4dc 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 2.7E-32 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RY45_21985 e1458604b7fb127181329343669eb4dc 342 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 14-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RY45_21985 e1458604b7fb127181329343669eb4dc 342 SMART SM00829 12 338 2.7E-4 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RY45_21985 e1458604b7fb127181329343669eb4dc 342 SUPERFAMILY SSF51735 141 305 1.6E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21985 e1458604b7fb127181329343669eb4dc 342 SUPERFAMILY SSF50129 1 173 2.74E-54 T 14-10-2018 IPR011032 GroES-like superfamily RY45_21985 e1458604b7fb127181329343669eb4dc 342 Gene3D G3DSA:3.40.50.720 153 286 2.2E-120 T 14-10-2018 RY45_21985 e1458604b7fb127181329343669eb4dc 342 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.513 T 14-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 RY45_21985 e1458604b7fb127181329343669eb4dc 342 Gene3D G3DSA:3.90.180.10 21 328 2.2E-120 T 14-10-2018 RY45_21985 e1458604b7fb127181329343669eb4dc 342 Pfam PF00107 Zinc-binding dehydrogenase 174 301 1.7E-26 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RY45_21985 e1458604b7fb127181329343669eb4dc 342 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 2.5E-179 T 14-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 RY45_21695 146765aa3aa9f924c67d29bf2e820b52 418 TIGRFAM TIGR03590 PseG: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase 4 273 2.1E-91 T 14-10-2018 IPR020023 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase RY45_21695 146765aa3aa9f924c67d29bf2e820b52 418 Gene3D G3DSA:3.40.50.11190 3 145 5.1E-36 T 14-10-2018 RY45_21695 146765aa3aa9f924c67d29bf2e820b52 418 SUPERFAMILY SSF53756 190 314 2.92E-9 T 14-10-2018 RY45_21695 146765aa3aa9f924c67d29bf2e820b52 418 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 208 314 3.7E-7 T 14-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RY45_21695 146765aa3aa9f924c67d29bf2e820b52 418 Gene3D G3DSA:3.40.50.2000 146 283 1.3E-28 T 14-10-2018 RY45_18145 e5107040989b65790ef28b836429afc2 815 Pfam PF00271 Helicase conserved C-terminal domain 209 328 3.0E-11 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_18145 e5107040989b65790ef28b836429afc2 815 SMART SM00487 2 188 1.6E-15 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_18145 e5107040989b65790ef28b836429afc2 815 Pfam PF08482 ATP-dependent helicase C-terminal 668 800 3.8E-51 T 14-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal RY45_18145 e5107040989b65790ef28b836429afc2 815 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 812 0.0 T 14-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 RY45_18145 e5107040989b65790ef28b836429afc2 815 SMART SM00490 226 328 6.1E-19 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_18145 e5107040989b65790ef28b836429afc2 815 Gene3D G3DSA:1.20.120.1080 369 460 1.3E-9 T 14-10-2018 RY45_18145 e5107040989b65790ef28b836429afc2 815 PIRSF PIRSF005496 1 814 3.4E-298 T 14-10-2018 RY45_18145 e5107040989b65790ef28b836429afc2 815 Pfam PF00270 DEAD/DEAH box helicase 17 163 2.0E-7 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_18145 e5107040989b65790ef28b836429afc2 815 Gene3D G3DSA:3.40.50.300 1 179 3.3E-49 T 14-10-2018 RY45_18145 e5107040989b65790ef28b836429afc2 815 SMART SM00847 387 498 1.4E-12 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 RY45_18145 e5107040989b65790ef28b836429afc2 815 Gene3D G3DSA:3.40.50.300 180 348 2.3E-51 T 14-10-2018 RY45_18145 e5107040989b65790ef28b836429afc2 815 Pfam PF04408 Helicase associated domain (HA2) 388 452 2.4E-12 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 RY45_18145 e5107040989b65790ef28b836429afc2 815 SUPERFAMILY SSF52540 16 339 7.8E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15640 a4f369e9ff40bbc746368b9b759bdeda 123 Pfam PF16358 RcsF lipoprotein 34 120 1.1E-15 T 14-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 RY45_15640 a4f369e9ff40bbc746368b9b759bdeda 123 Gene3D G3DSA:3.30.110.70 23 122 2.6E-28 T 14-10-2018 RY45_01850 6e5ee782b93b78cbea476feb13e5fd26 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 14-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01850 6e5ee782b93b78cbea476feb13e5fd26 100 Gene3D G3DSA:3.30.70.330 1 100 2.7E-38 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RY45_01850 6e5ee782b93b78cbea476feb13e5fd26 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.883 T 14-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RY45_01850 6e5ee782b93b78cbea476feb13e5fd26 100 SUPERFAMILY SSF54189 3 93 1.33E-31 T 14-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01850 6e5ee782b93b78cbea476feb13e5fd26 100 Pfam PF00276 Ribosomal protein L23 9 95 1.3E-31 T 14-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RY45_07575 d068f2756177b81700f239d44d504bad 417 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 30 411 3.4E-115 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RY45_07575 d068f2756177b81700f239d44d504bad 417 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 304 323 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RY45_07575 d068f2756177b81700f239d44d504bad 417 SMART SM01329 29 413 4.8E-176 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RY45_07575 d068f2756177b81700f239d44d504bad 417 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 417 1.7E-231 T 14-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RY45_07575 d068f2756177b81700f239d44d504bad 417 Gene3D G3DSA:3.40.718.10 1 417 8.6E-187 T 14-10-2018 RY45_07575 d068f2756177b81700f239d44d504bad 417 SUPERFAMILY SSF53659 4 416 1.4E-145 T 14-10-2018 RY45_17100 211047fd59e94be05ce92321585b4305 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.452 T 14-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RY45_17100 211047fd59e94be05ce92321585b4305 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 1.4E-58 T 14-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RY45_17100 211047fd59e94be05ce92321585b4305 158 SUPERFAMILY SSF54534 81 157 3.14E-23 T 14-10-2018 RY45_17100 211047fd59e94be05ce92321585b4305 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 1.2E-27 T 14-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RY45_17100 211047fd59e94be05ce92321585b4305 158 SUPERFAMILY SSF46557 3 78 1.96E-29 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RY45_17100 211047fd59e94be05ce92321585b4305 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RY45_17100 211047fd59e94be05ce92321585b4305 158 Gene3D G3DSA:1.10.287.180 1 75 1.0E-32 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RY45_17100 211047fd59e94be05ce92321585b4305 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 1.3E-31 T 14-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RY45_17100 211047fd59e94be05ce92321585b4305 158 Gene3D G3DSA:3.10.50.30 76 158 3.6E-31 T 14-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RY45_17100 211047fd59e94be05ce92321585b4305 158 PIRSF PIRSF006092 1 158 2.6E-53 T 14-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RY45_18490 84060660ce944dd2096e03d96677780b 279 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 152 253 3.4E-15 T 14-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RY45_18490 84060660ce944dd2096e03d96677780b 279 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 11 96 2.5E-10 T 14-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain RY45_18490 84060660ce944dd2096e03d96677780b 279 SUPERFAMILY SSF51197 7 276 1.17E-60 T 14-10-2018 RY45_18490 84060660ce944dd2096e03d96677780b 279 Gene3D G3DSA:2.60.120.330 1 279 5.9E-91 T 14-10-2018 IPR027443 Isopenicillin N synthase-like RY45_17915 5332301ffd373bfa527b4ab7cde5692f 393 SUPERFAMILY SSF53383 2 391 2.79E-105 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_17915 5332301ffd373bfa527b4ab7cde5692f 393 Gene3D G3DSA:3.90.1150.10 17 389 3.3E-131 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_17915 5332301ffd373bfa527b4ab7cde5692f 393 Pfam PF00155 Aminotransferase class I and II 43 385 2.6E-37 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_17915 5332301ffd373bfa527b4ab7cde5692f 393 Gene3D G3DSA:3.40.640.10 64 283 3.3E-131 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.6E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 Pfam PF03466 LysR substrate binding domain 88 289 1.7E-46 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 Gene3D G3DSA:3.40.190.10 91 289 6.5E-66 T 14-10-2018 RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 SUPERFAMILY SSF46785 1 85 3.18E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 SUPERFAMILY SSF53850 88 296 2.33E-41 T 14-10-2018 RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 Gene3D G3DSA:3.40.190.10 161 261 6.5E-66 T 14-10-2018 RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16485 a9ed79bab071d22023cd703f700cc2cc 298 Gene3D G3DSA:1.10.10.10 1 84 2.2E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09985 8588279581bf505fed57962fb220141c 750 Gene3D G3DSA:1.10.8.60 650 749 1.2E-29 T 14-10-2018 RY45_09985 8588279581bf505fed57962fb220141c 750 SUPERFAMILY SSF81923 1 142 3.4E-58 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RY45_09985 8588279581bf505fed57962fb220141c 750 SUPERFAMILY SSF52540 434 737 8.36E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09985 8588279581bf505fed57962fb220141c 750 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 650 730 1.3E-23 T 14-10-2018 IPR019489 Clp ATPase, C-terminal RY45_09985 8588279581bf505fed57962fb220141c 750 Gene3D G3DSA:3.40.50.300 436 649 2.0E-77 T 14-10-2018 RY45_09985 8588279581bf505fed57962fb220141c 750 Pfam PF07724 AAA domain (Cdc48 subfamily) 483 643 1.3E-48 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_09985 8588279581bf505fed57962fb220141c 750 Gene3D G3DSA:3.40.50.300 153 347 3.3E-62 T 14-10-2018 RY45_09985 8588279581bf505fed57962fb220141c 750 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 299 311 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 RY45_09985 8588279581bf505fed57962fb220141c 750 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 731 0.0 T 14-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 RY45_09985 8588279581bf505fed57962fb220141c 750 SMART SM00382 484 651 1.9E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_09985 8588279581bf505fed57962fb220141c 750 SMART SM00382 203 348 2.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_09985 8588279581bf505fed57962fb220141c 750 SUPERFAMILY SSF52540 166 423 1.42E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09985 8588279581bf505fed57962fb220141c 750 Gene3D G3DSA:1.10.1780.10 1 143 3.9E-43 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RY45_09985 8588279581bf505fed57962fb220141c 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 530 548 3.1E-36 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_09985 8588279581bf505fed57962fb220141c 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 592 606 3.1E-36 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_09985 8588279581bf505fed57962fb220141c 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 488 506 3.1E-36 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_09985 8588279581bf505fed57962fb220141c 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 559 577 3.1E-36 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_09985 8588279581bf505fed57962fb220141c 750 Gene3D G3DSA:1.10.8.60 348 435 9.6E-34 T 14-10-2018 RY45_09985 8588279581bf505fed57962fb220141c 750 SMART SM01086 650 739 3.4E-35 T 14-10-2018 IPR019489 Clp ATPase, C-terminal RY45_09985 8588279581bf505fed57962fb220141c 750 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 208 298 2.1E-11 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_09985 8588279581bf505fed57962fb220141c 750 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 515 533 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 RY45_09985 8588279581bf505fed57962fb220141c 750 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 5.8E-12 T 14-10-2018 IPR004176 Clp, N-terminal RY45_04090 b16c6bcd22d68f099b061ecc674d818a 535 Pfam PF07728 AAA domain (dynein-related subfamily) 48 178 2.4E-21 T 14-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RY45_04090 b16c6bcd22d68f099b061ecc674d818a 535 SUPERFAMILY SSF52540 29 303 8.57E-18 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04090 b16c6bcd22d68f099b061ecc674d818a 535 Pfam PF12592 Protein of unknown function (DUF3763) 471 520 9.2E-17 T 14-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 RY45_04090 b16c6bcd22d68f099b061ecc674d818a 535 Gene3D G3DSA:1.20.58.1510 312 511 1.7E-7 T 14-10-2018 RY45_04090 b16c6bcd22d68f099b061ecc674d818a 535 SMART SM00382 45 188 1.5E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_04090 b16c6bcd22d68f099b061ecc674d818a 535 Gene3D G3DSA:1.10.8.300 228 292 9.4E-28 T 14-10-2018 RY45_04090 b16c6bcd22d68f099b061ecc674d818a 535 Gene3D G3DSA:2.40.128.430 338 458 1.7E-7 T 14-10-2018 RY45_04090 b16c6bcd22d68f099b061ecc674d818a 535 Gene3D G3DSA:3.40.50.300 10 227 1.4E-56 T 14-10-2018 RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 Pfam PF00271 Helicase conserved C-terminal domain 220 321 1.0E-17 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 Gene3D G3DSA:3.40.50.300 198 369 2.9E-43 T 14-10-2018 RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 Pfam PF16124 RecQ zinc-binding 508 555 1.4E-8 T 14-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 SMART SM00490 241 322 1.6E-26 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 SUPERFAMILY SSF52540 56 337 2.64E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 SMART SM00487 11 207 3.6E-27 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 5 343 1.2E-107 T 14-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 Gene3D G3DSA:3.40.50.300 1 197 7.2E-69 T 14-10-2018 RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 Gene3D G3DSA:1.10.10.10 500 639 5.7E-10 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 Pfam PF00270 DEAD/DEAH box helicase 17 175 2.2E-16 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_10685 4f7b2679bdd0492dcdef03f9e09162f3 642 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 130 139 - T 14-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 SUPERFAMILY SSF48179 164 271 2.38E-28 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 270 25.129 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 165 270 1.9E-28 T 14-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 269 3.1E-68 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 226 248 - T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 Gene3D G3DSA:1.10.3730.10 167 274 2.7E-32 T 14-10-2018 RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 PIRSF PIRSF000193 3 272 3.7E-71 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 SUPERFAMILY SSF51735 6 162 8.05E-40 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 101 5.8E-22 T 14-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RY45_18760 e69da29defea6feeb9ee39b007f4cd97 274 Gene3D G3DSA:3.40.50.720 3 166 2.0E-49 T 14-10-2018 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 Gene3D G3DSA:3.40.50.720 128 462 1.9E-115 T 14-10-2018 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 285 292 - T 14-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 SMART SM00846 126 287 3.2E-53 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 292 449 5.7E-46 T 14-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 SUPERFAMILY SSF51735 127 303 1.16E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 308 324 7.8E-18 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 245 258 7.8E-18 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 364 381 7.8E-18 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 281 299 7.8E-18 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 Gene3D G3DSA:3.30.360.10 286 451 1.9E-115 T 14-10-2018 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 128 461 1.1E-112 T 14-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 SUPERFAMILY SSF55347 287 450 6.86E-53 T 14-10-2018 RY45_17330 da59a5f4951ed6d37c23973b2e321310 476 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 127 237 8.9E-21 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_03020 ffdf988413449aa9425671c918ca3981 204 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 90 3.1E-31 T 14-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 Gene3D G3DSA:2.40.500.20 91 204 3.2E-46 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 SUPERFAMILY SSF46609 1 91 2.36E-36 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 PRINTS PR01703 Manganese superoxide dismutase signature 163 175 3.4E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 3.4E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.4E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.4E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 3.4E-27 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 PIRSF PIRSF000349 1 204 4.3E-80 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 SUPERFAMILY SSF54719 89 202 4.06E-45 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 Gene3D G3DSA:1.10.287.990 20 90 4.1E-29 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 165 172 - T 14-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_03020 ffdf988413449aa9425671c918ca3981 204 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 198 3.5E-39 T 14-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_09425 8a2d49a043ec7566a0763e3779c8e307 358 Pfam PF01758 Sodium Bile acid symporter family 60 256 2.2E-60 T 14-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RY45_09425 8a2d49a043ec7566a0763e3779c8e307 358 Gene3D G3DSA:1.20.1530.20 9 344 5.7E-24 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily RY45_09425 8a2d49a043ec7566a0763e3779c8e307 358 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 15 344 1.5E-134 T 14-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RY45_09425 8a2d49a043ec7566a0763e3779c8e307 358 PIRSF PIRSF005508 2 357 3.4E-134 T 14-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RY45_18755 c4fc44c80ecd7ce4e7b42edf441bbf9b 183 Pfam PF02325 YGGT family 9 76 6.1E-20 T 14-10-2018 IPR003425 CCB3/YggT GO:0016020 RY45_18755 c4fc44c80ecd7ce4e7b42edf441bbf9b 183 Pfam PF02325 YGGT family 107 172 1.1E-19 T 14-10-2018 IPR003425 CCB3/YggT GO:0016020 RY45_19835 77efb25c04a75d6586213a95a093551b 239 Gene3D G3DSA:3.40.50.720 2 239 3.5E-38 T 14-10-2018 RY45_19835 77efb25c04a75d6586213a95a093551b 239 SUPERFAMILY SSF51735 3 239 1.74E-38 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_19835 77efb25c04a75d6586213a95a093551b 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.7E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_19835 77efb25c04a75d6586213a95a093551b 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 220 1.7E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_19835 77efb25c04a75d6586213a95a093551b 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.7E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_19835 77efb25c04a75d6586213a95a093551b 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.7E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_19835 77efb25c04a75d6586213a95a093551b 239 Pfam PF00106 short chain dehydrogenase 5 194 6.5E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_15085 575e4855e5fc669acd955796cbf17a93 307 SUPERFAMILY SSF55174 5 97 6.04E-17 T 14-10-2018 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 105 119 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 Gene3D G3DSA:3.30.70.1560 129 219 2.7E-52 T 14-10-2018 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 SUPERFAMILY SSF55120 67 235 5.28E-43 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 Pfam PF01479 S4 domain 4 48 2.0E-12 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 Pfam PF00849 RNA pseudouridylate synthase 67 197 2.0E-17 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 Gene3D G3DSA:3.10.290.10 1 59 3.3E-22 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 71 231 4.8E-61 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 SMART SM00363 3 64 3.0E-10 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_15085 575e4855e5fc669acd955796cbf17a93 307 Gene3D G3DSA:3.30.70.580 69 227 2.7E-52 T 14-10-2018 RY45_18830 c2fa712730ecd853b51306dae808f107 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.4E-32 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_18830 c2fa712730ecd853b51306dae808f107 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RY45_18830 c2fa712730ecd853b51306dae808f107 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.3E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_18830 c2fa712730ecd853b51306dae808f107 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.3E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_18830 c2fa712730ecd853b51306dae808f107 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.3E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_18830 c2fa712730ecd853b51306dae808f107 90 SMART SM00411 1 90 7.2E-42 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RY45_18830 c2fa712730ecd853b51306dae808f107 90 SUPERFAMILY SSF47729 1 90 3.53E-32 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RY45_18830 c2fa712730ecd853b51306dae808f107 90 Gene3D G3DSA:4.10.520.10 1 90 7.6E-37 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RY45_08610 6cffbc066e3a1c3e9ac6ca2e03c199c2 170 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 56 93 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RY45_08610 6cffbc066e3a1c3e9ac6ca2e03c199c2 170 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 11 152 46.048 T 14-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 RY45_08610 6cffbc066e3a1c3e9ac6ca2e03c199c2 170 Gene3D G3DSA:3.40.140.10 1 164 9.7E-63 T 14-10-2018 RY45_08610 6cffbc066e3a1c3e9ac6ca2e03c199c2 170 Pfam PF14437 MafB19-like deaminase 6 152 1.4E-31 T 14-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 RY45_08610 6cffbc066e3a1c3e9ac6ca2e03c199c2 170 SUPERFAMILY SSF53927 5 156 3.68E-57 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 SUPERFAMILY SSF54862 448 547 2.56E-25 T 14-10-2018 RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 SUPERFAMILY SSF51905 1 446 4.44E-51 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 SUPERFAMILY SSF54373 205 304 1.41E-30 T 14-10-2018 RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 336 355 7.8E-5 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 7.8E-5 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 Gene3D G3DSA:3.30.9.90 74 448 3.4E-171 T 14-10-2018 RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 52 1.3E-7 T 14-10-2018 RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 Gene3D G3DSA:3.30.70.20 449 542 4.2E-34 T 14-10-2018 RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 Gene3D G3DSA:3.50.50.60 7 384 3.4E-171 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_12795 8ef14ff425e7f7a4d63b81ce2afa8eff 547 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 444 544 9.9E-46 T 14-10-2018 RY45_12775 40f27a2b872298db97f649b167042f62 427 Gene3D G3DSA:3.65.10.10 242 418 1.1E-153 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RY45_12775 40f27a2b872298db97f649b167042f62 427 Gene3D G3DSA:3.65.10.10 20 224 1.1E-153 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RY45_12775 40f27a2b872298db97f649b167042f62 427 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 14-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RY45_12775 40f27a2b872298db97f649b167042f62 427 SUPERFAMILY SSF55205 1 423 7.85E-144 T 14-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RY45_12775 40f27a2b872298db97f649b167042f62 427 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 420 5.3E-159 T 14-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RY45_12775 40f27a2b872298db97f649b167042f62 427 ProSitePatterns PS00885 EPSP synthase signature 2. 338 356 - T 14-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RY45_12775 40f27a2b872298db97f649b167042f62 427 PIRSF PIRSF000505 3 427 2.6E-156 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RY45_12775 40f27a2b872298db97f649b167042f62 427 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 424 6.3E-142 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RY45_12775 40f27a2b872298db97f649b167042f62 427 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 426 35.601 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 SMART SM00448 6 117 1.8E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 Pfam PF00072 Response regulator receiver domain 8 116 7.9E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 SUPERFAMILY SSF52172 4 189 2.42E-43 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 Gene3D G3DSA:1.10.8.60 317 395 2.6E-24 T 14-10-2018 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 Pfam PF02954 Bacterial regulatory protein, Fis family 422 458 1.7E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 Gene3D G3DSA:3.40.50.300 136 316 4.7E-63 T 14-10-2018 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 SUPERFAMILY SSF52540 145 388 7.41E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 SMART SM00382 165 308 5.4E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 Gene3D G3DSA:1.10.10.60 417 459 9.4E-10 T 14-10-2018 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 Gene3D G3DSA:3.40.50.2300 3 135 2.4E-35 T 14-10-2018 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 Pfam PF00158 Sigma-54 interaction domain 146 311 1.0E-65 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_05525 e87a7ce7c766ea826f01f8e3184d2841 468 SUPERFAMILY SSF46689 358 458 7.17E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 Gene3D G3DSA:2.130.10.10 20 155 2.0E-11 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 SMART SM00320 190 227 5.1 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 SMART SM00320 274 320 10.0 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 SMART SM00320 230 271 2.9 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 SMART SM00320 21 60 24.0 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 SMART SM00320 149 187 1.5E-5 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 SMART SM00320 107 146 42.0 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 SUPERFAMILY SSF50998 25 321 6.28E-52 T 14-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 Pfam PF00400 WD domain, G-beta repeat 155 187 2.9E-4 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 174 188 - T 14-10-2018 IPR019775 WD40 repeat, conserved site RY45_05515 fe685b044a15c1fe03bd78b73a04d1b5 322 Gene3D G3DSA:2.130.10.10 156 322 3.4E-29 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RY45_14575 f8a0a028afba3caf86280bb809f94b68 253 SUPERFAMILY SSF53448 3 251 2.7E-65 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_14575 f8a0a028afba3caf86280bb809f94b68 253 Gene3D G3DSA:3.90.550.10 1 253 1.1E-95 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_14575 f8a0a028afba3caf86280bb809f94b68 253 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 252 45.465 T 14-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 RY45_14575 f8a0a028afba3caf86280bb809f94b68 253 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 245 5.2E-117 T 14-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 RY45_14575 f8a0a028afba3caf86280bb809f94b68 253 Pfam PF02348 Cytidylyltransferase 4 225 2.0E-65 T 14-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 RY45_14560 dd4be54aaff98b76c32278b9721959e4 184 PIRSF PIRSF000847 1 182 2.7E-48 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RY45_14560 dd4be54aaff98b76c32278b9721959e4 184 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 48 70 - T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RY45_14560 dd4be54aaff98b76c32278b9721959e4 184 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 179 1.7E-59 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RY45_14560 dd4be54aaff98b76c32278b9721959e4 184 Gene3D G3DSA:1.20.120.1760 2 177 3.3E-18 T 14-10-2018 RY45_14560 dd4be54aaff98b76c32278b9721959e4 184 Pfam PF01066 CDP-alcohol phosphatidyltransferase 3 70 4.4E-19 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RY45_07180 d74c96bfbb047fc6e224cd6eef36af4f 363 SMART SM00471 169 317 2.6E-6 T 14-10-2018 IPR003607 HD/PDEase domain RY45_07180 d74c96bfbb047fc6e224cd6eef36af4f 363 Pfam PF01966 HD domain 174 307 1.7E-18 T 14-10-2018 IPR006674 HD domain RY45_07180 d74c96bfbb047fc6e224cd6eef36af4f 363 SUPERFAMILY SSF55781 8 145 2.7E-13 T 14-10-2018 RY45_07180 d74c96bfbb047fc6e224cd6eef36af4f 363 SUPERFAMILY SSF109604 167 344 1.92E-37 T 14-10-2018 RY45_07180 d74c96bfbb047fc6e224cd6eef36af4f 363 Gene3D G3DSA:1.10.3210.10 153 360 3.4E-67 T 14-10-2018 RY45_07180 d74c96bfbb047fc6e224cd6eef36af4f 363 Gene3D G3DSA:3.30.450.40 3 148 1.8E-8 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 359 3.9E-78 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 13 439 8.1E-170 T 14-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 22 439 2.5E-197 T 14-10-2018 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 93 9.1E-10 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 SUPERFAMILY SSF52540 96 365 3.15E-95 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 350 359 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 SUPERFAMILY SSF47917 372 439 6.28E-5 T 14-10-2018 RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 SMART SM00382 162 343 6.9E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_13995 2d8e28311b347abcef9fefb8b76b4074 440 Gene3D G3DSA:3.40.50.12240 18 439 2.1E-150 T 14-10-2018 RY45_21735 ead9c4821d4fa939df2376bd0b3020e4 74 SUPERFAMILY SSF47336 8 69 5.18E-7 T 14-10-2018 IPR036736 ACP-like superfamily RY45_21735 ead9c4821d4fa939df2376bd0b3020e4 74 Gene3D G3DSA:1.10.1200.10 2 72 3.1E-10 T 14-10-2018 IPR036736 ACP-like superfamily RY45_12575 d086ac788a47d5c06073e0585dc1de45 208 Gene3D G3DSA:3.30.420.10 27 200 1.0E-31 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_12575 d086ac788a47d5c06073e0585dc1de45 208 SMART SM00479 30 203 1.2E-22 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_12575 d086ac788a47d5c06073e0585dc1de45 208 SUPERFAMILY SSF53098 29 199 7.59E-34 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_12575 d086ac788a47d5c06073e0585dc1de45 208 Pfam PF00929 Exonuclease 32 194 1.6E-16 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_00260 1e89c6bd1606581217558b3570d7a652 174 Gene3D G3DSA:1.20.1260.10 1 174 1.4E-51 T 14-10-2018 IPR012347 Ferritin-like RY45_00260 1e89c6bd1606581217558b3570d7a652 174 Pfam PF00210 Ferritin-like domain 7 143 4.8E-40 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RY45_00260 1e89c6bd1606581217558b3570d7a652 174 SUPERFAMILY SSF47240 1 159 3.25E-59 T 14-10-2018 IPR009078 Ferritin-like superfamily RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 8.3E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 8.3E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 8.3E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 Gene3D G3DSA:3.40.190.290 90 293 1.5E-67 T 14-10-2018 RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 Pfam PF03466 LysR substrate binding domain 87 291 2.2E-45 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 Gene3D G3DSA:1.10.10.10 3 89 1.7E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.8E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 SUPERFAMILY SSF46785 4 86 2.16E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_12345 866bde7b1b1d041dc783fb47e3274375 317 SUPERFAMILY SSF53850 88 297 2.35E-48 T 14-10-2018 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 SUPERFAMILY SSF48179 204 301 2.93E-34 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 Gene3D G3DSA:3.40.50.720 1 202 1.9E-77 T 14-10-2018 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 423 1.7E-139 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 SUPERFAMILY SSF51735 1 195 3.95E-56 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 187 1.0E-63 T 14-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 7.9E-39 T 14-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 PIRSF PIRSF500134 1 445 3.8E-186 T 14-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 Gene3D G3DSA:3.40.50.720 235 448 2.4E-76 T 14-10-2018 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 SMART SM00984 323 427 3.4E-48 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 SUPERFAMILY SSF52413 313 438 1.44E-38 T 14-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 323 427 1.7E-29 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 Gene3D G3DSA:1.20.5.100 203 234 1.8E-18 T 14-10-2018 RY45_05470 43ccbc52cf9c0622e1e5be5812c3b94c 448 PIRSF PIRSF000124 1 442 2.7E-146 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 SUPERFAMILY SSF56059 103 296 8.75E-46 T 14-10-2018 RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 SUPERFAMILY SSF51246 301 369 3.14E-17 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 SUPERFAMILY SSF52440 7 101 2.16E-24 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 7 360 2.7E-104 T 14-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 Gene3D G3DSA:3.40.50.20 1 112 1.8E-38 T 14-10-2018 RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 Gene3D G3DSA:3.30.1490.20 113 179 2.3E-17 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 Gene3D G3DSA:3.30.470.20 180 370 2.6E-61 T 14-10-2018 RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 Pfam PF02222 ATP-grasp domain 113 276 6.8E-39 T 14-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RY45_00335 bfc8adacda3b7117f9d868585fd314a4 374 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 7 355 38.139 T 14-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RY45_18670 1a2f869ef7e8c6415e16fa6f3f955e67 378 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 360 1.4E-104 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RY45_18670 1a2f869ef7e8c6415e16fa6f3f955e67 378 PIRSF PIRSF000267 2 377 4.1E-118 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RY45_18670 1a2f869ef7e8c6415e16fa6f3f955e67 378 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 378 2.6E-159 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RY45_00435 0ec12933e0526c664540a068ae650e11 272 Pfam PF01471 Putative peptidoglycan binding domain 9 63 3.8E-12 T 14-10-2018 IPR002477 Peptidoglycan binding-like RY45_00435 0ec12933e0526c664540a068ae650e11 272 Gene3D G3DSA:1.10.101.10 1 67 1.3E-17 T 14-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RY45_00435 0ec12933e0526c664540a068ae650e11 272 SUPERFAMILY SSF47090 3 63 7.59E-15 T 14-10-2018 IPR036365 PGBD-like superfamily RY45_00435 0ec12933e0526c664540a068ae650e11 272 Pfam PF11860 N-acetylmuramidase 88 260 9.0E-63 T 14-10-2018 IPR024408 N-acetylmuramidase RY45_05570 3f6d4db0ec06ca7b4622056f090a56a9 82 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_05570 3f6d4db0ec06ca7b4622056f090a56a9 82 Pfam PF12838 4Fe-4S dicluster domain 8 57 3.4E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_05570 3f6d4db0ec06ca7b4622056f090a56a9 82 SUPERFAMILY SSF54862 4 76 2.42E-19 T 14-10-2018 RY45_05570 3f6d4db0ec06ca7b4622056f090a56a9 82 Gene3D G3DSA:3.30.70.20 2 82 1.3E-34 T 14-10-2018 RY45_11985 4ac51814d967dafdb1168ea789cd598a 442 TIGRFAM TIGR03314 Se_ssnA: putative selenium metabolism protein SsnA 2 438 8.2E-218 T 14-10-2018 IPR017700 Putative aminohydrolase SsnA RY45_11985 4ac51814d967dafdb1168ea789cd598a 442 Gene3D G3DSA:3.20.20.140 57 361 1.9E-75 T 14-10-2018 RY45_11985 4ac51814d967dafdb1168ea789cd598a 442 SUPERFAMILY SSF51338 2 435 6.77E-26 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_11985 4ac51814d967dafdb1168ea789cd598a 442 Pfam PF01979 Amidohydrolase family 53 410 4.2E-43 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_11985 4ac51814d967dafdb1168ea789cd598a 442 Gene3D G3DSA:2.30.40.10 8 416 1.9E-75 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_11985 4ac51814d967dafdb1168ea789cd598a 442 SUPERFAMILY SSF51556 56 353 1.2E-53 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_18115 6310e590012656f76734885f75429b8d 526 SMART SM00471 337 487 1.4E-7 T 14-10-2018 IPR003607 HD/PDEase domain RY45_18115 6310e590012656f76734885f75429b8d 526 SUPERFAMILY SSF109604 328 517 4.4E-33 T 14-10-2018 RY45_18115 6310e590012656f76734885f75429b8d 526 Pfam PF11849 Domain of unknown function (DUF3369) 155 319 1.3E-44 T 14-10-2018 IPR021800 Domain of unknown function DUF3369 RY45_18115 6310e590012656f76734885f75429b8d 526 Gene3D G3DSA:1.10.3210.10 317 522 1.3E-69 T 14-10-2018 RY45_18115 6310e590012656f76734885f75429b8d 526 SMART SM00448 33 155 0.009 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_18115 6310e590012656f76734885f75429b8d 526 Pfam PF00072 Response regulator receiver domain 35 145 1.7E-8 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_18115 6310e590012656f76734885f75429b8d 526 Gene3D G3DSA:3.40.50.2300 30 160 3.6E-14 T 14-10-2018 RY45_18115 6310e590012656f76734885f75429b8d 526 SUPERFAMILY SSF52172 29 164 7.68E-14 T 14-10-2018 IPR011006 CheY-like superfamily RY45_18115 6310e590012656f76734885f75429b8d 526 Pfam PF01966 HD domain 342 477 1.4E-17 T 14-10-2018 IPR006674 HD domain RY45_18725 f704c84867f44d0d3db55d7652cd0a19 221 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 125 153 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_18725 f704c84867f44d0d3db55d7652cd0a19 221 Gene3D G3DSA:2.160.10.10 3 217 2.8E-59 T 14-10-2018 RY45_18725 f704c84867f44d0d3db55d7652cd0a19 221 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 116 150 2.8E-10 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_18725 f704c84867f44d0d3db55d7652cd0a19 221 SUPERFAMILY SSF51161 59 204 9.84E-42 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_11580 a7f9c466c26fa739ccdd104a77a51eda 213 Gene3D G3DSA:3.40.50.300 2 208 4.3E-58 T 14-10-2018 RY45_11580 a7f9c466c26fa739ccdd104a77a51eda 213 Pfam PF02223 Thymidylate kinase 7 196 3.0E-53 T 14-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RY45_11580 a7f9c466c26fa739ccdd104a77a51eda 213 Hamap MF_00165 Thymidylate kinase [tmk]. 3 204 27.472 T 14-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RY45_11580 a7f9c466c26fa739ccdd104a77a51eda 213 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 14-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RY45_11580 a7f9c466c26fa739ccdd104a77a51eda 213 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 196 7.0E-59 T 14-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RY45_11580 a7f9c466c26fa739ccdd104a77a51eda 213 SUPERFAMILY SSF52540 1 204 1.03E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14485 0447eb0f29ec9f6d5978986103856a2c 165 Gene3D G3DSA:2.40.100.10 1 164 2.2E-64 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily RY45_14485 0447eb0f29ec9f6d5978986103856a2c 165 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 162 1.0E-47 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RY45_14485 0447eb0f29ec9f6d5978986103856a2c 165 PIRSF PIRSF001467 1 163 2.9E-27 T 14-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 RY45_14485 0447eb0f29ec9f6d5978986103856a2c 165 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 14-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RY45_14485 0447eb0f29ec9f6d5978986103856a2c 165 SUPERFAMILY SSF50891 1 163 2.05E-56 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily RY45_14485 0447eb0f29ec9f6d5978986103856a2c 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 4.1E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RY45_14485 0447eb0f29ec9f6d5978986103856a2c 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 4.1E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RY45_14485 0447eb0f29ec9f6d5978986103856a2c 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 4.1E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 58 253 9.7E-85 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 175 187 5.2E-24 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 243 253 5.2E-24 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 126 140 5.2E-24 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 54 63 5.2E-24 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 154 166 5.2E-24 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 114 126 5.2E-24 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 230 242 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 75 95 1.1E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 203 224 1.1E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 56 75 1.1E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 95 114 1.1E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 182 202 1.1E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 227 252 1.1E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 182 197 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_07245 2cb5cb9e3fd0a382c4e03563d140435f 259 Pfam PF00813 FliP family 58 249 1.6E-79 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_10735 4ae16f67731201e406999f818c2122b1 462 Pfam PF00939 Sodium:sulfate symporter transmembrane region 40 461 3.2E-53 T 14-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 RY45_10735 4ae16f67731201e406999f818c2122b1 462 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 37 454 4.0E-111 T 14-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 RY45_10735 4ae16f67731201e406999f818c2122b1 462 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 408 424 - T 14-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 RY45_04235 60433d672cd26194d1015f03ae2dbce6 186 SUPERFAMILY SSF51161 7 139 7.76E-33 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_04235 60433d672cd26194d1015f03ae2dbce6 186 Gene3D G3DSA:2.160.10.10 1 183 3.1E-48 T 14-10-2018 RY45_04235 60433d672cd26194d1015f03ae2dbce6 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 79 111 4.4E-6 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_04235 60433d672cd26194d1015f03ae2dbce6 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 44 3.4E-5 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_07510 d06219c8ee4f9d25ed44021aa0a42f37 238 Pfam PF13580 SIS domain 3 138 6.4E-36 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_07510 d06219c8ee4f9d25ed44021aa0a42f37 238 Gene3D G3DSA:3.40.50.10490 1 232 2.0E-67 T 14-10-2018 RY45_07510 d06219c8ee4f9d25ed44021aa0a42f37 238 SUPERFAMILY SSF53697 2 199 5.26E-25 T 14-10-2018 RY45_11385 c9e750a3ddb77e109c60099de861f497 204 Gene3D G3DSA:1.10.760.10 44 204 2.3E-71 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_11385 c9e750a3ddb77e109c60099de861f497 204 SUPERFAMILY SSF46626 21 200 4.64E-30 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_11385 c9e750a3ddb77e109c60099de861f497 204 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 7 183 1.1E-78 T 14-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RY45_11385 c9e750a3ddb77e109c60099de861f497 204 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 7 182 1.1E-81 T 14-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RY45_07130 1e3e2fef52905ce66e3de43dacb0a95c 217 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_07130 1e3e2fef52905ce66e3de43dacb0a95c 217 Gene3D G3DSA:1.10.357.10 1 209 3.8E-63 T 14-10-2018 RY45_07130 1e3e2fef52905ce66e3de43dacb0a95c 217 SUPERFAMILY SSF46689 4 74 2.26E-18 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_07130 1e3e2fef52905ce66e3de43dacb0a95c 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.8E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_07130 1e3e2fef52905ce66e3de43dacb0a95c 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.8E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_07130 1e3e2fef52905ce66e3de43dacb0a95c 217 SUPERFAMILY SSF48498 79 210 3.33E-41 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_07130 1e3e2fef52905ce66e3de43dacb0a95c 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 3.0E-14 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_05275 0577e2db7199f30aa3fa7231926554f6 284 SUPERFAMILY SSF81901 48 113 7.32E-10 T 14-10-2018 RY45_05275 0577e2db7199f30aa3fa7231926554f6 284 SUPERFAMILY SSF53955 141 279 1.75E-42 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_05275 0577e2db7199f30aa3fa7231926554f6 284 Gene3D G3DSA:1.10.530.10 144 282 8.7E-39 T 14-10-2018 RY45_05275 0577e2db7199f30aa3fa7231926554f6 284 Gene3D G3DSA:1.25.40.10 36 120 6.2E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_05275 0577e2db7199f30aa3fa7231926554f6 284 Pfam PF01464 Transglycosylase SLT domain 165 268 1.5E-26 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_08690 5764e2e60944c28364303668bb2e278e 262 SMART SM00079 32 254 1.0E-4 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RY45_08690 5764e2e60944c28364303668bb2e278e 262 Gene3D G3DSA:3.40.190.10 117 214 3.3E-77 T 14-10-2018 RY45_08690 5764e2e60944c28364303668bb2e278e 262 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 55 68 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site RY45_08690 5764e2e60944c28364303668bb2e278e 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 253 3.5E-67 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_08690 5764e2e60944c28364303668bb2e278e 262 SUPERFAMILY SSF53850 1 253 3.63E-75 T 14-10-2018 RY45_08690 5764e2e60944c28364303668bb2e278e 262 SMART SM00062 32 255 6.2E-67 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_08690 5764e2e60944c28364303668bb2e278e 262 Gene3D G3DSA:3.40.190.10 33 252 3.3E-77 T 14-10-2018 RY45_21930 40d54e77e42152ca68ef217396154873 238 Pfam PF01138 3' exoribonuclease family, domain 1 11 141 1.4E-24 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_21930 40d54e77e42152ca68ef217396154873 238 Gene3D G3DSA:3.30.230.70 10 238 5.5E-65 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_21930 40d54e77e42152ca68ef217396154873 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 3 237 1.8E-114 T 14-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 RY45_21930 40d54e77e42152ca68ef217396154873 238 SUPERFAMILY SSF55666 154 237 5.5E-26 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_21930 40d54e77e42152ca68ef217396154873 238 Pfam PF03725 3' exoribonuclease family, domain 2 159 223 6.2E-12 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RY45_21930 40d54e77e42152ca68ef217396154873 238 SUPERFAMILY SSF54211 3 182 3.34E-45 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_21930 40d54e77e42152ca68ef217396154873 238 Hamap MF_00564 Ribonuclease PH [rph]. 12 238 44.518 T 14-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 RY45_21930 40d54e77e42152ca68ef217396154873 238 ProSitePatterns PS01277 Ribonuclease PH signature. 117 130 - T 14-10-2018 IPR018336 Ribonuclease PH, conserved site RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 SMART SM00304 382 436 2.5E-12 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 SUPERFAMILY SSF58104 404 713 2.49E-76 T 14-10-2018 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 Pfam PF00672 HAMP domain 383 432 1.1E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 Pfam PF02743 Cache domain 49 333 5.7E-15 T 14-10-2018 IPR033479 Double Cache domain 1 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 Gene3D G3DSA:1.10.287.950 381 713 2.3E-73 T 14-10-2018 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 SMART SM00283 451 712 8.6E-67 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 497 679 8.0E-45 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 Gene3D G3DSA:3.30.450.20 88 238 1.5E-30 T 14-10-2018 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 479 508 5.8E-5 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_06155 0c35f5058151dc7fa14b8a9644689eab 713 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 578 607 5.8E-5 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_10255 b4b906aff4646c61c725bcbf9aeecc12 82 Gene3D G3DSA:3.30.910.10 1 78 6.1E-27 T 14-10-2018 IPR036687 DinI-like superfamily RY45_10255 b4b906aff4646c61c725bcbf9aeecc12 82 SUPERFAMILY SSF54857 1 77 1.96E-23 T 14-10-2018 IPR036687 DinI-like superfamily RY45_10255 b4b906aff4646c61c725bcbf9aeecc12 82 Pfam PF06183 DinI-like family 14 76 3.4E-24 T 14-10-2018 IPR010391 DNA damage-inducible protein DinI-like RY45_04430 cc0638ee3adb829ee1fe1ffb8577835f 105 SUPERFAMILY SSF54913 2 104 2.67E-37 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_04430 cc0638ee3adb829ee1fe1ffb8577835f 105 Gene3D G3DSA:3.30.70.120 1 105 1.2E-40 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_04430 cc0638ee3adb829ee1fe1ffb8577835f 105 Pfam PF03091 CutA1 divalent ion tolerance protein 5 102 4.2E-36 T 14-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 RY45_08085 895dcb28439cae3ddae4de26e27d4b65 218 Gene3D G3DSA:3.90.1490.10 123 217 2.0E-18 T 14-10-2018 RY45_08085 895dcb28439cae3ddae4de26e27d4b65 218 Pfam PF01902 Diphthamide synthase 3 209 3.0E-26 T 14-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 RY45_08085 895dcb28439cae3ddae4de26e27d4b65 218 SUPERFAMILY SSF52402 1 213 1.2E-53 T 14-10-2018 RY45_08085 895dcb28439cae3ddae4de26e27d4b65 218 Gene3D G3DSA:3.40.50.620 1 122 2.0E-20 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_04690 ab9759961a1e18131f23132521b7eaf7 184 SUPERFAMILY SSF81342 8 169 4.32E-25 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RY45_04690 ab9759961a1e18131f23132521b7eaf7 184 Gene3D G3DSA:1.20.950.20 28 158 5.8E-6 T 14-10-2018 RY45_04690 ab9759961a1e18131f23132521b7eaf7 184 Pfam PF01292 Prokaryotic cytochrome b561 10 169 3.3E-22 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RY45_04520 2d74ac7a6f962c76de5114cc644fb28c 636 Gene3D G3DSA:3.20.20.70 206 426 1.1E-9 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_04520 2d74ac7a6f962c76de5114cc644fb28c 636 SUPERFAMILY SSF51445 218 523 3.76E-33 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_21490 185af66544ae1794cf1ff58309db83ec 474 SUPERFAMILY SSF158791 44 157 6.8E-23 T 14-10-2018 RY45_21490 185af66544ae1794cf1ff58309db83ec 474 Pfam PF00571 CBS domain 225 278 4.5E-6 T 14-10-2018 IPR000644 CBS domain RY45_21490 185af66544ae1794cf1ff58309db83ec 474 Pfam PF03448 MgtE intracellular N domain 59 156 2.9E-22 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RY45_21490 185af66544ae1794cf1ff58309db83ec 474 TIGRFAM TIGR00400 mgtE: magnesium transporter 47 473 3.8E-72 T 14-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 RY45_21490 185af66544ae1794cf1ff58309db83ec 474 SUPERFAMILY SSF161093 302 473 1.44E-47 T 14-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 RY45_21490 185af66544ae1794cf1ff58309db83ec 474 Gene3D G3DSA:3.10.580.10 158 284 7.4E-34 T 14-10-2018 RY45_21490 185af66544ae1794cf1ff58309db83ec 474 SMART SM00924 58 161 6.7E-32 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RY45_21490 185af66544ae1794cf1ff58309db83ec 474 SUPERFAMILY SSF54631 160 300 2.29E-23 T 14-10-2018 RY45_21490 185af66544ae1794cf1ff58309db83ec 474 Pfam PF01769 Divalent cation transporter 345 466 4.2E-24 T 14-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RY45_21490 185af66544ae1794cf1ff58309db83ec 474 Gene3D G3DSA:1.25.60.10 32 156 3.9E-16 T 14-10-2018 IPR038076 MgtE, N-terminal domain superfamily RY45_21490 185af66544ae1794cf1ff58309db83ec 474 Gene3D G3DSA:1.10.357.20 299 473 1.4E-47 T 14-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain RY45_21740 ca98c8e9c0bbcfa314a7b083da030d32 560 Gene3D G3DSA:3.40.50.1000 199 364 2.2E-47 T 14-10-2018 IPR023214 HAD superfamily RY45_21740 ca98c8e9c0bbcfa314a7b083da030d32 560 SUPERFAMILY SSF56784 200 333 3.92E-10 T 14-10-2018 IPR036412 HAD-like superfamily RY45_21740 ca98c8e9c0bbcfa314a7b083da030d32 560 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 201 322 5.1E-15 T 14-10-2018 IPR010033 HAD-superfamily phosphatase, subfamily IIIC RY45_21740 ca98c8e9c0bbcfa314a7b083da030d32 560 Gene3D G3DSA:3.40.630.30 402 528 2.7E-5 T 14-10-2018 RY45_21740 ca98c8e9c0bbcfa314a7b083da030d32 560 TIGRFAM TIGR01686 FkbH: FkbH domain 198 521 8.7E-77 T 14-10-2018 IPR010037 FkbH domain RY45_06870 e6d32062fba9392c8759f8007396f9a4 88 Pfam PF01381 Helix-turn-helix 12 57 7.1E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_06870 e6d32062fba9392c8759f8007396f9a4 88 SUPERFAMILY SSF47413 4 62 8.85E-11 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_06870 e6d32062fba9392c8759f8007396f9a4 88 Gene3D G3DSA:1.10.260.40 4 87 6.2E-23 T 14-10-2018 RY45_06870 e6d32062fba9392c8759f8007396f9a4 88 SMART SM00530 11 68 1.3E-5 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_13980 e81fcc4b138a06b265c78a6d69d3fc4d 123 Gene3D G3DSA:3.30.1460.10 1 123 1.3E-44 T 14-10-2018 RY45_13980 e81fcc4b138a06b265c78a6d69d3fc4d 123 TIGRFAM TIGR02503 type_III_SycN: type III secretion chaperone SycN 4 122 9.8E-39 T 14-10-2018 IPR012673 Type III secretion system chaperone SycN GO:0009306 RY45_13980 e81fcc4b138a06b265c78a6d69d3fc4d 123 SUPERFAMILY SSF69635 2 121 1.62E-41 T 14-10-2018 RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 SUPERFAMILY SSF46785 1 85 4.66E-24 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 Gene3D G3DSA:1.10.10.10 1 90 5.9E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 Pfam PF03466 LysR substrate binding domain 88 290 2.1E-36 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 SUPERFAMILY SSF53850 91 289 1.03E-31 T 14-10-2018 RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 Gene3D G3DSA:3.40.190.10 91 286 2.0E-53 T 14-10-2018 RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 Gene3D G3DSA:3.40.190.10 164 269 2.0E-53 T 14-10-2018 RY45_06040 3045ac6f3081f93ea726c9f73b73d282 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.1E-23 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16055 755e506adc07a5872f17d10a6885f6df 418 Pfam PF00709 Adenylosuccinate synthetase 4 416 2.3E-126 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RY45_16055 755e506adc07a5872f17d10a6885f6df 418 SUPERFAMILY SSF52540 1 417 6.69E-118 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16055 755e506adc07a5872f17d10a6885f6df 418 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 418 138.604 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RY45_16055 755e506adc07a5872f17d10a6885f6df 418 Gene3D G3DSA:3.90.170.10 266 418 4.7E-49 T 14-10-2018 RY45_16055 755e506adc07a5872f17d10a6885f6df 418 SMART SM00788 3 417 7.5E-172 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RY45_16055 755e506adc07a5872f17d10a6885f6df 418 Gene3D G3DSA:3.40.440.10 6 253 8.9E-70 T 14-10-2018 RY45_16055 755e506adc07a5872f17d10a6885f6df 418 Gene3D G3DSA:1.10.300.10 99 197 8.9E-70 T 14-10-2018 RY45_18900 d03fa57c0edd9d25f5025d3d790ae09d 424 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 2.2E-23 T 14-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 RY45_18900 d03fa57c0edd9d25f5025d3d790ae09d 424 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 418 3.2E-151 T 14-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 RY45_18900 d03fa57c0edd9d25f5025d3d790ae09d 424 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 418 1.0E-73 T 14-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 RY45_18900 d03fa57c0edd9d25f5025d3d790ae09d 424 Pfam PF07670 Nucleoside recognition 99 195 2.1E-8 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RY45_09200 2cf7ca0ffe8070b0bffad7d78b782f99 376 Gene3D G3DSA:3.20.20.140 57 341 2.3E-124 T 14-10-2018 RY45_09200 2cf7ca0ffe8070b0bffad7d78b782f99 376 PIRSF PIRSF001238 1 376 6.3E-143 T 14-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 RY45_09200 2cf7ca0ffe8070b0bffad7d78b782f99 376 Pfam PF01979 Amidohydrolase family 266 372 5.5E-11 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_09200 2cf7ca0ffe8070b0bffad7d78b782f99 376 SUPERFAMILY SSF51556 56 345 7.09E-66 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_09200 2cf7ca0ffe8070b0bffad7d78b782f99 376 Gene3D G3DSA:2.30.40.10 4 374 2.3E-124 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_09200 2cf7ca0ffe8070b0bffad7d78b782f99 376 SUPERFAMILY SSF51338 1 374 1.81E-15 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_09200 2cf7ca0ffe8070b0bffad7d78b782f99 376 TIGRFAM TIGR01975 isoAsp_dipep: beta-aspartyl peptidase 2 373 1.1E-118 T 14-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 RY45_08180 6a3c2db0808edb844d1419936677333c 206 Pfam PF06042 Nucleotidyltransferase 45 203 1.1E-53 T 14-10-2018 IPR009267 Putative nucleotidyltransferase RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 SUPERFAMILY SSF50156 750 829 4.13E-6 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Gene3D G3DSA:3.90.226.10 836 1055 1.7E-47 T 14-10-2018 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 SMART SM00245 830 1019 5.3E-4 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Gene3D G3DSA:2.120.10.60 12 294 1.2E-51 T 14-10-2018 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Pfam PF03572 Peptidase family S41 857 1018 2.2E-18 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Pfam PF14684 Tricorn protease C1 domain 672 734 1.2E-19 T 14-10-2018 IPR028204 Tricorn protease C1 domain RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Pfam PF07676 WD40-like Beta Propeller Repeat 26 42 0.0036 T 14-10-2018 IPR011659 WD40-like Beta Propeller RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Pfam PF07676 WD40-like Beta Propeller Repeat 409 425 0.041 T 14-10-2018 IPR011659 WD40-like Beta Propeller RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Pfam PF07676 WD40-like Beta Propeller Repeat 216 240 0.031 T 14-10-2018 IPR011659 WD40-like Beta Propeller RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Pfam PF07676 WD40-like Beta Propeller Repeat 59 85 0.0054 T 14-10-2018 IPR011659 WD40-like Beta Propeller RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Pfam PF07676 WD40-like Beta Propeller Repeat 496 518 0.0047 T 14-10-2018 IPR011659 WD40-like Beta Propeller RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Gene3D G3DSA:2.30.42.10 758 834 2.1E-6 T 14-10-2018 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 PIRSF PIRSF036421 563 1052 2.6E-87 T 14-10-2018 IPR012393 Tricorn protease GO:0008236 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 PIRSF PIRSF036421 12 533 2.5E-73 T 14-10-2018 IPR012393 Tricorn protease GO:0008236 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 SUPERFAMILY SSF69304 26 292 3.01E-34 T 14-10-2018 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 SUPERFAMILY SSF50969 392 652 9.02E-11 T 14-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 SUPERFAMILY SSF52096 666 1044 1.24E-50 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Gene3D G3DSA:3.30.750.44 666 735 1.0E-13 T 14-10-2018 RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 Gene3D G3DSA:2.120.10.30 377 524 2.0E-16 T 14-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RY45_03525 0f059f4655efc6f94f443c820fb9fc31 1056 SUPERFAMILY SSF50969 197 483 2.9E-23 T 14-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like RY45_06680 228063cb049311bdb624db77d287183c 229 Gene3D G3DSA:3.40.50.2300 1 128 3.3E-40 T 14-10-2018 RY45_06680 228063cb049311bdb624db77d287183c 229 Pfam PF00072 Response regulator receiver domain 5 116 3.6E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_06680 228063cb049311bdb624db77d287183c 229 SUPERFAMILY SSF52172 3 125 1.42E-43 T 14-10-2018 IPR011006 CheY-like superfamily RY45_06680 228063cb049311bdb624db77d287183c 229 Gene3D G3DSA:1.10.10.10 129 229 2.6E-41 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06680 228063cb049311bdb624db77d287183c 229 SUPERFAMILY SSF46894 129 226 4.54E-32 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_06680 228063cb049311bdb624db77d287183c 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 8.8E-112 T 14-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 RY45_06680 228063cb049311bdb624db77d287183c 229 SMART SM00862 150 225 1.4E-27 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_06680 228063cb049311bdb624db77d287183c 229 SMART SM00448 3 116 2.0E-47 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_06680 228063cb049311bdb624db77d287183c 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 1.0E-28 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_03100 5faab167ee7e78478734453197114d9f 448 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 89 446 1.1E-98 T 14-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RY45_03100 5faab167ee7e78478734453197114d9f 448 Hamap MF_01935 Isochorismate synthase MenF [menF]. 2 448 29.225 T 14-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RY45_03100 5faab167ee7e78478734453197114d9f 448 SUPERFAMILY SSF56322 21 448 1.83E-92 T 14-10-2018 IPR005801 ADC synthase GO:0009058 RY45_03100 5faab167ee7e78478734453197114d9f 448 Gene3D G3DSA:3.60.120.10 3 448 2.7E-122 T 14-10-2018 IPR005801 ADC synthase GO:0009058 RY45_03100 5faab167ee7e78478734453197114d9f 448 Pfam PF00425 chorismate binding enzyme 179 439 1.3E-63 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RY45_20345 d655b2cb1613e865e23dbe4ce5b9c45f 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 18 256 9.9E-57 T 14-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 RY45_20345 d655b2cb1613e865e23dbe4ce5b9c45f 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 25 46 3.4E-23 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_20345 d655b2cb1613e865e23dbe4ce5b9c45f 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 183 205 3.4E-23 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_20345 d655b2cb1613e865e23dbe4ce5b9c45f 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 205 224 3.4E-23 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_20345 d655b2cb1613e865e23dbe4ce5b9c45f 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 84 103 3.4E-23 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_20345 d655b2cb1613e865e23dbe4ce5b9c45f 260 Pfam PF01311 Bacterial export proteins, family 1 18 247 1.3E-61 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 SUPERFAMILY SSF47226 5 126 4.58E-27 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 SUPERFAMILY SSF47384 325 384 1.8E-9 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Gene3D G3DSA:2.40.50.180 592 650 8.9E-28 T 14-10-2018 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Gene3D G3DSA:1.10.287.560 324 383 1.9E-5 T 14-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 547 1.7E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 523 1.7E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 487 1.7E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 566 1.7E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 SMART SM01231 323 383 5.8E-10 T 14-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Gene3D G3DSA:1.20.120.160 1 136 1.4E-35 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 SMART SM00073 1 100 5.2E-25 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Gene3D G3DSA:3.30.565.10 384 568 4.6E-54 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Pfam PF01627 Hpt domain 7 98 1.2E-17 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 SUPERFAMILY SSF55874 385 567 2.62E-38 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_13125 30580d2ea4a6806213918197c882c9ec 718 SMART SM00260 561 695 1.7E-23 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Pfam PF01584 CheW-like domain 578 696 1.2E-21 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 431 568 1.3E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_13125 30580d2ea4a6806213918197c882c9ec 718 SUPERFAMILY SSF50341 568 695 8.5E-26 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Gene3D G3DSA:2.30.30.40 569 691 8.9E-28 T 14-10-2018 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 326 358 9.2E-6 T 14-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RY45_13125 30580d2ea4a6806213918197c882c9ec 718 SMART SM00387 428 569 2.3E-25 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_18860 a004a87e64d8861e0fda12213abc7034 336 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 120 288 5.9E-25 T 14-10-2018 RY45_18860 a004a87e64d8861e0fda12213abc7034 336 Gene3D G3DSA:3.40.50.1000 85 324 6.4E-74 T 14-10-2018 IPR023214 HAD superfamily RY45_18860 a004a87e64d8861e0fda12213abc7034 336 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 111 323 2.0E-78 T 14-10-2018 RY45_18860 a004a87e64d8861e0fda12213abc7034 336 SUPERFAMILY SSF56784 120 323 2.58E-46 T 14-10-2018 IPR036412 HAD-like superfamily RY45_18860 a004a87e64d8861e0fda12213abc7034 336 Pfam PF12710 haloacid dehalogenase-like hydrolase 124 288 6.9E-18 T 14-10-2018 RY45_22230 8c1b8492663ce9598b0fca9369ccd48a 44 Pfam PF00468 Ribosomal protein L34 1 44 2.3E-25 T 14-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_22230 8c1b8492663ce9598b0fca9369ccd48a 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 2 26 1.0E-6 T 14-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_22230 8c1b8492663ce9598b0fca9369ccd48a 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 5.7E-27 T 14-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_22230 8c1b8492663ce9598b0fca9369ccd48a 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.669 T 14-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_22230 8c1b8492663ce9598b0fca9369ccd48a 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 14-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_17825 ef2e858436aeb733f5b29a24a335735d 189 Pfam PF04224 Protein of unknown function, DUF417 8 183 1.6E-65 T 14-10-2018 IPR007339 Inner membrane protein RclC-like RY45_17825 ef2e858436aeb733f5b29a24a335735d 189 PIRSF PIRSF028065 10 63 3.1E-11 T 14-10-2018 IPR016865 Inner membrane protein RclC RY45_17825 ef2e858436aeb733f5b29a24a335735d 189 PIRSF PIRSF028065 85 185 8.8E-6 T 14-10-2018 IPR016865 Inner membrane protein RclC RY45_21700 8981e4a3119f9f286d49230f20dc062d 348 Pfam PF08666 SAF domain 288 341 5.2E-9 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RY45_21700 8981e4a3119f9f286d49230f20dc062d 348 SUPERFAMILY SSF51269 283 345 5.89E-16 T 14-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 RY45_21700 8981e4a3119f9f286d49230f20dc062d 348 SUPERFAMILY SSF51569 2 296 1.95E-89 T 14-10-2018 RY45_21700 8981e4a3119f9f286d49230f20dc062d 348 SMART SM00858 287 345 1.4E-10 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RY45_21700 8981e4a3119f9f286d49230f20dc062d 348 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 14 339 7.8E-151 T 14-10-2018 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 RY45_21700 8981e4a3119f9f286d49230f20dc062d 348 Gene3D G3DSA:3.90.1210.10 276 344 2.9E-17 T 14-10-2018 RY45_21700 8981e4a3119f9f286d49230f20dc062d 348 Pfam PF03102 NeuB family 35 272 7.6E-90 T 14-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 RY45_21700 8981e4a3119f9f286d49230f20dc062d 348 Gene3D G3DSA:3.20.20.70 1 272 8.0E-93 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_10000 f4c549d79b11fdfc749ac183273788cb 235 SUPERFAMILY SSF55729 5 231 1.01E-87 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_10000 f4c549d79b11fdfc749ac183273788cb 235 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 206 4.7E-69 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 RY45_10000 f4c549d79b11fdfc749ac183273788cb 235 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 34 219 2.2E-66 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 RY45_10000 f4c549d79b11fdfc749ac183273788cb 235 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 235 95.272 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 RY45_10000 f4c549d79b11fdfc749ac183273788cb 235 Gene3D G3DSA:2.30.210.20 4 63 2.2E-26 T 14-10-2018 RY45_10000 f4c549d79b11fdfc749ac183273788cb 235 Gene3D G3DSA:3.40.630.70 64 235 1.8E-64 T 14-10-2018 RY45_08320 476cdf96fcea8d2bb264f05cda450c38 142 Gene3D G3DSA:3.30.1490.190 85 142 5.6E-23 T 14-10-2018 RY45_08320 476cdf96fcea8d2bb264f05cda450c38 142 SUPERFAMILY SSF46785 5 134 1.84E-43 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08320 476cdf96fcea8d2bb264f05cda450c38 142 Pfam PF01475 Ferric uptake regulator family 10 130 8.6E-47 T 14-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RY45_08320 476cdf96fcea8d2bb264f05cda450c38 142 Gene3D G3DSA:1.10.10.10 1 84 1.4E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Gene3D G3DSA:1.10.287.380 876 948 6.8E-17 T 14-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 SUPERFAMILY SSF47323 642 897 2.8E-68 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Gene3D G3DSA:3.90.740.10 197 357 5.7E-49 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 931 0.0 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 PRINTS PR00986 Valyl-tRNA synthetase signature 469 490 2.7E-34 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 PRINTS PR00986 Valyl-tRNA synthetase signature 500 518 2.7E-34 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 2.7E-34 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 PRINTS PR00986 Valyl-tRNA synthetase signature 369 382 2.7E-34 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 2.7E-34 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 SUPERFAMILY SSF46589 883 947 6.28E-16 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Gene3D G3DSA:3.40.50.620 2 196 1.1E-64 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 948 15.992 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 SUPERFAMILY SSF52374 1 641 1.13E-136 T 14-10-2018 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 883 946 1.1E-15 T 14-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 SUPERFAMILY SSF50677 191 363 3.4E-58 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 631 3.1E-227 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Pfam PF08264 Anticodon-binding domain of tRNA 674 825 4.1E-40 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Gene3D G3DSA:1.10.730.10 575 817 1.2E-69 T 14-10-2018 RY45_19165 d5e0c379fdc6b2c1ff7ef79dbf210f39 950 Gene3D G3DSA:3.40.50.620 358 547 1.0E-42 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_10205 4695851dc217e92eff0d702b59cacfe4 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 195 1.2E-45 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal RY45_10205 4695851dc217e92eff0d702b59cacfe4 232 Gene3D G3DSA:3.40.225.10 3 229 2.6E-59 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RY45_10205 4695851dc217e92eff0d702b59cacfe4 232 SMART SM01007 8 196 1.1E-67 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal RY45_10205 4695851dc217e92eff0d702b59cacfe4 232 SUPERFAMILY SSF53639 4 221 1.96E-67 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RY45_11700 c3d58e25e16e68a4dd4dedc1d9580644 90 SUPERFAMILY SSF54975 6 88 6.76E-26 T 14-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RY45_11700 c3d58e25e16e68a4dd4dedc1d9580644 90 Pfam PF00708 Acylphosphatase 8 88 1.1E-23 T 14-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RY45_11700 c3d58e25e16e68a4dd4dedc1d9580644 90 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RY45_11700 c3d58e25e16e68a4dd4dedc1d9580644 90 Gene3D G3DSA:3.30.70.100 3 89 4.4E-26 T 14-10-2018 RY45_16945 c759e31659e71583ed9900af1fd16d71 1035 SUPERFAMILY SSF53706 72 780 1.81E-99 T 14-10-2018 RY45_16945 c759e31659e71583ed9900af1fd16d71 1035 Pfam PF01568 Molydopterin dinucleotide binding domain 897 999 2.6E-12 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RY45_16945 c759e31659e71583ed9900af1fd16d71 1035 SUPERFAMILY SSF50692 887 1008 1.58E-23 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RY45_16945 c759e31659e71583ed9900af1fd16d71 1035 Pfam PF00384 Molybdopterin oxidoreductase 217 700 5.9E-17 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_16945 c759e31659e71583ed9900af1fd16d71 1035 Gene3D G3DSA:3.40.50.740 71 719 4.7E-62 T 14-10-2018 RY45_16945 c759e31659e71583ed9900af1fd16d71 1035 SMART SM00926 72 156 8.1E-14 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_16945 c759e31659e71583ed9900af1fd16d71 1035 Gene3D G3DSA:2.40.40.20 862 1003 1.0E-20 T 14-10-2018 RY45_02160 234acab2c6e7ecd8999cef54525e15b3 219 SUPERFAMILY SSF53056 3 207 6.15E-79 T 14-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RY45_02160 234acab2c6e7ecd8999cef54525e15b3 219 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 14-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RY45_02160 234acab2c6e7ecd8999cef54525e15b3 219 Gene3D G3DSA:3.40.1050.10 1 209 1.9E-86 T 14-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RY45_02160 234acab2c6e7ecd8999cef54525e15b3 219 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 14-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RY45_02160 234acab2c6e7ecd8999cef54525e15b3 219 SMART SM00947 30 193 3.0E-74 T 14-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RY45_02160 234acab2c6e7ecd8999cef54525e15b3 219 Pfam PF00484 Carbonic anhydrase 37 188 3.9E-55 T 14-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RY45_15985 52e8a6775d353620082e46b909ce2454 575 Pfam PF02927 Cellulase N-terminal ig-like domain 4 80 2.6E-9 T 14-10-2018 IPR004197 Cellulase, Ig-like domain GO:0005975|GO:0008810 RY45_15985 52e8a6775d353620082e46b909ce2454 575 SUPERFAMILY SSF81296 2 100 4.06E-16 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_15985 52e8a6775d353620082e46b909ce2454 575 Gene3D G3DSA:2.60.40.10 1 100 1.1E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_15985 52e8a6775d353620082e46b909ce2454 575 SUPERFAMILY SSF48208 91 569 2.95E-78 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RY45_15985 52e8a6775d353620082e46b909ce2454 575 Gene3D G3DSA:1.50.10.10 102 573 8.1E-202 T 14-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RY45_15985 52e8a6775d353620082e46b909ce2454 575 Pfam PF00759 Glycosyl hydrolase family 9 107 507 2.8E-22 T 14-10-2018 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RY45_16695 6635e24f29c265e031c49b73fdc669a4 214 Gene3D G3DSA:2.40.50.140 1 74 1.6E-18 T 14-10-2018 RY45_16695 6635e24f29c265e031c49b73fdc669a4 214 Pfam PF00313 'Cold-shock' DNA-binding domain 5 70 1.5E-10 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_16695 6635e24f29c265e031c49b73fdc669a4 214 Pfam PF05901 Excalibur calcium-binding domain 172 208 1.8E-8 T 14-10-2018 IPR008613 Excalibur calcium-binding domain RY45_16695 6635e24f29c265e031c49b73fdc669a4 214 SUPERFAMILY SSF50249 1 74 7.1E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_16695 6635e24f29c265e031c49b73fdc669a4 214 SMART SM00357 4 73 2.2E-8 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 Gene3D G3DSA:3.30.2130.30 17 266 4.7E-139 T 14-10-2018 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 SMART SM00981 68 166 9.4E-22 T 14-10-2018 IPR004114 THUMP domain GO:0003723 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 Gene3D G3DSA:3.40.50.150 181 390 4.7E-139 T 14-10-2018 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 SUPERFAMILY SSF53335 412 721 2.91E-70 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 SUPERFAMILY SSF53335 152 392 1.41E-32 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 16 719 33.296 T 14-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 PIRSF PIRSF037618 11 720 0.0 T 14-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 324 330 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 Gene3D G3DSA:3.30.750.80 409 500 1.8E-35 T 14-10-2018 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 449 676 1.6E-28 T 14-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 Gene3D G3DSA:3.40.50.150 501 719 2.8E-76 T 14-10-2018 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 Pfam PF02926 THUMP domain 43 165 6.4E-11 T 14-10-2018 IPR004114 THUMP domain GO:0003723 RY45_11440 75e8aee915a6bd1fa9750682491835f7 723 Pfam PF01170 Putative RNA methylase family UPF0020 174 393 5.8E-50 T 14-10-2018 IPR000241 Putative RNA methylase domain RY45_12690 0a60f2c141c40a60e08e737d550734dd 217 Gene3D G3DSA:3.40.50.150 1 214 5.2E-59 T 14-10-2018 RY45_12690 0a60f2c141c40a60e08e737d550734dd 217 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 213 33.842 T 14-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 RY45_12690 0a60f2c141c40a60e08e737d550734dd 217 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 213 5.8E-58 T 14-10-2018 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 RY45_12690 0a60f2c141c40a60e08e737d550734dd 217 SUPERFAMILY SSF53335 1 213 1.22E-49 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_12690 0a60f2c141c40a60e08e737d550734dd 217 PIRSF PIRSF023956 1 214 6.5E-63 T 14-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 RY45_01615 65065b717dc1830db13d1021aa5eaed1 86 Gene3D G3DSA:3.30.160.140 1 86 1.0E-30 T 14-10-2018 IPR036692 Shew3726-like superfamily RY45_01615 65065b717dc1830db13d1021aa5eaed1 86 SUPERFAMILY SSF160272 1 86 3.4E-28 T 14-10-2018 IPR036692 Shew3726-like superfamily RY45_01615 65065b717dc1830db13d1021aa5eaed1 86 Pfam PF07369 Protein of unknown function (DUF1488) 5 86 5.2E-26 T 14-10-2018 IPR009962 Protein of unknown function DUF1488 RY45_02110 7fdca89d7b429bedae43fe1e48549ac0 417 Gene3D G3DSA:3.30.870.10 13 196 3.3E-32 T 14-10-2018 RY45_02110 7fdca89d7b429bedae43fe1e48549ac0 417 Pfam PF13091 PLD-like domain 262 383 4.9E-15 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RY45_02110 7fdca89d7b429bedae43fe1e48549ac0 417 Pfam PF13091 PLD-like domain 20 172 6.2E-13 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RY45_02110 7fdca89d7b429bedae43fe1e48549ac0 417 SUPERFAMILY SSF56024 233 391 4.93E-19 T 14-10-2018 RY45_02110 7fdca89d7b429bedae43fe1e48549ac0 417 SUPERFAMILY SSF56024 10 189 6.5E-36 T 14-10-2018 RY45_02110 7fdca89d7b429bedae43fe1e48549ac0 417 Gene3D G3DSA:3.30.870.10 245 411 3.9E-22 T 14-10-2018 RY45_02110 7fdca89d7b429bedae43fe1e48549ac0 417 SMART SM00155 113 140 0.0056 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RY45_02110 7fdca89d7b429bedae43fe1e48549ac0 417 SMART SM00155 331 358 0.045 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RY45_13985 a4b292808d5facb074a997f5adfd3ee7 93 TIGRFAM TIGR02511 type_III_tyeA: type III secretion effector delivery regulator, TyeA family 4 84 6.6E-28 T 14-10-2018 IPR013351 Type III secretion system effector delivery regulator TyeA-related RY45_13985 a4b292808d5facb074a997f5adfd3ee7 93 SUPERFAMILY SSF140591 2 90 4.71E-28 T 14-10-2018 RY45_13985 a4b292808d5facb074a997f5adfd3ee7 93 Pfam PF09059 TyeA 6 86 2.1E-29 T 14-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA RY45_13985 a4b292808d5facb074a997f5adfd3ee7 93 Gene3D G3DSA:1.20.1280.80 1 91 1.3E-33 T 14-10-2018 IPR038347 TyeA superfamily RY45_13985 a4b292808d5facb074a997f5adfd3ee7 93 ProDom PD029314 TYEA PLASMID ACR1 SECRETION CONTROL TARGETING TYPE LSSA VP1666 TARGET 1 90 4.0E-45 T 14-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA RY45_04965 1e34ae709ee1e947c3f8f3580c2fd46e 154 Gene3D G3DSA:3.40.30.10 5 154 1.6E-47 T 14-10-2018 RY45_04965 1e34ae709ee1e947c3f8f3580c2fd46e 154 Pfam PF00578 AhpC/TSA family 7 134 6.3E-38 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_04965 1e34ae709ee1e947c3f8f3580c2fd46e 154 PIRSF PIRSF000239 1 142 1.9E-17 T 14-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_04965 1e34ae709ee1e947c3f8f3580c2fd46e 154 SUPERFAMILY SSF52833 4 153 5.95E-48 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_03640 45b982f7dabe2ee6d9762f2a589b20a8 124 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 118 3.9E-41 T 14-10-2018 IPR008249 Uncharacterised protein family UPF0231 RY45_03640 45b982f7dabe2ee6d9762f2a589b20a8 124 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 118 2.0E-20 T 14-10-2018 IPR008249 Uncharacterised protein family UPF0231 RY45_03640 45b982f7dabe2ee6d9762f2a589b20a8 124 PIRSF PIRSF006287 1 121 1.7E-40 T 14-10-2018 IPR008249 Uncharacterised protein family UPF0231 RY45_13975 e54fc4b0969c8440612cd507e5ff5d5a 121 Pfam PF09474 Type III secretion system YscX (type_III_YscX) 1 121 3.3E-40 T 14-10-2018 IPR012672 Type III secretion system YscX RY45_13975 e54fc4b0969c8440612cd507e5ff5d5a 121 TIGRFAM TIGR02502 type_III_YscX: type III secretion protein, YscX family 1 121 4.2E-44 T 14-10-2018 IPR012672 Type III secretion system YscX RY45_01860 1b53e4d77391211c4c814f676c767017 92 PIRSF PIRSF002144 1 92 5.8E-32 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01860 1b53e4d77391211c4c814f676c767017 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.801 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01860 1b53e4d77391211c4c814f676c767017 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 14-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01860 1b53e4d77391211c4c814f676c767017 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.3E-46 T 14-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RY45_01860 1b53e4d77391211c4c814f676c767017 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 8.1E-25 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01860 1b53e4d77391211c4c814f676c767017 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 8.1E-25 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01860 1b53e4d77391211c4c814f676c767017 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 8.1E-25 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01860 1b53e4d77391211c4c814f676c767017 92 Pfam PF00203 Ribosomal protein S19 3 83 5.9E-37 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01860 1b53e4d77391211c4c814f676c767017 92 Gene3D G3DSA:3.30.860.10 1 92 4.9E-44 T 14-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01860 1b53e4d77391211c4c814f676c767017 92 SUPERFAMILY SSF54570 3 84 9.16E-36 T 14-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_02580 7d1ca3ff9146730f22bc55f6516d2527 212 PIRSF PIRSF033239 1 209 5.2E-55 T 14-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD RY45_02580 7d1ca3ff9146730f22bc55f6516d2527 212 Pfam PF06055 Exopolysaccharide synthesis, ExoD 13 194 6.6E-53 T 14-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD RY45_14430 8c11bc0e53c1f89bf27a273ac67cbf7c 109 SUPERFAMILY SSF55159 8 105 4.97E-18 T 14-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 RY45_14430 8c11bc0e53c1f89bf27a273ac67cbf7c 109 PIRSF PIRSF037511 1 109 8.2E-31 T 14-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 RY45_14430 8c11bc0e53c1f89bf27a273ac67cbf7c 109 Pfam PF01253 Translation initiation factor SUI1 35 102 5.4E-12 T 14-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 RY45_14430 8c11bc0e53c1f89bf27a273ac67cbf7c 109 Gene3D G3DSA:3.30.780.10 32 109 6.0E-25 T 14-10-2018 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 106 161 5.0E-22 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 Gene3D G3DSA:3.30.460.80 7 158 3.3E-30 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 212 601 42.753 T 14-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 330 601 4.1E-104 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 216 601 1.9E-169 T 14-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 Gene3D G3DSA:1.10.645.20 215 601 1.2E-145 T 14-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 253 264 - T 14-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 SUPERFAMILY SSF56762 226 601 5.23E-121 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 52 178 1.3E-37 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 50 177 4.6E-38 T 14-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 SUPERFAMILY SSF143243 25 230 4.71E-57 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09695 c9379d0680c675b7d90943d50cf10032 601 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 17 601 69.475 T 14-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 RY45_20110 44018b6425c4d7162e8b73a6e4903f16 361 SUPERFAMILY SSF53756 3 353 5.3E-121 T 14-10-2018 RY45_20110 44018b6425c4d7162e8b73a6e4903f16 361 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 183 344 5.4E-37 T 14-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RY45_20110 44018b6425c4d7162e8b73a6e4903f16 361 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 5 353 37.148 T 14-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20110 44018b6425c4d7162e8b73a6e4903f16 361 Gene3D G3DSA:3.40.50.2000 175 337 2.0E-48 T 14-10-2018 RY45_20110 44018b6425c4d7162e8b73a6e4903f16 361 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 6 142 3.3E-42 T 14-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20110 44018b6425c4d7162e8b73a6e4903f16 361 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 3 347 1.6E-109 T 14-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20110 44018b6425c4d7162e8b73a6e4903f16 361 Gene3D G3DSA:3.40.50.2000 1 174 3.1E-66 T 14-10-2018 RY45_17570 1788a64ed030ca286de768ed10a2fce5 314 Gene3D G3DSA:1.10.3720.10 98 297 2.9E-20 T 14-10-2018 IPR035906 MetI-like superfamily RY45_17570 1788a64ed030ca286de768ed10a2fce5 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 294 2.3E-17 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_17570 1788a64ed030ca286de768ed10a2fce5 314 SUPERFAMILY SSF161098 98 295 4.71E-23 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03365 33af625255bfc5ca9d0f843fe7eb97d4 423 Pfam PF03222 Tryptophan/tyrosine permease family 35 411 4.8E-10 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 SMART SM00387 364 473 1.6E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 Gene3D G3DSA:3.30.565.10 324 473 2.2E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 SUPERFAMILY SSF55874 311 471 1.83E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 Gene3D G3DSA:1.10.287.130 208 321 4.8E-12 T 14-10-2018 RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 SMART SM00388 255 320 1.5E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 320 9.0E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 SUPERFAMILY SSF103190 76 177 3.92E-8 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 368 471 4.4E-14 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 SUPERFAMILY SSF47384 247 321 2.16E-12 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 4.6E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 471 4.6E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 4.6E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_22100 a96da90c91c7a8e17c1470dd39b40a10 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 4.6E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01525 8efb6301f65c8c3d90bb16d0c8b4bbff 279 Pfam PF00294 pfkB family carbohydrate kinase 35 107 4.0E-9 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB RY45_01525 8efb6301f65c8c3d90bb16d0c8b4bbff 279 Pfam PF00294 pfkB family carbohydrate kinase 181 268 1.2E-21 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB RY45_01525 8efb6301f65c8c3d90bb16d0c8b4bbff 279 Gene3D G3DSA:3.40.1190.20 1 276 1.6E-44 T 14-10-2018 IPR029056 Ribokinase-like RY45_01525 8efb6301f65c8c3d90bb16d0c8b4bbff 279 SUPERFAMILY SSF53613 1 272 1.87E-48 T 14-10-2018 IPR029056 Ribokinase-like RY45_01525 8efb6301f65c8c3d90bb16d0c8b4bbff 279 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 223 236 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RY45_10985 86ccfacf300ab618251bbde65370883b 132 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 42 132 9.9E-36 T 14-10-2018 IPR012997 Rare lipoprotein A RY45_10985 86ccfacf300ab618251bbde65370883b 132 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 2 132 20.409 T 14-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 RY45_10985 86ccfacf300ab618251bbde65370883b 132 Pfam PF03330 Lytic transglycolase 40 129 2.0E-25 T 14-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain RY45_10985 86ccfacf300ab618251bbde65370883b 132 SUPERFAMILY SSF50685 38 129 1.85E-18 T 14-10-2018 IPR036908 RlpA-like domain superfamily RY45_10985 86ccfacf300ab618251bbde65370883b 132 Gene3D G3DSA:2.40.40.10 39 132 4.4E-37 T 14-10-2018 IPR036908 RlpA-like domain superfamily RY45_17460 a7440c9d2a9a6dbe05534736da1d69f4 204 Gene3D G3DSA:2.50.20.10 27 192 1.5E-19 T 14-10-2018 RY45_17460 a7440c9d2a9a6dbe05534736da1d69f4 204 SUPERFAMILY SSF89392 28 191 5.49E-14 T 14-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RY45_17460 a7440c9d2a9a6dbe05534736da1d69f4 204 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 39 187 2.6E-10 T 14-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RY45_03385 cf65a21255a5f76527137fe81ea25154 387 Gene3D G3DSA:3.40.640.10 2 246 9.0E-85 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_03385 cf65a21255a5f76527137fe81ea25154 387 SUPERFAMILY SSF53383 11 380 5.78E-113 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_03385 cf65a21255a5f76527137fe81ea25154 387 Gene3D G3DSA:3.90.1150.10 247 385 8.0E-51 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_03385 cf65a21255a5f76527137fe81ea25154 387 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 189 203 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_03385 cf65a21255a5f76527137fe81ea25154 387 PIRSF PIRSF001434 1 383 9.7E-137 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_03385 cf65a21255a5f76527137fe81ea25154 387 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 3 381 1.8E-191 T 14-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 RY45_03385 cf65a21255a5f76527137fe81ea25154 387 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 379 5.7E-137 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 19 852 25.198 T 14-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Pfam PF05190 MutS family domain IV 439 528 1.0E-29 T 14-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 SUPERFAMILY SSF55271 11 127 3.53E-41 T 14-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Gene3D G3DSA:3.30.420.110 139 273 7.1E-37 T 14-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 SUPERFAMILY SSF53150 126 278 7.98E-42 T 14-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Pfam PF05192 MutS domain III 281 570 1.2E-38 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Gene3D G3DSA:1.10.1420.10 278 570 2.2E-101 T 14-10-2018 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 19 858 0.0 T 14-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Pfam PF00488 MutS domain V 621 808 4.3E-87 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Gene3D G3DSA:1.10.1420.10 398 514 2.2E-101 T 14-10-2018 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 PIRSF PIRSF037677 8 194 1.7E-24 T 14-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 PIRSF PIRSF037677 220 836 3.2E-126 T 14-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Gene3D G3DSA:3.40.50.300 581 843 1.5E-100 T 14-10-2018 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Pfam PF05188 MutS domain II 140 265 4.2E-30 T 14-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 SMART SM00534 618 805 2.3E-121 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Pfam PF01624 MutS domain I 20 131 8.9E-40 T 14-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 Gene3D G3DSA:3.40.1170.10 13 133 7.8E-50 T 14-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 SMART SM00533 295 602 2.9E-102 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 SUPERFAMILY SSF48334 279 576 1.57E-86 T 14-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 SUPERFAMILY SSF52540 578 809 4.63E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19245 c748a1ac68bb0b446812c2b84ef5a863 860 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 699 715 - T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RY45_00645 13caad9f7e4b5cc98bddf825519b384f 163 SUPERFAMILY SSF54928 68 154 7.12E-26 T 14-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 RY45_00645 13caad9f7e4b5cc98bddf825519b384f 163 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 1.3E-18 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 RY45_00645 13caad9f7e4b5cc98bddf825519b384f 163 Gene3D G3DSA:3.30.70.330 56 162 1.3E-26 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RY45_00645 13caad9f7e4b5cc98bddf825519b384f 163 SMART SM00360 73 145 2.6E-21 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 RY45_02205 d68ef7fb45f9a0e630c6c75cf47149d1 303 SUPERFAMILY SSF53686 6 298 1.87E-61 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_02205 d68ef7fb45f9a0e630c6c75cf47149d1 303 Gene3D G3DSA:3.40.50.1100 12 294 6.0E-67 T 14-10-2018 RY45_02205 d68ef7fb45f9a0e630c6c75cf47149d1 303 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 289 3.3E-24 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_02205 d68ef7fb45f9a0e630c6c75cf47149d1 303 Gene3D G3DSA:3.40.50.1100 45 146 6.0E-67 T 14-10-2018 RY45_02205 d68ef7fb45f9a0e630c6c75cf47149d1 303 PIRSF PIRSF006278 4 303 4.2E-81 T 14-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase RY45_21830 dbe1b5980e1edc5cb5ff392d92e71ddb 83 SUPERFAMILY SSF55021 6 73 3.0E-10 T 14-10-2018 RY45_21830 dbe1b5980e1edc5cb5ff392d92e71ddb 83 Gene3D G3DSA:3.30.70.260 1 83 5.3E-12 T 14-10-2018 RY45_21830 dbe1b5980e1edc5cb5ff392d92e71ddb 83 Pfam PF13710 ACT domain 14 72 9.8E-23 T 14-10-2018 RY45_21830 dbe1b5980e1edc5cb5ff392d92e71ddb 83 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 5 72 3.0E-4 T 14-10-2018 RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 Gene3D G3DSA:3.40.50.12780 50 514 3.8E-105 T 14-10-2018 RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 SUPERFAMILY SSF56801 8 642 8.37E-185 T 14-10-2018 RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 8.1E-20 T 14-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 ProSitePatterns PS00455 Putative AMP-binding domain signature. 260 271 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 644 53.451 T 14-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 Gene3D G3DSA:3.30.300.30 517 648 3.3E-31 T 14-10-2018 RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 Pfam PF13193 AMP-binding enzyme C-terminal domain 530 608 2.5E-26 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 Pfam PF00501 AMP-binding enzyme 83 521 3.8E-93 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_17245 339e93c85c9bb25d5387f53c2b1b2ca4 648 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 22 642 0.0 T 14-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 RY45_18770 43b0b2911d26e3d4b04bc2db903b8189 344 SUPERFAMILY SSF52540 5 333 3.55E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18770 43b0b2911d26e3d4b04bc2db903b8189 344 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_18770 43b0b2911d26e3d4b04bc2db903b8189 344 Gene3D G3DSA:3.40.50.300 101 344 2.1E-105 T 14-10-2018 RY45_18770 43b0b2911d26e3d4b04bc2db903b8189 344 Pfam PF00437 Type II/IV secretion system protein 12 265 3.5E-47 T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_18770 43b0b2911d26e3d4b04bc2db903b8189 344 Gene3D G3DSA:3.30.450.90 1 100 3.9E-37 T 14-10-2018 RY45_18770 43b0b2911d26e3d4b04bc2db903b8189 344 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 9.1E-154 T 14-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 RY45_18770 43b0b2911d26e3d4b04bc2db903b8189 344 SMART SM00382 122 247 7.1E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 539 25.424 T 14-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 164 184 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 73 94 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 503 526 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 419 442 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 2 23 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 221 239 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 254 269 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 466 488 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR00701 60kDa inner membrane protein signature 328 348 4.1E-98 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 Pfam PF02096 60Kd inner membrane protein 358 537 2.7E-62 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 Gene3D G3DSA:2.70.98.90 63 337 1.4E-102 T 14-10-2018 IPR038221 YidC, periplasmic domain superfamily RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 355 6.7E-122 T 14-10-2018 IPR028053 Membrane insertase YidC, N-terminal RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 357 537 7.3E-72 T 14-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR01900 YidC translocation/secretion protein signature 492 516 2.4E-25 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR01900 YidC translocation/secretion protein signature 472 487 2.4E-25 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 PRINTS PR01900 YidC translocation/secretion protein signature 343 359 2.4E-25 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RY45_22220 17c8f01fe10a1b924ada5dd0db74cef4 548 Pfam PF14849 YidC periplasmic domain 68 347 4.2E-92 T 14-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 14-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 SUPERFAMILY SSF110324 2 82 6.98E-33 T 14-10-2018 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 1.4E-40 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-15 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.491 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 7.5E-36 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 7.5E-36 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 7.5E-36 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 Pfam PF01016 Ribosomal L27 protein 2 82 1.5E-37 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_05150 0e0a8c6aa87db3136e1dba0493d240f3 85 Gene3D G3DSA:2.40.50.100 21 85 9.9E-28 T 14-10-2018 RY45_20760 492a2b37061172dd3a72ad85ee12c49e 132 SUPERFAMILY SSF54593 1 131 1.15E-26 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_20760 492a2b37061172dd3a72ad85ee12c49e 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 130 1.2E-12 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_20760 492a2b37061172dd3a72ad85ee12c49e 132 Gene3D G3DSA:3.10.180.10 1 132 4.9E-32 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_22330 3891ae7f76683b38e0a942006326face 209 SUPERFAMILY SSF52540 2 208 2.15E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22330 3891ae7f76683b38e0a942006326face 209 Gene3D G3DSA:3.40.50.300 1 209 5.3E-50 T 14-10-2018 RY45_22330 3891ae7f76683b38e0a942006326face 209 PIRSF PIRSF009320 1 209 4.9E-44 T 14-10-2018 RY45_22330 3891ae7f76683b38e0a942006326face 209 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 182 2.4E-16 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 SUPERFAMILY SSF58104 390 699 3.66E-74 T 14-10-2018 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 Gene3D G3DSA:1.10.287.950 367 700 1.5E-73 T 14-10-2018 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 481 664 1.9E-44 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 Gene3D G3DSA:3.30.450.20 77 230 5.0E-36 T 14-10-2018 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 SMART SM00283 437 698 4.4E-67 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 SMART SM00304 368 422 7.6E-13 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 465 494 5.2E-5 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 564 593 5.2E-5 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 Pfam PF00672 HAMP domain 368 418 8.7E-11 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_17755 616b562eb1da61cb8a09ab9c03588ac9 700 Gene3D G3DSA:3.30.450.20 72 327 5.0E-36 T 14-10-2018 RY45_08980 2d1b46ef9b434b5f6dee034c87e40a8b 523 PIRSF PIRSF006446 3 520 1.4E-142 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RY45_08980 2d1b46ef9b434b5f6dee034c87e40a8b 523 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 504 1.3E-170 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RY45_15920 6c93908d9fb5932bfccd19ca202f5ca2 251 Pfam PF09836 Putative DNA-binding domain 7 97 2.4E-18 T 14-10-2018 IPR018640 Putative DNA-binding domain, bacteria RY45_06310 97ee0b991dae0291207d947b49556c02 185 Pfam PF01765 Ribosome recycling factor 20 183 7.0E-64 T 14-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 RY45_06310 97ee0b991dae0291207d947b49556c02 185 Gene3D G3DSA:1.10.132.20 1 35 4.2E-6 T 14-10-2018 RY45_06310 97ee0b991dae0291207d947b49556c02 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 2.3E-75 T 14-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 RY45_06310 97ee0b991dae0291207d947b49556c02 185 Gene3D G3DSA:1.10.132.20 102 185 5.4E-26 T 14-10-2018 RY45_06310 97ee0b991dae0291207d947b49556c02 185 SUPERFAMILY SSF55194 2 184 7.59E-71 T 14-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 RY45_06310 97ee0b991dae0291207d947b49556c02 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.755 T 14-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 RY45_06310 97ee0b991dae0291207d947b49556c02 185 Gene3D G3DSA:3.30.1360.40 36 101 3.3E-31 T 14-10-2018 RY45_13580 4496cbb32c426fdb4f8c60b59393a006 411 Pfam PF13487 HD domain 215 278 6.2E-18 T 14-10-2018 RY45_13580 4496cbb32c426fdb4f8c60b59393a006 411 Pfam PF11871 Domain of unknown function (DUF3391) 5 125 9.1E-16 T 14-10-2018 IPR021812 Protein of unknown function DUF3391 RY45_13580 4496cbb32c426fdb4f8c60b59393a006 411 Gene3D G3DSA:1.10.3210.10 30 328 2.3E-50 T 14-10-2018 RY45_13580 4496cbb32c426fdb4f8c60b59393a006 411 TIGRFAM TIGR00277 HDIG: HDIG domain 164 255 9.5E-9 T 14-10-2018 IPR006675 HDIG domain RY45_13580 4496cbb32c426fdb4f8c60b59393a006 411 SMART SM00471 160 296 2.7E-8 T 14-10-2018 IPR003607 HD/PDEase domain RY45_13580 4496cbb32c426fdb4f8c60b59393a006 411 SUPERFAMILY SSF109604 157 326 4.82E-33 T 14-10-2018 RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 Gene3D G3DSA:1.10.10.10 1 86 3.4E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 Gene3D G3DSA:3.40.190.10 109 274 7.6E-12 T 14-10-2018 RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.7E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.7E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.7E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.4E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 Gene3D G3DSA:3.40.190.10 160 252 7.6E-12 T 14-10-2018 RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 SUPERFAMILY SSF53850 88 274 4.03E-24 T 14-10-2018 RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 Pfam PF03466 LysR substrate binding domain 87 274 3.7E-22 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_09070 bc0ba90ae2385ad9ee03ad3097c89b63 291 SUPERFAMILY SSF46785 1 81 1.82E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 Gene3D G3DSA:3.40.190.10 100 286 3.8E-36 T 14-10-2018 RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.6E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 Gene3D G3DSA:3.40.190.10 159 259 3.8E-36 T 14-10-2018 RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 SUPERFAMILY SSF53850 92 292 3.08E-26 T 14-10-2018 RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 Gene3D G3DSA:1.10.10.10 5 94 5.2E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 Pfam PF03466 LysR substrate binding domain 87 290 4.4E-24 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_19315 0880c79d0f44a3f9674dadc3d48bb0ad 305 SUPERFAMILY SSF46785 2 84 4.22E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_01690 e2bd3fa2ad87c5fc5fa8c35dcc7ad686 145 Gene3D G3DSA:3.50.80.10 1 145 2.6E-54 T 14-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily RY45_01690 e2bd3fa2ad87c5fc5fa8c35dcc7ad686 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 145 8.1E-64 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RY45_01690 e2bd3fa2ad87c5fc5fa8c35dcc7ad686 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 3.5E-52 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RY45_01690 e2bd3fa2ad87c5fc5fa8c35dcc7ad686 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.324 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RY45_01690 e2bd3fa2ad87c5fc5fa8c35dcc7ad686 145 SUPERFAMILY SSF69500 2 144 1.83E-54 T 14-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily RY45_20145 3e6bef6440e0072fdd20c1e78a721e6b 104 Pfam PF04999 Cell division protein FtsL 8 102 1.3E-29 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 RY45_20145 3e6bef6440e0072fdd20c1e78a721e6b 104 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 20 93 1.1E-18 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 RY45_20145 3e6bef6440e0072fdd20c1e78a721e6b 104 Hamap MF_00910 Cell division protein FtsL [ftsL]. 18 101 14.782 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 RY45_03855 26c73c0ec19bd1163976174771b549a1 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.6E-30 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_03855 26c73c0ec19bd1163976174771b549a1 87 SUPERFAMILY SSF46992 3 86 3.53E-32 T 14-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_03855 26c73c0ec19bd1163976174771b549a1 87 Pfam PF01649 Ribosomal protein S20 2 84 3.9E-28 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_03855 26c73c0ec19bd1163976174771b549a1 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.874 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_03855 26c73c0ec19bd1163976174771b549a1 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 87 4.0E-21 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_03855 26c73c0ec19bd1163976174771b549a1 87 Gene3D G3DSA:1.20.58.110 1 87 2.2E-30 T 14-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_21800 995073372bcde7a3e8d416210640f8ce 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 7.6E-8 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_21800 995073372bcde7a3e8d416210640f8ce 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 7.6E-8 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_21800 995073372bcde7a3e8d416210640f8ce 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 54 1.1E-16 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_21800 995073372bcde7a3e8d416210640f8ce 184 SUPERFAMILY SSF48498 76 175 1.98E-16 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_21800 995073372bcde7a3e8d416210640f8ce 184 SUPERFAMILY SSF46689 3 76 1.03E-18 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_21800 995073372bcde7a3e8d416210640f8ce 184 Gene3D G3DSA:1.10.357.10 1 178 2.5E-53 T 14-10-2018 RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 Gene3D G3DSA:1.20.272.10 241 345 9.3E-44 T 14-10-2018 RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 Gene3D G3DSA:3.40.50.300 8 165 2.1E-45 T 14-10-2018 RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 SUPERFAMILY SSF48019 252 434 2.83E-74 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 Gene3D G3DSA:1.10.3710.10 346 447 7.1E-37 T 14-10-2018 RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 SUPERFAMILY SSF52540 12 229 3.67E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 SMART SM00382 50 166 5.9E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 Pfam PF12002 MgsA AAA+ ATPase C terminal 268 434 1.1E-67 T 14-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 Pfam PF16193 AAA C-terminal domain 190 267 5.3E-20 T 14-10-2018 IPR032423 AAA C-terminal domain RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 160 6.6E-16 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_10035 7d25230925ea89980648cf5f0bf441f1 447 Gene3D G3DSA:1.10.8.60 166 240 4.1E-16 T 14-10-2018 RY45_04385 7941af9a7858690b03093029a4745fe1 259 Pfam PF00293 NUDIX domain 132 250 3.2E-15 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_04385 7941af9a7858690b03093029a4745fe1 259 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 97 127 2.3E-8 T 14-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 RY45_04385 7941af9a7858690b03093029a4745fe1 259 SUPERFAMILY SSF55811 4 100 2.23E-18 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_04385 7941af9a7858690b03093029a4745fe1 259 SUPERFAMILY SSF55811 83 253 1.18E-35 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_04385 7941af9a7858690b03093029a4745fe1 259 ProSitePatterns PS00893 Nudix box signature. 165 186 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_04385 7941af9a7858690b03093029a4745fe1 259 Gene3D G3DSA:3.90.79.10 129 256 3.2E-37 T 14-10-2018 RY45_04385 7941af9a7858690b03093029a4745fe1 259 Gene3D G3DSA:3.90.79.20 1 128 2.8E-29 T 14-10-2018 RY45_12210 c4af310fcdb80f22a31fce1407d7f0b0 156 SUPERFAMILY SSF46785 9 146 9.27E-24 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_12210 c4af310fcdb80f22a31fce1407d7f0b0 156 Pfam PF12802 MarR family 36 93 4.3E-10 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_12210 c4af310fcdb80f22a31fce1407d7f0b0 156 Gene3D G3DSA:1.10.10.10 4 146 1.9E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_12210 c4af310fcdb80f22a31fce1407d7f0b0 156 SMART SM00347 30 129 8.0E-9 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_00455 d30f907ec0435ede4aacd9fafea9201f 76 SUPERFAMILY SSF57716 35 69 1.25E-5 T 14-10-2018 RY45_00455 d30f907ec0435ede4aacd9fafea9201f 76 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 34 65 1.0E-8 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RY45_00455 d30f907ec0435ede4aacd9fafea9201f 76 Gene3D G3DSA:1.20.120.910 2 69 1.4E-13 T 14-10-2018 RY45_02510 7c5295e835177e7a4b8aa12b941e9d19 663 Gene3D G3DSA:3.20.20.540 223 536 2.5E-154 T 14-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RY45_02510 7c5295e835177e7a4b8aa12b941e9d19 663 Pfam PF01964 Radical SAM ThiC family 153 600 9.9E-200 T 14-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RY45_02510 7c5295e835177e7a4b8aa12b941e9d19 663 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 152 605 99.988 T 14-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RY45_02510 7c5295e835177e7a4b8aa12b941e9d19 663 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 152 604 6.5E-222 T 14-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RY45_02510 7c5295e835177e7a4b8aa12b941e9d19 663 Pfam PF13667 ThiC-associated domain 32 112 3.3E-30 T 14-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RY45_02620 6e9fb72d9cfd2d9737f9a399918f9dfe 206 Pfam PF03929 PepSY-associated TM region 11 179 5.1E-11 T 14-10-2018 IPR005625 PepSY-associated TM protein RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 Gene3D G3DSA:3.40.190.10 88 277 2.2E-34 T 14-10-2018 RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 SUPERFAMILY SSF46785 1 83 4.67E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.5E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 SUPERFAMILY SSF53850 89 287 7.24E-29 T 14-10-2018 RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 Gene3D G3DSA:1.10.10.10 1 84 6.2E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 Pfam PF03466 LysR substrate binding domain 88 282 6.2E-29 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_12375 9f19b94034a63dca2a1c838937c1f4ad 300 Gene3D G3DSA:3.40.190.10 160 260 2.2E-34 T 14-10-2018 RY45_06445 778fc1fcec002f4b26c144b4e2941338 179 Pfam PF13302 Acetyltransferase (GNAT) domain 9 147 6.4E-27 T 14-10-2018 IPR000182 GNAT domain RY45_06445 778fc1fcec002f4b26c144b4e2941338 179 Gene3D G3DSA:3.40.630.30 3 178 3.9E-38 T 14-10-2018 RY45_06445 778fc1fcec002f4b26c144b4e2941338 179 SUPERFAMILY SSF55729 5 172 7.15E-39 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_21925 a1d06e0d7a9783fc82ee10f67300e518 217 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 217 36.171 T 14-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_21925 a1d06e0d7a9783fc82ee10f67300e518 217 SUPERFAMILY SSF53271 2 194 2.07E-47 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like RY45_21925 a1d06e0d7a9783fc82ee10f67300e518 217 Gene3D G3DSA:3.40.50.2020 1 217 9.3E-78 T 14-10-2018 RY45_21925 a1d06e0d7a9783fc82ee10f67300e518 217 Pfam PF00156 Phosphoribosyl transferase domain 44 161 1.4E-12 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RY45_21925 a1d06e0d7a9783fc82ee10f67300e518 217 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 5.7E-67 T 14-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_04370 7c12e8a60110e4e2dc0b987314e26f0b 250 Gene3D G3DSA:1.20.5.110 175 214 9.3E-9 T 14-10-2018 RY45_04370 7c12e8a60110e4e2dc0b987314e26f0b 250 SUPERFAMILY SSF81324 10 210 6.54E-36 T 14-10-2018 RY45_04370 7c12e8a60110e4e2dc0b987314e26f0b 250 Pfam PF07885 Ion channel 132 209 9.4E-17 T 14-10-2018 IPR013099 Potassium channel domain RY45_04370 7c12e8a60110e4e2dc0b987314e26f0b 250 Gene3D G3DSA:1.20.120.350 5 120 7.8E-14 T 14-10-2018 IPR027359 Voltage-dependent channel domain superfamily RY45_04370 7c12e8a60110e4e2dc0b987314e26f0b 250 Gene3D G3DSA:1.10.287.70 121 173 1.3E-13 T 14-10-2018 RY45_04370 7c12e8a60110e4e2dc0b987314e26f0b 250 PRINTS PR00169 Potassium channel signature 95 121 4.6E-7 T 14-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RY45_04370 7c12e8a60110e4e2dc0b987314e26f0b 250 PRINTS PR00169 Potassium channel signature 154 176 4.6E-7 T 14-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RY45_04370 7c12e8a60110e4e2dc0b987314e26f0b 250 PRINTS PR00169 Potassium channel signature 183 209 4.6E-7 T 14-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RY45_08330 19f6d3c3621cf9e67123aa46b1c404e0 174 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 1.7E-69 T 14-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 RY45_08330 19f6d3c3621cf9e67123aa46b1c404e0 174 Gene3D G3DSA:3.40.50.360 3 174 2.8E-54 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_08330 19f6d3c3621cf9e67123aa46b1c404e0 174 PIRSF PIRSF038996 1 172 5.1E-66 T 14-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 RY45_08330 19f6d3c3621cf9e67123aa46b1c404e0 174 SUPERFAMILY SSF52218 4 170 1.15E-52 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_08330 19f6d3c3621cf9e67123aa46b1c404e0 174 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 14-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RY45_08330 19f6d3c3621cf9e67123aa46b1c404e0 174 Pfam PF00258 Flavodoxin 6 160 3.6E-29 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RY45_12310 d2ecde7437a01f46c7d3107d6246360e 286 Pfam PF01163 RIO1 family 30 221 1.4E-41 T 14-10-2018 RY45_12310 d2ecde7437a01f46c7d3107d6246360e 286 SMART SM00090 7 228 5.2E-11 T 14-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 RY45_12310 d2ecde7437a01f46c7d3107d6246360e 286 SUPERFAMILY SSF56112 19 224 2.74E-20 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily RY45_12310 d2ecde7437a01f46c7d3107d6246360e 286 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 14-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 RY45_12310 d2ecde7437a01f46c7d3107d6246360e 286 Gene3D G3DSA:1.10.510.10 136 222 3.3E-19 T 14-10-2018 RY45_11030 b6349d7e6e7e684cfe3c7bb39ee43e2c 295 SUPERFAMILY SSF54506 10 294 2.04E-48 T 14-10-2018 RY45_11030 b6349d7e6e7e684cfe3c7bb39ee43e2c 295 Gene3D G3DSA:3.10.310.10 13 292 2.0E-54 T 14-10-2018 RY45_11030 b6349d7e6e7e684cfe3c7bb39ee43e2c 295 Gene3D G3DSA:3.10.310.10 136 291 2.0E-54 T 14-10-2018 RY45_11030 b6349d7e6e7e684cfe3c7bb39ee43e2c 295 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 8 292 4.5E-34 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RY45_11030 b6349d7e6e7e684cfe3c7bb39ee43e2c 295 PIRSF PIRSF016184 6 295 5.4E-44 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RY45_11030 b6349d7e6e7e684cfe3c7bb39ee43e2c 295 Pfam PF02567 Phenazine biosynthesis-like protein 14 292 1.4E-47 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RY45_13295 9a877a62dee079142f3a3ed43a2ceab7 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.9E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_13295 9a877a62dee079142f3a3ed43a2ceab7 301 Gene3D G3DSA:3.40.190.290 91 293 9.9E-62 T 14-10-2018 RY45_13295 9a877a62dee079142f3a3ed43a2ceab7 301 Pfam PF03466 LysR substrate binding domain 89 292 1.5E-41 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_13295 9a877a62dee079142f3a3ed43a2ceab7 301 SUPERFAMILY SSF53850 90 293 2.71E-43 T 14-10-2018 RY45_13295 9a877a62dee079142f3a3ed43a2ceab7 301 SUPERFAMILY SSF46785 4 88 2.63E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_13295 9a877a62dee079142f3a3ed43a2ceab7 301 Gene3D G3DSA:1.10.10.10 3 86 4.3E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06995 c0b3e9278387adb574a6f7ac5c13f8b6 282 Gene3D G3DSA:1.25.40.10 198 282 3.2E-21 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_06995 c0b3e9278387adb574a6f7ac5c13f8b6 282 Pfam PF00085 Thioredoxin 4 105 5.3E-11 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 RY45_06995 c0b3e9278387adb574a6f7ac5c13f8b6 282 SUPERFAMILY SSF52833 2 110 1.19E-16 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_06995 c0b3e9278387adb574a6f7ac5c13f8b6 282 SUPERFAMILY SSF48452 112 247 2.85E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_06995 c0b3e9278387adb574a6f7ac5c13f8b6 282 Pfam PF14561 Tetratricopeptide repeat 196 282 2.5E-24 T 14-10-2018 RY45_06995 c0b3e9278387adb574a6f7ac5c13f8b6 282 Gene3D G3DSA:3.40.30.10 1 110 3.9E-15 T 14-10-2018 RY45_06995 c0b3e9278387adb574a6f7ac5c13f8b6 282 Gene3D G3DSA:1.25.40.10 111 197 6.2E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_06995 c0b3e9278387adb574a6f7ac5c13f8b6 282 Pfam PF14559 Tetratricopeptide repeat 125 189 1.2E-9 T 14-10-2018 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 Gene3D G3DSA:3.10.20.30 382 456 6.5E-28 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 SMART SM00471 41 153 1.2E-9 T 14-10-2018 IPR003607 HD/PDEase domain RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 Gene3D G3DSA:3.30.70.260 626 705 2.4E-13 T 14-10-2018 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 Gene3D G3DSA:1.10.3210.10 2 190 6.2E-79 T 14-10-2018 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 Pfam PF13291 ACT domain 625 702 4.4E-14 T 14-10-2018 IPR002912 ACT domain RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 SUPERFAMILY SSF109604 3 190 1.07E-73 T 14-10-2018 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 SMART SM00954 235 345 1.3E-59 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 5.3E-35 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 701 7.1E-260 T 14-10-2018 IPR004811 RelA/SpoT family GO:0015969 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 Pfam PF13328 HD domain 26 175 7.4E-52 T 14-10-2018 IPR003607 HD/PDEase domain RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 SUPERFAMILY SSF81301 181 393 7.19E-59 T 14-10-2018 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 Pfam PF02824 TGS domain 389 448 1.3E-17 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 SUPERFAMILY SSF55021 628 702 8.4E-8 T 14-10-2018 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 Gene3D G3DSA:3.30.460.10 194 325 1.5E-45 T 14-10-2018 RY45_00190 5eded9d77f2b88aa3e9c8871a9fcffd0 705 SUPERFAMILY SSF81271 376 448 1.98E-19 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RY45_13745 84f40359b9de46143b7fa3253628f68e 511 SUPERFAMILY SSF56176 425 509 7.36E-18 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_13745 84f40359b9de46143b7fa3253628f68e 511 Pfam PF03471 Transporter associated domain 431 508 8.3E-18 T 14-10-2018 IPR005170 Transporter-associated domain RY45_13745 84f40359b9de46143b7fa3253628f68e 511 Pfam PF03741 Integral membrane protein TerC family 14 203 5.5E-47 T 14-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RY45_13745 84f40359b9de46143b7fa3253628f68e 511 SMART SM00116 307 356 9.6 T 14-10-2018 IPR000644 CBS domain RY45_13745 84f40359b9de46143b7fa3253628f68e 511 SMART SM00116 369 417 1.4 T 14-10-2018 IPR000644 CBS domain RY45_13745 84f40359b9de46143b7fa3253628f68e 511 Gene3D G3DSA:3.10.580.10 279 431 1.3E-46 T 14-10-2018 RY45_13745 84f40359b9de46143b7fa3253628f68e 511 SUPERFAMILY SSF54631 286 420 6.7E-26 T 14-10-2018 RY45_13745 84f40359b9de46143b7fa3253628f68e 511 SMART SM01091 429 510 5.2E-22 T 14-10-2018 IPR005170 Transporter-associated domain RY45_13745 84f40359b9de46143b7fa3253628f68e 511 Gene3D G3DSA:3.30.465.10 432 510 4.5E-17 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_13745 84f40359b9de46143b7fa3253628f68e 511 Pfam PF00571 CBS domain 369 417 0.0026 T 14-10-2018 IPR000644 CBS domain RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 SUPERFAMILY SSF54913 225 297 9.67E-22 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 5 298 35.407 T 14-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 Pfam PF08029 HisG, C-terminal domain 222 295 1.2E-24 T 14-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 Gene3D G3DSA:3.40.190.10 6 219 1.3E-71 T 14-10-2018 RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 Pfam PF01634 ATP phosphoribosyltransferase 53 218 5.5E-49 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 Gene3D G3DSA:3.40.190.10 102 191 1.3E-71 T 14-10-2018 RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 SUPERFAMILY SSF53850 5 222 1.22E-68 T 14-10-2018 RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 201 297 9.9E-30 T 14-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 6 195 1.9E-57 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 Gene3D G3DSA:3.30.70.120 225 298 2.1E-34 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_11855 a4b9df02293c28899faa3477ac7c6cf4 298 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 155 176 - T 14-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 RY45_15470 cf8991a8ecdec0d40e898fe165037132 203 Gene3D G3DSA:1.10.260.40 17 93 1.5E-14 T 14-10-2018 RY45_15470 cf8991a8ecdec0d40e898fe165037132 203 Pfam PF07883 Cupin domain 129 196 1.5E-16 T 14-10-2018 IPR013096 Cupin 2, conserved barrel RY45_15470 cf8991a8ecdec0d40e898fe165037132 203 Gene3D G3DSA:2.60.120.10 94 202 2.1E-17 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_15470 cf8991a8ecdec0d40e898fe165037132 203 SUPERFAMILY SSF47413 27 92 7.78E-14 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_15470 cf8991a8ecdec0d40e898fe165037132 203 Pfam PF13560 Helix-turn-helix domain 27 81 5.0E-10 T 14-10-2018 RY45_15470 cf8991a8ecdec0d40e898fe165037132 203 SMART SM00530 30 85 6.5E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_15470 cf8991a8ecdec0d40e898fe165037132 203 SUPERFAMILY SSF51182 70 203 2.17E-28 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_07115 5f9ce8c7feeb08361d52e62359571347 271 SUPERFAMILY SSF53098 97 260 6.83E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_07115 5f9ce8c7feeb08361d52e62359571347 271 Gene3D G3DSA:3.30.420.10 102 264 9.1E-14 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_07115 5f9ce8c7feeb08361d52e62359571347 271 Pfam PF00665 Integrase core domain 104 218 2.4E-31 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RY45_07115 5f9ce8c7feeb08361d52e62359571347 271 Pfam PF13276 HTH-like domain 24 80 9.4E-15 T 14-10-2018 IPR025948 HTH-like domain RY45_04400 3d78efdc98375da23566af7ff3f45855 336 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2 104 2.0E-33 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 SUPERFAMILY SSF51735 2 176 5.23E-55 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_04400 3d78efdc98375da23566af7ff3f45855 336 SUPERFAMILY SSF55347 154 316 4.76E-59 T 14-10-2018 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 315 1.9E-55 T 14-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 SMART SM00846 2 154 1.6E-82 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 PIRSF PIRSF000149 1 336 3.5E-134 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 Gene3D G3DSA:3.30.360.10 153 317 1.1E-129 T 14-10-2018 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 3.7E-30 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 3.7E-30 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 3.7E-30 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 3.7E-30 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 3.7E-30 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 3 327 6.8E-167 T 14-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 1 336 66.581 T 14-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 RY45_04400 3d78efdc98375da23566af7ff3f45855 336 Gene3D G3DSA:3.40.50.720 3 327 1.1E-129 T 14-10-2018 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 Gene3D G3DSA:3.30.1330.60 200 342 1.1E-48 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 Pfam PF00691 OmpA family 223 314 1.6E-19 T 14-10-2018 IPR006665 OmpA-like domain RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 Pfam PF01389 OmpA-like transmembrane domain 24 190 3.7E-37 T 14-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 PRINTS PR01022 Outer membrane protein A signature 241 260 2.1E-24 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 PRINTS PR01022 Outer membrane protein A signature 314 327 2.1E-24 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 PRINTS PR01022 Outer membrane protein A signature 212 227 2.1E-24 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 PRINTS PR01022 Outer membrane protein A signature 280 299 2.1E-24 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 PRINTS PR01022 Outer membrane protein A signature 100 116 2.1E-24 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 SUPERFAMILY SSF103088 211 335 3.4E-30 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 Gene3D G3DSA:2.40.160.20 21 183 6.7E-25 T 14-10-2018 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 PRINTS PR01021 OMPA domain signature 224 246 9.3E-19 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 PRINTS PR01021 OMPA domain signature 256 271 9.3E-19 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 PRINTS PR01021 OMPA domain signature 271 287 9.3E-19 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_06850 447d2d56f687c9aaf520942480d0ea00 351 SUPERFAMILY SSF56925 21 162 3.66E-22 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RY45_11590 d65cb8fb9c621d0666bebf7137dc8905 284 Gene3D G3DSA:3.20.10.10 125 283 3.8E-48 T 14-10-2018 RY45_11590 d65cb8fb9c621d0666bebf7137dc8905 284 Gene3D G3DSA:3.30.470.10 16 123 4.0E-29 T 14-10-2018 RY45_11590 d65cb8fb9c621d0666bebf7137dc8905 284 SUPERFAMILY SSF56752 18 270 1.96E-65 T 14-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RY45_11590 d65cb8fb9c621d0666bebf7137dc8905 284 Pfam PF01063 Amino-transferase class IV 39 262 6.2E-48 T 14-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RY45_11590 d65cb8fb9c621d0666bebf7137dc8905 284 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 18 278 1.7E-106 T 14-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 RY45_19420 d912182775e905977e965e83849f6a00 302 Pfam PF03466 LysR substrate binding domain 92 297 1.6E-32 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_19420 d912182775e905977e965e83849f6a00 302 Gene3D G3DSA:3.40.190.290 94 298 1.0E-45 T 14-10-2018 RY45_19420 d912182775e905977e965e83849f6a00 302 SUPERFAMILY SSF46785 6 88 1.09E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_19420 d912182775e905977e965e83849f6a00 302 Gene3D G3DSA:1.10.10.10 5 91 2.4E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19420 d912182775e905977e965e83849f6a00 302 SUPERFAMILY SSF53850 92 298 7.42E-34 T 14-10-2018 RY45_19420 d912182775e905977e965e83849f6a00 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 66 3.1E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 SMART SM00382 281 476 8.0E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 SMART SM00382 32 235 1.1E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 SUPERFAMILY SSF52540 274 486 1.25E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 Gene3D G3DSA:3.40.50.300 1 239 3.7E-57 T 14-10-2018 RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 Pfam PF00005 ABC transporter 275 427 1.5E-19 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 Pfam PF00005 ABC transporter 23 172 7.1E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 Gene3D G3DSA:3.40.50.300 269 496 5.0E-40 T 14-10-2018 RY45_10220 d92ee283793022d0398b7e9cd2aec395 499 SUPERFAMILY SSF52540 6 223 1.67E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16135 3f0e3b871143d30f0eff6557d94d517d 541 SUPERFAMILY SSF58104 232 540 7.72E-79 T 14-10-2018 RY45_16135 3f0e3b871143d30f0eff6557d94d517d 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 180 9.4E-11 T 14-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RY45_16135 3f0e3b871143d30f0eff6557d94d517d 541 Gene3D G3DSA:1.10.287.950 211 541 6.7E-74 T 14-10-2018 RY45_16135 3f0e3b871143d30f0eff6557d94d517d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 13 38 1.7E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_16135 3f0e3b871143d30f0eff6557d94d517d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 1.7E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_16135 3f0e3b871143d30f0eff6557d94d517d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 1.7E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_16135 3f0e3b871143d30f0eff6557d94d517d 541 SMART SM00283 279 540 1.7E-79 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_16135 3f0e3b871143d30f0eff6557d94d517d 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 507 4.1E-44 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_01625 b1f9f9ad62ad4db0c24b2929acff4138 205 SUPERFAMILY SSF46626 114 203 7.39E-21 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_01625 b1f9f9ad62ad4db0c24b2929acff4138 205 PIRSF PIRSF000005 1 205 6.1E-64 T 14-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 RY45_01625 b1f9f9ad62ad4db0c24b2929acff4138 205 Pfam PF00034 Cytochrome c 117 203 1.9E-10 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_01625 b1f9f9ad62ad4db0c24b2929acff4138 205 Pfam PF00034 Cytochrome c 25 105 2.7E-10 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_01625 b1f9f9ad62ad4db0c24b2929acff4138 205 Gene3D G3DSA:1.10.760.10 21 107 7.9E-24 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_01625 b1f9f9ad62ad4db0c24b2929acff4138 205 SUPERFAMILY SSF46626 19 104 2.48E-20 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_01625 b1f9f9ad62ad4db0c24b2929acff4138 205 Gene3D G3DSA:1.10.760.10 111 205 5.0E-27 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 SUPERFAMILY SSF52402 176 372 1.4E-40 T 14-10-2018 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 SUPERFAMILY SSF52821 393 481 3.7E-13 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 376 6.5E-114 T 14-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 Pfam PF02926 THUMP domain 28 161 4.5E-23 T 14-10-2018 IPR004114 THUMP domain GO:0003723 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 176 369 9.3E-71 T 14-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 Gene3D G3DSA:3.40.50.620 175 383 5.7E-49 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 218.96 T 14-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 383 482 3.1E-39 T 14-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 Gene3D G3DSA:3.30.2130.30 1 174 5.8E-34 T 14-10-2018 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 Gene3D G3DSA:3.40.250.10 384 482 2.6E-11 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 SMART SM00981 75 165 1.4E-25 T 14-10-2018 IPR004114 THUMP domain GO:0003723 RY45_09265 b215c10cb4b01fb5654fef3eb25453e4 482 SUPERFAMILY SSF143437 1 173 3.14E-47 T 14-10-2018 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 Gene3D G3DSA:3.40.50.80 275 393 2.1E-32 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 62.346 T 14-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 1.2E-17 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 Pfam PF00970 Oxidoreductase FAD-binding domain 204 266 1.2E-9 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 SUPERFAMILY SSF54292 40 124 2.28E-21 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 SUPERFAMILY SSF52343 257 402 2.1E-36 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 Gene3D G3DSA:3.10.20.30 34 125 7.2E-31 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 2.2E-226 T 14-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 373 381 9.7E-5 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 302 311 9.7E-5 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 209 216 9.7E-5 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 276 295 9.7E-5 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 SUPERFAMILY SSF63380 105 272 6.49E-35 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 44 114 1.7E-9 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 Gene3D G3DSA:2.40.30.10 126 264 2.1E-50 T 14-10-2018 RY45_06130 1e05b095a6292e91b008201fb2bfda79 407 PIRSF PIRSF000044 1 407 4.0E-219 T 14-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 RY45_04600 4576e6a5f28aca1b54f458fab591d36a 545 SUPERFAMILY SSF52317 289 541 1.83E-88 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_04600 4576e6a5f28aca1b54f458fab591d36a 545 Pfam PF06418 CTP synthase N-terminus 4 266 8.4E-125 T 14-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RY45_04600 4576e6a5f28aca1b54f458fab591d36a 545 Gene3D G3DSA:3.40.50.300 1 285 2.1E-134 T 14-10-2018 RY45_04600 4576e6a5f28aca1b54f458fab591d36a 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 50.845 T 14-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RY45_04600 4576e6a5f28aca1b54f458fab591d36a 545 SUPERFAMILY SSF52540 3 269 1.46E-120 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04600 4576e6a5f28aca1b54f458fab591d36a 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 4.0E-62 T 14-10-2018 IPR017926 Glutamine amidotransferase RY45_04600 4576e6a5f28aca1b54f458fab591d36a 545 Gene3D G3DSA:3.40.50.880 286 545 2.2E-105 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_04600 4576e6a5f28aca1b54f458fab591d36a 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 7.7E-261 T 14-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 333 84.876 T 14-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 Gene3D G3DSA:3.40.50.1370 151 319 1.6E-144 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 Gene3D G3DSA:3.40.50.1370 5 329 1.6E-144 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 3.0E-44 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 3.6E-26 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 3.6E-26 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 3.6E-26 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 3.6E-26 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 332 8.5E-133 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 1.7E-31 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 1.7E-31 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 1.7E-31 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 230 240 1.7E-31 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 1.7E-31 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 330 1.6E-56 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RY45_21340 13948bed76c97c37741dc11bb587d9a7 334 SUPERFAMILY SSF53671 4 333 2.36E-98 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_17830 a6d8b47af0d652b77cfa77b5f5f7a9f3 109 Gene3D G3DSA:1.20.1290.10 1 109 4.2E-32 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RY45_17830 a6d8b47af0d652b77cfa77b5f5f7a9f3 109 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 40 88 8.6E-17 T 14-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RY45_17830 a6d8b47af0d652b77cfa77b5f5f7a9f3 109 SUPERFAMILY SSF69118 4 106 9.29E-28 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RY45_17830 a6d8b47af0d652b77cfa77b5f5f7a9f3 109 Pfam PF02627 Carboxymuconolactone decarboxylase family 23 105 5.4E-20 T 14-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RY45_01500 cf7c4242d45b269a23ba98b58eeddfce 180 Gene3D G3DSA:1.10.260.40 1 68 4.1E-15 T 14-10-2018 RY45_01500 cf7c4242d45b269a23ba98b58eeddfce 180 SUPERFAMILY SSF47413 1 67 4.83E-15 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_01500 cf7c4242d45b269a23ba98b58eeddfce 180 Gene3D G3DSA:2.60.120.10 69 174 2.4E-19 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_01500 cf7c4242d45b269a23ba98b58eeddfce 180 SMART SM00530 6 61 1.2E-10 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_01500 cf7c4242d45b269a23ba98b58eeddfce 180 Pfam PF01381 Helix-turn-helix 7 58 2.6E-10 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_01500 cf7c4242d45b269a23ba98b58eeddfce 180 Pfam PF07883 Cupin domain 107 173 3.0E-17 T 14-10-2018 IPR013096 Cupin 2, conserved barrel RY45_01500 cf7c4242d45b269a23ba98b58eeddfce 180 SUPERFAMILY SSF51182 46 179 4.58E-28 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_17625 af99384752a050368da2558521be23f8 130 Gene3D G3DSA:3.30.310.230 1 129 2.0E-50 T 14-10-2018 IPR038208 Sigma factor-binding protein Crl superfamily GO:0045893 RY45_17625 af99384752a050368da2558521be23f8 130 Pfam PF07417 Transcriptional regulator Crl 4 119 2.3E-47 T 14-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 RY45_17625 af99384752a050368da2558521be23f8 130 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 1 125 30.018 T 14-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 RY45_01060 019844b544c8ca34f78aa298df681716 493 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 367 4.4E-128 T 14-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RY45_01060 019844b544c8ca34f78aa298df681716 493 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 34 204 5.3E-58 T 14-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RY45_01060 019844b544c8ca34f78aa298df681716 493 Gene3D G3DSA:3.40.50.720 1 208 4.1E-85 T 14-10-2018 RY45_01060 019844b544c8ca34f78aa298df681716 493 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 1.7E-25 T 14-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RY45_01060 019844b544c8ca34f78aa298df681716 493 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 352 484 3.3E-19 T 14-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RY45_01060 019844b544c8ca34f78aa298df681716 493 SUPERFAMILY SSF48179 210 370 1.28E-39 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_01060 019844b544c8ca34f78aa298df681716 493 SUPERFAMILY SSF51735 28 209 3.73E-58 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01060 019844b544c8ca34f78aa298df681716 493 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 487 37.882 T 14-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RY45_01060 019844b544c8ca34f78aa298df681716 493 Gene3D G3DSA:1.10.1040.10 209 493 4.3E-117 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RY45_01060 019844b544c8ca34f78aa298df681716 493 SUPERFAMILY SSF48179 348 486 4.76E-39 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_09465 33592faf2f571d175729a0dc216074b3 355 Gene3D G3DSA:3.40.1780.10 14 348 3.5E-117 T 14-10-2018 RY45_09465 33592faf2f571d175729a0dc216074b3 355 SUPERFAMILY SSF111337 1 348 3.4E-139 T 14-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RY45_09465 33592faf2f571d175729a0dc216074b3 355 Pfam PF02547 Queuosine biosynthesis protein 3 348 1.3E-134 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RY45_09465 33592faf2f571d175729a0dc216074b3 355 Gene3D G3DSA:2.40.10.240 64 166 3.5E-117 T 14-10-2018 RY45_09465 33592faf2f571d175729a0dc216074b3 355 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 349 47.601 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RY45_09465 33592faf2f571d175729a0dc216074b3 355 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 348 1.5E-159 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 1.5E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 207 225 1.5E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 227 244 1.5E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 271 286 1.5E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 1.5E-36 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 Pfam PF01312 FlhB HrpN YscU SpaS Family 6 347 1.6E-122 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 SUPERFAMILY SSF160544 243 351 4.84E-39 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 6 352 5.4E-128 T 14-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 RY45_07260 5c4932e0ea3e30b98b5c51745dc422b4 376 Gene3D G3DSA:3.40.1690.10 216 358 3.7E-56 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_08185 0ef91f7b356abeee15250dfb2cb6cfb3 85 SUPERFAMILY SSF55729 1 83 4.55E-19 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_08185 0ef91f7b356abeee15250dfb2cb6cfb3 85 Pfam PF14542 GCN5-related N-acetyl-transferase 13 83 1.1E-17 T 14-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase RY45_08185 0ef91f7b356abeee15250dfb2cb6cfb3 85 Gene3D G3DSA:3.40.630.30 1 85 2.1E-19 T 14-10-2018 RY45_15315 b1f7a7a4eecf1786d3748a7de7e108ec 564 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 105 468 4.2E-22 T 14-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RY45_15315 b1f7a7a4eecf1786d3748a7de7e108ec 564 Gene3D G3DSA:3.40.640.10 127 447 7.4E-58 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_15315 b1f7a7a4eecf1786d3748a7de7e108ec 564 SUPERFAMILY SSF53383 102 563 9.47E-64 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_05465 e17790fada902cbc98fba3e42b23cb11 378 PIRSF PIRSF000390 1 378 8.2E-108 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RY45_05465 e17790fada902cbc98fba3e42b23cb11 378 Gene3D G3DSA:3.90.1150.10 253 378 1.6E-37 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_05465 e17790fada902cbc98fba3e42b23cb11 378 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 373 1.9E-123 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RY45_05465 e17790fada902cbc98fba3e42b23cb11 378 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 1 378 68.869 T 14-10-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 RY45_05465 e17790fada902cbc98fba3e42b23cb11 378 SUPERFAMILY SSF53383 4 377 4.03E-110 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_05465 e17790fada902cbc98fba3e42b23cb11 378 Gene3D G3DSA:3.40.640.10 1 252 2.4E-89 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_09775 30e6b9174f413286b36e386ee10fe8b7 143 Gene3D G3DSA:3.30.450.20 3 135 3.2E-30 T 14-10-2018 RY45_09775 30e6b9174f413286b36e386ee10fe8b7 143 SUPERFAMILY SSF55785 8 125 7.8E-10 T 14-10-2018 IPR035965 PAS domain superfamily RY45_09775 30e6b9174f413286b36e386ee10fe8b7 143 Pfam PF08448 PAS fold 14 133 4.0E-6 T 14-10-2018 IPR013656 PAS fold-4 RY45_09775 30e6b9174f413286b36e386ee10fe8b7 143 SMART SM00091 7 73 0.002 T 14-10-2018 IPR000014 PAS domain RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.893 T 14-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 TIGRFAM TIGR01083 nth: endonuclease III 4 194 2.0E-89 T 14-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.5E-4 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 Gene3D G3DSA:1.10.340.30 21 132 3.3E-79 T 14-10-2018 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 8.1E-18 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 14-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 Pfam PF00633 Helix-hairpin-helix motif 99 127 3.0E-8 T 14-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 14-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 SMART SM00525 186 206 6.5E-6 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 SMART SM00478 38 185 8.7E-54 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 SUPERFAMILY SSF48150 2 207 1.33E-72 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 Gene3D G3DSA:1.10.1670.10 11 203 3.3E-79 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RY45_13690 0af70c1edc6f8556aa40de34b4ab2f2b 213 PIRSF PIRSF001435 1 210 2.0E-52 T 14-10-2018 RY45_10330 0d50c7c824df70f808029a2362d4ae2c 238 SUPERFAMILY SSF46548 107 234 9.24E-40 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_10330 0d50c7c824df70f808029a2362d4ae2c 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 4.4E-85 T 14-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10330 0d50c7c824df70f808029a2362d4ae2c 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 4.2E-10 T 14-10-2018 RY45_10330 0d50c7c824df70f808029a2362d4ae2c 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 111 3.1E-30 T 14-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10330 0d50c7c824df70f808029a2362d4ae2c 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_10330 0d50c7c824df70f808029a2362d4ae2c 238 SUPERFAMILY SSF54292 1 106 5.97E-30 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_10330 0d50c7c824df70f808029a2362d4ae2c 238 Gene3D G3DSA:1.10.1060.10 107 238 3.6E-56 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_10330 0d50c7c824df70f808029a2362d4ae2c 238 Gene3D G3DSA:3.10.20.30 1 106 2.8E-33 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_13095 1b603a4f287566e0f840d5a395d9c94d 567 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 543 552 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 RY45_13095 1b603a4f287566e0f840d5a395d9c94d 567 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 RY45_13095 1b603a4f287566e0f840d5a395d9c94d 567 Gene3D G3DSA:1.10.645.10 1 552 4.4E-216 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_13095 1b603a4f287566e0f840d5a395d9c94d 567 Pfam PF00374 Nickel-dependent hydrogenase 39 552 7.2E-209 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RY45_13095 1b603a4f287566e0f840d5a395d9c94d 567 SUPERFAMILY SSF56762 1 552 7.59E-168 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12295 9f25bd319ccb7426ddd36477f5d4036c 163 SUPERFAMILY SSF55826 3 158 2.88E-39 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RY45_12295 9f25bd319ccb7426ddd36477f5d4036c 163 Gene3D G3DSA:3.90.960.10 1 162 1.6E-47 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RY45_12295 9f25bd319ccb7426ddd36477f5d4036c 163 Pfam PF04073 Aminoacyl-tRNA editing domain 19 145 5.9E-28 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RY45_16060 40aae7aa3ff712ec4c892564f68b4c7f 178 Gene3D G3DSA:3.90.280.10 14 176 3.5E-53 T 14-10-2018 IPR036610 PEBP-like superfamily RY45_16060 40aae7aa3ff712ec4c892564f68b4c7f 178 SUPERFAMILY SSF49777 23 176 1.31E-48 T 14-10-2018 IPR036610 PEBP-like superfamily RY45_16060 40aae7aa3ff712ec4c892564f68b4c7f 178 Pfam PF01161 Phosphatidylethanolamine-binding protein 40 175 1.5E-35 T 14-10-2018 IPR008914 Phosphatidylethanolamine-binding protein RY45_16060 40aae7aa3ff712ec4c892564f68b4c7f 178 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 42 173 1.2E-39 T 14-10-2018 IPR005247 YbhB/YbcL RY45_03750 d5c107c3f65b18716aa08ea7da96e836 199 SUPERFAMILY SSF81901 61 195 8.37E-19 T 14-10-2018 RY45_03750 d5c107c3f65b18716aa08ea7da96e836 199 SMART SM00671 63 98 0.19 T 14-10-2018 IPR006597 Sel1-like repeat RY45_03750 d5c107c3f65b18716aa08ea7da96e836 199 SMART SM00671 99 134 0.0013 T 14-10-2018 IPR006597 Sel1-like repeat RY45_03750 d5c107c3f65b18716aa08ea7da96e836 199 Gene3D G3DSA:1.25.40.10 24 199 6.5E-22 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_03750 d5c107c3f65b18716aa08ea7da96e836 199 Pfam PF08238 Sel1 repeat 66 97 51.0 T 14-10-2018 IPR006597 Sel1-like repeat RY45_03750 d5c107c3f65b18716aa08ea7da96e836 199 Pfam PF08238 Sel1 repeat 144 163 3.4 T 14-10-2018 IPR006597 Sel1-like repeat RY45_03750 d5c107c3f65b18716aa08ea7da96e836 199 Pfam PF08238 Sel1 repeat 100 133 0.0018 T 14-10-2018 IPR006597 Sel1-like repeat RY45_04740 4dfb7d2961e047a5502f7eb21b18b0a3 349 Gene3D G3DSA:3.30.360.10 126 326 1.2E-129 T 14-10-2018 RY45_04740 4dfb7d2961e047a5502f7eb21b18b0a3 349 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 119 2.9E-23 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RY45_04740 4dfb7d2961e047a5502f7eb21b18b0a3 349 Gene3D G3DSA:3.40.50.720 5 315 1.2E-129 T 14-10-2018 RY45_04740 4dfb7d2961e047a5502f7eb21b18b0a3 349 SUPERFAMILY SSF51735 2 156 4.04E-48 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_04740 4dfb7d2961e047a5502f7eb21b18b0a3 349 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 133 240 3.8E-12 T 14-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RY45_04740 4dfb7d2961e047a5502f7eb21b18b0a3 349 SUPERFAMILY SSF55347 129 280 5.23E-26 T 14-10-2018 RY45_17910 645039d88f2aedc0fa8fbb0f114112da 355 Pfam PF04389 Peptidase family M28 93 328 6.9E-35 T 14-10-2018 IPR007484 Peptidase M28 RY45_17910 645039d88f2aedc0fa8fbb0f114112da 355 SUPERFAMILY SSF53187 30 350 1.2E-54 T 14-10-2018 RY45_01530 96f1a3df4335b219a52eeecefa94bbe9 150 Gene3D G3DSA:1.10.10.10 1 137 3.8E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01530 96f1a3df4335b219a52eeecefa94bbe9 150 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 14-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site RY45_01530 96f1a3df4335b219a52eeecefa94bbe9 150 Pfam PF02082 Transcriptional regulator 1 80 6.7E-23 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type RY45_01530 96f1a3df4335b219a52eeecefa94bbe9 150 SUPERFAMILY SSF46785 2 132 2.37E-30 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_01530 96f1a3df4335b219a52eeecefa94bbe9 150 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 129 2.3E-32 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type RY45_17575 499dd4ecc77e99ca0eba561b03e54797 443 Pfam PF13379 NMT1-like family 16 296 1.8E-101 T 14-10-2018 RY45_17575 499dd4ecc77e99ca0eba561b03e54797 443 SUPERFAMILY SSF53850 19 282 7.6E-19 T 14-10-2018 RY45_17575 499dd4ecc77e99ca0eba561b03e54797 443 Gene3D G3DSA:3.40.190.10 107 425 1.4E-136 T 14-10-2018 RY45_17575 499dd4ecc77e99ca0eba561b03e54797 443 Gene3D G3DSA:3.40.190.10 22 420 1.4E-136 T 14-10-2018 RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 540 556 - T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 Pfam PF02378 Phosphotransferase system, EIIC 18 277 9.9E-18 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 Gene3D G3DSA:3.40.50.2300 368 470 3.6E-33 T 14-10-2018 RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 380 456 3.2E-11 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 Gene3D G3DSA:3.40.930.10 491 637 8.7E-44 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 SUPERFAMILY SSF55804 497 634 2.09E-36 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 344 6.6E-170 T 14-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 SUPERFAMILY SSF52794 378 467 2.62E-22 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RY45_03195 60e4acec213e7e8c27116bbd58f61d1e 640 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 498 634 4.3E-30 T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_00345 090a093a63cead84a76b35a3d037155d 100 Gene3D G3DSA:3.30.70.120 2 100 1.3E-26 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_00345 090a093a63cead84a76b35a3d037155d 100 SUPERFAMILY SSF54913 2 100 3.61E-19 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 Pfam PF00248 Aldo/keto reductase family 7 251 1.8E-45 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 PRINTS PR00069 Aldo-keto reductase signature 187 211 2.8E-42 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 PRINTS PR00069 Aldo-keto reductase signature 26 50 2.8E-42 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 PRINTS PR00069 Aldo-keto reductase signature 115 132 2.8E-42 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 PRINTS PR00069 Aldo-keto reductase signature 150 179 2.8E-42 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 PRINTS PR00069 Aldo-keto reductase signature 82 100 2.8E-42 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 SUPERFAMILY SSF51430 3 261 2.62E-79 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 30 47 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 PIRSF PIRSF000097 1 267 1.2E-61 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RY45_09000 b8c6d61b78e12f83c3dff8e305d60160 267 Gene3D G3DSA:3.20.20.100 1 267 1.3E-87 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RY45_05775 0c3f8a77eb9ac5a81c2aa19cb673f98a 276 Gene3D G3DSA:3.40.225.10 10 267 4.8E-73 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RY45_05775 0c3f8a77eb9ac5a81c2aa19cb673f98a 276 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 17 249 1.2E-24 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal RY45_05775 0c3f8a77eb9ac5a81c2aa19cb673f98a 276 SUPERFAMILY SSF53639 8 275 5.49E-50 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RY45_05775 0c3f8a77eb9ac5a81c2aa19cb673f98a 276 SMART SM01007 16 250 1.5E-17 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal RY45_01440 d05881363b5c409524e28ae0840a2531 170 SUPERFAMILY SSF51182 34 139 1.07E-20 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_01440 d05881363b5c409524e28ae0840a2531 170 Gene3D G3DSA:2.60.120.10 13 151 2.5E-29 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_01440 d05881363b5c409524e28ae0840a2531 170 Pfam PF07883 Cupin domain 48 118 1.5E-18 T 14-10-2018 IPR013096 Cupin 2, conserved barrel RY45_20170 266372b6b8d550dc30c4cd189caa42d6 315 Pfam PF00691 OmpA family 181 270 4.2E-13 T 14-10-2018 IPR006665 OmpA-like domain RY45_20170 266372b6b8d550dc30c4cd189caa42d6 315 Gene3D G3DSA:3.30.1330.60 133 314 1.4E-44 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_20170 266372b6b8d550dc30c4cd189caa42d6 315 SUPERFAMILY SSF103088 166 282 1.7E-19 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_20170 266372b6b8d550dc30c4cd189caa42d6 315 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 12 63 2.1E-13 T 14-10-2018 IPR025713 Motility protein B, N-terminal domain RY45_20625 28b6a182130bb938e56763ea2d5b3a59 189 SUPERFAMILY SSF51182 51 185 8.43E-25 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_20625 28b6a182130bb938e56763ea2d5b3a59 189 Gene3D G3DSA:1.10.260.40 1 74 1.8E-18 T 14-10-2018 RY45_20625 28b6a182130bb938e56763ea2d5b3a59 189 SMART SM00530 11 66 2.4E-12 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_20625 28b6a182130bb938e56763ea2d5b3a59 189 Pfam PF01381 Helix-turn-helix 14 64 3.5E-12 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_20625 28b6a182130bb938e56763ea2d5b3a59 189 Pfam PF07883 Cupin domain 113 178 2.6E-10 T 14-10-2018 IPR013096 Cupin 2, conserved barrel RY45_20625 28b6a182130bb938e56763ea2d5b3a59 189 SUPERFAMILY SSF47413 2 71 4.56E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_20625 28b6a182130bb938e56763ea2d5b3a59 189 Gene3D G3DSA:2.60.120.10 93 188 2.4E-30 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_16020 f6f89ddc776148e8e26a437f24f5e980 335 Pfam PF01343 Peptidase family S49 149 296 1.2E-44 T 14-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RY45_16020 f6f89ddc776148e8e26a437f24f5e980 335 Gene3D G3DSA:3.90.226.10 124 289 1.5E-41 T 14-10-2018 RY45_16020 f6f89ddc776148e8e26a437f24f5e980 335 SUPERFAMILY SSF52096 91 287 1.11E-28 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_16020 f6f89ddc776148e8e26a437f24f5e980 335 Gene3D G3DSA:3.40.1750.20 190 254 1.5E-41 T 14-10-2018 RY45_16020 f6f89ddc776148e8e26a437f24f5e980 335 Pfam PF08496 Peptidase family S49 N-terminal 3 146 3.7E-52 T 14-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 Pfam PF00874 PRD domain 299 386 1.9E-14 T 14-10-2018 IPR011608 PRD domain GO:0006355 RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 Pfam PF08279 HTH domain 8 64 4.8E-11 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 SUPERFAMILY SSF46785 5 65 5.69E-6 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 Gene3D G3DSA:1.10.1790.10 292 389 5.6E-13 T 14-10-2018 RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 Pfam PF05043 Mga helix-turn-helix domain 98 166 5.3E-8 T 14-10-2018 IPR007737 Mga helix-turn-helix domain RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 507 628 5.0E-15 T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 SUPERFAMILY SSF63520 292 391 2.09E-17 T 14-10-2018 IPR036634 PRD domain superfamily GO:0006355 RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 Gene3D G3DSA:1.10.10.10 4 66 2.9E-10 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 SUPERFAMILY SSF55804 494 629 2.79E-22 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_20490 8e4f5d9a66eb0b9fb57d1b6e432c5ca5 634 Gene3D G3DSA:3.40.930.10 495 631 3.2E-13 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_15480 e1b0a98f9fc4d53e9480e84fcec025a3 429 Pfam PF00202 Aminotransferase class-III 26 424 1.7E-131 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_15480 e1b0a98f9fc4d53e9480e84fcec025a3 429 Gene3D G3DSA:3.90.1150.10 11 420 5.0E-165 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_15480 e1b0a98f9fc4d53e9480e84fcec025a3 429 PIRSF PIRSF000521 126 427 1.8E-40 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_15480 e1b0a98f9fc4d53e9480e84fcec025a3 429 PIRSF PIRSF000521 17 133 2.0E-5 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_15480 e1b0a98f9fc4d53e9480e84fcec025a3 429 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 13 424 4.5E-178 T 14-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 RY45_15480 e1b0a98f9fc4d53e9480e84fcec025a3 429 Gene3D G3DSA:3.40.640.10 62 321 5.0E-165 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_15480 e1b0a98f9fc4d53e9480e84fcec025a3 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 276 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_15480 e1b0a98f9fc4d53e9480e84fcec025a3 429 SUPERFAMILY SSF53383 25 424 2.66E-136 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 432 29.227 T 14-10-2018 IPR026593 Protein translocase subunit SecY RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 Gene3D G3DSA:1.10.3370.10 10 428 1.7E-158 T 14-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 115 138 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 269 288 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 151 176 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 74 94 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 177 200 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 369 387 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 314 336 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 401 419 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 22 40 2.4E-92 T 14-10-2018 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 Pfam PF00344 SecY translocase 75 416 7.4E-116 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 SUPERFAMILY SSF103491 14 423 8.76E-130 T 14-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 ProSitePatterns PS00756 Protein secY signature 2. 170 187 - T 14-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 ProSitePatterns PS00755 Protein secY signature 1. 75 94 - T 14-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 19 428 1.6E-133 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_01935 198bb84ecdc093e2d9b21dc24c1aad73 442 PIRSF PIRSF004557 6 440 2.1E-120 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_12735 6c6b763a8416353b697a39c032da9703 265 Gene3D G3DSA:3.30.1150.10 128 264 3.2E-22 T 14-10-2018 RY45_12735 6c6b763a8416353b697a39c032da9703 265 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 187 263 7.7E-22 T 14-10-2018 IPR006260 TonB/TolA, C-terminal RY45_12735 6c6b763a8416353b697a39c032da9703 265 SUPERFAMILY SSF74653 182 261 3.27E-22 T 14-10-2018 RY45_12735 6c6b763a8416353b697a39c032da9703 265 PRINTS PR01374 Gram-negative bacterial tonB protein signature 181 202 4.0E-5 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RY45_12735 6c6b763a8416353b697a39c032da9703 265 PRINTS PR01374 Gram-negative bacterial tonB protein signature 202 220 4.0E-5 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RY45_12735 6c6b763a8416353b697a39c032da9703 265 PRINTS PR01374 Gram-negative bacterial tonB protein signature 93 103 4.0E-5 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RY45_12735 6c6b763a8416353b697a39c032da9703 265 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 185 263 7.5E-22 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 RY45_06495 5e90413bfe8c114284f7c89481519987 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 3.9E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06495 5e90413bfe8c114284f7c89481519987 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 3.9E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06495 5e90413bfe8c114284f7c89481519987 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 3.9E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06495 5e90413bfe8c114284f7c89481519987 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06495 5e90413bfe8c114284f7c89481519987 214 Pfam PF00072 Response regulator receiver domain 7 120 5.8E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_06495 5e90413bfe8c114284f7c89481519987 214 SMART SM00448 5 119 1.9E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_06495 5e90413bfe8c114284f7c89481519987 214 Gene3D G3DSA:1.10.10.10 149 213 2.5E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06495 5e90413bfe8c114284f7c89481519987 214 SMART SM00421 149 206 1.3E-19 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06495 5e90413bfe8c114284f7c89481519987 214 SUPERFAMILY SSF46894 143 211 1.16E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_06495 5e90413bfe8c114284f7c89481519987 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 204 8.5E-18 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06495 5e90413bfe8c114284f7c89481519987 214 Gene3D G3DSA:3.40.50.2300 3 132 1.9E-24 T 14-10-2018 RY45_06495 5e90413bfe8c114284f7c89481519987 214 SUPERFAMILY SSF52172 5 129 2.85E-25 T 14-10-2018 IPR011006 CheY-like superfamily RY45_20960 370154b0e392007fdc86c3b40a9aad58 110 Pfam PF07883 Cupin domain 40 109 3.3E-8 T 14-10-2018 IPR013096 Cupin 2, conserved barrel RY45_20960 370154b0e392007fdc86c3b40a9aad58 110 Gene3D G3DSA:2.60.120.10 16 110 4.4E-34 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_20960 370154b0e392007fdc86c3b40a9aad58 110 SUPERFAMILY SSF51182 5 110 1.83E-16 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_03505 84603633f5be9d0bcaf4e78413d2421c 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 248 2.7E-20 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_03505 84603633f5be9d0bcaf4e78413d2421c 263 Gene3D G3DSA:3.40.190.10 32 246 1.7E-26 T 14-10-2018 RY45_03505 84603633f5be9d0bcaf4e78413d2421c 263 Gene3D G3DSA:3.40.190.10 112 207 1.7E-26 T 14-10-2018 RY45_03505 84603633f5be9d0bcaf4e78413d2421c 263 SUPERFAMILY SSF53850 28 251 1.3E-33 T 14-10-2018 RY45_14885 831ca9bdc12ae62675be129e86aebb01 216 SUPERFAMILY SSF51569 1 214 4.19E-60 T 14-10-2018 RY45_14885 831ca9bdc12ae62675be129e86aebb01 216 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 206 1.8E-38 T 14-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RY45_14885 831ca9bdc12ae62675be129e86aebb01 216 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 214 5.1E-79 T 14-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RY45_14885 831ca9bdc12ae62675be129e86aebb01 216 Gene3D G3DSA:3.20.20.70 1 216 1.4E-75 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_14885 831ca9bdc12ae62675be129e86aebb01 216 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RY45_18085 8691f240fffd9e2511ce76432108dadb 464 Gene3D G3DSA:1.10.3080.10 17 456 4.4E-133 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 RY45_18085 8691f240fffd9e2511ce76432108dadb 464 PRINTS PR00762 Chloride channel signature 178 197 1.5E-27 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RY45_18085 8691f240fffd9e2511ce76432108dadb 464 PRINTS PR00762 Chloride channel signature 400 419 1.5E-27 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RY45_18085 8691f240fffd9e2511ce76432108dadb 464 PRINTS PR00762 Chloride channel signature 382 398 1.5E-27 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RY45_18085 8691f240fffd9e2511ce76432108dadb 464 PRINTS PR00762 Chloride channel signature 98 115 1.5E-27 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RY45_18085 8691f240fffd9e2511ce76432108dadb 464 PRINTS PR00762 Chloride channel signature 347 367 1.5E-27 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RY45_18085 8691f240fffd9e2511ce76432108dadb 464 Pfam PF00654 Voltage gated chloride channel 85 433 1.2E-90 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RY45_18085 8691f240fffd9e2511ce76432108dadb 464 SUPERFAMILY SSF81340 21 447 4.05E-107 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 176 331 4.9E-40 T 14-10-2018 IPR000160 GGDEF domain RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 Pfam PF00990 Diguanylate cyclase, GGDEF domain 177 330 2.7E-38 T 14-10-2018 IPR000160 GGDEF domain RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 SMART SM00267 167 332 3.4E-42 T 14-10-2018 IPR000160 GGDEF domain RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 Gene3D G3DSA:3.30.450.20 13 129 2.5E-28 T 14-10-2018 RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 Pfam PF08447 PAS fold 39 127 2.8E-23 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 SMART SM00091 16 84 8.3E-6 T 14-10-2018 IPR000014 PAS domain RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 SUPERFAMILY SSF55785 21 135 5.41E-22 T 14-10-2018 IPR035965 PAS domain superfamily RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 SUPERFAMILY SSF55073 182 332 2.9E-41 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 Gene3D G3DSA:3.30.70.270 163 333 3.5E-49 T 14-10-2018 RY45_20750 b00ea7975edaf105594c7c31acdc85dd 333 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 139 2.1E-9 T 14-10-2018 IPR000014 PAS domain RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 Gene3D G3DSA:3.40.190.10 119 310 1.4E-47 T 14-10-2018 RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 83 1.4E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 SUPERFAMILY SSF53850 106 318 2.17E-34 T 14-10-2018 RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 60 4.9E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.9E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 60 71 4.9E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 Gene3D G3DSA:3.40.190.10 179 285 1.4E-47 T 14-10-2018 RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 Gene3D G3DSA:1.10.10.10 22 109 3.4E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 SUPERFAMILY SSF46785 24 130 4.54E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 TIGRFAM TIGR02036 dsdC: D-serine deaminase transcriptional activator 16 314 2.3E-145 T 14-10-2018 IPR011781 D-serine deaminase transcriptional activator RY45_07590 2a5bdbb1d60761a86519c2962115c1a0 322 Pfam PF03466 LysR substrate binding domain 105 313 2.8E-33 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_09370 642732ab6b28b7cff6a180a89918f924 189 SUPERFAMILY SSF101327 7 175 1.83E-37 T 14-10-2018 IPR036255 YgfB-like superfamily RY45_09370 642732ab6b28b7cff6a180a89918f924 189 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 16 151 1.5E-11 T 14-10-2018 IPR011978 Uncharacterised protein family UPF0149 RY45_09370 642732ab6b28b7cff6a180a89918f924 189 Gene3D G3DSA:1.20.120.740 4 189 2.1E-51 T 14-10-2018 RY45_09370 642732ab6b28b7cff6a180a89918f924 189 Pfam PF03695 Uncharacterised protein family (UPF0149) 12 176 1.3E-34 T 14-10-2018 IPR011978 Uncharacterised protein family UPF0149 RY45_01105 d2c3826ee2391ab1ce4ccedaa8bd2361 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.053 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01105 d2c3826ee2391ab1ce4ccedaa8bd2361 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 14-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01105 d2c3826ee2391ab1ce4ccedaa8bd2361 55 Gene3D G3DSA:2.20.28.120 1 55 3.6E-30 T 14-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01105 d2c3826ee2391ab1ce4ccedaa8bd2361 55 SUPERFAMILY SSF57829 1 53 4.27E-19 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RY45_01105 d2c3826ee2391ab1ce4ccedaa8bd2361 55 Pfam PF00471 Ribosomal protein L33 7 53 2.3E-17 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01105 d2c3826ee2391ab1ce4ccedaa8bd2361 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 7.2E-27 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_10680 908da01de938019ccd47710274d9ab23 640 Pfam PF08298 PrkA AAA domain 20 376 8.3E-173 T 14-10-2018 IPR013153 PrkA AAA domain RY45_10680 908da01de938019ccd47710274d9ab23 640 SUPERFAMILY SSF52540 75 364 2.6E-16 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10680 908da01de938019ccd47710274d9ab23 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 1.2E-73 T 14-10-2018 IPR010650 PrkA C-terminal domain RY45_10680 908da01de938019ccd47710274d9ab23 640 SMART SM00763 19 376 4.7E-210 T 14-10-2018 IPR013153 PrkA AAA domain RY45_10680 908da01de938019ccd47710274d9ab23 640 PIRSF PIRSF000549 1 640 1.0E-289 T 14-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 RY45_14615 336ff864cf643d57fc25674b2cd0ed93 96 ProDom PD020173 BOR LIPOPROTEIN PLASMID ISS HOMOLOG MEMBRANE FROM PRECURSOR PALMITATE DLP12 16 95 1.0E-28 T 14-10-2018 IPR010438 Bor GO:0009279 RY45_14615 336ff864cf643d57fc25674b2cd0ed93 96 Pfam PF06291 Bor protein 21 94 3.2E-31 T 14-10-2018 IPR010438 Bor GO:0009279 RY45_08040 b3665fe7e3a0f2a060fddd8462fd2462 367 SUPERFAMILY SSF51445 16 323 1.12E-83 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_08040 b3665fe7e3a0f2a060fddd8462fd2462 367 Pfam PF07555 beta-N-acetylglucosaminidase 18 307 8.7E-53 T 14-10-2018 IPR011496 Beta-N-acetylglucosaminidase MetaCyc: PWY-7437 RY45_08040 b3665fe7e3a0f2a060fddd8462fd2462 367 Gene3D G3DSA:3.20.20.80 16 316 3.7E-71 T 14-10-2018 RY45_07450 9534454f7e1dee8b5a217b5be0c99b81 204 Gene3D G3DSA:1.10.3890.10 2 204 8.6E-75 T 14-10-2018 IPR035932 HflD-like superfamily RY45_07450 9534454f7e1dee8b5a217b5be0c99b81 204 Pfam PF04356 Protein of unknown function (DUF489) 7 198 1.2E-76 T 14-10-2018 IPR007451 High frequency lysogenization protein HflD RY45_07450 9534454f7e1dee8b5a217b5be0c99b81 204 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 197 1.0E-58 T 14-10-2018 RY45_07450 9534454f7e1dee8b5a217b5be0c99b81 204 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 204 35.046 T 14-10-2018 IPR007451 High frequency lysogenization protein HflD RY45_07450 9534454f7e1dee8b5a217b5be0c99b81 204 SUPERFAMILY SSF101322 1 203 3.66E-77 T 14-10-2018 IPR035932 HflD-like superfamily RY45_10030 2bb94ff3c10def464f7f91e3cbe1e28e 202 SUPERFAMILY SSF89392 21 202 2.94E-51 T 14-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RY45_10030 2bb94ff3c10def464f7f91e3cbe1e28e 202 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 9 201 30.024 T 14-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 RY45_10030 2bb94ff3c10def464f7f91e3cbe1e28e 202 Gene3D G3DSA:2.50.20.10 18 202 5.5E-50 T 14-10-2018 RY45_10030 2bb94ff3c10def464f7f91e3cbe1e28e 202 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 3 202 1.9E-61 T 14-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 RY45_10030 2bb94ff3c10def464f7f91e3cbe1e28e 202 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 33 191 1.8E-48 T 14-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RY45_03890 8a21a6aab29404fa9266fb7177b19f5a 167 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 25 8.9E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03890 8a21a6aab29404fa9266fb7177b19f5a 167 Gene3D G3DSA:3.55.40.10 30 167 9.3E-15 T 14-10-2018 RY45_03890 8a21a6aab29404fa9266fb7177b19f5a 167 ProSitePatterns PS00018 EF-hand calcium-binding domain. 87 99 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site RY45_03890 8a21a6aab29404fa9266fb7177b19f5a 167 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 2.1E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03890 8a21a6aab29404fa9266fb7177b19f5a 167 Pfam PF12019 Type II transport protein GspH 42 157 4.2E-18 T 14-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 RY45_03890 8a21a6aab29404fa9266fb7177b19f5a 167 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03890 8a21a6aab29404fa9266fb7177b19f5a 167 SUPERFAMILY SSF54523 7 141 2.51E-21 T 14-10-2018 RY45_11515 d3055dc63ee317b77f472aebf4830b4a 110 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 15 104 7.4E-24 T 14-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein RY45_11515 d3055dc63ee317b77f472aebf4830b4a 110 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 13 104 3.1E-16 T 14-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein RY45_06415 12b26a0f1959319b65c9b22ddf8d1ef7 346 Gene3D G3DSA:3.60.15.10 50 333 1.3E-55 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_06415 12b26a0f1959319b65c9b22ddf8d1ef7 346 SMART SM00849 66 266 8.8E-9 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_06415 12b26a0f1959319b65c9b22ddf8d1ef7 346 Pfam PF12706 Beta-lactamase superfamily domain 98 290 1.3E-18 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_06415 12b26a0f1959319b65c9b22ddf8d1ef7 346 SUPERFAMILY SSF56281 50 324 6.63E-48 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_05140 c395c5414161da821478e989b4a520bc 323 Pfam PF00348 Polyprenyl synthetase 32 270 5.5E-78 T 14-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RY45_05140 c395c5414161da821478e989b4a520bc 323 SUPERFAMILY SSF48576 6 322 5.12E-102 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily RY45_05140 c395c5414161da821478e989b4a520bc 323 Gene3D G3DSA:1.10.600.10 1 323 1.1E-117 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily RY45_05140 c395c5414161da821478e989b4a520bc 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site RY45_05140 c395c5414161da821478e989b4a520bc 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site RY45_09400 4b7b5e7a1f59ce6b3f96fc9ee518928a 357 Pfam PF03773 Predicted permease 13 354 1.4E-51 T 14-10-2018 IPR005524 Predicted permease DUF318 RY45_13020 aba327c87e5e5bdd0a7b6b7beb8353fb 478 SUPERFAMILY SSF53383 87 464 3.92E-35 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_13020 aba327c87e5e5bdd0a7b6b7beb8353fb 478 Gene3D G3DSA:3.90.1150.110 26 453 1.6E-129 T 14-10-2018 RY45_13020 aba327c87e5e5bdd0a7b6b7beb8353fb 478 Pfam PF03841 L-seryl-tRNA selenium transferase 96 448 5.7E-97 T 14-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RY45_13020 aba327c87e5e5bdd0a7b6b7beb8353fb 478 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 24 462 1.2E-153 T 14-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RY45_13020 aba327c87e5e5bdd0a7b6b7beb8353fb 478 Gene3D G3DSA:3.40.640.10 108 366 1.6E-129 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_13020 aba327c87e5e5bdd0a7b6b7beb8353fb 478 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 466 163.01 T 14-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RY45_13020 aba327c87e5e5bdd0a7b6b7beb8353fb 478 Pfam PF12390 Selenocysteine synthase N terminal 24 62 2.4E-8 T 14-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RY45_02095 877b32e09ec27f66b1a398603346a109 53 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 3 53 17.848 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RY45_02095 877b32e09ec27f66b1a398603346a109 53 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 50 4.6E-20 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RY45_02095 877b32e09ec27f66b1a398603346a109 53 Pfam PF02416 mttA/Hcf106 family 8 50 4.1E-15 T 14-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 14-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 2.3E-24 T 14-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 Gene3D G3DSA:1.10.1040.10 206 381 4.7E-69 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 SUPERFAMILY SSF51735 1 201 3.94E-42 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 377 40.985 T 14-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 PRINTS PR00084 Mannitol dehydrogenase signature 169 184 3.5E-17 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 3.5E-17 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 3.5E-17 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 3.5E-17 T 14-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 Gene3D G3DSA:3.40.50.720 1 204 1.0E-77 T 14-10-2018 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 SUPERFAMILY SSF48179 203 380 6.8E-47 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_03190 bdea83ae488dca2e296592d4293fbbdd 381 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 150 371 7.7E-58 T 14-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 RY45_13230 0c299b2462154b49ffc342439a674ed0 395 SUPERFAMILY SSF103473 8 391 1.22E-60 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_13230 0c299b2462154b49ffc342439a674ed0 395 Gene3D G3DSA:1.20.1720.10 11 390 1.1E-106 T 14-10-2018 RY45_13230 0c299b2462154b49ffc342439a674ed0 395 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 12 391 2.5E-105 T 14-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 RY45_13230 0c299b2462154b49ffc342439a674ed0 395 Pfam PF07690 Major Facilitator Superfamily 19 359 1.7E-42 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 SUPERFAMILY SSF46689 195 245 2.62E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 Gene3D G3DSA:2.60.120.10 41 91 6.2E-6 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 SMART SM00342 212 296 8.4E-24 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 Gene3D G3DSA:1.10.10.60 192 300 4.9E-23 T 14-10-2018 RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 Pfam PF12852 Cupin 5 179 1.8E-28 T 14-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 SUPERFAMILY SSF46689 248 299 2.73E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 SUPERFAMILY SSF51182 43 87 2.29E-6 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 280 296 8.1E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 265 280 8.1E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 249 292 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_17835 b5a071bb447e5ddb0d2beb2eec93ceac 305 Pfam PF12833 Helix-turn-helix domain 218 298 3.4E-17 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_04795 605757f90b66adfa1d36542f7aef9ec0 466 PIRSF PIRSF006603 18 462 1.1E-119 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_04795 605757f90b66adfa1d36542f7aef9ec0 466 TIGRFAM TIGR00797 matE: MATE efflux family protein 38 425 2.2E-62 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_04795 605757f90b66adfa1d36542f7aef9ec0 466 Pfam PF01554 MatE 38 197 1.9E-28 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_04795 605757f90b66adfa1d36542f7aef9ec0 466 Pfam PF01554 MatE 263 424 5.2E-24 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 Gene3D G3DSA:1.10.287.990 20 82 4.1E-26 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 SUPERFAMILY SSF46609 1 84 1.03E-35 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 158 165 - T 14-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 6.0E-35 T 14-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 190 1.0E-36 T 14-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 PIRSF PIRSF000349 1 194 1.7E-83 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 1.7E-21 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 PRINTS PR01703 Manganese superoxide dismutase signature 156 168 1.7E-21 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.7E-21 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.7E-21 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 1.7E-21 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 Gene3D G3DSA:2.40.500.20 83 194 7.7E-41 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_07385 427d55a4455eb64168c45719bf0d8999 194 SUPERFAMILY SSF54719 84 193 5.89E-43 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RY45_18220 b1beceba0db6b42d32867540f9bcdadf 383 Gene3D G3DSA:3.40.50.11900 240 383 1.1E-37 T 14-10-2018 RY45_18220 b1beceba0db6b42d32867540f9bcdadf 383 Gene3D G3DSA:3.40.50.11890 33 159 3.4E-34 T 14-10-2018 RY45_18220 b1beceba0db6b42d32867540f9bcdadf 383 Gene3D G3DSA:1.20.1270.370 27 223 3.4E-34 T 14-10-2018 RY45_18220 b1beceba0db6b42d32867540f9bcdadf 383 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 40 383 1.1E-82 T 14-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit RY45_11220 f713910c829a931d08c425b21269b478 351 SUPERFAMILY SSF102114 25 264 1.96E-11 T 14-10-2018 RY45_11220 f713910c829a931d08c425b21269b478 351 Pfam PF04055 Radical SAM superfamily 67 244 6.5E-10 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 ProSitePatterns PS00211 ABC transporters family signature. 413 427 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 SUPERFAMILY SSF52540 7 230 1.97E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 SMART SM00382 286 489 0.2 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 SMART SM00382 33 221 2.4E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 Gene3D G3DSA:3.40.50.300 1 251 6.7E-57 T 14-10-2018 RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 Pfam PF00005 ABC transporter 25 172 2.0E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 Pfam PF00005 ABC transporter 278 440 6.7E-16 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 SUPERFAMILY SSF52540 249 495 3.52E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01375 2194330798b43c511bf9c6f761d04c4e 526 Gene3D G3DSA:3.40.50.300 259 504 4.7E-37 T 14-10-2018 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 SMART SM01193 4 134 2.7E-92 T 14-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 Hamap MF_00318 Enolase [eno]. 2 417 44.394 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 SUPERFAMILY SSF51604 144 430 2.12E-127 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RY45_04605 461d66afe3cde53149e82f8226293ee3 433 Pfam PF03952 Enolase, N-terminal domain 4 134 1.5E-57 T 14-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 Gene3D G3DSA:3.30.390.10 1 127 1.3E-54 T 14-10-2018 IPR029017 Enolase-like, N-terminal RY45_04605 461d66afe3cde53149e82f8226293ee3 433 PIRSF PIRSF001400 1 431 5.6E-192 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 SMART SM01192 143 431 2.0E-213 T 14-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 SUPERFAMILY SSF54826 3 138 1.5E-55 T 14-10-2018 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 ProSitePatterns PS00164 Enolase signature. 340 353 - T 14-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 431 4.4E-207 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 431 1.0E-137 T 14-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 PRINTS PR00148 Enolase signature 369 386 4.0E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 PRINTS PR00148 Enolase signature 317 328 4.0E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 PRINTS PR00148 Enolase signature 165 178 4.0E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 PRINTS PR00148 Enolase signature 340 354 4.0E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 PRINTS PR00148 Enolase signature 37 51 4.0E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 PRINTS PR00148 Enolase signature 107 123 4.0E-44 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RY45_04605 461d66afe3cde53149e82f8226293ee3 433 Gene3D G3DSA:3.20.20.120 128 433 1.0E-132 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RY45_12790 e8ee4fef4579d3040fac34e38213541f 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 14-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 RY45_12790 e8ee4fef4579d3040fac34e38213541f 249 PIRSF PIRSF000090 1 249 1.2E-79 T 14-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 RY45_12790 e8ee4fef4579d3040fac34e38213541f 249 SMART SM00893 23 211 3.8E-61 T 14-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RY45_12790 e8ee4fef4579d3040fac34e38213541f 249 Gene3D G3DSA:3.40.50.620 1 247 1.4E-84 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_12790 e8ee4fef4579d3040fac34e38213541f 249 SUPERFAMILY SSF52402 1 243 5.86E-79 T 14-10-2018 RY45_12790 e8ee4fef4579d3040fac34e38213541f 249 Pfam PF01012 Electron transfer flavoprotein domain 30 206 1.7E-43 T 14-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 14-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 SUPERFAMILY SSF48256 6 428 3.27E-169 T 14-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 PIRSF PIRSF001369 38 428 1.9E-171 T 14-10-2018 IPR024176 Citrate synthase, bacterial-type RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 Gene3D G3DSA:1.10.230.10 268 376 5.8E-148 T 14-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 PRINTS PR00143 Citrate synthase signature 165 178 2.0E-55 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 PRINTS PR00143 Citrate synthase signature 241 269 2.0E-55 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 PRINTS PR00143 Citrate synthase signature 359 375 2.0E-55 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 PRINTS PR00143 Citrate synthase signature 379 393 2.0E-55 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 PRINTS PR00143 Citrate synthase signature 296 316 2.0E-55 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 PRINTS PR00143 Citrate synthase signature 219 234 2.0E-55 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 422 3.5E-236 T 14-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 Pfam PF00285 Citrate synthase, C-terminal domain 46 411 9.2E-134 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 Gene3D G3DSA:2.20.28.60 1 50 4.8E-26 T 14-10-2018 RY45_10310 6172fe9f7c097bcfadf74cffcc1c0427 428 Gene3D G3DSA:1.10.580.10 57 411 5.8E-148 T 14-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RY45_21720 16cccf3f070821aa54042a4dccfa9055 453 Gene3D G3DSA:3.40.630.10 29 348 1.9E-128 T 14-10-2018 RY45_21720 16cccf3f070821aa54042a4dccfa9055 453 Gene3D G3DSA:1.10.10.10 369 443 1.3E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21720 16cccf3f070821aa54042a4dccfa9055 453 Pfam PF09940 Domain of unknown function (DUF2172) 77 168 1.5E-39 T 14-10-2018 IPR032610 Domain of unknown function DUF2172 RY45_21720 16cccf3f070821aa54042a4dccfa9055 453 Pfam PF16221 winged helix-turn-helix 370 441 4.3E-25 T 14-10-2018 IPR032622 UCP01524, winged helix-turn-helix domain RY45_21720 16cccf3f070821aa54042a4dccfa9055 453 Pfam PF16254 Domain of unknown function (DUF4910) 25 365 1.5E-93 T 14-10-2018 IPR032589 Domain of unknown function DUF4910 RY45_21720 16cccf3f070821aa54042a4dccfa9055 453 PIRSF PIRSF015244 8 443 1.7E-157 T 14-10-2018 IPR012353 Uncharacterised conserved protein UCP01524, polysaccharide biosynthesis aminopeptidase-like RY45_21720 16cccf3f070821aa54042a4dccfa9055 453 Gene3D G3DSA:3.50.30.90 75 171 1.9E-128 T 14-10-2018 RY45_21720 16cccf3f070821aa54042a4dccfa9055 453 SUPERFAMILY SSF53187 101 364 8.16E-33 T 14-10-2018 RY45_01620 5b29cbbbc1617317b2840c38ceab9da9 216 Gene3D G3DSA:3.40.50.300 4 203 3.5E-56 T 14-10-2018 RY45_01620 5b29cbbbc1617317b2840c38ceab9da9 216 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 12 195 3.9E-73 T 14-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 RY45_01620 5b29cbbbc1617317b2840c38ceab9da9 216 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 16 199 27.125 T 14-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 RY45_01620 5b29cbbbc1617317b2840c38ceab9da9 216 Pfam PF01926 50S ribosome-binding GTPase 30 148 6.2E-19 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_01620 5b29cbbbc1617317b2840c38ceab9da9 216 SUPERFAMILY SSF52540 18 199 2.33E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08510 8b05bf4d61095b7524bc8fb418a18847 240 SUPERFAMILY SSF53335 77 187 5.34E-17 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_08510 8b05bf4d61095b7524bc8fb418a18847 240 Pfam PF08241 Methyltransferase domain 77 125 1.1E-7 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RY45_08510 8b05bf4d61095b7524bc8fb418a18847 240 Gene3D G3DSA:3.40.50.150 15 177 7.2E-15 T 14-10-2018 RY45_22325 d2616cf3e3d1bc5ba049dc46acf58e35 65 SUPERFAMILY SSF47598 20 64 1.65E-14 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RY45_22325 d2616cf3e3d1bc5ba049dc46acf58e35 65 Pfam PF09274 ParG 24 62 9.7E-7 T 14-10-2018 IPR015354 DNA partition complex, ParG RY45_22325 d2616cf3e3d1bc5ba049dc46acf58e35 65 Gene3D G3DSA:1.10.1220.10 19 63 4.2E-10 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RY45_17470 2b67cd86e37e53a8efb410b2c9dbb096 520 SUPERFAMILY SSF48557 8 513 9.42E-167 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 RY45_17470 2b67cd86e37e53a8efb410b2c9dbb096 520 Gene3D G3DSA:1.20.200.10 206 512 5.5E-99 T 14-10-2018 RY45_17470 2b67cd86e37e53a8efb410b2c9dbb096 520 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 146 162 - T 14-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 RY45_17470 2b67cd86e37e53a8efb410b2c9dbb096 520 Pfam PF00221 Aromatic amino acid lyase 16 484 8.2E-158 T 14-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 RY45_17470 2b67cd86e37e53a8efb410b2c9dbb096 520 Gene3D G3DSA:1.10.275.10 8 205 3.0E-55 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal RY45_11875 31b7a2882bb5b177ddd0a88444e8e68c 211 Gene3D G3DSA:3.40.50.880 2 211 1.1E-66 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_11875 31b7a2882bb5b177ddd0a88444e8e68c 211 SUPERFAMILY SSF52317 6 210 6.21E-52 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_11875 31b7a2882bb5b177ddd0a88444e8e68c 211 Pfam PF00117 Glutamine amidotransferase class-I 8 209 2.5E-17 T 14-10-2018 IPR017926 Glutamine amidotransferase RY45_11875 31b7a2882bb5b177ddd0a88444e8e68c 211 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 7 210 3.6E-63 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RY45_11875 31b7a2882bb5b177ddd0a88444e8e68c 211 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 5 211 33.628 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RY45_11875 31b7a2882bb5b177ddd0a88444e8e68c 211 PIRSF PIRSF000495 4 211 8.8E-63 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RY45_03785 b9683e16dc782a5a492bf394167dfd7d 173 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 4 173 23.812 T 14-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RY45_03785 b9683e16dc782a5a492bf394167dfd7d 173 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 5 173 9.9E-57 T 14-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RY45_03785 b9683e16dc782a5a492bf394167dfd7d 173 SUPERFAMILY SSF50447 4 90 3.11E-22 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_03785 b9683e16dc782a5a492bf394167dfd7d 173 Gene3D G3DSA:2.40.30.60 1 91 1.2E-29 T 14-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 RY45_03785 b9683e16dc782a5a492bf394167dfd7d 173 Pfam PF05239 PRC-barrel domain 94 168 2.7E-13 T 14-10-2018 IPR027275 PRC-barrel domain RY45_03785 b9683e16dc782a5a492bf394167dfd7d 173 Gene3D G3DSA:2.30.30.240 92 173 7.7E-34 T 14-10-2018 RY45_03785 b9683e16dc782a5a492bf394167dfd7d 173 Pfam PF01782 RimM N-terminal domain 7 86 2.2E-23 T 14-10-2018 IPR002676 RimM, N-terminal GO:0006364 RY45_03785 b9683e16dc782a5a492bf394167dfd7d 173 SUPERFAMILY SSF50346 97 173 1.51E-20 T 14-10-2018 IPR011033 PRC-barrel-like superfamily RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 SMART SM00382 36 225 4.4E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 SMART SM00382 284 478 6.2E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 Gene3D G3DSA:3.40.50.300 262 510 3.2E-48 T 14-10-2018 RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 Gene3D G3DSA:3.40.50.300 3 254 6.2E-58 T 14-10-2018 RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 SUPERFAMILY SSF52540 273 487 5.11E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 Pfam PF00005 ABC transporter 27 176 1.3E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 Pfam PF00005 ABC transporter 276 429 8.0E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_11315 68f678cde39eaeffb592d32bb62d5069 510 SUPERFAMILY SSF52540 10 237 7.61E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21505 9ffb26e45412aeea213ff7039cef2efa 224 Hamap MF_02088 Probable queuosine precursor transporter. 6 208 15.429 T 14-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 RY45_21505 9ffb26e45412aeea213ff7039cef2efa 224 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 202 8.9E-60 T 14-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 RY45_21505 9ffb26e45412aeea213ff7039cef2efa 224 Pfam PF02592 Putative vitamin uptake transporter 42 198 2.2E-35 T 14-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 RY45_03350 b328ff07d8d75dfec6c50e560f306930 222 Gene3D G3DSA:3.40.50.1000 9 199 3.4E-26 T 14-10-2018 IPR023214 HAD superfamily RY45_03350 b328ff07d8d75dfec6c50e560f306930 222 Pfam PF00702 haloacid dehalogenase-like hydrolase 10 184 3.6E-10 T 14-10-2018 RY45_03350 b328ff07d8d75dfec6c50e560f306930 222 SUPERFAMILY SSF56784 6 217 1.6E-45 T 14-10-2018 IPR036412 HAD-like superfamily RY45_03350 b328ff07d8d75dfec6c50e560f306930 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 72 189 1.1E-13 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_14405 7683ecce6184eae03807453302d020ea 423 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 111 119 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_14405 7683ecce6184eae03807453302d020ea 423 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 209 219 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_14405 7683ecce6184eae03807453302d020ea 423 Pfam PF00483 Nucleotidyl transferase 20 289 2.0E-68 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RY45_14405 7683ecce6184eae03807453302d020ea 423 Gene3D G3DSA:2.160.10.10 299 423 8.2E-36 T 14-10-2018 RY45_14405 7683ecce6184eae03807453302d020ea 423 Gene3D G3DSA:3.90.550.10 4 298 3.2E-91 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_14405 7683ecce6184eae03807453302d020ea 423 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 24 43 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_14405 7683ecce6184eae03807453302d020ea 423 SUPERFAMILY SSF51161 310 409 7.62E-16 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_14405 7683ecce6184eae03807453302d020ea 423 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 15 421 51.681 T 14-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_14405 7683ecce6184eae03807453302d020ea 423 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 19 395 2.6E-154 T 14-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_14405 7683ecce6184eae03807453302d020ea 423 SUPERFAMILY SSF53448 17 375 1.04E-78 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_06830 6dce976689faa21fa0cfcb963458a117 82 Gene3D G3DSA:1.10.1900.30 9 77 8.8E-32 T 14-10-2018 IPR038191 YciN superfamily RY45_06830 6dce976689faa21fa0cfcb963458a117 82 Pfam PF10692 Protein of unknown function (DUF2498) 4 81 2.0E-39 T 14-10-2018 IPR019633 Protein of unknown function DUF2498 RY45_11880 9234611b4c95f530d645ccf2fd5b26b1 247 Pfam PF00977 Histidine biosynthesis protein 1 233 3.3E-75 T 14-10-2018 IPR006062 Histidine biosynthesis GO:0000105 RY45_11880 9234611b4c95f530d645ccf2fd5b26b1 247 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.37 T 14-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 RY45_11880 9234611b4c95f530d645ccf2fd5b26b1 247 Gene3D G3DSA:3.20.20.70 1 246 1.5E-91 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_11880 9234611b4c95f530d645ccf2fd5b26b1 247 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 236 5.8E-79 T 14-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 RY45_11880 9234611b4c95f530d645ccf2fd5b26b1 247 SUPERFAMILY SSF51366 1 242 7.07E-65 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RY45_10120 dc452fd23679de43fd4a64afa454379e 264 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 9 250 1.2E-102 T 14-10-2018 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|KEGG: 00790+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158 RY45_10120 dc452fd23679de43fd4a64afa454379e 264 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 10 227 2.3E-48 T 14-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RY45_10120 dc452fd23679de43fd4a64afa454379e 264 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 208 227 7.5E-9 T 14-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RY45_10120 dc452fd23679de43fd4a64afa454379e 264 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 73 95 7.5E-9 T 14-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RY45_10120 dc452fd23679de43fd4a64afa454379e 264 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 177 195 7.5E-9 T 14-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RY45_10120 dc452fd23679de43fd4a64afa454379e 264 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 116 127 - T 14-10-2018 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 RY45_10120 dc452fd23679de43fd4a64afa454379e 264 Gene3D G3DSA:1.10.800.10 1 263 7.5E-99 T 14-10-2018 IPR036951 Aromatic amino acid hydroxylase superfamily GO:0004497|GO:0005506|GO:0009072|GO:0055114 RY45_10120 dc452fd23679de43fd4a64afa454379e 264 SUPERFAMILY SSF56534 5 246 2.62E-98 T 14-10-2018 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 SUPERFAMILY SSF89000 384 434 9.02E-14 T 14-10-2018 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 Pfam PF08502 LeuA allosteric (dimerisation) domain 418 543 3.6E-22 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 SMART SM00917 418 546 6.4E-25 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 Pfam PF00682 HMGL-like 31 309 8.2E-74 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 SUPERFAMILY SSF110921 456 542 7.59E-21 T 14-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 Gene3D G3DSA:3.20.20.70 9 372 2.9E-149 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 SUPERFAMILY SSF51569 19 326 5.86E-96 T 14-10-2018 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 Gene3D G3DSA:3.30.160.270 373 544 1.1E-44 T 14-10-2018 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 37 53 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 239 252 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 2 547 50.743 T 14-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_14320 b25f9155c625f13f7b651750dcf3b040 552 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 6 544 2.8E-214 T 14-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 453 592 2.0E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 SUPERFAMILY SSF47226 6 128 1.57E-33 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Pfam PF01584 CheW-like domain 599 726 1.4E-23 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Gene3D G3DSA:1.20.120.160 3 141 7.1E-39 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Gene3D G3DSA:2.30.30.40 593 721 2.7E-35 T 14-10-2018 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 SMART SM01231 345 405 1.7E-16 T 14-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 SUPERFAMILY SSF50341 592 725 9.68E-30 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 SMART SM00387 450 593 2.1E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 SMART SM00073 6 103 1.6E-21 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Gene3D G3DSA:3.30.565.10 406 592 1.8E-54 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 547 9.6E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 571 9.6E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 509 9.6E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 577 590 9.6E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Pfam PF01627 Hpt domain 8 99 5.9E-19 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 346 405 5.2E-12 T 14-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Gene3D G3DSA:2.40.50.180 616 680 2.7E-35 T 14-10-2018 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 SMART SM00260 585 725 1.2E-33 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 SUPERFAMILY SSF55874 408 591 1.57E-38 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 Gene3D G3DSA:1.10.287.560 345 405 1.2E-18 T 14-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 RY45_07295 a24e7d3bf034b9e549c8cda0b874c334 732 SUPERFAMILY SSF47384 346 406 2.28E-13 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_02295 4199f580a70e3083916444f9317841c9 346 Gene3D G3DSA:3.90.640.10 189 262 3.9E-130 T 14-10-2018 RY45_02295 4199f580a70e3083916444f9317841c9 346 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 338 6.1E-166 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RY45_02295 4199f580a70e3083916444f9317841c9 346 Gene3D G3DSA:3.30.420.40 14 330 3.9E-130 T 14-10-2018 RY45_02295 4199f580a70e3083916444f9317841c9 346 Gene3D G3DSA:3.30.420.40 157 320 3.9E-130 T 14-10-2018 RY45_02295 4199f580a70e3083916444f9317841c9 346 SUPERFAMILY SSF53067 9 151 1.68E-38 T 14-10-2018 RY45_02295 4199f580a70e3083916444f9317841c9 346 SUPERFAMILY SSF53067 152 338 7.86E-50 T 14-10-2018 RY45_02295 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 71 94 6.9E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RY45_02295 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 51 69 6.9E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RY45_02295 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 6.9E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RY45_02295 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 6.9E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RY45_02295 4199f580a70e3083916444f9317841c9 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 6.9E-65 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RY45_02295 4199f580a70e3083916444f9317841c9 346 Pfam PF06723 MreB/Mbl protein 11 337 1.2E-149 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RY45_19380 deda4c1c994cc26695925a95c872d690 175 Pfam PF08534 Redoxin 49 157 1.7E-12 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 RY45_19380 deda4c1c994cc26695925a95c872d690 175 SUPERFAMILY SSF52833 43 169 2.73E-27 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_19380 deda4c1c994cc26695925a95c872d690 175 Gene3D G3DSA:3.40.30.10 37 171 5.8E-24 T 14-10-2018 RY45_04210 01651dc801c612f1ff0718f5c8e28ba8 410 SUPERFAMILY SSF103473 16 400 1.83E-32 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_04210 01651dc801c612f1ff0718f5c8e28ba8 410 Gene3D G3DSA:1.20.1250.20 17 201 1.3E-18 T 14-10-2018 RY45_04210 01651dc801c612f1ff0718f5c8e28ba8 410 Pfam PF07690 Major Facilitator Superfamily 26 362 1.0E-19 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_04210 01651dc801c612f1ff0718f5c8e28ba8 410 Gene3D G3DSA:1.20.1250.20 221 409 1.4E-8 T 14-10-2018 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 146 1.6E-31 T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 SUPERFAMILY SSF52794 527 623 1.27E-30 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 529 611 1.2E-27 T 14-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 6 131 2.0E-35 T 14-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 SUPERFAMILY SSF55804 1 145 3.27E-34 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 Gene3D G3DSA:3.40.930.10 1 147 6.9E-39 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 Pfam PF02378 Phosphotransferase system, EIIC 190 447 5.1E-15 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 529 618 1.9E-17 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 175 500 1.4E-80 T 14-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 RY45_07555 2fa4ed94a547caee9a38d655a71eb80a 628 Gene3D G3DSA:3.40.50.2300 520 625 3.1E-35 T 14-10-2018 RY45_02335 917bfe820015f9347ed439126305e7bb 482 PIRSF PIRSF004919 16 482 1.5E-142 T 14-10-2018 IPR025502 TldD RY45_02335 917bfe820015f9347ed439126305e7bb 482 SUPERFAMILY SSF111283 21 481 5.49E-135 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 RY45_02335 917bfe820015f9347ed439126305e7bb 482 Pfam PF01523 Putative modulator of DNA gyrase 38 333 8.9E-70 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 RY45_02335 917bfe820015f9347ed439126305e7bb 482 Gene3D G3DSA:3.30.2290.10 7 241 1.4E-18 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal RY45_11900 e106f5f0daf7c66238a8d63567e59b24 257 SUPERFAMILY SSF51366 1 256 5.97E-73 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RY45_11900 e106f5f0daf7c66238a8d63567e59b24 257 Pfam PF00977 Histidine biosynthesis protein 5 239 2.2E-76 T 14-10-2018 IPR006062 Histidine biosynthesis GO:0000105 RY45_11900 e106f5f0daf7c66238a8d63567e59b24 257 Gene3D G3DSA:3.20.20.70 1 257 3.6E-92 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_11900 e106f5f0daf7c66238a8d63567e59b24 257 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 2.4E-109 T 14-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 RY45_11900 e106f5f0daf7c66238a8d63567e59b24 257 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 43.997 T 14-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 RY45_14230 3e4ac436bea9a93855ce507c4d98bd20 253 SUPERFAMILY SSF52540 1 236 2.66E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14230 3e4ac436bea9a93855ce507c4d98bd20 253 SMART SM00382 26 217 1.6E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_14230 3e4ac436bea9a93855ce507c4d98bd20 253 Gene3D G3DSA:3.40.50.300 1 251 3.0E-72 T 14-10-2018 RY45_14230 3e4ac436bea9a93855ce507c4d98bd20 253 PIRSF PIRSF039085 1 245 1.3E-97 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RY45_14230 3e4ac436bea9a93855ce507c4d98bd20 253 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_14230 3e4ac436bea9a93855ce507c4d98bd20 253 Pfam PF00005 ABC transporter 17 169 3.0E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_22280 c96d3d09f79a390e2d1fcacb156bf9d5 336 Pfam PF01076 Plasmid recombination enzyme 1 185 2.7E-38 T 14-10-2018 IPR001668 Plasmid recombination enzyme GO:0003677|GO:0005727|GO:0006310 RY45_22280 c96d3d09f79a390e2d1fcacb156bf9d5 336 Gene3D G3DSA:3.30.930.30 3 178 3.3E-48 T 14-10-2018 RY45_09060 20879bdaccbdad2340205e20dd63c8a8 357 Gene3D G3DSA:3.20.20.70 4 349 5.0E-152 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_09060 20879bdaccbdad2340205e20dd63c8a8 357 Pfam PF00793 DAHP synthetase I family 42 340 2.6E-99 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_09060 20879bdaccbdad2340205e20dd63c8a8 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 11 347 4.4E-155 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RY45_09060 20879bdaccbdad2340205e20dd63c8a8 357 PIRSF PIRSF001361 1 353 3.4E-157 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RY45_09060 20879bdaccbdad2340205e20dd63c8a8 357 SUPERFAMILY SSF51569 8 346 5.68E-135 T 14-10-2018 RY45_21825 a40a72943a7afc4f2857042758faf488 314 Gene3D G3DSA:3.20.10.10 143 294 7.6E-102 T 14-10-2018 RY45_21825 a40a72943a7afc4f2857042758faf488 314 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 15 312 2.9E-135 T 14-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 RY45_21825 a40a72943a7afc4f2857042758faf488 314 SUPERFAMILY SSF56752 12 313 1.57E-102 T 14-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RY45_21825 a40a72943a7afc4f2857042758faf488 314 Gene3D G3DSA:3.30.470.10 15 132 7.6E-102 T 14-10-2018 RY45_21825 a40a72943a7afc4f2857042758faf488 314 Pfam PF01063 Amino-transferase class IV 41 273 1.5E-50 T 14-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RY45_21825 a40a72943a7afc4f2857042758faf488 314 ProSitePatterns PS00770 Aminotransferases class-IV signature. 199 228 - T 14-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 RY45_07125 80e658ac7764b9189b315ddf105d94ff 246 Gene3D G3DSA:3.20.20.140 2 246 1.5E-63 T 14-10-2018 RY45_07125 80e658ac7764b9189b315ddf105d94ff 246 SMART SM00481 5 79 9.4E-15 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RY45_07125 80e658ac7764b9189b315ddf105d94ff 246 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 2 244 51.59 T 14-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 RY45_07125 80e658ac7764b9189b315ddf105d94ff 246 SUPERFAMILY SSF89550 4 242 1.18E-60 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RY45_18515 441636e6a185f2f5b6e293109ccca925 158 Gene3D G3DSA:3.30.70.920 57 142 3.9E-28 T 14-10-2018 RY45_18515 441636e6a185f2f5b6e293109ccca925 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 5.3E-21 T 14-10-2018 RY45_18515 441636e6a185f2f5b6e293109ccca925 158 Gene3D G3DSA:1.10.10.10 5 56 1.1E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_18515 441636e6a185f2f5b6e293109ccca925 158 SUPERFAMILY SSF54909 65 154 6.17E-23 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_18515 441636e6a185f2f5b6e293109ccca925 158 SMART SM00344 4 114 3.6E-40 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RY45_18515 441636e6a185f2f5b6e293109ccca925 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 3.2E-18 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_18515 441636e6a185f2f5b6e293109ccca925 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 3.2E-18 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_18515 441636e6a185f2f5b6e293109ccca925 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 3.2E-18 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_18515 441636e6a185f2f5b6e293109ccca925 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 14-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RY45_18515 441636e6a185f2f5b6e293109ccca925 158 Pfam PF01037 Lrp/AsnC ligand binding domain 70 144 1.5E-25 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RY45_18515 441636e6a185f2f5b6e293109ccca925 158 SUPERFAMILY SSF46785 2 92 8.67E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_11815 4cc5d6787fe118efcf88a1791d31d47b 252 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 22 247 9.1E-26 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_11815 4cc5d6787fe118efcf88a1791d31d47b 252 SMART SM00062 19 251 1.1E-6 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_11815 4cc5d6787fe118efcf88a1791d31d47b 252 Gene3D G3DSA:3.40.190.10 26 247 7.4E-28 T 14-10-2018 RY45_11815 4cc5d6787fe118efcf88a1791d31d47b 252 Gene3D G3DSA:3.40.190.10 103 207 7.4E-28 T 14-10-2018 RY45_11815 4cc5d6787fe118efcf88a1791d31d47b 252 SUPERFAMILY SSF53850 20 247 1.09E-35 T 14-10-2018 RY45_20025 71d22d6a132bfe86df44cb274f87c2ea 285 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 31 284 3.2E-93 T 14-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 RY45_20025 71d22d6a132bfe86df44cb274f87c2ea 285 PIRSF PIRSF006250 1 285 3.1E-102 T 14-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 RY45_20025 71d22d6a132bfe86df44cb274f87c2ea 285 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 31 117 3.7E-24 T 14-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 RY45_20025 71d22d6a132bfe86df44cb274f87c2ea 285 SUPERFAMILY SSF51690 119 284 4.71E-60 T 14-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RY45_20025 71d22d6a132bfe86df44cb274f87c2ea 285 Gene3D G3DSA:3.20.20.70 128 274 5.8E-120 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_20025 71d22d6a132bfe86df44cb274f87c2ea 285 Gene3D G3DSA:3.90.1170.20 4 283 5.8E-120 T 14-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 RY45_20025 71d22d6a132bfe86df44cb274f87c2ea 285 SUPERFAMILY SSF54675 1 118 5.59E-31 T 14-10-2018 RY45_20025 71d22d6a132bfe86df44cb274f87c2ea 285 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 119 283 2.7E-59 T 14-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 RY45_07460 d976cdacfdf8ca6bafa5a3b74f1ce629 155 PRINTS PR00502 NUDIX hydrolase family signature 36 50 3.1E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_07460 d976cdacfdf8ca6bafa5a3b74f1ce629 155 PRINTS PR00502 NUDIX hydrolase family signature 50 65 3.1E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_07460 d976cdacfdf8ca6bafa5a3b74f1ce629 155 Pfam PF00293 NUDIX domain 20 121 1.7E-15 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_07460 d976cdacfdf8ca6bafa5a3b74f1ce629 155 SUPERFAMILY SSF55811 4 150 3.79E-29 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_07460 d976cdacfdf8ca6bafa5a3b74f1ce629 155 ProSitePatterns PS00893 Nudix box signature. 41 62 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_07460 d976cdacfdf8ca6bafa5a3b74f1ce629 155 Gene3D G3DSA:3.90.79.10 7 154 1.6E-35 T 14-10-2018 RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 Gene3D G3DSA:4.10.320.10 110 150 1.8E-11 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 Pfam PF02817 e3 binding domain 112 146 2.5E-9 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 Gene3D G3DSA:2.40.50.100 3 78 6.1E-22 T 14-10-2018 RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 Pfam PF00364 Biotin-requiring enzyme 4 74 1.8E-19 T 14-10-2018 IPR000089 Biotin/lipoyl attachment RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 SUPERFAMILY SSF47005 105 149 3.14E-9 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 SUPERFAMILY SSF52777 160 364 2.36E-51 T 14-10-2018 RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 Gene3D G3DSA:3.30.559.10 161 366 2.3E-47 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 159 365 2.7E-48 T 14-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RY45_14940 8a3c47c806b43ef30b40efd6a1ab1b85 366 SUPERFAMILY SSF51230 3 85 1.57E-23 T 14-10-2018 IPR011053 Single hybrid motif RY45_03010 268ccac3dd89b0a916116839017966c4 303 Pfam PF00561 alpha/beta hydrolase fold 27 229 9.7E-17 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_03010 268ccac3dd89b0a916116839017966c4 303 SUPERFAMILY SSF53474 22 300 5.87E-48 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_03010 268ccac3dd89b0a916116839017966c4 303 Gene3D G3DSA:3.40.50.1820 20 303 5.5E-91 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 117 241 6.2E-45 T 14-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 Pfam PF01266 FAD dependent oxidoreductase 265 631 1.2E-53 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 Gene3D G3DSA:3.30.9.10 348 569 1.1E-140 T 14-10-2018 RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 SUPERFAMILY SSF54373 477 549 1.27E-5 T 14-10-2018 RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 656 29.246 T 14-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 SUPERFAMILY SSF51905 265 658 1.1E-38 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 265 661 9.1E-157 T 14-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 Gene3D G3DSA:3.40.50.150 9 251 1.2E-104 T 14-10-2018 RY45_10290 efbb65af5608934c4d566cd5fb4a594a 665 Gene3D G3DSA:3.50.50.60 264 658 1.1E-140 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_06330 85367701d2c1ea44e443b27a34ca6abe 450 SMART SM00228 211 280 5.3E-6 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_06330 85367701d2c1ea44e443b27a34ca6abe 450 SMART SM00228 116 186 0.15 T 14-10-2018 IPR001478 PDZ domain GO:0005515 RY45_06330 85367701d2c1ea44e443b27a34ca6abe 450 SUPERFAMILY SSF50156 197 290 8.33E-15 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 RY45_06330 85367701d2c1ea44e443b27a34ca6abe 450 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 4 450 1.7E-138 T 14-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RY45_06330 85367701d2c1ea44e443b27a34ca6abe 450 Pfam PF02163 Peptidase family M50 10 438 5.2E-86 T 14-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 RY45_06330 85367701d2c1ea44e443b27a34ca6abe 450 Gene3D G3DSA:2.30.42.10 221 309 2.2E-20 T 14-10-2018 RY45_06330 85367701d2c1ea44e443b27a34ca6abe 450 Gene3D G3DSA:2.30.42.10 126 219 1.2E-27 T 14-10-2018 RY45_06330 85367701d2c1ea44e443b27a34ca6abe 450 SUPERFAMILY SSF50156 89 189 2.02E-12 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 RY45_04910 1f6a10d5bb547f6a909ab28c81db4ad6 361 Gene3D G3DSA:3.40.718.10 1 361 1.1E-156 T 14-10-2018 RY45_04910 1f6a10d5bb547f6a909ab28c81db4ad6 361 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 357 5.2E-133 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RY45_04910 1f6a10d5bb547f6a909ab28c81db4ad6 361 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 361 50.59 T 14-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 RY45_04910 1f6a10d5bb547f6a909ab28c81db4ad6 361 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 246 265 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RY45_04910 1f6a10d5bb547f6a909ab28c81db4ad6 361 SMART SM01329 5 357 1.1E-199 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RY45_04910 1f6a10d5bb547f6a909ab28c81db4ad6 361 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 5 354 7.8E-164 T 14-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 RY45_04910 1f6a10d5bb547f6a909ab28c81db4ad6 361 SUPERFAMILY SSF53659 2 361 3.26E-122 T 14-10-2018 RY45_01380 50f03e218f879aa3204ebc06bce3d480 332 Gene3D G3DSA:3.40.50.2300 27 283 4.0E-96 T 14-10-2018 RY45_01380 50f03e218f879aa3204ebc06bce3d480 332 Gene3D G3DSA:3.40.50.2300 127 319 4.0E-96 T 14-10-2018 RY45_01380 50f03e218f879aa3204ebc06bce3d480 332 SUPERFAMILY SSF53822 44 268 1.83E-16 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_01380 50f03e218f879aa3204ebc06bce3d480 332 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 31 322 1.9E-63 T 14-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 RY45_19895 21f53783442f4528276b56720b428675 172 SUPERFAMILY SSF141452 3 168 3.4E-38 T 14-10-2018 IPR036624 Hcp1-like superfamily RY45_19895 21f53783442f4528276b56720b428675 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 4.0E-63 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp RY45_19895 21f53783442f4528276b56720b428675 172 Gene3D G3DSA:2.30.110.20 2 172 4.2E-67 T 14-10-2018 IPR036624 Hcp1-like superfamily RY45_19895 21f53783442f4528276b56720b428675 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 5.4E-31 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp RY45_09925 21f53783442f4528276b56720b428675 172 SUPERFAMILY SSF141452 3 168 3.4E-38 T 14-10-2018 IPR036624 Hcp1-like superfamily RY45_09925 21f53783442f4528276b56720b428675 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 4.0E-63 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp RY45_09925 21f53783442f4528276b56720b428675 172 Gene3D G3DSA:2.30.110.20 2 172 4.2E-67 T 14-10-2018 IPR036624 Hcp1-like superfamily RY45_09925 21f53783442f4528276b56720b428675 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 5.4E-31 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp RY45_03345 3be9d039345712d9d05c467bcaa75037 422 Pfam PF01479 S4 domain 358 391 1.3E-5 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 SUPERFAMILY SSF52374 5 327 3.34E-96 T 14-10-2018 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 SUPERFAMILY SSF55174 326 420 3.01E-15 T 14-10-2018 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 Pfam PF00579 tRNA synthetases class I (W and Y) 33 327 1.4E-80 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 6 420 4.8E-119 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 166 181 1.4E-30 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 45 67 1.4E-30 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 220 232 1.4E-30 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 187 209 1.4E-30 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 Gene3D G3DSA:1.10.240.10 227 329 5.3E-35 T 14-10-2018 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 420 43.228 T 14-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 51 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 Gene3D G3DSA:3.10.290.10 330 421 2.1E-23 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_03345 3be9d039345712d9d05c467bcaa75037 422 Gene3D G3DSA:3.40.50.620 2 226 1.3E-84 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_11060 77929fca7607fab80e596382a29c2438 132 SUPERFAMILY SSF51316 1 122 7.22E-30 T 14-10-2018 IPR011057 Mss4-like superfamily RY45_11060 77929fca7607fab80e596382a29c2438 132 Gene3D G3DSA:2.170.150.70 1 109 6.0E-11 T 14-10-2018 RY45_11060 77929fca7607fab80e596382a29c2438 132 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 22 103 1.2E-13 T 14-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 RY45_04530 7d955c829f787f6e3263b4e49ae656c2 399 PIRSF PIRSF038994 4 378 4.4E-110 T 14-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 RY45_04530 7d955c829f787f6e3263b4e49ae656c2 399 Gene3D G3DSA:2.30.40.10 11 373 8.0E-114 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_04530 7d955c829f787f6e3263b4e49ae656c2 399 Pfam PF01979 Amidohydrolase family 47 372 1.6E-25 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_04530 7d955c829f787f6e3263b4e49ae656c2 399 Gene3D G3DSA:3.20.20.140 50 346 8.0E-114 T 14-10-2018 RY45_04530 7d955c829f787f6e3263b4e49ae656c2 399 SUPERFAMILY SSF51556 51 346 1.2E-93 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_04530 7d955c829f787f6e3263b4e49ae656c2 399 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 45 366 1.8E-82 T 14-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 RY45_04530 7d955c829f787f6e3263b4e49ae656c2 399 SUPERFAMILY SSF51338 5 375 2.59E-5 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_05080 9ddc894f1b7cfdffe2f2c191a179a3a4 252 SUPERFAMILY SSF53067 1 245 5.5E-36 T 14-10-2018 RY45_05080 9ddc894f1b7cfdffe2f2c191a179a3a4 252 Gene3D G3DSA:3.30.420.40 1 104 4.1E-24 T 14-10-2018 RY45_05080 9ddc894f1b7cfdffe2f2c191a179a3a4 252 Pfam PF00480 ROK family 4 166 3.7E-20 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RY45_05080 9ddc894f1b7cfdffe2f2c191a179a3a4 252 Gene3D G3DSA:3.30.420.40 105 246 5.5E-34 T 14-10-2018 RY45_20940 65492c3f2a654cfdc6a09b86f0bd0eb3 209 Pfam PF02734 DAK2 domain 32 204 6.4E-56 T 14-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RY45_20940 65492c3f2a654cfdc6a09b86f0bd0eb3 209 SMART SM01120 31 205 2.6E-80 T 14-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RY45_20940 65492c3f2a654cfdc6a09b86f0bd0eb3 209 SUPERFAMILY SSF101473 3 205 9.94E-59 T 14-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RY45_20940 65492c3f2a654cfdc6a09b86f0bd0eb3 209 Gene3D G3DSA:1.25.40.340 1 208 2.9E-73 T 14-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RY45_20940 65492c3f2a654cfdc6a09b86f0bd0eb3 209 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 8 204 8.6E-76 T 14-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 Gene3D G3DSA:1.10.8.410 249 300 6.0E-24 T 14-10-2018 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 Gene3D G3DSA:1.20.58.1830 5 33 1.9E-78 T 14-10-2018 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 Gene3D G3DSA:2.170.280.10 177 190 1.9E-78 T 14-10-2018 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 Pfam PF00700 Bacterial flagellin C-terminal helical region 217 300 3.1E-25 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 SUPERFAMILY SSF64518 1 300 1.96E-96 T 14-10-2018 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 Gene3D G3DSA:1.20.1330.10 45 176 1.9E-78 T 14-10-2018 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 PRINTS PR00207 Flagellin signature 37 54 1.5E-25 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 PRINTS PR00207 Flagellin signature 76 95 1.5E-25 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 PRINTS PR00207 Flagellin signature 111 134 1.5E-25 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RY45_09285 3a83d9ae654767e9d76363a4fbd2656a 301 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.5E-44 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 SUPERFAMILY SSF55021 799 848 1.37E-8 T 14-10-2018 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 SMART SM00471 448 595 1.7E-6 T 14-10-2018 IPR003607 HD/PDEase domain RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 SUPERFAMILY SSF109604 420 617 1.6E-13 T 14-10-2018 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 Pfam PF01966 HD domain 486 585 1.0E-11 T 14-10-2018 IPR006674 HD domain RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 881 338.355 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 Gene3D G3DSA:1.10.3210.10 440 588 1.5E-6 T 14-10-2018 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 Pfam PF01909 Nucleotidyltransferase domain 59 116 4.9E-7 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 PIRSF PIRSF006288 11 877 0.0 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 SUPERFAMILY SSF55021 690 764 4.96E-8 T 14-10-2018 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 Pfam PF08335 GlnD PII-uridylyltransferase 177 316 1.1E-36 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 33 870 0.0 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 SUPERFAMILY SSF81593 199 312 6.12E-10 T 14-10-2018 RY45_06285 2b2187375e60ffd921b5a3db79c53b97 884 SUPERFAMILY SSF81301 38 168 5.06E-22 T 14-10-2018 RY45_16930 7379a0409a4418a3125f33507a4c5b06 324 PIRSF PIRSF037196 2 324 1.6E-138 T 14-10-2018 IPR017133 Pyoverdine chromophore biosynthesis protein PvcA RY45_16930 7379a0409a4418a3125f33507a4c5b06 324 Pfam PF05141 Pyoverdine/dityrosine biosynthesis protein 47 305 5.7E-79 T 14-10-2018 IPR007817 Pyoverdine biosynthesis RY45_16930 7379a0409a4418a3125f33507a4c5b06 324 Gene3D G3DSA:3.30.60.140 281 324 1.7E-9 T 14-10-2018 RY45_13670 f489fab5a0c123c840830555707c01dd 852 Pfam PF10531 SLBB domain 296 344 5.2E-8 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_13670 f489fab5a0c123c840830555707c01dd 852 Gene3D G3DSA:3.40.50.11540 145 289 3.6E-7 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_13670 f489fab5a0c123c840830555707c01dd 852 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 446 2.9E-175 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 RY45_13670 f489fab5a0c123c840830555707c01dd 852 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 116 5.9E-31 T 14-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain RY45_13670 f489fab5a0c123c840830555707c01dd 852 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 786 249.935 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 RY45_13670 f489fab5a0c123c840830555707c01dd 852 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 140 283 4.7E-42 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_13670 f489fab5a0c123c840830555707c01dd 852 Pfam PF12838 4Fe-4S dicluster domain 376 429 3.7E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13670 f489fab5a0c123c840830555707c01dd 852 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13670 f489fab5a0c123c840830555707c01dd 852 Gene3D G3DSA:1.10.1060.10 372 444 4.6E-11 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_13670 f489fab5a0c123c840830555707c01dd 852 SUPERFAMILY SSF142019 96 303 7.98E-53 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_13670 f489fab5a0c123c840830555707c01dd 852 SUPERFAMILY SSF46548 335 445 4.71E-20 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_04620 fa6cab7ca54893e71254968c454ed7b0 158 Gene3D G3DSA:3.30.1330.50 1 158 3.7E-68 T 14-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RY45_04620 fa6cab7ca54893e71254968c454ed7b0 158 Pfam PF02542 YgbB family 2 155 9.2E-63 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RY45_04620 fa6cab7ca54893e71254968c454ed7b0 158 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 35.375 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RY45_04620 fa6cab7ca54893e71254968c454ed7b0 158 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 157 1.3E-67 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RY45_04620 fa6cab7ca54893e71254968c454ed7b0 158 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 14-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RY45_04620 fa6cab7ca54893e71254968c454ed7b0 158 SUPERFAMILY SSF69765 1 157 6.93E-64 T 14-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 Pfam PF00263 Bacterial type II and III secretion system protein 571 729 6.2E-47 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 PRINTS PR00811 Bacterial general secretion pathway protein D signature 477 487 1.1E-20 T 14-10-2018 IPR001775 GspD/PilQ family RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 PRINTS PR00811 Bacterial general secretion pathway protein D signature 602 612 1.1E-20 T 14-10-2018 IPR001775 GspD/PilQ family RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 PRINTS PR00811 Bacterial general secretion pathway protein D signature 694 712 1.1E-20 T 14-10-2018 IPR001775 GspD/PilQ family RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 PRINTS PR00811 Bacterial general secretion pathway protein D signature 567 591 1.1E-20 T 14-10-2018 IPR001775 GspD/PilQ family RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 PRINTS PR00811 Bacterial general secretion pathway protein D signature 717 731 1.1E-20 T 14-10-2018 IPR001775 GspD/PilQ family RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 Gene3D G3DSA:3.30.1370.120 387 478 2.0E-24 T 14-10-2018 IPR038591 NolW-like superfamily RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 Gene3D G3DSA:2.60.40.3470 182 304 3.8E-23 T 14-10-2018 RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 Pfam PF03958 Bacterial type II/III secretion system short domain 413 477 1.5E-10 T 14-10-2018 IPR005644 NolW-like RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 314 729 6.4E-160 T 14-10-2018 IPR013355 Type IV pilus secretin PilQ RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 SMART SM00965 339 387 3.2E-8 T 14-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RY45_16455 c91cc067e8621ce1833a4e9193d987ed 733 Gene3D G3DSA:3.55.50.30 305 386 2.0E-8 T 14-10-2018 RY45_17430 bb900dfa6be4c2151dc9a0d4ca652a88 408 Gene3D G3DSA:3.40.47.10 260 408 3.6E-47 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17430 bb900dfa6be4c2151dc9a0d4ca652a88 408 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site RY45_17430 bb900dfa6be4c2151dc9a0d4ca652a88 408 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 246 4.8E-42 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_17430 bb900dfa6be4c2151dc9a0d4ca652a88 408 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 363 2.4E-29 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RY45_17430 bb900dfa6be4c2151dc9a0d4ca652a88 408 Gene3D G3DSA:3.40.47.10 1 254 4.9E-59 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17430 bb900dfa6be4c2151dc9a0d4ca652a88 408 SUPERFAMILY SSF53901 215 407 2.8E-61 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17430 bb900dfa6be4c2151dc9a0d4ca652a88 408 SUPERFAMILY SSF53901 1 251 1.39E-57 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17430 bb900dfa6be4c2151dc9a0d4ca652a88 408 SMART SM00825 Beta-ketoacyl synthase 4 407 4.7E-12 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 Pfam PF01546 Peptidase family M20/M25/M40 73 478 7.8E-24 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 SUPERFAMILY SSF53187 12 480 1.53E-62 T 14-10-2018 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 480 5.1E-179 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 Gene3D G3DSA:3.40.630.10 374 483 5.1E-23 T 14-10-2018 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 Gene3D G3DSA:3.40.630.10 1 249 1.1E-62 T 14-10-2018 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 361 379 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 205 222 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 448 470 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 249 268 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 426 442 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 8.1E-82 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 Pfam PF07687 Peptidase dimerisation domain 208 287 4.8E-6 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain RY45_17640 c585fd94cf1bb71fa1c580663e294fa3 483 PIRSF PIRSF016599 1 483 1.6E-204 T 14-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RY45_21640 227aa6824b9edba44aaad9da20bd2b4c 774 Pfam PF00391 PEP-utilising enzyme, mobile domain 698 766 4.2E-12 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RY45_21640 227aa6824b9edba44aaad9da20bd2b4c 774 Gene3D G3DSA:3.50.30.10 673 772 1.2E-9 T 14-10-2018 RY45_21640 227aa6824b9edba44aaad9da20bd2b4c 774 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 44 129 1.9E-5 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RY45_21640 227aa6824b9edba44aaad9da20bd2b4c 774 SUPERFAMILY SSF52009 692 765 9.42E-15 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RY45_21640 227aa6824b9edba44aaad9da20bd2b4c 774 Gene3D G3DSA:3.30.470.20 112 213 1.1E-5 T 14-10-2018 RY45_21640 227aa6824b9edba44aaad9da20bd2b4c 774 SUPERFAMILY SSF56059 49 219 2.59E-12 T 14-10-2018 RY45_14125 185d9f9053d282587e602fa057f72472 624 Pfam PF01483 Proprotein convertase P-domain 496 587 2.9E-18 T 14-10-2018 IPR002884 P domain GO:0004252|GO:0006508 RY45_14125 185d9f9053d282587e602fa057f72472 624 SUPERFAMILY SSF49785 456 621 7.65E-26 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily RY45_14125 185d9f9053d282587e602fa057f72472 624 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 358 368 - T 14-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RY45_14125 185d9f9053d282587e602fa057f72472 624 PRINTS PR00723 Subtilisin serine protease family (S8) signature 357 373 4.3E-15 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related RY45_14125 185d9f9053d282587e602fa057f72472 624 PRINTS PR00723 Subtilisin serine protease family (S8) signature 135 148 4.3E-15 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related RY45_14125 185d9f9053d282587e602fa057f72472 624 PRINTS PR00723 Subtilisin serine protease family (S8) signature 93 112 4.3E-15 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related RY45_14125 185d9f9053d282587e602fa057f72472 624 Pfam PF00082 Subtilase family 93 407 4.6E-32 T 14-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RY45_14125 185d9f9053d282587e602fa057f72472 624 Gene3D G3DSA:2.60.120.260 456 624 2.7E-61 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily RY45_14125 185d9f9053d282587e602fa057f72472 624 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 139 149 - T 14-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RY45_14125 185d9f9053d282587e602fa057f72472 624 SUPERFAMILY SSF52743 76 454 4.45E-59 T 14-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RY45_14125 185d9f9053d282587e602fa057f72472 624 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 98 109 - T 14-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RY45_14125 185d9f9053d282587e602fa057f72472 624 Gene3D G3DSA:3.40.50.200 47 454 3.3E-120 T 14-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RY45_05820 35eaae569484f0a35e87c41148c5fbad 384 Pfam PF16538 Flagellar assembly protein T, C-terminal domain 310 382 5.2E-21 T 14-10-2018 IPR032388 Flagellar assembly protein T, C-terminal RY45_05820 35eaae569484f0a35e87c41148c5fbad 384 Gene3D G3DSA:3.30.1660.40 20 108 8.1E-17 T 14-10-2018 IPR038180 FlgT, N-terminal domain superfamily RY45_05820 35eaae569484f0a35e87c41148c5fbad 384 Pfam PF16548 Flagellar assembly protein T, N-terminal domain 20 105 2.4E-21 T 14-10-2018 IPR032370 Flagellar assembly protein T, N-terminal RY45_05820 35eaae569484f0a35e87c41148c5fbad 384 Gene3D G3DSA:3.40.50.10610 110 298 2.8E-44 T 14-10-2018 RY45_05820 35eaae569484f0a35e87c41148c5fbad 384 Pfam PF16539 Flagellar assembly protein T, middle domain 110 263 4.7E-42 T 14-10-2018 IPR032386 Flagellar assembly protein T, middle domain RY45_05820 35eaae569484f0a35e87c41148c5fbad 384 Gene3D G3DSA:2.40.10.410 299 384 7.6E-17 T 14-10-2018 IPR038165 FlgT, C-terminal domain superfamily RY45_21060 44ab1641e78591b608e2b7b829a41576 233 SUPERFAMILY SSF56808 6 225 6.41E-81 T 14-10-2018 IPR023674 Ribosomal protein L1-like RY45_21060 44ab1641e78591b608e2b7b829a41576 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.823 T 14-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RY45_21060 44ab1641e78591b608e2b7b829a41576 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 14-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_21060 44ab1641e78591b608e2b7b829a41576 233 Gene3D G3DSA:3.30.190.20 21 225 3.9E-79 T 14-10-2018 RY45_21060 44ab1641e78591b608e2b7b829a41576 233 PIRSF PIRSF002155 1 227 3.1E-77 T 14-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_21060 44ab1641e78591b608e2b7b829a41576 233 Gene3D G3DSA:3.40.50.790 68 159 3.9E-79 T 14-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RY45_21060 44ab1641e78591b608e2b7b829a41576 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 5.9E-106 T 14-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RY45_21060 44ab1641e78591b608e2b7b829a41576 233 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.5E-49 T 14-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RY45_06065 9671565b0d1413fd8a66bc09aa1553e6 160 SUPERFAMILY SSF89963 2 86 1.28E-29 T 14-10-2018 IPR036183 YajQ-like superfamily RY45_06065 9671565b0d1413fd8a66bc09aa1553e6 160 SUPERFAMILY SSF89963 88 160 2.88E-30 T 14-10-2018 IPR036183 YajQ-like superfamily RY45_06065 9671565b0d1413fd8a66bc09aa1553e6 160 Gene3D G3DSA:3.30.70.860 95 160 1.1E-31 T 14-10-2018 IPR035571 UPF0234-like, C-terminal RY45_06065 9671565b0d1413fd8a66bc09aa1553e6 160 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 160 29.694 T 14-10-2018 IPR007551 Protein of unknown function DUF520 RY45_06065 9671565b0d1413fd8a66bc09aa1553e6 160 Pfam PF04461 Protein of unknown function (DUF520) 2 159 2.4E-64 T 14-10-2018 IPR007551 Protein of unknown function DUF520 RY45_06065 9671565b0d1413fd8a66bc09aa1553e6 160 Gene3D G3DSA:3.30.70.990 9 94 3.6E-27 T 14-10-2018 IPR035570 UPF0234, N-terminal RY45_06890 b74e9c477c07191515fdf8a4c602ef7e 349 Gene3D G3DSA:2.40.420.20 273 341 6.4E-70 T 14-10-2018 RY45_06890 b74e9c477c07191515fdf8a4c602ef7e 349 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 262 2.1E-29 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_06890 b74e9c477c07191515fdf8a4c602ef7e 349 Gene3D G3DSA:1.10.287.470 97 156 6.4E-70 T 14-10-2018 RY45_06890 b74e9c477c07191515fdf8a4c602ef7e 349 Gene3D G3DSA:2.40.30.170 51 272 6.4E-70 T 14-10-2018 RY45_06890 b74e9c477c07191515fdf8a4c602ef7e 349 Gene3D G3DSA:2.40.50.100 62 190 6.4E-70 T 14-10-2018 RY45_06890 b74e9c477c07191515fdf8a4c602ef7e 349 SUPERFAMILY SSF111369 54 268 4.32E-38 T 14-10-2018 RY45_06890 b74e9c477c07191515fdf8a4c602ef7e 349 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 341 7.6E-75 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_13560 70783d207befceb8cd57f02c3fa5a50e 539 PIRSF PIRSF002741 1 539 9.6E-119 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_13560 70783d207befceb8cd57f02c3fa5a50e 539 Gene3D G3DSA:3.40.190.10 41 521 1.6E-195 T 14-10-2018 RY45_13560 70783d207befceb8cd57f02c3fa5a50e 539 Gene3D G3DSA:3.10.105.10 295 509 1.6E-195 T 14-10-2018 RY45_13560 70783d207befceb8cd57f02c3fa5a50e 539 Gene3D G3DSA:3.90.76.10 70 193 1.6E-195 T 14-10-2018 RY45_13560 70783d207befceb8cd57f02c3fa5a50e 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 459 3.0E-90 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_13560 70783d207befceb8cd57f02c3fa5a50e 539 SUPERFAMILY SSF53850 38 535 3.21E-152 T 14-10-2018 RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 Pfam PF08334 Type II secretion system (T2SS), protein G 31 137 4.2E-39 T 14-10-2018 IPR013545 Type II secretion system protein G RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 Gene3D G3DSA:3.30.700.10 22 137 1.4E-39 T 14-10-2018 RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 1.3E-22 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 1.3E-22 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 SUPERFAMILY SSF54523 34 139 6.28E-39 T 14-10-2018 RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 7 138 4.6E-58 T 14-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 4.2E-9 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03300 75ee63f26efc81e327a5835ac9bbfe78 143 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 1.5E-10 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_14610 5eb6e052c6ccd19b592703ea8ca59fed 502 Gene3D G3DSA:3.40.50.300 6 114 1.6E-8 T 14-10-2018 RY45_14610 5eb6e052c6ccd19b592703ea8ca59fed 502 SUPERFAMILY SSF52540 11 382 3.17E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14610 5eb6e052c6ccd19b592703ea8ca59fed 502 Pfam PF05872 Bacterial protein of unknown function (DUF853) 8 500 4.1E-230 T 14-10-2018 IPR033186 Helicase HerA-like C-terminal RY45_14610 5eb6e052c6ccd19b592703ea8ca59fed 502 Gene3D G3DSA:3.40.50.300 200 376 9.0E-21 T 14-10-2018 RY45_00900 cc72af38158cfd32a94ce58a814b4e55 118 SUPERFAMILY SSF69635 5 115 2.94E-39 T 14-10-2018 RY45_00900 cc72af38158cfd32a94ce58a814b4e55 118 Pfam PF05932 Tir chaperone protein (CesT) family 8 113 1.5E-19 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 RY45_00900 cc72af38158cfd32a94ce58a814b4e55 118 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 97 115 1.8E-36 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 RY45_00900 cc72af38158cfd32a94ce58a814b4e55 118 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 5 28 1.8E-36 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 RY45_00900 cc72af38158cfd32a94ce58a814b4e55 118 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 79 97 1.8E-36 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 RY45_00900 cc72af38158cfd32a94ce58a814b4e55 118 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 30 51 1.8E-36 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 RY45_00900 cc72af38158cfd32a94ce58a814b4e55 118 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 60 76 1.8E-36 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 RY45_00900 cc72af38158cfd32a94ce58a814b4e55 118 Gene3D G3DSA:3.30.1460.10 1 115 8.6E-40 T 14-10-2018 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 Pfam PF01235 Sodium:alanine symporter family 50 459 1.0E-153 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 PRINTS PR00175 Sodium/alanine symporter signature 295 313 3.7E-57 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 PRINTS PR00175 Sodium/alanine symporter signature 86 108 3.7E-57 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 PRINTS PR00175 Sodium/alanine symporter signature 353 375 3.7E-57 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 PRINTS PR00175 Sodium/alanine symporter signature 204 223 3.7E-57 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 PRINTS PR00175 Sodium/alanine symporter signature 176 194 3.7E-57 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 PRINTS PR00175 Sodium/alanine symporter signature 416 436 3.7E-57 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 86 101 - T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_12540 90b05d2328d77cd8dd61a921308bbeb9 499 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 447 1.7E-144 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_01330 f2a22f8863ccff153c125ba40112168e 478 PIRSF PIRSF006060 1 472 2.8E-40 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_01330 f2a22f8863ccff153c125ba40112168e 478 Pfam PF13520 Amino acid permease 11 431 6.5E-32 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_01330 f2a22f8863ccff153c125ba40112168e 478 Gene3D G3DSA:1.20.1740.10 13 470 7.1E-7 T 14-10-2018 RY45_07155 9ec233e564067386f4ffa351afef7390 285 SUPERFAMILY SSF46689 1 81 5.55E-22 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_07155 9ec233e564067386f4ffa351afef7390 285 SUPERFAMILY SSF53697 93 276 1.38E-40 T 14-10-2018 RY45_07155 9ec233e564067386f4ffa351afef7390 285 Gene3D G3DSA:1.10.10.10 1 80 2.9E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_07155 9ec233e564067386f4ffa351afef7390 285 Gene3D G3DSA:3.40.50.10490 95 276 6.1E-41 T 14-10-2018 RY45_07155 9ec233e564067386f4ffa351afef7390 285 Pfam PF01380 SIS domain 126 253 3.6E-25 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_07155 9ec233e564067386f4ffa351afef7390 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 77 2.0E-29 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RY45_06380 4121420adfae7de40bab72e66bee04b8 506 SMART SM00862 24 100 1.2E-14 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_06380 4121420adfae7de40bab72e66bee04b8 506 SUPERFAMILY SSF46894 2 102 4.82E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_06380 4121420adfae7de40bab72e66bee04b8 506 Gene3D G3DSA:1.10.10.10 4 106 3.1E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06380 4121420adfae7de40bab72e66bee04b8 506 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 100 1.0E-15 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_11830 b60e3acd9fca0c0ec705a42ecaeb2243 288 SUPERFAMILY SSF53474 8 285 8.72E-51 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_11830 b60e3acd9fca0c0ec705a42ecaeb2243 288 Pfam PF00561 alpha/beta hydrolase fold 34 146 4.5E-24 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_11830 b60e3acd9fca0c0ec705a42ecaeb2243 288 Gene3D G3DSA:3.40.50.1820 3 281 4.2E-58 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_11830 b60e3acd9fca0c0ec705a42ecaeb2243 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 5.2E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_11830 b60e3acd9fca0c0ec705a42ecaeb2243 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 58 73 5.2E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_11830 b60e3acd9fca0c0ec705a42ecaeb2243 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 5.2E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_00255 dea7d23d8eb26b54c1ebf10c114bfc8b 596 SUPERFAMILY SSF55073 434 578 1.33E-41 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_00255 dea7d23d8eb26b54c1ebf10c114bfc8b 596 Gene3D G3DSA:1.25.40.10 30 310 1.1E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_00255 dea7d23d8eb26b54c1ebf10c114bfc8b 596 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 427 578 1.9E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_00255 dea7d23d8eb26b54c1ebf10c114bfc8b 596 Pfam PF00990 Diguanylate cyclase, GGDEF domain 429 575 1.4E-38 T 14-10-2018 IPR000160 GGDEF domain RY45_00255 dea7d23d8eb26b54c1ebf10c114bfc8b 596 SMART SM00267 418 579 1.1E-49 T 14-10-2018 IPR000160 GGDEF domain RY45_00255 dea7d23d8eb26b54c1ebf10c114bfc8b 596 Gene3D G3DSA:3.30.70.270 415 577 1.9E-48 T 14-10-2018 RY45_00255 dea7d23d8eb26b54c1ebf10c114bfc8b 596 SUPERFAMILY SSF48452 166 353 1.08E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_07090 ccfd0a1d0a91fa22814a6a277302891b 650 SUPERFAMILY SSF53300 221 426 2.74E-16 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_07090 ccfd0a1d0a91fa22814a6a277302891b 650 SMART SM00327 220 428 1.7E-4 T 14-10-2018 IPR002035 von Willebrand factor, type A RY45_07090 ccfd0a1d0a91fa22814a6a277302891b 650 Gene3D G3DSA:3.40.50.410 223 434 1.1E-12 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_01820 a7877137e951c0f1fff5904d9ff49a8f 239 Gene3D G3DSA:3.40.50.2300 1 125 3.2E-41 T 14-10-2018 RY45_01820 a7877137e951c0f1fff5904d9ff49a8f 239 SMART SM00862 156 232 1.6E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_01820 a7877137e951c0f1fff5904d9ff49a8f 239 SUPERFAMILY SSF46894 133 234 3.12E-27 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_01820 a7877137e951c0f1fff5904d9ff49a8f 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 1.1E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_01820 a7877137e951c0f1fff5904d9ff49a8f 239 SUPERFAMILY SSF52172 3 126 4.27E-43 T 14-10-2018 IPR011006 CheY-like superfamily RY45_01820 a7877137e951c0f1fff5904d9ff49a8f 239 SMART SM00448 5 116 1.7E-44 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_01820 a7877137e951c0f1fff5904d9ff49a8f 239 Gene3D G3DSA:1.10.10.10 130 238 9.1E-38 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01820 a7877137e951c0f1fff5904d9ff49a8f 239 Pfam PF00072 Response regulator receiver domain 7 117 1.1E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_08440 c8e4ea5e515515dbd618a630981a2eb3 1261 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 928 1259 1.0E-55 T 14-10-2018 IPR007452 Translocation and assembly module TamB RY45_20825 3cb97ab31746512a75172c590b6ca61a 299 SUPERFAMILY SSF161098 21 291 5.79E-45 T 14-10-2018 IPR035906 MetI-like superfamily RY45_20825 3cb97ab31746512a75172c590b6ca61a 299 Gene3D G3DSA:1.10.3720.10 16 288 1.2E-37 T 14-10-2018 IPR035906 MetI-like superfamily RY45_20825 3cb97ab31746512a75172c590b6ca61a 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 280 4.4E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_19370 30239a352c155ebbfc2a183e9bb7e44f 680 Pfam PF11412 Disulphide bond corrector protein DsbC 40 145 5.7E-17 T 14-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RY45_19370 30239a352c155ebbfc2a183e9bb7e44f 680 Pfam PF13899 Thioredoxin-like 560 645 2.6E-11 T 14-10-2018 RY45_19370 30239a352c155ebbfc2a183e9bb7e44f 680 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 283 484 1.1E-7 T 14-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RY45_19370 30239a352c155ebbfc2a183e9bb7e44f 680 ProSitePatterns PS00194 Thioredoxin family active site. 579 597 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RY45_19370 30239a352c155ebbfc2a183e9bb7e44f 680 Gene3D G3DSA:3.40.30.10 551 643 2.8E-9 T 14-10-2018 RY45_19370 30239a352c155ebbfc2a183e9bb7e44f 680 SUPERFAMILY SSF52833 555 668 2.51E-12 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_07095 1057fa326519076f9a1419602b664c62 236 Pfam PF00005 ABC transporter 25 179 8.1E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_07095 1057fa326519076f9a1419602b664c62 236 SMART SM00382 29 230 7.5E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_07095 1057fa326519076f9a1419602b664c62 236 Gene3D G3DSA:3.40.50.300 23 218 2.5E-43 T 14-10-2018 RY45_07095 1057fa326519076f9a1419602b664c62 236 SUPERFAMILY SSF52540 4 216 1.12E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21905 0d565bebc1b5503158ef01a9b2141e35 87 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 2.9E-44 T 14-10-2018 IPR009383 Protein of unknown function DUF1040 RY45_21905 0d565bebc1b5503158ef01a9b2141e35 87 Gene3D G3DSA:1.10.1580.20 1 87 5.8E-41 T 14-10-2018 IPR038134 YihD-like superfamily RY45_21905 0d565bebc1b5503158ef01a9b2141e35 87 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 86 1.0E-30 T 14-10-2018 IPR009383 Protein of unknown function DUF1040 RY45_15130 c9e21bfdd4a66b6612815c55975002aa 397 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 14-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RY45_15130 c9e21bfdd4a66b6612815c55975002aa 397 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 373 1.1E-51 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_15130 c9e21bfdd4a66b6612815c55975002aa 397 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.991 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RY45_15130 c9e21bfdd4a66b6612815c55975002aa 397 SUPERFAMILY SSF53686 5 389 2.62E-144 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_15130 c9e21bfdd4a66b6612815c55975002aa 397 PIRSF PIRSF001413 2 395 1.1E-167 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RY45_15130 c9e21bfdd4a66b6612815c55975002aa 397 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 5.2E-191 T 14-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RY45_15130 c9e21bfdd4a66b6612815c55975002aa 397 Gene3D G3DSA:3.40.50.1100 53 383 6.0E-184 T 14-10-2018 RY45_15130 c9e21bfdd4a66b6612815c55975002aa 397 Gene3D G3DSA:3.40.50.1100 9 204 6.0E-184 T 14-10-2018 RY45_10970 d0c5a7570957580fb812707d9464cd4a 439 Pfam PF03882 MukF winged-helix domain 4 115 1.3E-49 T 14-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain RY45_10970 d0c5a7570957580fb812707d9464cd4a 439 SUPERFAMILY SSF46785 9 116 1.66E-38 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10970 d0c5a7570957580fb812707d9464cd4a 439 Pfam PF17192 MukF middle domain 120 279 3.1E-73 T 14-10-2018 IPR033440 Chromosome partition protein MukF, middle domain RY45_10970 d0c5a7570957580fb812707d9464cd4a 439 Gene3D G3DSA:1.10.225.40 351 439 7.2E-27 T 14-10-2018 IPR038198 MukF, C-terminal domain superfamily RY45_10970 d0c5a7570957580fb812707d9464cd4a 439 Gene3D G3DSA:1.10.10.10 24 116 6.2E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10970 d0c5a7570957580fb812707d9464cd4a 439 Pfam PF17193 MukF C-terminal domain 281 439 9.2E-73 T 14-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain RY45_10970 d0c5a7570957580fb812707d9464cd4a 439 Gene3D G3DSA:1.20.58.590 117 309 1.6E-62 T 14-10-2018 IPR036141 MukF, middle domain superfamily RY45_10970 d0c5a7570957580fb812707d9464cd4a 439 SUPERFAMILY SSF140570 117 279 7.06E-68 T 14-10-2018 IPR036141 MukF, middle domain superfamily RY45_00700 10b703676e62cebb98b3a0549101971f 546 SUPERFAMILY SSF56112 94 436 7.83E-47 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily RY45_00700 10b703676e62cebb98b3a0549101971f 546 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 5.3E-181 T 14-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 RY45_00700 10b703676e62cebb98b3a0549101971f 546 Pfam PF03109 ABC1 family 112 230 2.4E-34 T 14-10-2018 IPR004147 UbiB domain RY45_00700 10b703676e62cebb98b3a0549101971f 546 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 540 57.598 T 14-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 RY45_11640 e8dec5adf4d013a958afd40c3f254dec 324 Gene3D G3DSA:1.10.10.10 1 86 4.4E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_11640 e8dec5adf4d013a958afd40c3f254dec 324 SUPERFAMILY SSF53850 97 312 4.34E-26 T 14-10-2018 RY45_11640 e8dec5adf4d013a958afd40c3f254dec 324 Pfam PF03466 LysR substrate binding domain 121 312 1.3E-15 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_11640 e8dec5adf4d013a958afd40c3f254dec 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 64 1.1E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_11640 e8dec5adf4d013a958afd40c3f254dec 324 SUPERFAMILY SSF46785 6 85 3.81E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_11640 e8dec5adf4d013a958afd40c3f254dec 324 Gene3D G3DSA:3.40.190.10 97 308 4.3E-31 T 14-10-2018 RY45_11640 e8dec5adf4d013a958afd40c3f254dec 324 Gene3D G3DSA:3.40.190.10 179 280 4.3E-31 T 14-10-2018 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 Pfam PF00072 Response regulator receiver domain 181 300 1.5E-18 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 Gene3D G3DSA:2.40.50.180 39 153 1.7E-28 T 14-10-2018 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 Gene3D G3DSA:2.30.30.40 24 147 1.7E-28 T 14-10-2018 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 SMART SM00260 17 153 1.3E-20 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 PIRSF PIRSF002867 1 303 1.0E-105 T 14-10-2018 IPR024181 Chemotaxis response regulator CheV RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 Gene3D G3DSA:3.40.50.2300 179 303 5.0E-27 T 14-10-2018 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 SMART SM00448 179 299 1.9E-20 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 SUPERFAMILY SSF50341 16 157 1.57E-36 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 Pfam PF01584 CheW-like domain 21 155 3.2E-36 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_14835 cfb64be70f08b1dec35255ed3b9e0d8e 303 SUPERFAMILY SSF52172 179 302 1.85E-26 T 14-10-2018 IPR011006 CheY-like superfamily RY45_00150 f20b5a4cff963b35fc7aab843da3b45e 316 Pfam PF13343 Bacterial extracellular solute-binding protein 15 179 2.0E-14 T 14-10-2018 RY45_00150 f20b5a4cff963b35fc7aab843da3b45e 316 Gene3D G3DSA:3.40.190.10 24 176 3.6E-23 T 14-10-2018 RY45_00150 f20b5a4cff963b35fc7aab843da3b45e 316 SUPERFAMILY SSF53850 19 181 9.32E-30 T 14-10-2018 RY45_08355 641893e29ce610d52a3c1d209978a288 549 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 321 438 2.1E-27 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_08355 641893e29ce610d52a3c1d209978a288 549 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 486 537 1.0E-7 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_08355 641893e29ce610d52a3c1d209978a288 549 Gene3D G3DSA:3.40.120.10 320 443 1.8E-34 T 14-10-2018 RY45_08355 641893e29ce610d52a3c1d209978a288 549 SUPERFAMILY SSF53738 306 448 1.22E-31 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_08355 641893e29ce610d52a3c1d209978a288 549 SUPERFAMILY SSF53738 210 318 1.65E-9 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_08355 641893e29ce610d52a3c1d209978a288 549 Gene3D G3DSA:3.40.120.10 222 319 5.6E-46 T 14-10-2018 RY45_08355 641893e29ce610d52a3c1d209978a288 549 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 211 318 2.3E-17 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_08355 641893e29ce610d52a3c1d209978a288 549 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 141 150 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_08355 641893e29ce610d52a3c1d209978a288 549 Gene3D G3DSA:3.30.310.50 444 547 4.5E-33 T 14-10-2018 RY45_08355 641893e29ce610d52a3c1d209978a288 549 SUPERFAMILY SSF55957 434 544 5.49E-20 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_08355 641893e29ce610d52a3c1d209978a288 549 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 3.7E-284 T 14-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 RY45_08355 641893e29ce610d52a3c1d209978a288 549 Gene3D G3DSA:3.40.120.10 17 221 5.7E-73 T 14-10-2018 RY45_08355 641893e29ce610d52a3c1d209978a288 549 SUPERFAMILY SSF53738 26 236 1.08E-48 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_08355 641893e29ce610d52a3c1d209978a288 549 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 182 8.7E-37 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RY45_13525 2cbb7da39d6e5abd7e24d504e86f087e 151 Pfam PF04191 Phospholipid methyltransferase 39 138 2.1E-12 T 14-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 RY45_13525 2cbb7da39d6e5abd7e24d504e86f087e 151 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 121 150 3.0E-4 T 14-10-2018 RY45_13525 2cbb7da39d6e5abd7e24d504e86f087e 151 Gene3D G3DSA:1.20.120.1630 5 151 1.6E-24 T 14-10-2018 RY45_17925 79ba15c613684744757b951b9679669b 301 Pfam PF08338 Domain of unknown function (DUF1731) 250 296 9.2E-20 T 14-10-2018 IPR013549 Domain of unknown function DUF1731 RY45_17925 79ba15c613684744757b951b9679669b 301 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 1.5E-106 T 14-10-2018 IPR010099 Epimerase family protein SDR39U1 RY45_17925 79ba15c613684744757b951b9679669b 301 SUPERFAMILY SSF51735 1 296 1.88E-47 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_17925 79ba15c613684744757b951b9679669b 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 215 8.5E-24 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RY45_17925 79ba15c613684744757b951b9679669b 301 Gene3D G3DSA:3.40.50.720 1 287 1.1E-80 T 14-10-2018 RY45_14585 ec0ce34b31b62039cc82b52f499477e4 333 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 12 318 3.8E-111 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 RY45_14585 ec0ce34b31b62039cc82b52f499477e4 333 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 320 41.878 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 RY45_14585 ec0ce34b31b62039cc82b52f499477e4 333 SUPERFAMILY SSF52540 48 177 2.42E-15 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14585 ec0ce34b31b62039cc82b52f499477e4 333 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 309 3.4E-87 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 RY45_15675 0877c775a339a277aac43bb4dfd4107a 322 Gene3D G3DSA:3.40.50.1100 12 306 5.1E-123 T 14-10-2018 RY45_15675 0877c775a339a277aac43bb4dfd4107a 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 14-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RY45_15675 0877c775a339a277aac43bb4dfd4107a 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 311 1.3E-134 T 14-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RY45_15675 0877c775a339a277aac43bb4dfd4107a 322 Gene3D G3DSA:3.40.50.1100 43 145 5.1E-123 T 14-10-2018 RY45_15675 0877c775a339a277aac43bb4dfd4107a 322 SUPERFAMILY SSF53686 4 308 1.96E-93 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_15675 0877c775a339a277aac43bb4dfd4107a 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 2.8E-141 T 14-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RY45_15675 0877c775a339a277aac43bb4dfd4107a 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 7.1E-68 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 Gene3D G3DSA:3.40.50.80 442 596 4.8E-60 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 596 3.6E-244 T 14-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PIRSF PIRSF000207 1 596 4.6E-252 T 14-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00369 Flavodoxin signature 113 124 6.8E-16 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00369 Flavodoxin signature 145 155 6.8E-16 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00369 Flavodoxin signature 169 188 6.8E-16 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00369 Flavodoxin signature 65 78 6.8E-16 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 Gene3D G3DSA:1.20.990.10 280 380 5.8E-69 T 14-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 Pfam PF00175 Oxidoreductase NAD-binding domain 454 560 1.9E-18 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 Gene3D G3DSA:3.40.50.360 54 217 3.2E-48 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 Gene3D G3DSA:2.40.30.10 232 436 5.8E-69 T 14-10-2018 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 SUPERFAMILY SSF63380 229 443 1.17E-61 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 545 553 3.1E-28 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 491 502 3.1E-28 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 522 538 3.1E-28 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 453 472 3.1E-28 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 382 389 3.1E-28 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 416 425 3.1E-28 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 478 487 3.1E-28 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 270 280 3.1E-28 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 SUPERFAMILY SSF52218 63 209 1.57E-46 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 SUPERFAMILY SSF52343 441 596 1.57E-52 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 Pfam PF00258 Flavodoxin 66 193 3.1E-33 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 Pfam PF00667 FAD binding domain 231 298 2.0E-12 T 14-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 RY45_17370 363a7823578146c71ac1e4b34fa8996e 596 Pfam PF00667 FAD binding domain 349 421 1.1E-13 T 14-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 SUPERFAMILY SSF51621 1 339 1.08E-100 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 SUPERFAMILY SSF52935 323 469 2.75E-33 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 2.3E-77 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 2.3E-77 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 2.3E-77 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 2.3E-77 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.3E-77 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 2.3E-77 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 2.3E-77 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 Gene3D G3DSA:2.40.33.10 71 167 5.6E-146 T 14-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 Gene3D G3DSA:3.20.20.60 4 332 5.6E-146 T 14-10-2018 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 14-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 SUPERFAMILY SSF50800 70 167 5.41E-29 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 340 3.5E-150 T 14-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 4.1E-186 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 Gene3D G3DSA:3.40.1380.20 336 467 1.2E-40 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_15760 4826aa5ef6596b5811df290e3c1a8be6 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 2.3E-25 T 14-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_06505 9af58685a32b9fc8084b8c8e5221da23 702 Gene3D G3DSA:3.20.20.80 447 670 5.2E-34 T 14-10-2018 RY45_06505 9af58685a32b9fc8084b8c8e5221da23 702 Gene3D G3DSA:3.20.20.80 196 429 3.8E-57 T 14-10-2018 RY45_06505 9af58685a32b9fc8084b8c8e5221da23 702 SMART SM00642 213 663 5.4E-74 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_06505 9af58685a32b9fc8084b8c8e5221da23 702 PIRSF PIRSF036917 10 701 1.9E-271 T 14-10-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 RY45_06505 9af58685a32b9fc8084b8c8e5221da23 702 Pfam PF00128 Alpha amylase, catalytic domain 246 621 7.2E-46 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_06505 9af58685a32b9fc8084b8c8e5221da23 702 SUPERFAMILY SSF51445 202 671 1.09E-78 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 Gene3D G3DSA:3.30.750.70 68 134 1.4E-6 T 14-10-2018 RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 SUPERFAMILY SSF100950 73 233 3.68E-28 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 Pfam PF00455 DeoR C terminal sensor domain 75 232 3.2E-54 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 62 1.7E-22 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 SMART SM00420 6 58 5.9E-23 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-11 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-11 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 SMART SM01134 72 233 4.6E-72 T 14-10-2018 RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 Gene3D G3DSA:1.10.10.10 1 59 6.3E-8 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 14-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RY45_09040 d3071f79beeaaf1658d75a68d45f17cc 252 SUPERFAMILY SSF46785 3 77 4.26E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08060 c0fc9101e3fe7043555f7b5c4bb365a4 116 SUPERFAMILY SSF52833 3 114 8.13E-34 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_08060 c0fc9101e3fe7043555f7b5c4bb365a4 116 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 113 1.3E-30 T 14-10-2018 IPR006504 Transcriptional regulator Spx/MgsR RY45_08060 c0fc9101e3fe7043555f7b5c4bb365a4 116 Gene3D G3DSA:3.40.30.10 2 115 1.9E-42 T 14-10-2018 RY45_08060 c0fc9101e3fe7043555f7b5c4bb365a4 116 Pfam PF03960 ArsC family 6 111 7.3E-16 T 14-10-2018 IPR006660 Arsenate reductase-like RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 SUPERFAMILY SSF55008 106 174 1.7E-14 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 504 518 8.1E-28 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 648 658 8.1E-28 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 722 734 8.1E-28 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 353 367 8.1E-28 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 626 637 8.1E-28 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 699 718 8.1E-28 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 Pfam PF00702 haloacid dehalogenase-like hydrolase 500 712 6.5E-41 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 Gene3D G3DSA:3.40.1110.10 515 633 1.2E-81 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 Pfam PF00403 Heavy-metal-associated domain 115 161 6.0E-9 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 273 778 2.1E-69 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 506 512 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 SUPERFAMILY SSF81653 313 403 4.45E-18 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 SUPERFAMILY SSF56784 502 799 2.91E-48 T 14-10-2018 IPR036412 HAD-like superfamily RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 249 801 3.9E-170 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 699 715 7.7E-7 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 730 755 7.7E-7 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 548 566 7.7E-7 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 Gene3D G3DSA:3.40.50.1000 485 750 1.2E-81 T 14-10-2018 IPR023214 HAD superfamily RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 Pfam PF00122 E1-E2 ATPase 302 483 4.0E-44 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 Gene3D G3DSA:2.70.150.20 299 408 8.1E-29 T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 ProSitePatterns PS01229 Hypothetical cof family signature 2. 699 721 - T 14-10-2018 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 SUPERFAMILY SSF81665 252 797 1.57E-18 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 ProSitePatterns PS01047 Heavy-metal-associated domain. 115 144 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RY45_03590 6a9f91c41d9957f594d60feedd8c6843 805 Gene3D G3DSA:3.30.70.100 112 174 5.5E-14 T 14-10-2018 RY45_10085 c8a4450ba622b95bc27212200b781cd7 531 SUPERFAMILY SSF53850 27 529 2.17E-136 T 14-10-2018 RY45_10085 c8a4450ba622b95bc27212200b781cd7 531 Gene3D G3DSA:3.40.190.10 210 519 1.0E-156 T 14-10-2018 RY45_10085 c8a4450ba622b95bc27212200b781cd7 531 Gene3D G3DSA:3.10.105.10 289 507 1.0E-156 T 14-10-2018 RY45_10085 c8a4450ba622b95bc27212200b781cd7 531 PIRSF PIRSF002741 13 531 4.2E-103 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_10085 c8a4450ba622b95bc27212200b781cd7 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 448 4.1E-88 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_10085 c8a4450ba622b95bc27212200b781cd7 531 Gene3D G3DSA:3.90.76.10 37 209 1.0E-156 T 14-10-2018 RY45_00920 d30de801ee8594aff3c90bb8be1b2613 168 Pfam PF13671 AAA domain 2 117 2.9E-14 T 14-10-2018 RY45_00920 d30de801ee8594aff3c90bb8be1b2613 168 SUPERFAMILY SSF52540 1 165 4.34E-21 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00920 d30de801ee8594aff3c90bb8be1b2613 168 Gene3D G3DSA:3.40.50.300 1 165 7.3E-34 T 14-10-2018 RY45_02445 263e5940e67a210c2bc45b05e921219b 173 Pfam PF13302 Acetyltransferase (GNAT) domain 6 145 2.6E-24 T 14-10-2018 IPR000182 GNAT domain RY45_02445 263e5940e67a210c2bc45b05e921219b 173 SUPERFAMILY SSF55729 2 147 2.52E-34 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_02445 263e5940e67a210c2bc45b05e921219b 173 Gene3D G3DSA:3.40.630.30 1 159 3.1E-39 T 14-10-2018 RY45_08915 9f6e0c3ff2778907972b59924c2862a8 527 Gene3D G3DSA:3.40.50.1820 111 346 4.6E-27 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_08915 9f6e0c3ff2778907972b59924c2862a8 527 SUPERFAMILY SSF53474 79 343 5.22E-23 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_08915 9f6e0c3ff2778907972b59924c2862a8 527 Pfam PF12146 Serine aminopeptidase, S33 117 323 3.1E-10 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 RY45_11745 94f4b0e6b6114c7cac39d6c0843c995d 333 SUPERFAMILY SSF52172 1 142 1.04E-37 T 14-10-2018 IPR011006 CheY-like superfamily RY45_11745 94f4b0e6b6114c7cac39d6c0843c995d 333 Pfam PF00072 Response regulator receiver domain 6 116 1.5E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11745 94f4b0e6b6114c7cac39d6c0843c995d 333 SMART SM00471 146 283 3.5E-11 T 14-10-2018 IPR003607 HD/PDEase domain RY45_11745 94f4b0e6b6114c7cac39d6c0843c995d 333 SUPERFAMILY SSF109604 125 314 6.77E-43 T 14-10-2018 RY45_11745 94f4b0e6b6114c7cac39d6c0843c995d 333 Gene3D G3DSA:1.10.3210.10 129 326 4.0E-72 T 14-10-2018 RY45_11745 94f4b0e6b6114c7cac39d6c0843c995d 333 SMART SM00448 4 116 6.4E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11745 94f4b0e6b6114c7cac39d6c0843c995d 333 Gene3D G3DSA:3.40.50.2300 1 128 5.6E-34 T 14-10-2018 RY45_11745 94f4b0e6b6114c7cac39d6c0843c995d 333 Pfam PF01966 HD domain 153 273 6.1E-23 T 14-10-2018 IPR006674 HD domain RY45_03985 c3197ffae28c9378f3dc20d27c2ecf47 188 SUPERFAMILY SSF51206 13 117 5.76E-17 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like RY45_03985 c3197ffae28c9378f3dc20d27c2ecf47 188 Pfam PF00027 Cyclic nucleotide-binding domain 29 111 4.1E-9 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_03985 c3197ffae28c9378f3dc20d27c2ecf47 188 Gene3D G3DSA:2.60.120.10 9 135 1.3E-16 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 SUPERFAMILY SSF55781 22 121 8.5E-6 T 14-10-2018 RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 Gene3D G3DSA:3.40.50.300 264 443 3.0E-66 T 14-10-2018 RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 Gene3D G3DSA:1.10.10.60 598 640 3.6E-13 T 14-10-2018 RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 Gene3D G3DSA:1.10.8.60 444 525 5.7E-20 T 14-10-2018 RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 485 494 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 Pfam PF02954 Bacterial regulatory protein, Fis family 599 638 7.2E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 SUPERFAMILY SSF52540 271 510 2.28E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 SUPERFAMILY SSF46689 599 640 1.08E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 Gene3D G3DSA:3.30.450.40 10 140 1.1E-5 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 295 308 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 Pfam PF00158 Sigma-54 interaction domain 271 439 4.4E-70 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_12040 bc0153722c96de8f12bd6e4deedb1afe 644 SMART SM00382 291 446 8.0E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_09530 8ead50d3fd6f4d9f8b07814a00c3a5ed 404 Gene3D G3DSA:3.40.640.10 16 262 6.8E-167 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_09530 8ead50d3fd6f4d9f8b07814a00c3a5ed 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 55.406 T 14-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 RY45_09530 8ead50d3fd6f4d9f8b07814a00c3a5ed 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RY45_09530 8ead50d3fd6f4d9f8b07814a00c3a5ed 404 Pfam PF00266 Aminotransferase class-V 5 368 2.4E-88 T 14-10-2018 IPR000192 Aminotransferase class V domain RY45_09530 8ead50d3fd6f4d9f8b07814a00c3a5ed 404 Gene3D G3DSA:3.90.1150.10 5 376 6.8E-167 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_09530 8ead50d3fd6f4d9f8b07814a00c3a5ed 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 2.3E-233 T 14-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 RY45_09530 8ead50d3fd6f4d9f8b07814a00c3a5ed 404 SUPERFAMILY SSF53383 5 391 1.45E-114 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_09530 8ead50d3fd6f4d9f8b07814a00c3a5ed 404 PIRSF PIRSF005572 2 384 1.1E-136 T 14-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RY45_04920 5d648be397d58b15b92e11d9d7f47573 207 SUPERFAMILY SSF48498 89 192 7.12E-6 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_04920 5d648be397d58b15b92e11d9d7f47573 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 9.8E-11 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_04920 5d648be397d58b15b92e11d9d7f47573 207 Gene3D G3DSA:1.10.357.10 1 206 7.3E-54 T 14-10-2018 RY45_04920 5d648be397d58b15b92e11d9d7f47573 207 SUPERFAMILY SSF46689 6 79 3.03E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_21215 7ce11e30818a15c70646db7723340da8 254 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 248 1.9E-20 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_21215 7ce11e30818a15c70646db7723340da8 254 Gene3D G3DSA:3.40.190.10 28 247 2.5E-24 T 14-10-2018 RY45_21215 7ce11e30818a15c70646db7723340da8 254 Gene3D G3DSA:3.40.190.10 105 204 2.5E-24 T 14-10-2018 RY45_21215 7ce11e30818a15c70646db7723340da8 254 SUPERFAMILY SSF53850 10 247 4.09E-33 T 14-10-2018 RY45_21215 7ce11e30818a15c70646db7723340da8 254 SMART SM00062 19 250 2.5E-11 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_04595 cca756093468ed735e0d620e0ab40277 265 Gene3D G3DSA:1.10.287.1080 132 264 3.2E-46 T 14-10-2018 RY45_04595 cca756093468ed735e0d620e0ab40277 265 TIGRFAM TIGR00444 mazG: MazG family protein 13 260 2.9E-104 T 14-10-2018 IPR011551 NTP pyrophosphohydrolase MazG RY45_04595 cca756093468ed735e0d620e0ab40277 265 SUPERFAMILY SSF101386 138 239 2.45E-24 T 14-10-2018 RY45_04595 cca756093468ed735e0d620e0ab40277 265 Gene3D G3DSA:1.10.287.1080 4 128 1.0E-43 T 14-10-2018 RY45_04595 cca756093468ed735e0d620e0ab40277 265 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 171 232 3.4E-7 T 14-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RY45_04595 cca756093468ed735e0d620e0ab40277 265 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 2.4E-26 T 14-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RY45_04595 cca756093468ed735e0d620e0ab40277 265 SUPERFAMILY SSF101386 5 107 2.29E-25 T 14-10-2018 RY45_22210 0d3e75ab3792b4fd86df8a1800e9300b 660 Gene3D G3DSA:1.10.3470.10 348 660 5.8E-68 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_22210 0d3e75ab3792b4fd86df8a1800e9300b 660 SUPERFAMILY SSF81345 16 327 3.4E-56 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_22210 0d3e75ab3792b4fd86df8a1800e9300b 660 Gene3D G3DSA:1.10.3470.10 8 331 9.2E-72 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_22210 0d3e75ab3792b4fd86df8a1800e9300b 660 SUPERFAMILY SSF81345 348 659 4.18E-62 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_22210 0d3e75ab3792b4fd86df8a1800e9300b 660 Pfam PF01032 FecCD transport family 361 659 1.2E-68 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RY45_22210 0d3e75ab3792b4fd86df8a1800e9300b 660 Pfam PF01032 FecCD transport family 26 325 1.7E-65 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RY45_13070 411f7de57e14744e026f1121cb62eb6b 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 261 8.0E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_13070 411f7de57e14744e026f1121cb62eb6b 270 Gene3D G3DSA:1.10.3720.10 61 262 4.2E-15 T 14-10-2018 IPR035906 MetI-like superfamily RY45_13070 411f7de57e14744e026f1121cb62eb6b 270 SUPERFAMILY SSF161098 65 254 1.31E-18 T 14-10-2018 IPR035906 MetI-like superfamily RY45_20930 efe27f70eeb724619cb5802bf38c258b 360 PIRSF PIRSF000112 1 359 6.6E-97 T 14-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 RY45_20930 efe27f70eeb724619cb5802bf38c258b 360 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_20930 efe27f70eeb724619cb5802bf38c258b 360 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 348 1.1E-69 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RY45_20930 efe27f70eeb724619cb5802bf38c258b 360 Gene3D G3DSA:1.20.1090.10 160 360 1.6E-75 T 14-10-2018 RY45_20930 efe27f70eeb724619cb5802bf38c258b 360 SUPERFAMILY SSF56796 3 355 5.89E-94 T 14-10-2018 RY45_20930 efe27f70eeb724619cb5802bf38c258b 360 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_20930 efe27f70eeb724619cb5802bf38c258b 360 Gene3D G3DSA:3.40.50.1970 3 159 9.5E-44 T 14-10-2018 RY45_01495 98b2bcd4f13dc4db4f3caf687186eae1 498 SUPERFAMILY SSF53720 9 496 1.23E-166 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_01495 98b2bcd4f13dc4db4f3caf687186eae1 498 Gene3D G3DSA:3.40.605.10 24 491 1.5E-177 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_01495 98b2bcd4f13dc4db4f3caf687186eae1 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RY45_01495 98b2bcd4f13dc4db4f3caf687186eae1 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RY45_01495 98b2bcd4f13dc4db4f3caf687186eae1 498 Pfam PF00171 Aldehyde dehydrogenase family 35 492 1.2E-172 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_01495 98b2bcd4f13dc4db4f3caf687186eae1 498 Gene3D G3DSA:3.40.309.10 271 463 1.5E-177 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_05235 69bbbb3c5c95adc3e97e8b0ca3063e31 222 Gene3D G3DSA:3.90.550.10 1 221 6.5E-53 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_05235 69bbbb3c5c95adc3e97e8b0ca3063e31 222 Pfam PF00483 Nucleotidyl transferase 2 121 9.9E-22 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RY45_05235 69bbbb3c5c95adc3e97e8b0ca3063e31 222 SUPERFAMILY SSF53448 1 216 3.15E-50 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_19975 85ac14235ebd0400558d07402eed5fb6 752 Pfam PF01734 Patatin-like phospholipase 34 225 5.3E-30 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RY45_19975 85ac14235ebd0400558d07402eed5fb6 752 Gene3D G3DSA:3.10.20.310 341 412 4.0E-8 T 14-10-2018 RY45_19975 85ac14235ebd0400558d07402eed5fb6 752 SUPERFAMILY SSF52151 29 252 3.14E-52 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_19975 85ac14235ebd0400558d07402eed5fb6 752 Gene3D G3DSA:3.40.1090.10 137 275 1.1E-17 T 14-10-2018 RY45_19975 85ac14235ebd0400558d07402eed5fb6 752 Gene3D G3DSA:3.40.1090.10 20 131 7.4E-29 T 14-10-2018 RY45_12195 b712249e2bb3add317825351f6bc213f 103 Pfam PF06945 Protein of unknown function (DUF1289) 3 45 2.6E-17 T 14-10-2018 IPR010710 Protein of unknown function DUF1289 RY45_12195 b712249e2bb3add317825351f6bc213f 103 Pfam PF14375 Cysteine-rich CWC 53 95 2.8E-5 T 14-10-2018 IPR032720 Cysteine-rich CWC RY45_01145 53bd9ea1f933d89c51a20fa54c6956ab 421 SUPERFAMILY SSF53756 58 414 6.0E-20 T 14-10-2018 RY45_01145 53bd9ea1f933d89c51a20fa54c6956ab 421 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 211 7.7E-60 T 14-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 RY45_01145 53bd9ea1f933d89c51a20fa54c6956ab 421 Pfam PF00534 Glycosyl transferases group 1 301 398 1.2E-8 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 RY45_01145 53bd9ea1f933d89c51a20fa54c6956ab 421 Gene3D G3DSA:3.40.50.11720 36 209 3.8E-45 T 14-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 RY45_01145 53bd9ea1f933d89c51a20fa54c6956ab 421 Gene3D G3DSA:3.40.50.2000 215 401 1.2E-66 T 14-10-2018 RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 SMART SM00487 444 656 2.3E-16 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 Gene3D G3DSA:3.90.1570.30 221 371 1.3E-9 T 14-10-2018 RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 SMART SM00490 745 838 4.7E-9 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 Pfam PF04851 Type III restriction enzyme, res subunit 446 625 1.6E-36 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 239 398 1.6E-12 T 14-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 Gene3D G3DSA:3.40.50.300 643 866 9.6E-50 T 14-10-2018 RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 Pfam PF00271 Helicase conserved C-terminal domain 724 836 9.1E-11 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 Pfam PF08463 EcoEI R protein C-terminal 1012 1171 3.9E-27 T 14-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 SUPERFAMILY SSF52540 461 844 1.44E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07615 e52a45f4b734212eeee1eb34dcefe599 1177 Gene3D G3DSA:3.40.50.300 429 641 2.2E-52 T 14-10-2018 RY45_07335 584be758da2b8d008f5ee184e21e63ab 211 SMART SM00382 27 206 3.9E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_07335 584be758da2b8d008f5ee184e21e63ab 211 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_07335 584be758da2b8d008f5ee184e21e63ab 211 Pfam PF00005 ABC transporter 19 160 1.0E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_07335 584be758da2b8d008f5ee184e21e63ab 211 SUPERFAMILY SSF52540 2 196 3.22E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07335 584be758da2b8d008f5ee184e21e63ab 211 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 3 201 1.2E-77 T 14-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 RY45_07335 584be758da2b8d008f5ee184e21e63ab 211 Gene3D G3DSA:3.40.50.300 1 203 1.9E-45 T 14-10-2018 RY45_06720 3b1195e82524bbee109d6316b5e9ae47 203 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 115 200 8.3E-24 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RY45_06720 3b1195e82524bbee109d6316b5e9ae47 203 SUPERFAMILY SSF54534 6 202 2.36E-55 T 14-10-2018 RY45_06720 3b1195e82524bbee109d6316b5e9ae47 203 Gene3D G3DSA:1.10.287.460 3 66 3.6E-17 T 14-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 RY45_06720 3b1195e82524bbee109d6316b5e9ae47 203 Gene3D G3DSA:3.10.50.40 67 203 1.3E-49 T 14-10-2018 RY45_06720 3b1195e82524bbee109d6316b5e9ae47 203 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 5 106 8.1E-26 T 14-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 SUPERFAMILY SSF46894 166 243 6.8E-18 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 SMART SM00421 180 237 2.0E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 Pfam PF03472 Autoinducer binding domain 20 165 1.3E-31 T 14-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 1.1E-9 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 1.1E-9 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 1.1E-9 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 Gene3D G3DSA:1.10.10.10 179 243 9.2E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 Pfam PF00196 Bacterial regulatory proteins, luxR family 183 235 2.3E-16 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 SUPERFAMILY SSF75516 5 171 5.75E-39 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily RY45_22080 a28df3a1b36b48bcecf8db175025ec9c 258 Gene3D G3DSA:3.30.450.80 6 165 2.9E-41 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily RY45_01905 ed31a795774ae32a52907b156a838caa 101 Gene3D G3DSA:4.10.830.10 40 101 1.2E-24 T 14-10-2018 RY45_01905 ed31a795774ae32a52907b156a838caa 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.518 T 14-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid RY45_01905 ed31a795774ae32a52907b156a838caa 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 14-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01905 ed31a795774ae32a52907b156a838caa 101 SUPERFAMILY SSF57716 2 101 4.21E-38 T 14-10-2018 RY45_01905 ed31a795774ae32a52907b156a838caa 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.9E-27 T 14-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_06820 7580d07f7f9466b63029dde36e596d5a 465 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 31 456 3.7E-120 T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RY45_06820 7580d07f7f9466b63029dde36e596d5a 465 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 374 394 - T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RY45_06820 7580d07f7f9466b63029dde36e596d5a 465 Pfam PF00860 Permease family 35 426 1.5E-96 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RY45_06820 7580d07f7f9466b63029dde36e596d5a 465 TIGRFAM TIGR03173 pbuX: xanthine permease 40 458 2.6E-134 T 14-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 RY45_00040 793c9a21f715c522a79bd5f182207d16 145 Gene3D G3DSA:2.60.40.790 33 136 4.6E-20 T 14-10-2018 IPR008978 HSP20-like chaperone RY45_00040 793c9a21f715c522a79bd5f182207d16 145 Pfam PF00011 Hsp20/alpha crystallin family 41 135 9.9E-15 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain RY45_00040 793c9a21f715c522a79bd5f182207d16 145 SUPERFAMILY SSF49764 31 135 1.92E-18 T 14-10-2018 IPR008978 HSP20-like chaperone RY45_14990 2a639e33725a1aced18e79c25439af93 179 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 176 4.1E-63 T 14-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RY45_14990 2a639e33725a1aced18e79c25439af93 179 SUPERFAMILY SSF51182 1 178 8.1E-68 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_14990 2a639e33725a1aced18e79c25439af93 179 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 5 177 5.4E-66 T 14-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RY45_14990 2a639e33725a1aced18e79c25439af93 179 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 175 5.0E-51 T 14-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RY45_14990 2a639e33725a1aced18e79c25439af93 179 Gene3D G3DSA:2.60.120.10 1 179 2.1E-65 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_12870 9d419de537ae188a96bba4053582c00a 307 Pfam PF00550 Phosphopantetheine attachment site 239 290 1.5E-7 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain RY45_12870 9d419de537ae188a96bba4053582c00a 307 Gene3D G3DSA:1.10.1200.10 225 299 4.0E-23 T 14-10-2018 IPR036736 ACP-like superfamily RY45_12870 9d419de537ae188a96bba4053582c00a 307 SUPERFAMILY SSF52499 1 207 1.02E-59 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_12870 9d419de537ae188a96bba4053582c00a 307 Pfam PF00857 Isochorismatase family 30 202 6.0E-34 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 RY45_12870 9d419de537ae188a96bba4053582c00a 307 PIRSF PIRSF001111 1 302 1.4E-127 T 14-10-2018 IPR016291 Isochorismatase GO:0008908 RY45_12870 9d419de537ae188a96bba4053582c00a 307 SUPERFAMILY SSF47336 231 302 6.54E-10 T 14-10-2018 IPR036736 ACP-like superfamily RY45_12870 9d419de537ae188a96bba4053582c00a 307 PRINTS PR01398 Isochorismatase signature 166 184 3.1E-45 T 14-10-2018 IPR016291 Isochorismatase GO:0008908 RY45_12870 9d419de537ae188a96bba4053582c00a 307 PRINTS PR01398 Isochorismatase signature 2 14 3.1E-45 T 14-10-2018 IPR016291 Isochorismatase GO:0008908 RY45_12870 9d419de537ae188a96bba4053582c00a 307 PRINTS PR01398 Isochorismatase signature 110 132 3.1E-45 T 14-10-2018 IPR016291 Isochorismatase GO:0008908 RY45_12870 9d419de537ae188a96bba4053582c00a 307 PRINTS PR01398 Isochorismatase signature 184 201 3.1E-45 T 14-10-2018 IPR016291 Isochorismatase GO:0008908 RY45_12870 9d419de537ae188a96bba4053582c00a 307 PRINTS PR01398 Isochorismatase signature 61 78 3.1E-45 T 14-10-2018 IPR016291 Isochorismatase GO:0008908 RY45_12870 9d419de537ae188a96bba4053582c00a 307 PRINTS PR01398 Isochorismatase signature 78 97 3.1E-45 T 14-10-2018 IPR016291 Isochorismatase GO:0008908 RY45_12870 9d419de537ae188a96bba4053582c00a 307 Gene3D G3DSA:3.40.50.850 1 208 5.9E-76 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_21245 1707c467970a570035f6b40085446bd3 326 SUPERFAMILY SSF55174 17 70 1.21E-10 T 14-10-2018 RY45_21245 1707c467970a570035f6b40085446bd3 326 SUPERFAMILY SSF55120 78 318 2.67E-79 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_21245 1707c467970a570035f6b40085446bd3 326 SMART SM00363 18 76 2.0E-7 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_21245 1707c467970a570035f6b40085446bd3 326 Pfam PF00849 RNA pseudouridylate synthase 92 242 1.6E-30 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_21245 1707c467970a570035f6b40085446bd3 326 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 15 313 1.0E-102 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_21245 1707c467970a570035f6b40085446bd3 326 Gene3D G3DSA:3.10.290.10 2 76 7.4E-20 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_21245 1707c467970a570035f6b40085446bd3 326 Gene3D G3DSA:3.30.2350.10 84 316 2.8E-73 T 14-10-2018 RY45_21245 1707c467970a570035f6b40085446bd3 326 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_21245 1707c467970a570035f6b40085446bd3 326 Pfam PF01479 S4 domain 18 64 5.1E-9 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 SUPERFAMILY SSF57783 4 101 2.38E-37 T 14-10-2018 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 SMART SM00493 259 330 1.4E-13 T 14-10-2018 IPR006171 TOPRIM domain RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 SUPERFAMILY SSF117023 449 584 9.15E-31 T 14-10-2018 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 TIGRFAM TIGR01391 dnaG: DNA primase 4 418 6.3E-146 T 14-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Gene3D G3DSA:1.10.860.10 438 587 1.1E-29 T 14-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Pfam PF13662 Toprim domain 260 324 2.7E-13 T 14-10-2018 IPR006171 TOPRIM domain RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Hamap MF_00974 DNA primase [dnaG]. 4 583 29.268 T 14-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 SMART SM00766 452 582 1.3E-23 T 14-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Gene3D G3DSA:3.40.1360.10 241 367 1.8E-41 T 14-10-2018 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Pfam PF10410 DnaB-helicase binding domain of primase 370 423 5.7E-8 T 14-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Gene3D G3DSA:3.90.580.10 1 102 2.4E-39 T 14-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Pfam PF01807 CHC2 zinc finger 6 101 4.6E-40 T 14-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 PIRSF PIRSF002811 2 593 1.2E-140 T 14-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Pfam PF08278 DNA primase DnaG DnaB-binding 454 581 1.6E-24 T 14-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 251 4.2E-40 T 14-10-2018 IPR013264 DNA primase, catalytic core, N-terminal RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 Gene3D G3DSA:3.90.980.10 116 240 5.5E-44 T 14-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 SMART SM00400 36 90 9.9E-37 T 14-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RY45_04665 a6a4bb5d6c5423127d90f7556a1c9516 595 SUPERFAMILY SSF56731 117 424 7.72E-106 T 14-10-2018 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 Gene3D G3DSA:1.10.10.10 163 238 2.7E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04650 db3dbbca1862492fab8057a0208a316d 327 Gene3D G3DSA:1.10.10.10 245 320 3.0E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04650 db3dbbca1862492fab8057a0208a316d 327 PRINTS PR00046 Major sigma-70 factor signature 138 146 3.4E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 PRINTS PR00046 Major sigma-70 factor signature 283 298 3.4E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 PRINTS PR00046 Major sigma-70 factor signature 114 127 3.4E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 PRINTS PR00046 Major sigma-70 factor signature 262 274 3.4E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 PRINTS PR00046 Major sigma-70 factor signature 298 309 3.4E-27 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 86 313 2.0E-35 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 283 309 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 SUPERFAMILY SSF88659 220 318 1.87E-23 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_04650 db3dbbca1862492fab8057a0208a316d 327 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 114 127 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 Pfam PF00140 Sigma-70 factor, region 1.2 52 85 1.2E-12 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 Pfam PF04545 Sigma-70, region 4 258 311 1.0E-17 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 Pfam PF04542 Sigma-70 region 2 90 159 1.4E-20 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 SUPERFAMILY SSF88659 163 237 3.66E-14 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_04650 db3dbbca1862492fab8057a0208a316d 327 Pfam PF04539 Sigma-70 region 3 170 243 1.6E-18 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 SUPERFAMILY SSF88946 52 160 9.03E-46 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 Gene3D G3DSA:1.10.601.10 2 159 6.6E-47 T 14-10-2018 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 47 324 2.4E-139 T 14-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_04650 db3dbbca1862492fab8057a0208a316d 327 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 8 324 39.606 T 14-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_03545 27e981f8f82cdfaa99012fc6a0908fbe 508 Pfam PF11230 Protein of unknown function (DUF3029) 16 497 2.3E-215 T 14-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted RY45_03545 27e981f8f82cdfaa99012fc6a0908fbe 508 PIRSF PIRSF028991 1 507 5.2E-240 T 14-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted RY45_03545 27e981f8f82cdfaa99012fc6a0908fbe 508 SUPERFAMILY SSF51998 20 460 6.41E-85 T 14-10-2018 RY45_03545 27e981f8f82cdfaa99012fc6a0908fbe 508 TIGRFAM TIGR04040 glycyl_YjjI: glycine radical enzyme, YjjI family 6 497 5.6E-230 T 14-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted RY45_13445 b4dd51cb81ac9a713b8615028a99f725 200 Pfam PF06041 Bacterial protein of unknown function (DUF924) 8 197 1.5E-59 T 14-10-2018 IPR010323 Protein of unknown function DUF924 RY45_13445 b4dd51cb81ac9a713b8615028a99f725 200 SUPERFAMILY SSF48452 2 196 1.14E-59 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_13445 b4dd51cb81ac9a713b8615028a99f725 200 Gene3D G3DSA:1.20.58.320 2 88 5.1E-22 T 14-10-2018 RY45_13445 b4dd51cb81ac9a713b8615028a99f725 200 Gene3D G3DSA:1.25.40.10 89 200 1.0E-31 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 SUPERFAMILY SSF103190 89 171 5.1E-9 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_17350 72758912a6af80b53d06ffe3595a5108 623 SUPERFAMILY SSF58104 314 621 1.57E-75 T 14-10-2018 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 Gene3D G3DSA:3.30.450.20 54 266 4.7E-46 T 14-10-2018 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 433 589 9.4E-40 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 SMART SM00304 292 346 1.5E-11 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 Gene3D G3DSA:3.30.450.20 65 163 4.7E-46 T 14-10-2018 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 Pfam PF00672 HAMP domain 294 339 2.5E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 Pfam PF02743 Cache domain 40 254 1.2E-15 T 14-10-2018 IPR033479 Double Cache domain 1 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 SMART SM00283 365 622 4.8E-66 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_17350 72758912a6af80b53d06ffe3595a5108 623 Gene3D G3DSA:1.10.287.950 292 623 1.5E-70 T 14-10-2018 RY45_15405 31d78b2a0534b94151c546e71e0b6295 387 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 261 8.3E-16 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_15405 31d78b2a0534b94151c546e71e0b6295 387 SUPERFAMILY SSF111369 50 263 2.48E-23 T 14-10-2018 RY45_15405 31d78b2a0534b94151c546e71e0b6295 387 Gene3D G3DSA:2.40.50.100 58 220 2.3E-88 T 14-10-2018 RY45_15405 31d78b2a0534b94151c546e71e0b6295 387 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 374 1.6E-50 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_15405 31d78b2a0534b94151c546e71e0b6295 387 Gene3D G3DSA:2.40.420.20 42 370 2.3E-88 T 14-10-2018 RY45_15405 31d78b2a0534b94151c546e71e0b6295 387 Gene3D G3DSA:1.10.287.470 92 183 2.3E-88 T 14-10-2018 RY45_15405 31d78b2a0534b94151c546e71e0b6295 387 Gene3D G3DSA:2.40.30.170 47 310 2.3E-88 T 14-10-2018 RY45_14535 09bcb20baab4afb5f2a3f6382d075ab8 660 SUPERFAMILY SSF141371 541 651 1.51E-9 T 14-10-2018 RY45_14535 09bcb20baab4afb5f2a3f6382d075ab8 660 Gene3D G3DSA:1.10.287.950 209 531 2.6E-52 T 14-10-2018 RY45_14535 09bcb20baab4afb5f2a3f6382d075ab8 660 Pfam PF07238 PilZ domain 543 648 3.8E-14 T 14-10-2018 IPR009875 PilZ domain GO:0035438 RY45_14535 09bcb20baab4afb5f2a3f6382d075ab8 660 SMART SM00283 268 529 1.2E-43 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_14535 09bcb20baab4afb5f2a3f6382d075ab8 660 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 336 488 6.0E-34 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_14535 09bcb20baab4afb5f2a3f6382d075ab8 660 Gene3D G3DSA:2.40.10.220 537 657 2.3E-8 T 14-10-2018 RY45_14535 09bcb20baab4afb5f2a3f6382d075ab8 660 SUPERFAMILY SSF58104 236 533 3.27E-51 T 14-10-2018 RY45_20875 4a5f80ddebad0b13f519f5ab2f0a4b91 108 Pfam PF07383 Protein of unknown function (DUF1496) 38 88 1.6E-20 T 14-10-2018 IPR009971 Protein of unknown function DUF1496 RY45_17970 32a5b11d7f30ddaacc6b93af67cf2d90 183 Pfam PF04279 Intracellular septation protein A 1 175 1.0E-69 T 14-10-2018 IPR006008 Intracellular septation protein A GO:0016021 RY45_17970 32a5b11d7f30ddaacc6b93af67cf2d90 183 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 177 6.9E-66 T 14-10-2018 IPR006008 Intracellular septation protein A GO:0016021 RY45_17970 32a5b11d7f30ddaacc6b93af67cf2d90 183 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 18.833 T 14-10-2018 IPR006008 Intracellular septation protein A GO:0016021 RY45_15635 b092ac09ee517741a77facf4b6620f55 581 Gene3D G3DSA:1.20.1560.10 4 322 1.8E-28 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_15635 b092ac09ee517741a77facf4b6620f55 581 SUPERFAMILY SSF90123 7 326 7.06E-39 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_15635 b092ac09ee517741a77facf4b6620f55 581 Gene3D G3DSA:3.40.50.300 325 578 7.6E-70 T 14-10-2018 RY45_15635 b092ac09ee517741a77facf4b6620f55 581 SMART SM00382 365 557 3.5E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15635 b092ac09ee517741a77facf4b6620f55 581 SUPERFAMILY SSF52540 332 575 3.69E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15635 b092ac09ee517741a77facf4b6620f55 581 Pfam PF00664 ABC transporter transmembrane region 25 287 5.5E-6 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RY45_15635 b092ac09ee517741a77facf4b6620f55 581 Pfam PF00005 ABC transporter 357 508 6.9E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_15635 b092ac09ee517741a77facf4b6620f55 581 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 7 539 1.1E-140 T 14-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 RY45_15635 b092ac09ee517741a77facf4b6620f55 581 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 SUPERFAMILY SSF51735 310 492 2.1E-48 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 5 715 0.0 T 14-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 Gene3D G3DSA:1.10.1040.50 497 710 4.2E-67 T 14-10-2018 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 313 491 1.3E-52 T 14-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 491 516 - T 14-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 SUPERFAMILY SSF48179 494 591 1.62E-26 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 SUPERFAMILY SSF52096 1 300 4.72E-67 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 494 588 8.5E-26 T 14-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 628 710 5.6E-5 T 14-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 203 4.1E-39 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 Gene3D G3DSA:3.40.50.720 302 496 6.9E-59 T 14-10-2018 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 SUPERFAMILY SSF48179 624 715 1.87E-24 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_12060 8f9ce2ef8fc4e56be472874a8295ee31 715 Gene3D G3DSA:3.90.226.10 1 301 6.0E-102 T 14-10-2018 RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 SUPERFAMILY SSF56519 57 253 2.49E-51 T 14-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 SUPERFAMILY SSF56601 255 616 6.36E-91 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 Gene3D G3DSA:3.40.710.10 250 618 8.3E-91 T 14-10-2018 RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 240 7.1E-45 T 14-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 4 620 49.929 T 14-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 616 1.3E-232 T 14-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 Pfam PF00905 Penicillin binding protein transpeptidase domain 272 613 7.4E-74 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 Gene3D G3DSA:3.90.1310.10 65 249 3.5E-49 T 14-10-2018 RY45_16775 00fb4c02dbb998bf7fa3ed25f8adf802 640 Gene3D G3DSA:3.30.1390.30 86 161 3.5E-49 T 14-10-2018 RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 Pfam PF12848 ABC transporter 224 309 1.8E-21 T 14-10-2018 IPR032781 ABC-transporter extension domain RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 SUPERFAMILY SSF52540 297 524 3.88E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 Gene3D G3DSA:3.40.50.300 2 278 2.1E-57 T 14-10-2018 RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 Pfam PF00005 ABC transporter 18 184 1.0E-19 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 Gene3D G3DSA:3.40.50.300 282 528 1.3E-56 T 14-10-2018 RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 Pfam PF00005 ABC transporter 336 467 7.9E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 SMART SM00382 26 238 2.5E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 SMART SM00382 344 512 2.8E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_12590 a38f2d808ba91ddf43f89609b4494015 530 SUPERFAMILY SSF52540 6 237 6.42E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07455 904a15aa381f9df9b8e1d6df935f39ee 368 Pfam PF03054 tRNA methyl transferase 8 360 3.1E-141 T 14-10-2018 RY45_07455 904a15aa381f9df9b8e1d6df935f39ee 368 Gene3D G3DSA:3.40.50.620 1 213 2.4E-96 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_07455 904a15aa381f9df9b8e1d6df935f39ee 368 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 8 360 1.1E-154 T 14-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RY45_07455 904a15aa381f9df9b8e1d6df935f39ee 368 Gene3D G3DSA:2.40.30.10 282 367 1.8E-32 T 14-10-2018 RY45_07455 904a15aa381f9df9b8e1d6df935f39ee 368 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 361 40.479 T 14-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RY45_07455 904a15aa381f9df9b8e1d6df935f39ee 368 SUPERFAMILY SSF52402 8 245 1.41E-55 T 14-10-2018 RY45_07455 904a15aa381f9df9b8e1d6df935f39ee 368 Gene3D G3DSA:2.30.30.280 214 281 1.6E-26 T 14-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RY45_18450 126c948f11c2aa1f9c50b5d1ea206635 458 Pfam PF00155 Aminotransferase class I and II 125 428 5.3E-12 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_18450 126c948f11c2aa1f9c50b5d1ea206635 458 Gene3D G3DSA:3.40.640.10 132 347 1.7E-62 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_18450 126c948f11c2aa1f9c50b5d1ea206635 458 SMART SM00345 19 78 9.3E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_18450 126c948f11c2aa1f9c50b5d1ea206635 458 SUPERFAMILY SSF46785 13 82 2.73E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_18450 126c948f11c2aa1f9c50b5d1ea206635 458 Gene3D G3DSA:3.90.1150.10 113 445 1.7E-62 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_18450 126c948f11c2aa1f9c50b5d1ea206635 458 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 78 3.2E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_18450 126c948f11c2aa1f9c50b5d1ea206635 458 Gene3D G3DSA:1.10.10.10 11 79 1.4E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_18450 126c948f11c2aa1f9c50b5d1ea206635 458 SUPERFAMILY SSF53383 83 449 6.81E-69 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 9.5E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 9.5E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 9.5E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 SMART SM00344 7 114 7.9E-46 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 SUPERFAMILY SSF46785 5 67 2.41E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 Pfam PF01037 Lrp/AsnC ligand binding domain 73 144 5.5E-18 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 Gene3D G3DSA:3.30.70.920 59 141 1.1E-34 T 14-10-2018 RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 SUPERFAMILY SSF54909 68 150 4.02E-19 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 Gene3D G3DSA:1.10.10.10 3 58 4.3E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21220 977c49e1f3c2e1835f90b99e01b7d524 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 6.6E-14 T 14-10-2018 RY45_16915 3b678f60eda5d4d4e5465b6a8a8d1422 308 Pfam PF01476 LysM domain 52 87 1.1E-4 T 14-10-2018 IPR018392 LysM domain RY45_16915 3b678f60eda5d4d4e5465b6a8a8d1422 308 Gene3D G3DSA:2.40.440.10 22 305 5.8E-88 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_16915 3b678f60eda5d4d4e5465b6a8a8d1422 308 SUPERFAMILY SSF141523 93 232 9.42E-27 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_16915 3b678f60eda5d4d4e5465b6a8a8d1422 308 Pfam PF03734 L,D-transpeptidase catalytic domain 99 230 4.1E-17 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RY45_18925 d38e6854b7ecdf5743efdbdce1cc972d 346 SUPERFAMILY SSF56349 79 323 2.74E-45 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_18925 d38e6854b7ecdf5743efdbdce1cc972d 346 Gene3D G3DSA:1.10.443.10 167 333 2.4E-49 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_18925 d38e6854b7ecdf5743efdbdce1cc972d 346 Pfam PF00589 Phage integrase family 256 315 1.4E-12 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_18925 d38e6854b7ecdf5743efdbdce1cc972d 346 Pfam PF00589 Phage integrase family 172 241 1.2E-7 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 158 172 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 SUPERFAMILY SSF51230 565 643 2.49E-19 T 14-10-2018 IPR011053 Single hybrid motif RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 SUPERFAMILY SSF51246 335 442 1.83E-28 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 Gene3D G3DSA:3.30.470.130 1 447 3.3E-182 T 14-10-2018 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 600 617 - T 14-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 Pfam PF02785 Biotin carboxylase C-terminal domain 340 442 1.6E-27 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 SMART SM00878 340 443 1.5E-42 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 120 326 6.2E-68 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 Gene3D G3DSA:2.40.50.100 578 644 3.4E-21 T 14-10-2018 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 Pfam PF00364 Biotin-requiring enzyme 580 642 1.1E-14 T 14-10-2018 IPR000089 Biotin/lipoyl attachment RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 Pfam PF00289 Biotin carboxylase, N-terminal domain 7 115 7.4E-45 T 14-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 SUPERFAMILY SSF52440 4 118 1.58E-47 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_12500 ff30eb1aa710261a57b15d6ff0d49b4d 654 SUPERFAMILY SSF56059 88 347 2.47E-62 T 14-10-2018 RY45_19275 55cd456611f4cbf924ee078432897d97 314 SUPERFAMILY SSF51735 101 279 8.02E-52 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_19275 55cd456611f4cbf924ee078432897d97 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 278 2.9E-53 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RY45_19275 55cd456611f4cbf924ee078432897d97 314 Gene3D G3DSA:3.40.50.720 20 306 1.3E-116 T 14-10-2018 RY45_19275 55cd456611f4cbf924ee078432897d97 314 Gene3D G3DSA:3.40.50.720 99 283 1.3E-116 T 14-10-2018 RY45_19275 55cd456611f4cbf924ee078432897d97 314 SUPERFAMILY SSF52283 43 125 1.13E-6 T 14-10-2018 RY45_15335 46774df2ce444c7597d7e6042678c813 345 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 267 6.2E-16 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_15335 46774df2ce444c7597d7e6042678c813 345 Gene3D G3DSA:2.40.30.170 44 274 6.7E-55 T 14-10-2018 RY45_15335 46774df2ce444c7597d7e6042678c813 345 Gene3D G3DSA:2.40.420.20 38 331 6.7E-55 T 14-10-2018 RY45_15335 46774df2ce444c7597d7e6042678c813 345 Gene3D G3DSA:1.10.287.470 90 161 6.7E-55 T 14-10-2018 RY45_15335 46774df2ce444c7597d7e6042678c813 345 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 336 9.3E-55 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_15335 46774df2ce444c7597d7e6042678c813 345 SUPERFAMILY SSF111369 45 275 1.7E-26 T 14-10-2018 RY45_15335 46774df2ce444c7597d7e6042678c813 345 Gene3D G3DSA:2.40.50.100 56 196 6.7E-55 T 14-10-2018 RY45_11095 7a668f4857aadbea813b7ded4ece36df 271 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 212 7.4E-22 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_11095 7a668f4857aadbea813b7ded4ece36df 271 Gene3D G3DSA:3.40.190.10 113 222 4.1E-26 T 14-10-2018 RY45_11095 7a668f4857aadbea813b7ded4ece36df 271 SUPERFAMILY SSF53850 32 247 1.04E-31 T 14-10-2018 RY45_11095 7a668f4857aadbea813b7ded4ece36df 271 SMART SM00062 31 255 0.0041 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_11095 7a668f4857aadbea813b7ded4ece36df 271 Gene3D G3DSA:3.40.190.10 38 244 4.1E-26 T 14-10-2018 RY45_11835 c9866c5ae9acdae5b7dc7bb8b6f56b10 171 Pfam PF03843 Outer membrane lipoprotein Slp family 15 164 1.2E-44 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 RY45_11835 c9866c5ae9acdae5b7dc7bb8b6f56b10 171 PIRSF PIRSF004982 1 171 1.4E-54 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 RY45_11835 c9866c5ae9acdae5b7dc7bb8b6f56b10 171 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 3 158 2.0E-28 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 RY45_04305 da14a50803ac0b3f304b1a8cff0232b2 648 Pfam PF02687 FtsX-like permease family 553 641 5.4E-12 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RY45_04305 da14a50803ac0b3f304b1a8cff0232b2 648 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_04305 da14a50803ac0b3f304b1a8cff0232b2 648 SMART SM00382 34 221 6.6E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_04305 da14a50803ac0b3f304b1a8cff0232b2 648 Pfam PF00005 ABC transporter 25 173 7.1E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_04305 da14a50803ac0b3f304b1a8cff0232b2 648 Gene3D G3DSA:3.40.50.300 4 241 2.1E-65 T 14-10-2018 RY45_04305 da14a50803ac0b3f304b1a8cff0232b2 648 SUPERFAMILY SSF52540 5 236 6.17E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04305 da14a50803ac0b3f304b1a8cff0232b2 648 Pfam PF12704 MacB-like periplasmic core domain 272 490 1.2E-36 T 14-10-2018 IPR025857 MacB-like periplasmic core domain RY45_01250 a02fe087be316b9b4aa3cf405c166bd7 69 Gene3D G3DSA:1.20.5.340 1 65 3.4E-23 T 14-10-2018 RY45_01250 a02fe087be316b9b4aa3cf405c166bd7 69 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 65 17.397 T 14-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 RY45_01250 a02fe087be316b9b4aa3cf405c166bd7 69 Pfam PF06005 Cell division protein ZapB 1 64 6.0E-23 T 14-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 RY45_04720 4a062319680ee273ccd60cd49934e54d 72 Pfam PF03889 Domain of unknown function 20 56 1.2E-22 T 14-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 RY45_20505 d6d908107dbc61d999359b159621400f 148 SUPERFAMILY SSF55804 1 146 2.62E-39 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_20505 d6d908107dbc61d999359b159621400f 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 146 1.6E-32 T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_20505 d6d908107dbc61d999359b159621400f 148 Gene3D G3DSA:3.40.930.10 1 148 3.0E-53 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_20505 d6d908107dbc61d999359b159621400f 148 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_20505 d6d908107dbc61d999359b159621400f 148 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 2 146 9.2E-50 T 14-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 294 327 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 219 233 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 SUPERFAMILY SSF51735 1 111 2.52E-22 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 204 1.9E-67 T 14-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 SUPERFAMILY SSF53790 212 453 2.09E-80 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Pfam PF13241 Putative NAD(P)-binding 6 113 2.9E-26 T 14-10-2018 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Pfam PF10414 Sirohaem synthase dimerisation region 148 204 1.4E-15 T 14-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Gene3D G3DSA:1.10.8.210 147 208 2.1E-11 T 14-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 216 426 2.6E-50 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Gene3D G3DSA:3.40.1010.10 213 329 4.4E-45 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 214 447 2.6E-93 T 14-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Gene3D G3DSA:3.30.160.110 111 146 7.3E-19 T 14-10-2018 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Gene3D G3DSA:3.30.950.10 330 465 4.1E-48 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 SUPERFAMILY SSF75615 112 202 1.83E-23 T 14-10-2018 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Pfam PF14824 Sirohaem biosynthesis protein central 119 143 4.5E-7 T 14-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Hamap MF_01646 Siroheme synthase [cysG]. 1 456 52.02 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 PIRSF PIRSF036426 1 463 1.7E-196 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_18335 142c6a0d9c8eb8a2f2ccbb9f47b94597 470 Gene3D G3DSA:3.40.50.720 1 110 2.4E-29 T 14-10-2018 RY45_06615 6c6715b87403424103081c1cec1eb471 351 Gene3D G3DSA:2.40.30.170 234 277 8.7E-37 T 14-10-2018 RY45_06615 6c6715b87403424103081c1cec1eb471 351 Pfam PF13437 HlyD family secretion protein 200 278 3.0E-5 T 14-10-2018 RY45_06615 6c6715b87403424103081c1cec1eb471 351 SUPERFAMILY SSF111369 182 247 5.23E-5 T 14-10-2018 RY45_06615 6c6715b87403424103081c1cec1eb471 351 SUPERFAMILY SSF111369 44 174 2.09E-12 T 14-10-2018 RY45_06615 6c6715b87403424103081c1cec1eb471 351 Pfam PF13533 Biotin-lipoyl like 44 88 1.8E-14 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RY45_06615 6c6715b87403424103081c1cec1eb471 351 Gene3D G3DSA:2.40.50.100 45 233 8.7E-37 T 14-10-2018 RY45_06615 6c6715b87403424103081c1cec1eb471 351 Gene3D G3DSA:1.10.287.470 77 199 8.7E-37 T 14-10-2018 RY45_19730 960527c2c6f52e1a5a4b3176f936e8af 322 Gene3D G3DSA:1.10.3720.10 28 318 1.2E-43 T 14-10-2018 IPR035906 MetI-like superfamily RY45_19730 960527c2c6f52e1a5a4b3176f936e8af 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 314 7.3E-15 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_19730 960527c2c6f52e1a5a4b3176f936e8af 322 SUPERFAMILY SSF161098 37 316 4.84E-45 T 14-10-2018 IPR035906 MetI-like superfamily RY45_01920 4f8c0f542836ada705401cd91679b13c 117 Gene3D G3DSA:3.30.420.100 1 117 2.3E-42 T 14-10-2018 RY45_01920 4f8c0f542836ada705401cd91679b13c 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 8.8E-42 T 14-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01920 4f8c0f542836ada705401cd91679b13c 117 SUPERFAMILY SSF53137 3 115 1.53E-49 T 14-10-2018 RY45_01920 4f8c0f542836ada705401cd91679b13c 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 25.178 T 14-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01920 4f8c0f542836ada705401cd91679b13c 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 1.5E-44 T 14-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 Pfam PF13291 ACT domain 659 735 4.0E-17 T 14-10-2018 IPR002912 ACT domain RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 SUPERFAMILY SSF81301 192 406 1.16E-64 T 14-10-2018 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 SUPERFAMILY SSF109604 23 203 2.26E-42 T 14-10-2018 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 Gene3D G3DSA:3.30.460.10 205 337 4.5E-50 T 14-10-2018 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 Pfam PF04607 Region found in RelA / SpoT proteins 247 356 3.8E-37 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 SUPERFAMILY SSF55021 663 735 7.4E-12 T 14-10-2018 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 Pfam PF02824 TGS domain 402 461 9.5E-20 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 Pfam PF13328 HD domain 50 187 7.8E-37 T 14-10-2018 IPR003607 HD/PDEase domain RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 SMART SM00954 247 357 1.4E-64 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 SUPERFAMILY SSF81271 395 461 4.8E-21 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 Gene3D G3DSA:3.30.70.260 659 736 1.2E-16 T 14-10-2018 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 58 735 5.2E-186 T 14-10-2018 IPR004811 RelA/SpoT family GO:0015969 RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 Gene3D G3DSA:3.10.20.30 396 469 3.0E-32 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_04590 f86ccc7cd181b368f714a1f0f9de2164 736 Gene3D G3DSA:1.10.3210.10 23 203 1.5E-38 T 14-10-2018 RY45_19300 9283ba09e63220d840665d290df35fe1 304 Gene3D G3DSA:3.40.50.1980 194 304 6.1E-37 T 14-10-2018 RY45_19300 9283ba09e63220d840665d290df35fe1 304 SUPERFAMILY SSF53807 20 303 1.08E-79 T 14-10-2018 RY45_19300 9283ba09e63220d840665d290df35fe1 304 Gene3D G3DSA:3.40.50.1980 21 193 4.1E-54 T 14-10-2018 RY45_19300 9283ba09e63220d840665d290df35fe1 304 PRINTS PR00690 Adhesin family signature 63 80 3.7E-6 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RY45_19300 9283ba09e63220d840665d290df35fe1 304 PRINTS PR00690 Adhesin family signature 246 264 3.7E-6 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RY45_19300 9283ba09e63220d840665d290df35fe1 304 PRINTS PR00690 Adhesin family signature 50 63 3.7E-6 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RY45_19300 9283ba09e63220d840665d290df35fe1 304 PRINTS PR00690 Adhesin family signature 19 37 3.7E-6 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RY45_19300 9283ba09e63220d840665d290df35fe1 304 Pfam PF01297 Zinc-uptake complex component A periplasmic 22 303 3.3E-62 T 14-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RY45_18890 37927e54f7223b853b24662ecee83595 257 Gene3D G3DSA:3.20.20.70 1 257 3.6E-98 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_18890 37927e54f7223b853b24662ecee83595 257 SUPERFAMILY SSF51569 5 243 2.3E-79 T 14-10-2018 RY45_18890 37927e54f7223b853b24662ecee83595 257 PIRSF PIRSF001357 5 251 1.7E-73 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RY45_18890 37927e54f7223b853b24662ecee83595 257 SMART SM01133 10 243 1.0E-77 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RY45_18890 37927e54f7223b853b24662ecee83595 257 Pfam PF01791 DeoC/LacD family aldolase 12 241 3.5E-46 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RY45_18890 37927e54f7223b853b24662ecee83595 257 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 226 2.3E-76 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RY45_18890 37927e54f7223b853b24662ecee83595 257 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 257 53.279 T 14-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 ProSitePatterns PS00552 MerR-type HTH domain signature. 9 31 - T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 SMART SM00422 6 74 6.4E-22 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 6 144 1.1E-59 T 14-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 SUPERFAMILY SSF46955 7 128 1.58E-26 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 Pfam PF09278 MerR, DNA binding 48 113 1.0E-14 T 14-10-2018 IPR015358 Transcription regulator MerR, DNA binding RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 18 31 8.1E-12 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 41 61 8.1E-12 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 7 18 8.1E-12 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 Pfam PF00376 MerR family regulatory protein 8 43 1.1E-11 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_14255 e7f43cbf13efeba33e66ed64587f6455 155 Gene3D G3DSA:1.10.1660.10 1 129 6.8E-33 T 14-10-2018 RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 389 8.3E-17 T 14-10-2018 IPR019489 Clp ATPase, C-terminal RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 SMART SM00382 111 333 3.2E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 Gene3D G3DSA:3.30.50.30 2 52 5.8E-26 T 14-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 Pfam PF06689 ClpX C4-type zinc finger 13 50 6.5E-21 T 14-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 SMART SM01086 317 412 9.8E-34 T 14-10-2018 IPR019489 Clp ATPase, C-terminal RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 SUPERFAMILY SSF57716 13 48 3.71E-12 T 14-10-2018 RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 Gene3D G3DSA:3.40.50.300 58 315 6.2E-107 T 14-10-2018 RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 11 411 3.2E-209 T 14-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 Gene3D G3DSA:1.10.8.60 316 424 9.0E-41 T 14-10-2018 RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 415 53.461 T 14-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 SUPERFAMILY SSF52540 62 403 2.93E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 SMART SM00994 12 51 7.4E-25 T 14-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RY45_12610 89be105ccff2f669fed4c7d6b2fc2ad9 424 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 5.9E-49 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_03475 f867ca5b4fb4eefa98237d09794e5b61 298 SUPERFAMILY SSF161098 32 282 1.27E-53 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03475 f867ca5b4fb4eefa98237d09794e5b61 298 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 32 287 1.5E-94 T 14-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RY45_03475 f867ca5b4fb4eefa98237d09794e5b61 298 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 33 289 9.1E-116 T 14-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 RY45_03475 f867ca5b4fb4eefa98237d09794e5b61 298 Gene3D G3DSA:1.10.3720.10 34 292 3.4E-59 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03475 f867ca5b4fb4eefa98237d09794e5b61 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 288 1.9E-13 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_19145 e99b6491a58dbd265dea46cc612d5c19 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 354 1.7E-69 T 14-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 RY45_19145 e99b6491a58dbd265dea46cc612d5c19 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 5.2E-132 T 14-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 RY45_00280 62069c1cdf8e8e3ab53441bbc571d973 224 SUPERFAMILY SSF49354 15 144 2.01E-8 T 14-10-2018 IPR008962 PapD-like superfamily RY45_00280 62069c1cdf8e8e3ab53441bbc571d973 224 Gene3D G3DSA:2.60.40.10 20 144 8.2E-7 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_00280 62069c1cdf8e8e3ab53441bbc571d973 224 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 20 147 1.1E-7 T 14-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 RY45_16165 c78646ca8129a4dfdeb56bcc3388b0e1 107 Pfam PF06291 Bor protein 29 105 1.9E-14 T 14-10-2018 IPR010438 Bor GO:0009279 RY45_16165 c78646ca8129a4dfdeb56bcc3388b0e1 107 ProDom PD020173 BOR LIPOPROTEIN PLASMID ISS HOMOLOG MEMBRANE FROM PRECURSOR PALMITATE DLP12 12 106 6.0E-14 T 14-10-2018 IPR010438 Bor GO:0009279 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 PIRSF PIRSF001267 1 495 7.5E-191 T 14-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 Gene3D G3DSA:3.30.420.150 110 288 4.5E-89 T 14-10-2018 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 SUPERFAMILY SSF53067 130 304 2.59E-44 T 14-10-2018 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 6 298 2.5E-100 T 14-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 SUPERFAMILY SSF109604 306 494 9.89E-51 T 14-10-2018 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 Gene3D G3DSA:3.30.420.40 7 296 4.5E-89 T 14-10-2018 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 Pfam PF02541 Ppx/GppA phosphatase family 19 300 2.7E-83 T 14-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 SUPERFAMILY SSF53067 5 126 1.57E-36 T 14-10-2018 RY45_08530 6e0d60bf01a73d5cf8f2a80c784deccc 496 Gene3D G3DSA:1.10.3210.10 303 495 5.0E-62 T 14-10-2018 RY45_03285 adc0814146319a9713fb878266f298d4 677 Gene3D G3DSA:3.30.1370.120 21 187 6.1E-55 T 14-10-2018 IPR038591 NolW-like superfamily RY45_03285 adc0814146319a9713fb878266f298d4 677 PRINTS PR00811 Bacterial general secretion pathway protein D signature 566 584 5.4E-42 T 14-10-2018 IPR001775 GspD/PilQ family RY45_03285 adc0814146319a9713fb878266f298d4 677 PRINTS PR00811 Bacterial general secretion pathway protein D signature 467 477 5.4E-42 T 14-10-2018 IPR001775 GspD/PilQ family RY45_03285 adc0814146319a9713fb878266f298d4 677 PRINTS PR00811 Bacterial general secretion pathway protein D signature 589 603 5.4E-42 T 14-10-2018 IPR001775 GspD/PilQ family RY45_03285 adc0814146319a9713fb878266f298d4 677 PRINTS PR00811 Bacterial general secretion pathway protein D signature 432 456 5.4E-42 T 14-10-2018 IPR001775 GspD/PilQ family RY45_03285 adc0814146319a9713fb878266f298d4 677 PRINTS PR00811 Bacterial general secretion pathway protein D signature 353 363 5.4E-42 T 14-10-2018 IPR001775 GspD/PilQ family RY45_03285 adc0814146319a9713fb878266f298d4 677 Gene3D G3DSA:3.30.1370.120 190 261 5.0E-19 T 14-10-2018 IPR038591 NolW-like superfamily RY45_03285 adc0814146319a9713fb878266f298d4 677 Pfam PF00263 Bacterial type II and III secretion system protein 436 602 7.8E-55 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 RY45_03285 adc0814146319a9713fb878266f298d4 677 Pfam PF03958 Bacterial type II/III secretion system short domain 193 261 1.5E-14 T 14-10-2018 IPR005644 NolW-like RY45_03285 adc0814146319a9713fb878266f298d4 677 Pfam PF03958 Bacterial type II/III secretion system short domain 269 353 2.9E-19 T 14-10-2018 IPR005644 NolW-like RY45_03285 adc0814146319a9713fb878266f298d4 677 Pfam PF03958 Bacterial type II/III secretion system short domain 127 190 6.9E-12 T 14-10-2018 IPR005644 NolW-like RY45_03285 adc0814146319a9713fb878266f298d4 677 Gene3D G3DSA:3.30.1370.120 262 354 3.4E-18 T 14-10-2018 IPR038591 NolW-like superfamily RY45_03285 adc0814146319a9713fb878266f298d4 677 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 547 580 - T 14-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 RY45_03285 adc0814146319a9713fb878266f298d4 677 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 31 610 5.7E-175 T 14-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 RY45_09635 cd1551448e401e776b238fb065fd1659 477 SUPERFAMILY SSF55785 154 276 1.01E-23 T 14-10-2018 IPR035965 PAS domain superfamily RY45_09635 cd1551448e401e776b238fb065fd1659 477 SMART SM00091 164 230 9.2E-10 T 14-10-2018 IPR000014 PAS domain RY45_09635 cd1551448e401e776b238fb065fd1659 477 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 167 284 1.0E-17 T 14-10-2018 IPR000014 PAS domain RY45_09635 cd1551448e401e776b238fb065fd1659 477 SMART SM00471 303 438 0.0021 T 14-10-2018 IPR003607 HD/PDEase domain RY45_09635 cd1551448e401e776b238fb065fd1659 477 Gene3D G3DSA:3.30.450.20 162 285 1.2E-23 T 14-10-2018 RY45_09635 cd1551448e401e776b238fb065fd1659 477 SUPERFAMILY SSF109604 287 467 6.85E-31 T 14-10-2018 RY45_09635 cd1551448e401e776b238fb065fd1659 477 Pfam PF13487 HD domain 360 420 2.7E-19 T 14-10-2018 RY45_09635 cd1551448e401e776b238fb065fd1659 477 Pfam PF08448 PAS fold 170 276 1.5E-16 T 14-10-2018 IPR013656 PAS fold-4 RY45_09635 cd1551448e401e776b238fb065fd1659 477 Gene3D G3DSA:1.10.3210.10 286 472 1.6E-58 T 14-10-2018 RY45_16335 dd288ede70820c42fe6436868ff00288 240 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 25 232 2.7E-57 T 14-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 RY45_16335 dd288ede70820c42fe6436868ff00288 240 Pfam PF04973 Nicotinamide mononucleotide transporter 25 228 1.1E-51 T 14-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 RY45_12025 8bb13e2ec3d85dd9b11481a9ec912e2a 405 SUPERFAMILY SSF53187 11 395 7.29E-53 T 14-10-2018 RY45_12025 8bb13e2ec3d85dd9b11481a9ec912e2a 405 Gene3D G3DSA:3.30.70.360 186 300 1.7E-64 T 14-10-2018 RY45_12025 8bb13e2ec3d85dd9b11481a9ec912e2a 405 Gene3D G3DSA:3.40.630.10 25 388 1.7E-64 T 14-10-2018 RY45_12025 8bb13e2ec3d85dd9b11481a9ec912e2a 405 TIGRFAM TIGR03526 selenium_YgeY: putative selenium metabolism hydrolase 7 400 4.4E-227 T 14-10-2018 IPR017706 Peptidase M20/DapE, YgeY RY45_12025 8bb13e2ec3d85dd9b11481a9ec912e2a 405 Pfam PF07687 Peptidase dimerisation domain 183 282 9.5E-17 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain RY45_12025 8bb13e2ec3d85dd9b11481a9ec912e2a 405 SUPERFAMILY SSF55031 186 287 2.99E-13 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RY45_12025 8bb13e2ec3d85dd9b11481a9ec912e2a 405 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 76 85 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RY45_12025 8bb13e2ec3d85dd9b11481a9ec912e2a 405 Pfam PF01546 Peptidase family M20/M25/M40 78 393 1.2E-23 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 RY45_04295 148813f9fabaae797ae9f6391bb23e53 226 SUPERFAMILY SSF46894 131 225 2.32E-23 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_04295 148813f9fabaae797ae9f6391bb23e53 226 Gene3D G3DSA:1.10.10.10 118 226 4.4E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04295 148813f9fabaae797ae9f6391bb23e53 226 Pfam PF00072 Response regulator receiver domain 3 111 3.9E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_04295 148813f9fabaae797ae9f6391bb23e53 226 SUPERFAMILY SSF52172 1 122 1.57E-36 T 14-10-2018 IPR011006 CheY-like superfamily RY45_04295 148813f9fabaae797ae9f6391bb23e53 226 SMART SM00448 1 111 5.1E-38 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_04295 148813f9fabaae797ae9f6391bb23e53 226 SMART SM00862 149 225 1.1E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_04295 148813f9fabaae797ae9f6391bb23e53 226 Gene3D G3DSA:3.40.50.2300 1 117 6.6E-32 T 14-10-2018 RY45_04295 148813f9fabaae797ae9f6391bb23e53 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 7.9E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_18040 94932ddae672222bada80793d5eed389 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 317 6.7E-125 T 14-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 RY45_18040 94932ddae672222bada80793d5eed389 321 PIRSF PIRSF006621 1 320 1.4E-103 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_18040 94932ddae672222bada80793d5eed389 321 Gene3D G3DSA:3.20.20.70 6 248 1.5E-78 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_18040 94932ddae672222bada80793d5eed389 321 SUPERFAMILY SSF51395 11 318 7.32E-90 T 14-10-2018 RY45_18040 94932ddae672222bada80793d5eed389 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 14-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_18040 94932ddae672222bada80793d5eed389 321 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.306 T 14-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 RY45_18040 94932ddae672222bada80793d5eed389 321 Pfam PF01207 Dihydrouridine synthase (Dus) 13 314 4.1E-105 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_15240 02174a90b92abaa0dd984ae25aaf72a3 185 Pfam PF05962 HutD 8 178 1.7E-42 T 14-10-2018 IPR010282 Uncharacterised protein family HutD/Ves RY45_15240 02174a90b92abaa0dd984ae25aaf72a3 185 SUPERFAMILY SSF51182 2 182 6.82E-40 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_15240 02174a90b92abaa0dd984ae25aaf72a3 185 Gene3D G3DSA:2.60.120.10 11 111 1.4E-34 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_15240 02174a90b92abaa0dd984ae25aaf72a3 185 Gene3D G3DSA:2.60.120.10 7 167 1.4E-34 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_16550 365a88731dda0189d79033a0781b8608 244 Gene3D G3DSA:3.10.20.30 1 105 1.8E-37 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_16550 365a88731dda0189d79033a0781b8608 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 9.7E-12 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_16550 365a88731dda0189d79033a0781b8608 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 9 228 2.3E-90 T 14-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16550 365a88731dda0189d79033a0781b8608 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 56 64 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RY45_16550 365a88731dda0189d79033a0781b8608 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_16550 365a88731dda0189d79033a0781b8608 244 Gene3D G3DSA:1.10.1060.10 106 244 1.2E-48 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_16550 365a88731dda0189d79033a0781b8608 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 7 110 1.5E-36 T 14-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16550 365a88731dda0189d79033a0781b8608 244 SUPERFAMILY SSF46548 106 229 6.1E-33 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_16550 365a88731dda0189d79033a0781b8608 244 SUPERFAMILY SSF54292 4 105 3.64E-32 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_18645 18843232866e787b7cd7edd66cf569c6 148 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 146 4.5E-24 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RY45_18645 18843232866e787b7cd7edd66cf569c6 148 TIGRFAM TIGR02801 tolR: protein TolR 12 145 1.3E-39 T 14-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 RY45_18645 18843232866e787b7cd7edd66cf569c6 148 Gene3D G3DSA:3.30.420.270 58 137 6.0E-22 T 14-10-2018 RY45_18645 18843232866e787b7cd7edd66cf569c6 148 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 3 145 27.768 T 14-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 RY45_17420 01b7252973152c320cdaf2f2a3fb85b3 176 Pfam PF00994 Probable molybdopterin binding domain 7 151 3.0E-33 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_17420 01b7252973152c320cdaf2f2a3fb85b3 176 Gene3D G3DSA:3.40.980.10 1 176 4.2E-66 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_17420 01b7252973152c320cdaf2f2a3fb85b3 176 SMART SM00852 7 153 6.2E-30 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_17420 01b7252973152c320cdaf2f2a3fb85b3 176 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 147 3.0E-41 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_17420 01b7252973152c320cdaf2f2a3fb85b3 176 SUPERFAMILY SSF53218 4 171 1.18E-47 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_17420 01b7252973152c320cdaf2f2a3fb85b3 176 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 14-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 RY45_06195 7061fcab13c5312a52228f8aca11f36a 451 Gene3D G3DSA:3.30.1850.10 1 118 4.2E-54 T 14-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 RY45_06195 7061fcab13c5312a52228f8aca11f36a 451 Pfam PF11892 Domain of unknown function (DUF3412) 330 450 1.5E-58 T 14-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 RY45_06195 7061fcab13c5312a52228f8aca11f36a 451 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 1.8E-50 T 14-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 RY45_06195 7061fcab13c5312a52228f8aca11f36a 451 SUPERFAMILY SSF102405 123 327 3.05E-40 T 14-10-2018 RY45_06195 7061fcab13c5312a52228f8aca11f36a 451 Gene3D G3DSA:3.40.50.450 119 449 5.0E-121 T 14-10-2018 RY45_06195 7061fcab13c5312a52228f8aca11f36a 451 Pfam PF03641 Possible lysine decarboxylase 187 325 8.7E-32 T 14-10-2018 IPR031100 LOG family RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.4E-21 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.4E-21 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 1.4E-21 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 1.4E-21 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.4E-21 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 1.4E-21 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 3.4E-75 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 3.4E-75 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 3.4E-75 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 3.4E-75 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 3.4E-75 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 3.4E-75 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 3.4E-75 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 3.4E-75 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 630 2.0E-85 T 14-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RY45_10540 972a608ea6b30db2765041aff4474ecf 653 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 630 1.6E-212 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 Pfam PF01578 Cytochrome C assembly protein 89 295 2.0E-47 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RY45_10540 972a608ea6b30db2765041aff4474ecf 653 TIGRFAM TIGR03145 cyt_nit_nrfE: cytochrome c nitrate reductase biogenesis protein NrfE 2 627 1.8E-297 T 14-10-2018 IPR017563 Cytochrome c nitrate reductase biogenesis protein NrfE RY45_21635 3306730492f0a5dac4d153cc3f134b29 375 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 9 369 3.5E-103 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RY45_21635 3306730492f0a5dac4d153cc3f134b29 375 Gene3D G3DSA:3.90.1150.10 260 374 1.6E-19 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_21635 3306730492f0a5dac4d153cc3f134b29 375 PIRSF PIRSF000390 1 374 8.4E-102 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RY45_21635 3306730492f0a5dac4d153cc3f134b29 375 SUPERFAMILY SSF53383 2 362 9.65E-104 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_21635 3306730492f0a5dac4d153cc3f134b29 375 Gene3D G3DSA:3.40.640.10 1 259 4.6E-93 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_21635 3306730492f0a5dac4d153cc3f134b29 375 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 1 368 3.0E-162 T 14-10-2018 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase RY45_14825 9cb9e9eeece7cd80a1f1fbff5d40577a 132 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RY45_14825 9cb9e9eeece7cd80a1f1fbff5d40577a 132 Pfam PF00460 Flagella basal body rod protein 12 39 5.2E-8 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_14825 9cb9e9eeece7cd80a1f1fbff5d40577a 132 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 129 3.8E-35 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RY45_14825 9cb9e9eeece7cd80a1f1fbff5d40577a 132 PIRSF PIRSF002889 1 131 3.0E-41 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RY45_04060 1a263083e84a652e12262b941bdbb6be 532 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 532 220.295 T 14-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RY45_04060 1a263083e84a652e12262b941bdbb6be 532 SUPERFAMILY SSF55931 11 522 9.81E-194 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RY45_04060 1a263083e84a652e12262b941bdbb6be 532 Pfam PF04262 Glutamate-cysteine ligase 14 386 3.5E-167 T 14-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RY45_04060 1a263083e84a652e12262b941bdbb6be 532 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 19 524 4.3E-201 T 14-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RY45_04060 1a263083e84a652e12262b941bdbb6be 532 Gene3D G3DSA:3.30.590.20 22 531 3.1E-188 T 14-10-2018 RY45_08305 23e4820afb2752efe365cb7ad90bfe13 484 Pfam PF00367 phosphotransferase system, EIIB 412 445 6.4E-13 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_08305 23e4820afb2752efe365cb7ad90bfe13 484 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 384 470 2.7E-21 T 14-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RY45_08305 23e4820afb2752efe365cb7ad90bfe13 484 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 423 440 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_08305 23e4820afb2752efe365cb7ad90bfe13 484 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 481 3.5E-215 T 14-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 RY45_08305 23e4820afb2752efe365cb7ad90bfe13 484 SUPERFAMILY SSF55604 409 482 8.63E-20 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_08305 23e4820afb2752efe365cb7ad90bfe13 484 Pfam PF02378 Phosphotransferase system, EIIC 12 324 1.5E-79 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_08305 23e4820afb2752efe365cb7ad90bfe13 484 Gene3D G3DSA:3.30.1360.60 405 484 5.7E-25 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_06955 00a333df40670f972e442108857094d3 387 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 342 365 6.6E-47 T 14-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 RY45_06955 00a333df40670f972e442108857094d3 387 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 214 235 6.6E-47 T 14-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 RY45_06955 00a333df40670f972e442108857094d3 387 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 315 335 6.6E-47 T 14-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 RY45_06955 00a333df40670f972e442108857094d3 387 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 236 254 6.6E-47 T 14-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 RY45_06955 00a333df40670f972e442108857094d3 387 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 263 281 6.6E-47 T 14-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 RY45_06955 00a333df40670f972e442108857094d3 387 SUPERFAMILY SSF51261 188 335 2.51E-18 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_06955 00a333df40670f972e442108857094d3 387 Gene3D G3DSA:2.70.70.10 210 387 2.5E-48 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_06955 00a333df40670f972e442108857094d3 387 Pfam PF01551 Peptidase family M23 256 335 2.3E-12 T 14-10-2018 IPR016047 Peptidase M23 RY45_11460 3a91d2b26c1f3024fb2bc3a07f001e57 186 Pfam PF07977 FabA-like domain 43 172 1.0E-52 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_11460 3a91d2b26c1f3024fb2bc3a07f001e57 186 SUPERFAMILY SSF54637 19 183 2.85E-58 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_11460 3a91d2b26c1f3024fb2bc3a07f001e57 186 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 19 185 2.7E-95 T 14-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_11460 3a91d2b26c1f3024fb2bc3a07f001e57 186 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 16 186 52.583 T 14-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_11460 3a91d2b26c1f3024fb2bc3a07f001e57 186 Gene3D G3DSA:3.10.129.10 17 186 8.0E-67 T 14-10-2018 RY45_03700 72f9c01ebb8c930814a980502ac0bc6a 541 Gene3D G3DSA:1.10.3720.10 9 267 6.7E-54 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03700 72f9c01ebb8c930814a980502ac0bc6a 541 SUPERFAMILY SSF161098 6 257 2.4E-42 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03700 72f9c01ebb8c930814a980502ac0bc6a 541 Gene3D G3DSA:1.10.3720.10 284 538 1.4E-33 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03700 72f9c01ebb8c930814a980502ac0bc6a 541 SUPERFAMILY SSF161098 284 534 1.21E-35 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03700 72f9c01ebb8c930814a980502ac0bc6a 541 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 66 250 2.7E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 Pfam PF00696 Amino acid kinase family 26 266 3.8E-26 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 441 222.279 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 SUPERFAMILY SSF53633 7 292 2.49E-65 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 PIRSF PIRSF000423 1 441 2.1E-199 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 SUPERFAMILY SSF55729 298 419 4.05E-18 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 9 440 4.4E-191 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 Gene3D G3DSA:3.40.630.30 296 442 4.2E-32 T 14-10-2018 RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 Gene3D G3DSA:3.40.1160.10 7 293 1.5E-84 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_13340 a6f4d3efd54fb66294ca336cebde7a50 442 Pfam PF00583 Acetyltransferase (GNAT) family 335 412 3.9E-9 T 14-10-2018 IPR000182 GNAT domain RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 SUPERFAMILY SSF46785 4 112 1.03E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 Pfam PF03466 LysR substrate binding domain 94 270 1.2E-15 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 Gene3D G3DSA:1.10.10.10 1 85 2.6E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 Gene3D G3DSA:3.40.190.290 90 295 1.5E-66 T 14-10-2018 RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 2.3E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 4 295 1.3E-112 T 14-10-2018 IPR017685 HTH-type transcriptional regulator ArgP RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.1E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.1E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.1E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03215 3775fe419046d30ba44daf687cd59ae7 299 SUPERFAMILY SSF53850 84 290 1.74E-21 T 14-10-2018 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 287 7.7E-110 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 SMART SM01130 1 290 4.1E-136 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 14-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 14-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 Gene3D G3DSA:3.20.20.70 1 292 2.1E-107 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 Pfam PF00701 Dihydrodipicolinate synthetase family 2 288 2.9E-105 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 PIRSF PIRSF001365 1 294 3.1E-91 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 4.4E-34 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 4.4E-34 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 4.4E-34 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 4.4E-34 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 288 63.285 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_04975 93c4f0e4ef002ac4db340f8a655ee9f3 295 SUPERFAMILY SSF51569 1 290 4.71E-98 T 14-10-2018 RY45_03975 e75c6ca0159a7bb2083be11dcc28ec17 163 Pfam PF11665 Protein of unknown function (DUF3265) 2 28 7.4E-10 T 14-10-2018 IPR021681 Protein of unknown function DUF3265 RY45_00060 8efad3d89d9376461c0a29ad37691651 375 SUPERFAMILY SSF103473 6 371 3.79E-43 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_00060 8efad3d89d9376461c0a29ad37691651 375 Pfam PF07690 Major Facilitator Superfamily 21 345 3.0E-31 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_00060 8efad3d89d9376461c0a29ad37691651 375 Gene3D G3DSA:1.20.1720.10 8 372 4.6E-70 T 14-10-2018 RY45_09785 6531222a6c5093445630762f48ee7ad5 312 SUPERFAMILY SSF53850 90 293 4.52E-32 T 14-10-2018 RY45_09785 6531222a6c5093445630762f48ee7ad5 312 Pfam PF03466 LysR substrate binding domain 90 287 1.5E-29 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_09785 6531222a6c5093445630762f48ee7ad5 312 Gene3D G3DSA:3.40.190.290 91 290 1.0E-47 T 14-10-2018 RY45_09785 6531222a6c5093445630762f48ee7ad5 312 Gene3D G3DSA:1.10.10.10 3 89 1.0E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09785 6531222a6c5093445630762f48ee7ad5 312 SUPERFAMILY SSF46785 7 112 4.94E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09785 6531222a6c5093445630762f48ee7ad5 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 9.0E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06925 fe01010c0268c72fe03ec6d1d4550a82 304 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 119 3.7E-14 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RY45_06925 fe01010c0268c72fe03ec6d1d4550a82 304 SUPERFAMILY SSF55347 121 262 6.54E-34 T 14-10-2018 RY45_06925 fe01010c0268c72fe03ec6d1d4550a82 304 Gene3D G3DSA:3.30.360.10 119 303 1.9E-46 T 14-10-2018 RY45_06925 fe01010c0268c72fe03ec6d1d4550a82 304 SUPERFAMILY SSF51735 1 133 7.75E-32 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_06925 fe01010c0268c72fe03ec6d1d4550a82 304 Gene3D G3DSA:3.40.50.720 1 118 4.4E-24 T 14-10-2018 RY45_21965 a45c24e853c0cf08ec48da478ebfd786 587 Gene3D G3DSA:3.40.50.2000 1 166 6.3E-22 T 14-10-2018 RY45_21965 a45c24e853c0cf08ec48da478ebfd786 587 Pfam PF13692 Glycosyl transferases group 1 170 260 1.5E-6 T 14-10-2018 RY45_21965 a45c24e853c0cf08ec48da478ebfd786 587 Gene3D G3DSA:3.40.50.2000 167 318 1.6E-7 T 14-10-2018 RY45_21965 a45c24e853c0cf08ec48da478ebfd786 587 Pfam PF13439 Glycosyltransferase Family 4 13 159 2.4E-24 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RY45_21965 a45c24e853c0cf08ec48da478ebfd786 587 SUPERFAMILY SSF53756 10 336 1.88E-36 T 14-10-2018 RY45_21965 a45c24e853c0cf08ec48da478ebfd786 587 SUPERFAMILY SSF88713 367 563 3.26E-37 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RY45_21965 a45c24e853c0cf08ec48da478ebfd786 587 Pfam PF01522 Polysaccharide deacetylase 406 542 5.2E-30 T 14-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RY45_21965 a45c24e853c0cf08ec48da478ebfd786 587 Gene3D G3DSA:3.20.20.370 340 578 1.1E-56 T 14-10-2018 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 SMART SM00304 158 210 4.8E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 SUPERFAMILY SSF55874 262 425 5.76E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_21765 b3602be19cf572b97102d91414fd94ec 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 2.6E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 2.6E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 365 2.6E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 379 2.6E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 Gene3D G3DSA:3.30.565.10 289 425 6.6E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_21765 b3602be19cf572b97102d91414fd94ec 441 SMART SM00387 316 425 7.6E-35 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_21765 b3602be19cf572b97102d91414fd94ec 441 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 271 1.9E-6 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 Gene3D G3DSA:1.10.287.130 162 273 1.1E-22 T 14-10-2018 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 Pfam PF00672 HAMP domain 162 207 3.2E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 316 423 3.7E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_21765 b3602be19cf572b97102d91414fd94ec 441 SUPERFAMILY SSF47384 195 272 1.37E-11 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 SUPERFAMILY SSF158472 161 208 9.02E-5 T 14-10-2018 RY45_21765 b3602be19cf572b97102d91414fd94ec 441 SMART SM00388 211 272 5.3E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_15255 47d03ad06cff600b1ef380c7c5d1b859 346 Pfam PF02424 ApbE family 37 320 1.6E-73 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RY45_15255 47d03ad06cff600b1ef380c7c5d1b859 346 Gene3D G3DSA:3.10.520.20 20 345 3.0E-103 T 14-10-2018 RY45_15255 47d03ad06cff600b1ef380c7c5d1b859 346 SUPERFAMILY SSF143631 30 341 5.49E-87 T 14-10-2018 IPR003374 ApbE-like superfamily RY45_15255 47d03ad06cff600b1ef380c7c5d1b859 346 PIRSF PIRSF006268 6 342 1.2E-79 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RY45_15320 1e6899731abe93606b7e8855c9e50aba 338 SUPERFAMILY SSF82649 249 335 1.41E-24 T 14-10-2018 RY45_15320 1e6899731abe93606b7e8855c9e50aba 338 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 250 333 3.6E-20 T 14-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 RY45_15320 1e6899731abe93606b7e8855c9e50aba 338 Gene3D G3DSA:3.30.930.10 3 249 6.8E-88 T 14-10-2018 RY45_15320 1e6899731abe93606b7e8855c9e50aba 338 Pfam PF03099 Biotin/lipoate A/B protein ligase family 52 158 1.7E-7 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RY45_15320 1e6899731abe93606b7e8855c9e50aba 338 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 5 325 3.2E-120 T 14-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 RY45_15320 1e6899731abe93606b7e8855c9e50aba 338 Gene3D G3DSA:3.30.390.50 250 338 2.4E-30 T 14-10-2018 RY45_15320 1e6899731abe93606b7e8855c9e50aba 338 Hamap MF_01602 Lipoate-protein ligase A [lplA]. 1 338 56.767 T 14-10-2018 IPR023741 Lipoate-protein ligase A GO:0009249|GO:0016979 KEGG: 00785+6.3.1.20 RY45_15320 1e6899731abe93606b7e8855c9e50aba 338 SUPERFAMILY SSF55681 4 247 2.65E-80 T 14-10-2018 RY45_15695 46e1095fd0c51654a269da4382540048 320 Pfam PF00990 Diguanylate cyclase, GGDEF domain 164 314 1.0E-41 T 14-10-2018 IPR000160 GGDEF domain RY45_15695 46e1095fd0c51654a269da4382540048 320 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 160 316 1.5E-41 T 14-10-2018 IPR000160 GGDEF domain RY45_15695 46e1095fd0c51654a269da4382540048 320 Gene3D G3DSA:3.30.450.20 47 153 4.8E-8 T 14-10-2018 RY45_15695 46e1095fd0c51654a269da4382540048 320 SUPERFAMILY SSF55073 167 317 2.2E-47 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_15695 46e1095fd0c51654a269da4382540048 320 SMART SM00267 151 318 5.7E-55 T 14-10-2018 IPR000160 GGDEF domain RY45_15695 46e1095fd0c51654a269da4382540048 320 Gene3D G3DSA:3.30.70.270 155 319 2.6E-53 T 14-10-2018 RY45_15695 46e1095fd0c51654a269da4382540048 320 SUPERFAMILY SSF55785 53 150 1.29E-6 T 14-10-2018 IPR035965 PAS domain superfamily RY45_19060 e17897e5df6914b9194cff28377de57c 159 Pfam PF05257 CHAP domain 41 115 1.1E-7 T 14-10-2018 IPR007921 CHAP domain RY45_19060 e17897e5df6914b9194cff28377de57c 159 TIGRFAM TIGR02594 TIGR02594: TIGR02594 family protein 5 135 6.0E-43 T 14-10-2018 IPR013423 Conserved hypothetical protein CHP02594 RY45_19060 e17897e5df6914b9194cff28377de57c 159 SUPERFAMILY SSF54001 46 135 8.34E-6 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RY45_02145 4a26b3f460186c64e1ec78cd8bda4402 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_02145 4a26b3f460186c64e1ec78cd8bda4402 222 SMART SM00382 27 214 2.1E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_02145 4a26b3f460186c64e1ec78cd8bda4402 222 Pfam PF00005 ABC transporter 18 165 3.5E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_02145 4a26b3f460186c64e1ec78cd8bda4402 222 SUPERFAMILY SSF52540 1 219 9.74E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02145 4a26b3f460186c64e1ec78cd8bda4402 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 4.8E-88 T 14-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 RY45_02145 4a26b3f460186c64e1ec78cd8bda4402 222 Gene3D G3DSA:3.40.50.300 1 221 7.3E-62 T 14-10-2018 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Gene3D G3DSA:1.10.268.10 370 493 3.2E-235 T 14-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 718 0.0 T 14-10-2018 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 879 24.731 T 14-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 1.2E-155 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 SMART SM00434 11 499 2.0E-300 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Gene3D G3DSA:3.30.1360.40 236 333 3.2E-235 T 14-10-2018 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 SUPERFAMILY SSF101904 533 709 1.16E-65 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RY45_11215 2829a0a7d13188f53a0723340186abc3 915 SUPERFAMILY SSF56719 30 521 7.06E-187 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Gene3D G3DSA:3.90.199.10 33 521 3.2E-235 T 14-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 SUPERFAMILY SSF101904 747 887 9.68E-41 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 8.9E-11 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 638 2.9E-12 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 3.7E-10 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 782 827 1.1E-14 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 831 877 6.0E-12 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 749 775 1.0E-5 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_11215 2829a0a7d13188f53a0723340186abc3 915 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 708 1.0 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RY45_06725 a9a7bd35242b89b01ad8e68f8b9924dc 293 Pfam PF00005 ABC transporter 21 155 2.6E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_06725 a9a7bd35242b89b01ad8e68f8b9924dc 293 Gene3D G3DSA:3.40.50.300 1 227 5.1E-64 T 14-10-2018 RY45_06725 a9a7bd35242b89b01ad8e68f8b9924dc 293 SMART SM00382 29 203 1.2E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_06725 a9a7bd35242b89b01ad8e68f8b9924dc 293 SUPERFAMILY SSF52540 4 217 3.0E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06725 a9a7bd35242b89b01ad8e68f8b9924dc 293 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17800 dc87412b0f76faa9a721ce33cb0b2634 344 Gene3D G3DSA:2.40.50.140 35 99 5.9E-20 T 14-10-2018 RY45_17800 dc87412b0f76faa9a721ce33cb0b2634 344 Gene3D G3DSA:1.10.40.50 272 343 3.9E-24 T 14-10-2018 RY45_17800 dc87412b0f76faa9a721ce33cb0b2634 344 Pfam PF03193 RsgA GTPase 97 272 4.3E-58 T 14-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 RY45_17800 dc87412b0f76faa9a721ce33cb0b2634 344 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 40 336 37.84 T 14-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 RY45_17800 dc87412b0f76faa9a721ce33cb0b2634 344 Gene3D G3DSA:3.40.50.300 100 271 5.3E-52 T 14-10-2018 RY45_17800 dc87412b0f76faa9a721ce33cb0b2634 344 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 74 330 5.3E-87 T 14-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 RY45_17800 dc87412b0f76faa9a721ce33cb0b2634 344 SUPERFAMILY SSF52540 111 334 1.69E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12100 3e32cd713a1c2621b061972de19db01e 171 Gene3D G3DSA:1.10.10.10 80 163 2.8E-16 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_12100 3e32cd713a1c2621b061972de19db01e 171 Pfam PF08281 Sigma-70, region 4 103 154 5.7E-13 T 14-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_12100 3e32cd713a1c2621b061972de19db01e 171 SUPERFAMILY SSF88659 97 160 9.81E-14 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_12100 3e32cd713a1c2621b061972de19db01e 171 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 33 64 - T 14-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_12100 3e32cd713a1c2621b061972de19db01e 171 Pfam PF04542 Sigma-70 region 2 11 77 4.4E-16 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RY45_12100 3e32cd713a1c2621b061972de19db01e 171 SUPERFAMILY SSF88946 4 91 1.18E-19 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RY45_12100 3e32cd713a1c2621b061972de19db01e 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 159 1.3E-23 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RY45_12100 3e32cd713a1c2621b061972de19db01e 171 Gene3D G3DSA:1.10.1740.10 1 73 3.7E-18 T 14-10-2018 RY45_00970 3ea4f2aea0d297d0c007a3113ee3dc42 412 Pfam PF01547 Bacterial extracellular solute-binding protein 53 283 2.8E-14 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein RY45_00970 3ea4f2aea0d297d0c007a3113ee3dc42 412 SUPERFAMILY SSF53850 19 407 8.83E-49 T 14-10-2018 RY45_00970 3ea4f2aea0d297d0c007a3113ee3dc42 412 Gene3D G3DSA:3.40.190.10 21 368 5.7E-145 T 14-10-2018 RY45_00970 3ea4f2aea0d297d0c007a3113ee3dc42 412 Gene3D G3DSA:3.40.190.10 136 393 5.7E-145 T 14-10-2018 RY45_07800 3d99790430796497cae10532b7cbe56e 105 Gene3D G3DSA:3.30.40.190 1 97 3.5E-11 T 14-10-2018 IPR038439 Ref-like superfamily RY45_07800 3d99790430796497cae10532b7cbe56e 105 Pfam PF16786 Recombination enhancement, RecA-dependent nuclease 6 72 2.7E-12 T 14-10-2018 IPR031875 Recombination enhancement, RecA-dependent nuclease RY45_14285 1f6777a631ad787504083b177b21c62d 177 SUPERFAMILY SSF55729 5 164 1.49E-39 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_14285 1f6777a631ad787504083b177b21c62d 177 Gene3D G3DSA:3.40.630.30 6 173 6.0E-48 T 14-10-2018 RY45_14285 1f6777a631ad787504083b177b21c62d 177 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 2.1E-21 T 14-10-2018 IPR000182 GNAT domain RY45_03225 f0c1da622781904ba320d647686d1778 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 3.2E-9 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03225 f0c1da622781904ba320d647686d1778 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 3.2E-9 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03225 f0c1da622781904ba320d647686d1778 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 3.2E-9 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03225 f0c1da622781904ba320d647686d1778 260 SUPERFAMILY SSF75516 4 171 9.29E-37 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily RY45_03225 f0c1da622781904ba320d647686d1778 260 SUPERFAMILY SSF46894 163 242 5.1E-17 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_03225 f0c1da622781904ba320d647686d1778 260 Pfam PF03472 Autoinducer binding domain 20 165 4.7E-32 T 14-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RY45_03225 f0c1da622781904ba320d647686d1778 260 SMART SM00421 180 237 3.8E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03225 f0c1da622781904ba320d647686d1778 260 Pfam PF00196 Bacterial regulatory proteins, luxR family 182 235 5.7E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03225 f0c1da622781904ba320d647686d1778 260 Gene3D G3DSA:3.30.450.80 2 172 2.4E-43 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily RY45_03225 f0c1da622781904ba320d647686d1778 260 Gene3D G3DSA:1.10.10.10 178 243 5.4E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10715 e1f87ba3f3075aa0fac361734cefaeb6 162 Gene3D G3DSA:3.40.50.300 30 136 8.2E-18 T 14-10-2018 RY45_10715 e1f87ba3f3075aa0fac361734cefaeb6 162 SUPERFAMILY SSF52540 41 139 2.23E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08140 836c2838ce61f22606ef3f4ee3a5b6ce 570 SMART SM00283 308 569 4.3E-77 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08140 836c2838ce61f22606ef3f4ee3a5b6ce 570 Gene3D G3DSA:1.10.287.950 243 570 5.1E-70 T 14-10-2018 RY45_08140 836c2838ce61f22606ef3f4ee3a5b6ce 570 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 383 536 3.7E-47 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08140 836c2838ce61f22606ef3f4ee3a5b6ce 570 SUPERFAMILY SSF58104 279 570 9.42E-69 T 14-10-2018 RY45_03970 180b890044e6ece65ef17e500c17b270 797 ProSitePatterns PS01175 Ribonuclease II family signature. 556 580 - T 14-10-2018 IPR022966 Ribonuclease II/R, conserved site RY45_03970 180b890044e6ece65ef17e500c17b270 797 SUPERFAMILY SSF50249 139 237 9.33E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03970 180b890044e6ece65ef17e500c17b270 797 Hamap MF_01895 Ribonuclease R [rnr]. 39 728 57.026 T 14-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RY45_03970 180b890044e6ece65ef17e500c17b270 797 SMART SM00316 645 728 1.3E-14 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_03970 180b890044e6ece65ef17e500c17b270 797 Pfam PF00575 S1 RNA binding domain 645 725 2.8E-13 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_03970 180b890044e6ece65ef17e500c17b270 797 SMART SM00955 261 589 4.0E-184 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RY45_03970 180b890044e6ece65ef17e500c17b270 797 SUPERFAMILY SSF50249 221 645 1.77E-143 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03970 180b890044e6ece65ef17e500c17b270 797 Pfam PF08206 Ribonuclease B OB domain 88 144 2.1E-19 T 14-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain RY45_03970 180b890044e6ece65ef17e500c17b270 797 Pfam PF00773 RNB domain 261 585 2.3E-104 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RY45_03970 180b890044e6ece65ef17e500c17b270 797 Gene3D G3DSA:2.40.50.140 75 149 4.8E-15 T 14-10-2018 RY45_03970 180b890044e6ece65ef17e500c17b270 797 SMART SM00357 87 146 8.4E-10 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 RY45_03970 180b890044e6ece65ef17e500c17b270 797 Pfam PF08461 Ribonuclease R winged-helix domain 23 82 3.6E-14 T 14-10-2018 IPR013668 Ribonuclease R winged-helix domain RY45_03970 180b890044e6ece65ef17e500c17b270 797 SUPERFAMILY SSF50249 646 740 3.17E-22 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03970 180b890044e6ece65ef17e500c17b270 797 SUPERFAMILY SSF50249 68 147 5.02E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_03970 180b890044e6ece65ef17e500c17b270 797 TIGRFAM TIGR02063 RNase_R: ribonuclease R 20 729 5.5E-271 T 14-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RY45_03970 180b890044e6ece65ef17e500c17b270 797 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 68 728 7.5E-252 T 14-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 RY45_03970 180b890044e6ece65ef17e500c17b270 797 Gene3D G3DSA:2.40.50.140 648 775 4.1E-25 T 14-10-2018 RY45_20380 5b58f0325cf9b45d9a191dfcca9b32d0 123 SUPERFAMILY SSF52980 14 119 7.4E-21 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RY45_20380 5b58f0325cf9b45d9a191dfcca9b32d0 123 Gene3D G3DSA:3.40.1350.10 19 123 3.0E-35 T 14-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 RY45_20380 5b58f0325cf9b45d9a191dfcca9b32d0 123 Hamap MF_00048 UPF0102 protein YraN [yraN]. 12 123 21.176 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 RY45_20380 5b58f0325cf9b45d9a191dfcca9b32d0 123 Pfam PF02021 Uncharacterised protein family UPF0102 20 110 5.1E-28 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 RY45_20380 5b58f0325cf9b45d9a191dfcca9b32d0 123 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 14 123 7.5E-35 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 5 176 4.5E-60 T 14-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 PRINTS PR00885 Bacterial general secretion pathway protein H signature 4 18 1.2E-17 T 14-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 PRINTS PR00885 Bacterial general secretion pathway protein H signature 19 33 1.2E-17 T 14-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 PRINTS PR00885 Bacterial general secretion pathway protein H signature 135 150 1.2E-17 T 14-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 7.1E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 SUPERFAMILY SSF54523 9 83 3.06E-10 T 14-10-2018 RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 Gene3D G3DSA:3.55.40.10 38 183 6.9E-38 T 14-10-2018 RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 Pfam PF12019 Type II transport protein GspH 44 160 1.0E-9 T 14-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 RY45_03305 535b417956ae9e50d46ca9f21881e3d8 183 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 2.7E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03600 c019d979fce02e8f85179942c52f005b 270 SUPERFAMILY SSF53850 35 254 1.23E-14 T 14-10-2018 RY45_03600 c019d979fce02e8f85179942c52f005b 270 Gene3D G3DSA:3.40.190.10 56 247 4.2E-6 T 14-10-2018 RY45_03600 c019d979fce02e8f85179942c52f005b 270 Gene3D G3DSA:3.40.190.10 122 211 4.2E-6 T 14-10-2018 RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 Gene3D G3DSA:2.40.50.140 297 354 2.0E-36 T 14-10-2018 RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 Gene3D G3DSA:2.40.50.940 231 363 2.0E-36 T 14-10-2018 RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 SUPERFAMILY SSF50331 245 369 9.36E-29 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 SUPERFAMILY SSF52540 5 250 2.96E-81 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 SMART SM00382 31 213 1.2E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 Pfam PF00005 ABC transporter 22 164 1.7E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 Gene3D G3DSA:3.40.50.300 4 230 2.4E-62 T 14-10-2018 RY45_09140 3e57dba65c1d99d7b5b45add88c2edb2 378 Pfam PF08402 TOBE domain 290 362 1.6E-9 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 SUPERFAMILY SSF51905 8 312 2.36E-33 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 Gene3D G3DSA:3.50.50.60 118 251 9.4E-76 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 Hamap MF_01313 Nitric oxide reductase FlRd-NAD(+) reductase [norW]. 11 388 55.5 T 14-10-2018 IPR023961 Nitric oxide reductase FlRd-NAD(+) reductase GO:0016731|GO:0055114 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 Gene3D G3DSA:3.50.50.60 16 287 9.4E-76 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 Gene3D G3DSA:3.30.390.120 324 386 1.1E-8 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 1.6E-20 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 1.6E-20 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 1.6E-20 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 1.6E-20 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 15 34 1.6E-20 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 14 286 2.2E-46 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 3.1E-14 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 3.1E-14 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 286 3.1E-14 T 14-10-2018 RY45_00875 850edb974dd0a32ab10b3a85757270eb 388 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 3.1E-14 T 14-10-2018 RY45_05640 bdd2adb395632508a07710f4f485fe70 156 Pfam PF03975 CheD chemotactic sensory transduction 46 149 1.7E-25 T 14-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RY45_05640 bdd2adb395632508a07710f4f485fe70 156 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 5 154 21.338 T 14-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RY45_05640 bdd2adb395632508a07710f4f485fe70 156 Gene3D G3DSA:3.30.1330.200 2 155 8.1E-46 T 14-10-2018 IPR038592 CheD-like superfamily RY45_05640 bdd2adb395632508a07710f4f485fe70 156 SUPERFAMILY SSF64438 3 153 8.24E-43 T 14-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic RY45_04145 636999ef468caf385d6f3adc7abd0721 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.5E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04145 636999ef468caf385d6f3adc7abd0721 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.5E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04145 636999ef468caf385d6f3adc7abd0721 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.5E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04145 636999ef468caf385d6f3adc7abd0721 317 SUPERFAMILY SSF46785 2 84 1.2E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_04145 636999ef468caf385d6f3adc7abd0721 317 Pfam PF03466 LysR substrate binding domain 95 312 6.6E-21 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_04145 636999ef468caf385d6f3adc7abd0721 317 SUPERFAMILY SSF53850 90 313 3.08E-34 T 14-10-2018 RY45_04145 636999ef468caf385d6f3adc7abd0721 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 5.6E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04145 636999ef468caf385d6f3adc7abd0721 317 Gene3D G3DSA:3.40.190.10 90 305 1.1E-54 T 14-10-2018 RY45_04145 636999ef468caf385d6f3adc7abd0721 317 Gene3D G3DSA:1.10.10.10 1 88 6.7E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04145 636999ef468caf385d6f3adc7abd0721 317 Gene3D G3DSA:3.40.190.10 173 285 1.1E-54 T 14-10-2018 RY45_11130 a18868d3e493bedafedc86c1cf7d257b 329 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 247 260 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RY45_11130 a18868d3e493bedafedc86c1cf7d257b 329 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 3 307 1.1E-105 T 14-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 RY45_11130 a18868d3e493bedafedc86c1cf7d257b 329 PIRSF PIRSF000535 1 309 1.4E-97 T 14-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RY45_11130 a18868d3e493bedafedc86c1cf7d257b 329 SUPERFAMILY SSF53613 3 289 2.34E-69 T 14-10-2018 IPR029056 Ribokinase-like RY45_11130 a18868d3e493bedafedc86c1cf7d257b 329 Gene3D G3DSA:3.40.1190.20 1 309 3.1E-98 T 14-10-2018 IPR029056 Ribokinase-like RY45_11130 a18868d3e493bedafedc86c1cf7d257b 329 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 37 61 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RY45_11130 a18868d3e493bedafedc86c1cf7d257b 329 Pfam PF00294 pfkB family carbohydrate kinase 10 292 2.9E-53 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB RY45_11130 a18868d3e493bedafedc86c1cf7d257b 329 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 3 307 3.9E-106 T 14-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RY45_08240 39a0a29c29494f09e1cbf4381bef744e 200 Gene3D G3DSA:3.40.30.10 1 197 1.6E-75 T 14-10-2018 RY45_08240 39a0a29c29494f09e1cbf4381bef744e 200 PIRSF PIRSF000239 1 198 2.6E-61 T 14-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_08240 39a0a29c29494f09e1cbf4381bef744e 200 Pfam PF00578 AhpC/TSA family 4 139 2.4E-34 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_08240 39a0a29c29494f09e1cbf4381bef744e 200 SUPERFAMILY SSF52833 1 194 1.72E-68 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_08240 39a0a29c29494f09e1cbf4381bef744e 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 7.0E-13 T 14-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 PIRSF PIRSF039144 1 112 6.6E-54 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.8E-42 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 SUPERFAMILY SSF54913 1 112 1.3E-44 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 PRINTS PR00340 P-II protein signature 2 17 5.6E-41 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 PRINTS PR00340 P-II protein signature 52 75 5.6E-41 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 PRINTS PR00340 P-II protein signature 23 41 5.6E-41 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 PRINTS PR00340 P-II protein signature 83 103 5.6E-41 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 Gene3D G3DSA:3.30.70.120 1 112 3.8E-45 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 14-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 14-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RY45_03690 0528f5e76a58b830c4961760c7dace1a 112 SMART SM00938 4 105 5.1E-67 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RY45_00105 e408b3b7140e6e058ebfedf58441f9ac 368 Gene3D G3DSA:2.40.30.170 57 279 2.5E-73 T 14-10-2018 RY45_00105 e408b3b7140e6e058ebfedf58441f9ac 368 Pfam PF00529 HlyD membrane-fusion protein of T1SS 270 339 7.8E-7 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_00105 e408b3b7140e6e058ebfedf58441f9ac 368 Gene3D G3DSA:2.40.50.100 68 196 2.5E-73 T 14-10-2018 RY45_00105 e408b3b7140e6e058ebfedf58441f9ac 368 Gene3D G3DSA:1.10.287.470 103 162 2.5E-73 T 14-10-2018 RY45_00105 e408b3b7140e6e058ebfedf58441f9ac 368 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 353 1.6E-78 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_00105 e408b3b7140e6e058ebfedf58441f9ac 368 SUPERFAMILY SSF111369 57 273 1.02E-36 T 14-10-2018 RY45_00105 e408b3b7140e6e058ebfedf58441f9ac 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 269 4.7E-27 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_00105 e408b3b7140e6e058ebfedf58441f9ac 368 Gene3D G3DSA:2.40.420.20 280 351 2.5E-73 T 14-10-2018 RY45_14635 1f8e4f713b91fe136a77684c48f7772e 258 Pfam PF12697 Alpha/beta hydrolase family 23 247 1.7E-18 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_14635 1f8e4f713b91fe136a77684c48f7772e 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 7.4E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_14635 1f8e4f713b91fe136a77684c48f7772e 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 7.4E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_14635 1f8e4f713b91fe136a77684c48f7772e 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 101 7.4E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_14635 1f8e4f713b91fe136a77684c48f7772e 258 Gene3D G3DSA:3.40.50.1820 6 256 4.8E-48 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_14635 1f8e4f713b91fe136a77684c48f7772e 258 SUPERFAMILY SSF53474 12 256 1.23E-47 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_11710 cefa34fe9e34617066689007164e84d2 397 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 171 339 7.5E-31 T 14-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 RY45_11710 cefa34fe9e34617066689007164e84d2 397 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 397 71.949 T 14-10-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 RY45_11710 cefa34fe9e34617066689007164e84d2 397 SUPERFAMILY SSF88697 4 72 1.82E-17 T 14-10-2018 IPR015947 PUA-like superfamily RY45_11710 cefa34fe9e34617066689007164e84d2 397 SUPERFAMILY SSF53335 79 393 3.26E-78 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_11710 cefa34fe9e34617066689007164e84d2 397 Gene3D G3DSA:3.40.50.150 182 396 3.5E-77 T 14-10-2018 RY45_11710 cefa34fe9e34617066689007164e84d2 397 Gene3D G3DSA:3.30.750.80 73 181 1.3E-36 T 14-10-2018 RY45_11710 cefa34fe9e34617066689007164e84d2 397 SMART SM00359 3 88 1.1E-13 T 14-10-2018 IPR002478 PUA domain GO:0003723 RY45_11710 cefa34fe9e34617066689007164e84d2 397 Gene3D G3DSA:2.30.130.10 1 72 1.6E-28 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 RY45_05550 4d78bcdf0799401da887a5788f29a776 513 Gene3D G3DSA:3.20.20.450 258 509 3.7E-84 T 14-10-2018 IPR035919 EAL domain superfamily RY45_05550 4d78bcdf0799401da887a5788f29a776 513 SUPERFAMILY SSF141868 262 508 2.88E-77 T 14-10-2018 IPR035919 EAL domain superfamily RY45_05550 4d78bcdf0799401da887a5788f29a776 513 SMART SM00052 256 502 1.3E-96 T 14-10-2018 IPR001633 EAL domain RY45_05550 4d78bcdf0799401da887a5788f29a776 513 Pfam PF12792 CSS motif domain associated with EAL 41 230 7.8E-35 T 14-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain RY45_05550 4d78bcdf0799401da887a5788f29a776 513 Pfam PF00563 EAL domain 262 497 6.1E-64 T 14-10-2018 IPR001633 EAL domain RY45_03135 223303f162c1591cd2c3dbff3168d631 401 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 82 1.4E-16 T 14-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 RY45_03135 223303f162c1591cd2c3dbff3168d631 401 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 400 3.6E-58 T 14-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 RY45_05800 5a052a9c945b8dc5619e8c5506e7bef6 419 TIGRFAM TIGR01748 rhaA: L-rhamnose isomerase 5 418 7.8E-221 T 14-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 RY45_05800 5a052a9c945b8dc5619e8c5506e7bef6 419 SUPERFAMILY SSF51658 4 414 4.02E-82 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily RY45_05800 5a052a9c945b8dc5619e8c5506e7bef6 419 Gene3D G3DSA:3.20.20.150 1 419 1.4E-179 T 14-10-2018 RY45_05800 5a052a9c945b8dc5619e8c5506e7bef6 419 Pfam PF06134 L-rhamnose isomerase (RhaA) 4 418 9.0E-216 T 14-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 RY45_05800 5a052a9c945b8dc5619e8c5506e7bef6 419 Hamap MF_00541 L-rhamnose isomerase [rhaA]. 1 419 256.638 T 14-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 RY45_05800 5a052a9c945b8dc5619e8c5506e7bef6 419 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 11 419 0.0 T 14-10-2018 RY45_05670 99c8afb8de2876423bb09d510f9873ac 108 Pfam PF13466 STAS domain 14 90 2.1E-15 T 14-10-2018 IPR002645 STAS domain RY45_05670 99c8afb8de2876423bb09d510f9873ac 108 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 3 96 5.2E-17 T 14-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RY45_05670 99c8afb8de2876423bb09d510f9873ac 108 Gene3D G3DSA:3.30.750.24 2 104 5.7E-20 T 14-10-2018 IPR036513 STAS domain superfamily RY45_05670 99c8afb8de2876423bb09d510f9873ac 108 SUPERFAMILY SSF52091 1 96 2.16E-18 T 14-10-2018 IPR036513 STAS domain superfamily RY45_11075 1f57f9d8eb8a4d22735c8eece8de7213 136 Gene3D G3DSA:3.30.530.20 1 135 7.3E-38 T 14-10-2018 IPR023393 START-like domain superfamily RY45_11075 1f57f9d8eb8a4d22735c8eece8de7213 136 SUPERFAMILY SSF55961 2 133 8.04E-28 T 14-10-2018 RY45_11075 1f57f9d8eb8a4d22735c8eece8de7213 136 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 133 3.3E-17 T 14-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RY45_08065 55f21bbc909573d0c85ab85b146a15a9 303 SUPERFAMILY SSF53850 91 293 7.24E-34 T 14-10-2018 RY45_08065 55f21bbc909573d0c85ab85b146a15a9 303 Pfam PF03466 LysR substrate binding domain 94 292 5.2E-19 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_08065 55f21bbc909573d0c85ab85b146a15a9 303 Gene3D G3DSA:3.40.190.10 92 290 4.7E-48 T 14-10-2018 RY45_08065 55f21bbc909573d0c85ab85b146a15a9 303 Gene3D G3DSA:1.10.10.10 1 86 1.4E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_08065 55f21bbc909573d0c85ab85b146a15a9 303 Gene3D G3DSA:3.40.190.10 170 268 4.7E-48 T 14-10-2018 RY45_08065 55f21bbc909573d0c85ab85b146a15a9 303 SUPERFAMILY SSF46785 2 84 7.88E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08065 55f21bbc909573d0c85ab85b146a15a9 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.2E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_13740 e886a1464cab33e455cfa3a044fad60c 308 Pfam PF01545 Cation efflux family 19 217 6.2E-32 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RY45_13740 e886a1464cab33e455cfa3a044fad60c 308 Gene3D G3DSA:1.20.1510.10 15 219 1.1E-25 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RY45_13740 e886a1464cab33e455cfa3a044fad60c 308 SUPERFAMILY SSF161111 14 219 9.81E-35 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RY45_10115 ec518f87c05722939a093320cd99611b 343 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 100 336 5.8E-75 T 14-10-2018 IPR006507 Uncharacterised protein family UPF0283 RY45_10115 ec518f87c05722939a093320cd99611b 343 Pfam PF05128 Domain of unknown function (DUF697) 178 336 1.9E-54 T 14-10-2018 IPR021147 Protein of unknown function DUF697 RY45_14200 9fced5eb215513492275650b722d24e2 472 Gene3D G3DSA:2.40.50.100 324 360 1.9E-14 T 14-10-2018 RY45_14200 9fced5eb215513492275650b722d24e2 472 Gene3D G3DSA:2.40.50.100 77 111 9.8E-10 T 14-10-2018 RY45_14200 9fced5eb215513492275650b722d24e2 472 Pfam PF13533 Biotin-lipoyl like 87 116 2.8E-7 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RY45_14200 9fced5eb215513492275650b722d24e2 472 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 90 110 7.6E-50 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RY45_14200 9fced5eb215513492275650b722d24e2 472 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 48 71 7.6E-50 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RY45_14200 9fced5eb215513492275650b722d24e2 472 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 451 471 7.6E-50 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RY45_14200 9fced5eb215513492275650b722d24e2 472 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 393 416 7.6E-50 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RY45_14200 9fced5eb215513492275650b722d24e2 472 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 336 357 7.6E-50 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RY45_14200 9fced5eb215513492275650b722d24e2 472 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 369 393 7.6E-50 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RY45_14200 9fced5eb215513492275650b722d24e2 472 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 436 451 7.6E-50 T 14-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RY45_14200 9fced5eb215513492275650b722d24e2 472 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 39 472 1.6E-133 T 14-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RY45_14200 9fced5eb215513492275650b722d24e2 472 Gene3D G3DSA:1.10.287.470 112 140 9.8E-10 T 14-10-2018 RY45_14200 9fced5eb215513492275650b722d24e2 472 Gene3D G3DSA:1.10.287.470 201 323 1.9E-14 T 14-10-2018 RY45_14200 9fced5eb215513492275650b722d24e2 472 Gene3D G3DSA:2.40.30.170 66 76 9.8E-10 T 14-10-2018 RY45_14200 9fced5eb215513492275650b722d24e2 472 Gene3D G3DSA:2.40.30.170 361 449 1.9E-14 T 14-10-2018 RY45_14200 9fced5eb215513492275650b722d24e2 472 Pfam PF13437 HlyD family secretion protein 324 430 1.8E-17 T 14-10-2018 RY45_14200 9fced5eb215513492275650b722d24e2 472 ProSitePatterns PS00543 HlyD family secretion proteins signature. 436 458 - T 14-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 RY45_14200 9fced5eb215513492275650b722d24e2 472 SUPERFAMILY SSF111369 71 141 3.4E-6 T 14-10-2018 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 SMART SM00919 271 530 1.9E-135 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 4.5E-79 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 14-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 SUPERFAMILY SSF51735 271 561 7.0E-93 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 Pfam PF03949 Malic enzyme, NAD binding domain 271 529 2.0E-98 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 Gene3D G3DSA:3.40.50.10380 17 268 1.4E-116 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 564 70.774 T 14-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 PRINTS PR00072 Malic enzyme signature 298 314 2.7E-75 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 PRINTS PR00072 Malic enzyme signature 242 260 2.7E-75 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 PRINTS PR00072 Malic enzyme signature 407 423 2.7E-75 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 PRINTS PR00072 Malic enzyme signature 147 176 2.7E-75 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 PRINTS PR00072 Malic enzyme signature 267 283 2.7E-75 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 PRINTS PR00072 Malic enzyme signature 87 111 2.7E-75 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 PRINTS PR00072 Malic enzyme signature 183 205 2.7E-75 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 PIRSF PIRSF000106 2 562 1.0E-228 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 SUPERFAMILY SSF53223 7 270 2.95E-111 T 14-10-2018 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 Gene3D G3DSA:3.40.50.720 269 564 6.4E-107 T 14-10-2018 RY45_06845 59c0e53b4cb2f2f0c588fcae64c77b34 564 SMART SM01274 81 261 6.0E-107 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RY45_12875 0810b6ec383760ba94a8915cf262a4e5 553 Pfam PF00501 AMP-binding enzyme 37 446 1.0E-74 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_12875 0810b6ec383760ba94a8915cf262a4e5 553 Gene3D G3DSA:3.30.300.310 442 546 1.1E-27 T 14-10-2018 RY45_12875 0810b6ec383760ba94a8915cf262a4e5 553 Gene3D G3DSA:3.40.50.12780 8 440 2.9E-128 T 14-10-2018 RY45_12875 0810b6ec383760ba94a8915cf262a4e5 553 SUPERFAMILY SSF56801 8 541 1.83E-122 T 14-10-2018 RY45_12875 0810b6ec383760ba94a8915cf262a4e5 553 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 530 2.2E-10 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_12875 0810b6ec383760ba94a8915cf262a4e5 553 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 9 537 2.4E-250 T 14-10-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 RY45_12875 0810b6ec383760ba94a8915cf262a4e5 553 ProSitePatterns PS00455 Putative AMP-binding domain signature. 195 206 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 99 187 3.5E-10 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 SUPERFAMILY SSF56784 11 223 1.22E-53 T 14-10-2018 IPR036412 HAD-like superfamily RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 Gene3D G3DSA:1.10.150.240 24 92 1.5E-51 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 Gene3D G3DSA:3.40.50.1000 12 199 1.5E-51 T 14-10-2018 IPR023214 HAD superfamily RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 192 1.1E-30 T 14-10-2018 RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 5.6E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 5.6E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 5.6E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 5.6E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_11205 bf050ea18856053caa8cc903368e1b0b 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 93 190 1.2E-8 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_09415 f0c4133b576bdc0e8ac07fbd5d260edd 142 Gene3D G3DSA:3.40.30.10 1 109 9.1E-40 T 14-10-2018 RY45_09415 f0c4133b576bdc0e8ac07fbd5d260edd 142 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 1 142 6.9E-45 T 14-10-2018 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 RY45_11635 fdc64030472e2b440dbb3eca3b54be33 221 Gene3D G3DSA:3.30.530.20 18 199 2.6E-45 T 14-10-2018 IPR023393 START-like domain superfamily RY45_11635 fdc64030472e2b440dbb3eca3b54be33 221 SUPERFAMILY SSF55961 19 198 1.76E-33 T 14-10-2018 RY45_11635 fdc64030472e2b440dbb3eca3b54be33 221 PIRSF PIRSF039033 1 219 5.9E-73 T 14-10-2018 IPR028347 START domain-containing protein RY45_11635 fdc64030472e2b440dbb3eca3b54be33 221 Pfam PF01852 START domain 41 191 1.2E-6 T 14-10-2018 IPR002913 START domain GO:0008289 RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 SUPERFAMILY SSF141868 378 626 2.48E-74 T 14-10-2018 IPR035919 EAL domain superfamily RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 Pfam PF00990 Diguanylate cyclase, GGDEF domain 206 355 2.2E-31 T 14-10-2018 IPR000160 GGDEF domain RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 SMART SM00267 195 362 1.3E-36 T 14-10-2018 IPR000160 GGDEF domain RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 SMART SM00052 372 619 1.3E-88 T 14-10-2018 IPR001633 EAL domain RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 SUPERFAMILY SSF55073 211 357 4.32E-33 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 205 354 6.8E-24 T 14-10-2018 IPR000160 GGDEF domain RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 Pfam PF00563 EAL domain 382 614 1.3E-65 T 14-10-2018 IPR001633 EAL domain RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 Gene3D G3DSA:3.20.20.450 376 626 3.7E-85 T 14-10-2018 IPR035919 EAL domain superfamily RY45_04815 3075aefb28d56f5a1c83bd2210c72ab4 643 Gene3D G3DSA:3.30.70.270 202 375 2.3E-37 T 14-10-2018 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 SMART SM00859 6 121 5.3E-43 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 334 38.525 T 14-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 320 1.2E-64 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 1.1E-31 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 335 1.7E-137 T 14-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 Gene3D G3DSA:3.30.360.10 130 317 1.4E-152 T 14-10-2018 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 SUPERFAMILY SSF55347 131 321 3.57E-80 T 14-10-2018 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 SUPERFAMILY SSF51735 5 159 1.07E-53 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 Gene3D G3DSA:3.40.50.720 7 332 1.4E-152 T 14-10-2018 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 PIRSF PIRSF000148 4 338 5.5E-139 T 14-10-2018 RY45_14085 00f8a68f386b13bebfdeeeeb3d130764 338 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 232 246 - T 14-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RY45_04015 5a1218e5f10a82ce868dd705aad026da 128 Pfam PF01250 Ribosomal protein S6 3 91 2.1E-28 T 14-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04015 5a1218e5f10a82ce868dd705aad026da 128 SUPERFAMILY SSF54995 1 103 7.19E-38 T 14-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04015 5a1218e5f10a82ce868dd705aad026da 128 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.948 T 14-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RY45_04015 5a1218e5f10a82ce868dd705aad026da 128 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 4.2E-38 T 14-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04015 5a1218e5f10a82ce868dd705aad026da 128 Gene3D G3DSA:3.30.70.60 1 92 1.7E-32 T 14-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RY45_19260 3529c3b291e3e853ff9437553d88f59b 159 Pfam PF01047 MarR family 31 89 8.8E-15 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_19260 3529c3b291e3e853ff9437553d88f59b 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 2.1E-5 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_19260 3529c3b291e3e853ff9437553d88f59b 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 2.1E-5 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_19260 3529c3b291e3e853ff9437553d88f59b 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 2.1E-5 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_19260 3529c3b291e3e853ff9437553d88f59b 159 SUPERFAMILY SSF46785 4 140 1.03E-31 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_19260 3529c3b291e3e853ff9437553d88f59b 159 SMART SM00347 24 121 8.4E-20 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_19260 3529c3b291e3e853ff9437553d88f59b 159 Gene3D G3DSA:1.10.10.10 1 141 6.4E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_13300 3264db936326960cbd2b4fc5ce3f6052 93 Gene3D G3DSA:1.10.3990.20 8 93 2.3E-28 T 14-10-2018 IPR038268 Ribbon-helix-helix domain superfamily RY45_13300 3264db936326960cbd2b4fc5ce3f6052 93 Pfam PF13467 Ribbon-helix-helix domain 16 83 8.6E-22 T 14-10-2018 IPR027373 Ribbon-helix-helix domain RY45_13710 c00ad4fa0b5ae23f43a4bddfb57d599d 219 SUPERFAMILY SSF53098 7 205 4.29E-58 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_13710 c00ad4fa0b5ae23f43a4bddfb57d599d 219 Hamap MF_00157 Ribonuclease T [rnt]. 1 219 118.221 T 14-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 RY45_13710 c00ad4fa0b5ae23f43a4bddfb57d599d 219 SMART SM00479 16 201 7.2E-37 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_13710 c00ad4fa0b5ae23f43a4bddfb57d599d 219 Pfam PF00929 Exonuclease 18 192 1.2E-40 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_13710 c00ad4fa0b5ae23f43a4bddfb57d599d 219 TIGRFAM TIGR01298 RNaseT: ribonuclease T 8 206 6.6E-107 T 14-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 RY45_13710 c00ad4fa0b5ae23f43a4bddfb57d599d 219 Gene3D G3DSA:3.30.420.10 7 213 2.4E-57 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 Pfam PF00149 Calcineurin-like phosphoesterase 7 236 9.0E-8 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 SUPERFAMILY SSF55816 336 537 1.57E-36 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 PRINTS PR01607 Apyrase family signature 3 21 6.2E-12 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 PRINTS PR01607 Apyrase family signature 219 242 6.2E-12 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 PRINTS PR01607 Apyrase family signature 259 279 6.2E-12 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 PRINTS PR01607 Apyrase family signature 483 502 6.2E-12 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 PRINTS PR01607 Apyrase family signature 200 217 6.2E-12 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 SUPERFAMILY SSF56300 3 326 8.23E-67 T 14-10-2018 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 ProSitePatterns PS00786 5'-nucleotidase signature 2. 92 103 - T 14-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 Gene3D G3DSA:3.90.780.10 343 543 4.6E-37 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 Pfam PF02872 5'-nucleotidase, C-terminal domain 359 509 8.7E-24 T 14-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RY45_10275 173a924fc385bc8d6dacb6de7cef3f42 552 Gene3D G3DSA:3.60.21.10 1 297 1.4E-73 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 SUPERFAMILY SSF53850 89 278 5.25E-28 T 14-10-2018 RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 Gene3D G3DSA:3.40.190.290 89 278 2.6E-23 T 14-10-2018 RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.9E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.9E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.9E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 56 1.4E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 SUPERFAMILY SSF46785 1 80 6.61E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 Pfam PF03466 LysR substrate binding domain 88 276 4.5E-25 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_02015 0a662d21cc206add5376b43dc3bf0917 280 Gene3D G3DSA:1.10.10.10 1 85 9.4E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01160 598f15fd2954b01e72d462871ba75bfd 147 Gene3D G3DSA:3.40.930.10 1 147 6.1E-55 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_01160 598f15fd2954b01e72d462871ba75bfd 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 2.6E-35 T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_01160 598f15fd2954b01e72d462871ba75bfd 147 SUPERFAMILY SSF55804 1 145 1.31E-40 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_01160 598f15fd2954b01e72d462871ba75bfd 147 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Gene3D G3DSA:3.40.50.11180 24 334 3.0E-119 T 14-10-2018 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SUPERFAMILY SSF143517 997 1150 1.2E-42 T 14-10-2018 IPR037235 TRCF-like, C-terminal domain RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Gene3D G3DSA:3.40.50.300 484 993 4.5E-231 T 14-10-2018 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SMART SM01058 484 579 6.4E-46 T 14-10-2018 IPR003711 CarD-like/TRCF domain RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Pfam PF00270 DEAD/DEAH box helicase 608 768 6.1E-19 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SMART SM00982 1011 1111 8.0E-47 T 14-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SUPERFAMILY SSF52540 352 470 5.84E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Pfam PF03461 TRCF domain 1012 1104 4.4E-27 T 14-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Gene3D G3DSA:2.30.30.840 488 544 4.5E-231 T 14-10-2018 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SUPERFAMILY SSF52540 529 786 2.49E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SMART SM00487 603 793 1.4E-32 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 31 1111 28.169 T 14-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Gene3D G3DSA:3.40.50.300 545 784 4.5E-231 T 14-10-2018 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SUPERFAMILY SSF52540 8 343 5.31E-102 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Gene3D G3DSA:3.40.50.11140 357 457 4.8E-23 T 14-10-2018 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Gene3D G3DSA:3.90.1150.50 1007 1153 4.4E-42 T 14-10-2018 IPR037235 TRCF-like, C-terminal domain RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Pfam PF02559 CarD-like/TRCF domain 488 578 1.9E-22 T 14-10-2018 IPR003711 CarD-like/TRCF domain RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SUPERFAMILY SSF141259 475 546 4.45E-21 T 14-10-2018 IPR036101 CarD-like/TRCF domain superfamily RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Gene3D G3DSA:3.30.2060.10 131 216 3.0E-119 T 14-10-2018 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 148 1084 0.0 T 14-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 Pfam PF00271 Helicase conserved C-terminal domain 809 912 1.8E-15 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SMART SM00490 829 913 2.1E-17 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_12655 cee5930c7156588f1cbd22d9bdb08303 1154 SUPERFAMILY SSF52540 785 993 6.55E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10400 2b033abdbd1783b5b0dae48e21028f62 272 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 7 260 5.3E-106 T 14-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 RY45_10400 2b033abdbd1783b5b0dae48e21028f62 272 Gene3D G3DSA:1.10.150.240 25 103 1.4E-97 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_10400 2b033abdbd1783b5b0dae48e21028f62 272 SUPERFAMILY SSF56784 7 262 3.16E-52 T 14-10-2018 IPR036412 HAD-like superfamily RY45_10400 2b033abdbd1783b5b0dae48e21028f62 272 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 75 206 1.7E-14 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_10400 2b033abdbd1783b5b0dae48e21028f62 272 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 272 132.96 T 14-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 RY45_10400 2b033abdbd1783b5b0dae48e21028f62 272 Gene3D G3DSA:3.40.50.1000 9 272 1.4E-97 T 14-10-2018 IPR023214 HAD superfamily RY45_01895 176d67c8635138934312e5176a96fce4 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 98 20.354 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01895 176d67c8635138934312e5176a96fce4 105 SUPERFAMILY SSF50104 4 102 4.59E-35 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily RY45_01895 176d67c8635138934312e5176a96fce4 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 14-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01895 176d67c8635138934312e5176a96fce4 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 40 102 1.6E-25 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01895 176d67c8635138934312e5176a96fce4 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 4.9E-40 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01895 176d67c8635138934312e5176a96fce4 105 Gene3D G3DSA:2.30.30.30 2 105 1.6E-39 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 TIGRFAM TIGR00746 arcC: carbamate kinase 5 301 3.7E-119 T 14-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 Gene3D G3DSA:3.40.1160.10 1 303 7.4E-113 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_21345 bd16342953482db3a0b02236f5d718f6 308 PIRSF PIRSF000723 2 302 2.3E-112 T 14-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 SUPERFAMILY SSF53633 5 300 4.97E-77 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_21345 bd16342953482db3a0b02236f5d718f6 308 Pfam PF00696 Amino acid kinase family 5 275 1.7E-26 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 PRINTS PR01469 Bacterial carbamate kinase signature 105 124 5.1E-62 T 14-10-2018 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 PRINTS PR01469 Bacterial carbamate kinase signature 176 194 5.1E-62 T 14-10-2018 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 PRINTS PR01469 Bacterial carbamate kinase signature 206 221 5.1E-62 T 14-10-2018 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 PRINTS PR01469 Bacterial carbamate kinase signature 257 272 5.1E-62 T 14-10-2018 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 PRINTS PR01469 Bacterial carbamate kinase signature 44 63 5.1E-62 T 14-10-2018 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 PRINTS PR01469 Bacterial carbamate kinase signature 74 92 5.1E-62 T 14-10-2018 RY45_21345 bd16342953482db3a0b02236f5d718f6 308 PRINTS PR01469 Bacterial carbamate kinase signature 153 172 5.1E-62 T 14-10-2018 RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 Pfam PF00571 CBS domain 194 246 2.0E-4 T 14-10-2018 IPR000644 CBS domain RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 Pfam PF03448 MgtE intracellular N domain 28 126 6.7E-6 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 SUPERFAMILY SSF54631 130 267 2.36E-22 T 14-10-2018 RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 Pfam PF01769 Divalent cation transporter 315 436 1.6E-26 T 14-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 SUPERFAMILY SSF161093 273 443 1.7E-47 T 14-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 TIGRFAM TIGR00400 mgtE: magnesium transporter 29 443 7.8E-80 T 14-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 Gene3D G3DSA:1.10.357.20 267 443 1.8E-52 T 14-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 SUPERFAMILY SSF158791 25 124 4.71E-10 T 14-10-2018 RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 Gene3D G3DSA:3.10.580.10 127 252 1.8E-28 T 14-10-2018 RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 SMART SM00924 27 130 4.8E-8 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RY45_14770 700c2a6ba6448d44b24f29b3c1172b4f 447 SMART SM00116 201 248 7.3E-4 T 14-10-2018 IPR000644 CBS domain RY45_15475 c0ac76eded0b40dae0824e00e0a752c1 487 Pfam PF00171 Aldehyde dehydrogenase family 21 480 5.4E-173 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_15475 c0ac76eded0b40dae0824e00e0a752c1 487 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 32 479 3.2E-205 T 14-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 RY45_15475 c0ac76eded0b40dae0824e00e0a752c1 487 Gene3D G3DSA:3.40.309.10 261 450 1.2E-181 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_15475 c0ac76eded0b40dae0824e00e0a752c1 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 257 264 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RY45_15475 c0ac76eded0b40dae0824e00e0a752c1 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 285 296 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RY45_15475 c0ac76eded0b40dae0824e00e0a752c1 487 SUPERFAMILY SSF53720 15 484 3.93E-172 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_15475 c0ac76eded0b40dae0824e00e0a752c1 487 Gene3D G3DSA:3.40.605.10 27 475 1.2E-181 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_19170 f106e4f6245341adb9674740912fcb90 430 Pfam PF00571 CBS domain 294 330 4.2E-4 T 14-10-2018 IPR000644 CBS domain RY45_19170 f106e4f6245341adb9674740912fcb90 430 SUPERFAMILY SSF54631 199 333 1.71E-24 T 14-10-2018 RY45_19170 f106e4f6245341adb9674740912fcb90 430 Gene3D G3DSA:3.10.580.10 192 343 9.8E-38 T 14-10-2018 RY45_19170 f106e4f6245341adb9674740912fcb90 430 Gene3D G3DSA:3.30.465.10 344 425 1.8E-30 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_19170 f106e4f6245341adb9674740912fcb90 430 SMART SM01091 344 426 2.0E-26 T 14-10-2018 IPR005170 Transporter-associated domain RY45_19170 f106e4f6245341adb9674740912fcb90 430 SUPERFAMILY SSF56176 342 426 2.24E-21 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_19170 f106e4f6245341adb9674740912fcb90 430 Pfam PF03471 Transporter associated domain 346 421 3.0E-20 T 14-10-2018 IPR005170 Transporter-associated domain RY45_19170 f106e4f6245341adb9674740912fcb90 430 Pfam PF01595 Domain of unknown function DUF21 4 195 5.5E-43 T 14-10-2018 IPR002550 CNNM, transmembrane domain RY45_12090 b2e007975158f8a8228b61b54f3b9dca 498 SUPERFAMILY SSF48452 332 429 9.99E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_12090 b2e007975158f8a8228b61b54f3b9dca 498 SUPERFAMILY SSF53300 82 196 5.19E-10 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_12090 b2e007975158f8a8228b61b54f3b9dca 498 Pfam PF07719 Tetratricopeptide repeat 385 418 2.5E-5 T 14-10-2018 IPR013105 Tetratricopeptide repeat 2 RY45_12090 b2e007975158f8a8228b61b54f3b9dca 498 Pfam PF13519 von Willebrand factor type A domain 82 188 2.2E-9 T 14-10-2018 IPR002035 von Willebrand factor, type A RY45_12090 b2e007975158f8a8228b61b54f3b9dca 498 Gene3D G3DSA:3.40.50.410 80 267 3.7E-16 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_12090 b2e007975158f8a8228b61b54f3b9dca 498 Gene3D G3DSA:1.25.40.10 337 484 7.9E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_12090 b2e007975158f8a8228b61b54f3b9dca 498 SMART SM00028 385 418 1.9E-5 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_07190 26cdafe0558013d5568c50dacd659c7d 105 Pfam PF02049 Flagellar hook-basal body complex protein FliE 22 105 3.1E-29 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_07190 26cdafe0558013d5568c50dacd659c7d 105 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 1 105 16.148 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_07190 26cdafe0558013d5568c50dacd659c7d 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 69 85 2.0E-11 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_07190 26cdafe0558013d5568c50dacd659c7d 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 90 103 2.0E-11 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_07190 26cdafe0558013d5568c50dacd659c7d 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 34 50 2.0E-11 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_07190 26cdafe0558013d5568c50dacd659c7d 105 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 25 104 3.5E-19 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_18485 3309f37875b653528257f59112236f51 437 Pfam PF00209 Sodium:neurotransmitter symporter family 4 120 2.9E-22 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18485 3309f37875b653528257f59112236f51 437 Pfam PF00209 Sodium:neurotransmitter symporter family 136 434 5.8E-27 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18485 3309f37875b653528257f59112236f51 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 417 437 3.0E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18485 3309f37875b653528257f59112236f51 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 85 111 3.0E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18485 3309f37875b653528257f59112236f51 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 11 32 3.0E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18485 3309f37875b653528257f59112236f51 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 40 59 3.0E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18485 3309f37875b653528257f59112236f51 437 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 27 41 - T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18485 3309f37875b653528257f59112236f51 437 SUPERFAMILY SSF161070 4 436 6.15E-120 T 14-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 RY45_16615 4f03d44f92830c79d74cd1e41c27271b 229 Gene3D G3DSA:3.40.50.2300 1 121 8.5E-37 T 14-10-2018 RY45_16615 4f03d44f92830c79d74cd1e41c27271b 229 SMART SM00448 1 112 2.2E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_16615 4f03d44f92830c79d74cd1e41c27271b 229 SUPERFAMILY SSF52172 1 174 8.94E-36 T 14-10-2018 IPR011006 CheY-like superfamily RY45_16615 4f03d44f92830c79d74cd1e41c27271b 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 215 3.7E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_16615 4f03d44f92830c79d74cd1e41c27271b 229 Pfam PF00072 Response regulator receiver domain 3 112 1.0E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_16615 4f03d44f92830c79d74cd1e41c27271b 229 Gene3D G3DSA:1.10.10.10 122 228 1.3E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16615 4f03d44f92830c79d74cd1e41c27271b 229 SMART SM00862 145 216 2.1E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 SMART SM00852 4 174 5.6E-39 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 385 94.369 T 14-10-2018 IPR008135 Competence-induced protein CinA RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 Pfam PF00994 Probable molybdopterin binding domain 4 173 7.6E-34 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 1 168 2.8E-27 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 SUPERFAMILY SSF53218 1 205 2.62E-39 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 278 4.7E-74 T 14-10-2018 IPR008135 Competence-induced protein CinA RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 Gene3D G3DSA:3.40.980.10 1 176 4.6E-51 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 PIRSF PIRSF006728 330 372 33.0 T 14-10-2018 IPR008135 Competence-induced protein CinA RY45_02760 d4209f852b2037f5602ee7d9e3f7b44d 385 PIRSF PIRSF006728 1 306 4.9E-84 T 14-10-2018 IPR008135 Competence-induced protein CinA RY45_17045 97c2f6932a73b8b63ccf35e1302f9860 152 Pfam PF02576 RimP N-terminal domain 12 83 2.4E-27 T 14-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal RY45_17045 97c2f6932a73b8b63ccf35e1302f9860 152 SUPERFAMILY SSF74942 84 151 1.28E-17 T 14-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily RY45_17045 97c2f6932a73b8b63ccf35e1302f9860 152 SUPERFAMILY SSF75420 3 83 2.22E-25 T 14-10-2018 IPR035956 RimP, N-terminal domain superfamily RY45_17045 97c2f6932a73b8b63ccf35e1302f9860 152 Gene3D G3DSA:3.30.300.70 1 80 1.6E-25 T 14-10-2018 IPR035956 RimP, N-terminal domain superfamily RY45_17045 97c2f6932a73b8b63ccf35e1302f9860 152 Pfam PF17384 RimP C-terminal SH3 domain 86 151 5.7E-19 T 14-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal RY45_17045 97c2f6932a73b8b63ccf35e1302f9860 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 24.546 T 14-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 Gene3D G3DSA:3.30.300.160 8 93 9.3E-22 T 14-10-2018 RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 SMART SM00382 254 380 2.0E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 321 335 - T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 Pfam PF00437 Type II/IV secretion system protein 127 393 2.2E-93 T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 Gene3D G3DSA:3.40.50.300 227 501 4.8E-119 T 14-10-2018 RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 17 498 1.8E-213 T 14-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 Gene3D G3DSA:3.30.450.90 94 226 1.1E-53 T 14-10-2018 RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 SUPERFAMILY SSF160246 16 80 1.52E-15 T 14-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily RY45_03290 8c7f54990dd9df12919a8d56353d3efa 501 SUPERFAMILY SSF52540 110 498 1.12E-106 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08650 b51fd025ad3af1d925d1f5fd9567f395 439 SMART SM01091 348 428 2.1E-30 T 14-10-2018 IPR005170 Transporter-associated domain RY45_08650 b51fd025ad3af1d925d1f5fd9567f395 439 Gene3D G3DSA:3.30.465.10 349 428 7.2E-31 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_08650 b51fd025ad3af1d925d1f5fd9567f395 439 Pfam PF03471 Transporter associated domain 349 427 5.3E-23 T 14-10-2018 IPR005170 Transporter-associated domain RY45_08650 b51fd025ad3af1d925d1f5fd9567f395 439 Gene3D G3DSA:3.10.580.10 195 348 1.5E-29 T 14-10-2018 RY45_08650 b51fd025ad3af1d925d1f5fd9567f395 439 Pfam PF01595 Domain of unknown function DUF21 9 199 4.5E-40 T 14-10-2018 IPR002550 CNNM, transmembrane domain RY45_08650 b51fd025ad3af1d925d1f5fd9567f395 439 SUPERFAMILY SSF56176 346 434 8.18E-25 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_08650 b51fd025ad3af1d925d1f5fd9567f395 439 SUPERFAMILY SSF54631 202 337 2.95E-19 T 14-10-2018 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 PIRSF PIRSF016578 1 192 7.4E-10 T 14-10-2018 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 PIRSF PIRSF016578 217 383 4.3E-14 T 14-10-2018 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 Gene3D G3DSA:1.10.540.10 1 117 8.4E-32 T 14-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 Gene3D G3DSA:2.40.110.10 121 232 5.4E-42 T 14-10-2018 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 SUPERFAMILY SSF47203 225 380 1.1E-61 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 214 5.0E-25 T 14-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 SUPERFAMILY SSF56645 1 240 2.75E-76 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 377 2.0E-52 T 14-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 1.2E-24 T 14-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RY45_12475 69c4d2a774ce1806e40cd3a99fde9383 385 Gene3D G3DSA:1.20.140.10 233 383 1.1E-57 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 12 32 1.3E-4 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 225 309 2.9E-26 T 14-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PIRSF PIRSF000310 2 367 4.2E-133 T 14-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 SUPERFAMILY SSF56770 43 308 5.94E-86 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 Gene3D G3DSA:3.40.50.700 36 223 4.6E-70 T 14-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 Gene3D G3DSA:4.10.480.10 225 316 2.4E-30 T 14-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 58 205 8.1E-33 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 230 248 3.9E-68 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 212 229 3.9E-68 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 155 179 3.9E-68 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 254 280 3.9E-68 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 43 65 3.9E-68 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 66 90 3.9E-68 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 112 135 3.9E-68 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 186 209 3.9E-68 T 14-10-2018 RY45_13110 d18d7dbe37199bfdea29649837a1c955 377 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 4 366 3.4E-168 T 14-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 SUPERFAMILY SSF82693 135 330 1.88E-24 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Gene3D G3DSA:1.20.1640.10 8 513 0.0 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Gene3D G3DSA:3.30.70.1430 38 818 0.0 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Gene3D G3DSA:1.20.1640.10 514 1023 0.0 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 SUPERFAMILY SSF82693 566 671 3.98E-33 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Gene3D G3DSA:3.30.70.1430 568 669 0.0 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 3.7E-112 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Gene3D G3DSA:3.30.70.1440 670 866 0.0 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 SUPERFAMILY SSF82866 806 1031 8.37E-46 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 SUPERFAMILY SSF82714 182 270 3.14E-20 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Gene3D G3DSA:3.30.2090.10 722 810 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 SUPERFAMILY SSF82693 38 133 5.23E-28 T 14-10-2018 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1040 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 Pfam PF00873 AcrB/AcrD/AcrF family 1 1026 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 SUPERFAMILY SSF82714 723 809 3.01E-22 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_15050 50ab4538557d37eb3989bffc18f16af6 1049 SUPERFAMILY SSF82866 296 497 1.57E-48 T 14-10-2018 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 PIRSF PIRSF005419 1 704 2.4E-264 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 138 161 - T 14-10-2018 IPR025505 FHIPEP conserved site RY45_13965 fe80c32359fe1772392675a3274a35e6 704 Gene3D G3DSA:1.10.8.540 514 602 3.4E-32 T 14-10-2018 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 Pfam PF00771 FHIPEP family 27 694 8.5E-237 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 15 702 3.7E-303 T 14-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 Gene3D G3DSA:3.40.30.60 368 513 1.4E-37 T 14-10-2018 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 Gene3D G3DSA:1.10.490.80 604 702 3.7E-33 T 14-10-2018 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 34 47 1.2E-57 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 233 247 1.2E-57 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 71 90 1.2E-57 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 133 149 1.2E-57 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 152 170 1.2E-57 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_13965 fe80c32359fe1772392675a3274a35e6 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 182 199 1.2E-57 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_13405 031fc32b34905e641b080d8ed32cab9f 359 Gene3D G3DSA:1.20.1170.10 8 340 3.0E-37 T 14-10-2018 RY45_13405 031fc32b34905e641b080d8ed32cab9f 359 SUPERFAMILY SSF58100 8 336 1.67E-51 T 14-10-2018 RY45_13405 031fc32b34905e641b080d8ed32cab9f 359 Pfam PF05791 Bacillus haemolytic enterotoxin (HBL) 8 175 7.1E-25 T 14-10-2018 IPR008414 Hemolysin BL-binding component GO:0009405|GO:0016020 RY45_13830 c0e65638ffcd279668694aa48005b0cd 228 Pfam PF06057 Bacterial virulence protein (VirJ) 39 224 1.3E-57 T 14-10-2018 IPR010333 Bacterial virulence RY45_13830 c0e65638ffcd279668694aa48005b0cd 228 SUPERFAMILY SSF53474 31 225 1.95E-19 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_13830 c0e65638ffcd279668694aa48005b0cd 228 Gene3D G3DSA:3.40.50.1820 21 224 2.4E-12 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_12985 830fcd02efddc6b9a6c7657985b3a5f2 627 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 72 97 2.6E-10 T 14-10-2018 RY45_12985 830fcd02efddc6b9a6c7657985b3a5f2 627 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 301 313 2.6E-10 T 14-10-2018 RY45_12985 830fcd02efddc6b9a6c7657985b3a5f2 627 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 102 122 2.6E-10 T 14-10-2018 RY45_12985 830fcd02efddc6b9a6c7657985b3a5f2 627 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 209 230 2.6E-10 T 14-10-2018 RY45_12985 830fcd02efddc6b9a6c7657985b3a5f2 627 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 231 257 2.6E-10 T 14-10-2018 RY45_12985 830fcd02efddc6b9a6c7657985b3a5f2 627 Pfam PF00361 Proton-conducting membrane transporter 125 410 8.9E-50 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12985 830fcd02efddc6b9a6c7657985b3a5f2 627 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 68 99 2.7E-6 T 14-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_15765 cb49c46e546e2f5d1281b887a036cb76 1107 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 495 812 2.6E-91 T 14-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 RY45_15765 cb49c46e546e2f5d1281b887a036cb76 1107 Pfam PF00924 Mechanosensitive ion channel 873 1072 1.4E-55 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RY45_15765 cb49c46e546e2f5d1281b887a036cb76 1107 SUPERFAMILY SSF82861 830 914 7.85E-8 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RY45_15765 cb49c46e546e2f5d1281b887a036cb76 1107 Pfam PF12795 Mechanosensitive ion channel porin domain 43 274 4.5E-49 T 14-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain RY45_15765 cb49c46e546e2f5d1281b887a036cb76 1107 SUPERFAMILY SSF82689 983 1083 1.27E-26 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RY45_15765 cb49c46e546e2f5d1281b887a036cb76 1107 Gene3D G3DSA:2.30.30.60 931 980 3.0E-13 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RY45_15765 cb49c46e546e2f5d1281b887a036cb76 1107 SUPERFAMILY SSF50182 916 981 3.27E-17 T 14-10-2018 IPR010920 LSM domain superfamily RY45_15765 cb49c46e546e2f5d1281b887a036cb76 1107 Gene3D G3DSA:3.30.70.100 984 1077 1.0E-19 T 14-10-2018 RY45_11610 e380bf5b73fa85881909472fdc593cb8 311 PIRSF PIRSF000446 1 311 7.2E-129 T 14-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RY45_11610 e380bf5b73fa85881909472fdc593cb8 311 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 290 3.5E-121 T 14-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RY45_11610 e380bf5b73fa85881909472fdc593cb8 311 Gene3D G3DSA:3.40.366.10 7 286 2.9E-102 T 14-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RY45_11610 e380bf5b73fa85881909472fdc593cb8 311 Pfam PF00698 Acyl transferase domain 8 282 3.7E-36 T 14-10-2018 IPR014043 Acyl transferase RY45_11610 e380bf5b73fa85881909472fdc593cb8 311 SUPERFAMILY SSF55048 128 197 5.36E-17 T 14-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RY45_11610 e380bf5b73fa85881909472fdc593cb8 311 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 297 2.8E-38 T 14-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RY45_11610 e380bf5b73fa85881909472fdc593cb8 311 SUPERFAMILY SSF52151 4 308 7.32E-79 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_11610 e380bf5b73fa85881909472fdc593cb8 311 Gene3D G3DSA:3.30.70.250 125 197 2.9E-102 T 14-10-2018 RY45_07540 a7fd1be2f09afb9907bc75405e6628b1 400 Pfam PF00155 Aminotransferase class I and II 35 390 1.2E-40 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_07540 a7fd1be2f09afb9907bc75405e6628b1 400 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 9 394 3.2E-109 T 14-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 RY45_07540 a7fd1be2f09afb9907bc75405e6628b1 400 SUPERFAMILY SSF53383 7 396 1.18E-83 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_07540 a7fd1be2f09afb9907bc75405e6628b1 400 Gene3D G3DSA:3.90.1150.10 37 387 1.6E-115 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_07540 a7fd1be2f09afb9907bc75405e6628b1 400 Gene3D G3DSA:3.40.640.10 47 288 1.6E-115 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_16765 00db688d6d0afffe7379c8859ca6a322 113 Gene3D G3DSA:3.30.460.10 2 113 1.2E-36 T 14-10-2018 RY45_16765 00db688d6d0afffe7379c8859ca6a322 113 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.413 T 14-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RY45_16765 00db688d6d0afffe7379c8859ca6a322 113 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 1.1E-37 T 14-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RY45_16765 00db688d6d0afffe7379c8859ca6a322 113 SUPERFAMILY SSF81301 3 111 8.34E-38 T 14-10-2018 RY45_16765 00db688d6d0afffe7379c8859ca6a322 113 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 2.0E-27 T 14-10-2018 RY45_16140 561a62aabfe258c8d6157f7cdc415aae 184 Gene3D G3DSA:3.40.1740.10 1 184 1.8E-67 T 14-10-2018 RY45_16140 561a62aabfe258c8d6157f7cdc415aae 184 Pfam PF02622 Uncharacterized ACR, COG1678 13 171 1.8E-50 T 14-10-2018 IPR003774 Protein of unknown function UPF0301 RY45_16140 561a62aabfe258c8d6157f7cdc415aae 184 SUPERFAMILY SSF143456 2 183 4.58E-65 T 14-10-2018 RY45_16140 561a62aabfe258c8d6157f7cdc415aae 184 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 2 184 38.145 T 14-10-2018 IPR003774 Protein of unknown function UPF0301 RY45_18435 4c3e25009cba7d3d9d7cad6499a4ed56 230 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 2.3E-67 T 14-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 RY45_18435 4c3e25009cba7d3d9d7cad6499a4ed56 230 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 224 5.4E-62 T 14-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RY45_18435 4c3e25009cba7d3d9d7cad6499a4ed56 230 SUPERFAMILY SSF53681 118 228 6.54E-34 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RY45_18435 4c3e25009cba7d3d9d7cad6499a4ed56 230 SUPERFAMILY SSF53681 1 116 7.52E-35 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RY45_18435 4c3e25009cba7d3d9d7cad6499a4ed56 230 Gene3D G3DSA:3.40.50.1860 104 215 1.2E-83 T 14-10-2018 RY45_18435 4c3e25009cba7d3d9d7cad6499a4ed56 230 Gene3D G3DSA:3.40.50.1860 4 224 1.2E-83 T 14-10-2018 RY45_11995 35011dd8a24d892bc00174cfbabd65f4 171 Gene3D G3DSA:3.90.550.10 1 168 2.6E-35 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_11995 35011dd8a24d892bc00174cfbabd65f4 171 SUPERFAMILY SSF53448 14 165 1.82E-16 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_11995 35011dd8a24d892bc00174cfbabd65f4 171 Pfam PF12804 MobA-like NTP transferase domain 1 138 2.5E-23 T 14-10-2018 IPR025877 MobA-like NTP transferase RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 Pfam PF13432 Tetratricopeptide repeat 153 215 9.5E-5 T 14-10-2018 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 SUPERFAMILY SSF81901 259 392 4.71E-7 T 14-10-2018 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 Gene3D G3DSA:1.25.40.10 23 138 2.1E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 Gene3D G3DSA:1.25.40.10 251 397 5.8E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 Gene3D G3DSA:1.25.40.10 139 249 8.3E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 SMART SM00028 358 391 72.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 SMART SM00028 72 105 270.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 SMART SM00028 289 322 76.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 SMART SM00028 148 181 0.38 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 SUPERFAMILY SSF48452 110 246 2.61E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 Pfam PF13181 Tetratricopeptide repeat 111 135 0.1 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_17700 8799b705956f1b8ff68f7e195b36edbf 411 SUPERFAMILY SSF48452 33 129 5.92E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 Gene3D G3DSA:1.20.1380.10 56 169 8.5E-45 T 14-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 SUPERFAMILY SSF82808 61 169 1.19E-39 T 14-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 Pfam PF17206 SeqA protein N-terminal domain 1 34 4.7E-21 T 14-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 PIRSF PIRSF019401 43 169 7.6E-36 T 14-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 PIRSF PIRSF019401 1 59 5.0E-17 T 14-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 Pfam PF03925 SeqA protein C-terminal domain 61 167 1.5E-40 T 14-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 169 43.551 T 14-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 Gene3D G3DSA:1.10.1220.10 1 40 3.0E-23 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RY45_08350 3c884c400583522c5495c7ac2c6dfb32 169 SUPERFAMILY SSF47598 1 34 2.67E-13 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RY45_20570 38d1dc8cda7ffaeaf6be90868612fa67 85 Pfam PF01722 BolA-like protein 19 74 3.7E-13 T 14-10-2018 IPR002634 BolA protein RY45_20570 38d1dc8cda7ffaeaf6be90868612fa67 85 PIRSF PIRSF003113 1 84 5.2E-21 T 14-10-2018 IPR002634 BolA protein RY45_20570 38d1dc8cda7ffaeaf6be90868612fa67 85 SUPERFAMILY SSF82657 1 81 1.44E-27 T 14-10-2018 IPR036065 BolA-like superfamily RY45_20570 38d1dc8cda7ffaeaf6be90868612fa67 85 Gene3D G3DSA:3.30.300.90 1 83 1.5E-32 T 14-10-2018 RY45_09905 9d3a018a0615c8e7bdb4655f0fbfe39b 193 Gene3D G3DSA:3.30.60.20 143 188 3.2E-8 T 14-10-2018 RY45_09905 9d3a018a0615c8e7bdb4655f0fbfe39b 193 Gene3D G3DSA:3.40.50.300 1 141 1.5E-25 T 14-10-2018 RY45_09905 9d3a018a0615c8e7bdb4655f0fbfe39b 193 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 14-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RY45_09905 9d3a018a0615c8e7bdb4655f0fbfe39b 193 SUPERFAMILY SSF52540 1 141 2.66E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09905 9d3a018a0615c8e7bdb4655f0fbfe39b 193 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 33.225 T 14-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RY45_09905 9d3a018a0615c8e7bdb4655f0fbfe39b 193 SUPERFAMILY SSF57716 142 189 3.71E-16 T 14-10-2018 RY45_09905 9d3a018a0615c8e7bdb4655f0fbfe39b 193 Pfam PF00265 Thymidine kinase 3 186 1.3E-50 T 14-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RY45_09905 9d3a018a0615c8e7bdb4655f0fbfe39b 193 PIRSF PIRSF035805 1 193 5.4E-55 T 14-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RY45_05510 69cbb87d9c28db8cfe4269e8c5d3ca21 71 Pfam PF04102 SlyX 5 71 9.7E-25 T 14-10-2018 IPR007236 SlyX RY45_05510 69cbb87d9c28db8cfe4269e8c5d3ca21 71 SUPERFAMILY SSF57997 3 53 1.37E-5 T 14-10-2018 RY45_05510 69cbb87d9c28db8cfe4269e8c5d3ca21 71 Hamap MF_00715 Protein SlyX [slyX]. 4 71 16.58 T 14-10-2018 IPR007236 SlyX RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.2E-34 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.2E-34 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.2E-34 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.2E-34 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.2E-34 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.2E-34 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 SUPERFAMILY SSF51735 5 250 1.02E-74 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 249 4.4E-59 T 14-10-2018 RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 Gene3D G3DSA:3.40.50.720 1 250 1.5E-75 T 14-10-2018 RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 5.5E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.5E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.5E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12350 0d57a3ebe62188b327e39b7852cfe2a2 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 192 2.1E-4 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 298 4.1E-56 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_21255 0994050d7004128861dda49d9e9827f5 442 Gene3D G3DSA:3.50.50.60 2 338 4.4E-156 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_21255 0994050d7004128861dda49d9e9827f5 442 SUPERFAMILY SSF51905 1 315 4.48E-46 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 174 3.0E-16 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 3.0E-16 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 282 3.0E-16 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 3.0E-16 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 328 430 6.4E-18 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RY45_21255 0994050d7004128861dda49d9e9827f5 442 Gene3D G3DSA:3.50.50.60 111 438 4.4E-156 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 4.5E-25 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 4.5E-25 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 4.5E-25 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 4.5E-25 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 4.5E-25 T 14-10-2018 RY45_21255 0994050d7004128861dda49d9e9827f5 442 SUPERFAMILY SSF55424 321 440 5.33E-33 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 256 8.6E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 225 240 8.6E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 Pfam PF12833 Helix-turn-helix domain 180 258 7.3E-20 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 Gene3D G3DSA:2.60.120.10 4 109 7.4E-6 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 SMART SM00342 174 256 5.6E-25 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 209 252 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 SUPERFAMILY SSF46689 211 259 6.72E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 Gene3D G3DSA:1.10.10.60 154 260 8.1E-21 T 14-10-2018 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 Pfam PF02311 AraC-like ligand binding domain 24 112 1.8E-7 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RY45_06650 a63cbd9e0cc9c5ac8f128e8762f999fd 268 SUPERFAMILY SSF51182 12 183 1.27E-10 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_04010 5af161cfc2a7f76af39fd28d9c041076 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 122 141 7.5E-28 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RY45_04010 5af161cfc2a7f76af39fd28d9c041076 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 297 316 7.5E-28 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RY45_04010 5af161cfc2a7f76af39fd28d9c041076 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 147 168 7.5E-28 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RY45_04010 5af161cfc2a7f76af39fd28d9c041076 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 197 220 7.5E-28 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RY45_04010 5af161cfc2a7f76af39fd28d9c041076 407 PRINTS PR00447 Natural resistance-associated macrophage protein signature 94 120 7.5E-28 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RY45_04010 5af161cfc2a7f76af39fd28d9c041076 407 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 16 375 8.2E-96 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RY45_04010 5af161cfc2a7f76af39fd28d9c041076 407 Pfam PF01566 Natural resistance-associated macrophage protein 35 381 2.2E-124 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RY45_04010 5af161cfc2a7f76af39fd28d9c041076 407 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 5 407 36.198 T 14-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 SUPERFAMILY SSF54752 268 324 4.19E-19 T 14-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 ProSitePatterns PS00321 recA signature. 213 221 - T 14-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 Hamap MF_00268 Protein RecA [recA]. 5 329 51.025 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 Pfam PF00154 recA bacterial DNA recombination protein 7 268 1.4E-145 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 PRINTS PR00142 RecA protein signature 165 194 1.2E-80 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 PRINTS PR00142 RecA protein signature 210 238 1.2E-80 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 PRINTS PR00142 RecA protein signature 93 122 1.2E-80 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 PRINTS PR00142 RecA protein signature 243 272 1.2E-80 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 PRINTS PR00142 RecA protein signature 127 156 1.2E-80 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 PRINTS PR00142 RecA protein signature 297 314 1.2E-80 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 SMART SM00382 57 228 1.7E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 Gene3D G3DSA:3.40.50.300 26 267 2.3E-83 T 14-10-2018 RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 Gene3D G3DSA:3.30.250.10 268 344 3.4E-23 T 14-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 SUPERFAMILY SSF52540 4 267 5.58E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19235 f641ec705cc1fd809d983975486b2cdf 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 5.3E-172 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 SUPERFAMILY SSF53927 222 530 2.21E-128 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 Gene3D G3DSA:3.40.140.20 220 373 2.0E-56 T 14-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 530 44.989 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 530 4.1E-254 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 Gene3D G3DSA:3.40.140.20 394 530 4.5E-59 T 14-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 SUPERFAMILY SSF52335 7 197 1.57E-71 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 PIRSF PIRSF000414 1 530 6.0E-225 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 Gene3D G3DSA:3.40.50.1380 1 200 5.9E-86 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 SMART SM00851 19 132 1.9E-63 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 Pfam PF02142 MGS-like domain 19 132 1.3E-30 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 461 2.6E-116 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_04705 4dddbd482e2172cccad0bb0555ef1aee 530 SMART SM00798 137 462 1.2E-213 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 Pfam PF11799 impB/mucB/samB family C-terminal domain 233 335 1.6E-5 T 14-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 Hamap MF_01113 DNA polymerase IV [dinB]. 1 347 35.835 T 14-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 Pfam PF00817 impB/mucB/samB family 7 154 1.0E-47 T 14-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 Gene3D G3DSA:3.30.70.270 4 164 1.2E-62 T 14-10-2018 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 Gene3D G3DSA:2.30.40.20 21 73 1.2E-62 T 14-10-2018 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 Gene3D G3DSA:1.10.150.20 166 224 2.4E-16 T 14-10-2018 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 SUPERFAMILY SSF56672 1 234 9.78E-88 T 14-10-2018 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 Gene3D G3DSA:3.30.1490.100 237 349 7.1E-19 T 14-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 Pfam PF11798 IMS family HHH motif 166 197 7.7E-9 T 14-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RY45_06150 39d3980a89c8e333bb64a293897c4786 350 SUPERFAMILY SSF100879 241 348 3.34E-17 T 14-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RY45_05835 8200a969337ae76667d3af38854f6a52 390 Pfam PF00800 Prephenate dehydratase 104 285 2.7E-54 T 14-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RY45_05835 8200a969337ae76667d3af38854f6a52 390 SUPERFAMILY SSF55021 278 375 1.09E-24 T 14-10-2018 RY45_05835 8200a969337ae76667d3af38854f6a52 390 Gene3D G3DSA:3.30.70.260 290 377 3.8E-25 T 14-10-2018 RY45_05835 8200a969337ae76667d3af38854f6a52 390 SUPERFAMILY SSF48600 3 90 1.65E-20 T 14-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RY45_05835 8200a969337ae76667d3af38854f6a52 390 Gene3D G3DSA:3.40.190.10 187 272 2.3E-50 T 14-10-2018 RY45_05835 8200a969337ae76667d3af38854f6a52 390 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 5 86 4.2E-27 T 14-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 RY45_05835 8200a969337ae76667d3af38854f6a52 390 Pfam PF01817 Chorismate mutase type II 8 86 6.3E-17 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RY45_05835 8200a969337ae76667d3af38854f6a52 390 Gene3D G3DSA:3.40.190.10 106 279 2.3E-50 T 14-10-2018 RY45_05835 8200a969337ae76667d3af38854f6a52 390 PIRSF PIRSF001500 1 378 4.8E-127 T 14-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RY45_05835 8200a969337ae76667d3af38854f6a52 390 Gene3D G3DSA:1.20.59.10 1 105 7.9E-32 T 14-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RY45_05835 8200a969337ae76667d3af38854f6a52 390 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 323 330 - T 14-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RY45_05835 8200a969337ae76667d3af38854f6a52 390 SUPERFAMILY SSF53850 103 287 1.41E-50 T 14-10-2018 RY45_05835 8200a969337ae76667d3af38854f6a52 390 SMART SM00830 8 88 6.0E-25 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RY45_00955 86c921d351550277c26537f5b5511649 115 SUPERFAMILY SSF55298 5 114 2.67E-29 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_00955 86c921d351550277c26537f5b5511649 115 Gene3D G3DSA:3.30.1330.40 1 115 8.1E-35 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_00955 86c921d351550277c26537f5b5511649 115 Pfam PF01042 Endoribonuclease L-PSP 5 114 6.2E-21 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RY45_01345 e103dba31b68c792c20df33566abe21b 240 Pfam PF10988 Putative auto-transporter adhesin, head GIN domain 47 223 4.6E-39 T 14-10-2018 IPR021255 Putative auto-transporter adhesin, head GIN domain RY45_01345 e103dba31b68c792c20df33566abe21b 240 Gene3D G3DSA:2.160.20.120 21 237 1.8E-47 T 14-10-2018 RY45_16630 171114e5ecd0f8cda930570a805a5b37 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 14-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 RY45_16630 171114e5ecd0f8cda930570a805a5b37 347 SMART SM01240 7 344 1.1E-136 T 14-10-2018 RY45_16630 171114e5ecd0f8cda930570a805a5b37 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 337 2.1E-77 T 14-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 RY45_16630 171114e5ecd0f8cda930570a805a5b37 347 SUPERFAMILY SSF51412 6 336 2.75E-99 T 14-10-2018 RY45_16630 171114e5ecd0f8cda930570a805a5b37 347 PIRSF PIRSF000235 1 347 4.0E-193 T 14-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 RY45_16630 171114e5ecd0f8cda930570a805a5b37 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 50.685 T 14-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 RY45_16630 171114e5ecd0f8cda930570a805a5b37 347 Gene3D G3DSA:3.20.20.70 1 345 3.3E-117 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_16630 171114e5ecd0f8cda930570a805a5b37 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 2.4E-189 T 14-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 RY45_05500 21af22414d27b1b6249919735b255d05 68 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 5 62 1.5E-22 T 14-10-2018 IPR012658 Conserved hypothetical protein CHP02443 RY45_05500 21af22414d27b1b6249919735b255d05 68 Pfam PF09526 Probable metal-binding protein (DUF2387) 6 61 9.7E-17 T 14-10-2018 IPR012658 Conserved hypothetical protein CHP02443 RY45_18710 85b9a89317a3da01077fc7ad360056a5 146 SUPERFAMILY SSF110087 4 139 6.41E-42 T 14-10-2018 IPR036182 Copper chaperone PCuAC superfamily RY45_18710 85b9a89317a3da01077fc7ad360056a5 146 Pfam PF04314 Copper chaperone PCu(A)C 26 130 1.0E-34 T 14-10-2018 IPR007410 Copper chaperone PCuAC RY45_18710 85b9a89317a3da01077fc7ad360056a5 146 Gene3D G3DSA:2.60.40.1890 27 139 5.6E-37 T 14-10-2018 IPR036182 Copper chaperone PCuAC superfamily RY45_04240 26a0454b06325936f566bfc8c03dcd97 215 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 98 109 - T 14-10-2018 IPR033130 Ribonuclease T2, His active site 2 Reactome: R-HSA-6798695 RY45_04240 26a0454b06325936f566bfc8c03dcd97 215 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 59 66 - T 14-10-2018 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 Reactome: R-HSA-6798695 RY45_04240 26a0454b06325936f566bfc8c03dcd97 215 Gene3D G3DSA:3.90.730.10 19 212 4.3E-32 T 14-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 RY45_04240 26a0454b06325936f566bfc8c03dcd97 215 Pfam PF00445 Ribonuclease T2 family 32 192 1.0E-16 T 14-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 RY45_04240 26a0454b06325936f566bfc8c03dcd97 215 SUPERFAMILY SSF55895 28 197 4.97E-33 T 14-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 SUPERFAMILY SSF82114 174 306 7.63E-46 T 14-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 SUPERFAMILY SSF52374 15 175 1.07E-33 T 14-10-2018 RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 Pfam PF06574 FAD synthetase 12 166 5.3E-55 T 14-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 Gene3D G3DSA:3.40.50.620 1 186 8.0E-60 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 305 7.1E-103 T 14-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 SMART SM00904 183 306 3.5E-64 T 14-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 Pfam PF01687 Riboflavin kinase 184 305 2.7E-37 T 14-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 Gene3D G3DSA:2.40.30.30 188 305 3.1E-40 T 14-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RY45_03865 2cbea5fccb308ff804a9a830699fb5f2 324 PIRSF PIRSF004491 1 307 1.3E-105 T 14-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RY45_04135 d6c3964ae8b22a514fa3cce277e33317 188 Gene3D G3DSA:1.10.357.10 65 188 2.8E-15 T 14-10-2018 RY45_04135 d6c3964ae8b22a514fa3cce277e33317 188 SUPERFAMILY SSF48498 79 186 1.57E-19 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_04135 d6c3964ae8b22a514fa3cce277e33317 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.3E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_04135 d6c3964ae8b22a514fa3cce277e33317 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.3E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_04135 d6c3964ae8b22a514fa3cce277e33317 188 SUPERFAMILY SSF46689 3 78 4.51E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_04135 d6c3964ae8b22a514fa3cce277e33317 188 Gene3D G3DSA:1.10.10.60 1 64 5.8E-23 T 14-10-2018 RY45_04135 d6c3964ae8b22a514fa3cce277e33317 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 9.5E-13 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_04135 d6c3964ae8b22a514fa3cce277e33317 188 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RY45_15525 a8c7d19052b9ed3bd57c2c7431c5c847 225 Gene3D G3DSA:2.60.120.10 18 144 3.8E-18 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_15525 a8c7d19052b9ed3bd57c2c7431c5c847 225 SUPERFAMILY SSF51206 31 143 1.57E-21 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like RY45_15525 a8c7d19052b9ed3bd57c2c7431c5c847 225 Pfam PF00027 Cyclic nucleotide-binding domain 34 120 1.3E-13 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_04250 c6df3bba7986e380e2ee7240e2a4050b 353 Gene3D G3DSA:3.20.20.70 2 350 1.8E-115 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_04250 c6df3bba7986e380e2ee7240e2a4050b 353 Pfam PF03060 Nitronate monooxygenase 8 342 4.4E-79 T 14-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RY45_04250 c6df3bba7986e380e2ee7240e2a4050b 353 SUPERFAMILY SSF51412 2 324 3.36E-65 T 14-10-2018 RY45_10865 d2dcc4e634ff007f6c6e07c83c5c66cb 137 SUPERFAMILY SSF54593 18 134 2.28E-22 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_10865 d2dcc4e634ff007f6c6e07c83c5c66cb 137 Gene3D G3DSA:3.10.180.10 13 136 2.0E-36 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_10865 d2dcc4e634ff007f6c6e07c83c5c66cb 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 23 129 7.9E-6 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_09590 75e06ff909d9e286b1dfdf841fed1155 371 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 10 350 3.5E-127 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RY45_09590 75e06ff909d9e286b1dfdf841fed1155 371 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 8 358 34.555 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RY45_09590 75e06ff909d9e286b1dfdf841fed1155 371 PIRSF PIRSF004640 2 363 5.4E-145 T 14-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RY45_09590 75e06ff909d9e286b1dfdf841fed1155 371 Gene3D G3DSA:3.30.413.10 263 360 1.2E-24 T 14-10-2018 RY45_09590 75e06ff909d9e286b1dfdf841fed1155 371 SUPERFAMILY SSF51604 24 140 4.94E-10 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RY45_09590 75e06ff909d9e286b1dfdf841fed1155 371 Pfam PF04551 GcpE protein 14 354 1.5E-132 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RY45_09590 75e06ff909d9e286b1dfdf841fed1155 371 SUPERFAMILY SSF56014 266 354 9.16E-13 T 14-10-2018 RY45_09590 75e06ff909d9e286b1dfdf841fed1155 371 Gene3D G3DSA:3.20.20.20 1 262 7.6E-104 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_04635 4e1b09e596b0acd7560a1d0040d39625 205 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 4 202 4.9E-66 T 14-10-2018 RY45_04635 4e1b09e596b0acd7560a1d0040d39625 205 SUPERFAMILY SSF53335 9 202 7.92E-44 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_04635 4e1b09e596b0acd7560a1d0040d39625 205 Gene3D G3DSA:3.40.50.150 2 204 2.2E-74 T 14-10-2018 RY45_04635 4e1b09e596b0acd7560a1d0040d39625 205 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 2 205 36.623 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RY45_04635 4e1b09e596b0acd7560a1d0040d39625 205 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 127 142 - T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RY45_04635 4e1b09e596b0acd7560a1d0040d39625 205 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 3 203 1.5E-76 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RY45_12585 a300901437a492d0f93c379114e3a9b9 551 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 64 468 4.1E-60 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RY45_12585 a300901437a492d0f93c379114e3a9b9 551 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 179 204 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site RY45_12585 a300901437a492d0f93c379114e3a9b9 551 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 452 472 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site RY45_12585 a300901437a492d0f93c379114e3a9b9 551 Gene3D G3DSA:1.20.1730.10 51 543 2.5E-58 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily RY45_12585 a300901437a492d0f93c379114e3a9b9 551 Pfam PF00474 Sodium:solute symporter family 64 470 1.3E-122 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RY45_18665 ac6508697c14be19c68ff2d8955e94b1 38 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 30 6.3E-20 T 14-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 RY45_18665 ac6508697c14be19c68ff2d8955e94b1 38 Pfam PF08173 Membrane bound YbgT-like protein 1 26 5.7E-17 T 14-10-2018 IPR012994 Membrane bound YbgT-like RY45_06260 795fc022d651bc20aa1451fca6cc8c38 434 Hamap MF_01301 Maltoporin [lamB]. 2 434 49.132 T 14-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 RY45_06260 795fc022d651bc20aa1451fca6cc8c38 434 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 42 429 8.0E-164 T 14-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 RY45_06260 795fc022d651bc20aa1451fca6cc8c38 434 Gene3D G3DSA:2.40.170.10 24 434 6.0E-136 T 14-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 RY45_06260 795fc022d651bc20aa1451fca6cc8c38 434 Pfam PF02264 LamB porin 26 434 8.8E-123 T 14-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 RY45_06260 795fc022d651bc20aa1451fca6cc8c38 434 SUPERFAMILY SSF56935 24 434 1.1E-127 T 14-10-2018 RY45_05850 5c2eda09d84e1c50ec5a692efa728333 290 Gene3D G3DSA:3.40.50.620 24 131 6.7E-7 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_05850 5c2eda09d84e1c50ec5a692efa728333 290 SUPERFAMILY SSF52402 34 125 1.07E-9 T 14-10-2018 RY45_21400 f483b421504d13f98e370a166b224ddf 352 SUPERFAMILY SSF54197 177 343 1.13E-54 T 14-10-2018 IPR036265 HIT-like superfamily RY45_21400 f483b421504d13f98e370a166b224ddf 352 SUPERFAMILY SSF54197 2 175 5.31E-69 T 14-10-2018 IPR036265 HIT-like superfamily RY45_21400 f483b421504d13f98e370a166b224ddf 352 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 2 344 1.0E-178 T 14-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RY45_21400 f483b421504d13f98e370a166b224ddf 352 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 3 174 3.6E-67 T 14-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RY45_21400 f483b421504d13f98e370a166b224ddf 352 Gene3D G3DSA:3.30.428.10 43 173 4.9E-53 T 14-10-2018 IPR036265 HIT-like superfamily RY45_21400 f483b421504d13f98e370a166b224ddf 352 Gene3D G3DSA:3.30.428.10 174 352 9.1E-71 T 14-10-2018 IPR036265 HIT-like superfamily RY45_21400 f483b421504d13f98e370a166b224ddf 352 PIRSF PIRSF000808 1 339 3.3E-120 T 14-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RY45_21400 f483b421504d13f98e370a166b224ddf 352 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 181 344 3.6E-64 T 14-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RY45_21400 f483b421504d13f98e370a166b224ddf 352 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 149 166 - T 14-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RY45_21880 58b6fc2f2b164c2da8a8865ab21644a3 253 Gene3D G3DSA:3.40.50.300 8 250 1.5E-46 T 14-10-2018 RY45_21880 58b6fc2f2b164c2da8a8865ab21644a3 253 SUPERFAMILY SSF52540 9 233 1.65E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21880 58b6fc2f2b164c2da8a8865ab21644a3 253 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_21880 58b6fc2f2b164c2da8a8865ab21644a3 253 Pfam PF00005 ABC transporter 19 173 1.0E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_21880 58b6fc2f2b164c2da8a8865ab21644a3 253 SMART SM00382 28 223 2.7E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_20260 512906958803be2492b0c0163ec962c3 244 SUPERFAMILY SSF117143 78 199 3.66E-16 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RY45_20260 512906958803be2492b0c0163ec962c3 244 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 168 237 5.4E-17 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_20260 512906958803be2492b0c0163ec962c3 244 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 220 1.3E-54 T 14-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 RY45_20260 512906958803be2492b0c0163ec962c3 244 Pfam PF00460 Flagella basal body rod protein 5 35 4.7E-7 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_20260 512906958803be2492b0c0163ec962c3 244 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 5.3E-34 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RY45_07685 c4eb88b01886b69775160e73475cdf40 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 301 39.739 T 14-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 RY45_07685 c4eb88b01886b69775160e73475cdf40 303 Pfam PF04381 Putative exonuclease, RdgC 1 299 1.3E-125 T 14-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 RY45_14280 1122708116d0aad4286d756f6e3ddc52 431 SMART SM00487 20 229 1.7E-60 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_14280 1122708116d0aad4286d756f6e3ddc52 431 Gene3D G3DSA:3.40.50.300 1 211 1.2E-77 T 14-10-2018 RY45_14280 1122708116d0aad4286d756f6e3ddc52 431 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_14280 1122708116d0aad4286d756f6e3ddc52 431 Gene3D G3DSA:3.40.50.300 213 427 9.9E-50 T 14-10-2018 RY45_14280 1122708116d0aad4286d756f6e3ddc52 431 SUPERFAMILY SSF52540 74 358 1.53E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14280 1122708116d0aad4286d756f6e3ddc52 431 Pfam PF00270 DEAD/DEAH box helicase 25 196 9.2E-51 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_14280 1122708116d0aad4286d756f6e3ddc52 431 Pfam PF00271 Helicase conserved C-terminal domain 232 339 3.4E-28 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_14280 1122708116d0aad4286d756f6e3ddc52 431 SMART SM00490 258 339 2.6E-31 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 Pfam PF00270 DEAD/DEAH box helicase 27 196 1.7E-45 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 SUPERFAMILY SSF52540 75 363 6.04E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 Pfam PF00271 Helicase conserved C-terminal domain 234 342 2.4E-31 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 3 407 50.555 T 14-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 Gene3D G3DSA:3.40.50.300 217 407 3.6E-49 T 14-10-2018 RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 Gene3D G3DSA:3.40.50.300 1 211 4.3E-71 T 14-10-2018 RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 SMART SM00487 22 224 1.3E-54 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_18785 441218c24ddfddbb48ab1de66e559cad 407 SMART SM00490 261 342 6.3E-33 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_15855 809245efc2a2235afa322213ae0beebc 697 SUPERFAMILY SSF103190 169 306 8.63E-10 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_15855 809245efc2a2235afa322213ae0beebc 697 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 663 2.3E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_15855 809245efc2a2235afa322213ae0beebc 697 Gene3D G3DSA:3.30.565.10 518 669 6.5E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_15855 809245efc2a2235afa322213ae0beebc 697 Pfam PF00512 His Kinase A (phospho-acceptor) domain 444 508 1.8E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_15855 809245efc2a2235afa322213ae0beebc 697 SUPERFAMILY SSF47384 438 509 9.22E-12 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_15855 809245efc2a2235afa322213ae0beebc 697 Gene3D G3DSA:1.10.287.130 436 508 8.3E-21 T 14-10-2018 RY45_15855 809245efc2a2235afa322213ae0beebc 697 SMART SM00388 444 511 5.3E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_15855 809245efc2a2235afa322213ae0beebc 697 SMART SM00387 554 666 1.5E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_15855 809245efc2a2235afa322213ae0beebc 697 Pfam PF17202 Single cache domain 3 199 312 1.3E-25 T 14-10-2018 IPR033463 Single cache domain 3 RY45_15855 809245efc2a2235afa322213ae0beebc 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 611 9.7E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15855 809245efc2a2235afa322213ae0beebc 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 615 625 9.7E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15855 809245efc2a2235afa322213ae0beebc 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 644 9.7E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15855 809245efc2a2235afa322213ae0beebc 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 650 663 9.7E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_15855 809245efc2a2235afa322213ae0beebc 697 SUPERFAMILY SSF55874 502 662 3.54E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 PIRSF PIRSF002560 1 157 4.2E-73 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 PRINTS PR00601 Bacterioferritin signature 23 43 1.3E-74 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 PRINTS PR00601 Bacterioferritin signature 3 22 1.3E-74 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 PRINTS PR00601 Bacterioferritin signature 65 85 1.3E-74 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 PRINTS PR00601 Bacterioferritin signature 128 149 1.3E-74 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 PRINTS PR00601 Bacterioferritin signature 86 106 1.3E-74 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 PRINTS PR00601 Bacterioferritin signature 44 64 1.3E-74 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 PRINTS PR00601 Bacterioferritin signature 107 127 1.3E-74 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 Gene3D G3DSA:1.20.1260.10 1 158 1.7E-71 T 14-10-2018 IPR012347 Ferritin-like RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 SUPERFAMILY SSF47240 1 154 5.42E-55 T 14-10-2018 IPR009078 Ferritin-like superfamily RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 Pfam PF00210 Ferritin-like domain 8 144 9.6E-40 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 3.2E-80 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_19815 5a1239b3ca45e0f7c39d99af337d9a29 159 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RY45_16910 195bda87d696b856fbc4592303936f2d 130 SUPERFAMILY SSF54593 11 128 5.06E-14 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_16910 195bda87d696b856fbc4592303936f2d 130 Gene3D G3DSA:3.10.180.10 2 128 3.0E-16 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_21910 98ac06c93b033612094ca7ee65358db2 384 SUPERFAMILY SSF55073 218 376 1.57E-48 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_21910 98ac06c93b033612094ca7ee65358db2 384 Pfam PF00990 Diguanylate cyclase, GGDEF domain 214 374 2.3E-50 T 14-10-2018 IPR000160 GGDEF domain RY45_21910 98ac06c93b033612094ca7ee65358db2 384 SMART SM00267 202 378 1.0E-62 T 14-10-2018 IPR000160 GGDEF domain RY45_21910 98ac06c93b033612094ca7ee65358db2 384 Gene3D G3DSA:3.30.70.270 199 378 1.9E-56 T 14-10-2018 RY45_21910 98ac06c93b033612094ca7ee65358db2 384 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 212 377 7.9E-50 T 14-10-2018 IPR000160 GGDEF domain RY45_09760 0e67768db7ea732a1d1cee6d8059cd1b 135 Gene3D G3DSA:1.10.260.40 1 64 4.7E-7 T 14-10-2018 RY45_09760 0e67768db7ea732a1d1cee6d8059cd1b 135 SUPERFAMILY SSF47413 4 62 1.8E-5 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_09760 0e67768db7ea732a1d1cee6d8059cd1b 135 Pfam PF01381 Helix-turn-helix 16 59 5.0E-5 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_04925 6ccf85194be562bffed021f4b743aadf 166 SUPERFAMILY SSF48317 4 164 1.96E-37 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RY45_04925 6ccf85194be562bffed021f4b743aadf 166 Pfam PF01569 PAP2 superfamily 61 164 1.8E-20 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_04925 6ccf85194be562bffed021f4b743aadf 166 Gene3D G3DSA:1.20.144.10 87 166 3.4E-18 T 14-10-2018 RY45_04925 6ccf85194be562bffed021f4b743aadf 166 SMART SM00014 57 162 3.0E-19 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_14995 9c91b7a4697058eda92364ba1c400064 295 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 5 289 3.7E-161 T 14-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 RY45_14995 9c91b7a4697058eda92364ba1c400064 295 Pfam PF00483 Nucleotidyl transferase 5 241 3.8E-71 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RY45_14995 9c91b7a4697058eda92364ba1c400064 295 SUPERFAMILY SSF53448 4 289 6.41E-94 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_14995 9c91b7a4697058eda92364ba1c400064 295 Gene3D G3DSA:3.90.550.10 1 294 1.8E-89 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_08120 8aedf55061a8608d3ec73c60bf96f7f3 398 Gene3D G3DSA:3.90.1150.10 46 380 2.2E-124 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_08120 8aedf55061a8608d3ec73c60bf96f7f3 398 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 238 247 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RY45_08120 8aedf55061a8608d3ec73c60bf96f7f3 398 SUPERFAMILY SSF53383 15 384 4.47E-105 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_08120 8aedf55061a8608d3ec73c60bf96f7f3 398 Pfam PF00155 Aminotransferase class I and II 45 383 3.1E-54 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_08120 8aedf55061a8608d3ec73c60bf96f7f3 398 Gene3D G3DSA:3.40.640.10 62 289 2.2E-124 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_08120 8aedf55061a8608d3ec73c60bf96f7f3 398 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 25 383 4.5E-133 T 14-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 RY45_08120 8aedf55061a8608d3ec73c60bf96f7f3 398 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 8 387 48.363 T 14-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 RY45_10690 68e4ddf9dae6a80412dc3de617734b81 416 PRINTS PR00173 Glutamate-aspartate symporter signature 288 314 6.9E-14 T 14-10-2018 RY45_10690 68e4ddf9dae6a80412dc3de617734b81 416 PRINTS PR00173 Glutamate-aspartate symporter signature 186 205 6.9E-14 T 14-10-2018 RY45_10690 68e4ddf9dae6a80412dc3de617734b81 416 PRINTS PR00173 Glutamate-aspartate symporter signature 323 342 6.9E-14 T 14-10-2018 RY45_10690 68e4ddf9dae6a80412dc3de617734b81 416 PRINTS PR00173 Glutamate-aspartate symporter signature 14 34 6.9E-14 T 14-10-2018 RY45_10690 68e4ddf9dae6a80412dc3de617734b81 416 Gene3D G3DSA:1.10.3860.10 7 406 6.0E-68 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_10690 68e4ddf9dae6a80412dc3de617734b81 416 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 4 405 36.836 T 14-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 RY45_10690 68e4ddf9dae6a80412dc3de617734b81 416 SUPERFAMILY SSF118215 16 397 3.53E-95 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_10690 68e4ddf9dae6a80412dc3de617734b81 416 Pfam PF00375 Sodium:dicarboxylate symporter family 16 395 1.8E-61 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RY45_07985 80ba0028970a4992fe3a6f7cb590c9db 383 Gene3D G3DSA:1.20.1090.10 186 383 2.1E-73 T 14-10-2018 RY45_07985 80ba0028970a4992fe3a6f7cb590c9db 383 Gene3D G3DSA:3.40.50.1970 1 184 4.7E-60 T 14-10-2018 RY45_07985 80ba0028970a4992fe3a6f7cb590c9db 383 SUPERFAMILY SSF56796 3 382 5.63E-134 T 14-10-2018 RY45_07985 80ba0028970a4992fe3a6f7cb590c9db 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_07985 80ba0028970a4992fe3a6f7cb590c9db 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 375 4.4E-126 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RY45_07985 80ba0028970a4992fe3a6f7cb590c9db 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 260 280 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 8.4E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 8.4E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 8.4E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 Gene3D G3DSA:1.10.10.10 15 102 2.7E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 1.7E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 Gene3D G3DSA:3.40.190.10 171 272 4.0E-41 T 14-10-2018 RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 Pfam PF03466 LysR substrate binding domain 99 300 1.3E-23 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 SUPERFAMILY SSF53850 103 300 8.32E-27 T 14-10-2018 RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 Gene3D G3DSA:3.40.190.10 111 298 4.0E-41 T 14-10-2018 RY45_19960 42373fa919a586d1ddbee4723aee4be6 302 SUPERFAMILY SSF46785 16 98 2.66E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_16005 3e65de27c47b79d7e977373b94ec1c2b 118 Gene3D G3DSA:1.10.10.10 11 112 2.0E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16005 3e65de27c47b79d7e977373b94ec1c2b 118 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 15 91 7.7E-19 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RY45_16005 3e65de27c47b79d7e977373b94ec1c2b 118 SUPERFAMILY SSF46767 14 92 7.46E-18 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 Gene3D G3DSA:3.40.250.10 27 131 3.0E-16 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 Gene3D G3DSA:3.40.250.10 281 430 1.4E-40 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 SUPERFAMILY SSF52821 144 318 2.1E-23 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 SUPERFAMILY SSF52821 38 127 6.55E-10 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 Gene3D G3DSA:3.40.250.10 136 280 1.4E-36 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 SMART SM00450 143 264 6.1E-11 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 SMART SM00450 27 134 0.8 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 SMART SM00450 291 419 1.5E-10 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 ProSitePatterns PS00380 Rhodanese signature 1. 178 189 - T 14-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 SUPERFAMILY SSF52821 295 427 4.45E-28 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 Pfam PF00581 Rhodanese-like domain 293 415 7.3E-10 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_17890 d5bf437e4ba7e72a46f45fde43acf5c2 430 Pfam PF00581 Rhodanese-like domain 167 258 3.0E-13 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_16690 903aabd9b8697b1ad552bc366e287bd7 318 Gene3D G3DSA:3.30.450.20 12 139 3.3E-9 T 14-10-2018 RY45_16690 903aabd9b8697b1ad552bc366e287bd7 318 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 145 308 2.4E-44 T 14-10-2018 IPR000160 GGDEF domain RY45_16690 903aabd9b8697b1ad552bc366e287bd7 318 SUPERFAMILY SSF55785 15 120 3.24E-6 T 14-10-2018 IPR035965 PAS domain superfamily RY45_16690 903aabd9b8697b1ad552bc366e287bd7 318 Pfam PF00990 Diguanylate cyclase, GGDEF domain 148 306 8.5E-45 T 14-10-2018 IPR000160 GGDEF domain RY45_16690 903aabd9b8697b1ad552bc366e287bd7 318 SUPERFAMILY SSF55073 152 309 2.98E-43 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_16690 903aabd9b8697b1ad552bc366e287bd7 318 SMART SM00267 134 310 4.9E-56 T 14-10-2018 IPR000160 GGDEF domain RY45_16690 903aabd9b8697b1ad552bc366e287bd7 318 Pfam PF08448 PAS fold 24 137 1.0E-5 T 14-10-2018 IPR013656 PAS fold-4 RY45_16690 903aabd9b8697b1ad552bc366e287bd7 318 Gene3D G3DSA:3.30.70.270 140 308 1.9E-51 T 14-10-2018 RY45_01195 887986ad59e6e1273542305914c641f6 807 SMART SM00563 304 431 4.4E-26 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_01195 887986ad59e6e1273542305914c641f6 807 PIRSF PIRSF000437 19 805 2.0E-284 T 14-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 RY45_01195 887986ad59e6e1273542305914c641f6 807 Pfam PF01553 Acyltransferase 288 427 1.3E-23 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_01195 887986ad59e6e1273542305914c641f6 807 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 801 0.0 T 14-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 RY45_01195 887986ad59e6e1273542305914c641f6 807 SUPERFAMILY SSF69593 241 517 1.1E-26 T 14-10-2018 RY45_01195 887986ad59e6e1273542305914c641f6 807 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 805 29.195 T 14-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 RY45_01195 887986ad59e6e1273542305914c641f6 807 PIRSF PIRSF500064 4 804 2.7E-296 T 14-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 RY45_09390 0308b3489a5e0befd90ac667b1ec13c8 129 SUPERFAMILY SSF51230 4 128 5.32E-45 T 14-10-2018 IPR011053 Single hybrid motif RY45_09390 0308b3489a5e0befd90ac667b1ec13c8 129 Pfam PF01597 Glycine cleavage H-protein 8 128 2.3E-46 T 14-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate RY45_09390 0308b3489a5e0befd90ac667b1ec13c8 129 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RY45_09390 0308b3489a5e0befd90ac667b1ec13c8 129 Gene3D G3DSA:2.40.50.100 2 129 5.5E-52 T 14-10-2018 RY45_09390 0308b3489a5e0befd90ac667b1ec13c8 129 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 4 129 1.2E-53 T 14-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RY45_09390 0308b3489a5e0befd90ac667b1ec13c8 129 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 40.942 T 14-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RY45_14955 5edf5ffc70ca0c22de2a6dce60530d0d 341 SUPERFAMILY SSF53187 5 336 2.65E-81 T 14-10-2018 RY45_14955 5edf5ffc70ca0c22de2a6dce60530d0d 341 PIRSF PIRSF017020 1 340 9.5E-127 T 14-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 RY45_14955 5edf5ffc70ca0c22de2a6dce60530d0d 341 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 55 337 3.7E-57 T 14-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 RY45_14955 5edf5ffc70ca0c22de2a6dce60530d0d 341 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 341 153.454 T 14-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 RY45_14955 5edf5ffc70ca0c22de2a6dce60530d0d 341 Gene3D G3DSA:3.40.630.10 2 341 2.8E-114 T 14-10-2018 RY45_14955 5edf5ffc70ca0c22de2a6dce60530d0d 341 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 6 335 2.1E-104 T 14-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 RY45_05365 257713896925d8bc3806b87217ea8be0 697 Pfam PF00593 TonB dependent receptor 233 695 1.4E-56 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_05365 257713896925d8bc3806b87217ea8be0 697 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 38 697 9.0E-135 T 14-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 RY45_05365 257713896925d8bc3806b87217ea8be0 697 SUPERFAMILY SSF56935 23 697 6.11E-118 T 14-10-2018 RY45_05365 257713896925d8bc3806b87217ea8be0 697 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 31 697 3.2E-131 T 14-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 RY45_05365 257713896925d8bc3806b87217ea8be0 697 Gene3D G3DSA:2.40.170.20 166 697 1.6E-97 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_05365 257713896925d8bc3806b87217ea8be0 697 Gene3D G3DSA:2.170.130.10 30 154 5.7E-36 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_05365 257713896925d8bc3806b87217ea8be0 697 Pfam PF07715 TonB-dependent Receptor Plug Domain 44 149 2.6E-29 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 SUPERFAMILY SSF47384 264 322 1.1E-9 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 SMART SM00388 280 338 2.1E-5 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 378 480 1.8E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 425 7.7E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 439 7.7E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 460 7.7E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 466 479 7.7E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 SUPERFAMILY SSF55874 339 480 8.25E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 SMART SM00387 377 481 3.7E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 Gene3D G3DSA:3.30.565.10 341 481 1.3E-27 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 Pfam PF00672 HAMP domain 227 276 2.6E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 Pfam PF00512 His Kinase A (phospho-acceptor) domain 281 334 1.9E-6 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 SMART SM00304 227 279 4.5E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_00975 16c4acdb39b5ca58b02d58f03ce5a0dc 481 Gene3D G3DSA:1.10.287.130 231 338 5.1E-17 T 14-10-2018 RY45_03710 88ea9db8bc09c42311c1bdb2ce93174b 301 Pfam PF04261 Dyp-type peroxidase family 41 295 8.0E-67 T 14-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RY45_03710 88ea9db8bc09c42311c1bdb2ce93174b 301 SUPERFAMILY SSF54909 3 296 3.75E-95 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_03710 88ea9db8bc09c42311c1bdb2ce93174b 301 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 4 294 8.4E-66 T 14-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 Gene3D G3DSA:2.40.50.140 1 65 3.2E-26 T 14-10-2018 RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.0E-28 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 SUPERFAMILY SSF50249 1 64 7.07E-23 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 PIRSF PIRSF002599 1 72 7.8E-23 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 SMART SM00357 3 67 2.3E-26 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 PRINTS PR00050 Cold shock protein signature 4 19 2.1E-15 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 PRINTS PR00050 Cold shock protein signature 25 34 2.1E-15 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 PRINTS PR00050 Cold shock protein signature 40 58 2.1E-15 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 14-10-2018 IPR019844 Cold-shock conserved site RY45_09975 47a55b494a1f42dc1d08725fb833503c 72 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 66 2.2E-40 T 14-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 953 28.642 T 14-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Gene3D G3DSA:3.40.50.300 416 621 1.2E-44 T 14-10-2018 RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Gene3D G3DSA:3.40.50.10810 149 415 4.2E-96 T 14-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RY45_04825 9625e9d1a01b01278f181015fd08862b 955 SMART SM00490 505 589 1.1E-13 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Gene3D G3DSA:2.30.30.140 1 53 4.5E-24 T 14-10-2018 RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Gene3D G3DSA:3.30.360.80 702 775 2.6E-30 T 14-10-2018 RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Gene3D G3DSA:2.30.30.930 55 113 7.7E-26 T 14-10-2018 RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Pfam PF00271 Helicase conserved C-terminal domain 479 589 1.0E-14 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Pfam PF00176 SNF2 family N-terminal domain 173 341 1.4E-15 T 14-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RY45_04825 9625e9d1a01b01278f181015fd08862b 955 SUPERFAMILY SSF52540 272 632 8.29E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04825 9625e9d1a01b01278f181015fd08862b 955 Pfam PF12137 RNA polymerase recycling family C-terminal 593 952 4.7E-142 T 14-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 RY45_04825 9625e9d1a01b01278f181015fd08862b 955 SMART SM00487 149 341 4.1E-19 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_04825 9625e9d1a01b01278f181015fd08862b 955 SUPERFAMILY SSF52540 127 353 5.22E-36 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 27 550 8.3E-293 T 14-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 Gene3D G3DSA:3.90.800.10 100 208 3.9E-106 T 14-10-2018 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 SUPERFAMILY SSF52374 27 345 1.55E-102 T 14-10-2018 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 SUPERFAMILY SSF50715 339 546 1.73E-75 T 14-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 Gene3D G3DSA:2.40.240.10 347 463 2.9E-79 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 339 527 2.4E-61 T 14-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 Gene3D G3DSA:3.40.50.620 29 246 3.9E-106 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 209 219 7.4E-10 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 30 42 7.4E-10 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 44 55 7.4E-10 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 59 72 7.4E-10 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 548 53.065 T 14-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 Gene3D G3DSA:2.40.240.10 339 545 2.9E-79 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 Gene3D G3DSA:1.10.1160.10 260 338 1.1E-36 T 14-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 27 336 8.1E-127 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 RY45_08315 bf59f16ff333a792a5ca83eb63ee47f9 553 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 33 44 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_19325 c25fdec339374e8c202c4daf5d645d9b 193 Pfam PF03167 Uracil DNA glycosylase superfamily 31 184 5.0E-25 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_19325 c25fdec339374e8c202c4daf5d645d9b 193 SMART SM00986 28 185 2.5E-32 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_19325 c25fdec339374e8c202c4daf5d645d9b 193 SMART SM00987 28 185 2.5E-32 T 14-10-2018 RY45_19325 c25fdec339374e8c202c4daf5d645d9b 193 SUPERFAMILY SSF52141 4 191 2.49E-60 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_19325 c25fdec339374e8c202c4daf5d645d9b 193 Gene3D G3DSA:3.40.470.10 1 193 2.1E-74 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_01320 a1b0b001f8a6f14af947a136f9757784 481 Pfam PF13520 Amino acid permease 11 430 7.6E-28 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_01320 a1b0b001f8a6f14af947a136f9757784 481 PIRSF PIRSF006060 1 475 2.8E-49 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_01320 a1b0b001f8a6f14af947a136f9757784 481 Gene3D G3DSA:1.20.1740.10 7 470 8.8E-6 T 14-10-2018 RY45_11535 ffc7381d89e8f7576fc01520784032c1 295 Gene3D G3DSA:3.20.20.60 4 295 1.7E-99 T 14-10-2018 RY45_11535 ffc7381d89e8f7576fc01520784032c1 295 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 9 292 1.1E-124 T 14-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 RY45_11535 ffc7381d89e8f7576fc01520784032c1 295 SUPERFAMILY SSF51621 10 291 3.23E-96 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_11535 ffc7381d89e8f7576fc01520784032c1 295 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 6 293 48.452 T 14-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 RY45_11535 ffc7381d89e8f7576fc01520784032c1 295 ProSitePatterns PS00161 Isocitrate lyase signature. 122 127 - T 14-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 RY45_11535 ffc7381d89e8f7576fc01520784032c1 295 Pfam PF13714 Phosphoenolpyruvate phosphomutase 14 255 9.4E-47 T 14-10-2018 RY45_09730 2afb0c2407e84cb9935f3462d2774d69 242 Gene3D G3DSA:3.10.310.50 20 164 1.5E-53 T 14-10-2018 RY45_09730 2afb0c2407e84cb9935f3462d2774d69 242 Pfam PF04536 TPM domain 32 155 3.5E-41 T 14-10-2018 IPR007621 TPM domain RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 SUPERFAMILY SSF53850 88 321 3.07E-42 T 14-10-2018 RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 Gene3D G3DSA:1.10.10.10 1 87 5.7E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 5.2E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 Gene3D G3DSA:3.40.190.10 92 303 7.1E-100 T 14-10-2018 RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 Gene3D G3DSA:3.40.190.10 167 267 7.1E-100 T 14-10-2018 RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 SUPERFAMILY SSF46785 1 113 4.77E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.4E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.4E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.4E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09825 ed41141b7aa573b1b6ee27b4e707e917 324 Pfam PF03466 LysR substrate binding domain 90 291 4.8E-39 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 SUPERFAMILY SSF55874 259 424 9.3E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 SMART SM00387 315 427 1.3E-32 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 SUPERFAMILY SSF47384 192 269 6.47E-20 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 424 1.6E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 380 1.6E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 352 366 1.6E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 405 1.6E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 Gene3D G3DSA:3.30.450.20 84 201 2.2E-7 T 14-10-2018 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 315 424 2.4E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 SUPERFAMILY SSF55785 87 197 1.92E-10 T 14-10-2018 IPR035965 PAS domain superfamily RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 Pfam PF00989 PAS fold 99 150 8.9E-6 T 14-10-2018 IPR013767 PAS fold GO:0006355 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 96 422 6.7E-134 T 14-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 Pfam PF00512 His Kinase A (phospho-acceptor) domain 206 269 1.7E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 Gene3D G3DSA:1.10.287.130 202 270 3.1E-21 T 14-10-2018 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 SMART SM00388 205 270 1.1E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 Gene3D G3DSA:3.30.565.10 284 428 3.8E-37 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_06685 edc7cdd0dbd1bce2e6a8a77f479270b4 431 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 2.9E-30 T 14-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 Pfam PF01235 Sodium:alanine symporter family 57 453 9.1E-145 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 PRINTS PR00175 Sodium/alanine symporter signature 352 374 9.3E-54 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 PRINTS PR00175 Sodium/alanine symporter signature 92 114 9.3E-54 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 PRINTS PR00175 Sodium/alanine symporter signature 184 202 9.3E-54 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 PRINTS PR00175 Sodium/alanine symporter signature 411 431 9.3E-54 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 PRINTS PR00175 Sodium/alanine symporter signature 212 231 9.3E-54 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 PRINTS PR00175 Sodium/alanine symporter signature 307 325 9.3E-54 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 92 107 - T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_06790 c7fa38d958c53e09b724c150baea8b44 456 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 442 7.9E-160 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 326 338 - T 14-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 Pfam PF00875 DNA photolyase 3 162 1.5E-47 T 14-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 346 365 - T 14-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 SUPERFAMILY SSF48173 201 471 4.84E-108 T 14-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 PRINTS PR00147 DNA photolyase signature 385 399 1.3E-28 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 PRINTS PR00147 DNA photolyase signature 346 364 1.3E-28 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 PRINTS PR00147 DNA photolyase signature 326 342 1.3E-28 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 PRINTS PR00147 DNA photolyase signature 142 158 1.3E-28 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 Gene3D G3DSA:1.10.579.10 294 473 2.4E-79 T 14-10-2018 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 SUPERFAMILY SSF52425 2 184 6.54E-51 T 14-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 Pfam PF03441 FAD binding domain of DNA photolyase 276 469 1.4E-81 T 14-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 Gene3D G3DSA:1.25.40.80 131 290 2.4E-79 T 14-10-2018 RY45_05875 0b247ce0da0fec7099578f0048efae7a 473 Gene3D G3DSA:3.40.50.620 3 205 2.4E-79 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_00685 98567079478bbc62fabbb17487fb9b50 125 TIGRFAM TIGR00494 crcB: protein CrcB 5 120 3.3E-30 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RY45_00685 98567079478bbc62fabbb17487fb9b50 125 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 4 122 19.378 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RY45_00685 98567079478bbc62fabbb17487fb9b50 125 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 117 2.7E-24 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RY45_12510 bada8d4ab9c5aece5683462a96cc9936 140 SMART SM00422 16 83 1.6E-20 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_12510 bada8d4ab9c5aece5683462a96cc9936 140 Pfam PF13411 MerR HTH family regulatory protein 16 81 1.0E-16 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_12510 bada8d4ab9c5aece5683462a96cc9936 140 SUPERFAMILY SSF46955 16 128 8.42E-27 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_12510 bada8d4ab9c5aece5683462a96cc9936 140 Gene3D G3DSA:1.10.1660.10 9 136 9.1E-29 T 14-10-2018 RY45_21265 a3d565cf00fd2b6a2ba3a1f652bc1218 435 Pfam PF03313 Serine dehydratase alpha chain 92 423 4.8E-52 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit RY45_21265 a3d565cf00fd2b6a2ba3a1f652bc1218 435 PIRSF PIRSF006054 5 430 2.3E-157 T 14-10-2018 IPR021144 Uncharacterised protein family UPF0597 RY45_21265 a3d565cf00fd2b6a2ba3a1f652bc1218 435 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 9 428 36.236 T 14-10-2018 IPR021144 Uncharacterised protein family UPF0597 RY45_09360 ff4ae94991b589c3b33bc3762dee9400 399 Gene3D G3DSA:1.20.1720.10 9 387 3.6E-101 T 14-10-2018 RY45_09360 ff4ae94991b589c3b33bc3762dee9400 399 Pfam PF07690 Major Facilitator Superfamily 14 353 1.9E-44 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_09360 ff4ae94991b589c3b33bc3762dee9400 399 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 6 386 5.9E-63 T 14-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 RY45_09360 ff4ae94991b589c3b33bc3762dee9400 399 SUPERFAMILY SSF103473 3 390 7.85E-58 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_14760 f2b284ee8754d07f7a0057d0199a212d 818 SUPERFAMILY SSF47203 361 508 3.06E-22 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RY45_14760 f2b284ee8754d07f7a0057d0199a212d 818 Gene3D G3DSA:1.20.140.10 361 508 2.4E-100 T 14-10-2018 RY45_14760 f2b284ee8754d07f7a0057d0199a212d 818 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 361 508 5.5E-12 T 14-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RY45_14760 f2b284ee8754d07f7a0057d0199a212d 818 Pfam PF09317 Domain of unknown function (DUF1974) 515 797 3.5E-117 T 14-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 RY45_14760 f2b284ee8754d07f7a0057d0199a212d 818 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 136 233 1.4E-15 T 14-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RY45_14760 f2b284ee8754d07f7a0057d0199a212d 818 SUPERFAMILY SSF56645 121 356 1.44E-44 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RY45_14760 f2b284ee8754d07f7a0057d0199a212d 818 Gene3D G3DSA:2.40.110.10 237 360 2.4E-100 T 14-10-2018 RY45_14760 f2b284ee8754d07f7a0057d0199a212d 818 Gene3D G3DSA:1.10.540.10 123 236 2.4E-100 T 14-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RY45_02985 1285036f2744c9c1c76604e9ae0733c1 422 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_02985 1285036f2744c9c1c76604e9ae0733c1 422 Gene3D G3DSA:3.90.1150.10 289 422 2.4E-52 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_02985 1285036f2744c9c1c76604e9ae0733c1 422 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 421 2.1E-138 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_02985 1285036f2744c9c1c76604e9ae0733c1 422 Gene3D G3DSA:3.40.640.10 1 285 1.1E-100 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_02985 1285036f2744c9c1c76604e9ae0733c1 422 SUPERFAMILY SSF53383 1 421 1.16E-126 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_02985 1285036f2744c9c1c76604e9ae0733c1 422 PIRSF PIRSF001434 1 422 3.0E-129 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RY45_02985 1285036f2744c9c1c76604e9ae0733c1 422 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 4 421 2.3E-197 T 14-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 RY45_12470 0109c9dc10ffd87c8a692b9363617e26 270 SUPERFAMILY SSF52096 2 257 4.81E-78 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_12470 0109c9dc10ffd87c8a692b9363617e26 270 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 14-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RY45_12470 0109c9dc10ffd87c8a692b9363617e26 270 Gene3D G3DSA:3.90.226.10 1 256 2.3E-79 T 14-10-2018 RY45_12470 0109c9dc10ffd87c8a692b9363617e26 270 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 255 1.4E-54 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RY45_12830 bd0e59bd83a2d90d808b1655360078f1 355 Pfam PF01032 FecCD transport family 44 349 2.9E-69 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RY45_12830 bd0e59bd83a2d90d808b1655360078f1 355 SUPERFAMILY SSF81345 26 349 6.41E-59 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_12830 bd0e59bd83a2d90d808b1655360078f1 355 Gene3D G3DSA:1.10.3470.10 30 355 1.4E-69 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_05520 09d71a4f5a2616cc76d10227478115a0 268 Gene3D G3DSA:1.10.287.460 34 148 1.3E-30 T 14-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 RY45_05520 09d71a4f5a2616cc76d10227478115a0 268 Gene3D G3DSA:3.10.50.40 149 255 1.9E-42 T 14-10-2018 RY45_05520 09d71a4f5a2616cc76d10227478115a0 268 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 40 160 2.2E-35 T 14-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 RY45_05520 09d71a4f5a2616cc76d10227478115a0 268 SUPERFAMILY SSF54534 51 256 4.91E-64 T 14-10-2018 RY45_05520 09d71a4f5a2616cc76d10227478115a0 268 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 168 254 1.6E-27 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RY45_22070 1c522e2b2345bd6435e0caf7bdc98824 435 PIRSF PIRSF037714 15 435 1.3E-129 T 14-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein RY45_22070 1c522e2b2345bd6435e0caf7bdc98824 435 Pfam PF01618 MotA/TolQ/ExbB proton channel family 299 413 6.2E-30 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_20675 f90df768a699044b485906cad68876fb 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 161 215 1.2E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_20675 f90df768a699044b485906cad68876fb 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 203 2.9E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_20675 f90df768a699044b485906cad68876fb 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 175 2.9E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_20675 f90df768a699044b485906cad68876fb 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 191 2.9E-13 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_20675 f90df768a699044b485906cad68876fb 219 SUPERFAMILY SSF46894 146 217 2.69E-20 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_20675 f90df768a699044b485906cad68876fb 219 SMART SM00421 158 215 3.0E-23 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_20675 f90df768a699044b485906cad68876fb 219 Gene3D G3DSA:1.10.10.10 155 218 1.0E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_20675 f90df768a699044b485906cad68876fb 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 175 202 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_20675 f90df768a699044b485906cad68876fb 219 Gene3D G3DSA:3.40.50.2300 13 151 1.1E-30 T 14-10-2018 RY45_12255 560c4fdb6eb875921ac9a6ef02d25249 68 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 68 29.342 T 14-10-2018 IPR009624 Uncharacterised protein family UPF0253 RY45_12255 560c4fdb6eb875921ac9a6ef02d25249 68 Pfam PF06786 Uncharacterised protein family (UPF0253) 1 67 3.1E-33 T 14-10-2018 IPR009624 Uncharacterised protein family UPF0253 RY45_12255 560c4fdb6eb875921ac9a6ef02d25249 68 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 7 65 1.0E-15 T 14-10-2018 IPR009624 Uncharacterised protein family UPF0253 RY45_21885 8dce65ad364e5af818175bbae9748147 511 SUPERFAMILY SSF161098 317 496 4.06E-28 T 14-10-2018 IPR035906 MetI-like superfamily RY45_21885 8dce65ad364e5af818175bbae9748147 511 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 271 498 4.4E-66 T 14-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RY45_21885 8dce65ad364e5af818175bbae9748147 511 SUPERFAMILY SSF161098 59 254 1.44E-20 T 14-10-2018 IPR035906 MetI-like superfamily RY45_21885 8dce65ad364e5af818175bbae9748147 511 Gene3D G3DSA:1.10.3720.10 310 499 4.8E-27 T 14-10-2018 IPR035906 MetI-like superfamily RY45_21885 8dce65ad364e5af818175bbae9748147 511 Gene3D G3DSA:1.10.3720.10 51 261 4.4E-22 T 14-10-2018 IPR035906 MetI-like superfamily RY45_21885 8dce65ad364e5af818175bbae9748147 511 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 350 490 1.2E-10 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_21885 8dce65ad364e5af818175bbae9748147 511 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 258 9.9E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_16430 651d23d0e08f46fe75f8dfa0553019bd 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 7.3E-92 T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RY45_16430 651d23d0e08f46fe75f8dfa0553019bd 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 6.1E-98 T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RY45_16430 651d23d0e08f46fe75f8dfa0553019bd 224 Gene3D G3DSA:3.20.20.70 5 222 4.6E-83 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_16430 651d23d0e08f46fe75f8dfa0553019bd 224 SUPERFAMILY SSF51366 4 218 5.89E-74 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RY45_16430 651d23d0e08f46fe75f8dfa0553019bd 224 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RY45_16430 651d23d0e08f46fe75f8dfa0553019bd 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RY45_16430 651d23d0e08f46fe75f8dfa0553019bd 224 PIRSF PIRSF001461 1 224 2.5E-104 T 14-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RY45_17175 17f752ea2e85062722de171fa881f54d 369 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 5 199 9.9E-74 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17175 17f752ea2e85062722de171fa881f54d 369 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.481 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17175 17f752ea2e85062722de171fa881f54d 369 PIRSF PIRSF001259 1 368 1.6E-129 T 14-10-2018 RY45_17175 17f752ea2e85062722de171fa881f54d 369 Pfam PF00925 GTP cyclohydrolase II 208 367 3.1E-37 T 14-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RY45_17175 17f752ea2e85062722de171fa881f54d 369 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 1.1E-82 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17175 17f752ea2e85062722de171fa881f54d 369 SUPERFAMILY SSF55821 3 203 9.61E-86 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RY45_17175 17f752ea2e85062722de171fa881f54d 369 Gene3D G3DSA:3.90.870.10 1 205 4.6E-86 T 14-10-2018 RY45_17175 17f752ea2e85062722de171fa881f54d 369 Gene3D G3DSA:3.40.50.10990 206 368 5.7E-29 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RY45_17175 17f752ea2e85062722de171fa881f54d 369 SUPERFAMILY SSF142695 205 367 5.75E-47 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 SUPERFAMILY SSF54747 3 73 8.11E-30 T 14-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 4.0E-15 T 14-10-2018 RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 SMART SM00649 9 141 1.5E-83 T 14-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 5.3E-24 T 14-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 SUPERFAMILY SSF46906 68 141 1.57E-25 T 14-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 14-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 Gene3D G3DSA:1.10.10.250 73 141 3.3E-27 T 14-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 142 5.8E-65 T 14-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 8.5E-29 T 14-10-2018 IPR020784 Ribosomal protein L11, N-terminal RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 Gene3D G3DSA:3.30.1550.10 2 72 2.2E-34 T 14-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RY45_21065 16f6e22b4f15fc9a3c7f3f211e0a84a9 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.869 T 14-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RY45_16080 707aaf842f869a3e08f643880551c852 436 SUPERFAMILY SSF51261 148 390 1.05E-70 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_16080 707aaf842f869a3e08f643880551c852 436 Pfam PF01551 Peptidase family M23 295 389 1.1E-30 T 14-10-2018 IPR016047 Peptidase M23 RY45_16080 707aaf842f869a3e08f643880551c852 436 Gene3D G3DSA:3.10.450.350 69 153 2.0E-10 T 14-10-2018 RY45_16080 707aaf842f869a3e08f643880551c852 436 Pfam PF04225 Opacity-associated protein A LysM-like domain 76 151 6.9E-6 T 14-10-2018 IPR007340 Opacity-associated protein A RY45_16080 707aaf842f869a3e08f643880551c852 436 Gene3D G3DSA:2.70.70.10 266 395 1.4E-82 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_16080 707aaf842f869a3e08f643880551c852 436 Pfam PF08525 Opacity-associated protein A N-terminal motif 7 33 8.2E-8 T 14-10-2018 IPR013731 Opacity-associated protein A, N-terminal RY45_16080 707aaf842f869a3e08f643880551c852 436 Gene3D G3DSA:3.10.450.350 173 410 1.4E-82 T 14-10-2018 RY45_03380 c5ca8b9cca830236ddfaa73ab2f50e09 107 SUPERFAMILY SSF47598 4 104 1.49E-54 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RY45_03380 c5ca8b9cca830236ddfaa73ab2f50e09 107 Pfam PF01340 Met Apo-repressor, MetJ 4 98 2.5E-56 T 14-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 RY45_03380 c5ca8b9cca830236ddfaa73ab2f50e09 107 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 11 102 2.0E-42 T 14-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 RY45_03380 c5ca8b9cca830236ddfaa73ab2f50e09 107 Gene3D G3DSA:1.10.140.10 3 106 3.9E-53 T 14-10-2018 IPR023453 Methionine repressor MetJ domain superfamily RY45_05830 ee9d742b7c354f0d02afa53670783a3d 143 Pfam PF02169 LPP20 lipoprotein 52 128 1.6E-9 T 14-10-2018 IPR024952 Lipoprotein LPP20-like RY45_05830 ee9d742b7c354f0d02afa53670783a3d 143 PIRSF PIRSF028687 1 142 5.2E-35 T 14-10-2018 IPR007293 Flagellar protein FlgP RY45_17985 8df1ec36023f6de7bcb3e844cbfed868 106 Pfam PF12836 Helix-hairpin-helix motif 42 103 2.1E-23 T 14-10-2018 RY45_17985 8df1ec36023f6de7bcb3e844cbfed868 106 SMART SM00278 83 102 32.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_17985 8df1ec36023f6de7bcb3e844cbfed868 106 SMART SM00278 53 72 0.0029 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RY45_17985 8df1ec36023f6de7bcb3e844cbfed868 106 Gene3D G3DSA:1.10.150.320 28 103 2.3E-23 T 14-10-2018 RY45_17985 8df1ec36023f6de7bcb3e844cbfed868 106 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 41 105 3.6E-25 T 14-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain RY45_17985 8df1ec36023f6de7bcb3e844cbfed868 106 SUPERFAMILY SSF47781 33 105 6.0E-31 T 14-10-2018 IPR010994 RuvA domain 2-like RY45_16660 76c8de90cee6e6a205312eb81509731f 156 Pfam PF13488 Glycine zipper 83 123 2.6E-5 T 14-10-2018 IPR039567 Glycine zipper domain RY45_20575 0f84cd23fa65c03f99570ec1ba83f196 418 SUPERFAMILY SSF55205 1 417 2.45E-143 T 14-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RY45_20575 0f84cd23fa65c03f99570ec1ba83f196 418 Gene3D G3DSA:3.65.10.10 12 413 8.4E-165 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RY45_20575 0f84cd23fa65c03f99570ec1ba83f196 418 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 1.3E-179 T 14-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_20575 0f84cd23fa65c03f99570ec1ba83f196 418 Gene3D G3DSA:3.65.10.10 21 228 8.4E-165 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RY45_20575 0f84cd23fa65c03f99570ec1ba83f196 418 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 44.204 T 14-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_20575 0f84cd23fa65c03f99570ec1ba83f196 418 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 9 406 1.0E-114 T 14-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RY45_12880 cd6705f8a2c7cb76025a5e6a119351ee 397 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 113 389 5.8E-95 T 14-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RY45_12880 cd6705f8a2c7cb76025a5e6a119351ee 397 Gene3D G3DSA:3.60.120.10 3 392 3.9E-122 T 14-10-2018 IPR005801 ADC synthase GO:0009058 RY45_12880 cd6705f8a2c7cb76025a5e6a119351ee 397 SUPERFAMILY SSF56322 45 392 1.7E-98 T 14-10-2018 IPR005801 ADC synthase GO:0009058 RY45_12880 cd6705f8a2c7cb76025a5e6a119351ee 397 Pfam PF00425 chorismate binding enzyme 127 381 2.2E-76 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RY45_00095 12ef96a346aba27459906149f3a9e44f 665 SMART SM00304 187 246 0.0032 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_00095 12ef96a346aba27459906149f3a9e44f 665 SUPERFAMILY SSF55785 248 369 6.28E-17 T 14-10-2018 IPR035965 PAS domain superfamily RY45_00095 12ef96a346aba27459906149f3a9e44f 665 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 662 6.0E-22 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00095 12ef96a346aba27459906149f3a9e44f 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 592 606 2.3E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00095 12ef96a346aba27459906149f3a9e44f 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 648 661 2.3E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00095 12ef96a346aba27459906149f3a9e44f 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 610 620 2.3E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00095 12ef96a346aba27459906149f3a9e44f 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 623 641 2.3E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00095 12ef96a346aba27459906149f3a9e44f 665 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 263 377 2.2E-10 T 14-10-2018 IPR000014 PAS domain RY45_00095 12ef96a346aba27459906149f3a9e44f 665 SMART SM00091 259 327 0.0027 T 14-10-2018 IPR000014 PAS domain RY45_00095 12ef96a346aba27459906149f3a9e44f 665 Gene3D G3DSA:3.30.450.20 246 402 1.8E-18 T 14-10-2018 RY45_00095 12ef96a346aba27459906149f3a9e44f 665 Pfam PF13426 PAS domain 273 369 7.9E-9 T 14-10-2018 IPR000014 PAS domain RY45_00095 12ef96a346aba27459906149f3a9e44f 665 Pfam PF17149 Periplasmic sensor domain found in signal transduction proteins 54 159 6.1E-18 T 14-10-2018 IPR033414 Periplasmic sensor domain RY45_00095 12ef96a346aba27459906149f3a9e44f 665 Gene3D G3DSA:3.30.565.10 510 665 5.9E-35 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00095 12ef96a346aba27459906149f3a9e44f 665 Gene3D G3DSA:1.10.287.130 403 503 2.0E-20 T 14-10-2018 RY45_00095 12ef96a346aba27459906149f3a9e44f 665 SMART SM00387 551 664 6.1E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00095 12ef96a346aba27459906149f3a9e44f 665 SUPERFAMILY SSF55874 513 662 1.02E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_10705 23852b7419e090a473238159f4175188 428 SUPERFAMILY SSF56322 1 425 5.76E-136 T 14-10-2018 IPR005801 ADC synthase GO:0009058 RY45_10705 23852b7419e090a473238159f4175188 428 Pfam PF04715 Anthranilate synthase component I, N terminal region 1 122 1.5E-19 T 14-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_10705 23852b7419e090a473238159f4175188 428 Gene3D G3DSA:3.60.120.10 1 426 3.5E-160 T 14-10-2018 IPR005801 ADC synthase GO:0009058 RY45_10705 23852b7419e090a473238159f4175188 428 Pfam PF00425 chorismate binding enzyme 162 416 1.2E-94 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RY45_10705 23852b7419e090a473238159f4175188 428 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 77 420 2.2E-123 T 14-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 RY45_10705 23852b7419e090a473238159f4175188 428 PRINTS PR00095 Anthranilate synthase component I signature 278 291 1.7E-17 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_10705 23852b7419e090a473238159f4175188 428 PRINTS PR00095 Anthranilate synthase component I signature 373 387 1.7E-17 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_10705 23852b7419e090a473238159f4175188 428 PRINTS PR00095 Anthranilate synthase component I signature 264 277 1.7E-17 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_10705 23852b7419e090a473238159f4175188 428 PRINTS PR00095 Anthranilate synthase component I signature 358 372 1.7E-17 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_17960 52f4fbbf23db335cc61435df1542f33e 211 Pfam PF03006 Haemolysin-III related 9 203 6.6E-39 T 14-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RY45_17960 52f4fbbf23db335cc61435df1542f33e 211 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 11 210 1.6E-69 T 14-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 RY45_07270 f63c9f64d49791e402c5377f81ab6722 473 SMART SM00962 254 447 3.0E-68 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_07270 f63c9f64d49791e402c5377f81ab6722 473 SUPERFAMILY SSF52540 250 444 3.5E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07270 f63c9f64d49791e402c5377f81ab6722 473 Gene3D G3DSA:1.20.120.1380 227 438 6.9E-61 T 14-10-2018 RY45_07270 f63c9f64d49791e402c5377f81ab6722 473 Pfam PF00448 SRP54-type protein, GTPase domain 257 445 1.7E-40 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RY45_07270 f63c9f64d49791e402c5377f81ab6722 473 Gene3D G3DSA:3.40.50.300 249 435 6.9E-61 T 14-10-2018 RY45_07270 f63c9f64d49791e402c5377f81ab6722 473 SMART SM00382 253 394 2.4E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_07270 f63c9f64d49791e402c5377f81ab6722 473 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 2 342 3.7E-89 T 14-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 RY45_18290 388ff32870b3ca5aeba5d6a8f5fd8d29 415 Pfam PF02687 FtsX-like permease family 313 406 1.4E-10 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RY45_18290 388ff32870b3ca5aeba5d6a8f5fd8d29 415 Pfam PF12704 MacB-like periplasmic core domain 17 204 2.3E-12 T 14-10-2018 IPR025857 MacB-like periplasmic core domain RY45_21205 486c18084e165fae5ad5e57f58d91ccc 134 Gene3D G3DSA:3.10.580.10 1 131 1.7E-28 T 14-10-2018 RY45_21205 486c18084e165fae5ad5e57f58d91ccc 134 SMART SM00116 11 59 0.069 T 14-10-2018 IPR000644 CBS domain RY45_21205 486c18084e165fae5ad5e57f58d91ccc 134 SMART SM00116 78 125 0.0059 T 14-10-2018 IPR000644 CBS domain RY45_21205 486c18084e165fae5ad5e57f58d91ccc 134 Pfam PF00571 CBS domain 71 124 1.7E-11 T 14-10-2018 IPR000644 CBS domain RY45_21205 486c18084e165fae5ad5e57f58d91ccc 134 Pfam PF00571 CBS domain 5 55 1.8E-6 T 14-10-2018 IPR000644 CBS domain RY45_21205 486c18084e165fae5ad5e57f58d91ccc 134 SUPERFAMILY SSF54631 1 128 5.43E-30 T 14-10-2018 RY45_14165 c32fc651edb9e11e672da7c42202c42c 234 Pfam PF04402 Protein of unknown function (DUF541) 29 231 8.9E-42 T 14-10-2018 IPR007497 Protein of unknown function DUF541 RY45_14165 c32fc651edb9e11e672da7c42202c42c 234 Gene3D G3DSA:3.30.70.2970 40 147 5.7E-49 T 14-10-2018 RY45_14165 c32fc651edb9e11e672da7c42202c42c 234 Gene3D G3DSA:3.30.110.170 30 231 5.7E-49 T 14-10-2018 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 Pfam PF00140 Sigma-70 factor, region 1.2 20 47 6.7E-8 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 Gene3D G3DSA:1.10.601.10 14 123 6.4E-29 T 14-10-2018 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 Pfam PF04545 Sigma-70, region 4 228 279 2.0E-16 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 PIRSF PIRSF000770 8 284 1.3E-35 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 Gene3D G3DSA:1.10.10.10 213 284 1.5E-16 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 3 284 53.094 T 14-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 Pfam PF04542 Sigma-70 region 2 54 123 1.7E-17 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 SUPERFAMILY SSF88659 197 283 3.36E-20 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 282 4.3E-38 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 PRINTS PR00046 Major sigma-70 factor signature 267 278 7.3E-19 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 PRINTS PR00046 Major sigma-70 factor signature 232 244 7.3E-19 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 PRINTS PR00046 Major sigma-70 factor signature 252 267 7.3E-19 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 PRINTS PR00046 Major sigma-70 factor signature 78 91 7.3E-19 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 SUPERFAMILY SSF88946 14 123 5.1E-40 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RY45_02155 fffb8b9c022e80874afcaf8d5ddefd1a 284 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 283 3.3E-128 T 14-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 RY45_04425 b96ffe5369996b568a5826789377b473 590 Gene3D G3DSA:2.60.40.1250 36 170 8.1E-40 T 14-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily RY45_04425 b96ffe5369996b568a5826789377b473 590 Gene3D G3DSA:3.40.30.10 465 589 3.1E-32 T 14-10-2018 RY45_04425 b96ffe5369996b568a5826789377b473 590 SUPERFAMILY SSF74863 42 154 1.06E-34 T 14-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily RY45_04425 b96ffe5369996b568a5826789377b473 590 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 196 400 6.0E-16 T 14-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RY45_04425 b96ffe5369996b568a5826789377b473 590 SUPERFAMILY SSF52833 472 588 3.95E-24 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_04425 b96ffe5369996b568a5826789377b473 590 Pfam PF11412 Disulphide bond corrector protein DsbC 43 154 1.5E-32 T 14-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RY45_04425 b96ffe5369996b568a5826789377b473 590 Pfam PF13899 Thioredoxin-like 487 562 2.3E-11 T 14-10-2018 RY45_04425 b96ffe5369996b568a5826789377b473 590 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 3 590 35.754 T 14-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 RY45_04425 b96ffe5369996b568a5826789377b473 590 ProSitePatterns PS00194 Thioredoxin family active site. 498 516 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RY45_15125 465878a1776bad6f04537ac684595525 502 Gene3D G3DSA:3.20.20.70 297 496 1.2E-173 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_15125 465878a1776bad6f04537ac684595525 502 SUPERFAMILY SSF51366 297 500 6.12E-56 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RY45_15125 465878a1776bad6f04537ac684595525 502 SUPERFAMILY SSF51366 44 293 3.86E-82 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RY45_15125 465878a1776bad6f04537ac684595525 502 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 298 496 8.1E-49 T 14-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 RY45_15125 465878a1776bad6f04537ac684595525 502 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 91 109 - T 14-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 RY45_15125 465878a1776bad6f04537ac684595525 502 Gene3D G3DSA:3.20.20.70 49 296 1.2E-173 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_15125 465878a1776bad6f04537ac684595525 502 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 296 502 32.773 T 14-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 RY45_15125 465878a1776bad6f04537ac684595525 502 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 44 295 34.694 T 14-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RY45_15125 465878a1776bad6f04537ac684595525 502 Pfam PF00218 Indole-3-glycerol phosphate synthase 46 293 4.9E-95 T 14-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 Gene3D G3DSA:3.30.830.10 472 854 1.5E-109 T 14-10-2018 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 44 67 - T 14-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 Gene3D G3DSA:3.30.830.10 2 239 1.7E-79 T 14-10-2018 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 Pfam PF00675 Insulinase (Peptidase family M16) 23 160 2.5E-34 T 14-10-2018 IPR011765 Peptidase M16, N-terminal RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 SUPERFAMILY SSF63411 235 470 5.21E-74 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 Gene3D G3DSA:3.30.830.10 242 470 2.6E-71 T 14-10-2018 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 Pfam PF05193 Peptidase M16 inactive domain 651 796 1.3E-7 T 14-10-2018 IPR007863 Peptidase M16, C-terminal RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 Pfam PF05193 Peptidase M16 inactive domain 184 361 1.0E-14 T 14-10-2018 IPR007863 Peptidase M16, C-terminal RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 SUPERFAMILY SSF63411 2 231 6.05E-59 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 Gene3D G3DSA:3.30.830.10 620 881 1.5E-109 T 14-10-2018 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 SUPERFAMILY SSF63411 704 899 1.15E-40 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 Pfam PF16187 Middle or third domain of peptidase_M16 368 645 5.1E-80 T 14-10-2018 IPR032632 Peptidase M16, middle/third domain RY45_12685 8cdae42a8015138f23558a4825bdbc5e 924 SUPERFAMILY SSF63411 472 695 2.33E-52 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RY45_00935 71b3fb4b1ca6cfe02963bac95fbb6759 193 SUPERFAMILY SSF48150 3 186 9.42E-77 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RY45_00935 71b3fb4b1ca6cfe02963bac95fbb6759 193 Pfam PF03352 Methyladenine glycosylase 7 182 9.2E-77 T 14-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 RY45_00935 71b3fb4b1ca6cfe02963bac95fbb6759 193 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 182 2.2E-77 T 14-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 RY45_00935 71b3fb4b1ca6cfe02963bac95fbb6759 193 Gene3D G3DSA:1.10.340.30 3 188 4.9E-80 T 14-10-2018 RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 SMART SM00116 217 265 36.0 T 14-10-2018 IPR000644 CBS domain RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 SMART SM00116 282 330 0.025 T 14-10-2018 IPR000644 CBS domain RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 Gene3D G3DSA:3.40.50.10490 13 202 9.7E-67 T 14-10-2018 RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 Gene3D G3DSA:3.10.580.10 203 328 2.4E-43 T 14-10-2018 RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 Pfam PF00571 CBS domain 208 264 0.0024 T 14-10-2018 IPR000644 CBS domain RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 Pfam PF00571 CBS domain 276 328 9.0E-9 T 14-10-2018 IPR000644 CBS domain RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 52 320 3.5E-110 T 14-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 PIRSF PIRSF004692 2 331 3.4E-132 T 14-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 Pfam PF01380 SIS domain 47 179 1.9E-33 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_20540 7dc0a3570081e41c20cf768fdd583f94 331 SUPERFAMILY SSF53697 18 328 3.78E-69 T 14-10-2018 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 7.9E-49 T 14-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 413 2.8E-24 T 14-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 Gene3D G3DSA:3.30.460.30 1 156 1.6E-56 T 14-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 14-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 2.5E-49 T 14-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 SUPERFAMILY SSF69742 1 156 1.02E-46 T 14-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 PIRSF PIRSF000445 1 419 3.0E-153 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 415 8.9E-143 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 31.273 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 Gene3D G3DSA:3.40.50.720 159 311 4.7E-43 T 14-10-2018 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 SUPERFAMILY SSF69075 315 415 2.62E-28 T 14-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RY45_16250 c775a9abb4ae43ea4b0cf9557b7432a7 419 SUPERFAMILY SSF51735 160 313 4.28E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_04980 5bd3d4453b419f7c5a92886ed1e17374 364 Pfam PF06804 NlpB/DapX lipoprotein 38 352 1.9E-96 T 14-10-2018 IPR010653 NlpB/DapX lipoprotein RY45_04980 5bd3d4453b419f7c5a92886ed1e17374 364 Gene3D G3DSA:3.30.310.170 236 360 7.6E-28 T 14-10-2018 RY45_04980 5bd3d4453b419f7c5a92886ed1e17374 364 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 1 353 37.705 T 14-10-2018 IPR014524 Outer membrane protein assembly factor BamC RY45_17520 32be86beec09efd2cd3e35c3a2e64ff9 358 Gene3D G3DSA:1.10.10.10 1 98 4.7E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_17520 32be86beec09efd2cd3e35c3a2e64ff9 358 Pfam PF00891 O-methyltransferase 181 318 2.6E-15 T 14-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 RY45_17520 32be86beec09efd2cd3e35c3a2e64ff9 358 Gene3D G3DSA:3.40.50.150 166 349 2.6E-103 T 14-10-2018 RY45_17520 32be86beec09efd2cd3e35c3a2e64ff9 358 SUPERFAMILY SSF53335 100 347 5.52E-37 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_17520 32be86beec09efd2cd3e35c3a2e64ff9 358 Gene3D G3DSA:1.20.58.1390 101 314 2.6E-103 T 14-10-2018 RY45_09615 4745b134046b6840f49fbd966ef0c885 77 Gene3D G3DSA:2.10.290.10 2 72 3.8E-27 T 14-10-2018 IPR029037 YfgJ-like RY45_09615 4745b134046b6840f49fbd966ef0c885 77 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 4 72 8.0E-14 T 14-10-2018 IPR010807 Protein of unknown function DUF1407 RY45_09615 4745b134046b6840f49fbd966ef0c885 77 Pfam PF07191 zinc-ribbons 5 69 8.0E-26 T 14-10-2018 IPR010807 Protein of unknown function DUF1407 RY45_09615 4745b134046b6840f49fbd966ef0c885 77 SUPERFAMILY SSF161187 4 70 7.32E-26 T 14-10-2018 RY45_18580 83baed0cc6652146664d3dd0bc9ea7a9 288 PIRSF PIRSF016020 8 288 9.5E-59 T 14-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 RY45_18580 83baed0cc6652146664d3dd0bc9ea7a9 288 Gene3D G3DSA:2.70.98.10 2 288 2.1E-83 T 14-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RY45_18580 83baed0cc6652146664d3dd0bc9ea7a9 288 Pfam PF01263 Aldose 1-epimerase 22 286 5.6E-43 T 14-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 RY45_18580 83baed0cc6652146664d3dd0bc9ea7a9 288 SUPERFAMILY SSF74650 16 285 6.03E-63 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 Pfam PF00158 Sigma-54 interaction domain 376 543 5.1E-70 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 Pfam PF13185 GAF domain 290 342 4.8E-7 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 SUPERFAMILY SSF46689 651 700 6.27E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 SUPERFAMILY SSF55781 56 165 2.62E-6 T 14-10-2018 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 Gene3D G3DSA:3.40.50.300 368 546 3.9E-65 T 14-10-2018 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 SUPERFAMILY SSF52540 375 612 4.51E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 Gene3D G3DSA:1.10.10.60 657 700 6.1E-9 T 14-10-2018 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 SMART SM00065 201 352 7.4E-6 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 Gene3D G3DSA:3.30.450.40 18 173 1.7E-6 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 462 477 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 Gene3D G3DSA:3.30.450.40 187 353 1.6E-13 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 SUPERFAMILY SSF55781 204 351 1.53E-12 T 14-10-2018 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 Gene3D G3DSA:1.10.8.60 547 613 2.0E-24 T 14-10-2018 RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 SMART SM00382 396 540 4.5E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_12950 f7cb55704096d3fefbdb6a8aad8c3674 709 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 400 413 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RY45_01490 490bbd6bf3b34a673b4292f2816d257f 300 SUPERFAMILY SSF103481 45 143 2.22E-12 T 14-10-2018 RY45_01490 490bbd6bf3b34a673b4292f2816d257f 300 TIGRFAM TIGR00688 rarD: protein RarD 8 261 1.8E-88 T 14-10-2018 IPR004626 RarD protein GO:0005887 RY45_01490 490bbd6bf3b34a673b4292f2816d257f 300 Pfam PF00892 EamA-like transporter family 9 142 1.2E-15 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_01490 490bbd6bf3b34a673b4292f2816d257f 300 SUPERFAMILY SSF103481 189 288 2.09E-7 T 14-10-2018 RY45_21160 f79fea832a7657d8364a1e1ac61a1452 81 Pfam PF13670 Peptidase propeptide and YPEB domain 9 79 4.8E-9 T 14-10-2018 IPR025711 PepSY domain RY45_11500 5aa3f4f037104b5c62c4d5de4677829d 216 Pfam PF13972 Bacterial transcriptional repressor 62 201 4.5E-40 T 14-10-2018 IPR025722 Bacterial transcriptional repressor TetR RY45_11500 5aa3f4f037104b5c62c4d5de4677829d 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 5.0E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_11500 5aa3f4f037104b5c62c4d5de4677829d 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 5.0E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_11500 5aa3f4f037104b5c62c4d5de4677829d 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.8E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_11500 5aa3f4f037104b5c62c4d5de4677829d 216 Gene3D G3DSA:1.10.357.10 6 215 2.4E-59 T 14-10-2018 RY45_11500 5aa3f4f037104b5c62c4d5de4677829d 216 SUPERFAMILY SSF46689 5 79 2.36E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_21305 cf7544d0fbd2b4f3f71e651bb3f6182e 456 Pfam PF02666 Phosphatidylserine decarboxylase 231 427 5.2E-40 T 14-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 RY45_21305 cf7544d0fbd2b4f3f71e651bb3f6182e 456 Pfam PF12588 Phophatidylserine decarboxylase 45 193 8.5E-39 T 14-10-2018 IPR022237 L-tryptophan decarboxylase psiD-like KEGG: 00380+4.1.1.105|KEGG: 00901+4.1.1.105|MetaCyc: PWY-3181|MetaCyc: PWY-5290|MetaCyc: PWY-5473|MetaCyc: PWY-581|MetaCyc: PWY-5877|MetaCyc: PWY-6307|MetaCyc: PWY-6326|MetaCyc: PWY-7936 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 5.3E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 5.3E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 5.3E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12860 5d55ce627038f20ab85e41abb797606c 249 Gene3D G3DSA:3.40.50.720 1 248 6.0E-70 T 14-10-2018 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 160 183 8.8E-53 T 14-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 95 115 8.8E-53 T 14-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 14 31 8.8E-53 T 14-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 75 92 8.8E-53 T 14-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 225 244 8.8E-53 T 14-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 199 218 8.8E-53 T 14-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 10 247 6.0E-100 T 14-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 246 2.2E-50 T 14-10-2018 RY45_12860 5d55ce627038f20ab85e41abb797606c 249 SUPERFAMILY SSF51735 1 247 3.71E-68 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_12860 5d55ce627038f20ab85e41abb797606c 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 176 0.0025 T 14-10-2018 RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 194 3.0E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 210 3.0E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 210 222 3.0E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 SMART SM00421 177 234 3.2E-21 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 SUPERFAMILY SSF46894 168 240 1.39E-18 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 SUPERFAMILY SSF75516 6 168 1.96E-38 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 ProSitePatterns PS00622 LuxR-type HTH domain signature. 194 221 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 Pfam PF00196 Bacterial regulatory proteins, luxR family 179 234 1.3E-17 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 Pfam PF03472 Autoinducer binding domain 19 165 6.0E-36 T 14-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 Gene3D G3DSA:3.30.450.80 5 172 3.4E-41 T 14-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily RY45_06005 a1f16e8431e1fdc93db0bb14c29acfe5 256 Gene3D G3DSA:1.10.10.10 174 240 2.8E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_08930 510eb1b23ed99e91bc21999114654611 411 Gene3D G3DSA:1.20.1250.20 202 385 4.4E-16 T 14-10-2018 RY45_08930 510eb1b23ed99e91bc21999114654611 411 Gene3D G3DSA:1.20.1250.20 7 196 6.0E-9 T 14-10-2018 RY45_08930 510eb1b23ed99e91bc21999114654611 411 Pfam PF07690 Major Facilitator Superfamily 32 350 2.4E-19 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_08930 510eb1b23ed99e91bc21999114654611 411 SUPERFAMILY SSF103473 9 393 1.96E-40 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_20955 d44b5cf502a700facd18ccbfc8671248 447 Pfam PF00860 Permease family 25 407 7.0E-73 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RY45_12965 0bca432f953b1b869cb9982a382be75e 139 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 1 53 9.2E-16 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12965 0bca432f953b1b869cb9982a382be75e 139 SUPERFAMILY SSF53706 1 139 1.11E-48 T 14-10-2018 RY45_12965 0bca432f953b1b869cb9982a382be75e 139 Gene3D G3DSA:2.20.25.90 1 55 3.3E-19 T 14-10-2018 RY45_12965 0bca432f953b1b869cb9982a382be75e 139 Gene3D G3DSA:3.40.50.740 61 139 3.0E-30 T 14-10-2018 RY45_12965 0bca432f953b1b869cb9982a382be75e 139 SMART SM00926 1 54 2.6E-16 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12965 0bca432f953b1b869cb9982a382be75e 139 Pfam PF00384 Molybdopterin oxidoreductase 61 138 7.8E-16 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12965 0bca432f953b1b869cb9982a382be75e 139 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 6 24 - T 14-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 RY45_01960 10239ae19f7e331e2eb7f0aed8402d50 127 Gene3D G3DSA:3.90.1030.10 1 117 2.8E-48 T 14-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01960 10239ae19f7e331e2eb7f0aed8402d50 127 Pfam PF01196 Ribosomal protein L17 20 116 2.5E-35 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01960 10239ae19f7e331e2eb7f0aed8402d50 127 SUPERFAMILY SSF64263 1 119 3.01E-51 T 14-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01960 10239ae19f7e331e2eb7f0aed8402d50 127 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.772 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01960 10239ae19f7e331e2eb7f0aed8402d50 127 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 2.5E-51 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01960 10239ae19f7e331e2eb7f0aed8402d50 127 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03605 7dbed102c340507b2e8a2b3d0b8ff2b8 406 Pfam PF00271 Helicase conserved C-terminal domain 225 333 4.9E-24 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_03605 7dbed102c340507b2e8a2b3d0b8ff2b8 406 SMART SM00490 252 333 4.9E-27 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_03605 7dbed102c340507b2e8a2b3d0b8ff2b8 406 Gene3D G3DSA:3.40.50.300 1 204 8.4E-65 T 14-10-2018 RY45_03605 7dbed102c340507b2e8a2b3d0b8ff2b8 406 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 147 155 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_03605 7dbed102c340507b2e8a2b3d0b8ff2b8 406 Pfam PF00270 DEAD/DEAH box helicase 24 188 5.4E-44 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_03605 7dbed102c340507b2e8a2b3d0b8ff2b8 406 SUPERFAMILY SSF52540 68 353 5.21E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03605 7dbed102c340507b2e8a2b3d0b8ff2b8 406 Gene3D G3DSA:3.40.50.300 207 363 1.3E-42 T 14-10-2018 RY45_03605 7dbed102c340507b2e8a2b3d0b8ff2b8 406 SMART SM00487 19 216 2.1E-49 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_08520 626965d90dcb49ad12038726ce635449 244 SMART SM00479 8 185 1.6E-52 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_08520 626965d90dcb49ad12038726ce635449 244 SUPERFAMILY SSF53098 8 187 5.48E-56 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_08520 626965d90dcb49ad12038726ce635449 244 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 8 244 4.6E-95 T 14-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_08520 626965d90dcb49ad12038726ce635449 244 Gene3D G3DSA:3.30.420.10 4 192 8.1E-57 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_08520 626965d90dcb49ad12038726ce635449 244 Pfam PF00929 Exonuclease 10 176 1.6E-38 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RY45_08520 626965d90dcb49ad12038726ce635449 244 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 7 219 2.3E-79 T 14-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_02705 c4f78f34b0b8399bb595fd079ce1c462 236 Gene3D G3DSA:1.20.120.1600 24 110 2.4E-54 T 14-10-2018 RY45_02705 c4f78f34b0b8399bb595fd079ce1c462 236 SUPERFAMILY SSF56784 11 235 1.01E-38 T 14-10-2018 IPR036412 HAD-like superfamily RY45_02705 c4f78f34b0b8399bb595fd079ce1c462 236 Gene3D G3DSA:3.40.50.1000 12 228 2.4E-54 T 14-10-2018 IPR023214 HAD superfamily RY45_02705 c4f78f34b0b8399bb595fd079ce1c462 236 Pfam PF13419 Haloacid dehalogenase-like hydrolase 15 206 6.9E-13 T 14-10-2018 RY45_02705 c4f78f34b0b8399bb595fd079ce1c462 236 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 116 200 2.1E-8 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_00205 052ef5a417b3569f1917d82a53cf2509 360 SUPERFAMILY SSF53756 10 345 2.83E-88 T 14-10-2018 RY45_00205 052ef5a417b3569f1917d82a53cf2509 360 Gene3D G3DSA:3.40.50.2000 4 156 8.1E-26 T 14-10-2018 RY45_00205 052ef5a417b3569f1917d82a53cf2509 360 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 74 303 5.0E-55 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 RY45_00205 052ef5a417b3569f1917d82a53cf2509 360 Gene3D G3DSA:3.40.50.2000 162 348 4.0E-38 T 14-10-2018 RY45_15150 18bd742c1eb4ba3e9ad2689a72fe286c 80 Pfam PF11730 Protein of unknown function (DUF3297) 9 79 2.5E-37 T 14-10-2018 IPR021724 Protein of unknown function DUF3297 RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 Pfam PF17203 Single cache domain 3 35 160 8.6E-19 T 14-10-2018 IPR033463 Single cache domain 3 RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 SUPERFAMILY SSF55874 384 516 1.57E-20 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 Gene3D G3DSA:3.30.565.10 382 521 3.3E-18 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 SUPERFAMILY SSF103190 38 159 1.26E-25 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 SUPERFAMILY SSF55785 211 264 7.54E-5 T 14-10-2018 IPR035965 PAS domain superfamily RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 SUPERFAMILY SSF55890 312 362 2.75E-9 T 14-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 465 3.4E-5 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 498 3.4E-5 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 Gene3D G3DSA:3.30.450.20 206 297 1.8E-7 T 14-10-2018 RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 312 364 9.5E-11 T 14-10-2018 IPR039506 SpoOB, alpha-helical domain RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 Gene3D G3DSA:3.30.450.20 29 159 1.1E-29 T 14-10-2018 RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 412 516 4.2E-11 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_06635 9fd0aadacdab21ecdc3eecb23dcea66b 522 SMART SM00387 409 520 8.6E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_07860 f576fb5cde06645a2a90dd8dd211ba7e 522 Gene3D G3DSA:3.30.420.280 300 501 1.5E-13 T 14-10-2018 RY45_07860 f576fb5cde06645a2a90dd8dd211ba7e 522 Gene3D G3DSA:3.40.50.300 11 214 1.5E-25 T 14-10-2018 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 Pfam PF00551 Formyl transferase 23 173 1.0E-22 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 SUPERFAMILY SSF51735 319 653 6.02E-74 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 SUPERFAMILY SSF50486 205 302 9.26E-25 T 14-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 PIRSF PIRSF036506 1 661 0.0 T 14-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 662 67.412 T 14-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 Gene3D G3DSA:3.40.50.720 316 658 9.2E-125 T 14-10-2018 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 Pfam PF01370 NAD dependent epimerase/dehydratase family 320 568 2.0E-44 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 Pfam PF02911 Formyl transferase, C-terminal domain 202 294 4.9E-18 T 14-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 SUPERFAMILY SSF53328 1 202 4.71E-58 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_05455 f29b265a96ea60e86cc1412bf4df3595 663 Gene3D G3DSA:3.40.50.12230 1 304 2.3E-107 T 14-10-2018 RY45_02640 99005c203ab3cfe4f37904ac91e128ab 336 Gene3D G3DSA:3.30.540.10 7 320 2.4E-129 T 14-10-2018 RY45_02640 99005c203ab3cfe4f37904ac91e128ab 336 PIRSF PIRSF004532 1 332 1.5E-139 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RY45_02640 99005c203ab3cfe4f37904ac91e128ab 336 SUPERFAMILY SSF56655 2 325 8.55E-110 T 14-10-2018 RY45_02640 99005c203ab3cfe4f37904ac91e128ab 336 Gene3D G3DSA:3.40.190.90 110 277 2.4E-129 T 14-10-2018 RY45_02640 99005c203ab3cfe4f37904ac91e128ab 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 329 2.5E-172 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RY45_02640 99005c203ab3cfe4f37904ac91e128ab 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 9.5E-133 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RY45_04940 e6d554130789a921fef4d3eba1cf1e91 164 Pfam PF13710 ACT domain 12 73 7.4E-16 T 14-10-2018 RY45_04940 e6d554130789a921fef4d3eba1cf1e91 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 4.0E-32 T 14-10-2018 RY45_04940 e6d554130789a921fef4d3eba1cf1e91 164 SUPERFAMILY SSF55021 79 162 1.33E-24 T 14-10-2018 RY45_04940 e6d554130789a921fef4d3eba1cf1e91 164 SUPERFAMILY SSF55021 2 76 1.04E-23 T 14-10-2018 RY45_04940 e6d554130789a921fef4d3eba1cf1e91 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 1.5E-64 T 14-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RY45_04940 e6d554130789a921fef4d3eba1cf1e91 164 Gene3D G3DSA:3.30.70.260 1 78 7.3E-36 T 14-10-2018 RY45_04940 e6d554130789a921fef4d3eba1cf1e91 164 Gene3D G3DSA:3.30.70.1150 80 157 5.6E-25 T 14-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal RY45_04940 e6d554130789a921fef4d3eba1cf1e91 164 Pfam PF10369 Small subunit of acetolactate synthase 84 157 3.7E-23 T 14-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RY45_08260 323028b699520ad240690c8ffd136ae4 325 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 7 321 1.1E-149 T 14-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 RY45_08260 323028b699520ad240690c8ffd136ae4 325 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 55.309 T 14-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 RY45_08260 323028b699520ad240690c8ffd136ae4 325 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 3.9E-161 T 14-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like RY45_08260 323028b699520ad240690c8ffd136ae4 325 SUPERFAMILY SSF53335 91 322 5.48E-34 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_08260 323028b699520ad240690c8ffd136ae4 325 Gene3D G3DSA:3.40.50.150 101 294 3.9E-22 T 14-10-2018 RY45_10165 77c85d49b89d531150bf234f024e229a 554 ProSitePatterns PS00455 Putative AMP-binding domain signature. 174 185 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_10165 77c85d49b89d531150bf234f024e229a 554 Gene3D G3DSA:3.40.50.12780 8 427 2.1E-84 T 14-10-2018 RY45_10165 77c85d49b89d531150bf234f024e229a 554 Gene3D G3DSA:3.30.300.30 428 542 1.6E-6 T 14-10-2018 RY45_10165 77c85d49b89d531150bf234f024e229a 554 Pfam PF00501 AMP-binding enzyme 20 432 5.0E-86 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_10165 77c85d49b89d531150bf234f024e229a 554 SUPERFAMILY SSF56801 12 542 1.83E-116 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 2.4E-5 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 2.4E-5 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 SUPERFAMILY SSF52317 1 191 5.68E-55 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 Gene3D G3DSA:3.40.50.880 1 192 7.2E-61 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 1.7E-87 T 14-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00097 Anthranilate synthase component II signature 99 107 6.4E-36 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00097 Anthranilate synthase component II signature 169 182 6.4E-36 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00097 Anthranilate synthase component II signature 2 16 6.4E-36 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00097 Anthranilate synthase component II signature 119 131 6.4E-36 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00097 Anthranilate synthase component II signature 47 56 6.4E-36 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00097 Anthranilate synthase component II signature 74 85 6.4E-36 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 Pfam PF00117 Glutamine amidotransferase class-I 3 190 6.3E-53 T 14-10-2018 IPR017926 Glutamine amidotransferase RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 1.2E-13 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.2E-13 T 14-10-2018 RY45_16410 0227d3b0b3c52ba5d140f8d4b13eb29d 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 1.2E-13 T 14-10-2018 RY45_10545 3653e95f52983403d2a467fcb4962d04 318 Gene3D G3DSA:1.20.1630.10 3 227 8.9E-16 T 14-10-2018 RY45_10545 3653e95f52983403d2a467fcb4962d04 318 Pfam PF03916 Polysulphide reductase, NrfD 6 317 1.3E-88 T 14-10-2018 IPR005614 NrfD family RY45_10545 3653e95f52983403d2a467fcb4962d04 318 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 6 318 5.9E-138 T 14-10-2018 IPR017566 NrfD RY45_10365 709e1622d3879100f34aa765fdb31472 468 SUPERFAMILY SSF51905 29 410 1.61E-37 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10365 709e1622d3879100f34aa765fdb31472 468 TIGRFAM TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase 5 468 1.0E-247 T 14-10-2018 IPR017715 Putative aminophosphonate oxidoreductase RY45_10365 709e1622d3879100f34aa765fdb31472 468 Gene3D G3DSA:3.50.50.60 30 395 1.8E-64 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10365 709e1622d3879100f34aa765fdb31472 468 Gene3D G3DSA:3.30.9.10 124 354 1.8E-64 T 14-10-2018 RY45_10365 709e1622d3879100f34aa765fdb31472 468 Pfam PF01266 FAD dependent oxidoreductase 30 394 1.0E-51 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RY45_18105 b2402df673a18d9b9402dbb6dac3f964 240 SUPERFAMILY SSF48317 40 207 8.37E-20 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RY45_18105 b2402df673a18d9b9402dbb6dac3f964 240 SMART SM00014 85 205 1.3E-7 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_18105 b2402df673a18d9b9402dbb6dac3f964 240 Pfam PF01569 PAP2 superfamily 88 195 4.3E-9 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RY45_01790 6c28d561516538e3e8d91c59e130c161 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 37 52 1.3E-11 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_01790 6c28d561516538e3e8d91c59e130c161 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 1.3E-11 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_01790 6c28d561516538e3e8d91c59e130c161 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 199 213 1.3E-11 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_01790 6c28d561516538e3e8d91c59e130c161 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 78 91 1.3E-11 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_01790 6c28d561516538e3e8d91c59e130c161 254 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 3 254 45.149 T 14-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 RY45_01790 6c28d561516538e3e8d91c59e130c161 254 Pfam PF00561 alpha/beta hydrolase fold 14 242 1.0E-25 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_01790 6c28d561516538e3e8d91c59e130c161 254 SUPERFAMILY SSF53474 3 253 9.19E-57 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_01790 6c28d561516538e3e8d91c59e130c161 254 Gene3D G3DSA:3.40.50.1820 2 253 1.8E-70 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_01790 6c28d561516538e3e8d91c59e130c161 254 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 9 253 9.4E-93 T 14-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 RY45_17540 1f3778996ba98e682f1a17ce5bcd2621 241 SUPERFAMILY SSF51069 21 240 2.88E-74 T 14-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily RY45_17540 1f3778996ba98e682f1a17ce5bcd2621 241 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 111 127 - T 14-10-2018 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117|Reactome: R-HSA-1475029 RY45_17540 1f3778996ba98e682f1a17ce5bcd2621 241 Gene3D G3DSA:3.10.200.10 19 241 4.3E-78 T 14-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily RY45_17540 1f3778996ba98e682f1a17ce5bcd2621 241 SMART SM01057 23 240 1.6E-98 T 14-10-2018 IPR001148 Alpha carbonic anhydrase domain RY45_17540 1f3778996ba98e682f1a17ce5bcd2621 241 Pfam PF00194 Eukaryotic-type carbonic anhydrase 22 240 2.7E-50 T 14-10-2018 IPR001148 Alpha carbonic anhydrase domain RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 216 372 1.9E-35 T 14-10-2018 IPR000160 GGDEF domain RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 SMART SM00052 386 626 8.3E-96 T 14-10-2018 IPR001633 EAL domain RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 SUPERFAMILY SSF55073 223 378 1.73E-41 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 Pfam PF00990 Diguanylate cyclase, GGDEF domain 218 370 7.6E-39 T 14-10-2018 IPR000160 GGDEF domain RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 SUPERFAMILY SSF141868 393 629 5.62E-80 T 14-10-2018 IPR035919 EAL domain superfamily RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 Gene3D G3DSA:3.30.70.270 213 387 4.5E-52 T 14-10-2018 RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 Pfam PF00563 EAL domain 394 621 4.6E-66 T 14-10-2018 IPR001633 EAL domain RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 Gene3D G3DSA:3.20.20.450 388 633 2.0E-87 T 14-10-2018 IPR035919 EAL domain superfamily RY45_09795 98fa4dacbfba35d1ffd27921af452882 645 SMART SM00267 205 376 8.7E-53 T 14-10-2018 IPR000160 GGDEF domain RY45_20400 5a2bfbb957a9e0bbf24105204f6db599 209 Gene3D G3DSA:3.40.30.10 11 200 1.1E-79 T 14-10-2018 RY45_20400 5a2bfbb957a9e0bbf24105204f6db599 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 192 5.8E-9 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal RY45_20400 5a2bfbb957a9e0bbf24105204f6db599 209 SUPERFAMILY SSF47616 82 206 1.14E-22 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_20400 5a2bfbb957a9e0bbf24105204f6db599 209 Pfam PF13417 Glutathione S-transferase, N-terminal domain 21 87 7.5E-15 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_20400 5a2bfbb957a9e0bbf24105204f6db599 209 SUPERFAMILY SSF52833 8 86 1.84E-21 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_20400 5a2bfbb957a9e0bbf24105204f6db599 209 Gene3D G3DSA:1.20.1050.10 89 191 1.1E-79 T 14-10-2018 RY45_13035 16bc1fccea6343d18ee1650e5341292b 83 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 79 1.5E-25 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RY45_13035 16bc1fccea6343d18ee1650e5341292b 83 SUPERFAMILY SSF159127 1 80 9.55E-25 T 14-10-2018 IPR037254 HupF/HypC superfamily RY45_13035 16bc1fccea6343d18ee1650e5341292b 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 59 71 1.1E-15 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RY45_13035 16bc1fccea6343d18ee1650e5341292b 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.1E-15 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RY45_13035 16bc1fccea6343d18ee1650e5341292b 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 41 57 1.1E-15 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RY45_13035 16bc1fccea6343d18ee1650e5341292b 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 19 35 1.1E-15 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RY45_13035 16bc1fccea6343d18ee1650e5341292b 83 Gene3D G3DSA:2.40.50.970 1 80 6.8E-29 T 14-10-2018 IPR037254 HupF/HypC superfamily RY45_13035 16bc1fccea6343d18ee1650e5341292b 83 Pfam PF01455 HupF/HypC family 1 67 1.1E-23 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RY45_17975 80cd3aaccfeddfa6b5d23d8cc2a3669e 98 SUPERFAMILY SSF54909 1 98 9.12E-30 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_17975 80cd3aaccfeddfa6b5d23d8cc2a3669e 98 Pfam PF03795 YCII-related domain 1 95 7.5E-27 T 14-10-2018 IPR005545 YCII-related RY45_17975 80cd3aaccfeddfa6b5d23d8cc2a3669e 98 Gene3D G3DSA:3.30.70.1060 1 98 3.8E-36 T 14-10-2018 RY45_02595 049c4f8b1a31ee0fbd1a47269dc27ebf 101 Gene3D G3DSA:3.30.70.100 1 101 2.2E-34 T 14-10-2018 RY45_02595 049c4f8b1a31ee0fbd1a47269dc27ebf 101 SUPERFAMILY SSF54909 4 97 1.61E-25 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_02595 049c4f8b1a31ee0fbd1a47269dc27ebf 101 Pfam PF08803 Putative mono-oxygenase ydhR 4 99 8.1E-35 T 14-10-2018 IPR014910 Putative monooxygenase YdhR RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 SUPERFAMILY SSF46955 1 126 1.06E-38 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 Gene3D G3DSA:1.10.1660.10 1 125 3.7E-36 T 14-10-2018 RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 2.0E-51 T 14-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 8.6E-11 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 8.6E-11 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 8.6E-11 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 Pfam PF00376 MerR family regulatory protein 2 39 7.6E-17 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 Pfam PF09278 MerR, DNA binding 44 108 6.0E-18 T 14-10-2018 IPR015358 Transcription regulator MerR, DNA binding RY45_21915 0ed62e1839de0ec71ef0ae3cf67f2960 129 SMART SM00422 1 70 8.8E-32 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_18920 aca3c9df794ec23dcd6d79a4eb7e5bf3 478 TIGRFAM TIGR00836 amt: ammonium transporter 48 476 9.1E-126 T 14-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RY45_18920 aca3c9df794ec23dcd6d79a4eb7e5bf3 478 Pfam PF00909 Ammonium Transporter Family 51 476 9.7E-113 T 14-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RY45_18920 aca3c9df794ec23dcd6d79a4eb7e5bf3 478 ProSitePatterns PS01219 Ammonium transporters signature. 224 249 - T 14-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RY45_18920 aca3c9df794ec23dcd6d79a4eb7e5bf3 478 Gene3D G3DSA:1.10.3430.10 24 478 7.0E-130 T 14-10-2018 IPR029020 Ammonium/urea transporter RY45_18920 aca3c9df794ec23dcd6d79a4eb7e5bf3 478 SUPERFAMILY SSF111352 44 457 1.7E-117 T 14-10-2018 RY45_21450 7ed0f02180a262341312c51ff0ea0e82 177 PIRSF PIRSF039093 1 175 3.2E-86 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RY45_21450 7ed0f02180a262341312c51ff0ea0e82 177 Pfam PF00227 Proteasome subunit 2 171 5.8E-24 T 14-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 RY45_21450 7ed0f02180a262341312c51ff0ea0e82 177 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 40.548 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RY45_21450 7ed0f02180a262341312c51ff0ea0e82 177 Gene3D G3DSA:3.60.20.10 1 173 2.8E-66 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_21450 7ed0f02180a262341312c51ff0ea0e82 177 SUPERFAMILY SSF56235 2 172 7.73E-58 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_21450 7ed0f02180a262341312c51ff0ea0e82 177 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 171 2.0E-84 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RY45_19375 3b6b8de0016cbb24d0c5c6558fac3d36 246 SUPERFAMILY SSF52833 75 239 1.03E-37 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_19375 3b6b8de0016cbb24d0c5c6558fac3d36 246 ProSitePatterns PS00194 Thioredoxin family active site. 98 116 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RY45_19375 3b6b8de0016cbb24d0c5c6558fac3d36 246 Pfam PF13462 Thioredoxin 83 239 1.4E-20 T 14-10-2018 IPR012336 Thioredoxin-like fold RY45_19375 3b6b8de0016cbb24d0c5c6558fac3d36 246 Gene3D G3DSA:3.40.30.10 76 245 7.7E-43 T 14-10-2018 RY45_14595 96bff69f539ff9003bb7a31389c6390e 739 Gene3D G3DSA:3.60.15.10 481 702 2.7E-41 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_14595 96bff69f539ff9003bb7a31389c6390e 739 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 117 694 2.4E-110 T 14-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 RY45_14595 96bff69f539ff9003bb7a31389c6390e 739 Pfam PF03772 Competence protein 207 456 1.5E-58 T 14-10-2018 IPR004477 ComEC/Rec2-related protein RY45_14595 96bff69f539ff9003bb7a31389c6390e 739 Pfam PF00753 Metallo-beta-lactamase superfamily 488 561 6.8E-5 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_14595 96bff69f539ff9003bb7a31389c6390e 739 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 229 390 2.7E-27 T 14-10-2018 IPR004477 ComEC/Rec2-related protein RY45_14595 96bff69f539ff9003bb7a31389c6390e 739 SMART SM00849 491 674 4.5E-6 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_14595 96bff69f539ff9003bb7a31389c6390e 739 SUPERFAMILY SSF56281 479 701 5.11E-36 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_14595 96bff69f539ff9003bb7a31389c6390e 739 Pfam PF13567 Domain of unknown function (DUF4131) 25 175 2.7E-8 T 14-10-2018 IPR025405 Domain of unknown function DUF4131 RY45_02545 cb8716789f75fb531c9d0dddf64ec0dd 180 Gene3D G3DSA:3.40.630.30 4 178 4.3E-38 T 14-10-2018 RY45_02545 cb8716789f75fb531c9d0dddf64ec0dd 180 SUPERFAMILY SSF55729 2 177 7.65E-37 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_02545 cb8716789f75fb531c9d0dddf64ec0dd 180 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 7.9E-19 T 14-10-2018 IPR000182 GNAT domain RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 SMART SM00342 184 267 1.3E-30 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 267 9.5E-8 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 251 9.5E-8 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 263 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 Gene3D G3DSA:1.10.10.60 163 271 5.8E-28 T 14-10-2018 RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 Pfam PF12833 Helix-turn-helix domain 191 267 1.2E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 SUPERFAMILY SSF46689 167 217 2.26E-5 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 SUPERFAMILY SSF51215 27 147 5.75E-5 T 14-10-2018 IPR037923 Transcription regulator HTH-like RY45_13915 53d577afa3d5e6f8327963f40a613a14 271 SUPERFAMILY SSF46689 220 268 1.15E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_08645 5d300aaecc66385d6f6037f05bb8f731 140 SUPERFAMILY SSF56349 91 131 3.83E-11 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_08645 5d300aaecc66385d6f6037f05bb8f731 140 Gene3D G3DSA:1.10.443.10 22 137 2.5E-9 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_08645 5d300aaecc66385d6f6037f05bb8f731 140 Pfam PF01527 Transposase 5 76 6.3E-12 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RY45_08645 5d300aaecc66385d6f6037f05bb8f731 140 SUPERFAMILY SSF46689 5 94 5.38E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_17545 3f056d4443ecf92fd17934eb8d55d544 302 SUPERFAMILY SSF110581 4 301 1.31E-116 T 14-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RY45_17545 3f056d4443ecf92fd17934eb8d55d544 302 Gene3D G3DSA:3.40.1790.10 2 302 4.1E-140 T 14-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RY45_17545 3f056d4443ecf92fd17934eb8d55d544 302 Pfam PF04227 Indigoidine synthase A like protein 12 300 1.8E-135 T 14-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RY45_17545 3f056d4443ecf92fd17934eb8d55d544 302 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 10 302 43.414 T 14-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 Gene3D G3DSA:1.10.10.10 1 91 2.3E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 Pfam PF03466 LysR substrate binding domain 97 298 2.5E-21 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 Gene3D G3DSA:3.40.190.10 175 272 1.5E-42 T 14-10-2018 RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 Gene3D G3DSA:3.40.190.10 92 291 1.5E-42 T 14-10-2018 RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 SUPERFAMILY SSF53850 92 299 5.97E-32 T 14-10-2018 RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 SUPERFAMILY SSF46785 5 88 8.5E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 5.4E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 1.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 1.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_00235 072608a37f8505a1f5f5a38d1850a73f 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 1.1E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 SMART SM00840 340 401 5.8E-30 T 14-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 SUPERFAMILY SSF52374 1 313 1.31E-102 T 14-10-2018 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 SUPERFAMILY SSF47323 316 457 2.48E-38 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 457 39.164 T 14-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 457 4.3E-187 T 14-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 Gene3D G3DSA:3.40.50.620 1 305 9.6E-136 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 1.4E-136 T 14-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 Pfam PF09190 DALR domain 340 401 2.5E-25 T 14-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 Gene3D G3DSA:1.20.120.640 306 458 1.1E-47 T 14-10-2018 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 2.4E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 2.4E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 2.4E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RY45_14480 3b943bf205cb0d332b469699e5ec97f3 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 2.4E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RY45_07100 6802728992cb8eb173008259f94ec5c3 405 Pfam PF12704 MacB-like periplasmic core domain 26 201 2.4E-6 T 14-10-2018 IPR025857 MacB-like periplasmic core domain RY45_07100 6802728992cb8eb173008259f94ec5c3 405 Pfam PF02687 FtsX-like permease family 303 398 8.1E-7 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RY45_12715 3e2df29cc1dc505a579e176bbecf21ce 90 Gene3D G3DSA:3.10.450.10 6 89 2.3E-5 T 14-10-2018 RY45_12715 3e2df29cc1dc505a579e176bbecf21ce 90 SUPERFAMILY SSF54403 7 85 6.8E-10 T 14-10-2018 RY45_19160 2bf9a4808bad5c789fb0002b92e17e62 151 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 135 2.2E-38 T 14-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RY45_19160 2bf9a4808bad5c789fb0002b92e17e62 151 SUPERFAMILY SSF102400 1 140 4.18E-38 T 14-10-2018 IPR036768 DNA polymerase III subunit chi superfamily RY45_19160 2bf9a4808bad5c789fb0002b92e17e62 151 Gene3D G3DSA:3.40.50.10110 1 139 6.5E-46 T 14-10-2018 IPR036768 DNA polymerase III subunit chi superfamily RY45_00695 69079112dbfe21eb849512ff690bad97 202 Pfam PF02036 SCP-2 sterol transfer family 15 111 7.5E-18 T 14-10-2018 IPR003033 SCP2 sterol-binding domain RY45_00695 69079112dbfe21eb849512ff690bad97 202 SUPERFAMILY SSF55718 13 118 5.89E-5 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RY45_09880 018810f9e5a8ced1ac6a5ac4c0e0ebc5 223 Pfam PF13394 4Fe-4S single cluster domain 24 133 2.1E-14 T 14-10-2018 RY45_09880 018810f9e5a8ced1ac6a5ac4c0e0ebc5 223 PIRSF PIRSF000370 1 223 3.1E-68 T 14-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 RY45_09880 018810f9e5a8ced1ac6a5ac4c0e0ebc5 223 Pfam PF04055 Radical SAM superfamily 26 123 4.1E-12 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_09880 018810f9e5a8ced1ac6a5ac4c0e0ebc5 223 SUPERFAMILY SSF102114 24 119 4.71E-8 T 14-10-2018 RY45_09880 018810f9e5a8ced1ac6a5ac4c0e0ebc5 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 35.265 T 14-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 RY45_09880 018810f9e5a8ced1ac6a5ac4c0e0ebc5 223 Gene3D G3DSA:3.20.20.70 2 223 7.3E-54 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_09880 018810f9e5a8ced1ac6a5ac4c0e0ebc5 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 3.0E-109 T 14-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 3.0E-29 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 Gene3D G3DSA:2.30.33.40 1 97 4.2E-35 T 14-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 SMART SM00883 2 95 3.1E-48 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 14-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 24.136 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 PRINTS PR00297 10kDa chaperonin signature 25 46 1.3E-28 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 PRINTS PR00297 10kDa chaperonin signature 3 18 1.3E-28 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 PRINTS PR00297 10kDa chaperonin signature 82 95 1.3E-28 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 PRINTS PR00297 10kDa chaperonin signature 60 72 1.3E-28 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RY45_04800 c8cae0299168a2619a50f9e4d8754310 97 SUPERFAMILY SSF50129 1 96 2.59E-30 T 14-10-2018 IPR011032 GroES-like superfamily RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.0E-18 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.0E-18 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.0E-18 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.0E-18 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 1.9E-37 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.004 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 14-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 Gene3D G3DSA:4.10.640.10 1 75 2.8E-28 T 14-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 72 3.0E-22 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 Pfam PF01084 Ribosomal protein S18 18 68 1.4E-25 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04020 37f9d409b9714dee64b145f41be08c7d 76 SUPERFAMILY SSF46911 3 72 9.81E-29 T 14-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_18720 b7c7c3c27117bdfb9cb875ba582e0c17 142 Pfam PF10952 Protein of unknown function (DUF2753) 6 142 1.5E-64 T 14-10-2018 IPR020206 Uncharacterised protein family, VP2110 RY45_18720 b7c7c3c27117bdfb9cb875ba582e0c17 142 ProDom PD087558 YRN2_VIBPA ORF2 VV1184 VV13101 MOTY 3'REGION VC1009 VP2110 4 141 2.0E-30 T 14-10-2018 IPR020206 Uncharacterised protein family, VP2110 RY45_21015 d7d1d013333691827e6c527f3f8031b0 92 Gene3D G3DSA:3.40.1260.10 1 91 8.0E-17 T 14-10-2018 IPR027396 DsrEFH-like RY45_21015 d7d1d013333691827e6c527f3f8031b0 92 SUPERFAMILY SSF75169 1 90 2.5E-18 T 14-10-2018 IPR027396 DsrEFH-like RY45_21015 d7d1d013333691827e6c527f3f8031b0 92 Pfam PF04077 DsrH like protein 7 84 5.1E-17 T 14-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 RY45_21015 d7d1d013333691827e6c527f3f8031b0 92 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 3 90 9.7E-21 T 14-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 RY45_14380 1ed6ebf704007588a1bfc406707e8600 249 SUPERFAMILY SSF52540 14 219 8.59E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14380 1ed6ebf704007588a1bfc406707e8600 249 SMART SM00382 22 211 9.6E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_14380 1ed6ebf704007588a1bfc406707e8600 249 Pfam PF00005 ABC transporter 16 162 2.0E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_14380 1ed6ebf704007588a1bfc406707e8600 249 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_14380 1ed6ebf704007588a1bfc406707e8600 249 Gene3D G3DSA:3.40.50.300 7 246 2.2E-58 T 14-10-2018 RY45_04870 deec880a69cfb4ff64ac0cbeb8b629e7 456 SUPERFAMILY SSF52540 245 434 7.43E-33 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04870 deec880a69cfb4ff64ac0cbeb8b629e7 456 Pfam PF02562 PhoH-like protein 246 450 7.0E-52 T 14-10-2018 IPR003714 PhoH-like protein GO:0005524 RY45_04870 deec880a69cfb4ff64ac0cbeb8b629e7 456 Gene3D G3DSA:3.40.50.300 244 454 3.6E-64 T 14-10-2018 RY45_04870 deec880a69cfb4ff64ac0cbeb8b629e7 456 SMART SM00670 7 139 5.3E-10 T 14-10-2018 IPR002716 PIN domain RY45_04870 deec880a69cfb4ff64ac0cbeb8b629e7 456 Pfam PF13638 PIN domain 9 148 1.4E-36 T 14-10-2018 IPR002716 PIN domain RY45_04870 deec880a69cfb4ff64ac0cbeb8b629e7 456 Gene3D G3DSA:3.40.50.1010 3 154 3.5E-29 T 14-10-2018 RY45_04870 deec880a69cfb4ff64ac0cbeb8b629e7 456 SUPERFAMILY SSF88723 7 159 7.36E-15 T 14-10-2018 IPR029060 PIN-like domain superfamily RY45_03080 6988ee81c7adb95745b25c5281891b22 309 SMART SM00922 107 201 4.3E-8 T 14-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RY45_03080 6988ee81c7adb95745b25c5281891b22 309 Gene3D G3DSA:3.30.390.10 4 290 7.0E-84 T 14-10-2018 IPR029017 Enolase-like, N-terminal RY45_03080 6988ee81c7adb95745b25c5281891b22 309 SUPERFAMILY SSF54826 1 87 5.74E-20 T 14-10-2018 RY45_03080 6988ee81c7adb95745b25c5281891b22 309 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 153 184 - T 14-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RY45_03080 6988ee81c7adb95745b25c5281891b22 309 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 3 306 22.393 T 14-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 RY45_03080 6988ee81c7adb95745b25c5281891b22 309 Pfam PF13378 Enolase C-terminal domain-like 124 269 2.2E-16 T 14-10-2018 IPR029065 Enolase C-terminal domain-like RY45_03080 6988ee81c7adb95745b25c5281891b22 309 Gene3D G3DSA:3.20.20.120 92 286 7.0E-84 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RY45_03080 6988ee81c7adb95745b25c5281891b22 309 SUPERFAMILY SSF51604 96 291 2.23E-42 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RY45_03080 6988ee81c7adb95745b25c5281891b22 309 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 6 290 7.4E-62 T 14-10-2018 RY45_11885 1e8466f92ce4b044afc915453e05111c 369 SUPERFAMILY SSF52172 6 152 2.99E-38 T 14-10-2018 IPR011006 CheY-like superfamily RY45_11885 1e8466f92ce4b044afc915453e05111c 369 Pfam PF00072 Response regulator receiver domain 9 120 1.6E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11885 1e8466f92ce4b044afc915453e05111c 369 SMART SM00471 169 320 4.3E-9 T 14-10-2018 IPR003607 HD/PDEase domain RY45_11885 1e8466f92ce4b044afc915453e05111c 369 SUPERFAMILY SSF109604 155 351 5.65E-32 T 14-10-2018 RY45_11885 1e8466f92ce4b044afc915453e05111c 369 Gene3D G3DSA:1.10.3210.10 147 364 1.0E-75 T 14-10-2018 RY45_11885 1e8466f92ce4b044afc915453e05111c 369 Gene3D G3DSA:3.40.50.2300 2 141 3.2E-37 T 14-10-2018 RY45_11885 1e8466f92ce4b044afc915453e05111c 369 Pfam PF13487 HD domain 233 302 6.2E-18 T 14-10-2018 RY45_11885 1e8466f92ce4b044afc915453e05111c 369 SMART SM00448 7 120 2.8E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 217 229 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 44 240 4.9E-77 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 Pfam PF00813 FliP family 45 236 4.4E-76 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 169 184 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 100 112 6.3E-16 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 140 152 6.3E-16 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 230 240 6.3E-16 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 112 126 6.3E-16 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 162 174 6.3E-16 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 40 49 6.3E-16 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 42 61 1.2E-64 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 81 100 1.2E-64 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 214 239 1.2E-64 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 169 189 1.2E-64 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 61 81 1.2E-64 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_20355 0bad66bc42c11edd6bf4812844288ceb 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 190 211 1.2E-64 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_05940 6c6fb8d284e32c64b28d233100c0f56d 341 SUPERFAMILY SSF51735 1 335 1.36E-96 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_05940 6c6fb8d284e32c64b28d233100c0f56d 341 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 334 4.1E-142 T 14-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 RY45_05940 6c6fb8d284e32c64b28d233100c0f56d 341 Gene3D G3DSA:3.40.50.720 3 273 7.3E-141 T 14-10-2018 RY45_05940 6c6fb8d284e32c64b28d233100c0f56d 341 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 322 5.2E-59 T 14-10-2018 IPR016040 NAD(P)-binding domain RY45_05940 6c6fb8d284e32c64b28d233100c0f56d 341 Gene3D G3DSA:3.90.25.10 193 328 7.3E-141 T 14-10-2018 RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 Pfam PF13522 Glutamine amidotransferase domain 63 182 4.3E-23 T 14-10-2018 RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 SUPERFAMILY SSF53697 245 610 1.25E-111 T 14-10-2018 RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.584 T 14-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 Gene3D G3DSA:3.40.50.10490 448 595 3.0E-147 T 14-10-2018 RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 Gene3D G3DSA:3.60.20.10 2 241 5.8E-82 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 Pfam PF01380 SIS domain 463 592 6.0E-26 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 Pfam PF01380 SIS domain 292 418 1.5E-33 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 SUPERFAMILY SSF56235 2 232 5.4E-76 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 7.3E-261 T 14-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RY45_22085 e8a36e42167242cf4ff82e985e7630cd 610 Gene3D G3DSA:3.40.50.10490 249 609 3.0E-147 T 14-10-2018 RY45_02670 495558497b32435a21e5ff411ccc9f50 844 Pfam PF01295 Adenylate cyclase, class-I 227 824 3.0E-259 T 14-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 RY45_02670 495558497b32435a21e5ff411ccc9f50 844 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 600 614 - T 14-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 RY45_02670 495558497b32435a21e5ff411ccc9f50 844 PIRSF PIRSF001444 1 837 0.0 T 14-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 RY45_02670 495558497b32435a21e5ff411ccc9f50 844 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 241 252 - T 14-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 RY45_02670 495558497b32435a21e5ff411ccc9f50 844 Pfam PF12633 Adenylate cyclase NT domain 5 200 2.1E-76 T 14-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 RY45_06840 289c34e25722d452841cc58e58f751c2 285 SMART SM00342 188 271 1.4E-27 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_06840 289c34e25722d452841cc58e58f751c2 285 Gene3D G3DSA:1.10.10.60 173 276 1.7E-25 T 14-10-2018 RY45_06840 289c34e25722d452841cc58e58f751c2 285 SUPERFAMILY SSF46689 224 272 1.39E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_06840 289c34e25722d452841cc58e58f751c2 285 Pfam PF12833 Helix-turn-helix domain 194 272 5.3E-21 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_06840 289c34e25722d452841cc58e58f751c2 285 SUPERFAMILY SSF51215 27 158 5.23E-5 T 14-10-2018 IPR037923 Transcription regulator HTH-like RY45_07230 223a5930542212af3242d8e1bd25b30e 356 PRINTS PR00955 Flagellar motor switch protein FliM signature 87 103 2.7E-19 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RY45_07230 223a5930542212af3242d8e1bd25b30e 356 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 2.7E-19 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RY45_07230 223a5930542212af3242d8e1bd25b30e 356 PRINTS PR00955 Flagellar motor switch protein FliM signature 112 131 2.7E-19 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RY45_07230 223a5930542212af3242d8e1bd25b30e 356 PRINTS PR00955 Flagellar motor switch protein FliM signature 210 228 2.7E-19 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RY45_07230 223a5930542212af3242d8e1bd25b30e 356 PIRSF PIRSF002888 1 328 4.0E-96 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RY45_07230 223a5930542212af3242d8e1bd25b30e 356 Gene3D G3DSA:3.40.1550.10 42 229 1.1E-53 T 14-10-2018 IPR028976 CheC-like superfamily RY45_07230 223a5930542212af3242d8e1bd25b30e 356 SUPERFAMILY SSF101801 246 323 5.89E-17 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_07230 223a5930542212af3242d8e1bd25b30e 356 Pfam PF02154 Flagellar motor switch protein FliM 36 228 4.0E-79 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RY45_07230 223a5930542212af3242d8e1bd25b30e 356 SUPERFAMILY SSF103039 4 229 4.71E-19 T 14-10-2018 IPR028976 CheC-like superfamily RY45_07230 223a5930542212af3242d8e1bd25b30e 356 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 249 318 3.8E-20 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) RY45_07230 223a5930542212af3242d8e1bd25b30e 356 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 318 2.5E-115 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RY45_07230 223a5930542212af3242d8e1bd25b30e 356 Gene3D G3DSA:2.30.330.10 239 327 1.9E-6 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_02795 81262f3250e9447e34f671fd6b399837 655 Pfam PF00593 TonB dependent receptor 194 648 3.1E-38 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_02795 81262f3250e9447e34f671fd6b399837 655 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 143 1.2E-7 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_02795 81262f3250e9447e34f671fd6b399837 655 SUPERFAMILY SSF56935 33 649 1.43E-87 T 14-10-2018 RY45_02795 81262f3250e9447e34f671fd6b399837 655 Gene3D G3DSA:2.40.170.20 158 649 2.4E-66 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_02795 81262f3250e9447e34f671fd6b399837 655 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 47 649 5.2E-169 T 14-10-2018 IPR010100 TonB-dependent copper receptor RY45_02795 81262f3250e9447e34f671fd6b399837 655 Gene3D G3DSA:2.170.130.10 57 151 1.6E-8 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 60 2.6E-16 T 14-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 Gene3D G3DSA:3.40.50.150 74 266 2.0E-57 T 14-10-2018 RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 SMART SM00138 8 267 2.0E-86 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 SUPERFAMILY SSF47757 5 74 9.55E-17 T 14-10-2018 RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 SUPERFAMILY SSF53335 75 265 9.94E-52 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 PIRSF PIRSF000410 1 267 6.9E-94 T 14-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 Pfam PF01739 CheR methyltransferase, SAM binding domain 75 260 6.8E-53 T 14-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 Gene3D G3DSA:1.10.155.10 1 73 7.1E-19 T 14-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 1.2E-40 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 PRINTS PR00996 Glutamate methyltransferase family signature 207 221 1.2E-40 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 PRINTS PR00996 Glutamate methyltransferase family signature 136 152 1.2E-40 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 PRINTS PR00996 Glutamate methyltransferase family signature 226 249 1.2E-40 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 PRINTS PR00996 Glutamate methyltransferase family signature 104 124 1.2E-40 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_05645 6669d2e0f9a7826161d3e0119a4f499e 267 PRINTS PR00996 Glutamate methyltransferase family signature 68 80 1.2E-40 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_10655 e50390486153c98d191eda377068a11c 173 SUPERFAMILY SSF158442 15 161 2.62E-44 T 14-10-2018 IPR023380 DsbB-like superfamily RY45_10655 e50390486153c98d191eda377068a11c 173 Gene3D G3DSA:1.20.1550.10 1 171 3.9E-57 T 14-10-2018 IPR023380 DsbB-like superfamily RY45_10655 e50390486153c98d191eda377068a11c 173 Pfam PF02600 Disulfide bond formation protein DsbB 12 160 3.9E-45 T 14-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RY45_10655 e50390486153c98d191eda377068a11c 173 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 168 22.38 T 14-10-2018 IPR022920 Disulphide bond formation protein DsbB RY45_20115 beb378c588cece619bb2f6467a4e3c70 393 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 25 380 9.8E-127 T 14-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20115 beb378c588cece619bb2f6467a4e3c70 393 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 23 390 41.959 T 14-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20115 beb378c588cece619bb2f6467a4e3c70 393 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 339 363 - T 14-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20115 beb378c588cece619bb2f6467a4e3c70 393 Pfam PF01098 Cell cycle protein 28 381 8.2E-112 T 14-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_19240 51d6380f7b9897027fbc0ad0079b746a 163 Gene3D G3DSA:3.90.950.20 1 163 5.7E-60 T 14-10-2018 IPR036653 CinA-like, C-terminal RY45_19240 51d6380f7b9897027fbc0ad0079b746a 163 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 15 159 1.8E-50 T 14-10-2018 IPR008136 CinA, C-terminal RY45_19240 51d6380f7b9897027fbc0ad0079b746a 163 SUPERFAMILY SSF142433 5 162 9.81E-56 T 14-10-2018 IPR036653 CinA-like, C-terminal RY45_19240 51d6380f7b9897027fbc0ad0079b746a 163 Pfam PF02464 Competence-damaged protein 9 161 2.4E-57 T 14-10-2018 IPR008136 CinA, C-terminal RY45_20805 b2fca70904cab4bfad8a7b2db5b5b4da 254 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 15 74 3.8E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_20805 b2fca70904cab4bfad8a7b2db5b5b4da 254 Gene3D G3DSA:1.10.260.40 4 73 4.6E-7 T 14-10-2018 RY45_20805 b2fca70904cab4bfad8a7b2db5b5b4da 254 SUPERFAMILY SSF47413 10 73 6.26E-9 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_20805 b2fca70904cab4bfad8a7b2db5b5b4da 254 SMART SM00530 14 68 0.0044 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_08680 8412cb8d06562ac7e288cedfa9239b9e 247 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_08680 8412cb8d06562ac7e288cedfa9239b9e 247 PIRSF PIRSF039085 5 247 2.1E-108 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RY45_08680 8412cb8d06562ac7e288cedfa9239b9e 247 SMART SM00382 34 220 3.5E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_08680 8412cb8d06562ac7e288cedfa9239b9e 247 SUPERFAMILY SSF52540 8 242 2.54E-79 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08680 8412cb8d06562ac7e288cedfa9239b9e 247 Pfam PF00005 ABC transporter 25 172 2.7E-36 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_08680 8412cb8d06562ac7e288cedfa9239b9e 247 Gene3D G3DSA:3.40.50.300 5 247 9.8E-76 T 14-10-2018 RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 Gene3D G3DSA:2.40.30.10 3 98 2.2E-20 T 14-10-2018 RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 5.1E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 5.1E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 5.1E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 5.1E-12 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 SUPERFAMILY SSF52343 100 230 3.27E-34 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 Gene3D G3DSA:3.40.50.80 99 232 1.8E-26 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 SUPERFAMILY SSF63380 3 97 2.33E-17 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_00785 2c2e89e3c0dae97c779af1a33820e651 232 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 3.9E-20 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RY45_17345 f0b4e2d838e12f604631814a649aa782 399 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 25.036 T 14-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 RY45_17345 f0b4e2d838e12f604631814a649aa782 399 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 3 397 5.5E-177 T 14-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 RY45_17345 f0b4e2d838e12f604631814a649aa782 399 Pfam PF03616 Sodium/glutamate symporter 2 366 1.8E-152 T 14-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 RY45_03250 eff39dc5373cc4fe94d4b4f97ba947a9 151 Pfam PF11756 Nitrous oxide-stimulated promoter 42 143 1.4E-40 T 14-10-2018 IPR020483 Uncharacterised protein family YgbA RY45_03250 eff39dc5373cc4fe94d4b4f97ba947a9 151 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 42 134 5.0E-23 T 14-10-2018 IPR020483 Uncharacterised protein family YgbA RY45_01740 55dd797f6b21f175379820dad8d21dda 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 10 210 6.5E-82 T 14-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RY45_01740 55dd797f6b21f175379820dad8d21dda 213 Gene3D G3DSA:3.20.20.70 1 213 4.1E-76 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_01740 55dd797f6b21f175379820dad8d21dda 213 Pfam PF01081 KDPG and KHG aldolase 12 203 1.1E-75 T 14-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RY45_01740 55dd797f6b21f175379820dad8d21dda 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 14-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RY45_01740 55dd797f6b21f175379820dad8d21dda 213 SUPERFAMILY SSF51569 3 211 6.23E-70 T 14-10-2018 RY45_01740 55dd797f6b21f175379820dad8d21dda 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 14-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RY45_08170 381e01acc050ee4a85f8b635f447551b 448 TIGRFAM TIGR00797 matE: MATE efflux family protein 18 417 1.8E-61 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_08170 381e01acc050ee4a85f8b635f447551b 448 PIRSF PIRSF006603 9 448 3.1E-79 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_08170 381e01acc050ee4a85f8b635f447551b 448 Pfam PF01554 MatE 18 177 8.0E-26 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_08170 381e01acc050ee4a85f8b635f447551b 448 Pfam PF01554 MatE 243 403 2.3E-31 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_09470 8944a78a10f8cbdd0162ab29f14362b9 378 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 368 1.5E-175 T 14-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RY45_09470 8944a78a10f8cbdd0162ab29f14362b9 378 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 56.706 T 14-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RY45_09470 8944a78a10f8cbdd0162ab29f14362b9 378 SUPERFAMILY SSF51713 1 364 1.57E-160 T 14-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RY45_09470 8944a78a10f8cbdd0162ab29f14362b9 378 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 368 1.9E-184 T 14-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RY45_09470 8944a78a10f8cbdd0162ab29f14362b9 378 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 7.4E-91 T 14-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RY45_09470 8944a78a10f8cbdd0162ab29f14362b9 378 Gene3D G3DSA:3.20.20.105 1 367 7.6E-170 T 14-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RY45_18705 f04cbcd30ff11e21d1ffec9168d582e9 209 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 2 209 9.2E-59 T 14-10-2018 IPR026387 Outer membrane protein RY45_02775 65b2f60e314eceae537e8645c464af97 172 Gene3D G3DSA:3.90.190.10 6 172 8.1E-28 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like RY45_02775 65b2f60e314eceae537e8645c464af97 172 SUPERFAMILY SSF52799 14 167 2.55E-29 T 14-10-2018 IPR029021 Protein-tyrosine phosphatase-like RY45_02775 65b2f60e314eceae537e8645c464af97 172 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 113 123 - T 14-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 RY45_02775 65b2f60e314eceae537e8645c464af97 172 Pfam PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) 38 134 1.5E-8 T 14-10-2018 IPR022778 CDKN3 domain GO:0004721|GO:0004725 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RY45_15590 468f9a9eb5e674a8452fab425bd2c8ec 575 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 1 563 0.0 T 14-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 RY45_15590 468f9a9eb5e674a8452fab425bd2c8ec 575 PIRSF PIRSF000719 1 575 8.5E-242 T 14-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 RY45_15590 468f9a9eb5e674a8452fab425bd2c8ec 575 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 44.287 T 14-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 RY45_15590 468f9a9eb5e674a8452fab425bd2c8ec 575 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 5.9E-244 T 14-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 RY45_09700 ccdf39a79cfef12d73f94fd906238300 224 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 76 174 2.4E-20 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09700 ccdf39a79cfef12d73f94fd906238300 224 Gene3D G3DSA:3.40.50.12280 23 191 6.0E-67 T 14-10-2018 RY45_09700 ccdf39a79cfef12d73f94fd906238300 224 SUPERFAMILY SSF56770 43 189 3.53E-62 T 14-10-2018 RY45_09700 ccdf39a79cfef12d73f94fd906238300 224 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 182 9.2E-67 T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09700 ccdf39a79cfef12d73f94fd906238300 224 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 148 164 - T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09700 ccdf39a79cfef12d73f94fd906238300 224 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 27 181 41.711 T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_07285 d79ce4c80ac7ca1e9e19498507acfe1a 127 Gene3D G3DSA:3.40.50.2300 1 126 8.0E-40 T 14-10-2018 RY45_07285 d79ce4c80ac7ca1e9e19498507acfe1a 127 Pfam PF00072 Response regulator receiver domain 7 119 1.3E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_07285 d79ce4c80ac7ca1e9e19498507acfe1a 127 SMART SM00448 5 119 9.9E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_07285 d79ce4c80ac7ca1e9e19498507acfe1a 127 SUPERFAMILY SSF52172 3 125 1.37E-36 T 14-10-2018 IPR011006 CheY-like superfamily RY45_17850 36dfe2bd4978d5d292afb6966f19f5bd 111 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 1 111 29.866 T 14-10-2018 IPR016716 Regulator of ribonuclease activity B RY45_17850 36dfe2bd4978d5d292afb6966f19f5bd 111 SUPERFAMILY SSF89946 1 111 6.41E-37 T 14-10-2018 IPR036701 RraB-like superfamily RY45_17850 36dfe2bd4978d5d292afb6966f19f5bd 111 Pfam PF06877 Regulator of ribonuclease activity B 6 107 1.5E-31 T 14-10-2018 IPR009671 Regulator of ribonuclease activity B domain RY45_17850 36dfe2bd4978d5d292afb6966f19f5bd 111 Gene3D G3DSA:3.30.70.970 1 111 1.8E-48 T 14-10-2018 IPR036701 RraB-like superfamily RY45_17850 36dfe2bd4978d5d292afb6966f19f5bd 111 PIRSF PIRSF018193 1 111 3.6E-46 T 14-10-2018 IPR016716 Regulator of ribonuclease activity B RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 TIGRFAM TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase 5 241 2.5E-129 T 14-10-2018 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 240 6.6E-54 T 14-10-2018 RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 Gene3D G3DSA:3.40.50.720 4 241 6.9E-72 T 14-10-2018 RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 194 1.4E-4 T 14-10-2018 RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.1E-39 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.1E-39 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 3.1E-39 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.1E-39 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.1E-39 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.1E-39 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 SUPERFAMILY SSF51735 5 240 9.79E-72 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.9E-8 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.9E-8 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17435 ff6ecb53eb5cda495ac1493d5f796608 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.9E-8 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_09900 1b5b2000a8330936baafca65fda382a7 526 Pfam PF03553 Na+/H+ antiporter family 165 491 2.0E-87 T 14-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 RY45_16070 05b6679d32263f516ca12599ede9d7a0 826 Gene3D G3DSA:1.50.10.10 322 821 3.0E-244 T 14-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RY45_16070 05b6679d32263f516ca12599ede9d7a0 826 Gene3D G3DSA:2.70.98.50 36 275 1.3E-73 T 14-10-2018 RY45_16070 05b6679d32263f516ca12599ede9d7a0 826 SUPERFAMILY SSF48208 307 821 3.06E-87 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RY45_16070 05b6679d32263f516ca12599ede9d7a0 826 Gene3D G3DSA:3.30.1390.40 498 545 3.0E-244 T 14-10-2018 RY45_16070 05b6679d32263f516ca12599ede9d7a0 826 Pfam PF01204 Trehalase 613 804 2.6E-12 T 14-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 RY45_01840 cc9edffca2e520fd9dc0d4c37b23ecbd 210 Pfam PF00297 Ribosomal protein L3 101 183 1.2E-13 T 14-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01840 cc9edffca2e520fd9dc0d4c37b23ecbd 210 SUPERFAMILY SSF50447 1 209 1.06E-82 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_01840 cc9edffca2e520fd9dc0d4c37b23ecbd 210 Gene3D G3DSA:2.40.30.10 129 210 2.9E-19 T 14-10-2018 RY45_01840 cc9edffca2e520fd9dc0d4c37b23ecbd 210 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 40.862 T 14-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01840 cc9edffca2e520fd9dc0d4c37b23ecbd 210 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 14-10-2018 IPR019926 Ribosomal protein L3, conserved site RY45_01840 cc9edffca2e520fd9dc0d4c37b23ecbd 210 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 1.7E-93 T 14-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01840 cc9edffca2e520fd9dc0d4c37b23ecbd 210 Gene3D G3DSA:2.40.50.620 33 97 4.3E-16 T 14-10-2018 RY45_15165 61b3767749622ac8278a6810c5fc666a 403 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 399 4.6E-142 T 14-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 RY45_15165 61b3767749622ac8278a6810c5fc666a 403 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 2.1E-26 T 14-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 RY45_15165 61b3767749622ac8278a6810c5fc666a 403 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 192 399 1.4E-70 T 14-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 RY45_15165 61b3767749622ac8278a6810c5fc666a 403 Pfam PF07670 Nucleoside recognition 90 185 1.0E-6 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RY45_03835 e98d89aa166319557afb74e4598435eb 396 Gene3D G3DSA:1.20.1530.10 3 387 1.6E-151 T 14-10-2018 IPR023171 Na/H antiporter domain superfamily RY45_03835 e98d89aa166319557afb74e4598435eb 396 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 387 23.589 T 14-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RY45_03835 e98d89aa166319557afb74e4598435eb 396 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 379 5.0E-172 T 14-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RY45_03835 e98d89aa166319557afb74e4598435eb 396 Pfam PF06965 Na+/H+ antiporter 1 7 380 2.9E-149 T 14-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RY45_05890 717a053c7001d300b3b8f47b607bb141 419 Pfam PF01593 Flavin containing amine oxidoreductase 12 302 2.3E-15 T 14-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RY45_05890 717a053c7001d300b3b8f47b607bb141 419 Gene3D G3DSA:1.10.3110.10 109 199 1.4E-21 T 14-10-2018 RY45_05890 717a053c7001d300b3b8f47b607bb141 419 SUPERFAMILY SSF51905 3 414 4.66E-48 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_05890 717a053c7001d300b3b8f47b607bb141 419 Gene3D G3DSA:3.50.50.60 6 288 1.4E-21 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_05890 717a053c7001d300b3b8f47b607bb141 419 Gene3D G3DSA:3.90.660.20 34 289 1.4E-21 T 14-10-2018 RY45_17940 f45fcae3d1a8ec57971b0da6f5f967b7 199 SUPERFAMILY SSF52266 19 197 1.53E-48 T 14-10-2018 RY45_17940 f45fcae3d1a8ec57971b0da6f5f967b7 199 Gene3D G3DSA:3.40.50.1110 18 199 2.1E-67 T 14-10-2018 IPR036514 SGNH hydrolase superfamily RY45_17940 f45fcae3d1a8ec57971b0da6f5f967b7 199 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 20 30 - T 14-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 RY45_17940 f45fcae3d1a8ec57971b0da6f5f967b7 199 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 22 181 2.0E-24 T 14-10-2018 IPR013830 SGNH hydrolase-type esterase domain RY45_01940 ddc5a89c6de6f65618ebfab94d181e55 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 4.7E-32 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01940 ddc5a89c6de6f65618ebfab94d181e55 118 Gene3D G3DSA:4.10.910.10 72 118 7.2E-26 T 14-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01940 ddc5a89c6de6f65618ebfab94d181e55 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.897 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01940 ddc5a89c6de6f65618ebfab94d181e55 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.0E-53 T 14-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01940 ddc5a89c6de6f65618ebfab94d181e55 118 Gene3D G3DSA:1.10.8.50 1 71 3.9E-27 T 14-10-2018 RY45_01940 ddc5a89c6de6f65618ebfab94d181e55 118 PIRSF PIRSF002134 1 118 4.7E-42 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01940 ddc5a89c6de6f65618ebfab94d181e55 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 14-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01940 ddc5a89c6de6f65618ebfab94d181e55 118 SUPERFAMILY SSF46946 2 114 2.5E-46 T 14-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RY45_18400 155fa2273a901aa041225447f03e1d78 505 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 490 4.4E-226 T 14-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 RY45_18400 155fa2273a901aa041225447f03e1d78 505 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site RY45_18400 155fa2273a901aa041225447f03e1d78 505 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site RY45_18400 155fa2273a901aa041225447f03e1d78 505 Pfam PF00474 Sodium:solute symporter family 35 437 4.1E-134 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RY45_18400 155fa2273a901aa041225447f03e1d78 505 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 3.3E-121 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RY45_18400 155fa2273a901aa041225447f03e1d78 505 Gene3D G3DSA:1.20.1730.10 23 494 1.6E-94 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SMART SM00086 508 550 1.7E-5 T 14-10-2018 IPR001610 PAC motif RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SMART SM00267 550 725 1.2E-39 T 14-10-2018 IPR000160 GGDEF domain RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 Gene3D G3DSA:3.20.20.450 738 989 3.5E-97 T 14-10-2018 IPR035919 EAL domain superfamily RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SUPERFAMILY SSF55785 447 559 1.08E-23 T 14-10-2018 IPR035965 PAS domain superfamily RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SUPERFAMILY SSF141868 741 986 9.81E-86 T 14-10-2018 IPR035919 EAL domain superfamily RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 Gene3D G3DSA:3.30.450.20 426 559 1.1E-26 T 14-10-2018 RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 Pfam PF00989 PAS fold 444 547 7.8E-17 T 14-10-2018 IPR013767 PAS fold GO:0006355 RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 557 723 1.7E-28 T 14-10-2018 IPR000160 GGDEF domain RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 Gene3D G3DSA:3.30.450.40 129 267 4.6E-7 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SUPERFAMILY SSF55073 566 727 3.69E-37 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SMART SM00091 436 502 4.5E-7 T 14-10-2018 IPR000014 PAS domain RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 Pfam PF00990 Diguanylate cyclase, GGDEF domain 561 720 7.0E-36 T 14-10-2018 IPR000160 GGDEF domain RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 Pfam PF01590 GAF domain 137 265 2.9E-6 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SUPERFAMILY SSF55781 295 437 5.23E-7 T 14-10-2018 RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 Gene3D G3DSA:3.30.70.270 560 737 9.4E-49 T 14-10-2018 RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 Pfam PF00563 EAL domain 741 976 3.2E-72 T 14-10-2018 IPR001633 EAL domain RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SUPERFAMILY SSF55781 136 266 1.98E-9 T 14-10-2018 RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 SMART SM00052 735 981 1.8E-104 T 14-10-2018 IPR001633 EAL domain RY45_09240 4e8785a5262e980b10b9f976d23b1eda 992 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 438 555 3.8E-20 T 14-10-2018 IPR000014 PAS domain RY45_05120 de12d8a557aa45259ad358166478a1c3 428 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.763 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 RY45_05120 de12d8a557aa45259ad358166478a1c3 428 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 9.4E-31 T 14-10-2018 IPR025121 GTPase HflX, N-terminal RY45_05120 de12d8a557aa45259ad358166478a1c3 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 5.9E-11 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05120 de12d8a557aa45259ad358166478a1c3 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 5.9E-11 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05120 de12d8a557aa45259ad358166478a1c3 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 5.9E-11 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05120 de12d8a557aa45259ad358166478a1c3 428 Pfam PF01926 50S ribosome-binding GTPase 200 318 2.1E-21 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_05120 de12d8a557aa45259ad358166478a1c3 428 SUPERFAMILY SSF52540 198 377 2.97E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05120 de12d8a557aa45259ad358166478a1c3 428 Gene3D G3DSA:3.40.50.11060 18 138 1.2E-37 T 14-10-2018 RY45_05120 de12d8a557aa45259ad358166478a1c3 428 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 8.3E-29 T 14-10-2018 IPR032305 GTP-binding protein, middle domain RY45_05120 de12d8a557aa45259ad358166478a1c3 428 Gene3D G3DSA:3.40.50.300 197 368 1.8E-39 T 14-10-2018 RY45_05120 de12d8a557aa45259ad358166478a1c3 428 PIRSF PIRSF006809 3 421 2.7E-150 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 RY45_05120 de12d8a557aa45259ad358166478a1c3 428 SUPERFAMILY SSF54980 365 422 5.25E-12 T 14-10-2018 IPR035647 EF-G domain III/V-like RY45_05120 de12d8a557aa45259ad358166478a1c3 428 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 360 2.1E-155 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 RY45_16755 ba8dfa9e272b8b3444803e0ca8332966 343 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 329 1.9E-84 T 14-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 RY45_16755 ba8dfa9e272b8b3444803e0ca8332966 343 Pfam PF06144 DNA polymerase III, delta subunit 20 188 1.0E-35 T 14-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 RY45_16755 ba8dfa9e272b8b3444803e0ca8332966 343 SUPERFAMILY SSF52540 1 208 1.02E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16755 ba8dfa9e272b8b3444803e0ca8332966 343 Gene3D G3DSA:3.40.50.300 1 138 1.3E-49 T 14-10-2018 RY45_16755 ba8dfa9e272b8b3444803e0ca8332966 343 Gene3D G3DSA:1.10.8.60 143 211 5.3E-19 T 14-10-2018 RY45_16755 ba8dfa9e272b8b3444803e0ca8332966 343 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 212 328 5.0E-17 T 14-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_16755 ba8dfa9e272b8b3444803e0ca8332966 343 Gene3D G3DSA:1.20.272.10 212 335 1.0E-33 T 14-10-2018 RY45_16755 ba8dfa9e272b8b3444803e0ca8332966 343 SUPERFAMILY SSF48019 210 328 6.63E-22 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RY45_13425 9330be65396c87b12e635d8ef65149b8 464 Pfam PF00860 Permease family 25 404 4.8E-107 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RY45_13425 9330be65396c87b12e635d8ef65149b8 464 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 25 437 1.7E-120 T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RY45_13425 9330be65396c87b12e635d8ef65149b8 464 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 354 374 - T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RY45_13425 9330be65396c87b12e635d8ef65149b8 464 TIGRFAM TIGR03173 pbuX: xanthine permease 30 440 8.4E-152 T 14-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 RY45_20415 a9dddd815c434db1ef9cad215f598477 196 Gene3D G3DSA:2.102.10.10 43 190 3.9E-49 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RY45_20415 a9dddd815c434db1ef9cad215f598477 196 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 190 3.2E-74 T 14-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RY45_20415 a9dddd815c434db1ef9cad215f598477 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 162 174 9.2E-8 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RY45_20415 a9dddd815c434db1ef9cad215f598477 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 9.2E-8 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RY45_20415 a9dddd815c434db1ef9cad215f598477 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 9.2E-8 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RY45_20415 a9dddd815c434db1ef9cad215f598477 196 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 3 40 4.4E-15 T 14-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RY45_20415 a9dddd815c434db1ef9cad215f598477 196 Pfam PF00355 Rieske [2Fe-2S] domain 58 176 3.4E-11 T 14-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RY45_20415 a9dddd815c434db1ef9cad215f598477 196 SUPERFAMILY SSF50022 30 193 7.2E-46 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RY45_18390 7afeba7585b8a5950c5f03bf6c4854f1 143 SMART SM00422 1 69 1.3E-17 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_18390 7afeba7585b8a5950c5f03bf6c4854f1 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 7.9E-10 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_18390 7afeba7585b8a5950c5f03bf6c4854f1 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 7.9E-10 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_18390 7afeba7585b8a5950c5f03bf6c4854f1 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 7.9E-10 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_18390 7afeba7585b8a5950c5f03bf6c4854f1 143 SUPERFAMILY SSF46955 1 109 1.76E-24 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_18390 7afeba7585b8a5950c5f03bf6c4854f1 143 Pfam PF13411 MerR HTH family regulatory protein 2 61 1.1E-12 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_18390 7afeba7585b8a5950c5f03bf6c4854f1 143 Gene3D G3DSA:1.10.1660.10 1 118 3.1E-28 T 14-10-2018 RY45_19485 c43658aad1be0572b48374e51cff313e 475 Pfam PF01467 Cytidylyltransferase-like 345 438 1.3E-14 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RY45_19485 c43658aad1be0572b48374e51cff313e 475 SUPERFAMILY SSF52374 340 471 2.22E-22 T 14-10-2018 RY45_19485 c43658aad1be0572b48374e51cff313e 475 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.182 T 14-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 RY45_19485 c43658aad1be0572b48374e51cff313e 475 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 5 312 2.1E-125 T 14-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 RY45_19485 c43658aad1be0572b48374e51cff313e 475 Gene3D G3DSA:3.40.50.620 318 474 3.5E-38 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_19485 c43658aad1be0572b48374e51cff313e 475 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 2.9E-17 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RY45_19485 c43658aad1be0572b48374e51cff313e 475 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 9.2E-62 T 14-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 RY45_19485 c43658aad1be0572b48374e51cff313e 475 Gene3D G3DSA:3.40.1190.20 2 310 8.3E-110 T 14-10-2018 IPR029056 Ribokinase-like RY45_19485 c43658aad1be0572b48374e51cff313e 475 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RY45_19485 c43658aad1be0572b48374e51cff313e 475 SUPERFAMILY SSF53613 11 309 2.18E-58 T 14-10-2018 IPR029056 Ribokinase-like RY45_19485 c43658aad1be0572b48374e51cff313e 475 Pfam PF00294 pfkB family carbohydrate kinase 11 305 3.9E-47 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB RY45_01165 4cd801666ec460566714eb20ac869404 340 Gene3D G3DSA:3.40.50.2300 168 301 2.6E-71 T 14-10-2018 RY45_01165 4cd801666ec460566714eb20ac869404 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 14-10-2018 RY45_01165 4cd801666ec460566714eb20ac869404 340 SUPERFAMILY SSF47413 12 70 1.88E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_01165 4cd801666ec460566714eb20ac869404 340 Gene3D G3DSA:1.10.260.40 4 70 6.6E-22 T 14-10-2018 RY45_01165 4cd801666ec460566714eb20ac869404 340 Pfam PF13377 Periplasmic binding protein-like domain 179 340 4.8E-32 T 14-10-2018 RY45_01165 4cd801666ec460566714eb20ac869404 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 1.0E-18 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_01165 4cd801666ec460566714eb20ac869404 340 SMART SM00354 12 82 4.6E-28 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_01165 4cd801666ec460566714eb20ac869404 340 Gene3D G3DSA:3.40.50.2300 75 317 2.6E-71 T 14-10-2018 RY45_01165 4cd801666ec460566714eb20ac869404 340 SUPERFAMILY SSF53822 71 339 3.34E-55 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 7.3E-23 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 Gene3D G3DSA:2.40.50.140 48 117 1.0E-34 T 14-10-2018 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 SMART SM00959 5 47 2.0E-14 T 14-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 250.251 T 14-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 Gene3D G3DSA:3.40.50.300 130 417 3.1E-133 T 14-10-2018 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 SUPERFAMILY SSF68912 1 46 1.57E-10 T 14-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.6E-14 T 14-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 Gene3D G3DSA:1.10.720.10 1 47 6.0E-21 T 14-10-2018 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 SMART SM00382 170 356 1.1E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 SMART SM00357 52 118 2.8E-19 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 SUPERFAMILY SSF50249 48 125 4.71E-29 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 8.0E-219 T 14-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 8.9E-32 T 14-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 RY45_00770 11632fe94adf8b44f6b4c9ae463312fb 421 SUPERFAMILY SSF52540 90 371 8.15E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 PRINTS PR01009 Flagellar M-ring protein signature 143 157 1.2E-28 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 PRINTS PR01009 Flagellar M-ring protein signature 187 205 1.2E-28 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 PRINTS PR01009 Flagellar M-ring protein signature 111 129 1.2E-28 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 PRINTS PR01009 Flagellar M-ring protein signature 259 277 1.2E-28 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 PRINTS PR01009 Flagellar M-ring protein signature 343 367 1.2E-28 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 PIRSF PIRSF004862 1 560 1.8E-118 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 Pfam PF08345 Flagellar M-ring protein C-terminal 246 412 5.2E-34 T 14-10-2018 IPR013556 Flagellar M-ring C-terminal RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 Pfam PF01514 Secretory protein of YscJ/FliF family 20 211 8.0E-64 T 14-10-2018 IPR006182 Secretory protein YscJ/FliF RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 Gene3D G3DSA:3.30.300.30 110 212 1.3E-13 T 14-10-2018 RY45_20320 d8832975aa41d4b9199ab84e21782c2f 561 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 6 556 9.5E-72 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_01855 0880cef83528b66dfde0977c1774251b 273 SUPERFAMILY SSF50249 2 125 2.16E-49 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_01855 0880cef83528b66dfde0977c1774251b 273 SUPERFAMILY SSF50104 126 269 4.69E-59 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily RY45_01855 0880cef83528b66dfde0977c1774251b 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 9.8E-34 T 14-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01855 0880cef83528b66dfde0977c1774251b 273 Gene3D G3DSA:4.10.950.10 196 273 2.5E-36 T 14-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01855 0880cef83528b66dfde0977c1774251b 273 Gene3D G3DSA:2.30.30.30 115 195 8.9E-33 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 RY45_01855 0880cef83528b66dfde0977c1774251b 273 SMART SM01382 124 251 7.1E-90 T 14-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RY45_01855 0880cef83528b66dfde0977c1774251b 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.3E-131 T 14-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RY45_01855 0880cef83528b66dfde0977c1774251b 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.111 T 14-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RY45_01855 0880cef83528b66dfde0977c1774251b 273 Gene3D G3DSA:2.40.50.140 1 114 9.6E-51 T 14-10-2018 RY45_01855 0880cef83528b66dfde0977c1774251b 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 2.2E-55 T 14-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RY45_01855 0880cef83528b66dfde0977c1774251b 273 SMART SM01383 42 118 4.5E-46 T 14-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01855 0880cef83528b66dfde0977c1774251b 273 PIRSF PIRSF002158 13 273 1.1E-100 T 14-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_03325 c20843078fe1a634b23fe42cb876feca 400 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 11 396 3.1E-102 T 14-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 RY45_03325 c20843078fe1a634b23fe42cb876feca 400 SUPERFAMILY SSF53067 8 149 1.42E-41 T 14-10-2018 RY45_03325 c20843078fe1a634b23fe42cb876feca 400 Pfam PF05134 Type II secretion system (T2SS), protein L 11 238 9.2E-65 T 14-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain RY45_03325 c20843078fe1a634b23fe42cb876feca 400 Pfam PF12693 GspL periplasmic domain 243 396 5.5E-42 T 14-10-2018 IPR025691 GspL periplasmic domain RY45_03325 c20843078fe1a634b23fe42cb876feca 400 SUPERFAMILY SSF53067 153 237 1.55E-21 T 14-10-2018 RY45_03325 c20843078fe1a634b23fe42cb876feca 400 PIRSF PIRSF015761 5 399 1.6E-48 T 14-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 RY45_03325 c20843078fe1a634b23fe42cb876feca 400 Gene3D G3DSA:3.30.1360.100 309 399 3.3E-24 T 14-10-2018 RY45_03325 c20843078fe1a634b23fe42cb876feca 400 Gene3D G3DSA:3.30.420.370 148 214 1.5E-82 T 14-10-2018 RY45_03325 c20843078fe1a634b23fe42cb876feca 400 Gene3D G3DSA:3.30.420.380 9 236 1.5E-82 T 14-10-2018 RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 PIRSF PIRSF002599 1 69 4.2E-25 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 PRINTS PR00050 Cold shock protein signature 42 60 4.7E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 PRINTS PR00050 Cold shock protein signature 27 36 4.7E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 PRINTS PR00050 Cold shock protein signature 7 22 4.7E-17 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 SUPERFAMILY SSF50249 5 68 3.57E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 8.0E-30 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 Gene3D G3DSA:2.40.50.140 5 68 7.9E-29 T 14-10-2018 RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 SMART SM00357 6 69 1.3E-29 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 RY45_17765 299c4712c30f7e353997a25ccd8c7544 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 14-10-2018 IPR019844 Cold-shock conserved site RY45_21230 e5d5d8d3837243e942f771051d6f18ec 274 Gene3D G3DSA:3.60.15.10 1 266 7.0E-60 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_21230 e5d5d8d3837243e942f771051d6f18ec 274 SMART SM00849 21 194 0.005 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_21230 e5d5d8d3837243e942f771051d6f18ec 274 Pfam PF00753 Metallo-beta-lactamase superfamily 24 78 1.1E-7 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_21230 e5d5d8d3837243e942f771051d6f18ec 274 SUPERFAMILY SSF56281 15 259 2.88E-25 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_02660 bb6ef92eccb0fcda84a07f7460a21f57 244 Gene3D G3DSA:3.40.50.10090 4 238 8.8E-72 T 14-10-2018 RY45_02660 bb6ef92eccb0fcda84a07f7460a21f57 244 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 235 3.8E-43 T 14-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02660 bb6ef92eccb0fcda84a07f7460a21f57 244 SUPERFAMILY SSF69618 4 239 6.8E-58 T 14-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02660 bb6ef92eccb0fcda84a07f7460a21f57 244 Gene3D G3DSA:3.40.50.10090 32 159 8.8E-72 T 14-10-2018 RY45_03410 85ff1fe0ef40e0c4645e9061d5451a8e 259 Gene3D G3DSA:3.40.1160.10 1 259 3.2E-69 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_03410 85ff1fe0ef40e0c4645e9061d5451a8e 259 Pfam PF00696 Amino acid kinase family 5 236 7.3E-40 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_03410 85ff1fe0ef40e0c4645e9061d5451a8e 259 TIGRFAM TIGR00761 argB: acetylglutamate kinase 5 234 1.1E-62 T 14-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_03410 85ff1fe0ef40e0c4645e9061d5451a8e 259 PIRSF PIRSF000728 1 258 1.1E-65 T 14-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_03410 85ff1fe0ef40e0c4645e9061d5451a8e 259 SUPERFAMILY SSF53633 4 257 1.57E-61 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_03410 85ff1fe0ef40e0c4645e9061d5451a8e 259 Hamap MF_00082 Acetylglutamate kinase [argB]. 3 252 41.567 T 14-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RY45_18365 0ce866cd1422910a23edd0d5104177f9 284 Gene3D G3DSA:3.40.50.150 1 284 4.0E-111 T 14-10-2018 RY45_18365 0ce866cd1422910a23edd0d5104177f9 284 SUPERFAMILY SSF53335 9 280 1.14E-91 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_18365 0ce866cd1422910a23edd0d5104177f9 284 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 279 6.1E-83 T 14-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RY45_18365 0ce866cd1422910a23edd0d5104177f9 284 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 268 41.196 T 14-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RY45_05860 ed52a42c10e3d5fb3677945f747c4b4a 209 SUPERFAMILY SSF56935 29 209 1.1E-7 T 14-10-2018 RY45_05860 ed52a42c10e3d5fb3677945f747c4b4a 209 Gene3D G3DSA:2.40.160.20 83 178 2.9E-6 T 14-10-2018 RY45_22235 5667c75492c94c352d57671b57448641 244 Gene3D G3DSA:3.40.50.300 1 244 3.9E-75 T 14-10-2018 RY45_22235 5667c75492c94c352d57671b57448641 244 Pfam PF00005 ABC transporter 17 168 2.8E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_22235 5667c75492c94c352d57671b57448641 244 SMART SM00382 26 216 1.8E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_22235 5667c75492c94c352d57671b57448641 244 PIRSF PIRSF039085 1 244 2.1E-98 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RY45_22235 5667c75492c94c352d57671b57448641 244 SUPERFAMILY SSF52540 1 238 3.96E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22235 5667c75492c94c352d57671b57448641 244 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_04130 9b9fe8e2bcd38dafcab8ab7f16e3a6ea 345 Gene3D G3DSA:3.20.20.70 1 345 3.7E-127 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_04130 9b9fe8e2bcd38dafcab8ab7f16e3a6ea 345 SUPERFAMILY SSF51395 1 332 4.58E-111 T 14-10-2018 RY45_04130 9b9fe8e2bcd38dafcab8ab7f16e3a6ea 345 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 331 2.3E-89 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RY45_06425 200fff913b59371411a99db55c47b144 314 Pfam PF12697 Alpha/beta hydrolase family 56 296 2.1E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_06425 200fff913b59371411a99db55c47b144 314 SUPERFAMILY SSF53474 5 311 3.69E-39 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_06425 200fff913b59371411a99db55c47b144 314 Gene3D G3DSA:3.40.50.1820 12 293 1.4E-82 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_06425 200fff913b59371411a99db55c47b144 314 Gene3D G3DSA:1.10.10.800 143 233 1.4E-82 T 14-10-2018 RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 SUPERFAMILY SSF46785 572 613 5.51E-6 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 Pfam PF09107 Elongation factor SelB, winged helix 576 613 4.3E-8 T 14-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 Pfam PF03144 Elongation factor Tu domain 2 198 264 8.9E-8 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 7 364 1.0E-74 T 14-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 Gene3D G3DSA:3.40.50.300 1 174 4.7E-42 T 14-10-2018 RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 SUPERFAMILY SSF50447 181 266 1.0E-19 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 SUPERFAMILY SSF52540 6 199 1.11E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 SUPERFAMILY SSF46785 419 467 6.31E-5 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 Gene3D G3DSA:1.10.10.10 558 615 8.1E-7 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 Gene3D G3DSA:2.40.30.10 181 268 1.9E-22 T 14-10-2018 RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 Pfam PF00009 Elongation factor Tu GTP binding domain 8 168 1.5E-27 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_13025 4716cef67bb14656a6812745ce7bb2a9 627 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 161 3.3E-18 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_03175 0ef7bca9f1b5610457a3cdc7a360618b 191 Gene3D G3DSA:1.10.287.110 131 191 3.2E-11 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_03175 0ef7bca9f1b5610457a3cdc7a360618b 191 SUPERFAMILY SSF46565 133 188 2.36E-11 T 14-10-2018 IPR036869 Chaperone J-domain superfamily RY45_03175 0ef7bca9f1b5610457a3cdc7a360618b 191 Pfam PF12339 DNA-J related protein 7 130 2.5E-37 T 14-10-2018 IPR021059 DnaJ-related protein, N-terminal RY45_03175 0ef7bca9f1b5610457a3cdc7a360618b 191 SMART SM00271 138 191 0.0069 T 14-10-2018 IPR001623 DnaJ domain RY45_17130 5ca1c1369e8bdedbcfa29a5b565dec0c 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 310 5.6E-31 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_17130 5ca1c1369e8bdedbcfa29a5b565dec0c 313 Gene3D G3DSA:1.10.3720.10 87 307 2.0E-27 T 14-10-2018 IPR035906 MetI-like superfamily RY45_17130 5ca1c1369e8bdedbcfa29a5b565dec0c 313 SUPERFAMILY SSF161098 92 296 5.49E-27 T 14-10-2018 IPR035906 MetI-like superfamily RY45_17130 5ca1c1369e8bdedbcfa29a5b565dec0c 313 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 19 70 3.0E-11 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RY45_09600 f655eef7bc415f3ab39395935e7ed323 216 Pfam PF09976 Tetratricopeptide repeat-like domain 15 204 3.7E-59 T 14-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 RY45_09600 f655eef7bc415f3ab39395935e7ed323 216 SUPERFAMILY SSF48452 90 186 1.22E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09600 f655eef7bc415f3ab39395935e7ed323 216 Gene3D G3DSA:1.25.40.10 4 213 1.8E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09600 f655eef7bc415f3ab39395935e7ed323 216 PIRSF PIRSF006170 1 208 3.6E-55 T 14-10-2018 IPR026039 Uncharacterised protein family UPF0070 RY45_13395 3994d046213214a109148839f82b9d1a 105 SUPERFAMILY SSF117782 1 105 8.5E-39 T 14-10-2018 IPR035439 UPF0145 domain superfamily RY45_13395 3994d046213214a109148839f82b9d1a 105 Gene3D G3DSA:3.30.110.70 2 105 5.5E-44 T 14-10-2018 RY45_13395 3994d046213214a109148839f82b9d1a 105 Pfam PF01906 Putative heavy-metal-binding 1 105 1.3E-40 T 14-10-2018 IPR002765 Uncharacterised protein family UPF0145 RY45_13395 3994d046213214a109148839f82b9d1a 105 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 24.844 T 14-10-2018 IPR002765 Uncharacterised protein family UPF0145 RY45_15725 01e44267041706b41efc03aa28c51750 408 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 283 383 4.7E-12 T 14-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain RY45_15725 01e44267041706b41efc03aa28c51750 408 SUPERFAMILY SSF56300 1 337 1.38E-47 T 14-10-2018 RY45_15725 01e44267041706b41efc03aa28c51750 408 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 9.3E-55 T 14-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 RY45_15725 01e44267041706b41efc03aa28c51750 408 Pfam PF00149 Calcineurin-like phosphoesterase 1 95 3.2E-12 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RY45_15725 01e44267041706b41efc03aa28c51750 408 Gene3D G3DSA:3.60.21.10 1 281 1.1E-75 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 SUPERFAMILY SSF51445 30 432 2.25E-64 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 PRINTS PR00110 Alpha-amylase signature 96 107 3.6E-13 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 PRINTS PR00110 Alpha-amylase signature 209 220 3.6E-13 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 PRINTS PR00110 Alpha-amylase signature 63 80 3.6E-13 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 PRINTS PR00110 Alpha-amylase signature 238 256 3.6E-13 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 PRINTS PR00110 Alpha-amylase signature 304 316 3.6E-13 T 14-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 SMART SM00642 22 379 1.1E-48 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 Gene3D G3DSA:3.20.20.80 18 384 3.5E-80 T 14-10-2018 RY45_06950 0b4b2689e4dabb0ff31ff6654e3e2585 465 Pfam PF00128 Alpha amylase, catalytic domain 35 238 1.7E-16 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_12665 f2e56d62bba9fdb1a64dd9a040ac2892 538 PIRSF PIRSF002741 1 538 6.7E-105 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_12665 f2e56d62bba9fdb1a64dd9a040ac2892 538 Gene3D G3DSA:3.90.76.10 67 191 1.4E-183 T 14-10-2018 RY45_12665 f2e56d62bba9fdb1a64dd9a040ac2892 538 Gene3D G3DSA:3.10.105.10 292 507 1.4E-183 T 14-10-2018 RY45_12665 f2e56d62bba9fdb1a64dd9a040ac2892 538 SUPERFAMILY SSF53850 32 530 5.07E-139 T 14-10-2018 RY45_12665 f2e56d62bba9fdb1a64dd9a040ac2892 538 Gene3D G3DSA:3.40.190.10 38 519 1.4E-183 T 14-10-2018 RY45_12665 f2e56d62bba9fdb1a64dd9a040ac2892 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 86 458 1.7E-86 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_16900 dd887777f15152d7eb4723407b408c29 466 Gene3D G3DSA:3.30.2290.10 7 227 9.7E-16 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal RY45_16900 dd887777f15152d7eb4723407b408c29 466 Pfam PF01523 Putative modulator of DNA gyrase 26 319 5.2E-56 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 RY45_16900 dd887777f15152d7eb4723407b408c29 466 SUPERFAMILY SSF111283 10 465 3.14E-109 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 Pfam PF00318 Ribosomal protein S2 9 224 3.8E-98 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 42.653 T 14-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 Gene3D G3DSA:3.40.50.10490 8 218 1.0E-96 T 14-10-2018 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 14-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 SUPERFAMILY SSF52313 6 229 1.07E-99 T 14-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 PRINTS PR00395 Ribosomal protein S2 signature 175 186 3.9E-39 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 PRINTS PR00395 Ribosomal protein S2 signature 37 46 3.9E-39 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 PRINTS PR00395 Ribosomal protein S2 signature 87 104 3.9E-39 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 PRINTS PR00395 Ribosomal protein S2 signature 196 210 3.9E-39 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 PRINTS PR00395 Ribosomal protein S2 signature 6 24 3.9E-39 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 PRINTS PR00395 Ribosomal protein S2 signature 158 175 3.9E-39 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 1.0E-111 T 14-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 14-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RY45_06295 7bd1ba5c1c11132565ae173642c48917 242 Gene3D G3DSA:1.10.287.610 103 150 1.0E-96 T 14-10-2018 RY45_13320 b89af8924ddff7ce92289ee40a4e9df3 162 Gene3D G3DSA:3.40.630.30 4 160 9.8E-33 T 14-10-2018 RY45_13320 b89af8924ddff7ce92289ee40a4e9df3 162 SUPERFAMILY SSF55729 10 159 7.38E-28 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_13320 b89af8924ddff7ce92289ee40a4e9df3 162 Pfam PF13673 Acetyltransferase (GNAT) domain 38 156 9.3E-17 T 14-10-2018 IPR000182 GNAT domain RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 PIRSF PIRSF000106 1 571 1.4E-216 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 Pfam PF03949 Malic enzyme, NAD binding domain 278 537 2.4E-92 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 SUPERFAMILY SSF51735 278 570 5.69E-87 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 SMART SM01274 88 268 1.8E-97 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 PRINTS PR00072 Malic enzyme signature 190 212 7.0E-70 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 PRINTS PR00072 Malic enzyme signature 94 118 7.0E-70 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 PRINTS PR00072 Malic enzyme signature 274 290 7.0E-70 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 PRINTS PR00072 Malic enzyme signature 249 267 7.0E-70 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 PRINTS PR00072 Malic enzyme signature 416 432 7.0E-70 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 PRINTS PR00072 Malic enzyme signature 154 183 7.0E-70 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 PRINTS PR00072 Malic enzyme signature 305 321 7.0E-70 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 Gene3D G3DSA:3.40.50.10380 22 275 1.9E-104 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 SUPERFAMILY SSF53223 9 277 7.91E-100 T 14-10-2018 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 SMART SM00919 278 539 1.9E-112 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 ProSitePatterns PS00331 Malic enzymes signature. 274 290 - T 14-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 Pfam PF00390 Malic enzyme, N-terminal domain 88 268 2.5E-71 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RY45_15795 63821fbfd655e96c1ce5858a25a06a78 571 Gene3D G3DSA:3.40.50.720 276 570 4.7E-101 T 14-10-2018 RY45_21610 1d83822871470be5d54d14f4c260371e 459 Gene3D G3DSA:3.90.640.10 334 380 2.7E-15 T 14-10-2018 RY45_21610 1d83822871470be5d54d14f4c260371e 459 Gene3D G3DSA:3.30.420.40 381 435 2.7E-15 T 14-10-2018 RY45_21610 1d83822871470be5d54d14f4c260371e 459 SUPERFAMILY SSF53067 210 449 6.63E-32 T 14-10-2018 RY45_21610 1d83822871470be5d54d14f4c260371e 459 SUPERFAMILY SSF53067 1 205 2.24E-24 T 14-10-2018 RY45_21610 1d83822871470be5d54d14f4c260371e 459 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 215 228 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RY45_21610 1d83822871470be5d54d14f4c260371e 459 Pfam PF00012 Hsp70 protein 335 450 3.3E-7 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_21610 1d83822871470be5d54d14f4c260371e 459 Pfam PF00012 Hsp70 protein 131 262 3.2E-14 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_05335 2c58e7d967610b1da653f4bdcc203cc6 279 Pfam PF01497 Periplasmic binding protein 27 251 2.0E-27 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain RY45_05335 2c58e7d967610b1da653f4bdcc203cc6 279 SUPERFAMILY SSF53807 25 275 3.92E-44 T 14-10-2018 RY45_05335 2c58e7d967610b1da653f4bdcc203cc6 279 Gene3D G3DSA:3.40.50.1980 21 137 1.2E-32 T 14-10-2018 RY45_05335 2c58e7d967610b1da653f4bdcc203cc6 279 Gene3D G3DSA:3.40.50.1980 138 278 4.1E-36 T 14-10-2018 RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 111 119 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 209 219 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 Pfam PF00483 Nucleotidyl transferase 20 289 5.4E-68 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 24 43 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 SUPERFAMILY SSF51161 308 409 5.27E-16 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 15 421 51.488 T 14-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 Gene3D G3DSA:3.90.550.10 9 298 8.2E-91 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 19 395 4.4E-154 T 14-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 Gene3D G3DSA:2.160.10.10 299 424 1.8E-36 T 14-10-2018 RY45_12895 fe5c0b50762a157118bb2d0b13d775db 424 SUPERFAMILY SSF53448 19 375 1.08E-76 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 PRINTS PR01050 Pyruvate kinase family signature 296 314 8.3E-56 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 PRINTS PR01050 Pyruvate kinase family signature 246 270 8.3E-56 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 PRINTS PR01050 Pyruvate kinase family signature 271 295 8.3E-56 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 PRINTS PR01050 Pyruvate kinase family signature 315 331 8.3E-56 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 PRINTS PR01050 Pyruvate kinase family signature 186 200 8.3E-56 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 PRINTS PR01050 Pyruvate kinase family signature 59 75 8.3E-56 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 PRINTS PR01050 Pyruvate kinase family signature 219 245 8.3E-56 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 Gene3D G3DSA:3.20.20.60 2 337 4.5E-129 T 14-10-2018 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 SUPERFAMILY SSF50800 70 165 2.79E-23 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 Pfam PF00224 Pyruvate kinase, barrel domain 1 342 2.2E-122 T 14-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 Gene3D G3DSA:2.40.33.10 70 168 4.5E-129 T 14-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 SUPERFAMILY SSF51621 1 342 6.28E-88 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_00140 0c0cff2cfd4f3146633fea604bce908e 359 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 342 1.5E-131 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 SUPERFAMILY SSF46785 9 82 3.02E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 SUPERFAMILY SSF48008 97 235 4.97E-21 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 3.3E-10 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 3.3E-10 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 Gene3D G3DSA:1.20.120.530 97 236 9.7E-29 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 SMART SM00895 99 227 3.5E-20 T 14-10-2018 IPR011711 GntR, C-terminal RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 8.0E-25 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 Pfam PF07729 FCD domain 99 226 4.5E-22 T 14-10-2018 IPR011711 GntR, C-terminal RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 Gene3D G3DSA:1.10.10.10 1 75 1.2E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_20010 e370595a5e9f8b96f68d9364e10595b0 254 SMART SM00345 15 74 3.6E-28 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 18 472 53.752 T 14-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 Gene3D G3DSA:2.40.30.10 240 326 6.3E-26 T 14-10-2018 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 Pfam PF00009 Elongation factor Tu GTP binding domain 26 212 4.7E-44 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 SUPERFAMILY SSF50465 331 433 9.59E-33 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 82 97 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 SUPERFAMILY SSF50447 242 326 3.53E-23 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 Gene3D G3DSA:2.40.30.10 329 434 4.6E-35 T 14-10-2018 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 SUPERFAMILY SSF52540 20 233 2.31E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 27 432 1.1E-199 T 14-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 33 212 5.4E-14 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 PRINTS PR00315 GTP-binding elongation factor signature 162 171 9.3E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 PRINTS PR00315 GTP-binding elongation factor signature 89 97 9.3E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 PRINTS PR00315 GTP-binding elongation factor signature 28 41 9.3E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 PRINTS PR00315 GTP-binding elongation factor signature 109 119 9.3E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 PRINTS PR00315 GTP-binding elongation factor signature 125 136 9.3E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RY45_18325 c0bac4b6c0633395ffbaab6eb2d50610 475 Gene3D G3DSA:3.40.50.300 4 238 1.5E-72 T 14-10-2018 RY45_02195 3b63448237f0b08229ee67b3d5c3ae58 511 Pfam PF00563 EAL domain 265 490 3.3E-60 T 14-10-2018 IPR001633 EAL domain RY45_02195 3b63448237f0b08229ee67b3d5c3ae58 511 Gene3D G3DSA:3.20.20.450 257 503 2.7E-69 T 14-10-2018 IPR035919 EAL domain superfamily RY45_02195 3b63448237f0b08229ee67b3d5c3ae58 511 SUPERFAMILY SSF141868 264 504 7.19E-69 T 14-10-2018 IPR035919 EAL domain superfamily RY45_02195 3b63448237f0b08229ee67b3d5c3ae58 511 SMART SM00052 257 495 1.2E-72 T 14-10-2018 IPR001633 EAL domain RY45_05750 eaf7f6c6d10a1c3b315dfe4285fdf7c0 110 Pfam PF08921 Domain of unknown function (DUF1904) 1 109 3.6E-27 T 14-10-2018 IPR015017 Protein of unknown function DUF1904 RY45_05750 eaf7f6c6d10a1c3b315dfe4285fdf7c0 110 Gene3D G3DSA:3.30.429.10 1 110 1.1E-31 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily RY45_05750 eaf7f6c6d10a1c3b315dfe4285fdf7c0 110 SUPERFAMILY SSF55331 1 110 1.14E-30 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily RY45_22245 35671c0be40b453dd1619d1c98d9b0d9 252 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 246 1.4E-60 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_22245 35671c0be40b453dd1619d1c98d9b0d9 252 SMART SM00062 27 248 1.0E-73 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_22245 35671c0be40b453dd1619d1c98d9b0d9 252 Gene3D G3DSA:3.40.190.10 94 206 7.6E-30 T 14-10-2018 RY45_22245 35671c0be40b453dd1619d1c98d9b0d9 252 SUPERFAMILY SSF53850 9 249 7.81E-60 T 14-10-2018 RY45_02060 f74b1e2eed5b864b7433ff7ef0379ccc 350 Gene3D G3DSA:2.40.30.170 227 344 8.2E-36 T 14-10-2018 RY45_02060 f74b1e2eed5b864b7433ff7ef0379ccc 350 SUPERFAMILY SSF111369 45 109 8.5E-8 T 14-10-2018 RY45_02060 f74b1e2eed5b864b7433ff7ef0379ccc 350 Pfam PF00529 HlyD membrane-fusion protein of T1SS 115 339 9.0E-9 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_02060 f74b1e2eed5b864b7433ff7ef0379ccc 350 Gene3D G3DSA:2.40.50.100 45 113 4.4E-13 T 14-10-2018 RY45_02060 f74b1e2eed5b864b7433ff7ef0379ccc 350 Pfam PF13533 Biotin-lipoyl like 44 92 5.0E-15 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RY45_02060 f74b1e2eed5b864b7433ff7ef0379ccc 350 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 158 288 7.1E-19 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_02060 f74b1e2eed5b864b7433ff7ef0379ccc 350 Gene3D G3DSA:1.10.287.470 114 179 6.5E-7 T 14-10-2018 RY45_02060 f74b1e2eed5b864b7433ff7ef0379ccc 350 SUPERFAMILY SSF111369 116 286 5.62E-13 T 14-10-2018 RY45_00365 c201aeaa472fa116529fa5d2b5ab8fb2 819 Pfam PF10145 Phage-related minor tail protein 246 447 1.2E-25 T 14-10-2018 IPR010090 Phage tail tape measure protein RY45_00365 c201aeaa472fa116529fa5d2b5ab8fb2 819 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 197 554 3.5E-85 T 14-10-2018 IPR010090 Phage tail tape measure protein RY45_00365 c201aeaa472fa116529fa5d2b5ab8fb2 819 SUPERFAMILY SSF58100 133 258 9.15E-5 T 14-10-2018 RY45_09525 cdc0132b1398ee7973fb2769a22f3b53 167 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 2.9E-65 T 14-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 RY45_09525 cdc0132b1398ee7973fb2769a22f3b53 167 Gene3D G3DSA:1.10.10.10 1 144 5.0E-54 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09525 cdc0132b1398ee7973fb2769a22f3b53 167 SUPERFAMILY SSF46785 2 133 1.27E-36 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09525 cdc0132b1398ee7973fb2769a22f3b53 167 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 6.0E-47 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type RY45_09525 cdc0132b1398ee7973fb2769a22f3b53 167 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 14-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site RY45_09525 cdc0132b1398ee7973fb2769a22f3b53 167 Pfam PF02082 Transcriptional regulator 1 83 9.3E-28 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type RY45_05110 9e9257cc23e871e6fbc33a4d1934f147 298 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 1 283 5.2E-110 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RY45_05110 9e9257cc23e871e6fbc33a4d1934f147 298 Pfam PF01715 IPP transferase 31 276 2.7E-84 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RY45_05110 9e9257cc23e871e6fbc33a4d1934f147 298 Gene3D G3DSA:1.10.20.140 104 175 2.3E-103 T 14-10-2018 RY45_05110 9e9257cc23e871e6fbc33a4d1934f147 298 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 1 293 27.776 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RY45_05110 9e9257cc23e871e6fbc33a4d1934f147 298 SUPERFAMILY SSF52540 1 140 1.11E-18 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05110 9e9257cc23e871e6fbc33a4d1934f147 298 Gene3D G3DSA:3.40.50.300 1 280 2.3E-103 T 14-10-2018 RY45_07025 b32da40df732fea510f02f07a9da6481 305 Pfam PF03734 L,D-transpeptidase catalytic domain 97 233 7.7E-20 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RY45_07025 b32da40df732fea510f02f07a9da6481 305 SUPERFAMILY SSF141523 94 233 6.93E-30 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_07025 b32da40df732fea510f02f07a9da6481 305 Gene3D G3DSA:2.40.440.10 22 304 1.1E-80 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_19735 0c8667ea6442f8227c4bbe8fd2e69857 271 Gene3D G3DSA:1.10.3720.10 20 265 1.2E-46 T 14-10-2018 IPR035906 MetI-like superfamily RY45_19735 0c8667ea6442f8227c4bbe8fd2e69857 271 SUPERFAMILY SSF161098 12 260 1.57E-49 T 14-10-2018 IPR035906 MetI-like superfamily RY45_19735 0c8667ea6442f8227c4bbe8fd2e69857 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 258 6.3E-13 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 SUPERFAMILY SSF48557 5 459 1.91E-139 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 PRINTS PR00149 Fumarate lyase superfamily signature 322 338 4.3E-27 T 14-10-2018 IPR000362 Fumarate lyase family RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 PRINTS PR00149 Fumarate lyase superfamily signature 185 203 4.3E-27 T 14-10-2018 IPR000362 Fumarate lyase family RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 PRINTS PR00149 Fumarate lyase superfamily signature 140 158 4.3E-27 T 14-10-2018 IPR000362 Fumarate lyase family RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 PRINTS PR00149 Fumarate lyase superfamily signature 276 303 4.3E-27 T 14-10-2018 IPR000362 Fumarate lyase family RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 ProSitePatterns PS00163 Fumarate lyases signature. 322 331 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 Gene3D G3DSA:1.10.275.10 8 144 2.6E-56 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 Pfam PF10415 Fumarase C C-terminus 413 465 1.7E-17 T 14-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 Pfam PF00206 Lyase 15 347 1.8E-100 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 PRINTS PR00145 Argininosuccinate lyase family signature 139 161 6.5E-5 T 14-10-2018 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 PRINTS PR00145 Argininosuccinate lyase family signature 180 200 6.5E-5 T 14-10-2018 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 PRINTS PR00145 Argininosuccinate lyase family signature 322 338 6.5E-5 T 14-10-2018 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 8 475 7.4E-242 T 14-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 Gene3D G3DSA:1.10.40.30 413 462 5.3E-28 T 14-10-2018 RY45_04785 ae13184af45d56c7139b794a72cc3f1a 480 Gene3D G3DSA:1.20.200.10 145 412 1.9E-111 T 14-10-2018 RY45_15750 b303bdba9469d154bd9b9ea576e5dcde 393 Pfam PF04389 Peptidase family M28 181 378 5.3E-39 T 14-10-2018 IPR007484 Peptidase M28 RY45_15750 b303bdba9469d154bd9b9ea576e5dcde 393 SUPERFAMILY SSF53187 108 389 5.19E-67 T 14-10-2018 RY45_15750 b303bdba9469d154bd9b9ea576e5dcde 393 PIRSF PIRSF036685 2 393 6.1E-211 T 14-10-2018 IPR012189 Peptidase M28E, aminopeptidase AP1 RY45_15750 b303bdba9469d154bd9b9ea576e5dcde 393 Gene3D G3DSA:3.40.630.10 105 392 4.9E-86 T 14-10-2018 RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 Gene3D G3DSA:2.30.130.90 312 475 3.5E-51 T 14-10-2018 RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 Gene3D G3DSA:3.40.50.150 2 310 1.4E-97 T 14-10-2018 RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 122 132 1.2E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 239 255 1.2E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 293 310 1.2E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 89 103 1.2E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 189 201 1.2E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 40 310 7.3E-94 T 14-10-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 420 469 3.3E-12 T 14-10-2018 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 SUPERFAMILY SSF53335 7 310 1.25E-62 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 188 199 - T 14-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 7 103 4.4E-27 T 14-10-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 Pfam PF01189 16S rRNA methyltransferase RsmB/F 117 309 2.4E-48 T 14-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 RY45_11555 7b3fbc2d0a711d9b6f66a17ca711a128 475 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 5 474 64.18 T 14-10-2018 IPR023545 rRNA small subunit methyltransferase F GO:0008649 RY45_18765 cbcb1c9133ebb5fb2a4d3094bdba1491 233 Pfam PF01168 Alanine racemase, N-terminal domain 11 230 1.4E-30 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RY45_18765 cbcb1c9133ebb5fb2a4d3094bdba1491 233 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 1.2E-75 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RY45_18765 cbcb1c9133ebb5fb2a4d3094bdba1491 233 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 229 32.508 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RY45_18765 cbcb1c9133ebb5fb2a4d3094bdba1491 233 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RY45_18765 cbcb1c9133ebb5fb2a4d3094bdba1491 233 Gene3D G3DSA:3.20.20.10 1 233 7.6E-84 T 14-10-2018 IPR029066 PLP-binding barrel RY45_18765 cbcb1c9133ebb5fb2a4d3094bdba1491 233 SUPERFAMILY SSF51419 1 228 1.19E-78 T 14-10-2018 IPR029066 PLP-binding barrel RY45_18765 cbcb1c9133ebb5fb2a4d3094bdba1491 233 PIRSF PIRSF004848 1 233 1.2E-73 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 SUPERFAMILY SSF46604 90 138 1.91E-14 T 14-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 90 134 4.7E-13 T 14-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 Gene3D G3DSA:2.60.15.10 5 92 7.8E-30 T 14-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 12 92 4.0E-29 T 14-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 7 86 5.1E-28 T 14-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 5 133 20.726 T 14-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 SUPERFAMILY SSF51344 7 88 1.57E-23 T 14-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 7 134 6.6E-43 T 14-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22120 ec817dbc9da9f0826cbd1d8ac022ebfd 142 Gene3D G3DSA:1.20.5.440 93 135 3.7E-19 T 14-10-2018 RY45_21435 931750246d9dd0a92d63f59ff0e53d83 188 SUPERFAMILY SSF88697 1 184 8.45E-49 T 14-10-2018 IPR015947 PUA-like superfamily RY45_21435 931750246d9dd0a92d63f59ff0e53d83 188 Gene3D G3DSA:1.10.4060.10 111 188 2.0E-7 T 14-10-2018 RY45_21435 931750246d9dd0a92d63f59ff0e53d83 188 Gene3D G3DSA:2.30.130.40 1 107 3.6E-26 T 14-10-2018 RY45_21435 931750246d9dd0a92d63f59ff0e53d83 188 SMART SM00464 2 186 8.2E-5 T 14-10-2018 IPR003111 Lon, substrate-binding domain RY45_21435 931750246d9dd0a92d63f59ff0e53d83 188 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 3 140 5.1E-16 T 14-10-2018 IPR003111 Lon, substrate-binding domain RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 4.1E-48 T 14-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 SUPERFAMILY SSF54686 1 134 1.83E-54 T 14-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 Gene3D G3DSA:3.90.1170.10 1 137 3.1E-56 T 14-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.1E-39 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.1E-39 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.1E-39 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.1E-39 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 14-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 1.9E-58 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 14-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01875 939ff4544a1a0074cedc77e65e08000d 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.194 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04750 bf7f21c2a761327869202cc3e3855f40 183 SUPERFAMILY SSF55729 4 179 7.33E-43 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_04750 bf7f21c2a761327869202cc3e3855f40 183 Gene3D G3DSA:3.40.630.30 5 181 6.1E-42 T 14-10-2018 RY45_04750 bf7f21c2a761327869202cc3e3855f40 183 Pfam PF13302 Acetyltransferase (GNAT) domain 13 155 6.9E-18 T 14-10-2018 IPR000182 GNAT domain RY45_12400 02b12c06b6d311deaea316f908ec7cac 1057 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 118 213 1.4E-10 T 14-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 RY45_12400 02b12c06b6d311deaea316f908ec7cac 1057 Pfam PF04851 Type III restriction enzyme, res subunit 289 491 2.9E-12 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RY45_12400 02b12c06b6d311deaea316f908ec7cac 1057 Gene3D G3DSA:3.40.50.300 289 501 2.8E-22 T 14-10-2018 RY45_12400 02b12c06b6d311deaea316f908ec7cac 1057 SMART SM00487 285 520 4.4E-9 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_12400 02b12c06b6d311deaea316f908ec7cac 1057 Gene3D G3DSA:3.40.50.300 520 745 6.9E-22 T 14-10-2018 RY45_12400 02b12c06b6d311deaea316f908ec7cac 1057 SUPERFAMILY SSF52540 276 499 7.82E-19 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 182 249 5.0E-24 T 14-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 SUPERFAMILY SSF88697 252 312 9.94E-14 T 14-10-2018 IPR015947 PUA-like superfamily RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 34 181 2.1E-57 T 14-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 12 310 19.349 T 14-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 Gene3D G3DSA:3.30.2350.10 2 250 2.2E-96 T 14-10-2018 RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 253 310 8.2E-20 T 14-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 13 220 9.3E-88 T 14-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 SUPERFAMILY SSF55120 12 249 7.48E-84 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_17025 95908876e3b255fe533bd4b24ea4c57d 319 Gene3D G3DSA:2.30.130.10 251 314 9.4E-24 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 RY45_04955 93bcdfbe7854c01cfc8b18774ff5fc95 146 Pfam PF04217 Protein of unknown function, DUF412 8 144 7.3E-55 T 14-10-2018 IPR007334 Uncharacterised protein family UPF0208 RY45_04185 ac8a6ee0048ac0bf292f22b2074bb2c7 415 Gene3D G3DSA:3.40.50.300 1 212 5.2E-79 T 14-10-2018 RY45_04185 ac8a6ee0048ac0bf292f22b2074bb2c7 415 SMART SM00490 260 341 2.3E-32 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_04185 ac8a6ee0048ac0bf292f22b2074bb2c7 415 Gene3D G3DSA:3.40.50.300 216 408 4.4E-46 T 14-10-2018 RY45_04185 ac8a6ee0048ac0bf292f22b2074bb2c7 415 SMART SM00487 23 224 8.8E-63 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_04185 ac8a6ee0048ac0bf292f22b2074bb2c7 415 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_04185 ac8a6ee0048ac0bf292f22b2074bb2c7 415 Pfam PF00270 DEAD/DEAH box helicase 28 194 2.1E-50 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_04185 ac8a6ee0048ac0bf292f22b2074bb2c7 415 SUPERFAMILY SSF52540 76 358 1.89E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04185 ac8a6ee0048ac0bf292f22b2074bb2c7 415 Pfam PF00271 Helicase conserved C-terminal domain 242 341 1.8E-26 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 SUPERFAMILY SSF55424 335 449 1.89E-33 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 448 6.8E-33 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 317 5.0E-67 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 8.4E-66 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 4 449 2.6E-215 T 14-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PIRSF PIRSF000350 1 445 4.0E-85 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 Gene3D G3DSA:3.30.390.30 337 449 1.2E-46 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 SUPERFAMILY SSF51905 5 370 2.59E-57 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 Gene3D G3DSA:3.50.50.60 143 260 1.8E-121 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 Gene3D G3DSA:3.50.50.60 5 317 1.8E-121 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 4.2E-27 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 4.2E-27 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 4.2E-27 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 4.2E-27 T 14-10-2018 RY45_00090 54e7d83b70b90ec7f99cc0d3501d5ef5 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 4.2E-27 T 14-10-2018 RY45_01230 99c97a578b9f6de796a345bbd6e93972 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 3.5E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_01230 99c97a578b9f6de796a345bbd6e93972 231 SMART SM00862 151 227 1.4E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_01230 99c97a578b9f6de796a345bbd6e93972 231 SUPERFAMILY SSF52172 1 125 5.55E-44 T 14-10-2018 IPR011006 CheY-like superfamily RY45_01230 99c97a578b9f6de796a345bbd6e93972 231 Gene3D G3DSA:1.10.10.10 128 231 2.2E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01230 99c97a578b9f6de796a345bbd6e93972 231 SUPERFAMILY SSF46894 128 228 8.22E-25 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_01230 99c97a578b9f6de796a345bbd6e93972 231 Pfam PF00072 Response regulator receiver domain 4 113 2.2E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_01230 99c97a578b9f6de796a345bbd6e93972 231 Gene3D G3DSA:3.40.50.2300 1 127 4.6E-41 T 14-10-2018 RY45_01230 99c97a578b9f6de796a345bbd6e93972 231 SMART SM00448 2 112 2.2E-46 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 SUPERFAMILY SSF47413 10 68 1.02E-18 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 57 1.1E-19 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 SMART SM00354 10 80 1.9E-33 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 Gene3D G3DSA:3.40.50.2300 170 340 5.9E-65 T 14-10-2018 RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 Gene3D G3DSA:1.10.260.40 7 67 1.8E-23 T 14-10-2018 RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 Gene3D G3DSA:3.40.50.2300 71 337 5.9E-65 T 14-10-2018 RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 71 337 1.5E-43 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 SUPERFAMILY SSF53822 70 344 9.59E-61 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_07530 4999ee9c12fc93950eeaaaa935abe0e9 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 14-10-2018 RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 166 7.8E-36 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 Hamap MF_00367 GTPase Era [era]. 5 296 35.973 T 14-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 Pfam PF07650 KH domain 208 284 9.7E-20 T 14-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 Pfam PF01926 50S ribosome-binding GTPase 10 124 1.8E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 SUPERFAMILY SSF52540 10 205 4.6E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 SUPERFAMILY SSF54814 181 296 4.25E-44 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 Gene3D G3DSA:3.30.300.20 185 299 5.5E-44 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 Gene3D G3DSA:3.40.50.300 2 183 3.1E-51 T 14-10-2018 RY45_04505 1e2cb1ed81a281d8a5b6f34a4cdfff96 299 TIGRFAM TIGR00436 era: GTP-binding protein Era 8 279 7.0E-114 T 14-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 19 105 6.7E-10 T 14-10-2018 IPR000014 PAS domain RY45_03625 d991a9107a3775b2d5a02491154d4296 519 SMART SM00283 257 518 5.3E-64 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 SUPERFAMILY SSF58104 240 518 6.8E-65 T 14-10-2018 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 355 382 2.3E-19 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 278 307 2.3E-19 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 413 2.3E-19 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 Pfam PF08447 PAS fold 29 113 9.4E-14 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 SUPERFAMILY SSF55785 19 113 2.44E-24 T 14-10-2018 IPR035965 PAS domain superfamily RY45_03625 d991a9107a3775b2d5a02491154d4296 519 Gene3D G3DSA:3.30.450.20 17 115 8.6E-23 T 14-10-2018 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 316 485 1.1E-40 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_03625 d991a9107a3775b2d5a02491154d4296 519 Gene3D G3DSA:1.10.287.950 191 518 2.1E-60 T 14-10-2018 RY45_21680 9790580c75b53584b80c451bc4e7d358 77 Gene3D G3DSA:1.10.1200.10 1 74 1.4E-14 T 14-10-2018 IPR036736 ACP-like superfamily RY45_21680 9790580c75b53584b80c451bc4e7d358 77 SUPERFAMILY SSF47336 2 72 1.83E-10 T 14-10-2018 IPR036736 ACP-like superfamily RY45_18820 86118a0312b163fba8ed1dcf6597d559 328 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 5 319 1.1E-158 T 14-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RY45_18820 86118a0312b163fba8ed1dcf6597d559 328 Gene3D G3DSA:1.20.120.1460 246 320 1.0E-23 T 14-10-2018 RY45_18820 86118a0312b163fba8ed1dcf6597d559 328 PIRSF PIRSF006621 1 322 4.9E-77 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_18820 86118a0312b163fba8ed1dcf6597d559 328 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 320 52.718 T 14-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RY45_18820 86118a0312b163fba8ed1dcf6597d559 328 SUPERFAMILY SSF51395 5 299 1.79E-79 T 14-10-2018 RY45_18820 86118a0312b163fba8ed1dcf6597d559 328 Gene3D G3DSA:3.20.20.70 2 243 1.3E-75 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_18820 86118a0312b163fba8ed1dcf6597d559 328 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 86 104 - T 14-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_18820 86118a0312b163fba8ed1dcf6597d559 328 Pfam PF01207 Dihydrouridine synthase (Dus) 8 308 2.7E-92 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RY45_04615 5dd29de606b67f32cea20b75fa11a384 243 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 222 3.2E-72 T 14-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RY45_04615 5dd29de606b67f32cea20b75fa11a384 243 SUPERFAMILY SSF53448 9 225 6.68E-62 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_04615 5dd29de606b67f32cea20b75fa11a384 243 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 225 1.5E-74 T 14-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RY45_04615 5dd29de606b67f32cea20b75fa11a384 243 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 101 108 - T 14-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RY45_04615 5dd29de606b67f32cea20b75fa11a384 243 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 224 43.774 T 14-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RY45_04615 5dd29de606b67f32cea20b75fa11a384 243 Gene3D G3DSA:3.90.550.10 5 231 1.3E-70 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_20360 8d437c235981d9cdbc492717385e8815 125 SUPERFAMILY SSF101801 43 118 4.45E-22 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_20360 8d437c235981d9cdbc492717385e8815 125 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 43 117 4.5E-29 T 14-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 RY45_20360 8d437c235981d9cdbc492717385e8815 125 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 47 116 1.4E-23 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) RY45_20360 8d437c235981d9cdbc492717385e8815 125 PRINTS PR00956 Flagellar motor switch protein FliN signature 45 61 3.9E-22 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RY45_20360 8d437c235981d9cdbc492717385e8815 125 PRINTS PR00956 Flagellar motor switch protein FliN signature 78 91 3.9E-22 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RY45_20360 8d437c235981d9cdbc492717385e8815 125 PRINTS PR00956 Flagellar motor switch protein FliN signature 62 78 3.9E-22 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RY45_20360 8d437c235981d9cdbc492717385e8815 125 PRINTS PR00956 Flagellar motor switch protein FliN signature 91 106 3.9E-22 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RY45_20360 8d437c235981d9cdbc492717385e8815 125 Gene3D G3DSA:2.30.330.10 33 120 3.6E-27 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_14780 ee7afaf982f40c91667e37c56b4bda04 666 SUPERFAMILY SSF64518 457 665 1.44E-19 T 14-10-2018 RY45_14780 ee7afaf982f40c91667e37c56b4bda04 666 PRINTS PR01005 Flagellar hook-associated protein signature 116 136 1.0E-9 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_14780 ee7afaf982f40c91667e37c56b4bda04 666 PRINTS PR01005 Flagellar hook-associated protein signature 149 173 1.0E-9 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_14780 ee7afaf982f40c91667e37c56b4bda04 666 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 1.0E-9 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_14780 ee7afaf982f40c91667e37c56b4bda04 666 PRINTS PR01005 Flagellar hook-associated protein signature 404 421 1.0E-9 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_14780 ee7afaf982f40c91667e37c56b4bda04 666 PRINTS PR01005 Flagellar hook-associated protein signature 207 225 1.0E-9 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_14780 ee7afaf982f40c91667e37c56b4bda04 666 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 607 663 1.4E-8 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14780 ee7afaf982f40c91667e37c56b4bda04 666 SUPERFAMILY SSF64518 104 429 1.02E-15 T 14-10-2018 RY45_05245 dc8b8ac1abe33a3e17dd0caa1fbd4620 447 Pfam PF00860 Permease family 33 406 3.1E-43 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RY45_05245 dc8b8ac1abe33a3e17dd0caa1fbd4620 447 PIRSF PIRSF005353 7 446 4.0E-172 T 14-10-2018 IPR026033 Purine permease PbuG-like RY45_06465 9734af8507478e96723caf6ff6adad09 446 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 6 306 22.965 T 14-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RY45_06465 9734af8507478e96723caf6ff6adad09 446 Pfam PF09179 TilS substrate binding domain 247 314 6.9E-22 T 14-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RY45_06465 9734af8507478e96723caf6ff6adad09 446 SUPERFAMILY SSF82829 233 317 1.2E-26 T 14-10-2018 RY45_06465 9734af8507478e96723caf6ff6adad09 446 Pfam PF01171 PP-loop family 22 199 9.2E-57 T 14-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 RY45_06465 9734af8507478e96723caf6ff6adad09 446 SUPERFAMILY SSF52402 18 233 9.71E-58 T 14-10-2018 RY45_06465 9734af8507478e96723caf6ff6adad09 446 Gene3D G3DSA:3.40.50.620 17 231 1.4E-66 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_06465 9734af8507478e96723caf6ff6adad09 446 Gene3D G3DSA:1.20.59.20 232 318 7.7E-28 T 14-10-2018 RY45_06465 9734af8507478e96723caf6ff6adad09 446 Pfam PF11734 TilS substrate C-terminal domain 364 435 1.9E-23 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RY45_06465 9734af8507478e96723caf6ff6adad09 446 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 371 411 1.5E-13 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RY45_06465 9734af8507478e96723caf6ff6adad09 446 SMART SM00977 364 436 5.2E-25 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RY45_06465 9734af8507478e96723caf6ff6adad09 446 SUPERFAMILY SSF56037 323 437 5.75E-29 T 14-10-2018 RY45_06465 9734af8507478e96723caf6ff6adad09 446 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 22 203 1.3E-50 T 14-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RY45_15000 92a6811b8317b67da0fd35bbddc0f95e 295 Pfam PF04321 RmlD substrate binding domain 1 292 1.9E-101 T 14-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 RY45_15000 92a6811b8317b67da0fd35bbddc0f95e 295 Gene3D G3DSA:3.40.50.720 3 279 8.8E-111 T 14-10-2018 RY45_15000 92a6811b8317b67da0fd35bbddc0f95e 295 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 3 291 2.9E-94 T 14-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 RY45_15000 92a6811b8317b67da0fd35bbddc0f95e 295 Gene3D G3DSA:3.90.25.10 161 286 8.8E-111 T 14-10-2018 RY45_15000 92a6811b8317b67da0fd35bbddc0f95e 295 SUPERFAMILY SSF51735 1 292 7.98E-98 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_10520 ef17467fa189e28412e77146ca2d4807 306 Gene3D G3DSA:3.40.710.10 18 304 1.6E-65 T 14-10-2018 RY45_10520 ef17467fa189e28412e77146ca2d4807 306 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 43 269 6.9E-60 T 14-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RY45_10520 ef17467fa189e28412e77146ca2d4807 306 SUPERFAMILY SSF56601 3 284 1.61E-59 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_10520 ef17467fa189e28412e77146ca2d4807 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 75 86 5.5E-14 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_10520 ef17467fa189e28412e77146ca2d4807 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 125 142 5.5E-14 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_10520 ef17467fa189e28412e77146ca2d4807 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 152 165 5.5E-14 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 11 29 - T 14-10-2018 RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 SUPERFAMILY SSF53822 66 318 1.32E-53 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 SMART SM00354 8 78 2.8E-28 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 Gene3D G3DSA:3.40.50.2300 70 311 3.3E-62 T 14-10-2018 RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 SUPERFAMILY SSF47413 7 65 5.38E-15 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 Gene3D G3DSA:1.10.260.40 1 64 6.3E-19 T 14-10-2018 RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 Gene3D G3DSA:3.40.50.2300 164 295 3.3E-62 T 14-10-2018 RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 55 1.5E-18 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_01745 a9fb165bca2730c84fe5678e0a3eca88 335 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 67 311 2.2E-23 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_18910 bb48878b7a4c26fece933d12657d94a3 205 Gene3D G3DSA:3.30.700.10 9 141 3.9E-12 T 14-10-2018 RY45_18910 bb48878b7a4c26fece933d12657d94a3 205 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 29 3.0E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_18910 bb48878b7a4c26fece933d12657d94a3 205 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 29 2.4E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_18910 bb48878b7a4c26fece933d12657d94a3 205 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_18910 bb48878b7a4c26fece933d12657d94a3 205 SUPERFAMILY SSF54523 9 98 1.02E-13 T 14-10-2018 RY45_17255 1801a43365399ca3353d8e3aa7d318b7 151 Pfam PF00364 Biotin-requiring enzyme 78 150 4.6E-26 T 14-10-2018 IPR000089 Biotin/lipoyl attachment RY45_17255 1801a43365399ca3353d8e3aa7d318b7 151 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 80 93 2.5E-16 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RY45_17255 1801a43365399ca3353d8e3aa7d318b7 151 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 112 125 2.5E-16 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RY45_17255 1801a43365399ca3353d8e3aa7d318b7 151 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 97 111 2.5E-16 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RY45_17255 1801a43365399ca3353d8e3aa7d318b7 151 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 107 124 - T 14-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RY45_17255 1801a43365399ca3353d8e3aa7d318b7 151 Gene3D G3DSA:2.40.50.100 73 151 9.1E-30 T 14-10-2018 RY45_17255 1801a43365399ca3353d8e3aa7d318b7 151 SUPERFAMILY SSF51230 76 151 3.93E-25 T 14-10-2018 IPR011053 Single hybrid motif RY45_17255 1801a43365399ca3353d8e3aa7d318b7 151 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 151 5.4E-60 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RY45_03310 f90586853e268b810a35a6591cab8f45 119 SUPERFAMILY SSF54523 36 117 1.33E-25 T 14-10-2018 RY45_03310 f90586853e268b810a35a6591cab8f45 119 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 4 24 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03310 f90586853e268b810a35a6591cab8f45 119 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 26 6.2E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03310 f90586853e268b810a35a6591cab8f45 119 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 25 1.6E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03310 f90586853e268b810a35a6591cab8f45 119 Pfam PF02501 Type II secretion system (T2SS), protein I 39 117 4.5E-26 T 14-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 RY45_03310 f90586853e268b810a35a6591cab8f45 119 Gene3D G3DSA:3.30.1300.30 31 119 6.7E-32 T 14-10-2018 RY45_03310 f90586853e268b810a35a6591cab8f45 119 TIGRFAM TIGR01707 gspI: type II secretion system protein I 5 103 1.4E-29 T 14-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 RY45_08300 8acd6487adaf83b606f726e8acb073b2 266 SUPERFAMILY SSF100950 1 263 2.09E-105 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_08300 8acd6487adaf83b606f726e8acb073b2 266 Gene3D G3DSA:3.40.50.1360 1 266 6.2E-115 T 14-10-2018 RY45_08300 8acd6487adaf83b606f726e8acb073b2 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 4.0E-138 T 14-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 RY45_08300 8acd6487adaf83b606f726e8acb073b2 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 17 227 3.9E-19 T 14-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 RY45_08300 8acd6487adaf83b606f726e8acb073b2 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 14-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 RY45_08300 8acd6487adaf83b606f726e8acb073b2 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.676 T 14-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 RY45_06440 faaba374f202e65e8ca013f670d022b0 426 PIRSF PIRSF006060 1 415 9.5E-58 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_06440 faaba374f202e65e8ca013f670d022b0 426 Gene3D G3DSA:1.20.1740.10 3 423 1.9E-60 T 14-10-2018 RY45_06440 faaba374f202e65e8ca013f670d022b0 426 Pfam PF13520 Amino acid permease 8 366 1.7E-42 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_05505 794ae948a23c730de5ee80d1d067b7a2 212 Gene3D G3DSA:3.10.50.40 7 153 1.1E-53 T 14-10-2018 RY45_05505 794ae948a23c730de5ee80d1d067b7a2 212 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 110 8.9E-9 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RY45_05505 794ae948a23c730de5ee80d1d067b7a2 212 Gene3D G3DSA:2.40.10.330 71 120 1.1E-53 T 14-10-2018 RY45_05505 794ae948a23c730de5ee80d1d067b7a2 212 SUPERFAMILY SSF54534 3 139 1.12E-32 T 14-10-2018 RY45_07365 589960bf83cac8f958acb6873db9fedc 176 SUPERFAMILY SSF52833 43 173 9.78E-37 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_07365 589960bf83cac8f958acb6873db9fedc 176 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 9 173 1.2E-60 T 14-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 RY45_07365 589960bf83cac8f958acb6873db9fedc 176 Pfam PF08534 Redoxin 38 163 2.6E-21 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 RY45_07365 589960bf83cac8f958acb6873db9fedc 176 ProSitePatterns PS00194 Thioredoxin family active site. 68 86 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RY45_07365 589960bf83cac8f958acb6873db9fedc 176 Gene3D G3DSA:3.40.30.10 24 176 1.2E-41 T 14-10-2018 RY45_04225 1970476a0bbbd7c6df09bedb85983dbb 1016 Gene3D G3DSA:1.10.760.10 585 689 7.6E-90 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_04225 1970476a0bbbd7c6df09bedb85983dbb 1016 ProSitePatterns PS00018 EF-hand calcium-binding domain. 165 177 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site RY45_04225 1970476a0bbbd7c6df09bedb85983dbb 1016 Pfam PF03150 Di-haem cytochrome c peroxidase 451 598 8.5E-52 T 14-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 RY45_04225 1970476a0bbbd7c6df09bedb85983dbb 1016 Gene3D G3DSA:2.60.40.1080 776 868 2.8E-10 T 14-10-2018 RY45_04225 1970476a0bbbd7c6df09bedb85983dbb 1016 Gene3D G3DSA:1.10.760.10 442 584 7.6E-90 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_04225 1970476a0bbbd7c6df09bedb85983dbb 1016 SUPERFAMILY SSF46626 584 750 6.12E-26 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_04225 1970476a0bbbd7c6df09bedb85983dbb 1016 SUPERFAMILY SSF46626 437 585 7.12E-50 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_00215 bba11fb09737b2460cc40d4f453a2b7b 287 Gene3D G3DSA:3.30.70.270 124 286 6.0E-26 T 14-10-2018 RY45_00215 bba11fb09737b2460cc40d4f453a2b7b 287 Gene3D G3DSA:3.30.450.20 19 123 7.6E-14 T 14-10-2018 RY45_00215 bba11fb09737b2460cc40d4f453a2b7b 287 SUPERFAMILY SSF55785 45 121 1.12E-8 T 14-10-2018 IPR035965 PAS domain superfamily RY45_00215 bba11fb09737b2460cc40d4f453a2b7b 287 SMART SM00267 124 287 2.4E-8 T 14-10-2018 IPR000160 GGDEF domain RY45_00215 bba11fb09737b2460cc40d4f453a2b7b 287 SUPERFAMILY SSF55073 140 282 6.12E-21 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_00215 bba11fb09737b2460cc40d4f453a2b7b 287 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 134 267 8.9E-17 T 14-10-2018 IPR000160 GGDEF domain RY45_00215 bba11fb09737b2460cc40d4f453a2b7b 287 Pfam PF00990 Diguanylate cyclase, GGDEF domain 137 282 6.1E-19 T 14-10-2018 IPR000160 GGDEF domain RY45_00215 bba11fb09737b2460cc40d4f453a2b7b 287 Pfam PF08447 PAS fold 45 120 4.8E-11 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_10315 1da2b46d269500057bb44ac1a2697e22 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 8 126 9.6E-42 T 14-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10315 1da2b46d269500057bb44ac1a2697e22 129 PIRSF PIRSF000178 2 129 3.2E-33 T 14-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10315 1da2b46d269500057bb44ac1a2697e22 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 10 34 - T 14-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10315 1da2b46d269500057bb44ac1a2697e22 129 Gene3D G3DSA:1.20.1300.10 3 129 2.6E-45 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10315 1da2b46d269500057bb44ac1a2697e22 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 1.9E-31 T 14-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10315 1da2b46d269500057bb44ac1a2697e22 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 85 98 - T 14-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10315 1da2b46d269500057bb44ac1a2697e22 129 SUPERFAMILY SSF81343 5 129 3.05E-36 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_09035 b244239111461dab0fa0954ab85a4335 451 Gene3D G3DSA:1.20.1250.20 240 445 7.1E-61 T 14-10-2018 RY45_09035 b244239111461dab0fa0954ab85a4335 451 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 14-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 RY45_09035 b244239111461dab0fa0954ab85a4335 451 SUPERFAMILY SSF103473 10 436 7.06E-86 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_09035 b244239111461dab0fa0954ab85a4335 451 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 439 2.8E-240 T 14-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 RY45_09035 b244239111461dab0fa0954ab85a4335 451 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 6.2E-152 T 14-10-2018 RY45_09035 b244239111461dab0fa0954ab85a4335 451 Pfam PF07690 Major Facilitator Superfamily 34 400 4.9E-51 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_09035 b244239111461dab0fa0954ab85a4335 451 Gene3D G3DSA:1.20.1250.20 19 226 1.6E-57 T 14-10-2018 RY45_09035 b244239111461dab0fa0954ab85a4335 451 PIRSF PIRSF002808 5 451 4.7E-173 T 14-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RY45_04780 d06b2b6b95858015b1d13052b98c142c 439 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 371 1.5E-144 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 RY45_04780 d06b2b6b95858015b1d13052b98c142c 439 PIRSF PIRSF004539 1 439 1.9E-165 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 RY45_04780 d06b2b6b95858015b1d13052b98c142c 439 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 439 5.4E-173 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 RY45_19955 37aad841085663c2f008e1b0814f318d 205 PIRSF PIRSF006324 1 203 4.2E-49 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_19955 37aad841085663c2f008e1b0814f318d 205 Pfam PF01810 LysE type translocator 13 200 1.1E-35 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_03620 c136bb8dc66086dad00d62c13f0f635a 438 Gene3D G3DSA:3.60.10.10 167 434 9.5E-58 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_03620 c136bb8dc66086dad00d62c13f0f635a 438 SUPERFAMILY SSF56219 173 436 2.36E-58 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_03620 c136bb8dc66086dad00d62c13f0f635a 438 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 177 429 1.3E-11 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RY45_18835 2a4d4c8bf4f31d2ffda1f36473f5a734 160 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 149 2.1E-52 T 14-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 RY45_18835 2a4d4c8bf4f31d2ffda1f36473f5a734 160 Gene3D G3DSA:1.20.120.1370 1 157 3.3E-49 T 14-10-2018 IPR038309 Rsd/AlgQ superfamily RY45_18835 2a4d4c8bf4f31d2ffda1f36473f5a734 160 PIRSF PIRSF016548 1 159 2.6E-47 T 14-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 RY45_05200 f4d20b442a00b393fa1c18efca4c0894 273 Gene3D G3DSA:3.60.21.10 1 271 2.0E-75 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_05200 f4d20b442a00b393fa1c18efca4c0894 273 SUPERFAMILY SSF56300 4 258 4.95E-60 T 14-10-2018 RY45_05200 f4d20b442a00b393fa1c18efca4c0894 273 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 266 3.6E-111 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 RY45_05200 f4d20b442a00b393fa1c18efca4c0894 273 Pfam PF00149 Calcineurin-like phosphoesterase 5 153 2.1E-12 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RY45_05200 f4d20b442a00b393fa1c18efca4c0894 273 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 47.204 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 RY45_05200 f4d20b442a00b393fa1c18efca4c0894 273 PIRSF PIRSF000903 1 273 3.5E-116 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 RY45_22005 c795ddd55bb5b34ec9d601074a583649 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 8 406 6.9E-173 T 14-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RY45_22005 c795ddd55bb5b34ec9d601074a583649 406 Gene3D G3DSA:3.40.640.10 37 297 7.8E-174 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_22005 c795ddd55bb5b34ec9d601074a583649 406 SUPERFAMILY SSF53383 6 402 2.26E-128 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_22005 c795ddd55bb5b34ec9d601074a583649 406 Pfam PF00266 Aminotransferase class-V 26 395 6.8E-151 T 14-10-2018 IPR000192 Aminotransferase class V domain RY45_22005 c795ddd55bb5b34ec9d601074a583649 406 PIRSF PIRSF005572 23 404 2.0E-53 T 14-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RY45_22005 c795ddd55bb5b34ec9d601074a583649 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 218 237 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RY45_22005 c795ddd55bb5b34ec9d601074a583649 406 Gene3D G3DSA:3.90.1150.10 10 399 7.8E-174 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_02390 cc1bce8cb41139c6416c5b96f3e5d047 376 SUPERFAMILY SSF109604 159 353 5.34E-33 T 14-10-2018 RY45_02390 cc1bce8cb41139c6416c5b96f3e5d047 376 Gene3D G3DSA:3.40.50.2300 5 142 4.8E-35 T 14-10-2018 RY45_02390 cc1bce8cb41139c6416c5b96f3e5d047 376 Gene3D G3DSA:1.10.3210.10 151 368 6.3E-78 T 14-10-2018 RY45_02390 cc1bce8cb41139c6416c5b96f3e5d047 376 SMART SM00448 11 124 6.0E-33 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_02390 cc1bce8cb41139c6416c5b96f3e5d047 376 SMART SM00471 173 324 7.4E-10 T 14-10-2018 IPR003607 HD/PDEase domain RY45_02390 cc1bce8cb41139c6416c5b96f3e5d047 376 SUPERFAMILY SSF52172 10 156 4.27E-35 T 14-10-2018 IPR011006 CheY-like superfamily RY45_02390 cc1bce8cb41139c6416c5b96f3e5d047 376 Pfam PF01966 HD domain 178 314 2.3E-18 T 14-10-2018 IPR006674 HD domain RY45_02390 cc1bce8cb41139c6416c5b96f3e5d047 376 Pfam PF00072 Response regulator receiver domain 14 124 1.2E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 Gene3D G3DSA:3.30.450.20 55 268 1.6E-61 T 14-10-2018 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 408 591 8.6E-41 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 Pfam PF00672 HAMP domain 297 344 2.8E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 Pfam PF02743 Cache domain 54 256 6.1E-29 T 14-10-2018 IPR033479 Double Cache domain 1 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 SUPERFAMILY SSF103190 74 174 2.2E-16 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 Gene3D G3DSA:1.10.287.950 296 625 2.5E-72 T 14-10-2018 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 SUPERFAMILY SSF58104 316 625 1.57E-77 T 14-10-2018 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 SMART SM00304 294 348 9.3E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 SMART SM00283 359 624 2.9E-67 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_16540 dd8ea7b7163c42dadf4fdcc5b4acfcd8 625 Gene3D G3DSA:3.30.450.20 64 168 1.6E-61 T 14-10-2018 RY45_20390 bf65e549a0b86016dc494fbedc17bbe9 192 Pfam PF04972 BON domain 124 190 3.6E-18 T 14-10-2018 IPR007055 BON domain RY45_20390 bf65e549a0b86016dc494fbedc17bbe9 192 Pfam PF04972 BON domain 46 114 3.9E-12 T 14-10-2018 IPR007055 BON domain RY45_20390 bf65e549a0b86016dc494fbedc17bbe9 192 SMART SM00749 129 192 8.3E-6 T 14-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria RY45_20390 bf65e549a0b86016dc494fbedc17bbe9 192 SMART SM00749 51 114 2.0 T 14-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria RY45_04205 24851ebcda3a409bd4aa4a976f0bb1fc 289 Gene3D G3DSA:1.10.10.10 2 88 6.5E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04205 24851ebcda3a409bd4aa4a976f0bb1fc 289 Gene3D G3DSA:3.40.190.290 91 285 6.8E-41 T 14-10-2018 RY45_04205 24851ebcda3a409bd4aa4a976f0bb1fc 289 SUPERFAMILY SSF53850 90 286 5.43E-38 T 14-10-2018 RY45_04205 24851ebcda3a409bd4aa4a976f0bb1fc 289 Pfam PF03466 LysR substrate binding domain 88 285 1.4E-35 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_04205 24851ebcda3a409bd4aa4a976f0bb1fc 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.6E-12 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04205 24851ebcda3a409bd4aa4a976f0bb1fc 289 SUPERFAMILY SSF46785 1 111 3.89E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 27 164 23.488 T 14-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 39 50 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 Gene3D G3DSA:3.30.70.20 34 86 6.4E-9 T 14-10-2018 RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 Gene3D G3DSA:3.30.70.20 99 161 2.5E-9 T 14-10-2018 RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 SUPERFAMILY SSF54862 23 160 5.44E-18 T 14-10-2018 RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 10 158 2.6E-41 T 14-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 Pfam PF12838 4Fe-4S dicluster domain 112 156 7.1E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14705 84d0410ec9846cc254ede9ff5c6dc063 169 Pfam PF13237 4Fe-4S dicluster domain 37 81 5.7E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_03805 f2aa6cc66eb948a439267108373878af 224 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 5 220 2.6E-103 T 14-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 RY45_03805 f2aa6cc66eb948a439267108373878af 224 Gene3D G3DSA:3.40.600.10 1 222 3.6E-53 T 14-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 RY45_03805 f2aa6cc66eb948a439267108373878af 224 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 224 151.301 T 14-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 RY45_03805 f2aa6cc66eb948a439267108373878af 224 Pfam PF02976 DNA mismatch repair enzyme MutH 53 151 2.1E-34 T 14-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 RY45_03805 f2aa6cc66eb948a439267108373878af 224 SMART SM00927 53 151 7.4E-66 T 14-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 RY45_03805 f2aa6cc66eb948a439267108373878af 224 SUPERFAMILY SSF52980 2 220 5.9E-81 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RY45_08230 bd3b6b497463bfaab2ef544941e44ed7 621 Gene3D G3DSA:2.70.240.20 174 592 2.1E-175 T 14-10-2018 RY45_08230 bd3b6b497463bfaab2ef544941e44ed7 621 Pfam PF07968 Leukocidin/Hemolysin toxin family 222 484 1.8E-75 T 14-10-2018 IPR016183 Leukocidin/Hemolysin toxin GO:0005576|GO:0051715 RY45_08230 bd3b6b497463bfaab2ef544941e44ed7 621 Pfam PF12563 Hemolytic toxin N terminal 9 196 7.7E-84 T 14-10-2018 IPR022220 Hemolytic toxin, N-terminal RY45_08230 bd3b6b497463bfaab2ef544941e44ed7 621 Gene3D G3DSA:3.30.70.2270 308 355 2.1E-175 T 14-10-2018 RY45_08230 bd3b6b497463bfaab2ef544941e44ed7 621 SMART SM00458 491 607 1.7E-16 T 14-10-2018 IPR000772 Ricin B, lectin domain RY45_08230 bd3b6b497463bfaab2ef544941e44ed7 621 SUPERFAMILY SSF56959 285 484 1.96E-9 T 14-10-2018 IPR036435 Leukocidin/porin MspA superfamily RY45_08230 bd3b6b497463bfaab2ef544941e44ed7 621 Gene3D G3DSA:3.30.110.130 52 137 3.1E-28 T 14-10-2018 RY45_08230 bd3b6b497463bfaab2ef544941e44ed7 621 SUPERFAMILY SSF50370 493 600 2.32E-13 T 14-10-2018 IPR035992 Ricin B-like lectins RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 15 607 1.4E-186 T 14-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 Gene3D G3DSA:3.40.1750.10 184 496 5.5E-159 T 14-10-2018 RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 Gene3D G3DSA:3.90.226.10 313 539 5.5E-159 T 14-10-2018 RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 347 538 6.0E-52 T 14-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 Pfam PF01343 Peptidase family S49 390 541 3.8E-45 T 14-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 Pfam PF01343 Peptidase family S49 136 288 4.6E-33 T 14-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 Gene3D G3DSA:3.90.226.10 92 312 5.5E-159 T 14-10-2018 RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 SUPERFAMILY SSF52096 312 526 1.38E-41 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 SUPERFAMILY SSF52096 30 284 5.47E-24 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_17315 067ffcc98e427275ae5b8858d344eafd 614 PIRSF PIRSF001217 8 614 4.6E-203 T 14-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 RY45_00035 45f3640cb9445f608fdc94ff8e7b91be 137 Pfam PF00011 Hsp20/alpha crystallin family 44 136 4.5E-18 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain RY45_00035 45f3640cb9445f608fdc94ff8e7b91be 137 SUPERFAMILY SSF49764 31 136 1.57E-21 T 14-10-2018 IPR008978 HSP20-like chaperone RY45_00035 45f3640cb9445f608fdc94ff8e7b91be 137 Gene3D G3DSA:2.60.40.790 33 136 1.7E-20 T 14-10-2018 IPR008978 HSP20-like chaperone RY45_20665 fae5d7b373a6184d189b04d4153f6f5e 561 Pfam PF05228 CHASE4 domain 57 213 7.1E-26 T 14-10-2018 IPR007892 CHASE4 RY45_20665 fae5d7b373a6184d189b04d4153f6f5e 561 Gene3D G3DSA:3.30.70.270 361 529 1.4E-41 T 14-10-2018 RY45_20665 fae5d7b373a6184d189b04d4153f6f5e 561 Pfam PF00990 Diguanylate cyclase, GGDEF domain 367 524 2.0E-30 T 14-10-2018 IPR000160 GGDEF domain RY45_20665 fae5d7b373a6184d189b04d4153f6f5e 561 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 364 525 7.4E-33 T 14-10-2018 IPR000160 GGDEF domain RY45_20665 fae5d7b373a6184d189b04d4153f6f5e 561 SUPERFAMILY SSF55073 372 529 1.26E-35 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_20665 fae5d7b373a6184d189b04d4153f6f5e 561 SMART SM00267 356 528 2.3E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_21295 46962e1735425767de9c859ca779d818 170 PRINTS PR01171 Bacterial lipocalin signature 115 123 1.0E-37 T 14-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RY45_21295 46962e1735425767de9c859ca779d818 170 PRINTS PR01171 Bacterial lipocalin signature 130 141 1.0E-37 T 14-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RY45_21295 46962e1735425767de9c859ca779d818 170 PRINTS PR01171 Bacterial lipocalin signature 46 62 1.0E-37 T 14-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RY45_21295 46962e1735425767de9c859ca779d818 170 PRINTS PR01171 Bacterial lipocalin signature 157 167 1.0E-37 T 14-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RY45_21295 46962e1735425767de9c859ca779d818 170 PRINTS PR01171 Bacterial lipocalin signature 29 43 1.0E-37 T 14-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RY45_21295 46962e1735425767de9c859ca779d818 170 PRINTS PR01171 Bacterial lipocalin signature 65 74 1.0E-37 T 14-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RY45_21295 46962e1735425767de9c859ca779d818 170 PRINTS PR01171 Bacterial lipocalin signature 98 112 1.0E-37 T 14-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RY45_21295 46962e1735425767de9c859ca779d818 170 Gene3D G3DSA:2.40.128.20 17 170 1.8E-51 T 14-10-2018 IPR012674 Calycin RY45_21295 46962e1735425767de9c859ca779d818 170 SUPERFAMILY SSF50814 5 169 1.28E-49 T 14-10-2018 IPR012674 Calycin RY45_21295 46962e1735425767de9c859ca779d818 170 PIRSF PIRSF036893 1 170 1.6E-45 T 14-10-2018 IPR022271 Lipocalin, ApoD type RY45_21295 46962e1735425767de9c859ca779d818 170 ProSitePatterns PS00213 Lipocalin signature. 28 41 - T 14-10-2018 IPR022272 Lipocalin family conserved site RY45_21295 46962e1735425767de9c859ca779d818 170 Pfam PF08212 Lipocalin-like domain 30 168 1.3E-44 T 14-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 800 1.8E-285 T 14-10-2018 RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 Gene3D G3DSA:1.10.486.10 448 655 7.7E-186 T 14-10-2018 RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 SUPERFAMILY SSF52540 1 344 7.96E-110 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 Gene3D G3DSA:3.40.50.10930 4 308 7.2E-114 T 14-10-2018 RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 SUPERFAMILY SSF52540 358 804 5.74E-99 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 PIRSF PIRSF000980 1 1116 0.0 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1079 0.0 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 SUPERFAMILY SSF52980 819 1112 2.36E-76 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 Gene3D G3DSA:1.10.10.990 862 931 5.1E-18 T 14-10-2018 RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 Gene3D G3DSA:1.10.10.160 79 197 7.2E-114 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 Gene3D G3DSA:3.40.50.300 332 802 7.7E-186 T 14-10-2018 RY45_20780 c8a4a7b395be644747b139efe570f1ef 1116 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1115 20.859 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 RY45_11405 f3f21e4e4e98f736a59e504cedb75b5a 212 Pfam PF04352 ProQ/FINO family 8 115 1.3E-40 T 14-10-2018 IPR016103 ProQ/FinO domain RY45_11405 f3f21e4e4e98f736a59e504cedb75b5a 212 SUPERFAMILY SSF48657 2 109 3.92E-35 T 14-10-2018 IPR036442 ProQ/FinO domain superfamily RY45_11405 f3f21e4e4e98f736a59e504cedb75b5a 212 Gene3D G3DSA:1.10.1710.10 1 108 2.9E-21 T 14-10-2018 IPR036442 ProQ/FinO domain superfamily RY45_11405 f3f21e4e4e98f736a59e504cedb75b5a 212 Pfam PF17516 ProQ C-terminal domain 162 211 2.9E-22 T 14-10-2018 IPR035236 RNA chaperone ProQ, C-terminal RY45_11405 f3f21e4e4e98f736a59e504cedb75b5a 212 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 212 27.362 T 14-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 RY45_11405 f3f21e4e4e98f736a59e504cedb75b5a 212 SMART SM00945 5 119 1.5E-59 T 14-10-2018 IPR016103 ProQ/FinO domain RY45_08020 7933bb44f20d4b4122c83aba79474520 540 SMART SM00283 278 539 8.9E-68 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08020 7933bb44f20d4b4122c83aba79474520 540 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 352 506 3.6E-39 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08020 7933bb44f20d4b4122c83aba79474520 540 Gene3D G3DSA:1.10.287.950 211 540 5.2E-72 T 14-10-2018 RY45_08020 7933bb44f20d4b4122c83aba79474520 540 SUPERFAMILY SSF58104 233 540 1.7E-70 T 14-10-2018 RY45_08020 7933bb44f20d4b4122c83aba79474520 540 Pfam PF00672 HAMP domain 212 258 3.6E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_08020 7933bb44f20d4b4122c83aba79474520 540 SMART SM00304 211 263 5.8E-12 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_08020 7933bb44f20d4b4122c83aba79474520 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 292 321 8.2E-8 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_08020 7933bb44f20d4b4122c83aba79474520 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 405 434 8.2E-8 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_20045 3155c21ed2bc15e408742bda8875a691 290 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 21 127 6.2E-35 T 14-10-2018 IPR010627 Peptidase A24A, N-terminal RY45_20045 3155c21ed2bc15e408742bda8875a691 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 226 6.4E-31 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial RY45_20045 3155c21ed2bc15e408742bda8875a691 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 164 6.4E-31 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial RY45_20045 3155c21ed2bc15e408742bda8875a691 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 227 242 6.4E-31 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial RY45_20045 3155c21ed2bc15e408742bda8875a691 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 204 214 6.4E-31 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial RY45_20045 3155c21ed2bc15e408742bda8875a691 290 Pfam PF01478 Type IV leader peptidase family 139 247 1.1E-28 T 14-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RY45_21690 f8430025ca0d152dcd2825fdd238ef1f 231 Pfam PF02348 Cytidylyltransferase 3 135 2.4E-31 T 14-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 RY45_21690 f8430025ca0d152dcd2825fdd238ef1f 231 Gene3D G3DSA:3.90.550.10 2 225 6.1E-61 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_21690 f8430025ca0d152dcd2825fdd238ef1f 231 SUPERFAMILY SSF53448 3 224 1.13E-56 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_21690 f8430025ca0d152dcd2825fdd238ef1f 231 TIGRFAM TIGR03584 PseF: pseudaminic acid cytidylyltransferase 3 224 6.2E-101 T 14-10-2018 IPR020039 Pseudaminic acid cytidylyltransferase KEGG: 00520+2.7.7.81|MetaCyc: PWY-6143 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 510 575 4.0E-12 T 14-10-2018 IPR007280 Peptidase, C-terminal, archaeal/bacterial RY45_04760 065318c25d63bb53e034d21b28b56ace 589 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 403 419 1.4E-27 T 14-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 341 352 1.4E-27 T 14-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 286 306 1.4E-27 T 14-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 320 336 1.4E-27 T 14-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 49 97 2.6E-12 T 14-10-2018 IPR011096 FTP domain RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Gene3D G3DSA:2.60.120.380 488 589 7.1E-41 T 14-10-2018 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Gene3D G3DSA:3.10.450.490 20 104 1.3E-7 T 14-10-2018 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Gene3D G3DSA:3.10.170.10 184 333 1.2E-64 T 14-10-2018 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 194 329 4.9E-37 T 14-10-2018 IPR013856 Peptidase M4 domain GO:0004222 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Gene3D G3DSA:3.10.450.40 105 183 6.0E-21 T 14-10-2018 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 SUPERFAMILY SSF55486 185 478 9.16E-90 T 14-10-2018 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Gene3D G3DSA:1.10.390.10 334 484 1.9E-50 T 14-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 332 476 1.5E-36 T 14-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 RY45_04760 065318c25d63bb53e034d21b28b56ace 589 Pfam PF03413 Peptidase propeptide and YPEB domain 113 178 5.1E-6 T 14-10-2018 IPR025711 PepSY domain RY45_01595 ee6dcbf851663bcbeaac5458fec023e7 167 SUPERFAMILY SSF52255 4 164 9.55E-60 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RY45_01595 ee6dcbf851663bcbeaac5458fec023e7 167 PIRSF PIRSF001338 1 166 1.7E-61 T 14-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 RY45_01595 ee6dcbf851663bcbeaac5458fec023e7 167 SMART SM01001 4 155 1.5E-88 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RY45_01595 ee6dcbf851663bcbeaac5458fec023e7 167 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 6 162 1.4E-58 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RY45_01595 ee6dcbf851663bcbeaac5458fec023e7 167 Gene3D G3DSA:3.40.50.7700 1 166 2.2E-65 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RY45_01595 ee6dcbf851663bcbeaac5458fec023e7 167 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 6 159 30.114 T 14-10-2018 IPR033747 Class I PurE RY45_01595 ee6dcbf851663bcbeaac5458fec023e7 167 Pfam PF00731 AIR carboxylase 6 153 1.5E-57 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RY45_00325 26bfcdd3c8fe67e1de7fc3cff6a34c0d 243 Pfam PF00072 Response regulator receiver domain 5 113 2.5E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00325 26bfcdd3c8fe67e1de7fc3cff6a34c0d 243 Pfam PF04397 LytTr DNA-binding domain 145 241 4.7E-31 T 14-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RY45_00325 26bfcdd3c8fe67e1de7fc3cff6a34c0d 243 SMART SM00448 2 113 2.3E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00325 26bfcdd3c8fe67e1de7fc3cff6a34c0d 243 SMART SM00850 144 242 2.1E-37 T 14-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RY45_00325 26bfcdd3c8fe67e1de7fc3cff6a34c0d 243 SUPERFAMILY SSF52172 1 118 1.85E-27 T 14-10-2018 IPR011006 CheY-like superfamily RY45_00325 26bfcdd3c8fe67e1de7fc3cff6a34c0d 243 Gene3D G3DSA:2.40.50.40 136 204 2.4E-21 T 14-10-2018 RY45_00325 26bfcdd3c8fe67e1de7fc3cff6a34c0d 243 Gene3D G3DSA:3.40.50.2300 1 128 6.0E-31 T 14-10-2018 RY45_01425 b6bf50a6cfaed6b88a81e13245dd2835 65 Pfam PF14001 YdfZ protein 2 65 4.5E-34 T 14-10-2018 IPR017704 Putative selenium-binding protein YdfZ RY45_01425 b6bf50a6cfaed6b88a81e13245dd2835 65 TIGRFAM TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ 1 65 1.9E-37 T 14-10-2018 IPR017704 Putative selenium-binding protein YdfZ RY45_11110 2b2041c6c442fcc3137876510c9c4581 134 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 20 114 2.0E-32 T 14-10-2018 IPR020358 Uncharacterised protein family Y4oB RY45_11110 2b2041c6c442fcc3137876510c9c4581 134 Pfam PF09722 Protein of unknown function (DUF2384) 79 132 1.1E-5 T 14-10-2018 IPR024467 Domain of unknown function DUF2384 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 Pfam PF13176 Tetratricopeptide repeat 188 210 0.0039 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 Gene3D G3DSA:1.25.40.10 216 455 1.5E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SUPERFAMILY SSF48452 265 380 1.52E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SUPERFAMILY SSF48452 182 294 5.42E-12 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 Pfam PF00990 Diguanylate cyclase, GGDEF domain 458 615 1.4E-43 T 14-10-2018 IPR000160 GGDEF domain RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SUPERFAMILY SSF48452 80 211 8.3E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SMART SM00267 447 619 1.2E-52 T 14-10-2018 IPR000160 GGDEF domain RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SMART SM00028 225 258 26.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SMART SM00028 347 380 95.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SMART SM00028 265 298 360.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SMART SM00028 145 178 290.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SMART SM00028 105 138 1.9 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SMART SM00028 185 217 98.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 Gene3D G3DSA:3.30.70.270 456 619 2.5E-55 T 14-10-2018 RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 456 617 1.6E-51 T 14-10-2018 IPR000160 GGDEF domain RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 SUPERFAMILY SSF55073 463 617 8.63E-47 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_04100 b96e169a4aed6684f194ef367bdf1ff7 620 Gene3D G3DSA:1.25.40.10 87 215 3.4E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_08280 99a2bc805a503c210f9cc44dc8a1fc99 246 Pfam PF01709 Transcriptional regulator 5 235 2.4E-96 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_08280 99a2bc805a503c210f9cc44dc8a1fc99 246 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 236 5.3E-101 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_08280 99a2bc805a503c210f9cc44dc8a1fc99 246 Gene3D G3DSA:3.30.70.980 130 204 2.1E-60 T 14-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_08280 99a2bc805a503c210f9cc44dc8a1fc99 246 SUPERFAMILY SSF75625 3 244 2.09E-96 T 14-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_08280 99a2bc805a503c210f9cc44dc8a1fc99 246 Gene3D G3DSA:3.30.70.980 85 235 2.1E-60 T 14-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_08280 99a2bc805a503c210f9cc44dc8a1fc99 246 Gene3D G3DSA:1.10.10.200 1 80 3.5E-33 T 14-10-2018 IPR017856 Integrase-like, N-terminal RY45_08280 99a2bc805a503c210f9cc44dc8a1fc99 246 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 36.321 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_10830 3ef917bcf043f8ec44a75f786e65d0ac 110 SUPERFAMILY SSF103481 10 107 7.85E-8 T 14-10-2018 RY45_10830 3ef917bcf043f8ec44a75f786e65d0ac 110 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 4 108 6.0E-40 T 14-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RY45_10830 3ef917bcf043f8ec44a75f786e65d0ac 110 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 4 108 24.919 T 14-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RY45_14235 ee50a509194764145a9e1d8e19bf0f6c 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 2.2E-30 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_14235 ee50a509194764145a9e1d8e19bf0f6c 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 215 2.9E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_14235 ee50a509194764145a9e1d8e19bf0f6c 225 SUPERFAMILY SSF161098 13 201 2.49E-46 T 14-10-2018 IPR035906 MetI-like superfamily RY45_14235 ee50a509194764145a9e1d8e19bf0f6c 225 Gene3D G3DSA:1.10.3720.10 7 216 9.4E-53 T 14-10-2018 IPR035906 MetI-like superfamily RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 Pfam PF04830 Possible hemagglutinin (DUF637) 2870 3044 2.8E-32 T 14-10-2018 IPR006915 Domain of unknown function DUF637, haemagglutinin putative RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1034 1072 0.027 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1135 1161 0.2 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 815 845 0.17 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 756 788 0.13 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1535 1569 0.58 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1704 1743 1.8E-4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 544 581 2.3E-5 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 996 1034 1.8E-4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1515 1550 0.031 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1669 1704 0.064 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2387 2426 2.6E-4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1077 1105 2.0 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 31 68 0.0078 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1110 1147 2.1 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1282 1320 0.55 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1463 1493 0.0031 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1743 1784 0.093 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1497 1529 0.016 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 SUPERFAMILY SSF51126 1106 1432 1.69E-6 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 Pfam PF13332 Haemagluttinin repeat 2669 2749 3.1E-11 T 14-10-2018 IPR025157 Hemagglutinin repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 Pfam PF13332 Haemagluttinin repeat 2536 2589 2.9E-4 T 14-10-2018 IPR025157 Hemagglutinin repeat RY45_06805 4d9f0f0afa1f028b5fb608ef9d373a6d 3403 Pfam PF13332 Haemagluttinin repeat 2603 2665 0.0086 T 14-10-2018 IPR025157 Hemagglutinin repeat RY45_02560 67aeb32035541dc2f05ccc83c6f956ff 137 Pfam PF13673 Acetyltransferase (GNAT) domain 38 120 1.6E-10 T 14-10-2018 IPR000182 GNAT domain RY45_02560 67aeb32035541dc2f05ccc83c6f956ff 137 SUPERFAMILY SSF55729 35 135 1.15E-23 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_02560 67aeb32035541dc2f05ccc83c6f956ff 137 Gene3D G3DSA:3.40.630.30 35 136 1.8E-26 T 14-10-2018 RY45_13930 cef8fd45e9740098dba028c948ccb64c 147 Gene3D G3DSA:3.30.1460.10 1 132 1.5E-30 T 14-10-2018 RY45_13930 cef8fd45e9740098dba028c948ccb64c 147 Pfam PF05932 Tir chaperone protein (CesT) family 9 126 8.9E-18 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 RY45_13930 cef8fd45e9740098dba028c948ccb64c 147 SUPERFAMILY SSF69635 6 132 2.29E-30 T 14-10-2018 RY45_14400 15d28222ed1a4ed4e2bc706a85ea0b0b 379 SMART SM00382 122 247 0.0054 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_14400 15d28222ed1a4ed4e2bc706a85ea0b0b 379 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 1.3E-131 T 14-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 RY45_14400 15d28222ed1a4ed4e2bc706a85ea0b0b 379 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_14400 15d28222ed1a4ed4e2bc706a85ea0b0b 379 Gene3D G3DSA:3.30.450.90 1 99 1.3E-28 T 14-10-2018 RY45_14400 15d28222ed1a4ed4e2bc706a85ea0b0b 379 SUPERFAMILY SSF52540 4 336 2.56E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14400 15d28222ed1a4ed4e2bc706a85ea0b0b 379 Pfam PF00437 Type II/IV secretion system protein 115 246 9.0E-37 T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_14400 15d28222ed1a4ed4e2bc706a85ea0b0b 379 Gene3D G3DSA:3.40.50.300 100 356 7.3E-90 T 14-10-2018 RY45_14805 4510f2049efd5c93cb0fefc31862be7c 248 Pfam PF00460 Flagella basal body rod protein 5 35 4.7E-8 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_14805 4510f2049efd5c93cb0fefc31862be7c 248 SUPERFAMILY SSF117143 77 206 2.88E-16 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RY45_14805 4510f2049efd5c93cb0fefc31862be7c 248 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 174 243 3.3E-21 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14805 4510f2049efd5c93cb0fefc31862be7c 248 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 5.4E-35 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RY45_14805 4510f2049efd5c93cb0fefc31862be7c 248 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 225 7.1E-56 T 14-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 RY45_20020 7603a724e86fce636efb2b6337e1875b 156 Gene3D G3DSA:2.40.70.10 31 152 4.2E-25 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily RY45_20020 7603a724e86fce636efb2b6337e1875b 156 SUPERFAMILY SSF50630 41 142 1.36E-16 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily RY45_20020 7603a724e86fce636efb2b6337e1875b 156 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 61 72 - T 14-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 RY45_20020 7603a724e86fce636efb2b6337e1875b 156 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 39 152 9.1E-23 T 14-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal RY45_20020 7603a724e86fce636efb2b6337e1875b 156 Pfam PF13975 gag-polyprotein putative aspartyl protease 51 139 1.5E-19 T 14-10-2018 RY45_13660 494c576ee1c485f7a4ee9672c2f3269c 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 191 4.3E-59 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_13660 494c576ee1c485f7a4ee9672c2f3269c 193 PIRSF PIRSF006102 1 193 5.2E-62 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_13660 494c576ee1c485f7a4ee9672c2f3269c 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 2.3E-88 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 RY45_13660 494c576ee1c485f7a4ee9672c2f3269c 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.162 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 RY45_02470 30db06b13e301f089672153887b45b10 444 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 15 416 3.5E-152 T 14-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RY45_02470 30db06b13e301f089672153887b45b10 444 Pfam PF05525 Branched-chain amino acid transport protein 9 429 2.3E-148 T 14-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RY45_19760 b7bc17b7d874e8c0a72f8c0714b55a28 201 Pfam PF12464 Maltose acetyltransferase 17 65 9.8E-15 T 14-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RY45_19760 b7bc17b7d874e8c0a72f8c0714b55a28 201 SUPERFAMILY SSF51161 14 196 1.22E-51 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_19760 b7bc17b7d874e8c0a72f8c0714b55a28 201 Gene3D G3DSA:2.160.10.10 8 198 3.8E-68 T 14-10-2018 RY45_19760 b7bc17b7d874e8c0a72f8c0714b55a28 201 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 148 176 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_19760 b7bc17b7d874e8c0a72f8c0714b55a28 201 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 139 174 7.3E-11 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_19760 b7bc17b7d874e8c0a72f8c0714b55a28 201 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 95 119 0.064 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_19760 b7bc17b7d874e8c0a72f8c0714b55a28 201 SMART SM01266 15 68 8.0E-19 T 14-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RY45_16875 c6c869a7eb8117e7764b2eb278e7bfaf 576 Gene3D G3DSA:3.90.1640.30 47 324 6.9E-87 T 14-10-2018 RY45_16875 c6c869a7eb8117e7764b2eb278e7bfaf 576 SUPERFAMILY SSF64182 46 464 3.27E-119 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily RY45_16875 c6c869a7eb8117e7764b2eb278e7bfaf 576 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 21 570 4.5E-155 T 14-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RY45_16875 c6c869a7eb8117e7764b2eb278e7bfaf 576 Gene3D G3DSA:3.10.310.30 325 455 2.4E-31 T 14-10-2018 RY45_16875 c6c869a7eb8117e7764b2eb278e7bfaf 576 Pfam PF01368 DHH family 71 199 1.2E-9 T 14-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RY45_16875 c6c869a7eb8117e7764b2eb278e7bfaf 576 Pfam PF02272 DHHA1 domain 321 451 1.3E-26 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RY45_06735 51546a0805cf6d64a9773a3a9792ddaf 104 Pfam PF11006 Protein of unknown function (DUF2845) 23 100 1.2E-22 T 14-10-2018 IPR021268 Protein of unknown function DUF2845 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 Gene3D G3DSA:3.40.50.720 1 146 2.7E-64 T 14-10-2018 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 56.474 T 14-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 SUPERFAMILY SSF56327 146 310 3.4E-43 T 14-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 2.7E-129 T 14-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 2.9E-51 T 14-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 PIRSF PIRSF000102 1 308 4.8E-58 T 14-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 SUPERFAMILY SSF51735 1 145 3.15E-38 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 Gene3D G3DSA:3.90.110.10 147 311 2.8E-53 T 14-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 3.8E-45 T 14-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_03740 b9f03adde4091262407d08ae8f7d70bf 311 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 14-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RY45_13215 f1744ede9becc23075c8552af09370d6 474 Gene3D G3DSA:3.50.50.60 1 473 1.1E-106 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_13215 f1744ede9becc23075c8552af09370d6 474 SUPERFAMILY SSF51905 8 449 1.01E-46 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_13215 f1744ede9becc23075c8552af09370d6 474 Pfam PF01593 Flavin containing amine oxidoreductase 17 280 1.2E-19 T 14-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RY45_13215 f1744ede9becc23075c8552af09370d6 474 PRINTS PR00419 Adrenodoxin reductase family signature 31 44 1.3E-7 T 14-10-2018 RY45_13215 f1744ede9becc23075c8552af09370d6 474 PRINTS PR00419 Adrenodoxin reductase family signature 8 30 1.3E-7 T 14-10-2018 RY45_10960 72104fa312987626f1abe3815f121918 256 Pfam PF02698 DUF218 domain 81 244 1.4E-24 T 14-10-2018 IPR003848 Domain of unknown function DUF218 RY45_15615 ef85010ad40f0b6cfd5dd82427ddf502 239 SUPERFAMILY SSF46894 138 233 2.07E-20 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_15615 ef85010ad40f0b6cfd5dd82427ddf502 239 SUPERFAMILY SSF52172 2 123 1.42E-35 T 14-10-2018 IPR011006 CheY-like superfamily RY45_15615 ef85010ad40f0b6cfd5dd82427ddf502 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 232 4.7E-17 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_15615 ef85010ad40f0b6cfd5dd82427ddf502 239 Gene3D G3DSA:1.10.10.10 124 236 3.0E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_15615 ef85010ad40f0b6cfd5dd82427ddf502 239 SMART SM00448 4 114 1.4E-37 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_15615 ef85010ad40f0b6cfd5dd82427ddf502 239 Gene3D G3DSA:3.40.50.2300 1 123 7.1E-33 T 14-10-2018 RY45_15615 ef85010ad40f0b6cfd5dd82427ddf502 239 SMART SM00862 156 232 1.0E-13 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_15615 ef85010ad40f0b6cfd5dd82427ddf502 239 Pfam PF00072 Response regulator receiver domain 6 113 1.3E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13050 24849d1ebed968df66d52ad2767fafdc 113 PIRSF PIRSF004761 1 113 9.2E-36 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 RY45_13050 24849d1ebed968df66d52ad2767fafdc 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 14-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site RY45_13050 24849d1ebed968df66d52ad2767fafdc 113 Gene3D G3DSA:3.30.2320.80 1 113 2.3E-29 T 14-10-2018 RY45_13050 24849d1ebed968df66d52ad2767fafdc 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 2.0E-31 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 RY45_13050 24849d1ebed968df66d52ad2767fafdc 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 21.132 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 RY45_13050 24849d1ebed968df66d52ad2767fafdc 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 112 1.0E-33 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 RY45_18155 b4ff33069f1c34597556c6ad73ab84f7 247 Gene3D G3DSA:3.40.1350.60 81 237 7.9E-52 T 14-10-2018 RY45_18155 b4ff33069f1c34597556c6ad73ab84f7 247 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 4 225 7.3E-73 T 14-10-2018 IPR005224 Sugar fermentation stimulation protein RY45_18155 b4ff33069f1c34597556c6ad73ab84f7 247 Gene3D G3DSA:2.40.50.580 1 80 1.9E-29 T 14-10-2018 RY45_18155 b4ff33069f1c34597556c6ad73ab84f7 247 Pfam PF03749 Sugar fermentation stimulation protein 13 228 4.6E-73 T 14-10-2018 IPR005224 Sugar fermentation stimulation protein RY45_18155 b4ff33069f1c34597556c6ad73ab84f7 247 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 238 58.174 T 14-10-2018 IPR005224 Sugar fermentation stimulation protein RY45_08815 da0fd417b0e0b09a30042ff523b13e50 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 2.2E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_08815 da0fd417b0e0b09a30042ff523b13e50 300 SUPERFAMILY SSF53850 88 290 5.97E-51 T 14-10-2018 RY45_08815 da0fd417b0e0b09a30042ff523b13e50 300 Gene3D G3DSA:3.40.190.290 91 290 1.9E-70 T 14-10-2018 RY45_08815 da0fd417b0e0b09a30042ff523b13e50 300 SUPERFAMILY SSF46785 5 111 2.72E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08815 da0fd417b0e0b09a30042ff523b13e50 300 Pfam PF03466 LysR substrate binding domain 88 289 1.3E-46 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_08815 da0fd417b0e0b09a30042ff523b13e50 300 Gene3D G3DSA:1.10.10.10 3 89 4.4E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21760 3d967d3811dc24fb0ce17a460f1de6f6 236 SMART SM00448 2 112 5.8E-32 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_21760 3d967d3811dc24fb0ce17a460f1de6f6 236 SUPERFAMILY SSF52172 1 126 1.71E-31 T 14-10-2018 IPR011006 CheY-like superfamily RY45_21760 3d967d3811dc24fb0ce17a460f1de6f6 236 Pfam PF00072 Response regulator receiver domain 4 112 4.0E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_21760 3d967d3811dc24fb0ce17a460f1de6f6 236 SUPERFAMILY SSF46894 131 231 2.49E-25 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_21760 3d967d3811dc24fb0ce17a460f1de6f6 236 Gene3D G3DSA:1.10.10.10 119 236 5.9E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21760 3d967d3811dc24fb0ce17a460f1de6f6 236 SMART SM00862 154 230 2.3E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_21760 3d967d3811dc24fb0ce17a460f1de6f6 236 Gene3D G3DSA:3.40.50.2300 1 118 4.1E-28 T 14-10-2018 RY45_21760 3d967d3811dc24fb0ce17a460f1de6f6 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 230 1.2E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_04290 d43672af655b5e29fdc293594f414967 427 Gene3D G3DSA:1.10.287.130 158 273 3.3E-27 T 14-10-2018 RY45_04290 d43672af655b5e29fdc293594f414967 427 Pfam PF00672 HAMP domain 155 205 5.5E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_04290 d43672af655b5e29fdc293594f414967 427 SUPERFAMILY SSF47384 195 273 1.94E-14 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_04290 d43672af655b5e29fdc293594f414967 427 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 426 4.0E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_04290 d43672af655b5e29fdc293594f414967 427 SMART SM00387 319 427 7.4E-22 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_04290 d43672af655b5e29fdc293594f414967 427 Gene3D G3DSA:3.30.565.10 278 427 1.3E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_04290 d43672af655b5e29fdc293594f414967 427 SUPERFAMILY SSF55874 279 426 5.63E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_04290 d43672af655b5e29fdc293594f414967 427 SUPERFAMILY SSF158472 154 205 3.27E-7 T 14-10-2018 RY45_04290 d43672af655b5e29fdc293594f414967 427 SMART SM00388 210 273 4.3E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_04290 d43672af655b5e29fdc293594f414967 427 SMART SM00304 154 209 2.6E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_04290 d43672af655b5e29fdc293594f414967 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 384 7.8E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_04290 d43672af655b5e29fdc293594f414967 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 407 7.8E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_04290 d43672af655b5e29fdc293594f414967 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 370 7.8E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_04290 d43672af655b5e29fdc293594f414967 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 426 7.8E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_04290 d43672af655b5e29fdc293594f414967 427 Pfam PF00512 His Kinase A (phospho-acceptor) domain 210 273 3.2E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_05880 bf1fb9c7b505d00368b0a0c6ecf58c93 142 SUPERFAMILY SSF54427 2 135 1.59E-23 T 14-10-2018 IPR032710 NTF2-like domain superfamily RY45_05880 bf1fb9c7b505d00368b0a0c6ecf58c93 142 Pfam PF12680 SnoaL-like domain 10 112 4.1E-12 T 14-10-2018 IPR037401 SnoaL-like domain RY45_05880 bf1fb9c7b505d00368b0a0c6ecf58c93 142 Gene3D G3DSA:3.10.450.50 6 124 3.2E-20 T 14-10-2018 RY45_11525 866707119a1ef1309f00e935f75a6d64 481 Gene3D G3DSA:3.30.1330.120 286 424 1.5E-194 T 14-10-2018 RY45_11525 866707119a1ef1309f00e935f75a6d64 481 SUPERFAMILY SSF103378 13 480 2.35E-156 T 14-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 RY45_11525 866707119a1ef1309f00e935f75a6d64 481 Gene3D G3DSA:1.10.4100.10 23 459 1.5E-194 T 14-10-2018 RY45_11525 866707119a1ef1309f00e935f75a6d64 481 Pfam PF03972 MmgE/PrpD family 19 461 8.0E-156 T 14-10-2018 IPR005656 MmgE/PrpD GO:0016829 RY45_11525 866707119a1ef1309f00e935f75a6d64 481 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 14 481 6.1E-265 T 14-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 RY45_16030 9cb0221e9000d032e6979f11bd4fd0dd 294 Pfam PF03466 LysR substrate binding domain 95 287 2.2E-17 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_16030 9cb0221e9000d032e6979f11bd4fd0dd 294 SUPERFAMILY SSF53850 94 290 5.97E-19 T 14-10-2018 RY45_16030 9cb0221e9000d032e6979f11bd4fd0dd 294 SUPERFAMILY SSF46785 8 91 1.34E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_16030 9cb0221e9000d032e6979f11bd4fd0dd 294 Gene3D G3DSA:3.40.190.290 132 271 1.3E-12 T 14-10-2018 RY45_16030 9cb0221e9000d032e6979f11bd4fd0dd 294 Gene3D G3DSA:1.10.10.10 4 87 4.2E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16030 9cb0221e9000d032e6979f11bd4fd0dd 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.4E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_05230 63ae22694356bb508b10380a37431365 336 SUPERFAMILY SSF56112 8 311 3.29E-42 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily RY45_05230 63ae22694356bb508b10380a37431365 336 Pfam PF01636 Phosphotransferase enzyme family 24 241 5.3E-24 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase RY45_05230 63ae22694356bb508b10380a37431365 336 Gene3D G3DSA:3.30.200.20 2 87 2.6E-11 T 14-10-2018 RY45_05230 63ae22694356bb508b10380a37431365 336 Gene3D G3DSA:3.90.1200.10 88 328 3.5E-65 T 14-10-2018 RY45_05305 d36b1c370691ea24af5dfcb1497b17e5 247 SMART SM01133 1 233 2.5E-69 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RY45_05305 d36b1c370691ea24af5dfcb1497b17e5 247 SUPERFAMILY SSF51569 2 233 1.36E-71 T 14-10-2018 RY45_05305 d36b1c370691ea24af5dfcb1497b17e5 247 Pfam PF01791 DeoC/LacD family aldolase 2 227 1.8E-32 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RY45_05305 d36b1c370691ea24af5dfcb1497b17e5 247 PIRSF PIRSF001357 1 240 1.1E-69 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RY45_05305 d36b1c370691ea24af5dfcb1497b17e5 247 Gene3D G3DSA:3.20.20.70 1 237 3.0E-88 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_05305 d36b1c370691ea24af5dfcb1497b17e5 247 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 2 216 3.2E-62 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RY45_08935 94868c742adcf180e5eab5c7c25116cf 167 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 23 117 2.1E-15 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RY45_08935 94868c742adcf180e5eab5c7c25116cf 167 SUPERFAMILY SSF53927 21 146 1.54E-31 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_08935 94868c742adcf180e5eab5c7c25116cf 167 Gene3D G3DSA:3.40.140.10 22 162 2.9E-35 T 14-10-2018 RY45_08935 94868c742adcf180e5eab5c7c25116cf 167 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 72 106 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 Gene3D G3DSA:3.40.228.10 198 649 2.0E-235 T 14-10-2018 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 Pfam PF00384 Molybdopterin oxidoreductase 105 563 9.7E-95 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 SUPERFAMILY SSF50692 679 820 1.02E-39 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 506 523 - T 14-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 10 34 1.6E-5 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 SUPERFAMILY SSF53706 63 683 6.89E-170 T 14-10-2018 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 Gene3D G3DSA:3.40.50.740 105 572 2.0E-235 T 14-10-2018 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 Gene3D G3DSA:3.90.55.10 103 623 2.0E-235 T 14-10-2018 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 62 824 0.0 T 14-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 Gene3D G3DSA:2.40.40.20 657 819 4.7E-49 T 14-10-2018 RY45_21135 1a89e5536913b3c06aa406268b2527a9 826 Pfam PF01568 Molydopterin dinucleotide binding domain 683 798 2.6E-24 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 441 6.0E-162 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 Pfam PF01235 Sodium:alanine symporter family 48 452 3.4E-162 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 87 102 - T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 PRINTS PR00175 Sodium/alanine symporter signature 178 196 8.9E-60 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 PRINTS PR00175 Sodium/alanine symporter signature 410 430 8.9E-60 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 PRINTS PR00175 Sodium/alanine symporter signature 349 371 8.9E-60 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 PRINTS PR00175 Sodium/alanine symporter signature 303 321 8.9E-60 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 PRINTS PR00175 Sodium/alanine symporter signature 87 109 8.9E-60 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_16190 5fb90cc597a64734986a8ceb27020284 480 PRINTS PR00175 Sodium/alanine symporter signature 206 225 8.9E-60 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RY45_09380 9454519a315d30c18886a3ba1734754d 411 Gene3D G3DSA:3.30.9.50 81 271 1.0E-118 T 14-10-2018 RY45_09380 9454519a315d30c18886a3ba1734754d 411 SUPERFAMILY SSF51905 6 386 3.02E-55 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09380 9454519a315d30c18886a3ba1734754d 411 Pfam PF01494 FAD binding domain 6 317 2.3E-29 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 RY45_09380 9454519a315d30c18886a3ba1734754d 411 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 296 309 - T 14-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 RY45_09380 9454519a315d30c18886a3ba1734754d 411 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 392 2.1E-134 T 14-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 RY45_09380 9454519a315d30c18886a3ba1734754d 411 Gene3D G3DSA:3.50.50.60 7 340 1.0E-118 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_09380 9454519a315d30c18886a3ba1734754d 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 4.3E-19 T 14-10-2018 RY45_09380 9454519a315d30c18886a3ba1734754d 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 4.3E-19 T 14-10-2018 RY45_09380 9454519a315d30c18886a3ba1734754d 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 4.3E-19 T 14-10-2018 RY45_09380 9454519a315d30c18886a3ba1734754d 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 4.3E-19 T 14-10-2018 RY45_16985 d013cd804160fa53ba826d40a21b14ca 242 Pfam PF03575 Peptidase family S51 3 205 2.5E-45 T 14-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 RY45_16985 d013cd804160fa53ba826d40a21b14ca 242 Gene3D G3DSA:3.40.50.880 1 230 5.1E-51 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_16985 d013cd804160fa53ba826d40a21b14ca 242 SUPERFAMILY SSF52317 1 207 1.49E-36 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_01455 4860ba73dbc1ac0fdcbd490bd61c87d4 294 Pfam PF03466 LysR substrate binding domain 88 290 5.4E-43 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_01455 4860ba73dbc1ac0fdcbd490bd61c87d4 294 Gene3D G3DSA:3.40.190.290 91 291 8.1E-61 T 14-10-2018 RY45_01455 4860ba73dbc1ac0fdcbd490bd61c87d4 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.3E-13 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01455 4860ba73dbc1ac0fdcbd490bd61c87d4 294 SUPERFAMILY SSF46785 4 112 6.16E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_01455 4860ba73dbc1ac0fdcbd490bd61c87d4 294 Gene3D G3DSA:1.10.10.10 3 89 1.8E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01455 4860ba73dbc1ac0fdcbd490bd61c87d4 294 SUPERFAMILY SSF53850 87 292 7.24E-47 T 14-10-2018 RY45_18120 f5459b819d520905bb4009071003eb91 293 Gene3D G3DSA:1.10.10.10 1 89 5.7E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_18120 f5459b819d520905bb4009071003eb91 293 Gene3D G3DSA:3.40.190.290 92 289 2.3E-34 T 14-10-2018 RY45_18120 f5459b819d520905bb4009071003eb91 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 8.9E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_18120 f5459b819d520905bb4009071003eb91 293 Pfam PF03466 LysR substrate binding domain 93 288 2.5E-23 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_18120 f5459b819d520905bb4009071003eb91 293 SUPERFAMILY SSF46785 1 81 4.99E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_18120 f5459b819d520905bb4009071003eb91 293 SUPERFAMILY SSF53850 93 291 6.63E-28 T 14-10-2018 RY45_03595 5e5b877104df9ce257298d40fe5de77c 166 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 14-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 RY45_03595 5e5b877104df9ce257298d40fe5de77c 166 Gene3D G3DSA:3.40.30.10 1 166 1.6E-42 T 14-10-2018 RY45_03595 5e5b877104df9ce257298d40fe5de77c 166 SUPERFAMILY SSF52833 4 164 6.02E-39 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_03595 5e5b877104df9ce257298d40fe5de77c 166 Pfam PF08534 Redoxin 21 163 1.8E-25 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 RY45_03595 5e5b877104df9ce257298d40fe5de77c 166 Hamap MF_00269 Thiol peroxidase [tpx]. 4 166 36.198 T 14-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 RY45_01090 33b2972c40016c193cb8ba6d79ad12ff 152 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 151 3.3E-49 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 RY45_01090 33b2972c40016c193cb8ba6d79ad12ff 152 SUPERFAMILY SSF51283 1 151 3.66E-55 T 14-10-2018 IPR036157 dUTPase-like superfamily RY45_01090 33b2972c40016c193cb8ba6d79ad12ff 152 Gene3D G3DSA:2.70.40.10 1 151 3.5E-54 T 14-10-2018 IPR036157 dUTPase-like superfamily RY45_01090 33b2972c40016c193cb8ba6d79ad12ff 152 Pfam PF00692 dUTPase 18 150 2.5E-40 T 14-10-2018 IPR029054 dUTPase-like RY45_01090 33b2972c40016c193cb8ba6d79ad12ff 152 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 151 34.28 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 Pfam PF13426 PAS domain 104 205 5.0E-4 T 14-10-2018 IPR000014 PAS domain RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 Pfam PF13426 PAS domain 242 343 0.059 T 14-10-2018 IPR000014 PAS domain RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 SUPERFAMILY SSF58104 409 676 3.58E-65 T 14-10-2018 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 SMART SM00304 389 441 0.12 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 SMART SM00304 17 74 17.0 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 502 643 1.6E-34 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 SMART SM00283 442 675 1.1E-67 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 Gene3D G3DSA:3.30.450.20 87 207 3.1E-44 T 14-10-2018 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 Gene3D G3DSA:3.30.450.20 225 345 1.4E-41 T 14-10-2018 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 SUPERFAMILY SSF55785 82 198 3.66E-6 T 14-10-2018 IPR035965 PAS domain superfamily RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 Gene3D G3DSA:1.10.287.950 388 677 3.5E-71 T 14-10-2018 RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 SMART SM00091 229 294 5.9 T 14-10-2018 IPR000014 PAS domain RY45_05650 2b650a9f76038d8607a86a3af39174a0 722 SMART SM00091 91 152 5.8 T 14-10-2018 IPR000014 PAS domain RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 SUPERFAMILY SSF53067 187 382 2.01E-66 T 14-10-2018 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 Gene3D G3DSA:2.60.34.10 383 523 7.6E-68 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 Gene3D G3DSA:3.90.640.10 229 316 1.3E-165 T 14-10-2018 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 Gene3D G3DSA:3.30.420.40 5 379 1.3E-165 T 14-10-2018 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 SUPERFAMILY SSF100934 507 611 2.16E-16 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 Gene3D G3DSA:3.30.420.40 180 366 1.3E-165 T 14-10-2018 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 637 36.711 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 Pfam PF00012 Hsp70 protein 4 602 7.7E-262 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 Gene3D G3DSA:1.20.1270.10 524 603 1.0E-27 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 1.1E-290 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 SUPERFAMILY SSF100920 385 540 1.96E-61 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 SUPERFAMILY SSF53067 4 182 1.06E-64 T 14-10-2018 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 198 208 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 334 350 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 388 407 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 469 485 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 365 385 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_15375 2fc8270bd23b68adaf7f2f19a656b448 642 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.2E-79 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RY45_17165 16b7fd1e044017833fd4b9117cdb9486 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 32.187 T 14-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17165 16b7fd1e044017833fd4b9117cdb9486 156 SUPERFAMILY SSF52121 3 154 6.8E-61 T 14-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17165 16b7fd1e044017833fd4b9117cdb9486 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 1.9E-56 T 14-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17165 16b7fd1e044017833fd4b9117cdb9486 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 1.9E-56 T 14-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_17165 16b7fd1e044017833fd4b9117cdb9486 156 Gene3D G3DSA:3.40.50.960 1 156 2.6E-64 T 14-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_13240 1baed5a2b8f4282693374261a1493d98 226 SMART SM00382 30 224 3.2E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_13240 1baed5a2b8f4282693374261a1493d98 226 Gene3D G3DSA:3.40.50.300 1 225 3.8E-66 T 14-10-2018 RY45_13240 1baed5a2b8f4282693374261a1493d98 226 SUPERFAMILY SSF52540 1 221 5.58E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13240 1baed5a2b8f4282693374261a1493d98 226 Pfam PF00005 ABC transporter 22 167 5.3E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_13240 1baed5a2b8f4282693374261a1493d98 226 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_18855 c2e63647751c11893ac2b8af5f971ab8 301 SUPERFAMILY SSF53474 15 295 4.25E-29 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_18855 c2e63647751c11893ac2b8af5f971ab8 301 Pfam PF00561 alpha/beta hydrolase fold 32 175 1.3E-14 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_18855 c2e63647751c11893ac2b8af5f971ab8 301 Gene3D G3DSA:3.40.50.1820 4 298 7.7E-26 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 6.5E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 6.5E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 6.5E-16 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 182 7.5E-5 T 14-10-2018 RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.8E-52 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.8E-52 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.8E-52 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.8E-52 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.8E-52 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 4.8E-52 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 SUPERFAMILY SSF51735 5 243 2.88E-88 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 5.3E-102 T 14-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 5.6E-70 T 14-10-2018 RY45_11605 a7907ba9e6cf4ce61daee920af8e46fa 244 Gene3D G3DSA:3.40.50.720 1 244 5.4E-89 T 14-10-2018 RY45_15110 ccbefd374905949ab200536c38945567 544 Gene3D G3DSA:3.60.120.10 8 527 4.8E-179 T 14-10-2018 IPR005801 ADC synthase GO:0009058 RY45_15110 ccbefd374905949ab200536c38945567 544 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 21 524 1.6E-207 T 14-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_15110 ccbefd374905949ab200536c38945567 544 Pfam PF00425 chorismate binding enzyme 252 512 9.4E-85 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RY45_15110 ccbefd374905949ab200536c38945567 544 PRINTS PR00095 Anthranilate synthase component I signature 374 387 4.2E-23 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_15110 ccbefd374905949ab200536c38945567 544 PRINTS PR00095 Anthranilate synthase component I signature 469 483 4.2E-23 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_15110 ccbefd374905949ab200536c38945567 544 PRINTS PR00095 Anthranilate synthase component I signature 454 468 4.2E-23 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_15110 ccbefd374905949ab200536c38945567 544 PRINTS PR00095 Anthranilate synthase component I signature 360 373 4.2E-23 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_15110 ccbefd374905949ab200536c38945567 544 PIRSF PIRSF001373 1 531 2.5E-248 T 14-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_15110 ccbefd374905949ab200536c38945567 544 Pfam PF04715 Anthranilate synthase component I, N terminal region 23 195 1.2E-17 T 14-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_15110 ccbefd374905949ab200536c38945567 544 SUPERFAMILY SSF56322 16 520 3.01E-150 T 14-10-2018 IPR005801 ADC synthase GO:0009058 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 Gene3D G3DSA:3.30.565.10 285 432 3.1E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 Gene3D G3DSA:1.10.287.130 167 278 3.2E-25 T 14-10-2018 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 SMART SM00388 223 283 2.5E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 324 428 6.5E-18 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 408 3.2E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 385 3.2E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 371 3.2E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 SMART SM00387 322 430 1.5E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 SMART SM00304 170 222 7.4E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 Pfam PF00672 HAMP domain 170 217 6.5E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 SUPERFAMILY SSF55874 283 430 2.62E-30 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 279 2.6E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 SUPERFAMILY SSF158472 170 221 6.54E-6 T 14-10-2018 RY45_01825 a3fd5a2436589649e3f69594e0c7b4db 436 SUPERFAMILY SSF47384 206 283 1.2E-12 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_13080 bf296f09db47b20e000fd8a3c92f850e 543 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 90 444 1.4E-70 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_13080 bf296f09db47b20e000fd8a3c92f850e 543 Gene3D G3DSA:3.40.190.10 60 526 4.6E-165 T 14-10-2018 RY45_13080 bf296f09db47b20e000fd8a3c92f850e 543 SUPERFAMILY SSF53850 49 516 4.89E-88 T 14-10-2018 RY45_13080 bf296f09db47b20e000fd8a3c92f850e 543 PIRSF PIRSF002741 18 529 9.2E-65 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_13080 bf296f09db47b20e000fd8a3c92f850e 543 Gene3D G3DSA:3.10.105.10 268 514 4.6E-165 T 14-10-2018 RY45_15280 3c2109d83d3b2644df345ac4d32f634d 399 SUPERFAMILY SSF111369 55 305 1.83E-69 T 14-10-2018 RY45_15280 3c2109d83d3b2644df345ac4d32f634d 399 Gene3D G3DSA:2.40.30.170 61 288 5.8E-75 T 14-10-2018 RY45_15280 3c2109d83d3b2644df345ac4d32f634d 399 Pfam PF13533 Biotin-lipoyl like 69 116 9.1E-9 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RY45_15280 3c2109d83d3b2644df345ac4d32f634d 399 Gene3D G3DSA:1.10.287.470 102 175 5.8E-75 T 14-10-2018 RY45_15280 3c2109d83d3b2644df345ac4d32f634d 399 Gene3D G3DSA:2.40.50.100 67 212 5.8E-75 T 14-10-2018 RY45_15280 3c2109d83d3b2644df345ac4d32f634d 399 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 379 1.0E-80 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_15280 3c2109d83d3b2644df345ac4d32f634d 399 Gene3D G3DSA:2.40.420.20 289 381 2.4E-22 T 14-10-2018 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 Gene3D G3DSA:1.10.1740.10 312 397 1.6E-27 T 14-10-2018 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 PIRSF PIRSF006205 1 397 1.5E-147 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 4.1E-36 T 14-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 391 3.2E-158 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 1.8E-38 T 14-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 SUPERFAMILY SSF55347 126 274 1.93E-62 T 14-10-2018 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 45.656 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 SUPERFAMILY SSF51735 3 150 5.26E-45 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 SUPERFAMILY SSF69055 302 395 3.01E-29 T 14-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 Gene3D G3DSA:3.40.50.720 1 150 1.1E-50 T 14-10-2018 RY45_06325 867aa7df0ddc20cd5284ebf1effc6f2c 397 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 7.0E-44 T 14-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RY45_21685 b6655e5e3bd1c54ee0a1fc344c05558c 174 Gene3D G3DSA:3.40.630.30 3 166 7.2E-19 T 14-10-2018 RY45_21685 b6655e5e3bd1c54ee0a1fc344c05558c 174 Pfam PF13302 Acetyltransferase (GNAT) domain 6 143 2.0E-6 T 14-10-2018 IPR000182 GNAT domain RY45_21685 b6655e5e3bd1c54ee0a1fc344c05558c 174 SUPERFAMILY SSF55729 4 152 3.21E-15 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_03105 0d4e958d7d7e94645eb1ec9719619c71 301 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 13 297 4.4E-92 T 14-10-2018 RY45_03105 0d4e958d7d7e94645eb1ec9719619c71 301 Pfam PF01040 UbiA prenyltransferase family 23 255 1.2E-36 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RY45_03105 0d4e958d7d7e94645eb1ec9719619c71 301 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 4 298 20.927 T 14-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RY45_03105 0d4e958d7d7e94645eb1ec9719619c71 301 PIRSF PIRSF005355 1 301 6.7E-83 T 14-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 RY45_17810 5f7bd55fcdafda905265776e6ee688f2 83 Pfam PF09905 DNA-binding protein VF530 10 72 5.0E-37 T 14-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 RY45_17810 5f7bd55fcdafda905265776e6ee688f2 83 Gene3D G3DSA:1.10.720.30 18 77 9.9E-34 T 14-10-2018 IPR036361 SAP domain superfamily RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 Pfam PF00005 ABC transporter 328 459 3.6E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 Gene3D G3DSA:3.40.50.300 275 538 9.7E-55 T 14-10-2018 RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 SMART SM00382 337 506 2.6E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 SMART SM00382 26 223 3.1E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 SUPERFAMILY SSF52540 295 511 1.22E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 Pfam PF00005 ABC transporter 17 178 1.9E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 Pfam PF16326 ABC transporter C-terminal domain 560 625 1.2E-9 T 14-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 Pfam PF12848 ABC transporter 217 299 1.9E-27 T 14-10-2018 IPR032781 ABC-transporter extension domain RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 SUPERFAMILY SSF52540 4 258 7.43E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18355 d94e4eca1f22eb94aabb3c8fcece5909 636 Gene3D G3DSA:3.40.50.300 6 273 2.2E-61 T 14-10-2018 RY45_14960 a04761b0bae05d5ec52f5ae5039c2e56 69 Pfam PF06568 Domain of unknown function (DUF1127) 29 58 1.2E-9 T 14-10-2018 IPR009506 Protein of unknown function DUF1127 RY45_08325 e7fc020571f2015a548ce8fec6175e8a 160 Gene3D G3DSA:3.10.129.10 10 155 9.4E-27 T 14-10-2018 RY45_08325 e7fc020571f2015a548ce8fec6175e8a 160 SUPERFAMILY SSF54637 7 152 4.41E-23 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_08325 e7fc020571f2015a548ce8fec6175e8a 160 Pfam PF14539 Domain of unknown function (DUF4442) 14 148 6.1E-27 T 14-10-2018 IPR027961 Protein of unknown function DUF4442 RY45_08625 e5f9ae5baa7d83064f10b7495335a099 272 Pfam PF00005 ABC transporter 42 197 4.3E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_08625 e5f9ae5baa7d83064f10b7495335a099 272 SMART SM00382 50 259 9.2E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_08625 e5f9ae5baa7d83064f10b7495335a099 272 SUPERFAMILY SSF52540 23 258 3.31E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08625 e5f9ae5baa7d83064f10b7495335a099 272 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 26 272 3.2E-128 T 14-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RY45_08625 e5f9ae5baa7d83064f10b7495335a099 272 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_08625 e5f9ae5baa7d83064f10b7495335a099 272 Gene3D G3DSA:3.40.50.300 21 269 7.2E-67 T 14-10-2018 RY45_14965 aaca9c13abf2071b5c21132a206bb386 297 Gene3D G3DSA:3.30.54.10 168 293 1.0E-62 T 14-10-2018 RY45_14965 aaca9c13abf2071b5c21132a206bb386 297 Gene3D G3DSA:3.50.14.10 15 275 1.0E-62 T 14-10-2018 IPR036381 Replication terminator Tus, domain 1 GO:0003677|GO:0005737|GO:0006274 RY45_14965 aaca9c13abf2071b5c21132a206bb386 297 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 10 293 3.2E-96 T 14-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 RY45_14965 aaca9c13abf2071b5c21132a206bb386 297 SUPERFAMILY SSF56596 10 294 1.57E-60 T 14-10-2018 IPR036384 Replication terminator Tus superfamily GO:0003677|GO:0005737|GO:0006274 RY45_00055 d4e8d9c9320fecce972365f310143830 274 SMART SM00342 170 252 1.7E-18 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_00055 d4e8d9c9320fecce972365f310143830 274 SUPERFAMILY SSF46689 206 254 2.06E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_00055 d4e8d9c9320fecce972365f310143830 274 SUPERFAMILY SSF51182 27 165 2.43E-12 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_00055 d4e8d9c9320fecce972365f310143830 274 Gene3D G3DSA:2.60.120.10 14 96 2.9E-5 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_00055 d4e8d9c9320fecce972365f310143830 274 Gene3D G3DSA:1.10.10.60 162 258 1.9E-19 T 14-10-2018 RY45_00055 d4e8d9c9320fecce972365f310143830 274 Pfam PF12833 Helix-turn-helix domain 176 253 2.3E-19 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_00055 d4e8d9c9320fecce972365f310143830 274 Pfam PF02311 AraC-like ligand binding domain 28 92 6.4E-5 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 SUPERFAMILY SSF82714 703 787 7.46E-18 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Gene3D G3DSA:3.30.70.1430 556 653 0.0 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Gene3D G3DSA:3.30.70.1320 134 326 0.0 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 SUPERFAMILY SSF82693 41 134 8.11E-26 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Gene3D G3DSA:1.20.1640.10 502 1004 0.0 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Gene3D G3DSA:1.20.1640.10 10 501 0.0 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 SUPERFAMILY SSF82866 291 491 7.85E-48 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 SUPERFAMILY SSF82693 554 656 2.62E-18 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Gene3D G3DSA:3.30.2090.10 178 269 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Gene3D G3DSA:3.30.2090.10 702 790 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_06895 1780249a2091aade46e1424c40a996e7 1039 SUPERFAMILY SSF82714 183 265 8.37E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Gene3D G3DSA:3.30.70.1440 654 847 0.0 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Pfam PF00873 AcrB/AcrD/AcrF family 4 1007 3.2E-284 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 SUPERFAMILY SSF82693 139 324 2.27E-21 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 Gene3D G3DSA:3.30.70.1430 40 798 0.0 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 SUPERFAMILY SSF82866 788 1010 1.31E-51 T 14-10-2018 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_06895 1780249a2091aade46e1424c40a996e7 1039 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 1.6E-72 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RY45_00250 b0945fe0e4a3d2cbdd6ba48cc719e411 395 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 315 4.4E-102 T 14-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_00250 b0945fe0e4a3d2cbdd6ba48cc719e411 395 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 78 2.1E-32 T 14-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_00250 b0945fe0e4a3d2cbdd6ba48cc719e411 395 Pfam PF07055 Enoyl reductase FAD binding domain 323 385 4.2E-24 T 14-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_00250 b0945fe0e4a3d2cbdd6ba48cc719e411 395 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 391 49.956 T 14-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_00250 b0945fe0e4a3d2cbdd6ba48cc719e411 395 Gene3D G3DSA:3.40.50.720 1 394 1.1E-161 T 14-10-2018 RY45_01435 d6178815dfc1d16c759d8c6b5faa26f9 149 SUPERFAMILY SSF55961 3 144 5.26E-43 T 14-10-2018 RY45_01435 d6178815dfc1d16c759d8c6b5faa26f9 149 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 143 3.9E-27 T 14-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RY45_01435 d6178815dfc1d16c759d8c6b5faa26f9 149 Gene3D G3DSA:3.30.530.20 3 147 3.8E-39 T 14-10-2018 IPR023393 START-like domain superfamily RY45_01505 2dc6a466e7b16dcef11f3236786e3612 443 Gene3D G3DSA:3.90.1150.10 29 433 2.9E-150 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_01505 2dc6a466e7b16dcef11f3236786e3612 443 SUPERFAMILY SSF53383 16 440 3.71E-121 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_01505 2dc6a466e7b16dcef11f3236786e3612 443 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 253 290 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_01505 2dc6a466e7b16dcef11f3236786e3612 443 Gene3D G3DSA:3.40.640.10 65 345 2.9E-150 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_01505 2dc6a466e7b16dcef11f3236786e3612 443 Pfam PF00202 Aminotransferase class-III 29 439 3.7E-93 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 Pfam PF00005 ABC transporter 492 641 1.6E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 SUPERFAMILY SSF90123 148 456 2.09E-49 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 ProSitePatterns PS00211 ABC transporters family signature. 613 627 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 Gene3D G3DSA:3.40.50.300 468 713 7.0E-77 T 14-10-2018 RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 SMART SM00382 501 687 3.3E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 Gene3D G3DSA:3.90.70.10 5 132 1.4E-35 T 14-10-2018 RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 Gene3D G3DSA:1.20.1560.10 148 460 1.1E-53 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 9 704 4.1E-304 T 14-10-2018 IPR017750 ATPase, type I secretion system RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 Pfam PF00664 ABC transporter transmembrane region 164 423 5.2E-20 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RY45_14205 cebb474aaf28ef5fe603288d13b22e26 714 SUPERFAMILY SSF52540 464 700 2.06E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02270 446add392a78510389285e1487c6398b 165 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 1.6E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02270 446add392a78510389285e1487c6398b 165 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 26 1.4E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02270 446add392a78510389285e1487c6398b 165 Gene3D G3DSA:3.30.700.10 7 50 1.3E-7 T 14-10-2018 RY45_02270 446add392a78510389285e1487c6398b 165 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02270 446add392a78510389285e1487c6398b 165 SUPERFAMILY SSF54523 7 60 2.83E-9 T 14-10-2018 RY45_16015 3a393cdcbc32fdb6399be9d537fa2ad2 445 Gene3D G3DSA:3.75.10.20 1 445 1.7E-208 T 14-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 RY45_16015 3a393cdcbc32fdb6399be9d537fa2ad2 445 SUPERFAMILY SSF55909 3 445 1.55E-210 T 14-10-2018 RY45_16015 3a393cdcbc32fdb6399be9d537fa2ad2 445 Pfam PF04996 Succinylarginine dihydrolase 3 444 5.2E-228 T 14-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 RY45_16015 3a393cdcbc32fdb6399be9d537fa2ad2 445 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 445 60.786 T 14-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 RY45_16015 3a393cdcbc32fdb6399be9d537fa2ad2 445 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 4 444 2.7E-224 T 14-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 RY45_15655 6372e651c486f0167e05f44d556669d8 235 Pfam PF01980 Uncharacterised protein family UPF0066 20 142 2.1E-41 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain RY45_15655 6372e651c486f0167e05f44d556669d8 235 SUPERFAMILY SSF118196 2 228 1.14E-85 T 14-10-2018 IPR036413 YaeB-like superfamily RY45_15655 6372e651c486f0167e05f44d556669d8 235 Gene3D G3DSA:3.30.2310.10 147 229 3.9E-20 T 14-10-2018 RY45_15655 6372e651c486f0167e05f44d556669d8 235 Gene3D G3DSA:2.40.30.70 23 146 1.7E-48 T 14-10-2018 IPR036414 YaeB, N-terminal domain superfamily RY45_15655 6372e651c486f0167e05f44d556669d8 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 148 1.2E-53 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain RY45_15655 6372e651c486f0167e05f44d556669d8 235 ProSitePatterns PS01318 TsaA-like domain signature. 86 97 - T 14-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site RY45_20255 cb298982d8f402054452eb7f0ffa4dc1 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 5.6E-44 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RY45_20255 cb298982d8f402054452eb7f0ffa4dc1 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 146 243 1.7E-34 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RY45_20255 cb298982d8f402054452eb7f0ffa4dc1 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 9.5E-113 T 14-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 RY45_20255 cb298982d8f402054452eb7f0ffa4dc1 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RY45_20255 cb298982d8f402054452eb7f0ffa4dc1 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 259 4.2E-25 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_20255 cb298982d8f402054452eb7f0ffa4dc1 261 Pfam PF00460 Flagella basal body rod protein 5 35 7.2E-11 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_20255 cb298982d8f402054452eb7f0ffa4dc1 261 SUPERFAMILY SSF117143 93 222 1.03E-36 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RY45_11585 e0cb331ceac99fafad110eb3d82a60f1 333 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 9 332 32.501 T 14-10-2018 IPR003770 Endolytic murein transglycosylase RY45_11585 e0cb331ceac99fafad110eb3d82a60f1 333 Gene3D G3DSA:3.30.160.60 300 332 2.5E-13 T 14-10-2018 RY45_11585 e0cb331ceac99fafad110eb3d82a60f1 333 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 17 330 6.7E-91 T 14-10-2018 IPR003770 Endolytic murein transglycosylase RY45_11585 e0cb331ceac99fafad110eb3d82a60f1 333 Pfam PF02618 YceG-like family 43 326 1.3E-81 T 14-10-2018 IPR003770 Endolytic murein transglycosylase RY45_11585 e0cb331ceac99fafad110eb3d82a60f1 333 Gene3D G3DSA:3.30.160.60 71 107 5.1E-7 T 14-10-2018 RY45_06835 1bff3f40cd94dd4a9595749a98fa6d24 459 TIGRFAM TIGR00797 matE: MATE efflux family protein 26 417 4.0E-57 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_06835 1bff3f40cd94dd4a9595749a98fa6d24 459 Pfam PF01554 MatE 26 185 2.7E-28 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_06835 1bff3f40cd94dd4a9595749a98fa6d24 459 Pfam PF01554 MatE 255 415 1.7E-16 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_06835 1bff3f40cd94dd4a9595749a98fa6d24 459 PIRSF PIRSF006603 8 458 2.5E-64 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_20310 35f3eacf792b34a1745689f0797f2804 230 PRINTS PR01003 Flagellar assembly protein FliH signature 114 131 6.5E-9 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_20310 35f3eacf792b34a1745689f0797f2804 230 PRINTS PR01003 Flagellar assembly protein FliH signature 132 154 6.5E-9 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_20310 35f3eacf792b34a1745689f0797f2804 230 PRINTS PR01003 Flagellar assembly protein FliH signature 75 93 6.5E-9 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_20310 35f3eacf792b34a1745689f0797f2804 230 PRINTS PR01003 Flagellar assembly protein FliH signature 52 74 6.5E-9 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_20310 35f3eacf792b34a1745689f0797f2804 230 PRINTS PR01003 Flagellar assembly protein FliH signature 181 197 6.5E-9 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_20310 35f3eacf792b34a1745689f0797f2804 230 Pfam PF02108 Flagellar assembly protein FliH 97 215 4.2E-16 T 14-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RY45_20405 a59b07a79042986abe50b49e4819259f 244 Gene3D G3DSA:1.10.760.10 27 209 6.9E-18 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_20405 a59b07a79042986abe50b49e4819259f 244 Pfam PF02167 Cytochrome C1 family 33 243 6.0E-18 T 14-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 RY45_20405 a59b07a79042986abe50b49e4819259f 244 PRINTS PR00603 Cytochrome C1 signature 209 224 4.8E-5 T 14-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 RY45_20405 a59b07a79042986abe50b49e4819259f 244 PRINTS PR00603 Cytochrome C1 signature 190 209 4.8E-5 T 14-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 RY45_20405 a59b07a79042986abe50b49e4819259f 244 PRINTS PR00603 Cytochrome C1 signature 42 61 4.8E-5 T 14-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 RY45_20405 a59b07a79042986abe50b49e4819259f 244 SUPERFAMILY SSF46626 16 208 4.65E-50 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_08225 fad817eb8d744b1ddd19b7f690a586b7 149 Pfam PF00877 NlpC/P60 family 42 146 2.0E-28 T 14-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RY45_08225 fad817eb8d744b1ddd19b7f690a586b7 149 SUPERFAMILY SSF54001 23 147 8.5E-41 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RY45_08225 fad817eb8d744b1ddd19b7f690a586b7 149 Gene3D G3DSA:3.90.1720.10 28 149 5.5E-40 T 14-10-2018 RY45_11480 afb61420afdfc695d4d225193b8f7819 298 Pfam PF07819 PGAP1-like protein 157 209 2.3E-9 T 14-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 RY45_11480 afb61420afdfc695d4d225193b8f7819 298 Gene3D G3DSA:3.40.50.1820 103 293 2.4E-42 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_11480 afb61420afdfc695d4d225193b8f7819 298 SUPERFAMILY SSF53474 102 235 5.36E-31 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_15345 5bcd25f0080f794e8fe7151a6915cada 137 Pfam PF04143 Sulphur transport 38 127 4.4E-8 T 14-10-2018 IPR007272 Sulphur transport domain RY45_12300 0d1651d27c4ce46a6b3ff56054e210b2 412 Pfam PF00990 Diguanylate cyclase, GGDEF domain 241 391 7.0E-35 T 14-10-2018 IPR000160 GGDEF domain RY45_12300 0d1651d27c4ce46a6b3ff56054e210b2 412 Gene3D G3DSA:3.30.70.270 227 396 1.2E-44 T 14-10-2018 RY45_12300 0d1651d27c4ce46a6b3ff56054e210b2 412 SMART SM00267 230 395 2.8E-44 T 14-10-2018 IPR000160 GGDEF domain RY45_12300 0d1651d27c4ce46a6b3ff56054e210b2 412 SUPERFAMILY SSF55073 246 396 1.02E-34 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_12300 0d1651d27c4ce46a6b3ff56054e210b2 412 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 237 394 1.3E-32 T 14-10-2018 IPR000160 GGDEF domain RY45_00195 38fc38892be77fd5a28f7f84f8f7e59c 91 SUPERFAMILY SSF63562 1 78 3.53E-24 T 14-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RY45_00195 38fc38892be77fd5a28f7f84f8f7e59c 91 Pfam PF01192 RNA polymerase Rpb6 10 59 1.9E-16 T 14-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RY45_00195 38fc38892be77fd5a28f7f84f8f7e59c 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.65 T 14-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_00195 38fc38892be77fd5a28f7f84f8f7e59c 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 60 1.4E-27 T 14-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RY45_00195 38fc38892be77fd5a28f7f84f8f7e59c 91 Gene3D G3DSA:3.90.940.10 1 91 1.2E-28 T 14-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RY45_00195 38fc38892be77fd5a28f7f84f8f7e59c 91 SMART SM01409 8 61 1.4E-14 T 14-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 SUPERFAMILY SSF69279 14 185 1.08E-55 T 14-10-2018 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 Gene3D G3DSA:3.30.1920.30 221 284 6.3E-92 T 14-10-2018 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 Gene3D G3DSA:2.30.110.50 21 329 6.3E-92 T 14-10-2018 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 SUPERFAMILY SSF69255 367 454 1.73E-33 T 14-10-2018 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 Gene3D G3DSA:3.55.50.10 98 189 6.3E-92 T 14-10-2018 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 Pfam PF05954 Phage late control gene D protein (GPD) 30 327 5.1E-88 T 14-10-2018 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 SUPERFAMILY SSF69349 445 626 3.53E-47 T 14-10-2018 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 Gene3D G3DSA:2.40.50.230 360 459 3.6E-41 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 2.6E-147 T 14-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 SUPERFAMILY SSF69279 197 358 8.5E-42 T 14-10-2018 RY45_06015 4ecbbf8f2bea92a21ce80be62ff5d11d 681 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 524 2.7E-205 T 14-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RY45_12005 7a192850a6b0eb94af11e987344e3cf9 530 Gene3D G3DSA:3.40.50.720 105 253 2.8E-39 T 14-10-2018 RY45_12005 7a192850a6b0eb94af11e987344e3cf9 530 Pfam PF02625 XdhC and CoxI family 12 73 5.5E-15 T 14-10-2018 IPR003777 XdhC- CoxI RY45_12005 7a192850a6b0eb94af11e987344e3cf9 530 Pfam PF13478 XdhC Rossmann domain 106 247 3.1E-34 T 14-10-2018 IPR027051 XdhC Rossmann domain RY45_12005 7a192850a6b0eb94af11e987344e3cf9 530 Gene3D G3DSA:3.40.630.10 398 493 3.7E-6 T 14-10-2018 RY45_12005 7a192850a6b0eb94af11e987344e3cf9 530 TIGRFAM TIGR03309 matur_yqeB: selenium-dependent molybdenum hydroxylase system protein, YqeB family 271 526 1.8E-116 T 14-10-2018 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family RY45_13610 f76820949bcace58a7234fddfe103345 586 SUPERFAMILY SSF57829 424 466 2.01E-5 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RY45_13610 f76820949bcace58a7234fddfe103345 586 Pfam PF00271 Helicase conserved C-terminal domain 240 344 4.2E-14 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_13610 f76820949bcace58a7234fddfe103345 586 Gene3D G3DSA:3.40.50.300 1 165 3.1E-30 T 14-10-2018 RY45_13610 f76820949bcace58a7234fddfe103345 586 SMART SM00487 1 191 3.3E-16 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_13610 f76820949bcace58a7234fddfe103345 586 Gene3D G3DSA:3.40.50.300 225 368 1.3E-33 T 14-10-2018 RY45_13610 f76820949bcace58a7234fddfe103345 586 Pfam PF04851 Type III restriction enzyme, res subunit 2 154 1.1E-23 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RY45_13610 f76820949bcace58a7234fddfe103345 586 SMART SM00490 265 346 6.1E-13 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_13610 f76820949bcace58a7234fddfe103345 586 SUPERFAMILY SSF52540 49 360 2.08E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19005 aa1e61f36bb0b0ddfa51e0b9a5eb4a33 348 Pfam PF04860 Phage portal protein 95 340 1.5E-14 T 14-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein RY45_19005 aa1e61f36bb0b0ddfa51e0b9a5eb4a33 348 PIRSF PIRSF018494 1 341 4.4E-128 T 14-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria RY45_19005 aa1e61f36bb0b0ddfa51e0b9a5eb4a33 348 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 53 327 6.6E-74 T 14-10-2018 IPR006430 Phage portal protein PBSX family RY45_00815 3250c508486f89168c32553c7842eda7 277 Pfam PF02311 AraC-like ligand binding domain 35 149 1.4E-17 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RY45_00815 3250c508486f89168c32553c7842eda7 277 Gene3D G3DSA:1.10.10.60 169 230 4.3E-16 T 14-10-2018 RY45_00815 3250c508486f89168c32553c7842eda7 277 Gene3D G3DSA:1.10.10.60 231 275 7.3E-14 T 14-10-2018 RY45_00815 3250c508486f89168c32553c7842eda7 277 SUPERFAMILY SSF51215 26 162 3.27E-18 T 14-10-2018 IPR037923 Transcription regulator HTH-like RY45_00815 3250c508486f89168c32553c7842eda7 277 SUPERFAMILY SSF46689 172 222 1.12E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_00815 3250c508486f89168c32553c7842eda7 277 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 225 266 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_00815 3250c508486f89168c32553c7842eda7 277 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 270 5.4E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_00815 3250c508486f89168c32553c7842eda7 277 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 254 5.4E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_00815 3250c508486f89168c32553c7842eda7 277 SUPERFAMILY SSF46689 225 273 8.06E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_00815 3250c508486f89168c32553c7842eda7 277 Pfam PF12833 Helix-turn-helix domain 194 272 1.7E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_00815 3250c508486f89168c32553c7842eda7 277 SMART SM00342 188 270 1.1E-26 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 SUPERFAMILY SSF53335 475 664 1.22E-26 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 Gene3D G3DSA:3.40.50.150 479 656 2.3E-28 T 14-10-2018 RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 SUPERFAMILY SSF56436 208 462 3.06E-54 T 14-10-2018 IPR016187 C-type lectin fold RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 TIGRFAM TIGR04344 ovoA_Nterm: 5-histidylcysteine sulfoxide synthase 20 461 3.7E-204 T 14-10-2018 IPR027577 5-histidylcysteine sulfoxide synthase RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 Pfam PF12867 DinB superfamily 44 174 2.0E-9 T 14-10-2018 IPR024775 DinB-like domain RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 Pfam PF03781 Sulfatase-modifying factor enzyme 1 210 460 3.0E-25 T 14-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 Pfam PF08241 Methyltransferase domain 518 642 6.0E-11 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 TIGRFAM TIGR04345 ovoA_Cterm: putative 4-mercaptohistidine N1-methyltranferase 475 715 1.1E-95 T 14-10-2018 IPR027625 Putative 4-mercaptohistidine N1-methyltranferase, OvoA C-terminal domain RY45_01340 b874b4ff91347d1a5eb3eb437c44533f 716 Gene3D G3DSA:3.90.1580.10 196 470 2.2E-25 T 14-10-2018 RY45_06780 02039310809c2d33664dcfe0f54a8526 322 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 3 312 6.7E-75 T 14-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 RY45_06780 02039310809c2d33664dcfe0f54a8526 322 Gene3D G3DSA:1.20.58.1130 9 205 1.5E-88 T 14-10-2018 RY45_06780 02039310809c2d33664dcfe0f54a8526 322 Pfam PF01699 Sodium/calcium exchanger protein 4 140 1.5E-23 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RY45_06780 02039310809c2d33664dcfe0f54a8526 322 Pfam PF01699 Sodium/calcium exchanger protein 174 315 2.8E-31 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RY45_06780 02039310809c2d33664dcfe0f54a8526 322 Gene3D G3DSA:1.20.1420.30 35 310 1.5E-88 T 14-10-2018 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 Gene3D G3DSA:3.40.30.60 365 507 2.0E-51 T 14-10-2018 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 697 3.2E-264 T 14-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 PIRSF PIRSF005419 8 700 2.0E-245 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 Gene3D G3DSA:1.10.490.80 600 697 9.4E-13 T 14-10-2018 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 37 50 8.4E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 141 157 8.4E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 241 255 8.4E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 160 178 8.4E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 190 207 8.4E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 74 93 8.4E-56 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 146 169 - T 14-10-2018 IPR025505 FHIPEP conserved site RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 Pfam PF00771 FHIPEP family 31 689 3.5E-269 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RY45_07265 7bc73cd619c9cfcd90112a6f1f80a548 700 Gene3D G3DSA:1.10.8.540 508 597 9.4E-26 T 14-10-2018 RY45_20325 3f9beb520385a08c6a23325ec30feb06 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 68 84 2.0E-8 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_20325 3f9beb520385a08c6a23325ec30feb06 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 34 50 2.0E-8 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_20325 3f9beb520385a08c6a23325ec30feb06 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 89 102 2.0E-8 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_20325 3f9beb520385a08c6a23325ec30feb06 104 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 12 102 2.2E-13 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_20325 3f9beb520385a08c6a23325ec30feb06 104 Pfam PF02049 Flagellar hook-basal body complex protein FliE 26 103 2.0E-22 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_20325 3f9beb520385a08c6a23325ec30feb06 104 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 10 104 13.87 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RY45_20220 03d833d36cc9cc82114a00b46c968f31 428 Pfam PF01973 Protein of unknown function DUF115 182 351 4.2E-37 T 14-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like RY45_09190 0c85e6738708b78102ef8176a26fff67 356 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 29 318 9.8E-50 T 14-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal RY45_09190 0c85e6738708b78102ef8176a26fff67 356 Gene3D G3DSA:3.60.60.10 26 346 4.9E-122 T 14-10-2018 RY45_09190 0c85e6738708b78102ef8176a26fff67 356 SUPERFAMILY SSF56235 29 332 2.7E-94 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_18285 7d4246fa2905d81b82b7d1d4e86862b2 229 SUPERFAMILY SSF52540 26 211 7.94E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18285 7d4246fa2905d81b82b7d1d4e86862b2 229 Gene3D G3DSA:3.40.50.300 3 219 3.1E-54 T 14-10-2018 RY45_18285 7d4246fa2905d81b82b7d1d4e86862b2 229 Pfam PF00005 ABC transporter 26 176 5.6E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_18285 7d4246fa2905d81b82b7d1d4e86862b2 229 SMART SM00382 31 224 1.1E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15055 5fd4662aafc4a3d811eef572446a53cc 397 Gene3D G3DSA:1.10.287.470 100 173 3.7E-114 T 14-10-2018 RY45_15055 5fd4662aafc4a3d811eef572446a53cc 397 SUPERFAMILY SSF111369 53 302 5.1E-85 T 14-10-2018 RY45_15055 5fd4662aafc4a3d811eef572446a53cc 397 Gene3D G3DSA:2.40.30.170 52 305 3.7E-114 T 14-10-2018 RY45_15055 5fd4662aafc4a3d811eef572446a53cc 397 Gene3D G3DSA:2.40.420.20 306 374 3.7E-114 T 14-10-2018 RY45_15055 5fd4662aafc4a3d811eef572446a53cc 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 294 5.3E-14 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_15055 5fd4662aafc4a3d811eef572446a53cc 397 Pfam PF00529 HlyD membrane-fusion protein of T1SS 309 362 8.0E-7 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_15055 5fd4662aafc4a3d811eef572446a53cc 397 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 376 8.2E-88 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_15055 5fd4662aafc4a3d811eef572446a53cc 397 Gene3D G3DSA:2.40.50.100 65 209 3.7E-114 T 14-10-2018 RY45_09145 a357aafd9428af07deda613dbbf8bc38 271 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 12 236 8.0E-113 T 14-10-2018 IPR022488 Polyphosphate kinase-2-related RY45_09145 a357aafd9428af07deda613dbbf8bc38 271 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 11 237 7.1E-117 T 14-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 RY45_09145 a357aafd9428af07deda613dbbf8bc38 271 Gene3D G3DSA:3.40.50.300 1 244 4.5E-99 T 14-10-2018 RY45_09145 a357aafd9428af07deda613dbbf8bc38 271 SUPERFAMILY SSF52540 43 232 3.8E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09145 a357aafd9428af07deda613dbbf8bc38 271 PIRSF PIRSF028756 1 266 2.8E-134 T 14-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 RY45_20990 808d003482cfe78f0566a53aa39412c0 180 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 4 172 2.2E-76 T 14-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 RY45_20990 808d003482cfe78f0566a53aa39412c0 180 Pfam PF13242 HAD-hyrolase-like 102 170 1.8E-11 T 14-10-2018 RY45_20990 808d003482cfe78f0566a53aa39412c0 180 SUPERFAMILY SSF56784 3 172 1.07E-49 T 14-10-2018 IPR036412 HAD-like superfamily RY45_20990 808d003482cfe78f0566a53aa39412c0 180 Gene3D G3DSA:3.40.50.1000 1 176 2.4E-59 T 14-10-2018 IPR023214 HAD superfamily RY45_20990 808d003482cfe78f0566a53aa39412c0 180 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 143 9.5E-40 T 14-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 RY45_20990 808d003482cfe78f0566a53aa39412c0 180 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 144 2.1E-43 T 14-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 RY45_20990 808d003482cfe78f0566a53aa39412c0 180 PIRSF PIRSF004682 1 178 3.8E-66 T 14-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 Gene3D G3DSA:1.10.730.20 656 945 7.2E-88 T 14-10-2018 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 656 1.0E-216 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 Pfam PF08264 Anticodon-binding domain of tRNA 701 855 2.0E-27 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 859 5.6E-292 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 SUPERFAMILY SSF50677 204 408 2.72E-51 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 Gene3D G3DSA:3.40.50.620 25 645 1.2E-230 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 944 21.412 T 14-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 SUPERFAMILY SSF47323 668 944 1.42E-76 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 SUPERFAMILY SSF52374 3 663 1.22E-133 T 14-10-2018 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 Pfam PF06827 Zinc finger found in FPG and IleRS 915 941 2.3E-6 T 14-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 Gene3D G3DSA:3.90.740.10 195 413 1.2E-230 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 241 264 2.9E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 406 421 2.9E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 2.9E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 542 555 2.9E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RY45_03870 5a56dc9e44faefce7db0f4ca353ac53a 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 577 586 2.9E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 Gene3D G3DSA:3.40.190.10 133 227 7.0E-67 T 14-10-2018 RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 SMART SM00062 48 271 1.3E-27 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 SUPERFAMILY SSF53955 249 452 7.78E-35 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 Pfam PF01464 Transglycosylase SLT domain 299 406 1.9E-22 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 15 478 47.875 T 14-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 49 270 7.1E-42 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 SUPERFAMILY SSF53850 44 270 5.58E-42 T 14-10-2018 RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 Gene3D G3DSA:3.40.190.10 42 266 7.0E-67 T 14-10-2018 RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 Gene3D G3DSA:1.10.530.10 287 472 1.1E-33 T 14-10-2018 RY45_09620 d6dc950c03a245cbd28855a4c1aeb003 496 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 312 340 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RY45_02355 1b57b5001ed620d55892946874bc5c8d 484 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_02355 1b57b5001ed620d55892946874bc5c8d 484 Gene3D G3DSA:3.30.1360.60 3 78 2.4E-19 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_02355 1b57b5001ed620d55892946874bc5c8d 484 SUPERFAMILY SSF55604 9 80 1.31E-18 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_02355 1b57b5001ed620d55892946874bc5c8d 484 Pfam PF00367 phosphotransferase system, EIIB 11 39 5.5E-12 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_02355 1b57b5001ed620d55892946874bc5c8d 484 Pfam PF02378 Phosphotransferase system, EIIC 129 411 4.5E-30 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 SUPERFAMILY SSF51735 6 249 1.93E-84 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 188 0.0017 T 14-10-2018 RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.5E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.5E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 5.5E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 5.5E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 5.5E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.5E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 6.0E-69 T 14-10-2018 RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.7E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.7E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.7E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_21675 d494e8f73edcfe1f104a2420dca5b3af 249 Gene3D G3DSA:3.40.50.720 1 249 8.8E-84 T 14-10-2018 RY45_07395 33b2d8ffa9fc1d187c7a1cdaefd45555 403 SUPERFAMILY SSF53335 117 402 1.06E-65 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_07395 33b2d8ffa9fc1d187c7a1cdaefd45555 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 384 401 3.6E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_07395 33b2d8ffa9fc1d187c7a1cdaefd45555 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 347 363 3.6E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_07395 33b2d8ffa9fc1d187c7a1cdaefd45555 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 297 309 3.6E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_07395 33b2d8ffa9fc1d187c7a1cdaefd45555 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 230 240 3.6E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_07395 33b2d8ffa9fc1d187c7a1cdaefd45555 403 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 201 215 3.6E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RY45_07395 33b2d8ffa9fc1d187c7a1cdaefd45555 403 Gene3D G3DSA:3.40.50.150 122 401 1.1E-76 T 14-10-2018 RY45_07395 33b2d8ffa9fc1d187c7a1cdaefd45555 403 Pfam PF01189 16S rRNA methyltransferase RsmB/F 219 387 3.5E-45 T 14-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 RY45_02680 5e722dcdf5751d68c2da098452eee99f 104 ProSitePatterns PS01344 Frataxin family signature. 48 62 - T 14-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_02680 5e722dcdf5751d68c2da098452eee99f 104 Pfam PF01491 Frataxin-like domain 1 100 3.6E-25 T 14-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_02680 5e722dcdf5751d68c2da098452eee99f 104 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 3 103 2.1E-40 T 14-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_02680 5e722dcdf5751d68c2da098452eee99f 104 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 103 25.611 T 14-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_02680 5e722dcdf5751d68c2da098452eee99f 104 SMART SM01219 1 104 1.8E-49 T 14-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_02680 5e722dcdf5751d68c2da098452eee99f 104 SUPERFAMILY SSF55387 1 103 2.09E-33 T 14-10-2018 RY45_02680 5e722dcdf5751d68c2da098452eee99f 104 Gene3D G3DSA:3.30.920.10 1 104 8.8E-37 T 14-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RY45_06100 0d3c9b20dc142940a6334cd60d425a88 102 Pfam PF01722 BolA-like protein 9 82 5.7E-30 T 14-10-2018 IPR002634 BolA protein RY45_06100 0d3c9b20dc142940a6334cd60d425a88 102 PIRSF PIRSF003113 1 97 1.9E-35 T 14-10-2018 IPR002634 BolA protein RY45_06100 0d3c9b20dc142940a6334cd60d425a88 102 SUPERFAMILY SSF82657 2 87 1.31E-30 T 14-10-2018 IPR036065 BolA-like superfamily RY45_06100 0d3c9b20dc142940a6334cd60d425a88 102 Gene3D G3DSA:3.30.300.90 1 88 6.1E-35 T 14-10-2018 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 Gene3D G3DSA:1.20.1480.50 316 408 4.0E-8 T 14-10-2018 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 Gene3D G3DSA:3.30.450.20 415 525 4.8E-5 T 14-10-2018 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 SUPERFAMILY SSF55874 637 788 9.54E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 Pfam PF00512 His Kinase A (phospho-acceptor) domain 573 636 8.1E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 SMART SM00304 352 404 2.3E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 SUPERFAMILY SSF158472 352 402 1.15E-5 T 14-10-2018 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 Gene3D G3DSA:3.30.565.10 642 796 1.9E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 Pfam PF13426 PAS domain 417 515 4.3E-8 T 14-10-2018 IPR000014 PAS domain RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 683 787 1.4E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 SUPERFAMILY SSF47384 567 636 2.16E-8 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 SUPERFAMILY SSF55785 404 515 3.14E-7 T 14-10-2018 IPR035965 PAS domain superfamily RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 SMART SM00387 682 791 3.8E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 PIRSF PIRSF037119 6 792 5.9E-235 T 14-10-2018 IPR017116 Signal transduction histidine kinase, PgtB RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 Gene3D G3DSA:1.10.287.130 547 634 1.7E-16 T 14-10-2018 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 722 736 1.4E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 740 750 1.4E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 751 769 1.4E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 SMART SM00388 571 639 7.6E-6 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_00155 594fe1824b3a8b1ddc9f93a469447a4d 810 Pfam PF00672 HAMP domain 352 400 1.2E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 317 337 4.1E-6 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 300 317 4.1E-6 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 SUPERFAMILY SSF46689 281 336 1.39E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 SMART SM00382 28 175 3.1E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 334 2.2E-161 T 14-10-2018 IPR014317 Transcription activator PspF RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 Gene3D G3DSA:1.10.8.60 180 264 1.6E-25 T 14-10-2018 RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 Pfam PF00158 Sigma-54 interaction domain 8 171 1.7E-60 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 SUPERFAMILY SSF52540 8 245 9.44E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 Gene3D G3DSA:1.10.10.60 275 337 2.4E-8 T 14-10-2018 RY45_10090 b55bc138d48912fd26ad3256ae14c344 344 Gene3D G3DSA:3.40.50.300 1 179 7.6E-59 T 14-10-2018 RY45_05310 27d54686da42b9b8d4df963413ada54a 289 SUPERFAMILY SSF103481 177 282 5.49E-6 T 14-10-2018 RY45_05310 27d54686da42b9b8d4df963413ada54a 289 Pfam PF00892 EamA-like transporter family 149 272 2.2E-12 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_05310 27d54686da42b9b8d4df963413ada54a 289 Pfam PF00892 EamA-like transporter family 2 128 1.8E-11 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_05310 27d54686da42b9b8d4df963413ada54a 289 SUPERFAMILY SSF103481 31 131 6.67E-9 T 14-10-2018 RY45_21775 b846c886afbc0019a381e9062daeaced 418 SMART SM00919 166 402 1.1E-135 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RY45_21775 b846c886afbc0019a381e9062daeaced 418 SUPERFAMILY SSF53223 13 164 2.95E-51 T 14-10-2018 RY45_21775 b846c886afbc0019a381e9062daeaced 418 Gene3D G3DSA:3.40.50.10380 2 163 5.1E-67 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RY45_21775 b846c886afbc0019a381e9062daeaced 418 Gene3D G3DSA:3.40.50.720 164 416 5.7E-80 T 14-10-2018 RY45_21775 b846c886afbc0019a381e9062daeaced 418 PIRSF PIRSF000106 47 416 4.7E-69 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RY45_21775 b846c886afbc0019a381e9062daeaced 418 Pfam PF03949 Malic enzyme, NAD binding domain 168 358 4.3E-23 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RY45_21775 b846c886afbc0019a381e9062daeaced 418 SMART SM01274 21 154 4.1E-73 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RY45_21775 b846c886afbc0019a381e9062daeaced 418 SUPERFAMILY SSF51735 166 411 2.83E-79 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21775 b846c886afbc0019a381e9062daeaced 418 Pfam PF00390 Malic enzyme, N-terminal domain 23 119 1.4E-20 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RY45_21775 b846c886afbc0019a381e9062daeaced 418 ProSitePatterns PS00331 Malic enzymes signature. 162 178 - T 14-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RY45_12170 20971646ad89a6dfab69ca013c95e8a9 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.3E-112 T 14-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 RY45_12170 20971646ad89a6dfab69ca013c95e8a9 270 Pfam PF13614 AAA domain 3 157 1.1E-21 T 14-10-2018 IPR025669 AAA domain RY45_12170 20971646ad89a6dfab69ca013c95e8a9 270 SUPERFAMILY SSF52540 1 268 2.28E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12170 20971646ad89a6dfab69ca013c95e8a9 270 PIRSF PIRSF003092 1 270 7.6E-99 T 14-10-2018 IPR025501 ATP binding protein MinD RY45_12170 20971646ad89a6dfab69ca013c95e8a9 270 Gene3D G3DSA:3.40.50.300 1 260 4.7E-76 T 14-10-2018 RY45_09130 c459b0d0780c872b9d3c5877edee78b1 550 Gene3D G3DSA:2.40.430.10 124 227 1.5E-32 T 14-10-2018 RY45_09130 c459b0d0780c872b9d3c5877edee78b1 550 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 105 295 2.1E-52 T 14-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain RY45_09130 c459b0d0780c872b9d3c5877edee78b1 550 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 332 537 4.7E-18 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_09130 c459b0d0780c872b9d3c5877edee78b1 550 Gene3D G3DSA:3.10.650.10 103 304 1.5E-32 T 14-10-2018 RY45_09130 c459b0d0780c872b9d3c5877edee78b1 550 Gene3D G3DSA:1.10.3720.10 305 548 1.6E-69 T 14-10-2018 IPR035906 MetI-like superfamily RY45_09130 c459b0d0780c872b9d3c5877edee78b1 550 SUPERFAMILY SSF160964 19 295 9.68E-67 T 14-10-2018 RY45_09130 c459b0d0780c872b9d3c5877edee78b1 550 Gene3D G3DSA:1.20.58.370 11 100 5.0E-36 T 14-10-2018 IPR035277 MalF, N-terminal RY45_09130 c459b0d0780c872b9d3c5877edee78b1 550 SUPERFAMILY SSF161098 296 538 1.83E-59 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03905 980d3f1ddea5af40e159497a9302716a 151 Pfam PF13681 Type IV pilus assembly protein PilX C-term 82 150 2.5E-16 T 14-10-2018 IPR025205 PilX/PilW C-terminal domain RY45_03905 980d3f1ddea5af40e159497a9302716a 151 Pfam PF14341 PilX N-terminal 2 49 1.7E-14 T 14-10-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain RY45_14195 2fc64dc87a73bdbc285b4d4b8b62317c 442 Pfam PF02321 Outer membrane efflux protein 240 424 2.0E-26 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_14195 2fc64dc87a73bdbc285b4d4b8b62317c 442 Pfam PF02321 Outer membrane efflux protein 25 218 8.2E-24 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_14195 2fc64dc87a73bdbc285b4d4b8b62317c 442 SUPERFAMILY SSF56954 1 427 2.22E-81 T 14-10-2018 RY45_14195 2fc64dc87a73bdbc285b4d4b8b62317c 442 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 439 1.5E-98 T 14-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 RY45_14195 2fc64dc87a73bdbc285b4d4b8b62317c 442 Gene3D G3DSA:1.20.1600.10 22 436 1.7E-76 T 14-10-2018 RY45_09220 7d660ccd1f215d867c9f49ec8f1efc03 246 Gene3D G3DSA:1.10.3720.10 3 243 1.4E-50 T 14-10-2018 IPR035906 MetI-like superfamily RY45_09220 7d660ccd1f215d867c9f49ec8f1efc03 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 238 3.6E-22 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_09220 7d660ccd1f215d867c9f49ec8f1efc03 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 75 9.5E-17 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_09220 7d660ccd1f215d867c9f49ec8f1efc03 246 SUPERFAMILY SSF161098 10 227 7.98E-41 T 14-10-2018 IPR035906 MetI-like superfamily RY45_05295 e5ab91a43786f5de4c3b638edbbdc215 275 SUPERFAMILY SSF53167 7 272 1.06E-81 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RY45_05295 e5ab91a43786f5de4c3b638edbbdc215 275 Gene3D G3DSA:3.40.50.1580 2 273 1.4E-99 T 14-10-2018 RY45_05295 e5ab91a43786f5de4c3b638edbbdc215 275 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 76 117 - T 14-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 RY45_05295 e5ab91a43786f5de4c3b638edbbdc215 275 PIRSF PIRSF000477 1 273 7.7E-99 T 14-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 RY45_05295 e5ab91a43786f5de4c3b638edbbdc215 275 Pfam PF01048 Phosphorylase superfamily 25 271 4.3E-41 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RY45_05295 e5ab91a43786f5de4c3b638edbbdc215 275 TIGRFAM TIGR01699 XAPA: xanthosine phosphorylase 24 271 7.0E-123 T 14-10-2018 IPR010943 Xanthosine phosphorylase GO:0004731|GO:0005737|GO:0055086 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RY45_05295 e5ab91a43786f5de4c3b638edbbdc215 275 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 24 271 8.1E-95 T 14-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 Pfam PF08245 Mur ligase middle domain 110 313 1.3E-46 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 SUPERFAMILY SSF53244 334 488 1.14E-49 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 419 8.8E-23 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 Gene3D G3DSA:3.40.1390.10 2 100 3.6E-27 T 14-10-2018 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 486 1.1E-166 T 14-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 Pfam PF01225 Mur ligase family, catalytic domain 25 98 1.6E-14 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 486 33.991 T 14-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 Gene3D G3DSA:3.90.190.20 343 492 4.8E-57 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 SUPERFAMILY SSF63418 6 99 7.46E-24 T 14-10-2018 IPR035911 MurE/MurF, N-terminal RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 SUPERFAMILY SSF53623 101 333 6.02E-73 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_20135 765373fc7ff73b199823321e8ae2b24c 494 Gene3D G3DSA:3.40.1190.10 101 337 7.2E-79 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_19330 faa3540b2f8a71ba27180bd71f1d73ab 302 TIGRFAM TIGR00688 rarD: protein RarD 10 257 3.5E-43 T 14-10-2018 IPR004626 RarD protein GO:0005887 RY45_19330 faa3540b2f8a71ba27180bd71f1d73ab 302 Pfam PF00892 EamA-like transporter family 8 141 1.6E-10 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_19330 faa3540b2f8a71ba27180bd71f1d73ab 302 Pfam PF00892 EamA-like transporter family 182 281 3.3E-7 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_19330 faa3540b2f8a71ba27180bd71f1d73ab 302 SUPERFAMILY SSF103481 205 282 9.29E-10 T 14-10-2018 RY45_19330 faa3540b2f8a71ba27180bd71f1d73ab 302 SUPERFAMILY SSF103481 45 143 3.01E-12 T 14-10-2018 RY45_11350 d3361cbcfce377bf229d5837680f7893 251 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 7.4E-15 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_11350 d3361cbcfce377bf229d5837680f7893 251 SMART SM00100 30 151 1.5E-19 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_11350 d3361cbcfce377bf229d5837680f7893 251 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 14-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 RY45_11350 d3361cbcfce377bf229d5837680f7893 251 Gene3D G3DSA:1.10.10.10 165 247 1.1E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_11350 d3361cbcfce377bf229d5837680f7893 251 SUPERFAMILY SSF51206 23 162 5.11E-31 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like RY45_11350 d3361cbcfce377bf229d5837680f7893 251 SMART SM00419 187 235 1.6E-17 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RY45_11350 d3361cbcfce377bf229d5837680f7893 251 SUPERFAMILY SSF46785 165 242 7.64E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_11350 d3361cbcfce377bf229d5837680f7893 251 Pfam PF13545 Crp-like helix-turn-helix domain 168 239 3.0E-17 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RY45_11350 d3361cbcfce377bf229d5837680f7893 251 Gene3D G3DSA:2.60.120.10 43 164 2.2E-47 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_11350 d3361cbcfce377bf229d5837680f7893 251 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 6.0E-13 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RY45_11350 d3361cbcfce377bf229d5837680f7893 251 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 6.0E-13 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RY45_08290 c708d408b9e0f58043b939956d5edfc0 404 SUPERFAMILY SSF46785 11 75 1.68E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08290 c708d408b9e0f58043b939956d5edfc0 404 SUPERFAMILY SSF53067 85 392 1.92E-54 T 14-10-2018 RY45_08290 c708d408b9e0f58043b939956d5edfc0 404 Gene3D G3DSA:1.10.10.10 2 78 2.8E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_08290 c708d408b9e0f58043b939956d5edfc0 404 Pfam PF00480 ROK family 89 389 1.7E-73 T 14-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RY45_08290 c708d408b9e0f58043b939956d5edfc0 404 Gene3D G3DSA:3.30.420.40 90 385 1.6E-93 T 14-10-2018 RY45_08290 c708d408b9e0f58043b939956d5edfc0 404 Gene3D G3DSA:3.30.420.40 207 375 1.6E-93 T 14-10-2018 RY45_11000 9246331259f55489143043ed254d26ab 168 SUPERFAMILY SSF56420 2 164 1.07E-53 T 14-10-2018 IPR036821 Peptide deformylase superfamily RY45_11000 9246331259f55489143043ed254d26ab 168 PIRSF PIRSF004749 1 167 1.1E-48 T 14-10-2018 IPR023635 Peptide deformylase RY45_11000 9246331259f55489143043ed254d26ab 168 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 3 160 1.8E-45 T 14-10-2018 IPR023635 Peptide deformylase RY45_11000 9246331259f55489143043ed254d26ab 168 PRINTS PR01576 Peptide deformylase signature 89 100 5.5E-28 T 14-10-2018 IPR023635 Peptide deformylase RY45_11000 9246331259f55489143043ed254d26ab 168 PRINTS PR01576 Peptide deformylase signature 120 149 5.5E-28 T 14-10-2018 IPR023635 Peptide deformylase RY45_11000 9246331259f55489143043ed254d26ab 168 PRINTS PR01576 Peptide deformylase signature 33 62 5.5E-28 T 14-10-2018 IPR023635 Peptide deformylase RY45_11000 9246331259f55489143043ed254d26ab 168 PRINTS PR01576 Peptide deformylase signature 101 119 5.5E-28 T 14-10-2018 IPR023635 Peptide deformylase RY45_11000 9246331259f55489143043ed254d26ab 168 Pfam PF01327 Polypeptide deformylase 3 151 2.3E-44 T 14-10-2018 IPR023635 Peptide deformylase RY45_11000 9246331259f55489143043ed254d26ab 168 Hamap MF_00163 Peptide deformylase [def]. 2 162 27.953 T 14-10-2018 IPR023635 Peptide deformylase RY45_11000 9246331259f55489143043ed254d26ab 168 Gene3D G3DSA:3.90.45.10 1 167 2.7E-60 T 14-10-2018 IPR036821 Peptide deformylase superfamily RY45_11675 a04a68aa3279fdf7aff6f434b310f522 193 Pfam PF00692 dUTPase 79 184 4.7E-7 T 14-10-2018 IPR029054 dUTPase-like RY45_11675 a04a68aa3279fdf7aff6f434b310f522 193 Gene3D G3DSA:2.70.40.10 1 162 1.5E-49 T 14-10-2018 IPR036157 dUTPase-like superfamily RY45_11675 a04a68aa3279fdf7aff6f434b310f522 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 32.761 T 14-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 RY45_11675 a04a68aa3279fdf7aff6f434b310f522 193 SUPERFAMILY SSF51283 1 193 2.49E-58 T 14-10-2018 IPR036157 dUTPase-like superfamily RY45_11675 a04a68aa3279fdf7aff6f434b310f522 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 2.1E-63 T 14-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 RY45_04820 a6103d89a9f1ff9bd088215796fab319 218 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 215 5.0E-58 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_04820 a6103d89a9f1ff9bd088215796fab319 218 Gene3D G3DSA:3.30.2350.10 3 215 5.2E-69 T 14-10-2018 RY45_04820 a6103d89a9f1ff9bd088215796fab319 218 SUPERFAMILY SSF55120 7 215 1.44E-62 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_04820 a6103d89a9f1ff9bd088215796fab319 218 Pfam PF00849 RNA pseudouridylate synthase 20 165 5.4E-26 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 SUPERFAMILY SSF109604 306 493 3.25E-48 T 14-10-2018 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 Gene3D G3DSA:3.30.420.150 111 288 3.7E-80 T 14-10-2018 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 SUPERFAMILY SSF53067 131 301 3.76E-41 T 14-10-2018 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 Pfam PF02541 Ppx/GppA phosphatase family 20 300 2.1E-82 T 14-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 Gene3D G3DSA:3.30.420.40 8 296 3.7E-80 T 14-10-2018 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 PIRSF PIRSF001267 1 496 1.2E-173 T 14-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 1 494 54.32 T 14-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 Gene3D G3DSA:1.10.3210.10 303 495 3.0E-51 T 14-10-2018 RY45_00755 726a6a8c125d957ee14e4811ca30c3d3 496 SUPERFAMILY SSF53067 6 124 1.17E-33 T 14-10-2018 RY45_21365 b7d1c5e02faebe71515cb09733c3e695 577 SUPERFAMILY SSF58104 267 576 2.35E-72 T 14-10-2018 RY45_21365 b7d1c5e02faebe71515cb09733c3e695 577 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 363 542 3.8E-42 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_21365 b7d1c5e02faebe71515cb09733c3e695 577 SMART SM00283 314 575 8.1E-67 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_21365 b7d1c5e02faebe71515cb09733c3e695 577 SMART SM00304 245 299 7.8E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_21365 b7d1c5e02faebe71515cb09733c3e695 577 Gene3D G3DSA:1.10.287.950 246 577 1.4E-70 T 14-10-2018 RY45_10805 51c2d76077f3b56cb0a0c1446452c2d2 372 SUPERFAMILY SSF56796 6 360 1.26E-80 T 14-10-2018 RY45_10805 51c2d76077f3b56cb0a0c1446452c2d2 372 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 351 1.2E-59 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RY45_10805 51c2d76077f3b56cb0a0c1446452c2d2 372 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 153 181 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_10805 51c2d76077f3b56cb0a0c1446452c2d2 372 PIRSF PIRSF000112 1 363 1.5E-81 T 14-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 RY45_10805 51c2d76077f3b56cb0a0c1446452c2d2 372 Gene3D G3DSA:3.40.50.1970 6 162 4.3E-40 T 14-10-2018 RY45_10805 51c2d76077f3b56cb0a0c1446452c2d2 372 Gene3D G3DSA:1.20.1090.10 163 370 4.6E-65 T 14-10-2018 RY45_01695 9835ea916cbd3eeec9e4b22178735763 225 SUPERFAMILY SSF53335 2 181 1.7E-32 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_01695 9835ea916cbd3eeec9e4b22178735763 225 Pfam PF01564 Spermine/spermidine synthase domain 72 175 2.4E-6 T 14-10-2018 RY45_01695 9835ea916cbd3eeec9e4b22178735763 225 Gene3D G3DSA:3.40.50.150 22 200 6.5E-33 T 14-10-2018 RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 Gene3D G3DSA:3.40.50.720 180 318 1.5E-158 T 14-10-2018 RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 8 375 5.4E-227 T 14-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 SUPERFAMILY SSF51735 166 340 3.84E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 Gene3D G3DSA:3.90.180.10 12 370 1.5E-158 T 14-10-2018 RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 Pfam PF00107 Zinc-binding dehydrogenase 203 334 8.8E-26 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 SUPERFAMILY SSF50129 5 191 3.2E-77 T 14-10-2018 IPR011032 GroES-like superfamily RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 SUPERFAMILY SSF50129 325 375 2.83E-13 T 14-10-2018 IPR011032 GroES-like superfamily RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 160 2.6E-26 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 SMART SM00829 18 373 0.0015 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RY45_01355 9600a8de0ebd687e21c5e51fc4c99ede 375 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 14-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RY45_10415 243101d1863ec13e975f72a823636802 586 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 60 391 8.6E-78 T 14-10-2018 IPR003776 YcaO-like domain RY45_10415 243101d1863ec13e975f72a823636802 586 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 12 404 4.4E-152 T 14-10-2018 IPR003776 YcaO-like domain RY45_10415 243101d1863ec13e975f72a823636802 586 Gene3D G3DSA:1.10.490.140 162 268 3.8E-5 T 14-10-2018 RY45_20085 bbc9fee04c36734d28056acad673055a 307 Gene3D G3DSA:3.30.230.20 1 128 2.3E-51 T 14-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RY45_20085 bbc9fee04c36734d28056acad673055a 307 Gene3D G3DSA:3.30.1700.10 129 307 1.1E-66 T 14-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RY45_20085 bbc9fee04c36734d28056acad673055a 307 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 277 2.6E-108 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RY45_20085 bbc9fee04c36734d28056acad673055a 307 SUPERFAMILY SSF54211 135 279 3.79E-51 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_20085 bbc9fee04c36734d28056acad673055a 307 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 281 45.782 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RY45_20085 bbc9fee04c36734d28056acad673055a 307 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 293 8.4E-133 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RY45_20085 bbc9fee04c36734d28056acad673055a 307 SUPERFAMILY SSF54211 3 126 1.21E-42 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_11470 76f396ce437e8d21fc11b213a1c877d5 425 Gene3D G3DSA:1.10.443.10 197 408 1.1E-26 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_11470 76f396ce437e8d21fc11b213a1c877d5 425 Pfam PF00589 Phage integrase family 212 406 1.1E-12 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_11470 76f396ce437e8d21fc11b213a1c877d5 425 Gene3D G3DSA:1.10.150.130 44 190 8.0E-12 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal RY45_11470 76f396ce437e8d21fc11b213a1c877d5 425 SUPERFAMILY SSF56349 45 413 5.89E-27 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_12780 df67f13cd88adf4ef5329863aeb0863e 362 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 361 1.3E-150 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RY45_12780 df67f13cd88adf4ef5329863aeb0863e 362 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 3 361 50.511 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RY45_12780 df67f13cd88adf4ef5329863aeb0863e 362 SUPERFAMILY SSF53383 3 360 6.2E-111 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_12780 df67f13cd88adf4ef5329863aeb0863e 362 PIRSF PIRSF000525 1 362 5.9E-145 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RY45_12780 df67f13cd88adf4ef5329863aeb0863e 362 Gene3D G3DSA:3.90.1150.10 260 362 1.7E-40 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_12780 df67f13cd88adf4ef5329863aeb0863e 362 Pfam PF00266 Aminotransferase class-V 5 350 6.7E-51 T 14-10-2018 IPR000192 Aminotransferase class V domain RY45_12780 df67f13cd88adf4ef5329863aeb0863e 362 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 208 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RY45_12780 df67f13cd88adf4ef5329863aeb0863e 362 Gene3D G3DSA:3.40.640.10 17 259 4.8E-83 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_13585 b13834aec2884e553b0c8b3ab7a93e46 556 SMART SM00065 224 361 8.6E-7 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_13585 b13834aec2884e553b0c8b3ab7a93e46 556 Pfam PF06580 Histidine kinase 367 444 5.6E-25 T 14-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RY45_13585 b13834aec2884e553b0c8b3ab7a93e46 556 SUPERFAMILY SSF55874 422 552 3.16E-15 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_13585 b13834aec2884e553b0c8b3ab7a93e46 556 Gene3D G3DSA:3.30.565.10 417 554 2.5E-13 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_13585 b13834aec2884e553b0c8b3ab7a93e46 556 SUPERFAMILY SSF55781 226 357 7.2E-9 T 14-10-2018 RY45_13585 b13834aec2884e553b0c8b3ab7a93e46 556 Pfam PF07694 5TMR of 5TMR-LYT 26 193 9.3E-59 T 14-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 RY45_03465 3cd9d6bc3b427fd75cc72627775d8d0d 191 SUPERFAMILY SSF53474 2 162 1.73E-31 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_03465 3cd9d6bc3b427fd75cc72627775d8d0d 191 Gene3D G3DSA:3.40.50.1820 1 172 6.1E-49 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_03465 3cd9d6bc3b427fd75cc72627775d8d0d 191 Pfam PF06821 Serine hydrolase 4 164 3.6E-50 T 14-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 RY45_06745 0e10a2620710ff764ae02c38ff1adf83 375 SUPERFAMILY SSF161098 65 133 5.49E-13 T 14-10-2018 IPR035906 MetI-like superfamily RY45_06745 0e10a2620710ff764ae02c38ff1adf83 375 Gene3D G3DSA:1.10.3720.10 161 371 1.8E-35 T 14-10-2018 IPR035906 MetI-like superfamily RY45_06745 0e10a2620710ff764ae02c38ff1adf83 375 Gene3D G3DSA:1.10.3720.10 53 155 1.5E-14 T 14-10-2018 IPR035906 MetI-like superfamily RY45_06745 0e10a2620710ff764ae02c38ff1adf83 375 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 205 371 3.0E-14 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_06745 0e10a2620710ff764ae02c38ff1adf83 375 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 66 128 3.4E-18 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_06745 0e10a2620710ff764ae02c38ff1adf83 375 SUPERFAMILY SSF161098 167 356 2.09E-27 T 14-10-2018 IPR035906 MetI-like superfamily RY45_12505 a853b3378ec3922eb6712842c08647a2 318 SUPERFAMILY SSF51569 9 295 9.89E-70 T 14-10-2018 RY45_12505 a853b3378ec3922eb6712842c08647a2 318 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 238 247 - T 14-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 RY45_12505 a853b3378ec3922eb6712842c08647a2 318 Pfam PF00682 HMGL-like 11 285 2.2E-50 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RY45_12505 a853b3378ec3922eb6712842c08647a2 318 Gene3D G3DSA:3.20.20.70 7 305 7.8E-125 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_06205 549897a9661675f5d843cd076b495654 756 Gene3D G3DSA:1.25.40.10 160 287 6.8E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_06205 549897a9661675f5d843cd076b495654 756 Gene3D G3DSA:1.25.40.10 288 484 1.7E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_06205 549897a9661675f5d843cd076b495654 756 SMART SM00028 368 401 43.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_06205 549897a9661675f5d843cd076b495654 756 SMART SM00028 85 118 9.4 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_06205 549897a9661675f5d843cd076b495654 756 SMART SM00028 328 361 420.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_06205 549897a9661675f5d843cd076b495654 756 SMART SM00028 288 321 22.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_06205 549897a9661675f5d843cd076b495654 756 SUPERFAMILY SSF48452 323 440 3.32E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_06205 549897a9661675f5d843cd076b495654 756 SUPERFAMILY SSF48452 176 354 9.1E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_04300 6d21a29c495f66b5245a87a0baa63c5a 386 SUPERFAMILY SSF111369 53 308 1.44E-25 T 14-10-2018 RY45_04300 6d21a29c495f66b5245a87a0baa63c5a 386 Gene3D G3DSA:2.40.420.20 45 367 1.2E-89 T 14-10-2018 RY45_04300 6d21a29c495f66b5245a87a0baa63c5a 386 Gene3D G3DSA:2.40.30.170 49 311 1.2E-89 T 14-10-2018 RY45_04300 6d21a29c495f66b5245a87a0baa63c5a 386 Gene3D G3DSA:2.40.50.100 60 222 1.2E-89 T 14-10-2018 RY45_04300 6d21a29c495f66b5245a87a0baa63c5a 386 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 53 304 4.8E-16 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RY45_04300 6d21a29c495f66b5245a87a0baa63c5a 386 Gene3D G3DSA:1.10.287.470 94 185 1.2E-89 T 14-10-2018 RY45_04300 6d21a29c495f66b5245a87a0baa63c5a 386 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 369 4.0E-51 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_02765 0316497208980ce64bdf1ca28d8fc800 412 Pfam PF11871 Domain of unknown function (DUF3391) 4 135 2.6E-31 T 14-10-2018 IPR021812 Protein of unknown function DUF3391 RY45_02765 0316497208980ce64bdf1ca28d8fc800 412 Pfam PF01966 HD domain 169 288 7.7E-11 T 14-10-2018 IPR006674 HD domain RY45_02765 0316497208980ce64bdf1ca28d8fc800 412 Gene3D G3DSA:1.10.3210.10 25 325 3.9E-53 T 14-10-2018 RY45_02765 0316497208980ce64bdf1ca28d8fc800 412 SUPERFAMILY SSF109604 164 324 2.34E-27 T 14-10-2018 RY45_15660 9189330cccce9f8c2e6e937531e94648 373 SUPERFAMILY SSF53901 3 372 1.92E-53 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_15660 9189330cccce9f8c2e6e937531e94648 373 Gene3D G3DSA:3.40.47.10 1 214 7.4E-59 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_15660 9189330cccce9f8c2e6e937531e94648 373 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 215 4.7E-19 T 14-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_15660 9189330cccce9f8c2e6e937531e94648 373 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site RY45_15660 9189330cccce9f8c2e6e937531e94648 373 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 282 370 1.7E-21 T 14-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_15660 9189330cccce9f8c2e6e937531e94648 373 Gene3D G3DSA:3.40.47.10 219 372 3.1E-38 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_13680 2883559c38f3d1fcfb71883cc9c5eb48 210 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 195 25.858 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 RY45_13680 2883559c38f3d1fcfb71883cc9c5eb48 210 Pfam PF04205 FMN-binding domain 101 190 2.7E-19 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 RY45_13680 2883559c38f3d1fcfb71883cc9c5eb48 210 SMART SM00900 101 193 7.9E-35 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 RY45_13680 2883559c38f3d1fcfb71883cc9c5eb48 210 PIRSF PIRSF006091 1 206 2.9E-76 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 RY45_13680 2883559c38f3d1fcfb71883cc9c5eb48 210 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 191 7.9E-62 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 RY45_11510 37675950648bb39c33b83428a5a5a2ef 474 SUPERFAMILY SSF52777 17 143 5.78E-13 T 14-10-2018 RY45_11510 37675950648bb39c33b83428a5a5a2ef 474 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 8 268 4.3E-38 T 14-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RY45_11510 37675950648bb39c33b83428a5a5a2ef 474 Gene3D G3DSA:3.30.559.10 16 177 5.3E-10 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RY45_11510 37675950648bb39c33b83428a5a5a2ef 474 SUPERFAMILY SSF52777 256 432 5.67E-6 T 14-10-2018 RY45_11510 37675950648bb39c33b83428a5a5a2ef 474 Pfam PF06974 Protein of unknown function (DUF1298) 310 451 3.5E-40 T 14-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RY45_11510 37675950648bb39c33b83428a5a5a2ef 474 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 8 452 3.1E-115 T 14-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RY45_11510 37675950648bb39c33b83428a5a5a2ef 474 Gene3D G3DSA:3.30.559.30 178 280 5.3E-10 T 14-10-2018 RY45_07960 e6545f7b99b21959254fee526b4cc475 162 Gene3D G3DSA:2.40.280.10 7 135 4.0E-44 T 14-10-2018 IPR023620 Small protein B RY45_07960 e6545f7b99b21959254fee526b4cc475 162 SUPERFAMILY SSF74982 8 139 1.31E-48 T 14-10-2018 IPR023620 Small protein B RY45_07960 e6545f7b99b21959254fee526b4cc475 162 Pfam PF01668 SmpB protein 15 158 4.4E-56 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 RY45_07960 e6545f7b99b21959254fee526b4cc475 162 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 14-10-2018 IPR020081 SsrA-binding protein, conserved site RY45_07960 e6545f7b99b21959254fee526b4cc475 162 Hamap MF_00023 SsrA-binding protein [smpB]. 1 162 70.705 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 RY45_07960 e6545f7b99b21959254fee526b4cc475 162 TIGRFAM TIGR00086 smpB: SsrA-binding protein 15 157 1.0E-53 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 RY45_07960 e6545f7b99b21959254fee526b4cc475 162 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 15 139 3.0E-50 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 RY45_05460 edd4f2ca6945ae0923655c2d5becc374 326 SUPERFAMILY SSF53448 7 226 2.08E-39 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_05460 edd4f2ca6945ae0923655c2d5becc374 326 Pfam PF00535 Glycosyl transferase family 2 10 171 8.7E-33 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RY45_05460 edd4f2ca6945ae0923655c2d5becc374 326 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 1 325 63.514 T 14-10-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 RY45_05460 edd4f2ca6945ae0923655c2d5becc374 326 Gene3D G3DSA:3.90.550.10 2 234 3.4E-42 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_16065 c4f79cf2cb38cd6cbdc7a699987128ff 265 SMART SM00342 171 252 5.3E-23 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_16065 c4f79cf2cb38cd6cbdc7a699987128ff 265 Gene3D G3DSA:1.10.10.60 152 258 4.9E-21 T 14-10-2018 RY45_16065 c4f79cf2cb38cd6cbdc7a699987128ff 265 Pfam PF12833 Helix-turn-helix domain 178 253 4.4E-16 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_16065 c4f79cf2cb38cd6cbdc7a699987128ff 265 SUPERFAMILY SSF46689 206 254 2.24E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 Gene3D G3DSA:3.90.10.10 244 321 9.7E-6 T 14-10-2018 RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 SUPERFAMILY SSF48695 56 307 4.26E-48 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 201 241 1.1E-11 T 14-10-2018 IPR010177 Doubled CXXCH motif RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 155 191 4.4E-5 T 14-10-2018 IPR010177 Doubled CXXCH motif RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 248 283 5.2E-11 T 14-10-2018 IPR010177 Doubled CXXCH motif RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 88 143 3.1E-6 T 14-10-2018 IPR010177 Doubled CXXCH motif RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 TIGRFAM TIGR03508 decahem_SO: decaheme c-type cytochrome, DmsE family 56 317 3.0E-100 T 14-10-2018 IPR020015 Decaheme cytochrome, c-type, DmsE RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 248 283 2.0E-10 T 14-10-2018 IPR010177 Doubled CXXCH motif RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 201 240 4.5E-8 T 14-10-2018 IPR010177 Doubled CXXCH motif RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 Gene3D G3DSA:1.10.1130.10 21 125 1.3E-5 T 14-10-2018 RY45_14525 89184fcf879cb5dd46e62b9d1614cf19 323 Gene3D G3DSA:1.10.1130.10 150 243 1.7E-7 T 14-10-2018 RY45_19670 b791845a53fd15caf79f822a2814c66c 486 Gene3D G3DSA:3.40.50.2000 8 480 2.4E-165 T 14-10-2018 RY45_19670 b791845a53fd15caf79f822a2814c66c 486 Pfam PF08323 Starch synthase catalytic domain 7 244 2.6E-74 T 14-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 RY45_19670 b791845a53fd15caf79f822a2814c66c 486 Pfam PF00534 Glycosyl transferases group 1 299 461 2.7E-16 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 RY45_19670 b791845a53fd15caf79f822a2814c66c 486 Hamap MF_00484 Glycogen synthase [glgA]. 6 482 40.511 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 RY45_19670 b791845a53fd15caf79f822a2814c66c 486 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 7 481 1.5E-160 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 RY45_19670 b791845a53fd15caf79f822a2814c66c 486 SUPERFAMILY SSF53756 5 484 2.8E-117 T 14-10-2018 RY45_19670 b791845a53fd15caf79f822a2814c66c 486 Gene3D G3DSA:3.40.50.2000 258 466 2.4E-165 T 14-10-2018 RY45_05060 151dedee72717335da81402fc3c2e0b1 217 SUPERFAMILY SSF161098 8 201 3.53E-47 T 14-10-2018 IPR035906 MetI-like superfamily RY45_05060 151dedee72717335da81402fc3c2e0b1 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 202 2.9E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_05060 151dedee72717335da81402fc3c2e0b1 217 Gene3D G3DSA:1.10.3720.10 1 216 2.7E-54 T 14-10-2018 IPR035906 MetI-like superfamily RY45_12330 d1931ba291ae855922978a5cb56d28f4 302 SUPERFAMILY SSF46785 3 112 7.45E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_12330 d1931ba291ae855922978a5cb56d28f4 302 Pfam PF03466 LysR substrate binding domain 88 291 1.5E-51 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_12330 d1931ba291ae855922978a5cb56d28f4 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 3.4E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_12330 d1931ba291ae855922978a5cb56d28f4 302 Gene3D G3DSA:3.40.190.290 92 298 2.6E-42 T 14-10-2018 RY45_12330 d1931ba291ae855922978a5cb56d28f4 302 Gene3D G3DSA:1.10.10.10 2 89 1.1E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_12330 d1931ba291ae855922978a5cb56d28f4 302 SUPERFAMILY SSF53850 89 291 7.74E-45 T 14-10-2018 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 297 430 8.1E-37 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 Gene3D G3DSA:1.10.287.950 251 431 9.5E-44 T 14-10-2018 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 SUPERFAMILY SSF58104 243 429 7.06E-50 T 14-10-2018 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 SMART SM00283 226 430 1.7E-18 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 429 1.4E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 323 350 1.4E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 352 381 1.4E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 Pfam PF08447 PAS fold 43 128 4.8E-14 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 146 256 1.1E-17 T 14-10-2018 IPR000014 PAS domain RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 32 136 4.7E-18 T 14-10-2018 IPR000014 PAS domain RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 SUPERFAMILY SSF55785 31 131 2.09E-22 T 14-10-2018 IPR035965 PAS domain superfamily RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 SUPERFAMILY SSF55785 152 254 4.36E-22 T 14-10-2018 IPR035965 PAS domain superfamily RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 Gene3D G3DSA:3.30.450.20 152 250 1.6E-19 T 14-10-2018 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 Gene3D G3DSA:3.30.450.20 7 151 1.8E-24 T 14-10-2018 RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 Pfam PF13426 PAS domain 155 253 1.6E-11 T 14-10-2018 IPR000014 PAS domain RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 SMART SM00091 139 207 6.1 T 14-10-2018 IPR000014 PAS domain RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 SMART SM00091 18 88 1.2 T 14-10-2018 IPR000014 PAS domain RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 SMART SM00086 93 134 9.9E-5 T 14-10-2018 IPR001610 PAC motif RY45_15905 85bcd928f3827c7cb59bfccd3a9a8187 431 SMART SM00086 212 254 3.8E-4 T 14-10-2018 IPR001610 PAC motif RY45_19440 051066d7a24a5459cb82a8b5a09c9042 288 Pfam PF13533 Biotin-lipoyl like 48 95 3.9E-16 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RY45_19440 051066d7a24a5459cb82a8b5a09c9042 288 Gene3D G3DSA:2.40.50.100 46 191 2.4E-37 T 14-10-2018 RY45_19440 051066d7a24a5459cb82a8b5a09c9042 288 SUPERFAMILY SSF111369 46 206 1.57E-24 T 14-10-2018 RY45_19440 051066d7a24a5459cb82a8b5a09c9042 288 Gene3D G3DSA:1.10.287.470 80 156 2.4E-37 T 14-10-2018 RY45_19440 051066d7a24a5459cb82a8b5a09c9042 288 Pfam PF13437 HlyD family secretion protein 157 236 2.7E-7 T 14-10-2018 RY45_19440 051066d7a24a5459cb82a8b5a09c9042 288 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 235 1.0E-37 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RY45_19440 051066d7a24a5459cb82a8b5a09c9042 288 Gene3D G3DSA:2.40.30.170 45 239 2.4E-37 T 14-10-2018 RY45_19790 835dcb51263aed06702793e70d268875 352 Gene3D G3DSA:3.40.50.40 239 352 2.9E-40 T 14-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 SUPERFAMILY SSF53774 25 351 1.44E-108 T 14-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 SMART SM00870 27 346 3.1E-149 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 PIRSF PIRSF500176 24 352 7.2E-84 T 14-10-2018 RY45_19790 835dcb51263aed06702793e70d268875 352 PIRSF PIRSF001220 22 352 3.3E-96 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 Pfam PF00710 Asparaginase, N-terminal 27 220 7.4E-65 T 14-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 108 118 - T 14-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 Gene3D G3DSA:3.40.50.1170 23 238 1.1E-88 T 14-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 30 38 - T 14-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 RY45_19790 835dcb51263aed06702793e70d268875 352 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 12 352 3.3E-159 T 14-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 RY45_19790 835dcb51263aed06702793e70d268875 352 PRINTS PR00139 Asparaginase/glutaminase family signature 107 125 3.5E-22 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 PRINTS PR00139 Asparaginase/glutaminase family signature 28 39 3.5E-22 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_19790 835dcb51263aed06702793e70d268875 352 PRINTS PR00139 Asparaginase/glutaminase family signature 286 304 3.5E-22 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_07075 781f1cbbb57a62f61159bee409eba760 1022 Pfam PF07520 Virulence factor SrfB 1 1019 0.0 T 14-10-2018 IPR009216 Virulence factor SrfB RY45_07075 781f1cbbb57a62f61159bee409eba760 1022 PIRSF PIRSF034585 1 1022 0.0 T 14-10-2018 IPR009216 Virulence factor SrfB RY45_21605 bca91a23165d4518980f20a9eab83634 329 SUPERFAMILY SSF52283 2 135 1.51E-42 T 14-10-2018 RY45_21605 bca91a23165d4518980f20a9eab83634 329 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_21605 bca91a23165d4518980f20a9eab83634 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 1.7E-52 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RY45_21605 bca91a23165d4518980f20a9eab83634 329 SUPERFAMILY SSF51735 102 298 1.28E-54 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21605 bca91a23165d4518980f20a9eab83634 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3 328 6.2E-33 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RY45_21605 bca91a23165d4518980f20a9eab83634 329 Gene3D G3DSA:3.40.50.720 102 297 4.9E-137 T 14-10-2018 RY45_21605 bca91a23165d4518980f20a9eab83634 329 Gene3D G3DSA:3.40.50.720 2 317 4.9E-137 T 14-10-2018 RY45_21605 bca91a23165d4518980f20a9eab83634 329 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_17635 b7815a73b311d3ff58c40ae2c76f7920 155 Gene3D G3DSA:3.40.50.2020 1 154 1.4E-37 T 14-10-2018 RY45_17635 b7815a73b311d3ff58c40ae2c76f7920 155 SUPERFAMILY SSF53271 3 144 5.54E-26 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like RY45_17635 b7815a73b311d3ff58c40ae2c76f7920 155 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 155 39.557 T 14-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 RY45_17635 b7815a73b311d3ff58c40ae2c76f7920 155 Pfam PF00156 Phosphoribosyl transferase domain 15 147 1.5E-11 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RY45_15260 8ab3048f28f4450eaf6ccb47ee97ae06 401 Gene3D G3DSA:1.20.1250.20 8 383 1.1E-42 T 14-10-2018 RY45_15260 8ab3048f28f4450eaf6ccb47ee97ae06 401 ProSitePatterns PS00216 Sugar transport proteins signature 1. 64 80 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RY45_15260 8ab3048f28f4450eaf6ccb47ee97ae06 401 SUPERFAMILY SSF103473 8 384 6.15E-47 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_15260 8ab3048f28f4450eaf6ccb47ee97ae06 401 Pfam PF07690 Major Facilitator Superfamily 13 342 2.6E-29 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_12190 08ef842e356e27169bd480cbfaa3ba03 107 SUPERFAMILY SSF102816 3 102 2.09E-24 T 14-10-2018 IPR036763 Putative dsDNA mimic superfamily RY45_12190 08ef842e356e27169bd480cbfaa3ba03 107 Gene3D G3DSA:3.10.450.140 5 103 6.7E-35 T 14-10-2018 IPR036763 Putative dsDNA mimic superfamily RY45_12190 08ef842e356e27169bd480cbfaa3ba03 107 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 6 103 2.0E-16 T 14-10-2018 IPR007376 dsDNA mimic, putative RY45_12190 08ef842e356e27169bd480cbfaa3ba03 107 Pfam PF04269 Protein of unknown function, DUF440 4 103 4.7E-38 T 14-10-2018 IPR007376 dsDNA mimic, putative RY45_06880 cc1171346261d312048e143a70a12570 288 Gene3D G3DSA:3.40.1090.10 98 191 2.4E-11 T 14-10-2018 RY45_06880 cc1171346261d312048e143a70a12570 288 Gene3D G3DSA:3.40.1090.20 4 97 2.2E-8 T 14-10-2018 RY45_06880 cc1171346261d312048e143a70a12570 288 SUPERFAMILY SSF52151 4 281 1.13E-59 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_06880 cc1171346261d312048e143a70a12570 288 Pfam PF01734 Patatin-like phospholipase 9 167 1.6E-18 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RY45_03030 ef3646a7a7e9c68ea3489a41dddc9cb3 915 Pfam PF01752 Collagenase 638 872 5.8E-72 T 14-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 RY45_03030 ef3646a7a7e9c68ea3489a41dddc9cb3 915 Gene3D G3DSA:1.10.1740.190 636 774 5.0E-37 T 14-10-2018 RY45_03030 ef3646a7a7e9c68ea3489a41dddc9cb3 915 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 781 796 4.5E-21 T 14-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 RY45_03030 ef3646a7a7e9c68ea3489a41dddc9cb3 915 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 715 731 4.5E-21 T 14-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 RY45_03030 ef3646a7a7e9c68ea3489a41dddc9cb3 915 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 758 776 4.5E-21 T 14-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 RY45_03030 ef3646a7a7e9c68ea3489a41dddc9cb3 915 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 387 405 4.5E-21 T 14-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 RY45_03790 17ff85cacdf3f3d630d1ba9bf0730b9a 249 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 233 1.7E-108 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RY45_03790 17ff85cacdf3f3d630d1ba9bf0730b9a 249 SUPERFAMILY SSF75217 1 244 6.28E-102 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_03790 17ff85cacdf3f3d630d1ba9bf0730b9a 249 Gene3D G3DSA:3.40.1280.10 1 160 4.4E-69 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_03790 17ff85cacdf3f3d630d1ba9bf0730b9a 249 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 1.3E-68 T 14-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RY45_03790 17ff85cacdf3f3d630d1ba9bf0730b9a 249 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 249 119.109 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RY45_03790 17ff85cacdf3f3d630d1ba9bf0730b9a 249 PIRSF PIRSF000386 1 247 7.5E-102 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RY45_03790 17ff85cacdf3f3d630d1ba9bf0730b9a 249 Gene3D G3DSA:1.10.1270.20 161 249 9.8E-33 T 14-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RY45_22240 222505c5243588bcaca4dc03102d7e8d 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 112 5.6E-26 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_22240 222505c5243588bcaca4dc03102d7e8d 221 SUPERFAMILY SSF161098 13 203 6.28E-44 T 14-10-2018 IPR035906 MetI-like superfamily RY45_22240 222505c5243588bcaca4dc03102d7e8d 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 218 7.6E-15 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_22240 222505c5243588bcaca4dc03102d7e8d 221 Gene3D G3DSA:1.10.3720.10 1 220 1.3E-51 T 14-10-2018 IPR035906 MetI-like superfamily RY45_19660 5661f171ea43a4feba5acd9d0e111c80 342 Gene3D G3DSA:3.40.50.150 163 342 9.0E-45 T 14-10-2018 RY45_19660 5661f171ea43a4feba5acd9d0e111c80 342 Pfam PF08468 Methyltransferase small domain N-terminal 9 165 2.3E-47 T 14-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 RY45_19660 5661f171ea43a4feba5acd9d0e111c80 342 Pfam PF05175 Methyltransferase small domain 173 338 2.6E-57 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RY45_19660 5661f171ea43a4feba5acd9d0e111c80 342 Gene3D G3DSA:3.40.50.150 2 160 2.1E-43 T 14-10-2018 RY45_19660 5661f171ea43a4feba5acd9d0e111c80 342 SUPERFAMILY SSF53335 161 321 2.35E-28 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_19660 5661f171ea43a4feba5acd9d0e111c80 342 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 5 342 45.142 T 14-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 RY45_19660 5661f171ea43a4feba5acd9d0e111c80 342 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 271 277 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_22060 6f33b1ae9599e360b9f15983c31ccc7f 133 Gene3D G3DSA:3.30.420.270 60 128 2.0E-14 T 14-10-2018 RY45_22060 6f33b1ae9599e360b9f15983c31ccc7f 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 132 5.2E-35 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RY45_20840 c0b3c38154775b057dc870ca274236c9 219 Gene3D G3DSA:1.20.1440.100 15 87 1.2E-68 T 14-10-2018 RY45_20840 c0b3c38154775b057dc870ca274236c9 219 SUPERFAMILY SSF56784 2 205 6.42E-27 T 14-10-2018 IPR036412 HAD-like superfamily RY45_20840 c0b3c38154775b057dc870ca274236c9 219 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 1.2E-36 T 14-10-2018 RY45_20840 c0b3c38154775b057dc870ca274236c9 219 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 200 2.7E-52 T 14-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like RY45_20840 c0b3c38154775b057dc870ca274236c9 219 Gene3D G3DSA:3.40.50.1000 3 212 1.2E-68 T 14-10-2018 IPR023214 HAD superfamily RY45_20840 c0b3c38154775b057dc870ca274236c9 219 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 189 5.6E-25 T 14-10-2018 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 Gene3D G3DSA:1.10.287.950 301 630 9.3E-72 T 14-10-2018 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 SMART SM00304 299 353 3.7E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 440 596 3.0E-40 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 SUPERFAMILY SSF58104 321 630 5.1E-77 T 14-10-2018 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 SMART SM00283 368 629 1.2E-67 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 Gene3D G3DSA:3.30.450.20 52 271 5.3E-54 T 14-10-2018 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 Pfam PF02743 Cache domain 54 261 4.3E-28 T 14-10-2018 IPR033479 Double Cache domain 1 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 Pfam PF00672 HAMP domain 305 349 4.0E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 Gene3D G3DSA:3.30.450.20 64 171 5.3E-54 T 14-10-2018 RY45_21300 082dd87c61b01aa3772ea232b5fa376b 630 SUPERFAMILY SSF103190 63 178 4.71E-12 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RY45_19750 fc9f607f2b5429084fcaa12a0b392d7d 291 SUPERFAMILY SSF103481 46 136 9.29E-7 T 14-10-2018 RY45_19750 fc9f607f2b5429084fcaa12a0b392d7d 291 Pfam PF00892 EamA-like transporter family 148 279 4.0E-14 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_19750 fc9f607f2b5429084fcaa12a0b392d7d 291 SUPERFAMILY SSF103481 185 286 1.31E-11 T 14-10-2018 RY45_20790 70e027cbaf3f4da0259938e1402b2581 228 SUPERFAMILY SSF51182 1 227 9.17E-71 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_20790 70e027cbaf3f4da0259938e1402b2581 228 Gene3D G3DSA:2.60.120.10 8 228 1.7E-83 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_20790 70e027cbaf3f4da0259938e1402b2581 228 Gene3D G3DSA:2.60.120.10 11 135 1.7E-83 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_20790 70e027cbaf3f4da0259938e1402b2581 228 Pfam PF02678 Pirin 8 119 5.3E-33 T 14-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 RY45_20790 70e027cbaf3f4da0259938e1402b2581 228 PIRSF PIRSF006232 1 226 2.3E-51 T 14-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 RY45_03565 1306edcd6e3eb1caa5884d8c3d20cf2a 398 SUPERFAMILY SSF53383 1 397 7.21E-120 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_03565 1306edcd6e3eb1caa5884d8c3d20cf2a 398 Gene3D G3DSA:3.90.1150.10 5 392 1.0E-155 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_03565 1306edcd6e3eb1caa5884d8c3d20cf2a 398 Gene3D G3DSA:3.40.640.10 60 300 1.0E-155 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_03565 1306edcd6e3eb1caa5884d8c3d20cf2a 398 PRINTS PR00799 Aspartate aminotransferase signature 273 298 8.6E-37 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RY45_03565 1306edcd6e3eb1caa5884d8c3d20cf2a 398 PRINTS PR00799 Aspartate aminotransferase signature 341 359 8.6E-37 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RY45_03565 1306edcd6e3eb1caa5884d8c3d20cf2a 398 PRINTS PR00799 Aspartate aminotransferase signature 175 194 8.6E-37 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RY45_03565 1306edcd6e3eb1caa5884d8c3d20cf2a 398 PRINTS PR00799 Aspartate aminotransferase signature 206 218 8.6E-37 T 14-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RY45_03565 1306edcd6e3eb1caa5884d8c3d20cf2a 398 Pfam PF00155 Aminotransferase class I and II 27 391 2.2E-82 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_09210 2b7e37e1d740035db60e2d2927a5c2c2 256 SMART SM00382 31 229 9.7E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_09210 2b7e37e1d740035db60e2d2927a5c2c2 256 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_09210 2b7e37e1d740035db60e2d2927a5c2c2 256 SUPERFAMILY SSF52540 7 251 2.66E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_09210 2b7e37e1d740035db60e2d2927a5c2c2 256 Pfam PF00005 ABC transporter 22 181 8.8E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_09210 2b7e37e1d740035db60e2d2927a5c2c2 256 Gene3D G3DSA:3.40.50.300 3 255 1.4E-75 T 14-10-2018 RY45_09210 2b7e37e1d740035db60e2d2927a5c2c2 256 PIRSF PIRSF039085 3 256 2.5E-115 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RY45_11280 ef3a3e4c87d6759b7b8e74048b47a215 257 Pfam PF02146 Sir2 family 13 186 1.4E-49 T 14-10-2018 IPR003000 Sirtuin family GO:0070403 RY45_11280 ef3a3e4c87d6759b7b8e74048b47a215 257 Gene3D G3DSA:3.40.50.1220 8 227 4.2E-78 T 14-10-2018 RY45_11280 ef3a3e4c87d6759b7b8e74048b47a215 257 Gene3D G3DSA:3.30.1600.10 22 158 4.2E-78 T 14-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily RY45_11280 ef3a3e4c87d6759b7b8e74048b47a215 257 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 6 236 57.348 T 14-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 RY45_11280 ef3a3e4c87d6759b7b8e74048b47a215 257 SUPERFAMILY SSF52467 5 235 6.45E-74 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RY45_20185 f5cd4496560a6ee6c493a484a3afeaab 152 Pfam PF03748 Flagellar basal body-associated protein FliL 53 152 4.6E-11 T 14-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 SUPERFAMILY SSF53850 91 292 5.23E-38 T 14-10-2018 RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 SUPERFAMILY SSF46785 1 86 5.94E-24 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.7E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.0E-22 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 Gene3D G3DSA:3.40.190.290 92 294 1.2E-45 T 14-10-2018 RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 Gene3D G3DSA:1.10.10.10 1 91 1.1E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19545 1ac0a2f57a9db1680f752bdc196356ce 297 Pfam PF03466 LysR substrate binding domain 91 290 2.5E-42 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_00485 4fc5dc5142d4021d9fe5abbcf93d9afb 589 Gene3D G3DSA:3.40.50.300 106 304 2.7E-21 T 14-10-2018 RY45_00485 4fc5dc5142d4021d9fe5abbcf93d9afb 589 Pfam PF03237 Terminase-like family 163 383 1.1E-59 T 14-10-2018 IPR004921 Terminase large subunit, T4likevirus-type RY45_00485 4fc5dc5142d4021d9fe5abbcf93d9afb 589 Pfam PF17289 Terminase RNaseH-like domain 411 571 2.5E-37 T 14-10-2018 IPR035421 Terminase, large subunit gp17-like RY45_00485 4fc5dc5142d4021d9fe5abbcf93d9afb 589 Gene3D G3DSA:3.30.420.240 396 571 2.8E-13 T 14-10-2018 RY45_00485 4fc5dc5142d4021d9fe5abbcf93d9afb 589 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 12 69 2.6E-18 T 14-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 39 155 1.9E-23 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 Gene3D G3DSA:3.30.460.80 13 137 1.8E-11 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 299 464 1.3E-35 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 461 540 6.8E-13 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 219 230 - T 14-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 SUPERFAMILY SSF143243 12 197 1.31E-42 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 Gene3D G3DSA:1.10.645.20 184 540 1.6E-111 T 14-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 SUPERFAMILY SSF56762 196 540 9.94E-108 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 90 154 3.0E-25 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12995 cfbe959d807f958a9050c9cceb443574 572 Pfam PF00374 Nickel-dependent hydrogenase 221 289 1.8E-13 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RY45_14700 d3735e0daaca2dbb0742e473fa2a113e 87 Hamap MF_02200 Chaperone NapD [napD]. 5 81 19.041 T 14-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly RY45_14700 d3735e0daaca2dbb0742e473fa2a113e 87 Gene3D G3DSA:3.30.70.920 5 74 1.1E-20 T 14-10-2018 RY45_14700 d3735e0daaca2dbb0742e473fa2a113e 87 Pfam PF03927 NapD protein 6 80 6.0E-28 T 14-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly RY45_20710 948b799040060b53d0e4651b38cf5c69 648 Pfam PF00593 TonB dependent receptor 251 647 1.4E-54 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_20710 948b799040060b53d0e4651b38cf5c69 648 Gene3D G3DSA:2.40.170.20 160 648 1.0E-134 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_20710 948b799040060b53d0e4651b38cf5c69 648 SUPERFAMILY SSF56935 22 648 6.54E-118 T 14-10-2018 RY45_20710 948b799040060b53d0e4651b38cf5c69 648 Gene3D G3DSA:2.170.130.10 20 152 9.1E-40 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_20710 948b799040060b53d0e4651b38cf5c69 648 Pfam PF07715 TonB-dependent Receptor Plug Domain 37 147 1.9E-28 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_01800 aea991b28acaed1d4392f5f52d4e9d6d 265 Pfam PF12118 SprA-related family 18 218 2.8E-45 T 14-10-2018 IPR021973 SprA-related family RY45_06220 7453a695cd5e1f751225db4f1c24fee7 261 Pfam PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) 1 259 1.7E-112 T 14-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 RY45_06220 7453a695cd5e1f751225db4f1c24fee7 261 PIRSF PIRSF029037 1 261 2.1E-104 T 14-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 RY45_06215 2ea9f6b4c65965c70e0107b478d214c2 182 Gene3D G3DSA:3.40.1580.20 1 180 3.9E-53 T 14-10-2018 IPR038228 Syd superfamily RY45_06215 2ea9f6b4c65965c70e0107b478d214c2 182 Hamap MF_01104 Protein Syd [syd]. 3 181 31.278 T 14-10-2018 IPR009948 Syd GO:0009898 RY45_06215 2ea9f6b4c65965c70e0107b478d214c2 182 Pfam PF07348 Syd protein (SUKH-2) 7 178 1.3E-53 T 14-10-2018 IPR009948 Syd GO:0009898 RY45_00740 eec073aa50d4d84c15689ae9565bfb86 248 Gene3D G3DSA:3.40.1630.10 2 52 4.8E-8 T 14-10-2018 RY45_00740 eec073aa50d4d84c15689ae9565bfb86 248 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 1 244 39.774 T 14-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 RY45_00740 eec073aa50d4d84c15689ae9565bfb86 248 Pfam PF04445 Putative SAM-dependent methyltransferase 20 242 2.3E-105 T 14-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 RY45_00740 eec073aa50d4d84c15689ae9565bfb86 248 SUPERFAMILY SSF53335 4 243 7.26E-77 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_00740 eec073aa50d4d84c15689ae9565bfb86 248 Gene3D G3DSA:3.40.50.150 53 247 2.7E-78 T 14-10-2018 RY45_16745 b805e09d9f59e53ac5eec600f4af41e6 160 Pfam PF04390 Lipopolysaccharide-assembly 44 155 1.5E-7 T 14-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 RY45_16745 b805e09d9f59e53ac5eec600f4af41e6 160 Gene3D G3DSA:3.30.160.150 18 160 4.0E-37 T 14-10-2018 RY45_16745 b805e09d9f59e53ac5eec600f4af41e6 160 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 6 160 23.98 T 14-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 30 50 9.5E-70 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 144 164 9.5E-70 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 165 186 9.5E-70 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 11 30 9.5E-70 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 214 9.5E-70 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 9.5E-70 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 192 204 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 Pfam PF00813 FliP family 14 211 2.6E-68 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 10 211 1.4E-92 T 14-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 RY45_14015 79477ae93af63756c6807ef10c1763e1 217 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 144 159 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RY45_17935 5ba0078eb70fb6feb7cfe0a5403e0290 241 Pfam PF00005 ABC transporter 26 172 2.3E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17935 5ba0078eb70fb6feb7cfe0a5403e0290 241 Gene3D G3DSA:3.40.50.300 4 240 6.7E-69 T 14-10-2018 RY45_17935 5ba0078eb70fb6feb7cfe0a5403e0290 241 SUPERFAMILY SSF52540 6 230 1.45E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17935 5ba0078eb70fb6feb7cfe0a5403e0290 241 SMART SM00382 35 221 4.5E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17935 5ba0078eb70fb6feb7cfe0a5403e0290 241 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_04065 154c02825f8de412e7a9a7c4bee54edc 404 Gene3D G3DSA:2.70.98.80 19 403 2.1E-125 T 14-10-2018 RY45_04065 154c02825f8de412e7a9a7c4bee54edc 404 Pfam PF14486 Domain of unknown function (DUF4432) 64 369 2.3E-109 T 14-10-2018 IPR027839 Protein of unknown function DUF4432 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 209 1.4E-81 T 14-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 Gene3D G3DSA:3.30.300.10 410 529 1.8E-51 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 SUPERFAMILY SSF52317 8 241 6.48E-58 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_12720 c3ccfc76e455d015172dda98042c6077 529 Gene3D G3DSA:3.40.50.880 9 210 2.4E-55 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_12720 c3ccfc76e455d015172dda98042c6077 529 Pfam PF02540 NAD synthase 227 296 4.2E-7 T 14-10-2018 IPR022310 NAD/GMP synthase RY45_12720 c3ccfc76e455d015172dda98042c6077 529 Pfam PF00117 Glutamine amidotransferase class-I 12 203 7.8E-41 T 14-10-2018 IPR017926 Glutamine amidotransferase RY45_12720 c3ccfc76e455d015172dda98042c6077 529 SUPERFAMILY SSF54810 409 529 2.22E-51 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 529 56.572 T 14-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 217 529 1.9E-156 T 14-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00097 Anthranilate synthase component II signature 81 92 4.5E-6 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00097 Anthranilate synthase component II signature 181 194 4.5E-6 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00097 Anthranilate synthase component II signature 54 63 4.5E-6 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 5.7E-6 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 5.7E-6 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 5.7E-6 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 SUPERFAMILY SSF52402 201 424 6.4E-59 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 Pfam PF00958 GMP synthase C terminal domain 437 528 7.1E-44 T 14-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.4E-7 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 181 194 1.4E-7 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.4E-7 T 14-10-2018 RY45_12720 c3ccfc76e455d015172dda98042c6077 529 Gene3D G3DSA:3.40.50.620 213 409 1.2E-74 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_21940 453d04a263e2d9b112cd82f057bd3e5d 355 Gene3D G3DSA:3.40.50.2000 160 348 1.4E-28 T 14-10-2018 RY45_21940 453d04a263e2d9b112cd82f057bd3e5d 355 SUPERFAMILY SSF53756 1 347 3.37E-64 T 14-10-2018 RY45_21940 453d04a263e2d9b112cd82f057bd3e5d 355 Gene3D G3DSA:3.40.50.2000 1 154 3.5E-29 T 14-10-2018 RY45_21940 453d04a263e2d9b112cd82f057bd3e5d 355 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 74 288 3.8E-21 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 Pfam PF00271 Helicase conserved C-terminal domain 477 584 3.2E-16 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 Pfam PF00270 DEAD/DEAH box helicase 290 404 5.6E-17 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 SUPERFAMILY SSF52540 214 450 5.29E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 SUPERFAMILY SSF50249 6 172 2.91E-39 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 SMART SM00490 501 585 2.3E-22 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 SUPERFAMILY SSF52540 289 649 4.31E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 Pfam PF17191 RecG wedge domain 11 169 2.2E-19 T 14-10-2018 IPR033454 RecG, wedge domain RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 SMART SM00487 262 456 1.4E-27 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 25 660 8.0E-226 T 14-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 Gene3D G3DSA:3.40.50.300 454 626 2.6E-52 T 14-10-2018 RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 Gene3D G3DSA:2.40.50.140 44 139 1.5E-11 T 14-10-2018 RY45_01715 5c0652f72428f2f05699e5233bf87f29 689 Gene3D G3DSA:3.40.50.300 205 447 3.4E-81 T 14-10-2018 RY45_11755 b73b65c83ea3d5e2bf749c19f80f98c4 95 SUPERFAMILY SSF50715 3 95 2.79E-31 T 14-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_11755 b73b65c83ea3d5e2bf749c19f80f98c4 95 Gene3D G3DSA:2.40.240.10 2 95 3.2E-33 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RY45_11755 b73b65c83ea3d5e2bf749c19f80f98c4 95 Pfam PF01386 Ribosomal L25p family 6 92 8.3E-25 T 14-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RY45_11755 b73b65c83ea3d5e2bf749c19f80f98c4 95 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 95 1.8E-23 T 14-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RY45_11755 b73b65c83ea3d5e2bf749c19f80f98c4 95 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 3 95 25.797 T 14-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RY45_11755 b73b65c83ea3d5e2bf749c19f80f98c4 95 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 5 95 4.0E-47 T 14-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RY45_00415 f7c374cab269d40fd9ce5eda4c30b3dc 190 Gene3D G3DSA:2.40.50.230 4 84 3.0E-23 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RY45_00415 f7c374cab269d40fd9ce5eda4c30b3dc 190 Pfam PF04717 Type VI secretion system, phage-baseplate injector 7 118 1.1E-31 T 14-10-2018 IPR006531 Gp5 N-terminal RY45_00415 f7c374cab269d40fd9ce5eda4c30b3dc 190 Gene3D G3DSA:2.60.220.40 92 155 3.0E-15 T 14-10-2018 RY45_00415 f7c374cab269d40fd9ce5eda4c30b3dc 190 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 8 188 3.8E-34 T 14-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 RY45_10755 9c4e2b46bced28cd09de86d940ae00be 583 Gene3D G3DSA:1.20.1560.10 1 327 2.1E-77 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_10755 9c4e2b46bced28cd09de86d940ae00be 583 Gene3D G3DSA:3.40.50.300 333 581 1.1E-84 T 14-10-2018 RY45_10755 9c4e2b46bced28cd09de86d940ae00be 583 Pfam PF00664 ABC transporter transmembrane region 21 294 1.2E-40 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RY45_10755 9c4e2b46bced28cd09de86d940ae00be 583 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_10755 9c4e2b46bced28cd09de86d940ae00be 583 SMART SM00382 362 555 3.3E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10755 9c4e2b46bced28cd09de86d940ae00be 583 Pfam PF00005 ABC transporter 353 502 2.2E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_10755 9c4e2b46bced28cd09de86d940ae00be 583 SUPERFAMILY SSF52540 330 572 1.17E-81 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10755 9c4e2b46bced28cd09de86d940ae00be 583 SUPERFAMILY SSF90123 6 321 9.03E-71 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 231 273 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 SMART SM00342 194 277 8.4E-30 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 SUPERFAMILY SSF46689 180 227 2.42E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 Gene3D G3DSA:1.10.10.60 177 227 1.6E-11 T 14-10-2018 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 Gene3D G3DSA:1.10.10.60 228 281 1.9E-18 T 14-10-2018 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 Pfam PF12833 Helix-turn-helix domain 200 278 4.2E-19 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 246 261 1.3E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 261 277 1.3E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_07570 f85687cb9ec51b46de7bae236917ee6d 291 SUPERFAMILY SSF46689 230 278 4.66E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10660 5d912e21034ffdb828526d8b47566b02 526 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 513 3.6E-281 T 14-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 RY45_10660 5d912e21034ffdb828526d8b47566b02 526 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 513 2.2E-285 T 14-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 RY45_10660 5d912e21034ffdb828526d8b47566b02 526 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 526 368.88 T 14-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 RY45_06765 de7d85f189dc32fb30ca49d2d93eb1e2 167 Gene3D G3DSA:3.90.79.10 2 167 3.9E-48 T 14-10-2018 RY45_06765 de7d85f189dc32fb30ca49d2d93eb1e2 167 PIRSF PIRSF017340 2 167 7.4E-54 T 14-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 RY45_06765 de7d85f189dc32fb30ca49d2d93eb1e2 167 SUPERFAMILY SSF55811 9 166 1.08E-32 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_06765 de7d85f189dc32fb30ca49d2d93eb1e2 167 Pfam PF00293 NUDIX domain 36 151 1.2E-14 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_06055 73fa5a3bbfa7dd5b762ec98020922ad9 191 SUPERFAMILY SSF52317 1 187 2.8E-45 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_06055 73fa5a3bbfa7dd5b762ec98020922ad9 191 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 3 181 9.0E-57 T 14-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 RY45_06055 73fa5a3bbfa7dd5b762ec98020922ad9 191 Pfam PF01965 DJ-1/PfpI family 1 168 1.5E-38 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RY45_06055 73fa5a3bbfa7dd5b762ec98020922ad9 191 Gene3D G3DSA:3.40.50.880 1 189 4.8E-51 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_19700 ca6b273eac5569a3213bc2e2e1a2a832 90 Pfam PF10719 Late competence development protein ComFB 8 86 7.3E-19 T 14-10-2018 IPR019657 Late competence development protein ComFB RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 SUPERFAMILY SSF55594 276 364 1.15E-23 T 14-10-2018 IPR035895 HPr-like superfamily RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 275 357 2.1E-20 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 Pfam PF00381 PTS HPr component phosphorylation site 276 357 3.4E-25 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 Gene3D G3DSA:3.40.930.10 1 142 1.3E-40 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 SUPERFAMILY SSF55804 153 250 2.62E-6 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 140 6.4E-30 T 14-10-2018 IPR002178 PTS EIIA type-2 domain RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 315 330 - T 14-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 PRINTS PR00107 Phosphocarrier protein signature 286 302 2.4E-16 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 PRINTS PR00107 Phosphocarrier protein signature 314 329 2.4E-16 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 PRINTS PR00107 Phosphocarrier protein signature 329 346 2.4E-16 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 SUPERFAMILY SSF55804 6 141 6.67E-38 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 Gene3D G3DSA:3.30.1340.10 275 361 3.2E-26 T 14-10-2018 IPR035895 HPr-like superfamily RY45_11125 62fd631f2ce4e8d21802d03c9b62ca5c 366 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 286 293 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RY45_12900 c1cfb5890d5fb9d4a45d5f99e2cd2de6 546 Gene3D G3DSA:3.30.70.270 100 274 2.8E-22 T 14-10-2018 RY45_12900 c1cfb5890d5fb9d4a45d5f99e2cd2de6 546 SUPERFAMILY SSF55073 121 273 2.12E-15 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_12900 c1cfb5890d5fb9d4a45d5f99e2cd2de6 546 SUPERFAMILY SSF141868 292 525 9.81E-51 T 14-10-2018 IPR035919 EAL domain superfamily RY45_12900 c1cfb5890d5fb9d4a45d5f99e2cd2de6 546 Gene3D G3DSA:3.20.20.450 285 530 1.2E-48 T 14-10-2018 IPR035919 EAL domain superfamily RY45_12900 c1cfb5890d5fb9d4a45d5f99e2cd2de6 546 SMART SM00052 284 527 1.1E-24 T 14-10-2018 IPR001633 EAL domain RY45_12900 c1cfb5890d5fb9d4a45d5f99e2cd2de6 546 Pfam PF00563 EAL domain 292 522 2.8E-48 T 14-10-2018 IPR001633 EAL domain RY45_12900 c1cfb5890d5fb9d4a45d5f99e2cd2de6 546 Pfam PF00990 Diguanylate cyclase, GGDEF domain 116 266 2.0E-18 T 14-10-2018 IPR000160 GGDEF domain RY45_12900 c1cfb5890d5fb9d4a45d5f99e2cd2de6 546 SMART SM00267 105 274 6.5E-11 T 14-10-2018 IPR000160 GGDEF domain RY45_03875 1712e7dae77ad88ecac09ab635e882b9 167 TIGRFAM TIGR00077 lspA: signal peptidase II 7 163 2.3E-48 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RY45_03875 1712e7dae77ad88ecac09ab635e882b9 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 138 154 4.4E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RY45_03875 1712e7dae77ad88ecac09ab635e882b9 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 54 62 4.4E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RY45_03875 1712e7dae77ad88ecac09ab635e882b9 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 102 117 4.4E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RY45_03875 1712e7dae77ad88ecac09ab635e882b9 167 ProSitePatterns PS00855 Signal peptidases II signature. 105 117 - T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RY45_03875 1712e7dae77ad88ecac09ab635e882b9 167 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 163 17.439 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RY45_03875 1712e7dae77ad88ecac09ab635e882b9 167 Pfam PF01252 Signal peptidase (SPase) II 16 156 3.4E-39 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RY45_01930 1b37f0abccebe1e57478612f7d1a520d 145 Gene3D G3DSA:3.100.10.10 71 145 1.7E-11 T 14-10-2018 RY45_01930 1b37f0abccebe1e57478612f7d1a520d 145 ProSitePatterns PS00475 Ribosomal protein L15 signature. 110 140 - T 14-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01930 1b37f0abccebe1e57478612f7d1a520d 145 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 1.4E-26 T 14-10-2018 IPR021131 Ribosomal protein L18e/L15P RY45_01930 1b37f0abccebe1e57478612f7d1a520d 145 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 144 8.2E-43 T 14-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01930 1b37f0abccebe1e57478612f7d1a520d 145 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 145 17.54 T 14-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RY45_01930 1b37f0abccebe1e57478612f7d1a520d 145 SUPERFAMILY SSF52080 4 144 1.13E-40 T 14-10-2018 IPR036227 Ribosomal L18e/L15P superfamily RY45_01600 9f2d6d1601ce24ccd3f2e6e9401d0b8b 186 Gene3D G3DSA:3.90.870.10 2 184 4.8E-59 T 14-10-2018 RY45_01600 9f2d6d1601ce24ccd3f2e6e9401d0b8b 186 SUPERFAMILY SSF55821 3 183 1.8E-53 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RY45_01600 9f2d6d1601ce24ccd3f2e6e9401d0b8b 186 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 2 184 40.792 T 14-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 RY45_01600 9f2d6d1601ce24ccd3f2e6e9401d0b8b 186 Pfam PF01300 Telomere recombination 11 184 1.2E-43 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 RY45_17585 436bc6fdc3f9f1218f595faae573c3bc 252 Gene3D G3DSA:3.30.950.10 118 244 5.9E-36 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RY45_17585 436bc6fdc3f9f1218f595faae573c3bc 252 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_17585 436bc6fdc3f9f1218f595faae573c3bc 252 Gene3D G3DSA:3.40.1010.10 1 117 1.3E-38 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RY45_17585 436bc6fdc3f9f1218f595faae573c3bc 252 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 82 115 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_17585 436bc6fdc3f9f1218f595faae573c3bc 252 SUPERFAMILY SSF53790 2 243 1.7E-64 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RY45_17585 436bc6fdc3f9f1218f595faae573c3bc 252 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 211 1.8E-43 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RY45_17585 436bc6fdc3f9f1218f595faae573c3bc 252 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 3 237 9.0E-81 T 14-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RY45_13005 ccf2eb59b7c581f0f542ee454062ca88 271 Gene3D G3DSA:3.40.50.12280 17 188 1.6E-51 T 14-10-2018 RY45_13005 ccf2eb59b7c581f0f542ee454062ca88 271 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 135 151 - T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_13005 ccf2eb59b7c581f0f542ee454062ca88 271 SUPERFAMILY SSF56770 40 172 4.19E-51 T 14-10-2018 RY45_13005 ccf2eb59b7c581f0f542ee454062ca88 271 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 52 160 6.6E-24 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09315 a244368ca859d3c80bf79ed86709553d 273 Gene3D G3DSA:3.40.50.1980 21 140 3.8E-36 T 14-10-2018 RY45_09315 a244368ca859d3c80bf79ed86709553d 273 Pfam PF01497 Periplasmic binding protein 25 239 1.0E-26 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain RY45_09315 a244368ca859d3c80bf79ed86709553d 273 Gene3D G3DSA:3.40.50.1980 141 268 7.7E-30 T 14-10-2018 RY45_09315 a244368ca859d3c80bf79ed86709553d 273 SUPERFAMILY SSF53807 22 265 3.02E-62 T 14-10-2018 RY45_21520 d2caa76b4f12dff95f80544e582f5ebb 99 Gene3D G3DSA:1.10.760.10 21 99 3.7E-25 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_21520 d2caa76b4f12dff95f80544e582f5ebb 99 SUPERFAMILY SSF46626 17 98 1.0E-22 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_21520 d2caa76b4f12dff95f80544e582f5ebb 99 Pfam PF00034 Cytochrome c 30 99 2.7E-8 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_05915 d7ac5393e417b32acd249954dc1d15a4 163 Pfam PF16036 Chalcone isomerase-like 21 159 5.8E-9 T 14-10-2018 IPR016087 Chalcone isomerase GO:0016872 RY45_04770 5e104f8675a6cb6754a2a80bb8ad76b0 397 SUPERFAMILY SSF103473 6 386 4.05E-46 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_04770 5e104f8675a6cb6754a2a80bb8ad76b0 397 Pfam PF07690 Major Facilitator Superfamily 18 310 4.0E-29 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_04770 5e104f8675a6cb6754a2a80bb8ad76b0 397 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 396 39.212 T 14-10-2018 IPR022855 Multidrug resistance protein MdtH RY45_04770 5e104f8675a6cb6754a2a80bb8ad76b0 397 Gene3D G3DSA:1.20.1250.20 2 385 6.4E-46 T 14-10-2018 RY45_02600 2a131501e4f73ee12dc3b34fb9ac724a 121 SUPERFAMILY SSF46785 3 99 5.04E-31 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_02600 2a131501e4f73ee12dc3b34fb9ac724a 121 Pfam PF01638 HxlR-like helix-turn-helix 14 99 4.9E-28 T 14-10-2018 IPR002577 Helix-turn-helix, HxlR type RY45_02600 2a131501e4f73ee12dc3b34fb9ac724a 121 Gene3D G3DSA:1.10.10.10 1 111 2.8E-37 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16855 44bb2216c955488e696f8f350515d242 199 PIRSF PIRSF006102 1 199 5.4E-59 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_16855 44bb2216c955488e696f8f350515d242 199 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 4 197 5.2E-93 T 14-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 RY45_16855 44bb2216c955488e696f8f350515d242 199 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 197 7.3E-55 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_16855 44bb2216c955488e696f8f350515d242 199 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 199 27.595 T 14-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 RY45_20640 98c0d7989872108b89aa9cbff808bcf0 298 Gene3D G3DSA:3.20.20.220 1 297 1.0E-111 T 14-10-2018 RY45_20640 98c0d7989872108b89aa9cbff808bcf0 298 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 2.1E-102 T 14-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 RY45_20640 98c0d7989872108b89aa9cbff808bcf0 298 Pfam PF02219 Methylenetetrahydrofolate reductase 17 291 2.5E-103 T 14-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RY45_20640 98c0d7989872108b89aa9cbff808bcf0 298 SUPERFAMILY SSF51730 22 294 5.1E-95 T 14-10-2018 IPR029041 FAD-linked oxidoreductase-like RY45_02770 31443f6cff799373d2105fc3d72ef862 317 SUPERFAMILY SSF52317 17 297 6.01E-102 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_02770 31443f6cff799373d2105fc3d72ef862 317 PIRSF PIRSF000450 1 309 8.9E-144 T 14-10-2018 IPR033752 MetA family RY45_02770 31443f6cff799373d2105fc3d72ef862 317 Gene3D G3DSA:3.40.50.880 1 301 1.5E-121 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_02770 31443f6cff799373d2105fc3d72ef862 317 Pfam PF04204 Homoserine O-succinyltransferase 2 299 7.6E-134 T 14-10-2018 IPR033752 MetA family RY45_02770 31443f6cff799373d2105fc3d72ef862 317 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 301 2.5E-149 T 14-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 RY45_02770 31443f6cff799373d2105fc3d72ef862 317 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 40.773 T 14-10-2018 IPR033752 MetA family RY45_02770 31443f6cff799373d2105fc3d72ef862 317 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 1.0E-103 T 14-10-2018 RY45_00760 60512e1198d33263949d39d0f432180d 429 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_00760 60512e1198d33263949d39d0f432180d 429 Gene3D G3DSA:3.40.50.300 232 413 9.0E-50 T 14-10-2018 RY45_00760 60512e1198d33263949d39d0f432180d 429 Gene3D G3DSA:3.40.50.300 2 222 2.8E-67 T 14-10-2018 RY45_00760 60512e1198d33263949d39d0f432180d 429 Pfam PF00271 Helicase conserved C-terminal domain 242 351 4.3E-31 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_00760 60512e1198d33263949d39d0f432180d 429 SMART SM00490 270 351 5.4E-34 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_00760 60512e1198d33263949d39d0f432180d 429 Pfam PF00270 DEAD/DEAH box helicase 33 206 2.3E-44 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_00760 60512e1198d33263949d39d0f432180d 429 SUPERFAMILY SSF52540 84 365 3.75E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_00760 60512e1198d33263949d39d0f432180d 429 SMART SM00487 28 234 1.1E-49 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_00760 60512e1198d33263949d39d0f432180d 429 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.321 T 14-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 Gene3D G3DSA:3.40.1190.20 234 497 1.3E-80 T 14-10-2018 IPR029056 Ribokinase-like RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 Gene3D G3DSA:3.40.50.10260 20 233 1.1E-54 T 14-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 240 501 21.062 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 SUPERFAMILY SSF64153 21 261 9.29E-59 T 14-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 Pfam PF03853 YjeF-related protein N-terminus 44 206 2.0E-40 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 SUPERFAMILY SSF53613 239 496 7.2E-69 T 14-10-2018 IPR029056 Ribokinase-like RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 PIRSF PIRSF017184 19 502 1.8E-123 T 14-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 23 227 21.517 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 245 497 1.3E-61 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 22 226 2.6E-43 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RY45_05090 2649ea5c38db08a7d21966aee2d75567 503 Pfam PF01256 Carbohydrate kinase 263 491 6.8E-56 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 Pfam PF02754 Cysteine-rich domain 703 773 0.19 T 14-10-2018 IPR004017 Cysteine-rich domain RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 Gene3D G3DSA:1.10.1060.10 513 626 1.4E-10 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 Pfam PF02913 FAD linked oxidases, C-terminal domain 267 510 2.7E-60 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 536 547 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 Gene3D G3DSA:3.30.43.10 4 89 3.1E-7 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 SUPERFAMILY SSF56176 5 263 1.12E-56 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 SUPERFAMILY SSF46548 499 621 7.67E-20 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 SUPERFAMILY SSF55103 239 517 1.41E-58 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 Gene3D G3DSA:1.10.45.10 472 512 2.4E-8 T 14-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 Pfam PF01565 FAD binding domain 40 175 9.0E-28 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 Pfam PF13183 4Fe-4S dicluster domain 534 604 1.7E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13270 f117e743f8e38bf959c19611f07e0a70 930 Gene3D G3DSA:3.30.70.2740 388 471 3.0E-9 T 14-10-2018 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 Gene3D G3DSA:1.10.760.10 164 277 5.2E-10 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 SUPERFAMILY SSF46626 171 276 6.37E-17 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 PIRSF PIRSF000018 1 399 1.4E-127 T 14-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 293 372 1.2E-9 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 26 124 8.6E-5 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 Gene3D G3DSA:1.10.760.10 280 399 1.2E-27 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 Gene3D G3DSA:1.10.760.10 2 135 8.5E-10 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 SUPERFAMILY SSF46626 24 148 2.99E-18 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_15225 0977955780c24894bd9adfb9f78428d3 399 SUPERFAMILY SSF46626 294 396 5.73E-19 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 Pfam PF01293 Phosphoenolpyruvate carboxykinase 25 491 5.5E-212 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 14 541 1.3E-277 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 266 281 - T 14-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 Gene3D G3DSA:3.90.228.20 236 526 2.2E-237 T 14-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 Gene3D G3DSA:3.40.449.10 26 235 2.2E-237 T 14-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 SUPERFAMILY SSF68923 11 228 7.85E-90 T 14-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 PIRSF PIRSF006294 7 541 9.1E-229 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 19 539 55.144 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 Gene3D G3DSA:2.170.8.10 50 351 2.2E-237 T 14-10-2018 RY45_03265 e6db625402aaa1f722977a3f5f52f3bc 541 SUPERFAMILY SSF53795 230 541 1.47E-129 T 14-10-2018 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 Gene3D G3DSA:3.30.160.40 227 312 2.6E-29 T 14-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 PRINTS PR00151 Porphobilinogen deaminase signature 236 253 2.2E-50 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 PRINTS PR00151 Porphobilinogen deaminase signature 130 147 2.2E-50 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 PRINTS PR00151 Porphobilinogen deaminase signature 51 71 2.2E-50 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 PRINTS PR00151 Porphobilinogen deaminase signature 149 166 2.2E-50 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 PRINTS PR00151 Porphobilinogen deaminase signature 82 101 2.2E-50 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 232 301 8.4E-21 T 14-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 SUPERFAMILY SSF54782 227 313 1.44E-27 T 14-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 SUPERFAMILY SSF53850 10 225 2.46E-87 T 14-10-2018 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 237 253 - T 14-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 12 303 7.3E-116 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 Gene3D G3DSA:3.40.190.10 12 216 4.2E-86 T 14-10-2018 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 Gene3D G3DSA:3.40.190.10 109 208 4.2E-86 T 14-10-2018 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 12 218 2.8E-81 T 14-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 11 303 40.301 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_02665 db5ab0ed7a2fb6241be211682fcdd056 315 PIRSF PIRSF001438 1 315 1.5E-123 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RY45_09750 e520abf6a3a3febe804615df8bda7821 81 SMART SM00360 1 64 8.1E-12 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 RY45_09750 e520abf6a3a3febe804615df8bda7821 81 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 62 3.5E-17 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 RY45_09750 e520abf6a3a3febe804615df8bda7821 81 Gene3D G3DSA:3.30.70.330 1 81 4.2E-23 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RY45_09750 e520abf6a3a3febe804615df8bda7821 81 SUPERFAMILY SSF54928 1 79 7.74E-24 T 14-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 RY45_21820 6be7cdae36d7b4c32a8c5dacdde18e41 613 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_21820 6be7cdae36d7b4c32a8c5dacdde18e41 613 SUPERFAMILY SSF52016 421 608 6.59E-59 T 14-10-2018 RY45_21820 6be7cdae36d7b4c32a8c5dacdde18e41 613 Pfam PF00920 Dehydratase family 34 604 2.3E-217 T 14-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_21820 6be7cdae36d7b4c32a8c5dacdde18e41 613 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 607 2.3E-259 T 14-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_21820 6be7cdae36d7b4c32a8c5dacdde18e41 613 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 607 45.021 T 14-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_21820 6be7cdae36d7b4c32a8c5dacdde18e41 613 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_21820 6be7cdae36d7b4c32a8c5dacdde18e41 613 Gene3D G3DSA:3.50.30.80 421 572 5.4E-55 T 14-10-2018 RY45_21820 6be7cdae36d7b4c32a8c5dacdde18e41 613 SUPERFAMILY SSF143975 3 420 3.66E-135 T 14-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RY45_11890 ee29395affff680b3164c329b2bec6c0 717 Pfam PF08448 PAS fold 420 528 9.8E-22 T 14-10-2018 IPR013656 PAS fold-4 RY45_11890 ee29395affff680b3164c329b2bec6c0 717 SUPERFAMILY SSF55785 401 524 3.84E-21 T 14-10-2018 IPR035965 PAS domain superfamily RY45_11890 ee29395affff680b3164c329b2bec6c0 717 SUPERFAMILY SSF55785 523 649 2.09E-16 T 14-10-2018 IPR035965 PAS domain superfamily RY45_11890 ee29395affff680b3164c329b2bec6c0 717 Pfam PF13188 PAS domain 540 582 2.3E-5 T 14-10-2018 IPR000014 PAS domain RY45_11890 ee29395affff680b3164c329b2bec6c0 717 Gene3D G3DSA:3.30.450.20 538 669 2.3E-16 T 14-10-2018 RY45_11890 ee29395affff680b3164c329b2bec6c0 717 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 534 658 8.5E-18 T 14-10-2018 IPR000014 PAS domain RY45_11890 ee29395affff680b3164c329b2bec6c0 717 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 412 531 5.2E-18 T 14-10-2018 IPR000014 PAS domain RY45_11890 ee29395affff680b3164c329b2bec6c0 717 SMART SM00091 413 479 2.6E-6 T 14-10-2018 IPR000014 PAS domain RY45_11890 ee29395affff680b3164c329b2bec6c0 717 SMART SM00091 538 605 0.001 T 14-10-2018 IPR000014 PAS domain RY45_11890 ee29395affff680b3164c329b2bec6c0 717 Gene3D G3DSA:3.30.450.20 397 537 3.3E-28 T 14-10-2018 RY45_01080 193c908025dc7218c20ba81931b0fb91 278 SUPERFAMILY SSF82861 24 108 3.53E-17 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RY45_01080 193c908025dc7218c20ba81931b0fb91 278 Pfam PF00924 Mechanosensitive ion channel 67 264 7.0E-56 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RY45_01080 193c908025dc7218c20ba81931b0fb91 278 SUPERFAMILY SSF50182 110 175 1.34E-16 T 14-10-2018 IPR010920 LSM domain superfamily RY45_01080 193c908025dc7218c20ba81931b0fb91 278 Pfam PF05552 Conserved TM helix 11 60 1.1E-12 T 14-10-2018 IPR008910 Conserved TM helix RY45_01080 193c908025dc7218c20ba81931b0fb91 278 Gene3D G3DSA:2.30.30.60 125 174 5.9E-18 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RY45_01080 193c908025dc7218c20ba81931b0fb91 278 Gene3D G3DSA:3.30.70.100 175 269 9.1E-28 T 14-10-2018 RY45_01080 193c908025dc7218c20ba81931b0fb91 278 SUPERFAMILY SSF82689 176 275 1.03E-33 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RY45_07310 600f5adc8ef6d9d5ac067a1c47195af2 308 SUPERFAMILY SSF103088 127 254 2.49E-28 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_07310 600f5adc8ef6d9d5ac067a1c47195af2 308 Pfam PF00691 OmpA family 152 249 3.5E-19 T 14-10-2018 IPR006665 OmpA-like domain RY45_07310 600f5adc8ef6d9d5ac067a1c47195af2 308 Gene3D G3DSA:3.30.1330.60 107 260 4.4E-39 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_07310 600f5adc8ef6d9d5ac067a1c47195af2 308 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 8 58 1.1E-16 T 14-10-2018 IPR025713 Motility protein B, N-terminal domain RY45_03735 9ab004660bfad1a1645d4e84ced32a35 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 6 110 2.6E-13 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_03735 9ab004660bfad1a1645d4e84ced32a35 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 23 214 2.7E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_03735 9ab004660bfad1a1645d4e84ced32a35 220 SUPERFAMILY SSF161098 8 201 9.03E-27 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03735 9ab004660bfad1a1645d4e84ced32a35 220 Gene3D G3DSA:1.10.3720.10 1 216 7.5E-38 T 14-10-2018 IPR035906 MetI-like superfamily RY45_16255 39f7e09e7cd5d5a5598d67be0211e584 194 SUPERFAMILY SSF89392 18 192 3.1E-46 T 14-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RY45_16255 39f7e09e7cd5d5a5598d67be0211e584 194 Gene3D G3DSA:2.50.20.10 22 193 5.5E-54 T 14-10-2018 RY45_16255 39f7e09e7cd5d5a5598d67be0211e584 194 Pfam PF03550 Outer membrane lipoprotein LolB 43 190 1.1E-47 T 14-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 RY45_16255 39f7e09e7cd5d5a5598d67be0211e584 194 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 2 192 24.75 T 14-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 RY45_16255 39f7e09e7cd5d5a5598d67be0211e584 194 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 5 191 1.9E-44 T 14-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 RY45_10395 58d0f697f4039b5cc4abe2fb827a9934 479 Pfam PF00202 Aminotransferase class-III 73 465 5.9E-80 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_10395 58d0f697f4039b5cc4abe2fb827a9934 479 Gene3D G3DSA:3.40.640.10 105 364 1.4E-118 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_10395 58d0f697f4039b5cc4abe2fb827a9934 479 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 281 318 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_10395 58d0f697f4039b5cc4abe2fb827a9934 479 Gene3D G3DSA:3.90.1150.10 77 460 1.4E-118 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_10395 58d0f697f4039b5cc4abe2fb827a9934 479 SUPERFAMILY SSF53383 72 468 3.42E-106 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_10395 58d0f697f4039b5cc4abe2fb827a9934 479 PIRSF PIRSF000521 169 468 3.4E-20 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_10395 58d0f697f4039b5cc4abe2fb827a9934 479 PIRSF PIRSF000521 58 176 3.4E-5 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_20270 d0c7a7a2d252eede0d388ea951bfbc0b 231 Pfam PF13861 FlgD Tudor-like domain 97 222 2.0E-10 T 14-10-2018 IPR025963 FlgD Tudor-like domain RY45_20270 d0c7a7a2d252eede0d388ea951bfbc0b 231 Gene3D G3DSA:2.30.30.910 105 221 3.5E-23 T 14-10-2018 RY45_20270 d0c7a7a2d252eede0d388ea951bfbc0b 231 Gene3D G3DSA:2.60.40.4070 114 193 3.5E-23 T 14-10-2018 RY45_20270 d0c7a7a2d252eede0d388ea951bfbc0b 231 Pfam PF13860 FlgD Ig-like domain 121 182 1.1E-10 T 14-10-2018 IPR025965 FlgD Ig-like domain RY45_20270 d0c7a7a2d252eede0d388ea951bfbc0b 231 Pfam PF03963 Flagellar hook capping protein - N-terminal region 17 84 2.9E-18 T 14-10-2018 IPR005648 Flagellar hook capping protein RY45_18745 4043aa0e60e83c8c1efc7ff35267d61e 139 Pfam PF14467 Domain of unknown function (DUF4426) 24 139 8.3E-45 T 14-10-2018 IPR025218 Domain of unknown function DUF4426 RY45_18745 4043aa0e60e83c8c1efc7ff35267d61e 139 Gene3D G3DSA:2.60.40.3340 15 139 5.4E-41 T 14-10-2018 RY45_11015 11b8bc29e340a897e5df928181e088b5 169 Pfam PF00583 Acetyltransferase (GNAT) family 31 139 8.4E-15 T 14-10-2018 IPR000182 GNAT domain RY45_11015 11b8bc29e340a897e5df928181e088b5 169 SUPERFAMILY SSF55729 1 167 1.32E-31 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_11015 11b8bc29e340a897e5df928181e088b5 169 Gene3D G3DSA:3.40.630.30 1 166 1.7E-38 T 14-10-2018 RY45_17885 2dd416b5352b4e115172274deb272318 391 PRINTS PR00723 Subtilisin serine protease family (S8) signature 149 162 5.5E-19 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related RY45_17885 2dd416b5352b4e115172274deb272318 391 PRINTS PR00723 Subtilisin serine protease family (S8) signature 311 327 5.5E-19 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related RY45_17885 2dd416b5352b4e115172274deb272318 391 PRINTS PR00723 Subtilisin serine protease family (S8) signature 110 129 5.5E-19 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related RY45_17885 2dd416b5352b4e115172274deb272318 391 Pfam PF00082 Subtilase family 112 362 4.2E-40 T 14-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RY45_17885 2dd416b5352b4e115172274deb272318 391 Gene3D G3DSA:3.30.70.80 17 91 1.9E-8 T 14-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 RY45_17885 2dd416b5352b4e115172274deb272318 391 Gene3D G3DSA:3.40.50.200 92 376 6.3E-81 T 14-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RY45_17885 2dd416b5352b4e115172274deb272318 391 SUPERFAMILY SSF54897 24 87 6.23E-5 T 14-10-2018 RY45_17885 2dd416b5352b4e115172274deb272318 391 SUPERFAMILY SSF52743 90 371 1.96E-78 T 14-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RY45_17885 2dd416b5352b4e115172274deb272318 391 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 312 322 - T 14-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RY45_17885 2dd416b5352b4e115172274deb272318 391 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 153 163 - T 14-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RY45_11455 73bf82740bc67b651b10c11b9aa501f8 545 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 523 543 1.0E-4 T 14-10-2018 IPR020008 GlyGly-CTERM domain RY45_11455 73bf82740bc67b651b10c11b9aa501f8 545 Pfam PF11949 Protein of unknown function (DUF3466) 210 542 1.3E-40 T 14-10-2018 IPR022562 Protein of unknown function DUF3466 RY45_04450 a36cec9925d52d8793f31c14b2717f9a 301 SUPERFAMILY SSF101790 219 299 1.37E-22 T 14-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RY45_04450 a36cec9925d52d8793f31c14b2717f9a 301 Gene3D G3DSA:2.40.30.160 172 292 2.0E-38 T 14-10-2018 RY45_04450 a36cec9925d52d8793f31c14b2717f9a 301 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 164 227 9.2E-25 T 14-10-2018 IPR017703 YgfZ/GcvT conserved site RY45_04450 a36cec9925d52d8793f31c14b2717f9a 301 SUPERFAMILY SSF103025 10 217 1.88E-50 T 14-10-2018 RY45_04450 a36cec9925d52d8793f31c14b2717f9a 301 PIRSF PIRSF006487 174 235 39.0 T 14-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RY45_04450 a36cec9925d52d8793f31c14b2717f9a 301 PIRSF PIRSF006487 8 129 1.2E-8 T 14-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RY45_04450 a36cec9925d52d8793f31c14b2717f9a 301 Pfam PF01571 Aminomethyltransferase folate-binding domain 12 117 3.2E-7 T 14-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RY45_04450 a36cec9925d52d8793f31c14b2717f9a 301 Gene3D G3DSA:3.30.70.1400 19 103 1.4E-20 T 14-10-2018 RY45_00980 aea5389f3160aefacddb6d8983d719a0 240 Gene3D G3DSA:3.40.50.2300 1 123 3.7E-42 T 14-10-2018 RY45_00980 aea5389f3160aefacddb6d8983d719a0 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 232 2.4E-17 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_00980 aea5389f3160aefacddb6d8983d719a0 240 SUPERFAMILY SSF46894 137 234 1.02E-21 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_00980 aea5389f3160aefacddb6d8983d719a0 240 SMART SM00862 156 232 2.4E-15 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_00980 aea5389f3160aefacddb6d8983d719a0 240 SMART SM00448 5 115 3.6E-48 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00980 aea5389f3160aefacddb6d8983d719a0 240 Gene3D G3DSA:1.10.10.10 124 238 1.9E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00980 aea5389f3160aefacddb6d8983d719a0 240 Pfam PF00072 Response regulator receiver domain 8 116 1.2E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00980 aea5389f3160aefacddb6d8983d719a0 240 SUPERFAMILY SSF52172 3 129 2.13E-45 T 14-10-2018 IPR011006 CheY-like superfamily RY45_18500 793200dee48094fe1d37c49d99060e53 273 Gene3D G3DSA:3.40.50.1000 6 266 2.9E-59 T 14-10-2018 IPR023214 HAD superfamily RY45_18500 793200dee48094fe1d37c49d99060e53 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 7 78 7.6E-13 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RY45_18500 793200dee48094fe1d37c49d99060e53 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 266 1.8E-54 T 14-10-2018 RY45_18500 793200dee48094fe1d37c49d99060e53 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 6 17 - T 14-10-2018 RY45_18500 793200dee48094fe1d37c49d99060e53 273 Gene3D G3DSA:3.30.1240.10 85 195 2.9E-59 T 14-10-2018 RY45_18500 793200dee48094fe1d37c49d99060e53 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 7 266 2.7E-55 T 14-10-2018 IPR000150 Cof family GO:0016787 RY45_18500 793200dee48094fe1d37c49d99060e53 273 SUPERFAMILY SSF56784 3 271 1.23E-62 T 14-10-2018 IPR036412 HAD-like superfamily RY45_19355 629b4e4b0f9a4bd2282b8bdc42e88526 220 Pfam PF04012 PspA/IM30 family 2 218 3.9E-36 T 14-10-2018 IPR007157 PspA/IM30 RY45_19355 629b4e4b0f9a4bd2282b8bdc42e88526 220 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 217 3.6E-83 T 14-10-2018 IPR014319 Phage shock protein, PspA RY45_13500 36e57150c734c414cf2add771dbdcb32 294 SUPERFAMILY SSF55620 152 293 1.28E-24 T 14-10-2018 RY45_13500 36e57150c734c414cf2add771dbdcb32 294 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 24 134 5.0E-9 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 RY45_13500 36e57150c734c414cf2add771dbdcb32 294 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 150 291 1.3E-7 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 RY45_13500 36e57150c734c414cf2add771dbdcb32 294 Gene3D G3DSA:3.30.479.10 10 153 1.2E-23 T 14-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 RY45_13500 36e57150c734c414cf2add771dbdcb32 294 SUPERFAMILY SSF55620 1 154 9.45E-31 T 14-10-2018 RY45_19740 cc0d23c2871ea4eff66a7d85f2045b27 476 SUPERFAMILY SSF53720 3 474 2.23E-160 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_19740 cc0d23c2871ea4eff66a7d85f2045b27 476 Gene3D G3DSA:3.40.309.10 251 441 1.3E-178 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_19740 cc0d23c2871ea4eff66a7d85f2045b27 476 Pfam PF00171 Aldehyde dehydrogenase family 15 471 5.3E-164 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_19740 cc0d23c2871ea4eff66a7d85f2045b27 476 Gene3D G3DSA:3.40.605.10 23 466 1.3E-178 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_19740 cc0d23c2871ea4eff66a7d85f2045b27 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RY45_17300 7a4dab841610af57e9a48419e55860fa 187 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 128 162 1.5E-9 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_17300 7a4dab841610af57e9a48419e55860fa 187 Pfam PF12464 Maltose acetyltransferase 6 53 4.3E-10 T 14-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RY45_17300 7a4dab841610af57e9a48419e55860fa 187 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 136 164 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_17300 7a4dab841610af57e9a48419e55860fa 187 SMART SM01266 4 56 2.1E-13 T 14-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RY45_17300 7a4dab841610af57e9a48419e55860fa 187 SUPERFAMILY SSF51161 2 178 7.9E-48 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_17300 7a4dab841610af57e9a48419e55860fa 187 Gene3D G3DSA:2.160.10.10 1 181 2.4E-62 T 14-10-2018 RY45_15180 6a4b9deb5329bd0c2682b746f6834cc6 118 Pfam PF05656 Protein of unknown function (DUF805) 11 115 1.6E-32 T 14-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 SUPERFAMILY SSF56059 124 313 1.7E-58 T 14-10-2018 RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 177.31 T 14-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 8.4E-79 T 14-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 SUPERFAMILY SSF52440 3 123 3.45E-45 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 TIGRFAM TIGR01380 glut_syn: glutathione synthase 3 312 7.9E-137 T 14-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 Gene3D G3DSA:3.40.50.20 8 115 1.6E-117 T 14-10-2018 RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 Gene3D G3DSA:3.30.470.20 116 296 1.6E-117 T 14-10-2018 RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 3 121 4.5E-46 T 14-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RY45_16130 560186e09d55fc1bf50cd8cd21f0bd8f 317 Gene3D G3DSA:3.30.1490.20 138 202 1.6E-117 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 Pfam PF01578 Cytochrome C assembly protein 89 296 1.1E-53 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 5.5E-256 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 638 8.2E-126 T 14-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 2.1E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 2.1E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 2.1E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 2.1E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.1E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.1E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 2.1E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 2.1E-93 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 7.8E-54 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 7.8E-54 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 7.8E-54 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 7.8E-54 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 7.8E-54 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 7.8E-54 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07360 e6159090a0b4ce06e2b9bf747979a344 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 7.8E-54 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_00175 1e3852844f3c17fad99fe7c4fdc8b6f0 346 Pfam PF12146 Serine aminopeptidase, S33 71 329 1.9E-59 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 RY45_00175 1e3852844f3c17fad99fe7c4fdc8b6f0 346 Gene3D G3DSA:3.40.50.1820 46 346 2.6E-47 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_00175 1e3852844f3c17fad99fe7c4fdc8b6f0 346 SUPERFAMILY SSF53474 54 345 2.84E-36 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_04160 9ffe459ad94cc1e78b7b5a0eacf463ff 153 SUPERFAMILY SSF69635 4 142 3.98E-10 T 14-10-2018 RY45_04160 9ffe459ad94cc1e78b7b5a0eacf463ff 153 Pfam PF05932 Tir chaperone protein (CesT) family 7 127 1.2E-8 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 RY45_04160 9ffe459ad94cc1e78b7b5a0eacf463ff 153 Gene3D G3DSA:3.30.1460.10 3 133 9.9E-8 T 14-10-2018 RY45_06540 74fdb266ad8791049d7f595a2903ae3b 181 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 181 3.3E-61 T 14-10-2018 IPR010275 Protein of unknown function DUF882 RY45_06540 74fdb266ad8791049d7f595a2903ae3b 181 Gene3D G3DSA:3.30.1380.10 65 181 6.1E-10 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RY45_06540 74fdb266ad8791049d7f595a2903ae3b 181 SUPERFAMILY SSF55166 66 181 4.97E-32 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RY45_15215 26b91018d8442459b0bbb097914790b8 347 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 5 230 6.9E-117 T 14-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 RY45_15215 26b91018d8442459b0bbb097914790b8 347 Pfam PF06481 COX Aromatic Rich Motif 230 276 8.4E-20 T 14-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 RY45_15215 26b91018d8442459b0bbb097914790b8 347 PIRSF PIRSF000292 1 305 5.2E-133 T 14-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 RY45_15215 26b91018d8442459b0bbb097914790b8 347 Gene3D G3DSA:2.60.40.420 104 273 1.5E-59 T 14-10-2018 IPR008972 Cupredoxin RY45_15215 26b91018d8442459b0bbb097914790b8 347 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 142 209 6.2E-5 T 14-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15215 26b91018d8442459b0bbb097914790b8 347 Gene3D G3DSA:1.10.287.90 18 103 5.1E-32 T 14-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15215 26b91018d8442459b0bbb097914790b8 347 SUPERFAMILY SSF81464 18 108 2.94E-22 T 14-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15215 26b91018d8442459b0bbb097914790b8 347 SUPERFAMILY SSF49503 110 273 6.09E-50 T 14-10-2018 IPR008972 Cupredoxin RY45_21240 dc6d3910a6612c02895ed426d2d7221c 245 SUPERFAMILY SSF64438 2 243 7.88E-87 T 14-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic RY45_21240 dc6d3910a6612c02895ed426d2d7221c 245 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 32 243 7.5E-61 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase RY45_21240 dc6d3910a6612c02895ed426d2d7221c 245 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 19 242 5.8E-79 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase RY45_21240 dc6d3910a6612c02895ed426d2d7221c 245 Gene3D G3DSA:3.60.140.10 1 245 5.3E-95 T 14-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily RY45_11650 e2b9be0eaffaf1669b9576a95244f7d6 193 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 185 1.4E-55 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 RY45_11650 e2b9be0eaffaf1669b9576a95244f7d6 193 Pfam PF02545 Maf-like protein 5 186 1.2E-44 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 RY45_11650 e2b9be0eaffaf1669b9576a95244f7d6 193 PIRSF PIRSF006305 1 191 2.0E-45 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 RY45_11650 e2b9be0eaffaf1669b9576a95244f7d6 193 SUPERFAMILY SSF52972 2 185 8.5E-58 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_11650 e2b9be0eaffaf1669b9576a95244f7d6 193 Gene3D G3DSA:3.90.950.10 4 192 2.3E-60 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RY45_11650 e2b9be0eaffaf1669b9576a95244f7d6 193 Hamap MF_00528 Septum formation protein Maf [maf]. 4 192 29.376 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 RY45_05375 4e8a71a0542a3c3db9f536ab77c46d0e 69 Gene3D G3DSA:1.10.260.40 3 68 1.3E-10 T 14-10-2018 RY45_05375 4e8a71a0542a3c3db9f536ab77c46d0e 69 SUPERFAMILY SSF47413 1 66 2.2E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_05375 4e8a71a0542a3c3db9f536ab77c46d0e 69 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 68 1.3E-20 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_05375 4e8a71a0542a3c3db9f536ab77c46d0e 69 SMART SM00530 6 62 7.4E-7 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_12365 e384d515b988c37db6b189d21057b9f9 640 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 198 359 7.5E-31 T 14-10-2018 IPR000160 GGDEF domain RY45_12365 e384d515b988c37db6b189d21057b9f9 640 Pfam PF00563 EAL domain 379 613 1.5E-61 T 14-10-2018 IPR001633 EAL domain RY45_12365 e384d515b988c37db6b189d21057b9f9 640 SUPERFAMILY SSF55073 204 361 1.96E-34 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_12365 e384d515b988c37db6b189d21057b9f9 640 Gene3D G3DSA:3.30.70.270 193 371 9.0E-39 T 14-10-2018 RY45_12365 e384d515b988c37db6b189d21057b9f9 640 SMART SM00052 373 618 2.7E-77 T 14-10-2018 IPR001633 EAL domain RY45_12365 e384d515b988c37db6b189d21057b9f9 640 Pfam PF00990 Diguanylate cyclase, GGDEF domain 200 355 2.6E-30 T 14-10-2018 IPR000160 GGDEF domain RY45_12365 e384d515b988c37db6b189d21057b9f9 640 Gene3D G3DSA:3.20.20.450 372 625 1.9E-74 T 14-10-2018 IPR035919 EAL domain superfamily RY45_12365 e384d515b988c37db6b189d21057b9f9 640 SUPERFAMILY SSF141868 383 627 4.05E-72 T 14-10-2018 IPR035919 EAL domain superfamily RY45_12365 e384d515b988c37db6b189d21057b9f9 640 SMART SM00267 188 360 9.9E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_03770 7fd34bef415b603dbd0c16e34f84577b 263 Pfam PF01578 Cytochrome C assembly protein 40 261 1.3E-36 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RY45_03610 90713e53239009a2886bc0a2261ca1d5 501 SUPERFAMILY SSF56300 102 403 8.22E-9 T 14-10-2018 RY45_03610 90713e53239009a2886bc0a2261ca1d5 501 Gene3D G3DSA:3.60.21.70 96 424 2.8E-5 T 14-10-2018 IPR038607 PhoD-like superfamily RY45_19785 c3023e268b19535ab565f352dad643b5 64 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RY45_19785 c3023e268b19535ab565f352dad643b5 64 Pfam PF00403 Heavy-metal-associated domain 5 61 4.0E-15 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RY45_19785 c3023e268b19535ab565f352dad643b5 64 Gene3D G3DSA:3.30.70.100 2 63 7.8E-17 T 14-10-2018 RY45_19785 c3023e268b19535ab565f352dad643b5 64 SUPERFAMILY SSF55008 1 61 9.42E-16 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RY45_13060 e01673a58bff37e7bf0bd5592eae9688 213 Pfam PF00005 ABC transporter 18 153 2.2E-16 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_13060 e01673a58bff37e7bf0bd5592eae9688 213 Gene3D G3DSA:3.40.50.300 1 211 3.2E-42 T 14-10-2018 RY45_13060 e01673a58bff37e7bf0bd5592eae9688 213 SMART SM00382 26 207 4.1E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_13060 e01673a58bff37e7bf0bd5592eae9688 213 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_13060 e01673a58bff37e7bf0bd5592eae9688 213 SUPERFAMILY SSF52540 2 198 1.42E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15925 13c805f8bed3ce5a9f4b0fc6e8226f64 282 Pfam PF05114 Protein of unknown function (DUF692) 5 267 3.7E-98 T 14-10-2018 IPR007801 Uncharacterised protein family UPF0276 RY45_15925 13c805f8bed3ce5a9f4b0fc6e8226f64 282 SUPERFAMILY SSF51658 24 214 6.96E-6 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily RY45_15925 13c805f8bed3ce5a9f4b0fc6e8226f64 282 Gene3D G3DSA:3.20.20.150 4 278 6.5E-84 T 14-10-2018 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 Gene3D G3DSA:3.30.379.10 116 242 2.0E-14 T 14-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 SUPERFAMILY SSF55545 134 245 1.94E-15 T 14-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 SUPERFAMILY SSF51445 246 603 3.33E-124 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_15995 a130d0f58493feae0a686e33837a45d9 622 Gene3D G3DSA:3.20.20.80 244 619 3.2E-133 T 14-10-2018 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 PRINTS PR00738 Glycosyl hydrolase family 20 signature 269 290 4.8E-45 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 PRINTS PR00738 Glycosyl hydrolase family 20 signature 240 257 4.8E-45 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 PRINTS PR00738 Glycosyl hydrolase family 20 signature 207 227 4.8E-45 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 PRINTS PR00738 Glycosyl hydrolase family 20 signature 410 423 4.8E-45 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 PRINTS PR00738 Glycosyl hydrolase family 20 signature 572 589 4.8E-45 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 PRINTS PR00738 Glycosyl hydrolase family 20 signature 388 406 4.8E-45 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 PRINTS PR00738 Glycosyl hydrolase family 20 signature 339 356 4.8E-45 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 PRINTS PR00738 Glycosyl hydrolase family 20 signature 554 570 4.8E-45 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_15995 a130d0f58493feae0a686e33837a45d9 622 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 134 243 1.7E-12 T 14-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal RY45_15995 a130d0f58493feae0a686e33837a45d9 622 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 246 590 5.3E-110 T 14-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RY45_15690 e5bcdd7ce3652ef87837a591f220db1a 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RY45_15690 e5bcdd7ce3652ef87837a591f220db1a 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 1.7E-50 T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RY45_15690 e5bcdd7ce3652ef87837a591f220db1a 169 SUPERFAMILY SSF51261 18 167 2.27E-55 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_15690 e5bcdd7ce3652ef87837a591f220db1a 169 Gene3D G3DSA:2.70.70.10 9 169 7.0E-63 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_15690 e5bcdd7ce3652ef87837a591f220db1a 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 9.4E-50 T 14-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 Gene3D G3DSA:3.40.50.2300 63 306 1.2E-71 T 14-10-2018 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 Gene3D G3DSA:1.10.260.40 1 59 6.8E-23 T 14-10-2018 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.7E-20 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 SUPERFAMILY SSF53822 61 331 3.73E-81 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.6E-6 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.6E-6 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 Pfam PF13377 Periplasmic binding protein-like domain 168 329 7.8E-39 T 14-10-2018 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 SMART SM00354 1 71 1.7E-30 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 Gene3D G3DSA:3.40.50.2300 160 289 1.2E-71 T 14-10-2018 RY45_21390 af7ede715811fb09832c62ddb932f2b5 334 SUPERFAMILY SSF47413 2 58 3.7E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 Gene3D G3DSA:3.40.1690.10 217 357 1.1E-48 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 1.3E-111 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 351 6.5E-112 T 14-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 6.9E-33 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 6.9E-33 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 6.9E-33 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 6.9E-33 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 6.9E-33 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_20340 17ef9ff2c902f29c9f6d32294f31457e 378 SUPERFAMILY SSF160544 252 354 9.94E-32 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_05685 9842196c973eac7bd4c1593e2a07c586 362 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 105 182 2.0E-29 T 14-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_05685 9842196c973eac7bd4c1593e2a07c586 362 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 3 322 5.5E-113 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_05685 9842196c973eac7bd4c1593e2a07c586 362 SUPERFAMILY SSF53901 3 323 6.43E-66 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_05685 9842196c973eac7bd4c1593e2a07c586 362 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 233 322 1.5E-36 T 14-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_05685 9842196c973eac7bd4c1593e2a07c586 362 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 322 65.264 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_05685 9842196c973eac7bd4c1593e2a07c586 362 Gene3D G3DSA:3.40.47.10 1 360 2.6E-144 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_01170 5a5d66b95033ec678ba55801abd88659 326 SUPERFAMILY SSF50129 2 146 6.85E-47 T 14-10-2018 IPR011032 GroES-like superfamily RY45_01170 5a5d66b95033ec678ba55801abd88659 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 87 5.3E-5 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RY45_01170 5a5d66b95033ec678ba55801abd88659 326 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 3 326 6.6E-137 T 14-10-2018 IPR014188 Acrylyl-CoA reductase AcuI RY45_01170 5a5d66b95033ec678ba55801abd88659 326 SUPERFAMILY SSF51735 116 291 1.31E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01170 5a5d66b95033ec678ba55801abd88659 326 Gene3D G3DSA:3.40.50.720 126 294 2.6E-125 T 14-10-2018 RY45_01170 5a5d66b95033ec678ba55801abd88659 326 Pfam PF00107 Zinc-binding dehydrogenase 159 270 7.6E-12 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RY45_01170 5a5d66b95033ec678ba55801abd88659 326 Gene3D G3DSA:3.90.180.10 18 325 2.6E-125 T 14-10-2018 RY45_01170 5a5d66b95033ec678ba55801abd88659 326 SMART SM00829 13 324 2.3E-6 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RY45_17020 cf24f30b4d2cbb307bb6ca1c9a3ee0b7 89 Pfam PF00312 Ribosomal protein S15 8 88 4.8E-37 T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_17020 cf24f30b4d2cbb307bb6ca1c9a3ee0b7 89 SUPERFAMILY SSF47060 3 89 1.29E-34 T 14-10-2018 IPR009068 S15/NS1, RNA-binding RY45_17020 cf24f30b4d2cbb307bb6ca1c9a3ee0b7 89 SMART SM01387 8 88 1.3E-51 T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_17020 cf24f30b4d2cbb307bb6ca1c9a3ee0b7 89 Gene3D G3DSA:1.10.287.10 2 89 3.1E-35 T 14-10-2018 RY45_17020 cf24f30b4d2cbb307bb6ca1c9a3ee0b7 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 2.2E-37 T 14-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_17020 cf24f30b4d2cbb307bb6ca1c9a3ee0b7 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.414 T 14-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_17020 cf24f30b4d2cbb307bb6ca1c9a3ee0b7 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 7.0E-32 T 14-10-2018 RY45_16570 8b7062469dd338fb93911451fea76962 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 2.5E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_16570 8b7062469dd338fb93911451fea76962 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 2.5E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_16570 8b7062469dd338fb93911451fea76962 213 SUPERFAMILY SSF48498 98 211 7.91E-7 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_16570 8b7062469dd338fb93911451fea76962 213 SUPERFAMILY SSF46689 19 85 1.85E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_16570 8b7062469dd338fb93911451fea76962 213 Gene3D G3DSA:1.10.357.10 6 212 2.1E-51 T 14-10-2018 RY45_16570 8b7062469dd338fb93911451fea76962 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 71 4.7E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_04560 b47daa24e8bd5a2638130a819dba37e7 437 SUPERFAMILY SSF51569 5 424 4.21E-170 T 14-10-2018 RY45_04560 b47daa24e8bd5a2638130a819dba37e7 437 PIRSF PIRSF009264 1 428 2.6E-199 T 14-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 RY45_04560 b47daa24e8bd5a2638130a819dba37e7 437 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 423 7.4E-205 T 14-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 RY45_04560 b47daa24e8bd5a2638130a819dba37e7 437 Gene3D G3DSA:1.10.400.20 287 410 4.2E-171 T 14-10-2018 RY45_04560 b47daa24e8bd5a2638130a819dba37e7 437 Pfam PF08013 Tagatose 6 phosphate kinase 5 423 2.0E-199 T 14-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 RY45_04560 b47daa24e8bd5a2638130a819dba37e7 437 Gene3D G3DSA:3.20.20.70 8 416 4.2E-171 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_10405 e6561b1e50ff41e9776b0104d062ac7b 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 760 0.0 T 14-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 RY45_10405 e6561b1e50ff41e9776b0104d062ac7b 760 PIRSF PIRSF000379 8 760 0.0 T 14-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 RY45_10405 e6561b1e50ff41e9776b0104d062ac7b 760 SUPERFAMILY SSF51998 4 758 6.87E-287 T 14-10-2018 RY45_10405 e6561b1e50ff41e9776b0104d062ac7b 760 Gene3D G3DSA:3.20.70.20 2 760 0.0 T 14-10-2018 RY45_10405 e6561b1e50ff41e9776b0104d062ac7b 760 Pfam PF02901 Pyruvate formate lyase-like 26 614 3.0E-200 T 14-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 RY45_10405 e6561b1e50ff41e9776b0104d062ac7b 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 14-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RY45_10405 e6561b1e50ff41e9776b0104d062ac7b 760 Pfam PF01228 Glycine radical 630 741 1.3E-42 T 14-10-2018 IPR001150 Glycine radical domain GO:0003824 RY45_07020 015db0bf126860b544e951b9cd8ba58f 332 Pfam PF04338 Protein of unknown function, DUF481 102 305 2.6E-16 T 14-10-2018 IPR007433 Protein of unknown function DUF481 RY45_07650 7169263265b724b8755776796f1baf4c 101 Pfam PF14359 Domain of unknown function (DUF4406) 4 91 1.4E-29 T 14-10-2018 IPR025518 Protein of unknown function DUF4406 RY45_07650 7169263265b724b8755776796f1baf4c 101 Gene3D G3DSA:3.40.50.450 1 100 8.4E-11 T 14-10-2018 RY45_07650 7169263265b724b8755776796f1baf4c 101 SUPERFAMILY SSF52309 1 97 3.2E-27 T 14-10-2018 RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 Gene3D G3DSA:3.40.50.720 1 253 6.5E-79 T 14-10-2018 RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.7E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.4E-8 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 4.4E-8 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 SUPERFAMILY SSF51735 2 251 2.29E-78 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_12700 e57a98178facb7e1dd750c817bedaef0 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 4.1E-65 T 14-10-2018 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 Pfam PF05746 DALR anticodon binding domain 582 679 4.1E-9 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 9.9E-299 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 3.1E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 3.1E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 3.1E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 3.1E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 3.1E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 SUPERFAMILY SSF109604 342 491 1.04E-14 T 14-10-2018 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 5.9E-208 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.337 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00925 a90c6940b6fff91812df5fa181a34176 689 SMART SM00836 585 688 0.0012 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 SUPERFAMILY SSF47413 1 59 2.68E-18 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.9E-20 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 SMART SM00354 1 71 7.1E-35 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 Gene3D G3DSA:3.40.50.2300 69 322 3.0E-88 T 14-10-2018 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.0E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.0E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 Gene3D G3DSA:1.10.260.40 3 59 4.2E-24 T 14-10-2018 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 Gene3D G3DSA:3.40.50.2300 161 323 3.0E-88 T 14-10-2018 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 Pfam PF13377 Periplasmic binding protein-like domain 169 330 2.7E-39 T 14-10-2018 RY45_00845 639560497d47a98d3ebb2776a2cc1ee2 334 SUPERFAMILY SSF53822 60 331 1.05E-90 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_02360 dd1da9340b479897265d95f547433bff 298 SUPERFAMILY SSF53697 8 251 6.9E-74 T 14-10-2018 RY45_02360 dd1da9340b479897265d95f547433bff 298 Pfam PF13580 SIS domain 43 166 1.4E-9 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_02360 dd1da9340b479897265d95f547433bff 298 Gene3D G3DSA:1.10.8.1080 221 297 4.6E-30 T 14-10-2018 RY45_02360 dd1da9340b479897265d95f547433bff 298 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 8 296 7.7E-131 T 14-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 RY45_02360 dd1da9340b479897265d95f547433bff 298 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 4 297 42.96 T 14-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 RY45_02360 dd1da9340b479897265d95f547433bff 298 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 187 204 - T 14-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 RY45_02360 dd1da9340b479897265d95f547433bff 298 Gene3D G3DSA:3.40.50.10490 2 220 2.1E-82 T 14-10-2018 RY45_10140 72288eec26eed160e4b016866cd1bd58 422 SMART SM00304 183 236 7.2E-4 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_10140 72288eec26eed160e4b016866cd1bd58 422 Pfam PF17152 Periplasmic sensor domain 45 146 9.1E-29 T 14-10-2018 IPR033417 Periplasmic sensor domain CHASE8 RY45_10140 72288eec26eed160e4b016866cd1bd58 422 Gene3D G3DSA:3.30.70.270 243 412 2.3E-55 T 14-10-2018 RY45_10140 72288eec26eed160e4b016866cd1bd58 422 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 247 406 2.8E-45 T 14-10-2018 IPR000160 GGDEF domain RY45_10140 72288eec26eed160e4b016866cd1bd58 422 SMART SM00267 238 410 2.1E-57 T 14-10-2018 IPR000160 GGDEF domain RY45_10140 72288eec26eed160e4b016866cd1bd58 422 Pfam PF00990 Diguanylate cyclase, GGDEF domain 249 405 1.2E-46 T 14-10-2018 IPR000160 GGDEF domain RY45_10140 72288eec26eed160e4b016866cd1bd58 422 SUPERFAMILY SSF55073 254 406 8.63E-47 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_20230 621e6e9585d6e905b4a2abf863302492 299 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 185 3.4E-48 T 14-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 RY45_20230 621e6e9585d6e905b4a2abf863302492 299 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 140 7.9E-14 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RY45_20230 621e6e9585d6e905b4a2abf863302492 299 SUPERFAMILY SSF64518 1 298 2.62E-52 T 14-10-2018 RY45_08820 3ab7e4401281eee3db0160d9ce015d20 186 SMART SM00867 22 184 1.1E-68 T 14-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RY45_08820 3ab7e4401281eee3db0160d9ce015d20 186 Gene3D G3DSA:2.40.128.110 21 186 5.5E-54 T 14-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RY45_08820 3ab7e4401281eee3db0160d9ce015d20 186 Pfam PF04264 YceI-like domain 23 180 1.9E-42 T 14-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RY45_08820 3ab7e4401281eee3db0160d9ce015d20 186 SUPERFAMILY SSF101874 19 185 2.75E-56 T 14-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RY45_19775 222358496ca4c09377d8a56f9a62099e 315 SMART SM00354 4 74 3.1E-32 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 SUPERFAMILY SSF53822 63 308 2.94E-58 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_19775 222358496ca4c09377d8a56f9a62099e 315 Gene3D G3DSA:3.40.50.2300 163 279 1.6E-64 T 14-10-2018 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 Pfam PF13377 Periplasmic binding protein-like domain 169 302 2.7E-16 T 14-10-2018 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 Gene3D G3DSA:3.40.50.2300 68 301 1.6E-64 T 14-10-2018 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 Gene3D G3DSA:1.10.260.40 3 62 4.2E-21 T 14-10-2018 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 4.9E-20 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 302 3.1E-131 T 14-10-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 4.2E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 4.2E-5 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 14-10-2018 RY45_19775 222358496ca4c09377d8a56f9a62099e 315 SUPERFAMILY SSF47413 3 61 4.18E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_18300 255ecb7bc094071666a4e3369e52a451 288 Pfam PF10987 Protein of unknown function (DUF2806) 43 259 6.0E-74 T 14-10-2018 IPR021254 Protein of unknown function DUF2806 RY45_18300 255ecb7bc094071666a4e3369e52a451 288 TIGRFAM TIGR03899 TIGR03899: TIGR03899 family protein 23 268 2.6E-90 T 14-10-2018 IPR021254 Protein of unknown function DUF2806 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 8 245 2.6E-68 T 14-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW RY45_09580 e064f12a293daa5528f77377b687eeb9 258 SUPERFAMILY SSF48452 42 212 1.06E-25 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 SMART SM00028 146 179 0.26 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 SMART SM00028 110 143 27.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 SMART SM00028 76 109 6.3E-4 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 SMART SM00028 42 75 0.044 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 Pfam PF13431 Tetratricopeptide repeat 99 131 5.1E-9 T 14-10-2018 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 Pfam PF13181 Tetratricopeptide repeat 48 75 0.051 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 Pfam PF13181 Tetratricopeptide repeat 146 178 0.021 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09580 e064f12a293daa5528f77377b687eeb9 258 Gene3D G3DSA:1.25.40.10 39 256 1.4E-46 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_18810 62022ad476b06f7f656aa2d7ab9bc7be 153 SUPERFAMILY SSF103039 1 153 3.79E-36 T 14-10-2018 IPR028976 CheC-like superfamily RY45_18810 62022ad476b06f7f656aa2d7ab9bc7be 153 Pfam PF13690 Chemotaxis phosphatase CheX 42 140 1.5E-22 T 14-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain RY45_18810 62022ad476b06f7f656aa2d7ab9bc7be 153 Gene3D G3DSA:3.40.1550.10 1 153 1.7E-43 T 14-10-2018 IPR028976 CheC-like superfamily RY45_20305 1a0d9afd7840d71efb25f33701cfd13d 443 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 26 438 4.7E-188 T 14-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_20305 1a0d9afd7840d71efb25f33701cfd13d 443 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 351 360 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_20305 1a0d9afd7840d71efb25f33701cfd13d 443 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 360 1.8E-69 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_20305 1a0d9afd7840d71efb25f33701cfd13d 443 SUPERFAMILY SSF52540 97 366 1.11E-90 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20305 1a0d9afd7840d71efb25f33701cfd13d 443 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 7 440 2.2E-166 T 14-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_20305 1a0d9afd7840d71efb25f33701cfd13d 443 Gene3D G3DSA:3.40.50.12240 18 442 3.8E-146 T 14-10-2018 RY45_06315 e51a5c4498b7c13f0cd23db0fc2a3448 258 Gene3D G3DSA:3.40.1180.10 4 243 4.5E-91 T 14-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 RY45_06315 e51a5c4498b7c13f0cd23db0fc2a3448 258 SUPERFAMILY SSF64005 13 238 5.1E-84 T 14-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 RY45_06315 e51a5c4498b7c13f0cd23db0fc2a3448 258 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 14-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 RY45_06315 e51a5c4498b7c13f0cd23db0fc2a3448 258 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 15 242 1.2E-96 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RY45_06315 e51a5c4498b7c13f0cd23db0fc2a3448 258 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 39.216 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RY45_06315 e51a5c4498b7c13f0cd23db0fc2a3448 258 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 5.8E-78 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RY45_04380 e165f69347fb027641819aad92e199ca 1054 SUPERFAMILY SSF53720 550 1038 5.76E-130 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_04380 e165f69347fb027641819aad92e199ca 1054 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 835 846 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RY45_04380 e165f69347fb027641819aad92e199ca 1054 SUPERFAMILY SSF81935 18 189 9.29E-63 T 14-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 RY45_04380 e165f69347fb027641819aad92e199ca 1054 Gene3D G3DSA:3.40.309.10 810 1002 1.1E-153 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_04380 e165f69347fb027641819aad92e199ca 1054 SUPERFAMILY SSF51730 190 532 2.63E-111 T 14-10-2018 IPR029041 FAD-linked oxidoreductase-like RY45_04380 e165f69347fb027641819aad92e199ca 1054 PIRSF PIRSF000197 4 1050 0.0 T 14-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 RY45_04380 e165f69347fb027641819aad92e199ca 1054 Gene3D G3DSA:3.20.20.220 147 525 1.5E-127 T 14-10-2018 RY45_04380 e165f69347fb027641819aad92e199ca 1054 Pfam PF01619 Proline dehydrogenase 197 489 1.7E-88 T 14-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 RY45_04380 e165f69347fb027641819aad92e199ca 1054 Pfam PF00171 Aldehyde dehydrogenase family 578 1034 2.2E-117 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_04380 e165f69347fb027641819aad92e199ca 1054 Gene3D G3DSA:3.40.605.10 549 1034 1.1E-153 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_04380 e165f69347fb027641819aad92e199ca 1054 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 74 187 2.0E-45 T 14-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 RY45_04380 e165f69347fb027641819aad92e199ca 1054 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 526 1031 2.0E-210 T 14-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 RY45_10890 79eacc6d4a35f8ec6804ae176f53e5ff 295 Gene3D G3DSA:1.10.10.60 188 247 7.0E-17 T 14-10-2018 RY45_10890 79eacc6d4a35f8ec6804ae176f53e5ff 295 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 241 282 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_10890 79eacc6d4a35f8ec6804ae176f53e5ff 295 SUPERFAMILY SSF46689 189 237 7.17E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10890 79eacc6d4a35f8ec6804ae176f53e5ff 295 Gene3D G3DSA:1.10.10.60 248 294 2.0E-12 T 14-10-2018 RY45_10890 79eacc6d4a35f8ec6804ae176f53e5ff 295 Pfam PF12833 Helix-turn-helix domain 210 287 3.6E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_10890 79eacc6d4a35f8ec6804ae176f53e5ff 295 SMART SM00342 204 286 2.0E-28 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_10890 79eacc6d4a35f8ec6804ae176f53e5ff 295 SUPERFAMILY SSF46689 240 289 1.75E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_01835 c8000855ba156733468f3259ae764120 103 SUPERFAMILY SSF54999 5 101 1.23E-36 T 14-10-2018 IPR036838 Ribosomal protein S10 domain superfamily RY45_01835 c8000855ba156733468f3259ae764120 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 14-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01835 c8000855ba156733468f3259ae764120 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.412 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01835 c8000855ba156733468f3259ae764120 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01835 c8000855ba156733468f3259ae764120 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01835 c8000855ba156733468f3259ae764120 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01835 c8000855ba156733468f3259ae764120 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 3.0E-35 T 14-10-2018 IPR027486 Ribosomal protein S10 domain RY45_01835 c8000855ba156733468f3259ae764120 103 SMART SM01403 7 101 9.2E-57 T 14-10-2018 IPR027486 Ribosomal protein S10 domain RY45_01835 c8000855ba156733468f3259ae764120 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.3E-46 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01835 c8000855ba156733468f3259ae764120 103 Gene3D G3DSA:3.30.70.600 1 103 4.0E-38 T 14-10-2018 IPR036838 Ribosomal protein S10 domain superfamily RY45_22145 64a9bc4f84cbca84ac7b29e5d678c88e 156 SUPERFAMILY SSF81573 63 121 8.5E-15 T 14-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily RY45_22145 64a9bc4f84cbca84ac7b29e5d678c88e 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 2.2E-56 T 14-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 RY45_22145 64a9bc4f84cbca84ac7b29e5d678c88e 156 Gene3D G3DSA:1.20.5.620 62 122 1.9E-22 T 14-10-2018 RY45_22145 64a9bc4f84cbca84ac7b29e5d678c88e 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 12.98 T 14-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RY45_22145 64a9bc4f84cbca84ac7b29e5d678c88e 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 2.3E-37 T 14-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RY45_03730 d0b7337cc9cda8b3275980e241282289 216 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 3 106 1.5E-16 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_03730 d0b7337cc9cda8b3275980e241282289 216 SUPERFAMILY SSF161098 4 197 2.49E-38 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03730 d0b7337cc9cda8b3275980e241282289 216 Gene3D G3DSA:1.10.3720.10 1 214 2.2E-46 T 14-10-2018 IPR035906 MetI-like superfamily RY45_03730 d0b7337cc9cda8b3275980e241282289 216 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 202 5.5E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_14140 c01796bd45b45570459bd0e794a862b4 325 SMART SM00342 239 321 1.8E-19 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_14140 c01796bd45b45570459bd0e794a862b4 325 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 9 189 3.9E-12 T 14-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RY45_14140 c01796bd45b45570459bd0e794a862b4 325 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 275 317 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_14140 c01796bd45b45570459bd0e794a862b4 325 Gene3D G3DSA:1.10.10.60 222 325 9.5E-25 T 14-10-2018 RY45_14140 c01796bd45b45570459bd0e794a862b4 325 SUPERFAMILY SSF46689 275 323 1.22E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_14140 c01796bd45b45570459bd0e794a862b4 325 Pfam PF12833 Helix-turn-helix domain 245 322 3.8E-19 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_16845 6ade847b8dd791d1d319419ea46bff86 167 Pfam PF00583 Acetyltransferase (GNAT) family 70 155 4.3E-15 T 14-10-2018 IPR000182 GNAT domain RY45_16845 6ade847b8dd791d1d319419ea46bff86 167 Gene3D G3DSA:3.40.630.30 5 166 6.6E-36 T 14-10-2018 RY45_16845 6ade847b8dd791d1d319419ea46bff86 167 SUPERFAMILY SSF55729 5 160 5.23E-24 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_03830 5691084dc4847945563be07c2b48ac76 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 40.143 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 SUPERFAMILY SSF55831 1 264 2.22E-129 T 14-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 14-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 4.4E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 4.4E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 4.4E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 4.4E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 4.4E-47 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 Pfam PF00303 Thymidylate synthase 3 264 9.2E-126 T 14-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 Gene3D G3DSA:3.30.572.10 1 264 1.1E-133 T 14-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 7.4E-93 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_03830 5691084dc4847945563be07c2b48ac76 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 3 85 2.4E-40 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RY45_12920 afded77d445600e6ead99fddc08c76e1 130 Pfam PF01124 MAPEG family 5 123 4.9E-27 T 14-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RY45_12920 afded77d445600e6ead99fddc08c76e1 130 SUPERFAMILY SSF161084 2 124 5.1E-26 T 14-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily RY45_12920 afded77d445600e6ead99fddc08c76e1 130 Gene3D G3DSA:1.20.120.550 2 129 6.8E-22 T 14-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily RY45_19575 7da7ca26d348b224d3eaafb97f11c69e 548 Gene3D G3DSA:3.40.50.300 27 185 7.0E-15 T 14-10-2018 RY45_19575 7da7ca26d348b224d3eaafb97f11c69e 548 SMART SM00382 42 186 3.2E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_19575 7da7ca26d348b224d3eaafb97f11c69e 548 Pfam PF01471 Putative peptidoglycan binding domain 453 504 3.0E-10 T 14-10-2018 IPR002477 Peptidoglycan binding-like RY45_19575 7da7ca26d348b224d3eaafb97f11c69e 548 Gene3D G3DSA:1.10.101.10 439 508 8.4E-55 T 14-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RY45_19575 7da7ca26d348b224d3eaafb97f11c69e 548 SUPERFAMILY SSF52540 5 260 5.04E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19575 7da7ca26d348b224d3eaafb97f11c69e 548 Gene3D G3DSA:3.90.70.10 338 438 8.4E-55 T 14-10-2018 RY45_19575 7da7ca26d348b224d3eaafb97f11c69e 548 Pfam PF13401 AAA domain 42 171 2.1E-23 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_19575 7da7ca26d348b224d3eaafb97f11c69e 548 SUPERFAMILY SSF47090 449 515 2.75E-11 T 14-10-2018 IPR036365 PGBD-like superfamily RY45_11540 93c41ce4182052ad3d50d4b0cf7caf38 210 Pfam PF04403 Paraquat-inducible protein A 47 197 3.5E-31 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like RY45_19770 146faa425ad25241c486fc58083c43ef 476 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_19770 146faa425ad25241c486fc58083c43ef 476 Pfam PF02378 Phosphotransferase system, EIIC 112 406 3.3E-32 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_19770 146faa425ad25241c486fc58083c43ef 476 Pfam PF00367 phosphotransferase system, EIIB 12 43 1.7E-13 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_19770 146faa425ad25241c486fc58083c43ef 476 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 8 462 4.8E-207 T 14-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 RY45_19770 146faa425ad25241c486fc58083c43ef 476 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 1.0E-17 T 14-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RY45_19770 146faa425ad25241c486fc58083c43ef 476 SUPERFAMILY SSF55604 10 82 1.7E-20 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_19770 146faa425ad25241c486fc58083c43ef 476 Gene3D G3DSA:3.30.1360.60 2 79 8.7E-24 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_21020 022ac6a55b64e72d258ef2309cd9aed3 118 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 3 118 7.5E-45 T 14-10-2018 IPR017462 Sulphur relay, TusC/DsrF RY45_21020 022ac6a55b64e72d258ef2309cd9aed3 118 SUPERFAMILY SSF75169 1 118 5.23E-35 T 14-10-2018 IPR027396 DsrEFH-like RY45_21020 022ac6a55b64e72d258ef2309cd9aed3 118 Pfam PF02635 DsrE/DsrF-like family 3 118 5.6E-25 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein RY45_21020 022ac6a55b64e72d258ef2309cd9aed3 118 Gene3D G3DSA:3.40.1260.10 1 118 1.0E-35 T 14-10-2018 IPR027396 DsrEFH-like RY45_14875 0fdda220bf09d8baaff8cf814bc03373 398 SMART SM00471 155 291 6.3E-7 T 14-10-2018 IPR003607 HD/PDEase domain RY45_14875 0fdda220bf09d8baaff8cf814bc03373 398 Pfam PF11871 Domain of unknown function (DUF3391) 10 127 4.9E-13 T 14-10-2018 IPR021812 Protein of unknown function DUF3391 RY45_14875 0fdda220bf09d8baaff8cf814bc03373 398 TIGRFAM TIGR00277 HDIG: HDIG domain 159 250 1.8E-7 T 14-10-2018 IPR006675 HDIG domain RY45_14875 0fdda220bf09d8baaff8cf814bc03373 398 Pfam PF13487 HD domain 210 272 1.3E-18 T 14-10-2018 RY45_14875 0fdda220bf09d8baaff8cf814bc03373 398 SUPERFAMILY SSF109604 151 321 3.73E-33 T 14-10-2018 RY45_14875 0fdda220bf09d8baaff8cf814bc03373 398 Gene3D G3DSA:1.10.3210.10 9 323 7.2E-71 T 14-10-2018 RY45_11340 e872374658fc734ad23847fa12aa3c1b 302 SUPERFAMILY SSF52402 15 233 4.19E-54 T 14-10-2018 RY45_11340 e872374658fc734ad23847fa12aa3c1b 302 Gene3D G3DSA:3.40.50.620 2 260 9.3E-48 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_11340 e872374658fc734ad23847fa12aa3c1b 302 PIRSF PIRSF004976 2 269 8.5E-73 T 14-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 RY45_11340 e872374658fc734ad23847fa12aa3c1b 302 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 8 267 58.053 T 14-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 RY45_11340 e872374658fc734ad23847fa12aa3c1b 302 Pfam PF01171 PP-loop family 39 201 1.6E-14 T 14-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 RY45_14860 3e09cfc2392da066723117f2862fcece 545 Gene3D G3DSA:3.10.105.10 301 514 4.5E-157 T 14-10-2018 RY45_14860 3e09cfc2392da066723117f2862fcece 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 86 462 4.3E-77 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_14860 3e09cfc2392da066723117f2862fcece 545 Gene3D G3DSA:3.90.76.10 75 199 4.5E-157 T 14-10-2018 RY45_14860 3e09cfc2392da066723117f2862fcece 545 PIRSF PIRSF002741 14 545 1.4E-96 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_14860 3e09cfc2392da066723117f2862fcece 545 Gene3D G3DSA:3.40.190.10 49 525 4.5E-157 T 14-10-2018 RY45_14860 3e09cfc2392da066723117f2862fcece 545 SUPERFAMILY SSF53850 36 531 1.14E-129 T 14-10-2018 RY45_16210 a482552beae7c2bf9b258a2c9dd3c107 222 Gene3D G3DSA:3.40.470.10 1 222 3.8E-103 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_16210 a482552beae7c2bf9b258a2c9dd3c107 222 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 2 211 3.3E-85 T 14-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_16210 a482552beae7c2bf9b258a2c9dd3c107 222 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 54 63 - T 14-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_16210 a482552beae7c2bf9b258a2c9dd3c107 222 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 1 218 39.713 T 14-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_16210 a482552beae7c2bf9b258a2c9dd3c107 222 Pfam PF03167 Uracil DNA glycosylase superfamily 51 206 1.3E-25 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_16210 a482552beae7c2bf9b258a2c9dd3c107 222 SMART SM00986 46 207 7.7E-41 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_16210 a482552beae7c2bf9b258a2c9dd3c107 222 SMART SM00987 46 207 7.7E-41 T 14-10-2018 RY45_16210 a482552beae7c2bf9b258a2c9dd3c107 222 SUPERFAMILY SSF52141 3 218 5.67E-94 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RY45_14795 d5b9c200c97f7ee965521df05b86dfa4 223 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 220 26.165 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_14795 d5b9c200c97f7ee965521df05b86dfa4 223 Pfam PF02107 Flagellar L-ring protein 43 222 3.1E-60 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_14795 d5b9c200c97f7ee965521df05b86dfa4 223 PRINTS PR01008 Flagellar L-ring protein signature 136 151 1.7E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_14795 d5b9c200c97f7ee965521df05b86dfa4 223 PRINTS PR01008 Flagellar L-ring protein signature 64 76 1.7E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_14795 d5b9c200c97f7ee965521df05b86dfa4 223 PRINTS PR01008 Flagellar L-ring protein signature 199 213 1.7E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_14795 d5b9c200c97f7ee965521df05b86dfa4 223 PRINTS PR01008 Flagellar L-ring protein signature 162 178 1.7E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_14795 d5b9c200c97f7ee965521df05b86dfa4 223 PRINTS PR01008 Flagellar L-ring protein signature 183 197 1.7E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_12755 49ccdc66fa5283697940fbb0cbc087e0 454 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 366 1.3E-137 T 14-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RY45_12755 49ccdc66fa5283697940fbb0cbc087e0 454 Pfam PF13742 OB-fold nucleic acid binding domain 16 109 1.7E-30 T 14-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RY45_12755 49ccdc66fa5283697940fbb0cbc087e0 454 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 449 31.191 T 14-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RY45_12755 49ccdc66fa5283697940fbb0cbc087e0 454 Pfam PF02601 Exonuclease VII, large subunit 132 446 3.7E-98 T 14-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 PRINTS PR00721 Stomatin signature 131 154 1.3E-28 T 14-10-2018 IPR001972 Stomatin family GO:0016020 RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 PRINTS PR00721 Stomatin signature 155 173 1.3E-28 T 14-10-2018 IPR001972 Stomatin family GO:0016020 RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 PRINTS PR00721 Stomatin signature 174 195 1.3E-28 T 14-10-2018 IPR001972 Stomatin family GO:0016020 RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 PRINTS PR00721 Stomatin signature 111 128 1.3E-28 T 14-10-2018 IPR001972 Stomatin family GO:0016020 RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 PRINTS PR00721 Stomatin signature 76 97 1.3E-28 T 14-10-2018 IPR001972 Stomatin family GO:0016020 RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 SMART SM00244 21 179 6.2E-57 T 14-10-2018 IPR001107 Band 7 domain RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 Pfam PF01145 SPFH domain / Band 7 family 25 194 2.9E-30 T 14-10-2018 IPR001107 Band 7 domain RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 Gene3D G3DSA:3.30.479.30 49 181 4.9E-41 T 14-10-2018 RY45_18340 e5eda40c839a94fcbd1776d8d5423609 306 SUPERFAMILY SSF117892 52 186 1.14E-37 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily RY45_07520 f3698de24fe51426f448883c8d98faa5 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 3.5E-7 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_07520 f3698de24fe51426f448883c8d98faa5 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 3.5E-7 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_07520 f3698de24fe51426f448883c8d98faa5 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 3.5E-7 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_07520 f3698de24fe51426f448883c8d98faa5 154 Pfam PF13411 MerR HTH family regulatory protein 1 68 1.5E-16 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_07520 f3698de24fe51426f448883c8d98faa5 154 Gene3D G3DSA:1.10.1660.10 2 150 6.9E-26 T 14-10-2018 RY45_07520 f3698de24fe51426f448883c8d98faa5 154 SMART SM00422 1 70 3.2E-21 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_07520 f3698de24fe51426f448883c8d98faa5 154 SUPERFAMILY SSF46955 1 112 2.34E-25 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 8.0E-38 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 8.0E-38 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 8.0E-38 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 8.0E-38 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 8.0E-38 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 SUPERFAMILY SSF54919 1 140 1.02E-58 T 14-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 Pfam PF00334 Nucleoside diphosphate kinase 4 138 9.3E-56 T 14-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.8 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 SMART SM00562 3 140 5.0E-86 T 14-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 Gene3D G3DSA:3.30.70.141 1 142 4.0E-58 T 14-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_09570 29dc87a12f09b6a2a5986e5ccac637e1 142 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 14-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_17645 304666571746f8e60e7ba951c649b9a4 333 SMART SM00382 39 231 2.0E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17645 304666571746f8e60e7ba951c649b9a4 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 318 5.2E-26 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_17645 304666571746f8e60e7ba951c649b9a4 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 298 1.2E-15 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_17645 304666571746f8e60e7ba951c649b9a4 333 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_17645 304666571746f8e60e7ba951c649b9a4 333 Gene3D G3DSA:3.40.50.300 1 323 2.7E-100 T 14-10-2018 RY45_17645 304666571746f8e60e7ba951c649b9a4 333 Pfam PF00005 ABC transporter 31 181 1.4E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_17645 304666571746f8e60e7ba951c649b9a4 333 SUPERFAMILY SSF52540 38 307 1.27E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 3.4E-74 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 92 1.3E-15 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.117 T 14-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.9E-44 T 14-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 SUPERFAMILY SSF50615 10 94 3.14E-26 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 5.9E-255 T 14-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 Gene3D G3DSA:1.20.150.20 383 513 2.8E-47 T 14-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 SUPERFAMILY SSF52540 96 381 4.52E-96 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 SUPERFAMILY SSF47917 383 511 1.33E-44 T 14-10-2018 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 Gene3D G3DSA:3.40.50.300 94 382 5.1E-133 T 14-10-2018 RY45_22135 0ff020e36f0627a7f8a1365bcaabf802 513 Gene3D G3DSA:2.40.30.20 1 93 2.9E-30 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_01415 25fc828c0a87f21c0d3129e44afdc767 113 Gene3D G3DSA:2.30.30.40 61 113 4.4E-8 T 14-10-2018 RY45_01415 25fc828c0a87f21c0d3129e44afdc767 113 SUPERFAMILY SSF50044 8 59 5.67E-6 T 14-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 RY45_01415 25fc828c0a87f21c0d3129e44afdc767 113 PIRSF PIRSF034961 1 112 9.0E-30 T 14-10-2018 IPR014593 Uncharacterised conserved protein UCP034961, SH3-2 RY45_01415 25fc828c0a87f21c0d3129e44afdc767 113 SUPERFAMILY SSF50044 62 112 8.56E-9 T 14-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 RY45_01415 25fc828c0a87f21c0d3129e44afdc767 113 SMART SM00326 61 113 2.4E-6 T 14-10-2018 IPR001452 SH3 domain GO:0005515 RY45_05205 c9f2b5e274f4fd865a0ee752588b8133 120 Pfam PF04379 ApaG domain 17 97 3.8E-30 T 14-10-2018 IPR007474 ApaG domain RY45_05205 c9f2b5e274f4fd865a0ee752588b8133 120 SUPERFAMILY SSF110069 5 120 7.06E-41 T 14-10-2018 IPR036767 ApaG domain superfamily RY45_05205 c9f2b5e274f4fd865a0ee752588b8133 120 Gene3D G3DSA:2.60.40.1470 2 120 1.7E-40 T 14-10-2018 IPR036767 ApaG domain superfamily RY45_10390 a11cd05d99dc3cb353461dade09d2291 380 SUPERFAMILY SSF53383 13 372 1.16E-79 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_10390 a11cd05d99dc3cb353461dade09d2291 380 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 14 371 2.2E-148 T 14-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RY45_10390 a11cd05d99dc3cb353461dade09d2291 380 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 380 193.486 T 14-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RY45_10390 a11cd05d99dc3cb353461dade09d2291 380 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 12 376 3.9E-170 T 14-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RY45_10390 a11cd05d99dc3cb353461dade09d2291 380 Pfam PF00266 Aminotransferase class-V 65 320 1.7E-24 T 14-10-2018 IPR000192 Aminotransferase class V domain RY45_10390 a11cd05d99dc3cb353461dade09d2291 380 Gene3D G3DSA:3.40.640.10 24 273 5.1E-116 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_10390 a11cd05d99dc3cb353461dade09d2291 380 PIRSF PIRSF000524 8 376 3.1E-56 T 14-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 RY45_10390 a11cd05d99dc3cb353461dade09d2291 380 Gene3D G3DSA:3.90.1150.10 16 362 5.1E-116 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_17855 ab62c85996f4c6631b4310b3d869aef4 758 Pfam PF05547 Immune inhibitor A peptidase M6 119 753 1.2E-253 T 14-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 RY45_17855 ab62c85996f4c6631b4310b3d869aef4 758 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 133 453 1.3E-81 T 14-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 RY45_17855 ab62c85996f4c6631b4310b3d869aef4 758 PIRSF PIRSF007519 1 758 9.4E-279 T 14-10-2018 IPR012300 Peptidase M6, InhA RY45_17855 ab62c85996f4c6631b4310b3d869aef4 758 SUPERFAMILY SSF55486 212 392 1.82E-17 T 14-10-2018 RY45_09705 d0c086d73d49464892135221f91f0bf1 134 Gene3D G3DSA:1.20.58.1610 1 122 1.4E-41 T 14-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09705 d0c086d73d49464892135221f91f0bf1 134 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 24 121 7.2E-34 T 14-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09705 d0c086d73d49464892135221f91f0bf1 134 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 5 122 20.492 T 14-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RY45_09135 9558bc2f57ba95e86d5563538c430e36 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 286 6.6E-18 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_09135 9558bc2f57ba95e86d5563538c430e36 296 SUPERFAMILY SSF161098 10 296 1.12E-67 T 14-10-2018 IPR035906 MetI-like superfamily RY45_09135 9558bc2f57ba95e86d5563538c430e36 296 Gene3D G3DSA:1.10.3720.10 1 283 7.6E-73 T 14-10-2018 IPR035906 MetI-like superfamily RY45_10605 b5182ad59fd2293b18df84f265aafb89 221 PIRSF PIRSF006171 1 221 3.5E-73 T 14-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 RY45_10605 b5182ad59fd2293b18df84f265aafb89 221 SMART SM00448 2 115 1.8E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10605 b5182ad59fd2293b18df84f265aafb89 221 SUPERFAMILY SSF46785 162 219 2.49E-6 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10605 b5182ad59fd2293b18df84f265aafb89 221 Pfam PF12431 Transcriptional regulator 131 159 2.3E-7 T 14-10-2018 IPR028141 Transcriptional regulator RY45_10605 b5182ad59fd2293b18df84f265aafb89 221 Gene3D G3DSA:3.40.50.12740 2 205 5.3E-30 T 14-10-2018 RY45_10605 b5182ad59fd2293b18df84f265aafb89 221 Pfam PF00072 Response regulator receiver domain 4 115 1.2E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_10605 b5182ad59fd2293b18df84f265aafb89 221 SUPERFAMILY SSF52172 2 129 6.26E-34 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05115 e47b74175f43ef6ef3008a78036aedcf 87 Pfam PF17209 Hfq protein 7 68 4.8E-31 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RY45_05115 e47b74175f43ef6ef3008a78036aedcf 87 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 6.6E-30 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RY45_05115 e47b74175f43ef6ef3008a78036aedcf 87 Gene3D G3DSA:2.30.30.100 1 72 1.6E-34 T 14-10-2018 RY45_05115 e47b74175f43ef6ef3008a78036aedcf 87 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.549 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RY45_05115 e47b74175f43ef6ef3008a78036aedcf 87 SUPERFAMILY SSF50182 7 69 1.67E-24 T 14-10-2018 IPR010920 LSM domain superfamily RY45_20870 2cd599c89a56add0324d111b94c85c91 482 SUPERFAMILY SSF56634 3 477 1.57E-207 T 14-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 PIRSF PIRSF038928 1 482 4.7E-226 T 14-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 ProSitePatterns PS00438 Catalase proximal active site signature. 43 59 - T 14-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 Pfam PF06628 Catalase-related immune-responsive 417 477 1.3E-19 T 14-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 SMART SM01060 7 392 6.0E-285 T 14-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 Pfam PF00199 Catalase 9 389 8.5E-193 T 14-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 333 341 - T 14-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 Gene3D G3DSA:2.40.180.10 1 482 4.6E-223 T 14-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 PRINTS PR00067 Catalase signature 83 101 8.8E-76 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 PRINTS PR00067 Catalase signature 288 315 8.8E-76 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 PRINTS PR00067 Catalase signature 20 43 8.8E-76 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 PRINTS PR00067 Catalase signature 104 121 8.8E-76 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 PRINTS PR00067 Catalase signature 123 141 8.8E-76 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_20870 2cd599c89a56add0324d111b94c85c91 482 PRINTS PR00067 Catalase signature 320 346 8.8E-76 T 14-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RY45_18440 0039c248f068a85759434a1e9e778205 196 Pfam PF01810 LysE type translocator 19 186 5.8E-19 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_03965 3f60b6649c80af0653096844cb446a47 340 SMART SM00267 168 338 2.5E-46 T 14-10-2018 IPR000160 GGDEF domain RY45_03965 3f60b6649c80af0653096844cb446a47 340 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 177 336 3.7E-36 T 14-10-2018 IPR000160 GGDEF domain RY45_03965 3f60b6649c80af0653096844cb446a47 340 Pfam PF00990 Diguanylate cyclase, GGDEF domain 179 334 1.3E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_03965 3f60b6649c80af0653096844cb446a47 340 Gene3D G3DSA:3.30.70.270 164 337 1.3E-47 T 14-10-2018 RY45_03965 3f60b6649c80af0653096844cb446a47 340 SUPERFAMILY SSF55073 184 336 8.63E-40 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_08250 24f34cd15b3042874b6cad065133309a 512 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 24 182 2.9E-56 T 14-10-2018 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices RY45_08250 24f34cd15b3042874b6cad065133309a 512 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 255 498 2.2E-110 T 14-10-2018 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase RY45_05430 3de4d732a95a06a2beceda1143c600e6 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 4.2E-30 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 RY45_05430 3de4d732a95a06a2beceda1143c600e6 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 4.2E-30 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 RY45_05430 3de4d732a95a06a2beceda1143c600e6 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 4.2E-30 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 RY45_05430 3de4d732a95a06a2beceda1143c600e6 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 4.2E-30 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 RY45_05430 3de4d732a95a06a2beceda1143c600e6 289 Gene3D G3DSA:3.40.50.300 1 289 3.3E-114 T 14-10-2018 RY45_05430 3de4d732a95a06a2beceda1143c600e6 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 5.8E-73 T 14-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 RY45_05430 3de4d732a95a06a2beceda1143c600e6 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 164 177 - T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 RY45_05430 3de4d732a95a06a2beceda1143c600e6 289 SUPERFAMILY SSF52540 4 286 1.14E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14890 a6849cf3e6011963b224bb916b347ed5 298 SUPERFAMILY SSF102114 123 261 4.9E-13 T 14-10-2018 RY45_14890 a6849cf3e6011963b224bb916b347ed5 298 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 2 285 3.6E-96 T 14-10-2018 RY45_14890 a6849cf3e6011963b224bb916b347ed5 298 Pfam PF13353 4Fe-4S single cluster domain 12 153 6.0E-12 T 14-10-2018 RY45_14890 a6849cf3e6011963b224bb916b347ed5 298 ProSitePatterns PS01087 Radical activating enzymes signature. 13 34 - T 14-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 RY45_14890 a6849cf3e6011963b224bb916b347ed5 298 Pfam PF04055 Radical SAM superfamily 20 227 8.0E-25 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_14890 a6849cf3e6011963b224bb916b347ed5 298 PIRSF PIRSF000371 1 298 7.5E-91 T 14-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 RY45_14890 a6849cf3e6011963b224bb916b347ed5 298 Gene3D G3DSA:3.20.20.70 1 72 2.5E-14 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_14890 a6849cf3e6011963b224bb916b347ed5 298 Gene3D G3DSA:3.20.20.70 82 292 3.2E-56 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_20630 dc2333025a70a23e8afd43bbb11005c1 383 Pfam PF03594 Benzoate membrane transport protein 3 377 1.5E-147 T 14-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RY45_20630 dc2333025a70a23e8afd43bbb11005c1 383 TIGRFAM TIGR00843 benE: benzoate transporter 5 378 9.9E-129 T 14-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RY45_06185 7b12c4304cc93e6c0c026a360090a318 335 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 331 3.4E-111 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RY45_06185 7b12c4304cc93e6c0c026a360090a318 335 SUPERFAMILY SSF53659 3 335 7.92E-130 T 14-10-2018 RY45_06185 7b12c4304cc93e6c0c026a360090a318 335 Gene3D G3DSA:3.40.718.10 1 335 6.1E-147 T 14-10-2018 RY45_06185 7b12c4304cc93e6c0c026a360090a318 335 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 227 246 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RY45_06185 7b12c4304cc93e6c0c026a360090a318 335 SMART SM01329 5 331 1.2E-190 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 Pfam PF04055 Radical SAM superfamily 58 206 3.5E-15 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 SUPERFAMILY SSF102114 13 323 7.98E-95 T 14-10-2018 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 PIRSF PIRSF001619 2 326 2.3E-137 T 14-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 SMART SM00876 228 320 1.7E-49 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 228 318 3.6E-20 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 TIGRFAM TIGR00433 bioB: biotin synthase 23 318 5.5E-127 T 14-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 Gene3D G3DSA:3.20.20.70 12 323 9.8E-135 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 Hamap MF_01694 Biotin synthase [bioB]. 13 321 42.243 T 14-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RY45_08115 2dfa637d4517c3b4b6c555d44f533d4b 362 SMART SM00729 51 263 1.4E-40 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_14455 31cc6a55fdafb60dec0154d39f9df5b6 248 SUPERFAMILY SSF53850 27 246 4.84E-34 T 14-10-2018 RY45_14455 31cc6a55fdafb60dec0154d39f9df5b6 248 Gene3D G3DSA:3.40.190.10 109 205 2.4E-26 T 14-10-2018 RY45_14455 31cc6a55fdafb60dec0154d39f9df5b6 248 SMART SM00062 24 248 0.0017 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_14455 31cc6a55fdafb60dec0154d39f9df5b6 248 Gene3D G3DSA:3.40.190.10 30 244 2.4E-26 T 14-10-2018 RY45_14455 31cc6a55fdafb60dec0154d39f9df5b6 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 245 1.8E-20 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_13400 2a8d65f136c93969d75d60364fb6b540 372 Gene3D G3DSA:1.20.1170.10 17 364 3.2E-7 T 14-10-2018 RY45_13400 2a8d65f136c93969d75d60364fb6b540 372 SUPERFAMILY SSF58100 6 360 1.05E-12 T 14-10-2018 RY45_00505 5fe515cada0526896c61507f8789a3ef 62 SUPERFAMILY SSF46575 1 60 2.22E-6 T 14-10-2018 RY45_00505 5fe515cada0526896c61507f8789a3ef 62 Pfam PF11686 Protein of unknown function (DUF3283) 4 60 1.8E-11 T 14-10-2018 IPR021700 Protein of unknown function DUF3283 RY45_16800 4ca427b5691fdfa7fb1c5d36937cdd7a 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 1.7E-27 T 14-10-2018 IPR007454 Uncharacterised protein family UPF0250 RY45_16800 4ca427b5691fdfa7fb1c5d36937cdd7a 87 SUPERFAMILY SSF117991 1 87 1.44E-30 T 14-10-2018 IPR027471 YbeD-like domain superfamily RY45_16800 4ca427b5691fdfa7fb1c5d36937cdd7a 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 25.383 T 14-10-2018 IPR007454 Uncharacterised protein family UPF0250 RY45_16800 4ca427b5691fdfa7fb1c5d36937cdd7a 87 Gene3D G3DSA:3.30.70.260 1 87 1.9E-31 T 14-10-2018 RY45_16085 06743815f9fcfd3cdd1f04078c12327a 367 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 4 367 6.3E-139 T 14-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 RY45_16085 06743815f9fcfd3cdd1f04078c12327a 367 Gene3D G3DSA:3.30.420.40 140 327 4.7E-124 T 14-10-2018 RY45_16085 06743815f9fcfd3cdd1f04078c12327a 367 Gene3D G3DSA:3.30.420.40 10 362 4.7E-124 T 14-10-2018 RY45_16085 06743815f9fcfd3cdd1f04078c12327a 367 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 3 367 40.544 T 14-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 RY45_16085 06743815f9fcfd3cdd1f04078c12327a 367 SUPERFAMILY SSF53067 4 337 5.05E-20 T 14-10-2018 RY45_04630 a836f615951d7a68808371c1157e0801 248 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 3.3E-74 T 14-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RY45_04630 a836f615951d7a68808371c1157e0801 248 SUPERFAMILY SSF64167 1 244 5.23E-84 T 14-10-2018 RY45_04630 a836f615951d7a68808371c1157e0801 248 Gene3D G3DSA:3.40.1210.10 1 247 1.3E-98 T 14-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RY45_04630 a836f615951d7a68808371c1157e0801 248 Pfam PF01975 Survival protein SurE 3 181 1.1E-59 T 14-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RY45_04630 a836f615951d7a68808371c1157e0801 248 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 247 40.797 T 14-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RY45_20275 616ed78774e9ed1ce97834953f41de3c 141 Pfam PF00460 Flagella basal body rod protein 9 32 7.0E-7 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_20275 616ed78774e9ed1ce97834953f41de3c 141 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 139 5.5E-38 T 14-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 RY45_20275 616ed78774e9ed1ce97834953f41de3c 141 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 92 137 5.6E-12 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_16240 dac140a233e7ccaa25d2e95432994b1a 282 SUPERFAMILY SSF53335 4 278 1.03E-55 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_16240 dac140a233e7ccaa25d2e95432994b1a 282 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 276 2.7E-88 T 14-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RY45_16240 dac140a233e7ccaa25d2e95432994b1a 282 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 1 280 44.921 T 14-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RY45_16240 dac140a233e7ccaa25d2e95432994b1a 282 Gene3D G3DSA:3.40.50.150 85 281 2.6E-55 T 14-10-2018 RY45_16240 dac140a233e7ccaa25d2e95432994b1a 282 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 9 281 1.2E-73 T 14-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RY45_16240 dac140a233e7ccaa25d2e95432994b1a 282 Pfam PF05175 Methyltransferase small domain 111 196 8.3E-11 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RY45_16240 dac140a233e7ccaa25d2e95432994b1a 282 Gene3D G3DSA:1.10.8.10 1 84 1.3E-23 T 14-10-2018 RY45_16240 dac140a233e7ccaa25d2e95432994b1a 282 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 185 191 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_10510 3bb17e655bf18e25a4f932f2b22e4968 506 Gene3D G3DSA:1.10.10.1710 440 506 4.7E-24 T 14-10-2018 RY45_10510 3bb17e655bf18e25a4f932f2b22e4968 506 Gene3D G3DSA:3.40.50.620 5 224 1.6E-96 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_10510 3bb17e655bf18e25a4f932f2b22e4968 506 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 4 216 9.6E-64 T 14-10-2018 IPR007357 Deoxyribodipyrimidine photolyase-related protein RY45_10510 3bb17e655bf18e25a4f932f2b22e4968 506 Gene3D G3DSA:1.25.40.80 130 315 1.6E-96 T 14-10-2018 RY45_10510 3bb17e655bf18e25a4f932f2b22e4968 506 SUPERFAMILY SSF48173 224 492 2.75E-57 T 14-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 RY45_10510 3bb17e655bf18e25a4f932f2b22e4968 506 Gene3D G3DSA:1.10.579.10 319 439 1.0E-53 T 14-10-2018 RY45_00835 6d34e3fe4547952910bcf7a5d7e74c4c 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 1.6E-55 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RY45_06470 ef4db6877adf35031ea1e596cb2a0411 306 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 147 302 3.2E-36 T 14-10-2018 IPR000160 GGDEF domain RY45_06470 ef4db6877adf35031ea1e596cb2a0411 306 Pfam PF00990 Diguanylate cyclase, GGDEF domain 152 301 1.1E-39 T 14-10-2018 IPR000160 GGDEF domain RY45_06470 ef4db6877adf35031ea1e596cb2a0411 306 SUPERFAMILY SSF55073 155 302 1.96E-39 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_06470 ef4db6877adf35031ea1e596cb2a0411 306 Gene3D G3DSA:3.30.70.270 142 305 4.6E-44 T 14-10-2018 RY45_06470 ef4db6877adf35031ea1e596cb2a0411 306 SMART SM00267 139 306 3.0E-43 T 14-10-2018 IPR000160 GGDEF domain RY45_11965 3d613871a270a76fdeabbb90d1feaca5 438 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 33 431 1.1E-189 T 14-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 RY45_11965 3d613871a270a76fdeabbb90d1feaca5 438 SUPERFAMILY SSF51556 75 378 1.95E-103 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_11965 3d613871a270a76fdeabbb90d1feaca5 438 SUPERFAMILY SSF51338 32 90 6.91E-10 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_11965 3d613871a270a76fdeabbb90d1feaca5 438 SUPERFAMILY SSF51338 358 434 9.5E-5 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_11965 3d613871a270a76fdeabbb90d1feaca5 438 Gene3D G3DSA:3.20.20.140 76 393 2.5E-195 T 14-10-2018 RY45_11965 3d613871a270a76fdeabbb90d1feaca5 438 Pfam PF01979 Amidohydrolase family 72 434 2.2E-80 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_11965 3d613871a270a76fdeabbb90d1feaca5 438 Gene3D G3DSA:2.30.40.10 10 429 2.5E-195 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 PRINTS PR00481 Cytosol aminopeptidase signature 266 286 1.5E-46 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 PRINTS PR00481 Cytosol aminopeptidase signature 294 309 1.5E-46 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 PRINTS PR00481 Cytosol aminopeptidase signature 207 228 1.5E-46 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 PRINTS PR00481 Cytosol aminopeptidase signature 244 265 1.5E-46 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 PRINTS PR00481 Cytosol aminopeptidase signature 185 202 1.5E-46 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 Pfam PF12404 Peptidase 1 76 1.4E-26 T 14-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 104 418 5.0E-91 T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 Gene3D G3DSA:3.40.630.10 91 426 2.6E-95 T 14-10-2018 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 PIRSF PIRSF036388 1 427 2.0E-182 T 14-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 SUPERFAMILY SSF53187 103 423 4.71E-90 T 14-10-2018 RY45_09565 fba1028d09eae3b9ed03403d61913f49 427 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 270 277 - T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 343 3.5E-140 T 14-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 Gene3D G3DSA:3.40.1690.10 211 350 6.2E-54 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 SUPERFAMILY SSF160544 238 345 4.84E-32 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 Pfam PF01312 FlhB HrpN YscU SpaS Family 3 340 2.1E-113 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 1.2E-45 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 266 281 1.2E-45 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 202 220 1.2E-45 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 296 317 1.2E-45 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_14030 be0afcfee4e10cb3cd469846a4d96301 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 222 239 1.2E-45 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 Gene3D G3DSA:2.40.30.10 189 340 5.2E-127 T 14-10-2018 RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 393 6.0E-127 T 14-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 SUPERFAMILY SSF51905 1 394 1.09E-58 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 363 370 2.2E-8 T 14-10-2018 RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 165 2.2E-8 T 14-10-2018 RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.2E-8 T 14-10-2018 RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 Gene3D G3DSA:3.50.50.60 8 389 5.2E-127 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 SUPERFAMILY SSF160996 191 339 1.83E-39 T 14-10-2018 RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 Pfam PF03486 HI0933-like protein 5 393 1.4E-151 T 14-10-2018 RY45_00265 0cfc48584424ee22be3ce0c1887f0b12 395 Gene3D G3DSA:1.10.8.260 263 323 5.2E-127 T 14-10-2018 IPR023166 HI0933-like insert domain superfamily RY45_14660 6504f35dfda9e3563143ce9c9339d7cd 81 SUPERFAMILY SSF54285 1 81 7.03E-25 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RY45_14660 6504f35dfda9e3563143ce9c9339d7cd 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 1.5E-22 T 14-10-2018 RY45_14660 6504f35dfda9e3563143ce9c9339d7cd 81 Gene3D G3DSA:3.10.20.30 1 81 1.0E-27 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_14660 6504f35dfda9e3563143ce9c9339d7cd 81 Pfam PF02597 ThiS family 4 81 3.9E-22 T 14-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RY45_13010 ca303e74011c96cef33b0142923dd3ee 137 Pfam PF07450 Formate hydrogenlyase maturation protein HycH 4 135 9.9E-53 T 14-10-2018 IPR010005 Formate hydrogenlyase maturation HycH RY45_13010 ca303e74011c96cef33b0142923dd3ee 137 ProDom PD021295 MATURATION HYDROGENLYASE FORMATE HYCH LYASE HYCE PROCESSING OXIDOREDUCTASE J COMPONENT 1 135 9.0E-32 T 14-10-2018 IPR010005 Formate hydrogenlyase maturation HycH RY45_13205 f7f38b5e35371c5c09fc56a290f4c065 994 SUPERFAMILY SSF48695 552 765 6.96E-21 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_13205 f7f38b5e35371c5c09fc56a290f4c065 994 Gene3D G3DSA:1.10.1130.10 476 801 6.7E-6 T 14-10-2018 RY45_13205 f7f38b5e35371c5c09fc56a290f4c065 994 Gene3D G3DSA:2.130.10.10 31 379 3.0E-22 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RY45_13205 f7f38b5e35371c5c09fc56a290f4c065 994 SUPERFAMILY SSF50974 24 398 1.15E-26 T 14-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 RY45_17675 86f090deac0b3db4cc5109405282c288 254 PIRSF PIRSF028069 2 254 3.0E-87 T 14-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 RY45_17675 86f090deac0b3db4cc5109405282c288 254 Pfam PF11932 Protein of unknown function (DUF3450) 10 248 4.4E-90 T 14-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 RY45_10460 e30d69e20421835f1f946261c799148e 299 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 72 114 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_10460 e30d69e20421835f1f946261c799148e 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 102 2.1E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_10460 e30d69e20421835f1f946261c799148e 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 102 118 2.1E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_10460 e30d69e20421835f1f946261c799148e 299 SMART SM00871 144 297 5.8E-17 T 14-10-2018 IPR010499 Bacterial transcription activator, effector binding RY45_10460 e30d69e20421835f1f946261c799148e 299 Gene3D G3DSA:1.10.10.60 73 125 4.6E-14 T 14-10-2018 RY45_10460 e30d69e20421835f1f946261c799148e 299 SUPERFAMILY SSF55136 209 296 8.11E-22 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RY45_10460 e30d69e20421835f1f946261c799148e 299 SUPERFAMILY SSF46689 19 69 4.48E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10460 e30d69e20421835f1f946261c799148e 299 SMART SM00342 35 118 3.4E-27 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_10460 e30d69e20421835f1f946261c799148e 299 Gene3D G3DSA:3.20.80.10 144 297 2.4E-25 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RY45_10460 e30d69e20421835f1f946261c799148e 299 Pfam PF06445 GyrI-like small molecule binding domain 146 296 1.1E-14 T 14-10-2018 IPR029442 GyrI-like small molecule binding domain RY45_10460 e30d69e20421835f1f946261c799148e 299 Pfam PF12833 Helix-turn-helix domain 41 120 1.5E-20 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_10460 e30d69e20421835f1f946261c799148e 299 SUPERFAMILY SSF46689 72 122 1.61E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10460 e30d69e20421835f1f946261c799148e 299 Gene3D G3DSA:1.10.10.60 11 72 2.7E-18 T 14-10-2018 RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 ProSitePatterns PS01053 Arginase family signature. 243 264 - T 14-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 PRINTS PR00116 Arginase signature 123 138 1.3E-5 T 14-10-2018 IPR006035 Ureohydrolase GO:0046872 RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 PRINTS PR00116 Arginase signature 240 269 1.3E-5 T 14-10-2018 IPR006035 Ureohydrolase GO:0046872 RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 PRINTS PR00116 Arginase signature 275 289 1.3E-5 T 14-10-2018 IPR006035 Ureohydrolase GO:0046872 RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 Gene3D G3DSA:3.40.800.10 4 314 4.1E-112 T 14-10-2018 RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 Pfam PF00491 Arginase family 44 312 4.8E-60 T 14-10-2018 IPR006035 Ureohydrolase GO:0046872 RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 SUPERFAMILY SSF52768 11 312 5.58E-79 T 14-10-2018 IPR023696 Ureohydrolase domain superfamily RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 TIGRFAM TIGR01227 hutG: formimidoylglutamase 12 313 5.8E-98 T 14-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 RY45_02175 13b64aeabb10cb94b4dd9b095c312b61 314 Hamap MF_00737 Formimidoylglutamase [hutG]. 7 314 42.994 T 14-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 RY45_05210 ca16de1b994b94258cbb5f1febbf213d 275 SMART SM00650 30 203 4.6E-83 T 14-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RY45_05210 ca16de1b994b94258cbb5f1febbf213d 275 Gene3D G3DSA:1.10.8.100 206 270 2.7E-22 T 14-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 RY45_05210 ca16de1b994b94258cbb5f1febbf213d 275 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 14 270 55.131 T 14-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RY45_05210 ca16de1b994b94258cbb5f1febbf213d 275 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 15 269 5.3E-86 T 14-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RY45_05210 ca16de1b994b94258cbb5f1febbf213d 275 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 46 73 - T 14-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RY45_05210 ca16de1b994b94258cbb5f1febbf213d 275 Pfam PF00398 Ribosomal RNA adenine dimethylase 14 270 1.2E-74 T 14-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RY45_05210 ca16de1b994b94258cbb5f1febbf213d 275 SUPERFAMILY SSF53335 22 271 4.71E-76 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_05210 ca16de1b994b94258cbb5f1febbf213d 275 Gene3D G3DSA:3.40.50.150 6 204 1.0E-64 T 14-10-2018 RY45_14250 c836ee5a1d2091039958d55fb4696242 192 Gene3D G3DSA:3.40.50.150 3 191 1.4E-44 T 14-10-2018 RY45_14250 c836ee5a1d2091039958d55fb4696242 192 Pfam PF01596 O-methyltransferase 16 158 3.7E-21 T 14-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 RY45_14250 c836ee5a1d2091039958d55fb4696242 192 SUPERFAMILY SSF53335 21 191 1.69E-32 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_03685 79e471c3b25d0d4589b7fde3dcc20b08 138 Gene3D G3DSA:3.30.160.20 1 135 3.9E-33 T 14-10-2018 RY45_03685 79e471c3b25d0d4589b7fde3dcc20b08 138 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RY45_03685 79e471c3b25d0d4589b7fde3dcc20b08 138 SUPERFAMILY SSF75620 8 113 4.71E-15 T 14-10-2018 RY45_03685 79e471c3b25d0d4589b7fde3dcc20b08 138 Pfam PF00472 RF-1 domain 8 132 2.2E-24 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 Pfam PF12161 HsdM N-terminal domain 6 108 1.1E-8 T 14-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 Gene3D G3DSA:1.20.1260.30 1 149 3.6E-47 T 14-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 Pfam PF02384 N-6 DNA Methylase 123 408 1.6E-85 T 14-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 262 268 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 Gene3D G3DSA:3.40.50.150 150 465 3.9E-85 T 14-10-2018 RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 SUPERFAMILY SSF53335 5 501 4.98E-129 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 286 310 2.0E-19 T 14-10-2018 RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 147 163 2.0E-19 T 14-10-2018 RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 259 271 2.0E-19 T 14-10-2018 RY45_07610 d94fdb957be2535d96ddf3c9b3cbcea5 504 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 171 185 2.0E-19 T 14-10-2018 RY45_05955 b1cf8212830ace4e00f92e20dd04588c 542 PIRSF PIRSF029745 2 542 3.3E-127 T 14-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 RY45_05955 b1cf8212830ace4e00f92e20dd04588c 542 Gene3D G3DSA:2.40.160.50 168 542 3.3E-77 T 14-10-2018 RY45_05955 b1cf8212830ace4e00f92e20dd04588c 542 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 195 504 1.1E-84 T 14-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal RY45_05955 b1cf8212830ace4e00f92e20dd04588c 542 Gene3D G3DSA:3.10.20.310 49 137 2.5E-14 T 14-10-2018 RY45_05955 b1cf8212830ace4e00f92e20dd04588c 542 Pfam PF08479 POTRA domain, ShlB-type 62 137 3.6E-22 T 14-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type RY45_05955 b1cf8212830ace4e00f92e20dd04588c 542 Pfam PF17287 POTRA domain 138 190 5.4E-16 T 14-10-2018 IPR035251 ShlB, POTRA domain RY45_04285 c064b6b021f15496d86bd44ed4b7f792 166 Pfam PF00293 NUDIX domain 33 149 3.7E-18 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_04285 c064b6b021f15496d86bd44ed4b7f792 166 PRINTS PR00502 NUDIX hydrolase family signature 73 88 2.8E-7 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_04285 c064b6b021f15496d86bd44ed4b7f792 166 PRINTS PR00502 NUDIX hydrolase family signature 59 73 2.8E-7 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_04285 c064b6b021f15496d86bd44ed4b7f792 166 ProSitePatterns PS00893 Nudix box signature. 64 85 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_04285 c064b6b021f15496d86bd44ed4b7f792 166 Gene3D G3DSA:3.90.79.10 25 156 5.2E-27 T 14-10-2018 RY45_04285 c064b6b021f15496d86bd44ed4b7f792 166 SUPERFAMILY SSF55811 2 163 3.11E-31 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 Gene3D G3DSA:1.20.210.10 52 552 5.5E-190 T 14-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 1.3E-95 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 SUPERFAMILY SSF81442 43 558 2.09E-179 T 14-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 14-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 14-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15210 f376f38a4c63cfd013d03b411450c4e3 658 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 502 8.0E-135 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_10260 48df6fea97aad6fc80f5dd0138fd5cba 264 Pfam PF11150 Protein of unknown function (DUF2927) 34 234 7.7E-63 T 14-10-2018 IPR021323 Protein of unknown function DUF2927 RY45_04735 55daf1fd4d226bf42aeba1f9c86f776a 387 SUPERFAMILY SSF103473 3 368 1.44E-58 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_04735 55daf1fd4d226bf42aeba1f9c86f776a 387 ProSitePatterns PS00216 Sugar transport proteins signature 1. 57 73 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RY45_04735 55daf1fd4d226bf42aeba1f9c86f776a 387 Pfam PF07690 Major Facilitator Superfamily 8 344 5.4E-45 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_04735 55daf1fd4d226bf42aeba1f9c86f776a 387 Gene3D G3DSA:1.20.1720.10 3 379 4.3E-92 T 14-10-2018 RY45_04735 55daf1fd4d226bf42aeba1f9c86f776a 387 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 3 350 1.6E-75 T 14-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 RY45_12225 6357ae61019d772089a41edb92cc5e58 195 SUPERFAMILY SSF52218 1 193 1.27E-51 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_12225 6357ae61019d772089a41edb92cc5e58 195 Pfam PF02525 Flavodoxin-like fold 3 192 6.2E-40 T 14-10-2018 IPR003680 Flavodoxin-like fold RY45_12225 6357ae61019d772089a41edb92cc5e58 195 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 194 29.74 T 14-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 RY45_12225 6357ae61019d772089a41edb92cc5e58 195 Gene3D G3DSA:3.40.50.360 1 194 9.3E-52 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_21260 8a009d18a690f1ee29a164d024f17b27 466 Pfam PF00375 Sodium:dicarboxylate symporter family 30 441 2.9E-92 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RY45_21260 8a009d18a690f1ee29a164d024f17b27 466 Gene3D G3DSA:1.10.3860.10 19 458 1.3E-92 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_21260 8a009d18a690f1ee29a164d024f17b27 466 SUPERFAMILY SSF118215 29 441 6.93E-84 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_21260 8a009d18a690f1ee29a164d024f17b27 466 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 8.2E-19 T 14-10-2018 RY45_21260 8a009d18a690f1ee29a164d024f17b27 466 PRINTS PR00173 Glutamate-aspartate symporter signature 396 416 8.2E-19 T 14-10-2018 RY45_21260 8a009d18a690f1ee29a164d024f17b27 466 PRINTS PR00173 Glutamate-aspartate symporter signature 369 388 8.2E-19 T 14-10-2018 RY45_21260 8a009d18a690f1ee29a164d024f17b27 466 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 8.2E-19 T 14-10-2018 RY45_21260 8a009d18a690f1ee29a164d024f17b27 466 PRINTS PR00173 Glutamate-aspartate symporter signature 181 203 8.2E-19 T 14-10-2018 RY45_04570 0152a442f8db3e507ba8d3ce241cfef9 306 Gene3D G3DSA:3.40.80.10 48 218 1.3E-45 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RY45_04570 0152a442f8db3e507ba8d3ce241cfef9 306 SMART SM00644 55 206 9.1E-24 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RY45_04570 0152a442f8db3e507ba8d3ce241cfef9 306 Gene3D G3DSA:1.10.101.10 222 303 3.4E-23 T 14-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RY45_04570 0152a442f8db3e507ba8d3ce241cfef9 306 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 65 207 6.3E-29 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RY45_04570 0152a442f8db3e507ba8d3ce241cfef9 306 SUPERFAMILY SSF47090 226 303 2.94E-19 T 14-10-2018 IPR036365 PGBD-like superfamily RY45_04570 0152a442f8db3e507ba8d3ce241cfef9 306 SUPERFAMILY SSF55846 51 215 3.8E-44 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RY45_04570 0152a442f8db3e507ba8d3ce241cfef9 306 Pfam PF01471 Putative peptidoglycan binding domain 246 293 1.8E-7 T 14-10-2018 IPR002477 Peptidoglycan binding-like RY45_07210 1a38b52010ff70e525a087bdaca94cba 443 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 349 358 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_07210 1a38b52010ff70e525a087bdaca94cba 443 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 22 436 1.6E-180 T 14-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_07210 1a38b52010ff70e525a087bdaca94cba 443 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 25 435 6.4E-201 T 14-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_07210 1a38b52010ff70e525a087bdaca94cba 443 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 358 7.0E-75 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RY45_07210 1a38b52010ff70e525a087bdaca94cba 443 Gene3D G3DSA:3.40.50.12240 18 440 1.8E-156 T 14-10-2018 RY45_07210 1a38b52010ff70e525a087bdaca94cba 443 SMART SM00382 159 342 2.0E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_07210 1a38b52010ff70e525a087bdaca94cba 443 SUPERFAMILY SSF52540 93 364 2.47E-96 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02480 c217651965c49474473b8c6944bd8060 222 SMART SM00448 1 112 7.2E-42 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_02480 c217651965c49474473b8c6944bd8060 222 SUPERFAMILY SSF52172 1 116 9.39E-39 T 14-10-2018 IPR011006 CheY-like superfamily RY45_02480 c217651965c49474473b8c6944bd8060 222 SMART SM00862 145 219 3.2E-18 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_02480 c217651965c49474473b8c6944bd8060 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 219 3.6E-17 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_02480 c217651965c49474473b8c6944bd8060 222 Gene3D G3DSA:1.10.10.10 126 222 4.3E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_02480 c217651965c49474473b8c6944bd8060 222 Pfam PF00072 Response regulator receiver domain 3 112 4.1E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_02480 c217651965c49474473b8c6944bd8060 222 SUPERFAMILY SSF46894 121 220 1.19E-21 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_02480 c217651965c49474473b8c6944bd8060 222 Gene3D G3DSA:3.40.50.2300 1 123 9.9E-37 T 14-10-2018 RY45_15715 13969027384200737d81fbcfb294eca7 1250 Gene3D G3DSA:3.40.50.300 1 276 8.7E-36 T 14-10-2018 RY45_15715 13969027384200737d81fbcfb294eca7 1250 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1152 1208 3.1E-11 T 14-10-2018 RY45_15715 13969027384200737d81fbcfb294eca7 1250 SUPERFAMILY SSF52540 453 1245 1.62E-8 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15715 13969027384200737d81fbcfb294eca7 1250 Gene3D G3DSA:3.40.50.300 1026 1249 9.0E-24 T 14-10-2018 RY45_15715 13969027384200737d81fbcfb294eca7 1250 SUPERFAMILY SSF52540 13 1230 7.19E-24 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15715 13969027384200737d81fbcfb294eca7 1250 Pfam PF13476 AAA domain 5 225 1.0E-25 T 14-10-2018 IPR038729 Rad50/SbcC-type AAA domain RY45_21955 09fc66fbc8b37bd8b3ea8b853e8991e7 221 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 1 183 1.1E-41 T 14-10-2018 IPR002654 Glycosyl transferase, family 25 RY45_07370 117dfbfc5f96784c76ae7d0435944c52 159 Pfam PF03918 Cytochrome C biogenesis protein 13 153 2.6E-56 T 14-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family RY45_07370 117dfbfc5f96784c76ae7d0435944c52 159 Gene3D G3DSA:1.10.8.640 22 106 5.1E-37 T 14-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily RY45_19450 18161ead5d4cf63a380ac97e8019a483 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 38 114 6.1E-8 T 14-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 RY45_19450 18161ead5d4cf63a380ac97e8019a483 133 SUPERFAMILY SSF51316 7 131 6.7E-32 T 14-10-2018 IPR011057 Mss4-like superfamily RY45_19450 18161ead5d4cf63a380ac97e8019a483 133 Gene3D G3DSA:2.170.150.70 14 131 3.4E-37 T 14-10-2018 RY45_18530 0f734829b321fd6d323e01584e63acae 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 3.5E-8 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_18530 0f734829b321fd6d323e01584e63acae 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 3.5E-8 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_18530 0f734829b321fd6d323e01584e63acae 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 3.5E-8 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_18530 0f734829b321fd6d323e01584e63acae 141 SUPERFAMILY SSF46785 4 139 1.18E-33 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_18530 0f734829b321fd6d323e01584e63acae 141 Pfam PF01047 MarR family 32 89 1.3E-14 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_18530 0f734829b321fd6d323e01584e63acae 141 SMART SM00347 25 130 1.5E-18 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_18530 0f734829b321fd6d323e01584e63acae 141 Gene3D G3DSA:1.10.10.10 1 140 1.5E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 Gene3D G3DSA:2.60.40.1180 578 674 9.1E-18 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 Gene3D G3DSA:3.20.20.80 126 570 1.6E-169 T 14-10-2018 RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 SMART SM00642 147 557 1.8E-8 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 SUPERFAMILY SSF81296 7 133 1.04E-38 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 Pfam PF00128 Alpha amylase, catalytic domain 177 516 2.3E-11 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 Gene3D G3DSA:2.60.40.10 2 125 2.8E-35 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 654 1.1E-257 T 14-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 11 96 7.4E-13 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 SUPERFAMILY SSF51011 581 674 7.43E-19 T 14-10-2018 RY45_18560 7ac6c90b7c02d137e78e25b01d474f34 713 SUPERFAMILY SSF51445 122 563 2.2E-124 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_00340 df9c3991427807f22ed56c4df7c1b982 169 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 7 160 30.018 T 14-10-2018 IPR033747 Class I PurE RY45_00340 df9c3991427807f22ed56c4df7c1b982 169 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 7 161 7.2E-59 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RY45_00340 df9c3991427807f22ed56c4df7c1b982 169 SUPERFAMILY SSF52255 4 160 2.09E-61 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RY45_00340 df9c3991427807f22ed56c4df7c1b982 169 Pfam PF00731 AIR carboxylase 7 156 7.0E-60 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RY45_00340 df9c3991427807f22ed56c4df7c1b982 169 Gene3D G3DSA:3.40.50.7700 1 168 1.1E-68 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RY45_00340 df9c3991427807f22ed56c4df7c1b982 169 SMART SM01001 5 160 2.7E-95 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RY45_00340 df9c3991427807f22ed56c4df7c1b982 169 PIRSF PIRSF001338 2 166 1.3E-60 T 14-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 RY45_05730 968271daf7726c6d5634bb4c50507fc0 133 Gene3D G3DSA:3.10.180.10 9 126 1.3E-7 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_05730 968271daf7726c6d5634bb4c50507fc0 133 SUPERFAMILY SSF54593 11 127 1.83E-9 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_18190 4707bb842f811a24bb4947be40153c73 147 SMART SM00450 26 143 1.2E-8 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_18190 4707bb842f811a24bb4947be40153c73 147 Gene3D G3DSA:3.40.250.10 27 147 1.7E-18 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_18190 4707bb842f811a24bb4947be40153c73 147 Pfam PF00581 Rhodanese-like domain 33 139 8.3E-14 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_18190 4707bb842f811a24bb4947be40153c73 147 SUPERFAMILY SSF52821 32 146 7.07E-20 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_12335 85f8bbf5b842b41b445c9adf983965d0 329 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 10 127 2.7E-24 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RY45_12335 85f8bbf5b842b41b445c9adf983965d0 329 Gene3D G3DSA:3.30.360.10 129 327 1.3E-21 T 14-10-2018 RY45_12335 85f8bbf5b842b41b445c9adf983965d0 329 SUPERFAMILY SSF55347 138 299 5.89E-11 T 14-10-2018 RY45_12335 85f8bbf5b842b41b445c9adf983965d0 329 SUPERFAMILY SSF51735 5 143 1.08E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_12335 85f8bbf5b842b41b445c9adf983965d0 329 Gene3D G3DSA:3.40.50.720 6 128 2.5E-31 T 14-10-2018 RY45_07240 c5052e7dbbed3351e624b846fd174869 127 Pfam PF04347 Flagellar biosynthesis protein, FliO 47 121 8.3E-19 T 14-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 RY45_07240 c5052e7dbbed3351e624b846fd174869 127 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 35 101 8.6E-21 T 14-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 RY45_05560 e03cef7ce55721d106676c888d3f0f0e 464 Pfam PF03796 DnaB-like helicase C terminal domain 198 454 3.2E-111 T 14-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RY45_05560 e03cef7ce55721d106676c888d3f0f0e 464 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 19 456 2.7E-176 T 14-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RY45_05560 e03cef7ce55721d106676c888d3f0f0e 464 Gene3D G3DSA:1.10.860.10 11 175 8.8E-57 T 14-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RY45_05560 e03cef7ce55721d106676c888d3f0f0e 464 Pfam PF00772 DnaB-like helicase N terminal domain 19 120 3.9E-37 T 14-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RY45_05560 e03cef7ce55721d106676c888d3f0f0e 464 SMART SM00382 215 421 0.0025 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_05560 e03cef7ce55721d106676c888d3f0f0e 464 Gene3D G3DSA:3.40.50.300 176 457 7.2E-104 T 14-10-2018 RY45_05560 e03cef7ce55721d106676c888d3f0f0e 464 SUPERFAMILY SSF48024 17 128 2.48E-39 T 14-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RY45_05560 e03cef7ce55721d106676c888d3f0f0e 464 SUPERFAMILY SSF52540 196 447 3.07E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06010 4c9d00f996e6e359de6ee49edb687f17 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 5.5E-63 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp RY45_06010 4c9d00f996e6e359de6ee49edb687f17 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 1.1E-30 T 14-10-2018 IPR008514 Type VI secretion system effector, Hcp RY45_06010 4c9d00f996e6e359de6ee49edb687f17 172 SUPERFAMILY SSF141452 3 168 6.15E-38 T 14-10-2018 IPR036624 Hcp1-like superfamily RY45_06010 4c9d00f996e6e359de6ee49edb687f17 172 Gene3D G3DSA:2.30.110.20 2 172 5.1E-67 T 14-10-2018 IPR036624 Hcp1-like superfamily RY45_03915 d32f443a3ef787fc1ef10963ba1f737b 133 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 25 6.4E-9 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03915 d32f443a3ef787fc1ef10963ba1f737b 133 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 25 1.1E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03915 d32f443a3ef787fc1ef10963ba1f737b 133 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 26 113 1.3E-21 T 14-10-2018 IPR031982 Type IV minor pilin ComP RY45_03915 d32f443a3ef787fc1ef10963ba1f737b 133 Gene3D G3DSA:3.30.700.10 5 132 6.2E-20 T 14-10-2018 RY45_03915 d32f443a3ef787fc1ef10963ba1f737b 133 SUPERFAMILY SSF54523 5 122 1.73E-21 T 14-10-2018 RY45_14865 74c3d6a7c9f1a010266943fa79633e84 301 SUPERFAMILY SSF103481 210 299 3.4E-11 T 14-10-2018 RY45_14865 74c3d6a7c9f1a010266943fa79633e84 301 Pfam PF00892 EamA-like transporter family 157 296 8.4E-12 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_14865 74c3d6a7c9f1a010266943fa79633e84 301 Pfam PF00892 EamA-like transporter family 4 135 4.0E-14 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_14865 74c3d6a7c9f1a010266943fa79633e84 301 SUPERFAMILY SSF103481 36 140 7.85E-11 T 14-10-2018 RY45_17305 251e689ba2645d8973e0c9cc8d05df3b 182 Gene3D G3DSA:3.40.109.10 1 180 5.9E-40 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RY45_17305 251e689ba2645d8973e0c9cc8d05df3b 182 SUPERFAMILY SSF55469 1 181 4.84E-40 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RY45_17305 251e689ba2645d8973e0c9cc8d05df3b 182 Pfam PF00881 Nitroreductase family 8 161 1.4E-24 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RY45_17305 251e689ba2645d8973e0c9cc8d05df3b 182 PIRSF PIRSF000232 1 182 6.6E-62 T 14-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like RY45_08895 7b9e919f9c1146391dc71309523ce87a 195 Gene3D G3DSA:3.40.50.1240 1 187 1.2E-41 T 14-10-2018 IPR029033 Histidine phosphatase superfamily RY45_08895 7b9e919f9c1146391dc71309523ce87a 195 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 14-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RY45_08895 7b9e919f9c1146391dc71309523ce87a 195 SMART SM00855 4 160 2.1E-22 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_08895 7b9e919f9c1146391dc71309523ce87a 195 PIRSF PIRSF000709 1 187 1.0E-6 T 14-10-2018 RY45_08895 7b9e919f9c1146391dc71309523ce87a 195 SUPERFAMILY SSF53254 1 187 9.03E-44 T 14-10-2018 IPR029033 Histidine phosphatase superfamily RY45_08895 7b9e919f9c1146391dc71309523ce87a 195 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 178 1.3E-36 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_05050 b300e261a14796ca56bd03213d0b89dc 166 SUPERFAMILY SSF82679 1 102 2.75E-27 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RY45_05050 b300e261a14796ca56bd03213d0b89dc 166 Gene3D G3DSA:3.30.70.940 1 165 1.1E-50 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RY45_05050 b300e261a14796ca56bd03213d0b89dc 166 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 165 47.148 T 14-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 RY45_05050 b300e261a14796ca56bd03213d0b89dc 166 SMART SM00738 1 100 9.9E-17 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RY45_05050 b300e261a14796ca56bd03213d0b89dc 166 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 162 2.0E-52 T 14-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 RY45_05050 b300e261a14796ca56bd03213d0b89dc 166 Pfam PF02357 Transcription termination factor nusG 2 95 1.9E-19 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RY45_19720 5b0eb7355229ea52b178c2c820f6d0d6 381 Gene3D G3DSA:3.40.190.10 142 280 6.8E-53 T 14-10-2018 RY45_19720 5b0eb7355229ea52b178c2c820f6d0d6 381 SUPERFAMILY SSF53850 30 355 5.65E-56 T 14-10-2018 RY45_19720 5b0eb7355229ea52b178c2c820f6d0d6 381 Pfam PF13416 Bacterial extracellular solute-binding protein 54 327 3.0E-29 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein RY45_19720 5b0eb7355229ea52b178c2c820f6d0d6 381 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 273 292 1.2E-7 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_19720 5b0eb7355229ea52b178c2c820f6d0d6 381 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 133 149 1.2E-7 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_19720 5b0eb7355229ea52b178c2c820f6d0d6 381 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 59 80 1.2E-7 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_19720 5b0eb7355229ea52b178c2c820f6d0d6 381 Gene3D G3DSA:3.40.190.10 36 325 6.8E-53 T 14-10-2018 RY45_15990 713d431fdf6df1b8c7de927b59480d1d 290 SUPERFAMILY SSF53067 1 112 7.69E-21 T 14-10-2018 RY45_15990 713d431fdf6df1b8c7de927b59480d1d 290 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 6 252 3.0E-31 T 14-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 RY45_15990 713d431fdf6df1b8c7de927b59480d1d 290 SUPERFAMILY SSF53067 114 279 4.05E-39 T 14-10-2018 RY45_15990 713d431fdf6df1b8c7de927b59480d1d 290 Gene3D G3DSA:3.30.420.40 4 114 6.0E-65 T 14-10-2018 RY45_15990 713d431fdf6df1b8c7de927b59480d1d 290 Gene3D G3DSA:3.30.420.40 115 261 6.0E-65 T 14-10-2018 RY45_21415 e1dbc70259017392bb0312a2f01f9247 336 Gene3D G3DSA:3.20.20.100 17 333 3.9E-113 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RY45_21415 e1dbc70259017392bb0312a2f01f9247 336 Pfam PF00248 Aldo/keto reductase family 30 327 4.5E-65 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain RY45_21415 e1dbc70259017392bb0312a2f01f9247 336 SUPERFAMILY SSF51430 17 329 2.23E-87 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RY45_02320 82ec29a67c0c948e444e72dae98a92c6 1299 Pfam PF13116 Protein of unknown function 496 781 8.4E-84 T 14-10-2018 IPR025263 Domain of unknown function DUF3971 RY45_02320 82ec29a67c0c948e444e72dae98a92c6 1299 Pfam PF13502 AsmA-like C-terminal region 1009 1251 3.5E-59 T 14-10-2018 IPR032712 AsmA-like, C-terminal RY45_02320 82ec29a67c0c948e444e72dae98a92c6 1299 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 10 1254 3.6E-254 T 14-10-2018 IPR011836 Conserved hypothetical protein CHP02099 RY45_22175 dd45b7c9da8fcae8b805900f1e124719 208 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 201 27.453 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RY45_22175 dd45b7c9da8fcae8b805900f1e124719 208 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 203 3.8E-57 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RY45_22175 dd45b7c9da8fcae8b805900f1e124719 208 SUPERFAMILY SSF53335 3 205 4.26E-39 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_22175 dd45b7c9da8fcae8b805900f1e124719 208 Gene3D G3DSA:3.40.50.150 1 205 2.3E-64 T 14-10-2018 RY45_22175 dd45b7c9da8fcae8b805900f1e124719 208 PIRSF PIRSF003078 1 207 5.5E-59 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RY45_22175 dd45b7c9da8fcae8b805900f1e124719 208 Pfam PF02527 rRNA small subunit methyltransferase G 20 199 5.0E-62 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RY45_16730 5d2cfbfd46f26b6472e50de93e9c14f8 514 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 62 455 1.2E-93 T 14-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 RY45_16730 5d2cfbfd46f26b6472e50de93e9c14f8 514 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 9 493 23.995 T 14-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 RY45_16730 5d2cfbfd46f26b6472e50de93e9c14f8 514 SUPERFAMILY SSF56317 217 488 7.06E-41 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RY45_16730 5d2cfbfd46f26b6472e50de93e9c14f8 514 Gene3D G3DSA:3.60.110.10 207 483 1.7E-14 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RY45_16730 5d2cfbfd46f26b6472e50de93e9c14f8 514 Pfam PF00795 Carbon-nitrogen hydrolase 220 473 1.7E-33 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RY45_07835 4c58a9825651c2445542f42070a457e6 68 Pfam PF10746 Phage holin T7 family, holin superfamily II 14 61 2.6E-11 T 14-10-2018 IPR019682 Bacteriophage T7, Gp17.5, holin GO:0019076|GO:0019835 RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 Gene3D G3DSA:3.40.50.970 471 705 1.7E-109 T 14-10-2018 RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 Gene3D G3DSA:3.40.50.920 706 886 1.4E-69 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 PIRSF PIRSF000156 1 886 0.0 T 14-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 885 0.0 T 14-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 SUPERFAMILY SSF52518 473 700 6.12E-99 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 SUPERFAMILY SSF52922 701 885 1.95E-58 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 132 296 2.8E-6 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 SUPERFAMILY SSF52518 58 466 2.18E-140 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_20005 4e154d8f13cc4f333d0d74feb9ba55c6 886 Gene3D G3DSA:3.40.50.970 56 470 1.1E-132 T 14-10-2018 RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.4E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 SUPERFAMILY SSF46785 3 82 3.55E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.6E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.6E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.6E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 Gene3D G3DSA:3.40.190.10 161 253 1.9E-11 T 14-10-2018 RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 Gene3D G3DSA:1.10.10.10 2 87 3.2E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 SUPERFAMILY SSF53850 91 282 3.08E-21 T 14-10-2018 RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 Pfam PF03466 LysR substrate binding domain 91 279 9.4E-21 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_10880 cdfcc8ee1a51c292a60a85aab37bafd5 284 Gene3D G3DSA:3.40.190.10 91 266 1.9E-11 T 14-10-2018 RY45_11485 558123cf28482698782d688c01b604bb 656 SUPERFAMILY SSF51735 375 596 1.51E-60 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_11485 558123cf28482698782d688c01b604bb 656 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 379 565 1.2E-4 T 14-10-2018 RY45_11485 558123cf28482698782d688c01b604bb 656 Pfam PF07993 Male sterility protein 5 235 1.4E-41 T 14-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 RY45_11485 558123cf28482698782d688c01b604bb 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 529 548 5.9E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 503 519 5.9E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 380 397 5.9E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 550 567 5.9E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 454 465 5.9E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 509 517 2.8E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 454 465 2.8E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 529 548 2.8E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 Gene3D G3DSA:3.40.50.720 2 363 4.6E-60 T 14-10-2018 RY45_11485 558123cf28482698782d688c01b604bb 656 Gene3D G3DSA:3.40.50.720 365 629 3.2E-62 T 14-10-2018 RY45_11485 558123cf28482698782d688c01b604bb 656 Pfam PF00106 short chain dehydrogenase 379 569 1.3E-49 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_11485 558123cf28482698782d688c01b604bb 656 SUPERFAMILY SSF51735 3 358 1.4E-37 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_11485 558123cf28482698782d688c01b604bb 656 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 516 544 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_02630 ef22d9d7a4443d7cd764b41320432263 291 Pfam PF04392 ABC transporter substrate binding protein 32 289 7.8E-28 T 14-10-2018 IPR007487 ABC transporter, substrate-binding protein RY45_02630 ef22d9d7a4443d7cd764b41320432263 291 Gene3D G3DSA:3.40.50.2300 32 283 9.2E-33 T 14-10-2018 RY45_02630 ef22d9d7a4443d7cd764b41320432263 291 Gene3D G3DSA:3.40.50.2300 132 252 9.2E-33 T 14-10-2018 RY45_06360 49f7b207f6a8aad9f60d9197b7d6026c 379 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 4 378 42.481 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 RY45_06360 49f7b207f6a8aad9f60d9197b7d6026c 379 SUPERFAMILY SSF53756 6 377 8.52E-32 T 14-10-2018 RY45_06360 49f7b207f6a8aad9f60d9197b7d6026c 379 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 4 376 3.6E-147 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 RY45_06360 49f7b207f6a8aad9f60d9197b7d6026c 379 Pfam PF02684 Lipid-A-disaccharide synthetase 7 373 1.6E-132 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 RY45_02875 af827a08e00e05461a50a45d7e4e85c6 530 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 131 263 1.5E-5 T 14-10-2018 IPR018712 Domain of unknown function DUF2235 RY45_02875 af827a08e00e05461a50a45d7e4e85c6 530 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 269 353 3.3E-9 T 14-10-2018 IPR018712 Domain of unknown function DUF2235 RY45_02875 af827a08e00e05461a50a45d7e4e85c6 530 Pfam PF05488 PAAR motif 7 78 6.5E-12 T 14-10-2018 IPR008727 PAAR motif RY45_13165 b7eb84c8176249ae2c450f145a6bc0ed 231 SUPERFAMILY SSF56037 51 209 2.2E-23 T 14-10-2018 RY45_13165 b7eb84c8176249ae2c450f145a6bc0ed 231 Pfam PF03483 B3/4 domain 63 192 4.2E-14 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RY45_13165 b7eb84c8176249ae2c450f145a6bc0ed 231 SMART SM00873 61 217 3.0E-15 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RY45_19095 73dd7422768312ab629a8ff7f2d6f9d8 200 Pfam PF09684 Phage tail protein (Tail_P2_I) 49 176 1.2E-7 T 14-10-2018 IPR006521 Tail protein I RY45_13640 55237c7bc460c980cdb6999a4006be07 397 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 1.7E-112 T 14-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_13640 55237c7bc460c980cdb6999a4006be07 397 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 80 2.6E-38 T 14-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_13640 55237c7bc460c980cdb6999a4006be07 397 Gene3D G3DSA:3.40.50.720 1 396 3.1E-181 T 14-10-2018 RY45_13640 55237c7bc460c980cdb6999a4006be07 397 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 392 56.235 T 14-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_13640 55237c7bc460c980cdb6999a4006be07 397 Pfam PF07055 Enoyl reductase FAD binding domain 323 386 2.2E-30 T 14-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_19995 e543973cf90cb59f1ec610114548169c 475 Gene3D G3DSA:3.50.50.60 9 332 4.2E-123 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_19995 e543973cf90cb59f1ec610114548169c 475 SUPERFAMILY SSF51905 7 381 3.82E-57 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 9.9E-41 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 9.9E-41 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 9.9E-41 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 9.9E-41 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 9.9E-41 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 Gene3D G3DSA:3.50.50.60 150 271 4.2E-123 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_19995 e543973cf90cb59f1ec610114548169c 475 PIRSF PIRSF000350 1 469 6.2E-85 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RY45_19995 e543973cf90cb59f1ec610114548169c 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RY45_19995 e543973cf90cb59f1ec610114548169c 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 1.3E-34 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RY45_19995 e543973cf90cb59f1ec610114548169c 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 460 8.3E-148 T 14-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RY45_19995 e543973cf90cb59f1ec610114548169c 475 Gene3D G3DSA:3.30.390.30 346 467 2.6E-44 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 2.1E-70 T 14-10-2018 RY45_19995 e543973cf90cb59f1ec610114548169c 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 4.2E-63 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_19995 e543973cf90cb59f1ec610114548169c 475 SUPERFAMILY SSF55424 345 461 8.08E-39 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RY45_21275 056631f6806a104613c2c1e1a2f3c191 494 Gene3D G3DSA:3.40.50.1220 318 494 1.5E-86 T 14-10-2018 RY45_21275 056631f6806a104613c2c1e1a2f3c191 494 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 492 3.7E-200 T 14-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 RY45_21275 056631f6806a104613c2c1e1a2f3c191 494 SUPERFAMILY SSF52467 321 494 2.34E-77 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RY45_21275 056631f6806a104613c2c1e1a2f3c191 494 PIRSF PIRSF000204 1 494 6.0E-230 T 14-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RY45_08025 fd8c295bbf11a618eb25f396992f25ab 210 PIRSF PIRSF006324 5 210 1.9E-43 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_08025 fd8c295bbf11a618eb25f396992f25ab 210 Pfam PF01810 LysE type translocator 19 209 1.2E-20 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 Gene3D G3DSA:3.40.190.10 90 285 2.2E-34 T 14-10-2018 RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 Gene3D G3DSA:3.40.190.10 162 267 2.2E-34 T 14-10-2018 RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 Gene3D G3DSA:1.10.10.10 1 86 1.2E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 SUPERFAMILY SSF53850 90 293 1.21E-22 T 14-10-2018 RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 Pfam PF03466 LysR substrate binding domain 89 290 3.5E-23 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 SUPERFAMILY SSF46785 3 86 8.16E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_16685 d0c08f1e2c97c7d6d4779bb2988402b9 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.1E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.419 T 14-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 Pfam PF00366 Ribosomal protein S17 10 76 3.0E-34 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 8.6E-14 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 8.6E-14 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 8.6E-14 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 2.7E-39 T 14-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 SUPERFAMILY SSF50249 5 82 1.33E-33 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 76 3.0E-33 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 Gene3D G3DSA:2.40.50.140 1 82 5.7E-39 T 14-10-2018 RY45_01885 47eb4ce8892defd3f7df4b89f9d1fb84 82 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 14-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_16710 58812c98f959acb02a55a2923fc595ca 477 Pfam PF04055 Radical SAM superfamily 151 325 1.4E-27 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_16710 58812c98f959acb02a55a2923fc595ca 477 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 74.685 T 14-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RY45_16710 58812c98f959acb02a55a2923fc595ca 477 SUPERFAMILY SSF102114 128 374 2.09E-64 T 14-10-2018 RY45_16710 58812c98f959acb02a55a2923fc595ca 477 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RY45_16710 58812c98f959acb02a55a2923fc595ca 477 Gene3D G3DSA:3.40.50.12160 3 135 3.9E-34 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily RY45_16710 58812c98f959acb02a55a2923fc595ca 477 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 439 5.2E-199 T 14-10-2018 RY45_16710 58812c98f959acb02a55a2923fc595ca 477 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 2.5E-30 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 RY45_16710 58812c98f959acb02a55a2923fc595ca 477 Pfam PF01938 TRAM domain 378 440 3.3E-17 T 14-10-2018 IPR002792 TRAM domain RY45_16710 58812c98f959acb02a55a2923fc595ca 477 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 3.7E-154 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 RY45_16710 58812c98f959acb02a55a2923fc595ca 477 Gene3D G3DSA:3.80.30.20 145 377 7.2E-84 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RY45_16710 58812c98f959acb02a55a2923fc595ca 477 SMART SM00729 147 367 1.6E-65 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_02000 ab0960dad420c8b834b601aeb80745b7 128 PIRSF PIRSF005610 1 121 8.5E-27 T 14-10-2018 IPR007360 Invasion gene expression up-regulator, SirB RY45_02000 ab0960dad420c8b834b601aeb80745b7 128 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 122 1.2E-39 T 14-10-2018 IPR007360 Invasion gene expression up-regulator, SirB RY45_16795 302f472b21b3ae76f9b617528916596d 396 Gene3D G3DSA:3.40.710.10 30 285 8.7E-90 T 14-10-2018 RY45_16795 302f472b21b3ae76f9b617528916596d 396 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 286 376 9.2E-25 T 14-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_16795 302f472b21b3ae76f9b617528916596d 396 SMART SM00936 286 376 4.6E-33 T 14-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_16795 302f472b21b3ae76f9b617528916596d 396 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 124 141 1.6E-16 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_16795 302f472b21b3ae76f9b617528916596d 396 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 68 79 1.6E-16 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_16795 302f472b21b3ae76f9b617528916596d 396 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 151 164 1.6E-16 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_16795 302f472b21b3ae76f9b617528916596d 396 SUPERFAMILY SSF56601 3 286 1.75E-81 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_16795 302f472b21b3ae76f9b617528916596d 396 Gene3D G3DSA:2.60.410.10 286 376 6.1E-29 T 14-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_16795 302f472b21b3ae76f9b617528916596d 396 SUPERFAMILY SSF69189 286 378 3.92E-25 T 14-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RY45_16795 302f472b21b3ae76f9b617528916596d 396 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 35 266 2.2E-89 T 14-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RY45_14105 f9635c1fd8425abe3c64ed6d3cf729f2 120 SUPERFAMILY SSF54593 2 119 2.44E-17 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_14105 f9635c1fd8425abe3c64ed6d3cf729f2 120 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 115 1.3E-6 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_14105 f9635c1fd8425abe3c64ed6d3cf729f2 120 Gene3D G3DSA:3.10.180.10 1 120 5.3E-28 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_14670 a627fb7548547420c5c2352f3e35d61b 168 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 11 152 2.0E-31 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_14670 a627fb7548547420c5c2352f3e35d61b 168 SUPERFAMILY SSF53218 5 167 2.62E-41 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_14670 a627fb7548547420c5c2352f3e35d61b 168 Pfam PF00994 Probable molybdopterin binding domain 14 156 7.2E-28 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_14670 a627fb7548547420c5c2352f3e35d61b 168 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 8 168 1.6E-72 T 14-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 RY45_14670 a627fb7548547420c5c2352f3e35d61b 168 Gene3D G3DSA:3.40.980.10 2 168 4.8E-47 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily RY45_14670 a627fb7548547420c5c2352f3e35d61b 168 SMART SM00852 14 158 1.6E-24 T 14-10-2018 IPR001453 MoaB/Mog domain RY45_14670 a627fb7548547420c5c2352f3e35d61b 168 PIRSF PIRSF006443 1 166 6.1E-55 T 14-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 RY45_02590 6689b93eee149aeb2e7c5dacc5d1ae17 174 SUPERFAMILY SSF55729 7 156 8.29E-37 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_02590 6689b93eee149aeb2e7c5dacc5d1ae17 174 Gene3D G3DSA:3.40.630.30 2 166 3.4E-39 T 14-10-2018 RY45_02590 6689b93eee149aeb2e7c5dacc5d1ae17 174 Pfam PF13302 Acetyltransferase (GNAT) domain 14 155 2.2E-29 T 14-10-2018 IPR000182 GNAT domain RY45_19965 c9bcbdf47b96127393a07ecd309d9fb9 522 SMART SM00052 257 503 6.7E-98 T 14-10-2018 IPR001633 EAL domain RY45_19965 c9bcbdf47b96127393a07ecd309d9fb9 522 Gene3D G3DSA:3.20.20.450 258 515 1.1E-82 T 14-10-2018 IPR035919 EAL domain superfamily RY45_19965 c9bcbdf47b96127393a07ecd309d9fb9 522 Pfam PF12792 CSS motif domain associated with EAL 43 231 1.1E-37 T 14-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain RY45_19965 c9bcbdf47b96127393a07ecd309d9fb9 522 SUPERFAMILY SSF141868 264 511 8.89E-76 T 14-10-2018 IPR035919 EAL domain superfamily RY45_19965 c9bcbdf47b96127393a07ecd309d9fb9 522 Pfam PF00563 EAL domain 264 498 6.0E-63 T 14-10-2018 IPR001633 EAL domain RY45_04545 bfd6d1c167f21cf0701d1b12e92edcb7 258 Pfam PF03609 PTS system sorbose-specific iic component 6 236 1.0E-71 T 14-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 RY45_12325 1055bfa9db5a2fb0b8a67e19a798543b 327 Gene3D G3DSA:1.50.10.150 7 313 1.3E-41 T 14-10-2018 IPR038665 Voltage-dependent anion channel superfamily RY45_12325 1055bfa9db5a2fb0b8a67e19a798543b 327 Pfam PF03595 Voltage-dependent anion channel 21 307 4.1E-31 T 14-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 RY45_02865 e3521254344bbc1723883288cfc6366c 202 SUPERFAMILY SSF53098 29 194 5.06E-39 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_02865 e3521254344bbc1723883288cfc6366c 202 Pfam PF00665 Integrase core domain 35 149 1.4E-26 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RY45_02865 e3521254344bbc1723883288cfc6366c 202 Gene3D G3DSA:3.30.420.10 33 181 1.1E-10 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_21420 81d3b323ed31dd08d8825e5658abc746 271 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 269 18.41 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RY45_21420 81d3b323ed31dd08d8825e5658abc746 271 Pfam PF02673 Bacitracin resistance protein BacA 10 263 2.5E-86 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RY45_21420 81d3b323ed31dd08d8825e5658abc746 271 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 262 3.0E-92 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RY45_13630 27b4fa48b14f4d05d9463ea19f777c76 404 SUPERFAMILY SSF53383 5 400 1.63E-97 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_13630 27b4fa48b14f4d05d9463ea19f777c76 404 Pfam PF00155 Aminotransferase class I and II 35 395 6.0E-47 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_13630 27b4fa48b14f4d05d9463ea19f777c76 404 Gene3D G3DSA:3.90.1150.10 22 398 2.2E-142 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_13630 27b4fa48b14f4d05d9463ea19f777c76 404 Gene3D G3DSA:3.40.640.10 53 294 2.2E-142 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 SUPERFAMILY SSF69065 3 158 3.66E-49 T 14-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 222 3.4E-74 T 14-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 Pfam PF00035 Double-stranded RNA binding motif 155 222 1.6E-13 T 14-10-2018 IPR014720 Double-stranded RNA-binding domain RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 SMART SM00535 20 148 1.1E-55 T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 SUPERFAMILY SSF54768 108 222 2.15E-25 T 14-10-2018 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 Gene3D G3DSA:1.10.1520.10 4 142 2.7E-42 T 14-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 29.825 T 14-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 SMART SM00358 155 223 1.1E-20 T 14-10-2018 IPR014720 Double-stranded RNA-binding domain RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 Pfam PF14622 Ribonuclease-III-like 18 139 5.1E-33 T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RY45_04500 ba8782bd6bd4cb935d596dddc75d7dc7 223 Gene3D G3DSA:3.30.160.20 153 223 2.3E-19 T 14-10-2018 RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 334 498 6.1E-30 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 191 5.9E-48 T 14-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 SUPERFAMILY SSF58104 251 508 1.06E-57 T 14-10-2018 RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 SMART SM00283 274 507 1.1E-56 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 Gene3D G3DSA:1.10.287.950 229 509 2.0E-62 T 14-10-2018 RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 6.3E-25 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 6.3E-25 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 6.3E-25 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_13130 11fad38f0360f4937daa8b169f14f8e3 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 6.3E-25 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_11775 2659599d691ef2884083f386ea8ea770 356 SMART SM00421 295 352 1.6E-6 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_11775 2659599d691ef2884083f386ea8ea770 356 Gene3D G3DSA:1.10.10.10 260 355 1.5E-9 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_11775 2659599d691ef2884083f386ea8ea770 356 Pfam PF00196 Bacterial regulatory proteins, luxR family 298 350 8.1E-6 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_11775 2659599d691ef2884083f386ea8ea770 356 SUPERFAMILY SSF46894 286 353 1.33E-11 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_09980 2f0ee6517fd63ab272452df21788f940 105 Gene3D G3DSA:3.30.1390.10 1 105 4.6E-45 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RY45_09980 2f0ee6517fd63ab272452df21788f940 105 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 101 2.8E-34 T 14-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 RY45_09980 2f0ee6517fd63ab272452df21788f940 105 SUPERFAMILY SSF54736 20 104 1.83E-34 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RY45_09980 2f0ee6517fd63ab272452df21788f940 105 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 9 100 29.123 T 14-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RY45_13815 b6b4fdc1bff313bcc33e59bc6c2aae9a 219 Pfam PF00849 RNA pseudouridylate synthase 10 157 9.8E-25 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_13815 b6b4fdc1bff313bcc33e59bc6c2aae9a 219 TIGRFAM TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621 1 214 1.6E-74 T 14-10-2018 IPR006508 Pseudouridine synthase, RluA-like RY45_13815 b6b4fdc1bff313bcc33e59bc6c2aae9a 219 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 51 65 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_13815 b6b4fdc1bff313bcc33e59bc6c2aae9a 219 SUPERFAMILY SSF55120 3 206 1.22E-46 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_13815 b6b4fdc1bff313bcc33e59bc6c2aae9a 219 Gene3D G3DSA:3.30.2350.10 1 200 2.0E-47 T 14-10-2018 RY45_18505 417ff7bb6f1c2e6547e00e81001e5897 413 SUPERFAMILY SSF103473 10 405 3.4E-57 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_18505 417ff7bb6f1c2e6547e00e81001e5897 413 Gene3D G3DSA:1.20.1250.20 5 395 7.3E-57 T 14-10-2018 RY45_18505 417ff7bb6f1c2e6547e00e81001e5897 413 Pfam PF07690 Major Facilitator Superfamily 15 352 1.0E-38 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 361 895 1.6E-149 T 14-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 SUPERFAMILY SSF56003 303 958 9.68E-166 T 14-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 Gene3D G3DSA:3.10.20.30 1 77 3.7E-5 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 Gene3D G3DSA:1.10.150.120 80 154 1.3E-11 T 14-10-2018 RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 PIRSF PIRSF000127 356 949 7.5E-70 T 14-10-2018 IPR016208 Aldehyde oxidase/xanthine dehydrogenase GO:0005506|GO:0016491|GO:0055114 RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 PIRSF PIRSF000127 52 154 0.0052 T 14-10-2018 IPR016208 Aldehyde oxidase/xanthine dehydrogenase GO:0005506|GO:0016491|GO:0055114 RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 PIRSF PIRSF000127 140 346 1.2E-14 T 14-10-2018 IPR016208 Aldehyde oxidase/xanthine dehydrogenase GO:0005506|GO:0016491|GO:0055114 RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 SUPERFAMILY SSF54665 163 318 1.57E-44 T 14-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 SMART SM01008 187 299 5.3E-35 T 14-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 SUPERFAMILY SSF47741 85 189 4.19E-18 T 14-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 TIGRFAM TIGR03313 Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit 5 957 0.0 T 14-10-2018 IPR017699 Molybdenum-binding protein YgfN/XdhD RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 Pfam PF01799 [2Fe-2S] binding domain 74 146 1.1E-11 T 14-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RY45_11975 4e86514e40a49cbbfdc807759e48032a 964 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 188 299 2.9E-27 T 14-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RY45_00355 ece656be14785c286eba5d5593c95399 382 Pfam PF05954 Phage late control gene D protein (GPD) 67 365 2.3E-32 T 14-10-2018 RY45_00355 ece656be14785c286eba5d5593c95399 382 SUPERFAMILY SSF69279 27 200 4.87E-29 T 14-10-2018 RY45_21005 74d8a63de4b78b1da8e6b1271d422032 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.996 T 14-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RY45_21005 74d8a63de4b78b1da8e6b1271d422032 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 14-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_21005 74d8a63de4b78b1da8e6b1271d422032 156 SUPERFAMILY SSF47973 6 149 4.06E-61 T 14-10-2018 IPR036823 Ribosomal protein S7 domain superfamily RY45_21005 74d8a63de4b78b1da8e6b1271d422032 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.6E-70 T 14-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RY45_21005 74d8a63de4b78b1da8e6b1271d422032 156 PIRSF PIRSF002122 3 156 9.8E-62 T 14-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 RY45_21005 74d8a63de4b78b1da8e6b1271d422032 156 Gene3D G3DSA:1.10.455.10 2 155 8.9E-63 T 14-10-2018 IPR036823 Ribosomal protein S7 domain superfamily RY45_21005 74d8a63de4b78b1da8e6b1271d422032 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 6.9E-67 T 14-10-2018 IPR023798 Ribosomal protein S7 domain RY45_17085 71a1e81dd9bd13012bdd40327c7af8c1 209 SUPERFAMILY SSF53335 31 208 1.43E-43 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_17085 71a1e81dd9bd13012bdd40327c7af8c1 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 28.017 T 14-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 RY45_17085 71a1e81dd9bd13012bdd40327c7af8c1 209 Gene3D G3DSA:3.40.50.150 30 208 1.2E-58 T 14-10-2018 RY45_17085 71a1e81dd9bd13012bdd40327c7af8c1 209 Pfam PF01728 FtsJ-like methyltransferase 31 207 2.4E-55 T 14-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RY45_17085 71a1e81dd9bd13012bdd40327c7af8c1 209 PIRSF PIRSF005461 1 209 2.3E-82 T 14-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 RY45_17085 71a1e81dd9bd13012bdd40327c7af8c1 209 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 20 207 3.2E-91 T 14-10-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 RY45_09155 1216a1b4610017d6c663963b7b0b58bd 268 Pfam PF06629 MltA-interacting protein MipA 51 266 7.6E-37 T 14-10-2018 IPR010583 MltA-interacting MipA RY45_09115 7c59f1f5ac29a1d065f47d3c21dfb4c4 75 Gene3D G3DSA:1.10.3390.10 1 75 4.5E-30 T 14-10-2018 IPR023202 YejL-like superfamily RY45_09115 7c59f1f5ac29a1d065f47d3c21dfb4c4 75 PIRSF PIRSF006188 1 71 5.2E-28 T 14-10-2018 IPR009857 Uncharacterised protein family UPF0352 RY45_09115 7c59f1f5ac29a1d065f47d3c21dfb4c4 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 68 5.0E-33 T 14-10-2018 IPR009857 Uncharacterised protein family UPF0352 RY45_09115 7c59f1f5ac29a1d065f47d3c21dfb4c4 75 SUPERFAMILY SSF158651 1 71 4.32E-26 T 14-10-2018 IPR023202 YejL-like superfamily RY45_09115 7c59f1f5ac29a1d065f47d3c21dfb4c4 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 70 20.64 T 14-10-2018 IPR009857 Uncharacterised protein family UPF0352 RY45_09115 7c59f1f5ac29a1d065f47d3c21dfb4c4 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 68 3.4E-20 T 14-10-2018 IPR009857 Uncharacterised protein family UPF0352 RY45_12835 f39ba370dc755814b2354d802bcbf9ac 267 SUPERFAMILY SSF52540 3 228 6.45E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_12835 f39ba370dc755814b2354d802bcbf9ac 267 Gene3D G3DSA:3.40.50.300 2 254 2.8E-71 T 14-10-2018 RY45_12835 f39ba370dc755814b2354d802bcbf9ac 267 Pfam PF00005 ABC transporter 19 167 1.6E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_12835 f39ba370dc755814b2354d802bcbf9ac 267 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_12835 f39ba370dc755814b2354d802bcbf9ac 267 SMART SM00382 27 214 6.8E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17455 1cf68de6f093591402eb49324c13e027 786 SUPERFAMILY SSF82866 600 763 2.62E-21 T 14-10-2018 RY45_17455 1cf68de6f093591402eb49324c13e027 786 Gene3D G3DSA:1.20.1640.10 236 406 5.7E-7 T 14-10-2018 RY45_17455 1cf68de6f093591402eb49324c13e027 786 SUPERFAMILY SSF82866 230 399 3.14E-20 T 14-10-2018 RY45_03560 bf9baa6366c2077c10fec86ee814019a 307 SUPERFAMILY SSF53850 92 302 2.04E-32 T 14-10-2018 RY45_03560 bf9baa6366c2077c10fec86ee814019a 307 Gene3D G3DSA:3.40.190.10 177 274 1.2E-40 T 14-10-2018 RY45_03560 bf9baa6366c2077c10fec86ee814019a 307 Gene3D G3DSA:1.10.10.10 3 88 2.1E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03560 bf9baa6366c2077c10fec86ee814019a 307 SUPERFAMILY SSF46785 8 87 2.99E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_03560 bf9baa6366c2077c10fec86ee814019a 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 1.4E-13 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03560 bf9baa6366c2077c10fec86ee814019a 307 Pfam PF03466 LysR substrate binding domain 96 301 1.8E-16 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_03560 bf9baa6366c2077c10fec86ee814019a 307 Gene3D G3DSA:3.40.190.10 92 294 1.2E-40 T 14-10-2018 RY45_11740 92cca7ce76e9511323e65e91c3729af3 214 SUPERFAMILY SSF56281 3 209 5.11E-57 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_11740 92cca7ce76e9511323e65e91c3729af3 214 SMART SM00849 13 193 3.4E-36 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_11740 92cca7ce76e9511323e65e91c3729af3 214 Gene3D G3DSA:3.60.15.10 2 211 4.3E-78 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_11740 92cca7ce76e9511323e65e91c3729af3 214 Pfam PF00753 Metallo-beta-lactamase superfamily 11 193 1.4E-28 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_09540 44fc8e7c71a5dd4ec3f87423a7142705 107 SUPERFAMILY SSF89360 1 96 3.14E-33 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RY45_09540 44fc8e7c71a5dd4ec3f87423a7142705 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 14-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 RY45_09540 44fc8e7c71a5dd4ec3f87423a7142705 107 Gene3D G3DSA:2.60.300.12 2 107 5.1E-38 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RY45_09540 44fc8e7c71a5dd4ec3f87423a7142705 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 2.0E-37 T 14-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 RY45_09540 44fc8e7c71a5dd4ec3f87423a7142705 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.2E-25 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RY45_09540 44fc8e7c71a5dd4ec3f87423a7142705 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 7.7E-58 T 14-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 RY45_14775 14d0fd8e62e7a83d2e2a091808b10522 402 SUPERFAMILY SSF64518 1 402 2.09E-64 T 14-10-2018 RY45_14775 14d0fd8e62e7a83d2e2a091808b10522 402 Gene3D G3DSA:1.20.1330.10 40 223 9.2E-39 T 14-10-2018 RY45_14775 14d0fd8e62e7a83d2e2a091808b10522 402 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 401 3.5E-65 T 14-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 RY45_14775 14d0fd8e62e7a83d2e2a091808b10522 402 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 140 9.8E-15 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RY45_14775 14d0fd8e62e7a83d2e2a091808b10522 402 Gene3D G3DSA:1.20.1330.10 269 373 3.7E-10 T 14-10-2018 RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 1.2E-117 T 14-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 Gene3D G3DSA:3.40.50.300 23 184 5.5E-39 T 14-10-2018 RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 330 4.0E-35 T 14-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 Gene3D G3DSA:1.10.8.60 185 258 6.0E-31 T 14-10-2018 RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 336 185.321 T 14-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 SUPERFAMILY SSF46785 260 333 7.26E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 Gene3D G3DSA:1.10.10.10 260 336 5.5E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 3.3E-146 T 14-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 SMART SM00382 54 181 1.0E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 SUPERFAMILY SSF52540 23 254 1.45E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_18680 eb5d7cd5dd13139fdfbe4c36ae78d4c1 336 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 1.5E-32 T 14-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RY45_14580 88020801f499298b7e3414680cc72c47 62 SUPERFAMILY SSF158997 2 58 7.19E-19 T 14-10-2018 RY45_14580 88020801f499298b7e3414680cc72c47 62 Gene3D G3DSA:2.20.25.10 10 62 6.1E-22 T 14-10-2018 RY45_14580 88020801f499298b7e3414680cc72c47 62 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 3 56 26.719 T 14-10-2018 IPR038053 Uncharacterised protein family UPF0434 RY45_14580 88020801f499298b7e3414680cc72c47 62 Pfam PF03966 Trm112p-like protein 5 43 2.5E-8 T 14-10-2018 IPR005651 Trm112-like RY45_13625 d814427ee624a926aa163a4acb9e170a 70 Pfam PF07866 Protein of unknown function (DUF1653) 8 66 1.7E-22 T 14-10-2018 IPR023387 DUF1653-like domain RY45_13625 d814427ee624a926aa163a4acb9e170a 70 Gene3D G3DSA:2.30.30.320 1 70 6.4E-19 T 14-10-2018 IPR037135 DUF1653-like domain superfamily RY45_09660 804e8a66e5601cd4554928b97ccc4156 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 97 8.8E-23 T 14-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RY45_09660 804e8a66e5601cd4554928b97ccc4156 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 19.524 T 14-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RY45_18585 9f8ba1c478a8843d017ee4a50af92717 357 Pfam PF02445 Quinolinate synthetase A protein 36 344 3.4E-103 T 14-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RY45_18585 9f8ba1c478a8843d017ee4a50af92717 357 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 33 345 3.6E-114 T 14-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RY45_18585 9f8ba1c478a8843d017ee4a50af92717 357 Gene3D G3DSA:3.40.50.10800 36 326 6.0E-96 T 14-10-2018 RY45_18585 9f8ba1c478a8843d017ee4a50af92717 357 SUPERFAMILY SSF142754 33 345 3.66E-107 T 14-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RY45_18585 9f8ba1c478a8843d017ee4a50af92717 357 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 351 67.059 T 14-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RY45_18585 9f8ba1c478a8843d017ee4a50af92717 357 Gene3D G3DSA:3.40.50.10800 204 299 6.0E-96 T 14-10-2018 RY45_18585 9f8ba1c478a8843d017ee4a50af92717 357 Gene3D G3DSA:3.40.50.10800 119 343 6.0E-96 T 14-10-2018 RY45_14045 cb6f0b09f4a18144bdf639df955cafea 218 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 18 213 5.1E-46 T 14-10-2018 IPR006214 Bax inhibitor 1-related RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 Pfam PF03173 Putative carbohydrate binding domain 37 196 9.2E-62 T 14-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 333 768 1.4E-112 T 14-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 809 883 2.1E-28 T 14-10-2018 IPR004867 Chitobiase C-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 750 767 2.9E-36 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 433 450 2.9E-36 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 500 518 2.9E-36 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 327 344 2.9E-36 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 732 748 2.9E-36 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 294 314 2.9E-36 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 356 377 2.9E-36 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 PRINTS PR00738 Glycosyl hydrolase family 20 signature 527 540 2.9E-36 T 14-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 Gene3D G3DSA:2.60.40.290 27 167 4.2E-51 T 14-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 Gene3D G3DSA:3.20.20.80 331 821 5.0E-154 T 14-10-2018 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 217 330 1.3E-11 T 14-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 Gene3D G3DSA:2.60.40.10 823 886 5.0E-24 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 SUPERFAMILY SSF55545 205 332 2.49E-20 T 14-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 SUPERFAMILY SSF49384 28 200 1.0E-62 T 14-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 SMART SM01081 36 198 3.2E-95 T 14-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 Gene3D G3DSA:3.30.379.10 210 330 1.2E-16 T 14-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 SUPERFAMILY SSF51445 333 772 8.43E-136 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_08310 41040d94d726c63e01fa7d421e0ea0b7 887 SUPERFAMILY SSF81296 784 885 1.26E-36 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_05045 8956179e85da235950b092cf93f3d6e5 658 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 440 622 4.4E-43 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05045 8956179e85da235950b092cf93f3d6e5 658 Gene3D G3DSA:1.10.287.950 326 657 1.1E-71 T 14-10-2018 RY45_05045 8956179e85da235950b092cf93f3d6e5 658 SMART SM00304 326 379 3.0E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_05045 8956179e85da235950b092cf93f3d6e5 658 Pfam PF00672 HAMP domain 326 376 1.1E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_05045 8956179e85da235950b092cf93f3d6e5 658 SUPERFAMILY SSF58104 351 656 1.18E-71 T 14-10-2018 RY45_05045 8956179e85da235950b092cf93f3d6e5 658 SMART SM00283 394 655 4.9E-71 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.488 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 Gene3D G3DSA:3.30.420.10 2 158 9.5E-50 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 SUPERFAMILY SSF53098 3 156 1.21E-51 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 4.4E-61 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 4.6E-39 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 4.6E-39 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 4.6E-39 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 4.6E-39 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 4.6E-39 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 155 1.1E-67 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RY45_06935 0063e9eee389c3a1482bed59ae6f0d64 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 14-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RY45_18385 83d7d0b0fbd42a9604c470fa206a597d 142 SUPERFAMILY SSF54593 12 130 9.21E-22 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_18385 83d7d0b0fbd42a9604c470fa206a597d 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 124 1.3E-12 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_18385 83d7d0b0fbd42a9604c470fa206a597d 142 Gene3D G3DSA:3.10.180.10 1 129 2.5E-34 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_06135 74d2611aa97b4b94a938bd6ecec217e1 346 PIRSF PIRSF006268 1 345 1.2E-115 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RY45_06135 74d2611aa97b4b94a938bd6ecec217e1 346 SUPERFAMILY SSF143631 32 343 1.41E-102 T 14-10-2018 IPR003374 ApbE-like superfamily RY45_06135 74d2611aa97b4b94a938bd6ecec217e1 346 Pfam PF02424 ApbE family 39 319 7.4E-86 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RY45_06135 74d2611aa97b4b94a938bd6ecec217e1 346 Gene3D G3DSA:3.10.520.20 20 346 3.4E-117 T 14-10-2018 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 PIRSF PIRSF000111 1 864 0.0 T 14-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 Gene3D G3DSA:3.40.50.1970 450 641 2.2E-57 T 14-10-2018 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 Gene3D G3DSA:1.20.1090.10 643 863 5.2E-62 T 14-10-2018 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 Gene3D G3DSA:3.40.309.10 218 404 2.7E-180 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 630 658 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 Gene3D G3DSA:3.40.605.10 12 445 2.7E-180 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 SUPERFAMILY SSF56796 451 862 1.16E-114 T 14-10-2018 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 718 738 - T 14-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 SUPERFAMILY SSF53720 5 453 1.96E-85 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 848 4.4E-112 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RY45_13575 c6f1079f736120fe7eef25f498cb58fa 887 Pfam PF00171 Aldehyde dehydrogenase family 5 401 1.9E-30 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_19830 95501673758f18e8e973edce2578df5a 688 Pfam PF05127 Helicase 191 351 4.4E-50 T 14-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 RY45_19830 95501673758f18e8e973edce2578df5a 688 Gene3D G3DSA:1.20.120.890 555 687 4.0E-7 T 14-10-2018 IPR038321 TmcA, C-terminal domain superfamily RY45_19830 95501673758f18e8e973edce2578df5a 688 Pfam PF13718 GNAT acetyltransferase 2 383 500 8.9E-20 T 14-10-2018 IPR000182 GNAT domain RY45_19830 95501673758f18e8e973edce2578df5a 688 Pfam PF08351 Domain of unknown function (DUF1726) 63 141 8.4E-11 T 14-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 RY45_19830 95501673758f18e8e973edce2578df5a 688 SUPERFAMILY SSF52540 163 294 1.33E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19830 95501673758f18e8e973edce2578df5a 688 SUPERFAMILY SSF55729 392 528 5.23E-11 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_19830 95501673758f18e8e973edce2578df5a 688 Gene3D G3DSA:3.40.630.30 346 547 9.5E-64 T 14-10-2018 RY45_19830 95501673758f18e8e973edce2578df5a 688 Gene3D G3DSA:3.40.50.12320 189 341 1.9E-44 T 14-10-2018 RY45_19830 95501673758f18e8e973edce2578df5a 688 Pfam PF17176 tRNA-binding domain 561 682 3.3E-10 T 14-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain RY45_19830 95501673758f18e8e973edce2578df5a 688 Gene3D G3DSA:3.40.50.11040 2 185 7.2E-46 T 14-10-2018 RY45_19830 95501673758f18e8e973edce2578df5a 688 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 17 685 49.32 T 14-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 RY45_12445 c1e8c515338431bd67c6b32a43796eca 262 Pfam PF01925 Sulfite exporter TauE/SafE 7 257 7.3E-51 T 14-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RY45_11160 e7a806121c0e670f5f2721e820af907e 164 Pfam PF03830 PTS system sorbose subfamily IIB component 3 151 3.6E-38 T 14-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 RY45_11160 e7a806121c0e670f5f2721e820af907e 164 Gene3D G3DSA:3.40.35.10 1 164 5.3E-41 T 14-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 RY45_11160 e7a806121c0e670f5f2721e820af907e 164 SUPERFAMILY SSF52728 1 162 1.31E-37 T 14-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 148 2.4E-66 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 SUPERFAMILY SSF52096 4 315 1.26E-105 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 316 51.052 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 2.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 2.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 2.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 2.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 2.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 2.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 3 316 9.2E-167 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RY45_06375 5dd2a006391f7bcf8c5b78c91ba2a213 316 Gene3D G3DSA:3.90.226.10 1 315 3.2E-122 T 14-10-2018 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 Pfam PF13091 PLD-like domain 37 149 4.5E-7 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 Pfam PF13091 PLD-like domain 257 392 1.6E-19 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 SMART SM00155 129 155 0.34 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 SMART SM00155 350 377 0.041 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 PIRSF PIRSF000850 2 449 6.1E-185 T 14-10-2018 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 SUPERFAMILY SSF56024 246 422 2.04E-21 T 14-10-2018 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 Gene3D G3DSA:3.30.870.10 21 228 4.2E-163 T 14-10-2018 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 SUPERFAMILY SSF56024 18 205 4.4E-28 T 14-10-2018 RY45_01720 eb421a248579c4ab1df08eeae09deaae 449 Gene3D G3DSA:3.30.870.10 15 444 4.2E-163 T 14-10-2018 RY45_06115 7e4d29456ec3ef04c4a64758d85ba146 262 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 5 253 9.6E-86 T 14-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 RY45_06115 7e4d29456ec3ef04c4a64758d85ba146 262 PIRSF PIRSF009437 1 260 2.5E-96 T 14-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 RY45_06115 7e4d29456ec3ef04c4a64758d85ba146 262 Pfam PF04205 FMN-binding domain 147 241 5.4E-15 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 RY45_06115 7e4d29456ec3ef04c4a64758d85ba146 262 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 6 262 35.601 T 14-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 RY45_06115 7e4d29456ec3ef04c4a64758d85ba146 262 SMART SM00900 147 245 8.5E-31 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 RY45_11925 218517eae2cc01a6e7c7131e969b91ad 508 Pfam PF03606 C4-dicarboxylate anaerobic carrier 13 505 1.8E-151 T 14-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 RY45_19250 5f7ff699309f70fe0851e8c3a3ef4366 532 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 17 503 1.5E-191 T 14-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RY45_19250 5f7ff699309f70fe0851e8c3a3ef4366 532 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 54 503 9.1E-152 T 14-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RY45_13490 39bfdb8947c82c039f79a5e7f48bff1c 116 PRINTS PR00332 Histidine triad family signature 6 22 2.1E-18 T 14-10-2018 IPR001310 Histidine triad (HIT) protein RY45_13490 39bfdb8947c82c039f79a5e7f48bff1c 116 PRINTS PR00332 Histidine triad family signature 27 45 2.1E-18 T 14-10-2018 IPR001310 Histidine triad (HIT) protein RY45_13490 39bfdb8947c82c039f79a5e7f48bff1c 116 PRINTS PR00332 Histidine triad family signature 95 105 2.1E-18 T 14-10-2018 IPR001310 Histidine triad (HIT) protein RY45_13490 39bfdb8947c82c039f79a5e7f48bff1c 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 14-10-2018 IPR019808 Histidine triad, conserved site RY45_13490 39bfdb8947c82c039f79a5e7f48bff1c 116 Pfam PF01230 HIT domain 12 108 1.9E-27 T 14-10-2018 IPR001310 Histidine triad (HIT) protein RY45_13490 39bfdb8947c82c039f79a5e7f48bff1c 116 SUPERFAMILY SSF54197 2 112 3.71E-33 T 14-10-2018 IPR036265 HIT-like superfamily RY45_13490 39bfdb8947c82c039f79a5e7f48bff1c 116 Gene3D G3DSA:3.30.428.10 1 111 1.0E-33 T 14-10-2018 IPR036265 HIT-like superfamily RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 277 294 - T 14-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 Pfam PF01568 Molydopterin dinucleotide binding domain 418 525 7.6E-28 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 1 528 1.1E-203 T 14-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 Gene3D G3DSA:3.40.228.10 1 185 2.6E-136 T 14-10-2018 RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 SUPERFAMILY SSF50692 408 544 1.45E-43 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 Gene3D G3DSA:2.40.40.20 415 531 4.8E-43 T 14-10-2018 RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 SUPERFAMILY SSF53706 1 420 1.05E-137 T 14-10-2018 RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 Gene3D G3DSA:3.40.50.740 186 374 2.6E-136 T 14-10-2018 RY45_12960 7aa4aa5735b4b143ce6e389b6347f348 558 Pfam PF00384 Molybdopterin oxidoreductase 1 329 6.3E-71 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_07875 6e5d8bfed8198aecb1254c8407c375c2 333 TIGRFAM TIGR04387 capsid_maj_N4: major capsid protein, N4-gp56 family 4 329 4.4E-113 T 14-10-2018 RY45_12140 2eb4bcae77615725762c7cbe540d9f74 94 Gene3D G3DSA:2.60.120.10 1 93 5.7E-37 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_12140 2eb4bcae77615725762c7cbe540d9f74 94 Pfam PF06865 Protein of unknown function (DUF1255) 3 92 8.9E-36 T 14-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 RY45_12140 2eb4bcae77615725762c7cbe540d9f74 94 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 93 25.367 T 14-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 RY45_12140 2eb4bcae77615725762c7cbe540d9f74 94 SUPERFAMILY SSF51182 1 93 8.91E-36 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_08880 85fb139bb8f9eef24bada593ad5479c7 127 SUPERFAMILY SSF55298 1 125 1.07E-41 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_08880 85fb139bb8f9eef24bada593ad5479c7 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 2 123 5.9E-45 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 RY45_08880 85fb139bb8f9eef24bada593ad5479c7 127 Gene3D G3DSA:3.30.1330.40 1 126 3.8E-48 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_08880 85fb139bb8f9eef24bada593ad5479c7 127 Pfam PF01042 Endoribonuclease L-PSP 8 124 3.5E-38 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RY45_06480 127ea560604efdc0f71e81b5b52c19df 381 SUPERFAMILY SSF52151 1 288 8.11E-49 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_06480 127ea560604efdc0f71e81b5b52c19df 381 Gene3D G3DSA:3.40.1090.10 1 104 4.6E-18 T 14-10-2018 RY45_06480 127ea560604efdc0f71e81b5b52c19df 381 Gene3D G3DSA:3.40.1090.10 121 277 7.5E-6 T 14-10-2018 RY45_06480 127ea560604efdc0f71e81b5b52c19df 381 Pfam PF01734 Patatin-like phospholipase 8 219 1.8E-20 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RY45_13885 1ef73cea227703a2cbe0414c8438801c 85 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 15 85 8.5E-22 T 14-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 RY45_13885 1ef73cea227703a2cbe0414c8438801c 85 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 15 85 3.0E-25 T 14-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 RY45_13885 1ef73cea227703a2cbe0414c8438801c 85 Gene3D G3DSA:1.20.58.90 6 85 5.0E-11 T 14-10-2018 RY45_13885 1ef73cea227703a2cbe0414c8438801c 85 SUPERFAMILY SSF140129 7 81 1.96E-24 T 14-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 RY45_04930 7792dfb049d50a3c7d649e005eefd459 369 SUPERFAMILY SSF53756 1 300 2.01E-20 T 14-10-2018 RY45_04930 7792dfb049d50a3c7d649e005eefd459 369 TIGRFAM TIGR00661 MJ1255: conserved hypothetical protein 2 302 6.5E-71 T 14-10-2018 IPR005262 Conserved hypothetical protein CHP00661 RY45_04930 7792dfb049d50a3c7d649e005eefd459 369 Gene3D G3DSA:3.40.50.2000 2 183 7.6E-6 T 14-10-2018 RY45_04930 7792dfb049d50a3c7d649e005eefd459 369 Gene3D G3DSA:3.40.50.2000 184 302 1.5E-6 T 14-10-2018 RY45_04930 7792dfb049d50a3c7d649e005eefd459 369 Pfam PF13528 Glycosyl transferase family 1 1 300 2.1E-39 T 14-10-2018 RY45_10340 16cf0d10580fe77138c5003226158042 395 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RY45_10340 16cf0d10580fe77138c5003226158042 395 Gene3D G3DSA:3.30.559.10 163 395 2.0E-99 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RY45_10340 16cf0d10580fe77138c5003226158042 395 Gene3D G3DSA:4.10.320.10 93 140 2.6E-17 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RY45_10340 16cf0d10580fe77138c5003226158042 395 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 165 393 1.4E-82 T 14-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RY45_10340 16cf0d10580fe77138c5003226158042 395 SUPERFAMILY SSF47005 98 140 6.28E-12 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RY45_10340 16cf0d10580fe77138c5003226158042 395 Pfam PF02817 e3 binding domain 102 135 4.1E-14 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RY45_10340 16cf0d10580fe77138c5003226158042 395 Gene3D G3DSA:2.40.50.100 1 77 5.5E-23 T 14-10-2018 RY45_10340 16cf0d10580fe77138c5003226158042 395 SUPERFAMILY SSF51230 1 91 1.02E-24 T 14-10-2018 IPR011053 Single hybrid motif RY45_10340 16cf0d10580fe77138c5003226158042 395 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 395 2.1E-182 T 14-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RY45_10340 16cf0d10580fe77138c5003226158042 395 SUPERFAMILY SSF52777 166 394 2.71E-91 T 14-10-2018 RY45_10340 16cf0d10580fe77138c5003226158042 395 Pfam PF00364 Biotin-requiring enzyme 4 76 4.7E-19 T 14-10-2018 IPR000089 Biotin/lipoyl attachment RY45_08410 0344dd9633729475bcb01e3680f0c521 193 Pfam PF02627 Carboxymuconolactone decarboxylase family 40 123 7.3E-13 T 14-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RY45_08410 0344dd9633729475bcb01e3680f0c521 193 SUPERFAMILY SSF69118 1 176 1.05E-43 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RY45_08410 0344dd9633729475bcb01e3680f0c521 193 Gene3D G3DSA:1.20.1290.10 34 173 1.0E-35 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RY45_08410 0344dd9633729475bcb01e3680f0c521 193 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 59 107 2.0E-8 T 14-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RY45_14120 86ecb1549bca5c2e8a244d3b232c5b4b 179 SUPERFAMILY SSF52499 2 179 1.83E-50 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_14120 86ecb1549bca5c2e8a244d3b232c5b4b 179 Gene3D G3DSA:3.40.50.850 1 179 1.1E-53 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_14120 86ecb1549bca5c2e8a244d3b232c5b4b 179 Pfam PF00857 Isochorismatase family 7 156 2.8E-30 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 RY45_14855 5c6f8ad4eb27aa40fd0bd1e1900fee89 180 Gene3D G3DSA:3.60.21.10 1 180 8.5E-59 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_14855 5c6f8ad4eb27aa40fd0bd1e1900fee89 180 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 159 6.3E-23 T 14-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 RY45_14855 5c6f8ad4eb27aa40fd0bd1e1900fee89 180 SUPERFAMILY SSF56300 1 160 1.82E-34 T 14-10-2018 RY45_14855 5c6f8ad4eb27aa40fd0bd1e1900fee89 180 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 161 3.7E-25 T 14-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 RY45_19570 4249075356605bf8687969eec70d8451 412 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 42.978 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 RY45_19570 4249075356605bf8687969eec70d8451 412 Gene3D G3DSA:3.30.460.10 1 121 2.7E-27 T 14-10-2018 RY45_19570 4249075356605bf8687969eec70d8451 412 Pfam PF01966 HD domain 229 327 2.3E-9 T 14-10-2018 IPR006674 HD domain RY45_19570 4249075356605bf8687969eec70d8451 412 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.171 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 RY45_19570 4249075356605bf8687969eec70d8451 412 Gene3D G3DSA:1.10.3090.10 122 407 5.9E-44 T 14-10-2018 RY45_19570 4249075356605bf8687969eec70d8451 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 2.2E-17 T 14-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RY45_19570 4249075356605bf8687969eec70d8451 412 SUPERFAMILY SSF81891 120 400 7.98E-56 T 14-10-2018 RY45_19570 4249075356605bf8687969eec70d8451 412 PIRSF PIRSF000813 1 408 2.3E-191 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 RY45_19570 4249075356605bf8687969eec70d8451 412 SUPERFAMILY SSF81301 2 119 3.49E-29 T 14-10-2018 RY45_19570 4249075356605bf8687969eec70d8451 412 Pfam PF01743 Poly A polymerase head domain 3 122 4.9E-18 T 14-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RY45_19570 4249075356605bf8687969eec70d8451 412 SMART SM00471 224 338 5.3E-4 T 14-10-2018 IPR003607 HD/PDEase domain RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 SUPERFAMILY SSF46785 9 90 1.74E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 9.7E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 SUPERFAMILY SSF53850 100 306 3.75E-30 T 14-10-2018 RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 Pfam PF03466 LysR substrate binding domain 99 299 1.1E-30 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 Gene3D G3DSA:1.10.10.10 5 96 1.1E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 Gene3D G3DSA:3.40.190.10 174 277 6.7E-42 T 14-10-2018 RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 Gene3D G3DSA:3.40.190.10 102 283 6.7E-42 T 14-10-2018 RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 1.4E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 1.4E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_05290 78e562ef2490b5a3713c1a72c5a61768 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 1.4E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04125 9c765d4a6f33a7f8f048d5b3765aba56 312 ProSitePatterns PS01117 MarR-type HTH domain signature. 60 94 - T 14-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RY45_04125 9c765d4a6f33a7f8f048d5b3765aba56 312 SMART SM00347 22 121 1.2E-13 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_04125 9c765d4a6f33a7f8f048d5b3765aba56 312 SUPERFAMILY SSF55729 144 303 1.15E-27 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_04125 9c765d4a6f33a7f8f048d5b3765aba56 312 Pfam PF00583 Acetyltransferase (GNAT) family 193 280 2.2E-12 T 14-10-2018 IPR000182 GNAT domain RY45_04125 9c765d4a6f33a7f8f048d5b3765aba56 312 Gene3D G3DSA:1.10.10.10 4 133 4.5E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04125 9c765d4a6f33a7f8f048d5b3765aba56 312 Pfam PF12802 MarR family 28 85 1.5E-9 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_04125 9c765d4a6f33a7f8f048d5b3765aba56 312 Gene3D G3DSA:3.40.630.30 142 306 1.5E-25 T 14-10-2018 RY45_04125 9c765d4a6f33a7f8f048d5b3765aba56 312 SUPERFAMILY SSF46785 6 135 5.07E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_12625 72f6ae40a270719b6b4c677560a8a2b7 144 PIRSF PIRSF028777 4 141 3.8E-50 T 14-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 RY45_12625 72f6ae40a270719b6b4c677560a8a2b7 144 Pfam PF03733 Inner membrane component domain 7 57 4.0E-14 T 14-10-2018 IPR005185 Inner membrane component domain RY45_12625 72f6ae40a270719b6b4c677560a8a2b7 144 Pfam PF03733 Inner membrane component domain 79 129 1.1E-17 T 14-10-2018 IPR005185 Inner membrane component domain RY45_01235 383623ea757244cdaf865258e8c402ce 303 Gene3D G3DSA:1.20.1510.10 10 207 3.7E-54 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RY45_01235 383623ea757244cdaf865258e8c402ce 303 Pfam PF01545 Cation efflux family 16 207 8.5E-36 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RY45_01235 383623ea757244cdaf865258e8c402ce 303 SUPERFAMILY SSF160240 211 289 6.93E-24 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RY45_01235 383623ea757244cdaf865258e8c402ce 303 Gene3D G3DSA:3.30.70.1350 208 291 7.2E-31 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RY45_01235 383623ea757244cdaf865258e8c402ce 303 SUPERFAMILY SSF161111 9 208 2.88E-47 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RY45_01235 383623ea757244cdaf865258e8c402ce 303 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 15 287 1.0E-66 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RY45_01235 383623ea757244cdaf865258e8c402ce 303 Pfam PF16916 Dimerisation domain of Zinc Transporter 211 287 1.4E-25 T 14-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain RY45_12160 e6dc4dbf05036c8719f18fc0751cccf2 93 Pfam PF05166 YcgL domain 3 75 5.8E-29 T 14-10-2018 IPR027354 YcgL domain RY45_12160 e6dc4dbf05036c8719f18fc0751cccf2 93 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 82 2.0E-21 T 14-10-2018 IPR027354 YcgL domain RY45_12160 e6dc4dbf05036c8719f18fc0751cccf2 93 Gene3D G3DSA:3.10.510.20 1 74 1.4E-27 T 14-10-2018 IPR038068 YcgL-like superfamily RY45_12160 e6dc4dbf05036c8719f18fc0751cccf2 93 SUPERFAMILY SSF160191 1 91 1.16E-35 T 14-10-2018 IPR038068 YcgL-like superfamily RY45_12160 e6dc4dbf05036c8719f18fc0751cccf2 93 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.115 T 14-10-2018 IPR027354 YcgL domain RY45_14845 8d05b86bf210de8f81db78449401fed7 106 SUPERFAMILY SSF101498 1 98 3.27E-19 T 14-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily RY45_14845 8d05b86bf210de8f81db78449401fed7 106 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 98 3.6E-23 T 14-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 RY45_14845 8d05b86bf210de8f81db78449401fed7 106 Pfam PF04316 Anti-sigma-28 factor, FlgM 42 95 6.3E-17 T 14-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal RY45_02925 c9503bcac243a9c3f5d447d822625c20 263 Gene3D G3DSA:3.30.460.10 6 99 8.4E-8 T 14-10-2018 RY45_02925 c9503bcac243a9c3f5d447d822625c20 263 PIRSF PIRSF000819 8 262 7.8E-54 T 14-10-2018 IPR024172 Streptomycin 3''-adenylyltransferase GO:0009012|GO:0046677 RY45_02925 c9503bcac243a9c3f5d447d822625c20 263 Pfam PF13427 Domain of unknown function (DUF4111) 152 254 2.1E-33 T 14-10-2018 IPR025184 Domain of unknown function DUF4111 RY45_02925 c9503bcac243a9c3f5d447d822625c20 263 Pfam PF01909 Nucleotidyltransferase domain 28 98 1.9E-5 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RY45_02925 c9503bcac243a9c3f5d447d822625c20 263 SUPERFAMILY SSF81301 7 102 9.81E-13 T 14-10-2018 RY45_18410 e56765130ee1c14c2f5e6dc0b182ecd3 413 Pfam PF00924 Mechanosensitive ion channel 143 397 9.3E-55 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RY45_18410 e56765130ee1c14c2f5e6dc0b182ecd3 413 SUPERFAMILY SSF50182 187 252 2.98E-11 T 14-10-2018 IPR010920 LSM domain superfamily RY45_20285 26b60b6ca24dac72fba66ae11d58e4f0 263 SMART SM00858 138 200 1.2E-6 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RY45_20285 26b60b6ca24dac72fba66ae11d58e4f0 263 Gene3D G3DSA:2.30.30.760 202 263 1.1E-12 T 14-10-2018 RY45_20285 26b60b6ca24dac72fba66ae11d58e4f0 263 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 126 261 3.6E-37 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RY45_20285 26b60b6ca24dac72fba66ae11d58e4f0 263 Pfam PF13144 Chaperone for flagella basal body P-ring formation 64 260 9.1E-41 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RY45_11945 90dcc9579982d5a590baae06d819fa80 161 Gene3D G3DSA:3.10.20.30 4 82 1.7E-26 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_11945 90dcc9579982d5a590baae06d819fa80 161 Gene3D G3DSA:1.10.150.120 83 161 2.0E-28 T 14-10-2018 RY45_11945 90dcc9579982d5a590baae06d819fa80 161 SUPERFAMILY SSF47741 92 160 3.4E-27 T 14-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RY45_11945 90dcc9579982d5a590baae06d819fa80 161 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 62 4.6E-8 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RY45_11945 90dcc9579982d5a590baae06d819fa80 161 Pfam PF01799 [2Fe-2S] binding domain 81 156 5.3E-28 T 14-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RY45_11945 90dcc9579982d5a590baae06d819fa80 161 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 47 55 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RY45_11945 90dcc9579982d5a590baae06d819fa80 161 SUPERFAMILY SSF54292 10 85 4.98E-21 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_07275 0a8a87642b5e376ee89ff05541fa2d8a 291 PIRSF PIRSF003092 3 281 1.9E-82 T 14-10-2018 IPR025501 ATP binding protein MinD RY45_07275 0a8a87642b5e376ee89ff05541fa2d8a 291 Gene3D G3DSA:3.40.50.300 18 259 2.3E-57 T 14-10-2018 RY45_07275 0a8a87642b5e376ee89ff05541fa2d8a 291 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 19 257 3.4E-21 T 14-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RY45_07275 0a8a87642b5e376ee89ff05541fa2d8a 291 SUPERFAMILY SSF52540 19 282 1.99E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16610 7c9a06987960e68185a587e255e11350 212 Pfam PF13181 Tetratricopeptide repeat 163 190 0.014 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_16610 7c9a06987960e68185a587e255e11350 212 SUPERFAMILY SSF48452 72 184 1.05E-12 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_16610 7c9a06987960e68185a587e255e11350 212 Gene3D G3DSA:1.25.40.10 90 211 1.7E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_03205 703b26eb43ec25ae56d4044c7105481d 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 3.7E-16 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_03205 703b26eb43ec25ae56d4044c7105481d 197 Gene3D G3DSA:1.10.357.10 2 194 3.7E-37 T 14-10-2018 RY45_03205 703b26eb43ec25ae56d4044c7105481d 197 SUPERFAMILY SSF46689 4 77 8.48E-20 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_03205 703b26eb43ec25ae56d4044c7105481d 197 SUPERFAMILY SSF48498 79 185 3.93E-15 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_03205 703b26eb43ec25ae56d4044c7105481d 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.1E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_03205 703b26eb43ec25ae56d4044c7105481d 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.1E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_19945 35cd03548fac8539b670af9ac4c13c37 375 SUPERFAMILY SSF52540 8 211 1.68E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19945 35cd03548fac8539b670af9ac4c13c37 375 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 261 354 8.4E-19 T 14-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RY45_19945 35cd03548fac8539b670af9ac4c13c37 375 SUPERFAMILY SSF90002 261 353 6.54E-19 T 14-10-2018 RY45_19945 35cd03548fac8539b670af9ac4c13c37 375 SMART SM00833 261 355 3.4E-26 T 14-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RY45_19945 35cd03548fac8539b670af9ac4c13c37 375 Gene3D G3DSA:3.40.50.300 7 210 7.4E-61 T 14-10-2018 RY45_19945 35cd03548fac8539b670af9ac4c13c37 375 Gene3D G3DSA:3.30.1220.10 245 354 3.7E-18 T 14-10-2018 IPR036627 CobW-like, C-terminal domain superfamily RY45_19945 35cd03548fac8539b670af9ac4c13c37 375 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 190 1.3E-46 T 14-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RY45_15105 d19704cef0f703c017ee2940bfe62f31 293 Pfam PF02811 PHP domain 4 182 7.6E-9 T 14-10-2018 IPR004013 PHP domain GO:0003824 RY45_15105 d19704cef0f703c017ee2940bfe62f31 293 Gene3D G3DSA:3.20.20.140 4 250 9.0E-84 T 14-10-2018 RY45_15105 d19704cef0f703c017ee2940bfe62f31 293 SMART SM00481 3 70 1.4E-20 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RY45_15105 d19704cef0f703c017ee2940bfe62f31 293 Gene3D G3DSA:1.10.150.650 98 169 9.0E-84 T 14-10-2018 RY45_15105 d19704cef0f703c017ee2940bfe62f31 293 SUPERFAMILY SSF89550 1 266 1.7E-52 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RY45_00830 74b6b983b41099e9bd4b6c1661fd87e4 422 Pfam PF11862 Domain of unknown function (DUF3382) 4 108 8.1E-15 T 14-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal RY45_00830 74b6b983b41099e9bd4b6c1661fd87e4 422 Pfam PF02653 Branched-chain amino acid transport system / permease component 117 403 1.4E-52 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RY45_00715 65cab462ea8af96fdeb66757f9f66693 251 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 243 16.086 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RY45_00715 65cab462ea8af96fdeb66757f9f66693 251 ProSitePatterns PS01218 TatC family signature. 153 172 - T 14-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site RY45_00715 65cab462ea8af96fdeb66757f9f66693 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 153 181 2.2E-50 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RY45_00715 65cab462ea8af96fdeb66757f9f66693 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 84 102 2.2E-50 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RY45_00715 65cab462ea8af96fdeb66757f9f66693 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 102 128 2.2E-50 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RY45_00715 65cab462ea8af96fdeb66757f9f66693 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 7 34 2.2E-50 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RY45_00715 65cab462ea8af96fdeb66757f9f66693 251 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 8 224 6.1E-77 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RY45_00715 65cab462ea8af96fdeb66757f9f66693 251 Pfam PF00902 Sec-independent protein translocase protein (TatC) 11 220 8.1E-66 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RY45_15145 2b6aee7bae3db07fcd7ff087d6775aa9 177 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 168 2.3E-35 T 14-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase RY45_06550 24557b53b48793e1bd2f8f902e8949e1 204 Pfam PF03458 UPF0126 domain 5 76 5.0E-18 T 14-10-2018 IPR005115 Uncharacterised domain UPF0126 RY45_06550 24557b53b48793e1bd2f8f902e8949e1 204 Pfam PF03458 UPF0126 domain 90 162 2.9E-18 T 14-10-2018 IPR005115 Uncharacterised domain UPF0126 RY45_05635 ce1923371e551295e623711640bb334b 353 SUPERFAMILY SSF52738 167 351 4.71E-71 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal RY45_05635 ce1923371e551295e623711640bb334b 353 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 353 39.629 T 14-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_05635 ce1923371e551295e623711640bb334b 353 Pfam PF00072 Response regulator receiver domain 6 109 7.8E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05635 ce1923371e551295e623711640bb334b 353 Gene3D G3DSA:3.40.50.2300 2 140 3.4E-33 T 14-10-2018 RY45_05635 ce1923371e551295e623711640bb334b 353 Pfam PF01339 CheB methylesterase 172 350 1.3E-60 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_05635 ce1923371e551295e623711640bb334b 353 SMART SM00448 4 120 2.4E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05635 ce1923371e551295e623711640bb334b 353 Gene3D G3DSA:3.40.50.180 160 353 2.9E-73 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal RY45_05635 ce1923371e551295e623711640bb334b 353 PIRSF PIRSF000876 1 353 1.1E-134 T 14-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RY45_05635 ce1923371e551295e623711640bb334b 353 SUPERFAMILY SSF52172 1 110 1.25E-29 T 14-10-2018 IPR011006 CheY-like superfamily RY45_18375 35b3150aee4991a969b8ccc3a23fcd17 337 Pfam PF14082 Domain of unknown function (DUF4263) 146 312 2.1E-27 T 14-10-2018 IPR025359 Protein of unknown function DUF4263 RY45_01360 a39764c3c734bb7e05270be0d5cba549 301 Gene3D G3DSA:3.40.190.290 91 287 3.0E-69 T 14-10-2018 RY45_01360 a39764c3c734bb7e05270be0d5cba549 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 63 3.9E-17 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_01360 a39764c3c734bb7e05270be0d5cba549 301 Gene3D G3DSA:1.10.10.10 5 88 1.2E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_01360 a39764c3c734bb7e05270be0d5cba549 301 Pfam PF03466 LysR substrate binding domain 89 288 1.1E-47 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_01360 a39764c3c734bb7e05270be0d5cba549 301 SUPERFAMILY SSF53850 90 291 5.79E-48 T 14-10-2018 RY45_01360 a39764c3c734bb7e05270be0d5cba549 301 SUPERFAMILY SSF46785 4 85 6.53E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_18350 5eeb21abeb45fb5e4acdebeab6107110 136 SUPERFAMILY SSF54631 1 131 5.81E-31 T 14-10-2018 RY45_18350 5eeb21abeb45fb5e4acdebeab6107110 136 SMART SM00116 10 57 9.0E-8 T 14-10-2018 IPR000644 CBS domain RY45_18350 5eeb21abeb45fb5e4acdebeab6107110 136 SMART SM00116 84 131 5.1E-8 T 14-10-2018 IPR000644 CBS domain RY45_18350 5eeb21abeb45fb5e4acdebeab6107110 136 Pfam PF00571 CBS domain 3 57 1.5E-11 T 14-10-2018 IPR000644 CBS domain RY45_18350 5eeb21abeb45fb5e4acdebeab6107110 136 Pfam PF00571 CBS domain 78 131 7.6E-14 T 14-10-2018 IPR000644 CBS domain RY45_18350 5eeb21abeb45fb5e4acdebeab6107110 136 Gene3D G3DSA:3.10.580.10 1 135 1.6E-36 T 14-10-2018 RY45_11155 ab2832cc59d302fe0479d8d0656fcc86 143 Pfam PF03610 PTS system fructose IIA component 4 106 4.1E-17 T 14-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RY45_11155 ab2832cc59d302fe0479d8d0656fcc86 143 SUPERFAMILY SSF53062 1 131 6.93E-29 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RY45_11155 ab2832cc59d302fe0479d8d0656fcc86 143 Gene3D G3DSA:3.40.50.510 1 142 1.1E-30 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RY45_16805 77878fd25cb3fbe343e0759078268813 234 PIRSF PIRSF016262 14 234 3.8E-58 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RY45_16805 77878fd25cb3fbe343e0759078268813 234 Gene3D G3DSA:3.30.930.10 11 222 1.5E-61 T 14-10-2018 RY45_16805 77878fd25cb3fbe343e0759078268813 234 Pfam PF03099 Biotin/lipoate A/B protein ligase family 70 178 3.4E-8 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RY45_16805 77878fd25cb3fbe343e0759078268813 234 SUPERFAMILY SSF55681 14 224 9.94E-67 T 14-10-2018 RY45_16805 77878fd25cb3fbe343e0759078268813 234 Hamap MF_00013 Octanoyltransferase [lipB]. 15 225 37.124 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RY45_16805 77878fd25cb3fbe343e0759078268813 234 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 85 138 4.0E-15 T 14-10-2018 RY45_16805 77878fd25cb3fbe343e0759078268813 234 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 81 96 - T 14-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RY45_16805 77878fd25cb3fbe343e0759078268813 234 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 40 222 6.4E-62 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RY45_17615 851f6f3d898819cb1b570f5e1011fc77 417 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 323 344 - T 14-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RY45_17615 851f6f3d898819cb1b570f5e1011fc77 417 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 10 406 2.1E-165 T 14-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RY45_17615 851f6f3d898819cb1b570f5e1011fc77 417 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 2 416 39.786 T 14-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RY45_17615 851f6f3d898819cb1b570f5e1011fc77 417 SUPERFAMILY SSF53720 4 410 2.09E-108 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_17615 851f6f3d898819cb1b570f5e1011fc77 417 Gene3D G3DSA:3.40.605.10 10 408 5.7E-150 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_17615 851f6f3d898819cb1b570f5e1011fc77 417 Pfam PF00171 Aldehyde dehydrogenase family 4 283 2.8E-14 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_17615 851f6f3d898819cb1b570f5e1011fc77 417 Gene3D G3DSA:3.40.309.10 223 374 5.7E-150 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_17615 851f6f3d898819cb1b570f5e1011fc77 417 PIRSF PIRSF000151 1 417 2.3E-163 T 14-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RY45_06430 acdd754f2a27db065768ca84de85383e 303 ProSitePatterns PS00099 Thiolases active site. 107 120 - T 14-10-2018 IPR020610 Thiolase, active site GO:0016747 RY45_06430 acdd754f2a27db065768ca84de85383e 303 Gene3D G3DSA:1.10.10.800 139 229 2.1E-97 T 14-10-2018 RY45_06430 acdd754f2a27db065768ca84de85383e 303 Gene3D G3DSA:3.40.50.1820 6 285 2.1E-97 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_06430 acdd754f2a27db065768ca84de85383e 303 SUPERFAMILY SSF53474 2 303 1.15E-42 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_06430 acdd754f2a27db065768ca84de85383e 303 Pfam PF01738 Dienelactone hydrolase family 23 130 9.7E-11 T 14-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RY45_16705 61d766897b73088de5560e07227ac6f3 387 SUPERFAMILY SSF51905 4 378 2.41E-61 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_16705 61d766897b73088de5560e07227ac6f3 387 Pfam PF01494 FAD binding domain 4 313 1.0E-33 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 RY45_16705 61d766897b73088de5560e07227ac6f3 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 4.8E-20 T 14-10-2018 RY45_16705 61d766897b73088de5560e07227ac6f3 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 4.8E-20 T 14-10-2018 RY45_16705 61d766897b73088de5560e07227ac6f3 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 4.8E-20 T 14-10-2018 RY45_16705 61d766897b73088de5560e07227ac6f3 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 4.8E-20 T 14-10-2018 RY45_16705 61d766897b73088de5560e07227ac6f3 387 Gene3D G3DSA:3.50.50.60 5 333 1.2E-103 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_16705 61d766897b73088de5560e07227ac6f3 387 Gene3D G3DSA:3.30.9.50 80 267 1.2E-103 T 14-10-2018 RY45_16705 61d766897b73088de5560e07227ac6f3 387 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 385 2.2E-115 T 14-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 RY45_18345 0719a2784c7139b3de843a79e932b8c4 151 SUPERFAMILY SSF141322 91 150 2.35E-5 T 14-10-2018 RY45_18345 0719a2784c7139b3de843a79e932b8c4 151 Gene3D G3DSA:2.40.50.140 84 151 8.5E-7 T 14-10-2018 RY45_18345 0719a2784c7139b3de843a79e932b8c4 151 Pfam PF01957 NfeD-like C-terminal, partner-binding 12 149 1.7E-25 T 14-10-2018 IPR002810 NfeD-like, C-terminal domain RY45_14910 255e9a11de71769ceb3c38414ee47155 616 SUPERFAMILY SSF53850 56 559 7.14E-95 T 14-10-2018 RY45_14910 255e9a11de71769ceb3c38414ee47155 616 Gene3D G3DSA:3.40.190.10 30 319 5.8E-49 T 14-10-2018 RY45_14910 255e9a11de71769ceb3c38414ee47155 616 PIRSF PIRSF002741 31 570 2.6E-72 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_14910 255e9a11de71769ceb3c38414ee47155 616 Gene3D G3DSA:3.10.105.10 320 543 8.0E-43 T 14-10-2018 RY45_14910 255e9a11de71769ceb3c38414ee47155 616 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 105 487 1.2E-59 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_05935 b973648ce5fa06fd787a82c193494038 339 Gene3D G3DSA:3.10.20.30 256 339 1.5E-16 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_05935 b973648ce5fa06fd787a82c193494038 339 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 290 298 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RY45_05935 b973648ce5fa06fd787a82c193494038 339 Pfam PF00970 Oxidoreductase FAD-binding domain 18 101 4.9E-10 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RY45_05935 b973648ce5fa06fd787a82c193494038 339 Gene3D G3DSA:3.40.50.80 107 241 3.0E-32 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_05935 b973648ce5fa06fd787a82c193494038 339 Gene3D G3DSA:2.40.30.10 4 101 2.1E-22 T 14-10-2018 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 54 61 4.7E-8 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 4.7E-8 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 148 159 4.7E-8 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 205 213 4.7E-8 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00406 Cytochrome B5 reductase signature 54 61 4.4E-10 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00406 Cytochrome B5 reductase signature 88 102 4.4E-10 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00406 Cytochrome B5 reductase signature 205 213 4.4E-10 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00406 Cytochrome B5 reductase signature 111 130 4.4E-10 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 RY45_05935 b973648ce5fa06fd787a82c193494038 339 PRINTS PR00406 Cytochrome B5 reductase signature 148 159 4.4E-10 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 RY45_05935 b973648ce5fa06fd787a82c193494038 339 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 263 331 5.7E-7 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RY45_05935 b973648ce5fa06fd787a82c193494038 339 Pfam PF00175 Oxidoreductase NAD-binding domain 112 219 2.2E-14 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RY45_05935 b973648ce5fa06fd787a82c193494038 339 SUPERFAMILY SSF63380 6 102 5.11E-23 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_05935 b973648ce5fa06fd787a82c193494038 339 SUPERFAMILY SSF52343 91 235 4.98E-35 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_05935 b973648ce5fa06fd787a82c193494038 339 SUPERFAMILY SSF54292 228 338 2.36E-21 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_02280 5ea9f0dd907c22e85b39642e14af4eb8 273 SUPERFAMILY SSF54523 7 30 8.63E-5 T 14-10-2018 RY45_02280 5ea9f0dd907c22e85b39642e14af4eb8 273 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 6.9E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02280 5ea9f0dd907c22e85b39642e14af4eb8 273 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 7.0E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02280 5ea9f0dd907c22e85b39642e14af4eb8 273 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_16490 dc36a21d9a9ac3226e488b129234f47a 546 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 182 5.9E-17 T 14-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RY45_16490 dc36a21d9a9ac3226e488b129234f47a 546 SMART SM00304 215 269 2.5E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_16490 dc36a21d9a9ac3226e488b129234f47a 546 SUPERFAMILY SSF58104 244 546 5.49E-79 T 14-10-2018 RY45_16490 dc36a21d9a9ac3226e488b129234f47a 546 Gene3D G3DSA:1.10.287.950 215 546 2.8E-80 T 14-10-2018 RY45_16490 dc36a21d9a9ac3226e488b129234f47a 546 SMART SM00283 284 545 1.3E-84 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_16490 dc36a21d9a9ac3226e488b129234f47a 546 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 511 8.2E-44 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_16490 dc36a21d9a9ac3226e488b129234f47a 546 Pfam PF00672 HAMP domain 224 265 1.3E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_00995 3cbad5483ec71a89d1c7d6683b7ab2c7 645 Gene3D G3DSA:3.40.50.12780 67 515 3.2E-58 T 14-10-2018 RY45_00995 3cbad5483ec71a89d1c7d6683b7ab2c7 645 Gene3D G3DSA:3.30.300.30 519 642 3.5E-17 T 14-10-2018 RY45_00995 3cbad5483ec71a89d1c7d6683b7ab2c7 645 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 37 92 1.0E-6 T 14-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 RY45_00995 3cbad5483ec71a89d1c7d6683b7ab2c7 645 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 5 643 9.6E-273 T 14-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 RY45_00995 3cbad5483ec71a89d1c7d6683b7ab2c7 645 SUPERFAMILY SSF56801 21 636 1.83E-128 T 14-10-2018 RY45_00995 3cbad5483ec71a89d1c7d6683b7ab2c7 645 Pfam PF13193 AMP-binding enzyme C-terminal domain 537 607 1.1E-6 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_00995 3cbad5483ec71a89d1c7d6683b7ab2c7 645 Pfam PF00501 AMP-binding enzyme 95 519 1.1E-49 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_00995 3cbad5483ec71a89d1c7d6683b7ab2c7 645 ProSitePatterns PS00455 Putative AMP-binding domain signature. 263 274 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_02425 6e2f71f5989ffbb37b93ad0a7f7d2ff9 236 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 16 219 3.9E-35 T 14-10-2018 IPR005519 Acid phosphatase, class B-like RY45_02425 6e2f71f5989ffbb37b93ad0a7f7d2ff9 236 TIGRFAM TIGR01672 AphA: HAD phosphatase, family IIIB 13 236 2.3E-97 T 14-10-2018 IPR010025 HAD-superfamily phosphatase, subfamily IIIB, AphA GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 RY45_02425 6e2f71f5989ffbb37b93ad0a7f7d2ff9 236 PIRSF PIRSF017818 3 236 9.3E-104 T 14-10-2018 IPR010025 HAD-superfamily phosphatase, subfamily IIIB, AphA GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 RY45_02425 6e2f71f5989ffbb37b93ad0a7f7d2ff9 236 Gene3D G3DSA:3.40.50.1000 25 236 4.0E-86 T 14-10-2018 IPR023214 HAD superfamily RY45_02425 6e2f71f5989ffbb37b93ad0a7f7d2ff9 236 SUPERFAMILY SSF56784 32 236 6.48E-69 T 14-10-2018 IPR036412 HAD-like superfamily RY45_13150 7c8f95c316dccdee90cd211fddb69488 402 Pfam PF00563 EAL domain 150 384 1.5E-61 T 14-10-2018 IPR001633 EAL domain RY45_13150 7c8f95c316dccdee90cd211fddb69488 402 Pfam PF00072 Response regulator receiver domain 12 128 6.7E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13150 7c8f95c316dccdee90cd211fddb69488 402 Gene3D G3DSA:3.40.50.2300 10 133 4.5E-23 T 14-10-2018 RY45_13150 7c8f95c316dccdee90cd211fddb69488 402 Gene3D G3DSA:3.20.20.450 147 401 1.2E-75 T 14-10-2018 IPR035919 EAL domain superfamily RY45_13150 7c8f95c316dccdee90cd211fddb69488 402 SUPERFAMILY SSF141868 150 398 5.1E-73 T 14-10-2018 IPR035919 EAL domain superfamily RY45_13150 7c8f95c316dccdee90cd211fddb69488 402 SMART SM00448 9 128 3.7E-15 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13150 7c8f95c316dccdee90cd211fddb69488 402 SUPERFAMILY SSF52172 7 146 9.25E-24 T 14-10-2018 IPR011006 CheY-like superfamily RY45_13150 7c8f95c316dccdee90cd211fddb69488 402 SMART SM00052 144 389 2.4E-69 T 14-10-2018 IPR001633 EAL domain RY45_10065 4d32d184a9af53da8fb66a3abfcf9206 261 Gene3D G3DSA:3.40.50.300 4 261 4.2E-68 T 14-10-2018 RY45_10065 4d32d184a9af53da8fb66a3abfcf9206 261 Pfam PF00005 ABC transporter 32 179 8.7E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_10065 4d32d184a9af53da8fb66a3abfcf9206 261 SMART SM00382 40 229 5.8E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10065 4d32d184a9af53da8fb66a3abfcf9206 261 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_10065 4d32d184a9af53da8fb66a3abfcf9206 261 SUPERFAMILY SSF52540 6 251 5.84E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_03555 be3350c668766d5181a48d70d493accc 107 Pfam PF08850 Domain of unknown function (DUF1820) 7 100 2.3E-40 T 14-10-2018 IPR014949 Protein of unknown function DUF1820 RY45_13905 863e6e22e24f768615120437935b8b6f 141 Pfam PF05932 Tir chaperone protein (CesT) family 4 121 2.9E-23 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 RY45_13905 863e6e22e24f768615120437935b8b6f 141 TIGRFAM TIGR02513 type_III_yscB: type III secretion system chaperone, YscB family 2 141 9.6E-46 T 14-10-2018 IPR013353 Type III secretion system chaperone YscB RY45_13905 863e6e22e24f768615120437935b8b6f 141 Gene3D G3DSA:3.30.1460.10 1 127 5.7E-40 T 14-10-2018 RY45_13905 863e6e22e24f768615120437935b8b6f 141 SUPERFAMILY SSF69635 2 127 9.42E-47 T 14-10-2018 RY45_20250 c69a03cbbebcb2256df590d0310e2beb 223 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 220 26.289 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_20250 c69a03cbbebcb2256df590d0310e2beb 223 Pfam PF02107 Flagellar L-ring protein 47 219 1.8E-60 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_20250 c69a03cbbebcb2256df590d0310e2beb 223 PRINTS PR01008 Flagellar L-ring protein signature 162 178 2.5E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_20250 c69a03cbbebcb2256df590d0310e2beb 223 PRINTS PR01008 Flagellar L-ring protein signature 68 80 2.5E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_20250 c69a03cbbebcb2256df590d0310e2beb 223 PRINTS PR01008 Flagellar L-ring protein signature 183 197 2.5E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_20250 c69a03cbbebcb2256df590d0310e2beb 223 PRINTS PR01008 Flagellar L-ring protein signature 136 151 2.5E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_20250 c69a03cbbebcb2256df590d0310e2beb 223 PRINTS PR01008 Flagellar L-ring protein signature 199 213 2.5E-23 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RY45_10585 a5244e939123810ad46f2224091f27ad 120 SUPERFAMILY SSF103642 100 120 4.74E-8 T 14-10-2018 RY45_10585 a5244e939123810ad46f2224091f27ad 120 Pfam PF02810 SEC-C motif 103 120 1.2E-10 T 14-10-2018 IPR004027 SEC-C motif RY45_10585 a5244e939123810ad46f2224091f27ad 120 Gene3D G3DSA:3.10.450.50 1 120 5.7E-46 T 14-10-2018 RY45_10585 a5244e939123810ad46f2224091f27ad 120 SUPERFAMILY SSF54427 1 93 2.63E-30 T 14-10-2018 IPR032710 NTF2-like domain superfamily RY45_21555 e76620a38c34f519c1cef436d581a265 301 SUPERFAMILY SSF161098 14 291 1.96E-54 T 14-10-2018 IPR035906 MetI-like superfamily RY45_21555 e76620a38c34f519c1cef436d581a265 301 Gene3D G3DSA:1.10.3720.10 13 296 6.7E-52 T 14-10-2018 IPR035906 MetI-like superfamily RY45_21555 e76620a38c34f519c1cef436d581a265 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 290 1.1E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_05450 4be1dec90fde7b6604e77e4ec5c3356b 299 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 298 66.107 T 14-10-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 RY45_05450 4be1dec90fde7b6604e77e4ec5c3356b 299 Pfam PF01522 Polysaccharide deacetylase 15 170 2.3E-11 T 14-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RY45_05450 4be1dec90fde7b6604e77e4ec5c3356b 299 SUPERFAMILY SSF88713 4 282 7.51E-28 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RY45_00405 9c0c304dc15665ebbff24a96aa1d54a0 299 Pfam PF04865 Baseplate J-like protein 119 263 1.2E-17 T 14-10-2018 IPR006949 Baseplate protein J-like RY45_00405 9c0c304dc15665ebbff24a96aa1d54a0 299 PIRSF PIRSF020481 1 299 4.2E-109 T 14-10-2018 IPR014507 Baseplate assembly protein J, predicted RY45_14295 6fcd44593b58651f6913b5905b14f70e 527 Pfam PF05228 CHASE4 domain 52 201 2.5E-38 T 14-10-2018 IPR007892 CHASE4 RY45_14295 6fcd44593b58651f6913b5905b14f70e 527 Gene3D G3DSA:3.30.450.40 357 526 1.1E-6 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_14295 6fcd44593b58651f6913b5905b14f70e 527 SUPERFAMILY SSF55781 374 513 7.85E-9 T 14-10-2018 RY45_14295 6fcd44593b58651f6913b5905b14f70e 527 SMART SM00065 371 525 0.0053 T 14-10-2018 IPR003018 GAF domain GO:0005515 RY45_21670 72f503262565a6b90af280794c27eb62 456 Gene3D G3DSA:3.30.300.30 366 455 1.6E-7 T 14-10-2018 RY45_21670 72f503262565a6b90af280794c27eb62 456 Gene3D G3DSA:3.40.50.12780 8 361 3.1E-57 T 14-10-2018 RY45_21670 72f503262565a6b90af280794c27eb62 456 Pfam PF00501 AMP-binding enzyme 26 367 7.4E-40 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_21670 72f503262565a6b90af280794c27eb62 456 SUPERFAMILY SSF56801 9 453 1.11E-70 T 14-10-2018 RY45_21670 72f503262565a6b90af280794c27eb62 456 ProSitePatterns PS00455 Putative AMP-binding domain signature. 123 134 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_20590 2bbd74a3aa2f80257d71448e347cd945 1027 Gene3D G3DSA:1.10.3810.10 148 386 1.1E-6 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20590 2bbd74a3aa2f80257d71448e347cd945 1027 SUPERFAMILY SSF56601 575 1017 2.89E-30 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_20590 2bbd74a3aa2f80257d71448e347cd945 1027 Pfam PF00912 Transglycosylase 155 351 1.7E-23 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20590 2bbd74a3aa2f80257d71448e347cd945 1027 Gene3D G3DSA:3.40.710.10 809 958 1.3E-14 T 14-10-2018 RY45_20590 2bbd74a3aa2f80257d71448e347cd945 1027 SUPERFAMILY SSF53955 164 383 2.28E-9 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_16955 28ce86f52803b81e3ba51cee31799c7d 262 Pfam PF13247 4Fe-4S dicluster domain 102 196 4.7E-29 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_16955 28ce86f52803b81e3ba51cee31799c7d 262 Gene3D G3DSA:3.30.70.20 90 256 3.3E-60 T 14-10-2018 RY45_16955 28ce86f52803b81e3ba51cee31799c7d 262 Gene3D G3DSA:3.30.70.20 37 89 4.7E-8 T 14-10-2018 RY45_16955 28ce86f52803b81e3ba51cee31799c7d 262 SUPERFAMILY SSF54862 48 231 3.24E-68 T 14-10-2018 RY45_16955 28ce86f52803b81e3ba51cee31799c7d 262 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 141 152 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_16715 893721c7875f93ba0241b31bf3045396 347 SUPERFAMILY SSF52540 94 323 6.48E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16715 893721c7875f93ba0241b31bf3045396 347 Pfam PF02562 PhoH-like protein 123 326 2.1E-96 T 14-10-2018 IPR003714 PhoH-like protein GO:0005524 RY45_16715 893721c7875f93ba0241b31bf3045396 347 Gene3D G3DSA:3.40.50.300 120 326 5.5E-74 T 14-10-2018 RY45_21850 e320343fb39b7789dbe9cb1e86384807 318 SUPERFAMILY SSF69593 19 288 1.7E-29 T 14-10-2018 RY45_21850 e320343fb39b7789dbe9cb1e86384807 318 SMART SM00563 89 231 1.5E-20 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_21850 e320343fb39b7789dbe9cb1e86384807 318 Pfam PF01553 Acyltransferase 76 216 1.2E-13 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 PRINTS PR01401 Mutator MutT protein signature 6 27 6.2E-6 T 14-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 PRINTS PR01401 Mutator MutT protein signature 81 94 6.2E-6 T 14-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 PRINTS PR00502 NUDIX hydrolase family signature 51 66 2.1E-6 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 PRINTS PR00502 NUDIX hydrolase family signature 37 51 2.1E-6 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 Pfam PF00293 NUDIX domain 11 126 5.4E-20 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 SUPERFAMILY SSF55811 5 130 9.21E-36 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 Gene3D G3DSA:3.90.79.10 5 133 1.6E-37 T 14-10-2018 RY45_20065 03d2b95da3c97a96416c55e53f585915 138 TIGRFAM TIGR00586 mutt: mutator mutT protein 5 131 7.9E-41 T 14-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 RY45_09885 0f28f91b39399d26b72f05445d12fd50 76 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 9 70 5.2E-27 T 14-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor RY45_09885 0f28f91b39399d26b72f05445d12fd50 76 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 17 72 1.0E-16 T 14-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor RY45_08630 ef8774b6c1c25cc5f743d73bd0007ace 236 Gene3D G3DSA:1.20.58.220 1 119 2.8E-41 T 14-10-2018 IPR038078 PhoU-like domain superfamily RY45_08630 ef8774b6c1c25cc5f743d73bd0007ace 236 SUPERFAMILY SSF109755 13 228 1.15E-70 T 14-10-2018 RY45_08630 ef8774b6c1c25cc5f743d73bd0007ace 236 Pfam PF01895 PhoU domain 28 112 9.2E-21 T 14-10-2018 IPR026022 PhoU domain RY45_08630 ef8774b6c1c25cc5f743d73bd0007ace 236 Pfam PF01895 PhoU domain 127 212 1.4E-17 T 14-10-2018 IPR026022 PhoU domain RY45_08630 ef8774b6c1c25cc5f743d73bd0007ace 236 PIRSF PIRSF003107 7 226 1.4E-70 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RY45_08630 ef8774b6c1c25cc5f743d73bd0007ace 236 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 4.5E-75 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RY45_08630 ef8774b6c1c25cc5f743d73bd0007ace 236 Gene3D G3DSA:1.20.58.220 120 233 3.4E-37 T 14-10-2018 IPR038078 PhoU-like domain superfamily RY45_20855 6b904ad95b874ed59d5e9096f6b7e53a 299 SUPERFAMILY SSF103481 36 140 1.03E-7 T 14-10-2018 RY45_20855 6b904ad95b874ed59d5e9096f6b7e53a 299 Pfam PF00892 EamA-like transporter family 147 279 6.1E-21 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_20855 6b904ad95b874ed59d5e9096f6b7e53a 299 Pfam PF00892 EamA-like transporter family 4 138 3.7E-17 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_20855 6b904ad95b874ed59d5e9096f6b7e53a 299 SUPERFAMILY SSF103481 186 281 5.89E-11 T 14-10-2018 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 14-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 Gene3D G3DSA:1.20.1440.90 303 386 6.0E-22 T 14-10-2018 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 SUPERFAMILY SSF51621 6 877 0.0 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 Pfam PF00311 Phosphoenolpyruvate carboxylase 128 877 2.2E-282 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 877 18.293 T 14-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 706 732 3.1E-65 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 3.1E-65 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 245 260 3.1E-65 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 383 403 3.1E-65 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 532 552 3.1E-65 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 574 603 3.1E-65 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 186 202 3.1E-65 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_03395 618c783d8fc9788f74609b8769d979c1 877 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 534 546 - T 14-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RY45_15745 c24ca99e7973fe69efb10c0cc143094e 547 SUPERFAMILY SSF51735 417 543 1.83E-28 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_15745 c24ca99e7973fe69efb10c0cc143094e 547 Pfam PF02254 TrkA-N domain 419 532 2.7E-26 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RY45_15745 c24ca99e7973fe69efb10c0cc143094e 547 Gene3D G3DSA:1.20.1530.20 7 399 5.0E-74 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily RY45_15745 c24ca99e7973fe69efb10c0cc143094e 547 Gene3D G3DSA:3.40.50.720 414 547 3.8E-31 T 14-10-2018 RY45_15745 c24ca99e7973fe69efb10c0cc143094e 547 Pfam PF00999 Sodium/hydrogen exchanger family 15 385 4.8E-69 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RY45_10570 f7ac38af4ca10f49c0c07615ce0da487 400 Pfam PF13183 4Fe-4S dicluster domain 10 74 1.2E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_10570 f7ac38af4ca10f49c0c07615ce0da487 400 SUPERFAMILY SSF46548 10 86 3.31E-15 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_10570 f7ac38af4ca10f49c0c07615ce0da487 400 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_10570 f7ac38af4ca10f49c0c07615ce0da487 400 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 7 399 2.0E-228 T 14-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 RY45_10570 f7ac38af4ca10f49c0c07615ce0da487 400 Gene3D G3DSA:1.10.1060.10 3 90 2.4E-8 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_10570 f7ac38af4ca10f49c0c07615ce0da487 400 Pfam PF02754 Cysteine-rich domain 297 380 2.2E-12 T 14-10-2018 IPR004017 Cysteine-rich domain RY45_10570 f7ac38af4ca10f49c0c07615ce0da487 400 Pfam PF02754 Cysteine-rich domain 167 253 3.2E-15 T 14-10-2018 IPR004017 Cysteine-rich domain RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 SUPERFAMILY SSF109604 324 494 1.26E-33 T 14-10-2018 RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 136 1.1E-7 T 14-10-2018 IPR000014 PAS domain RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 Pfam PF08448 PAS fold 23 130 6.9E-19 T 14-10-2018 IPR013656 PAS fold-4 RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 SUPERFAMILY SSF55785 21 131 1.01E-14 T 14-10-2018 IPR035965 PAS domain superfamily RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 Gene3D G3DSA:3.30.450.20 13 140 2.5E-21 T 14-10-2018 RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 Gene3D G3DSA:1.10.3210.10 307 498 1.2E-61 T 14-10-2018 RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 Gene3D G3DSA:3.30.450.40 141 296 2.0E-9 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 SMART SM00471 328 463 1.4E-9 T 14-10-2018 IPR003607 HD/PDEase domain RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 SUPERFAMILY SSF55781 123 287 2.62E-10 T 14-10-2018 RY45_09630 7b89ddcf12f19f8ca8309784a2f130f9 508 Pfam PF13487 HD domain 383 445 6.4E-19 T 14-10-2018 RY45_13715 32316d02d63db56ab902f611a68b7249 440 Pfam PF03553 Na+/H+ antiporter family 150 434 6.8E-69 T 14-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 RY45_13715 32316d02d63db56ab902f611a68b7249 440 PRINTS PR00173 Glutamate-aspartate symporter signature 373 392 7.8E-5 T 14-10-2018 RY45_13715 32316d02d63db56ab902f611a68b7249 440 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 7.8E-5 T 14-10-2018 RY45_13715 32316d02d63db56ab902f611a68b7249 440 Pfam PF13726 Na+-H+ antiporter family 2 88 1.7E-35 T 14-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal RY45_15135 5e99723af73ceb6a63ec31237d9df66c 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 36.366 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RY45_15135 5e99723af73ceb6a63ec31237d9df66c 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 4.2E-96 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RY45_15135 5e99723af73ceb6a63ec31237d9df66c 268 SUPERFAMILY SSF51366 1 266 7.35E-88 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RY45_15135 5e99723af73ceb6a63ec31237d9df66c 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 14-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RY45_15135 5e99723af73ceb6a63ec31237d9df66c 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 4.6E-89 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RY45_15135 5e99723af73ceb6a63ec31237d9df66c 268 Gene3D G3DSA:3.20.20.70 1 268 2.1E-91 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_05945 93d0759e795cac1994624e839cce5d4f 249 Pfam PF13462 Thioredoxin 80 240 8.7E-24 T 14-10-2018 IPR012336 Thioredoxin-like fold RY45_05945 93d0759e795cac1994624e839cce5d4f 249 SUPERFAMILY SSF52833 72 229 3.95E-40 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_05945 93d0759e795cac1994624e839cce5d4f 249 Gene3D G3DSA:3.40.30.10 69 243 3.9E-42 T 14-10-2018 RY45_19090 1a74dccddeb6f85f97c6b91212c44d44 395 Pfam PF04865 Baseplate J-like protein 83 327 1.2E-20 T 14-10-2018 IPR006949 Baseplate protein J-like RY45_04480 82213038ac9c9d863ba31a1c822aa7f7 326 Pfam PF17188 MucB/RseB C-terminal domain 219 317 1.2E-29 T 14-10-2018 IPR033436 MucB/RseB, C-terminal RY45_04480 82213038ac9c9d863ba31a1c822aa7f7 326 PIRSF PIRSF005427 1 323 1.6E-109 T 14-10-2018 IPR005588 MucB/RseB RY45_04480 82213038ac9c9d863ba31a1c822aa7f7 326 Gene3D G3DSA:3.30.200.100 220 321 2.1E-29 T 14-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily RY45_04480 82213038ac9c9d863ba31a1c822aa7f7 326 Pfam PF03888 MucB/RseB N-terminal domain 25 191 6.6E-49 T 14-10-2018 IPR033434 MucB/RseB, N-terminal RY45_04480 82213038ac9c9d863ba31a1c822aa7f7 326 Gene3D G3DSA:2.50.20.10 24 208 2.8E-43 T 14-10-2018 RY45_16575 78983e5b8ace290a5e3b598d031886b1 258 SUPERFAMILY SSF53850 32 255 3.06E-21 T 14-10-2018 RY45_16575 78983e5b8ace290a5e3b598d031886b1 258 Gene3D G3DSA:3.40.190.10 33 247 1.4E-9 T 14-10-2018 RY45_16575 78983e5b8ace290a5e3b598d031886b1 258 Gene3D G3DSA:3.40.190.10 119 213 1.4E-9 T 14-10-2018 RY45_16675 a67dec22a43d9842d380c1fb7157cec0 216 SUPERFAMILY SSF56784 9 205 7.52E-39 T 14-10-2018 IPR036412 HAD-like superfamily RY45_16675 a67dec22a43d9842d380c1fb7157cec0 216 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 11 181 2.0E-17 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_16675 a67dec22a43d9842d380c1fb7157cec0 216 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 181 1.6E-18 T 14-10-2018 RY45_16675 a67dec22a43d9842d380c1fb7157cec0 216 Gene3D G3DSA:1.10.150.240 23 82 8.5E-49 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_16675 a67dec22a43d9842d380c1fb7157cec0 216 Gene3D G3DSA:3.40.50.1000 9 185 8.5E-49 T 14-10-2018 IPR023214 HAD superfamily RY45_08375 eaf4521f4d918454dcbc485a96c58960 221 Pfam PF00578 AhpC/TSA family 47 192 6.5E-26 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RY45_08375 eaf4521f4d918454dcbc485a96c58960 221 Gene3D G3DSA:3.40.30.10 38 211 3.1E-32 T 14-10-2018 RY45_08375 eaf4521f4d918454dcbc485a96c58960 221 SUPERFAMILY SSF52833 47 216 2.17E-30 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_15875 e65c1bcc28ed62e221efb013029d8b8e 231 SUPERFAMILY SSF52540 3 213 7.99E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_15875 e65c1bcc28ed62e221efb013029d8b8e 231 Pfam PF00005 ABC transporter 23 162 4.3E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_15875 e65c1bcc28ed62e221efb013029d8b8e 231 Gene3D G3DSA:3.40.50.300 1 230 1.2E-48 T 14-10-2018 RY45_15875 e65c1bcc28ed62e221efb013029d8b8e 231 SMART SM00382 27 217 3.5E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15875 e65c1bcc28ed62e221efb013029d8b8e 231 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_15200 f0b43cf0cf92cef3f283238fb16b0d76 109 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 12 107 3.0E-40 T 14-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 RY45_15200 f0b43cf0cf92cef3f283238fb16b0d76 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 19 92 5.2E-20 T 14-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 RY45_13865 48decf69393c475f6f7531fe07050e19 241 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 112 125 5.1E-31 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 RY45_13865 48decf69393c475f6f7531fe07050e19 241 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 92 107 5.1E-31 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 RY45_13865 48decf69393c475f6f7531fe07050e19 241 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 161 173 5.1E-31 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 RY45_13865 48decf69393c475f6f7531fe07050e19 241 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 72 85 5.1E-31 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 RY45_13865 48decf69393c475f6f7531fe07050e19 241 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 20 30 5.1E-31 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 RY45_13865 48decf69393c475f6f7531fe07050e19 241 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 5 188 2.5E-71 T 14-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 RY45_13865 48decf69393c475f6f7531fe07050e19 241 Gene3D G3DSA:3.30.70.1530 15 86 2.6E-27 T 14-10-2018 RY45_13865 48decf69393c475f6f7531fe07050e19 241 Pfam PF01514 Secretory protein of YscJ/FliF family 16 182 1.1E-26 T 14-10-2018 IPR006182 Secretory protein YscJ/FliF RY45_13865 48decf69393c475f6f7531fe07050e19 241 Gene3D G3DSA:3.30.300.30 88 195 2.9E-39 T 14-10-2018 RY45_12770 d8be4de8fc80d338aa5ae49c47fc78b1 351 Gene3D G3DSA:3.20.20.70 1 350 1.7E-166 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_12770 d8be4de8fc80d338aa5ae49c47fc78b1 351 SUPERFAMILY SSF51569 7 347 5.44E-140 T 14-10-2018 RY45_12770 d8be4de8fc80d338aa5ae49c47fc78b1 351 PIRSF PIRSF001361 1 351 4.6E-164 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RY45_12770 d8be4de8fc80d338aa5ae49c47fc78b1 351 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 348 1.2E-169 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RY45_12770 d8be4de8fc80d338aa5ae49c47fc78b1 351 Pfam PF00793 DAHP synthetase I family 39 338 1.1E-105 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 Gene3D G3DSA:3.40.50.300 4 266 5.0E-97 T 14-10-2018 RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 Gene3D G3DSA:1.10.486.10 377 540 6.4E-128 T 14-10-2018 RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 2.2E-75 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 667 0.0 T 14-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 Pfam PF13361 UvrD-like helicase C-terminal domain 271 614 3.3E-69 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 Gene3D G3DSA:3.40.50.300 274 633 6.4E-128 T 14-10-2018 RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 Gene3D G3DSA:1.10.10.160 108 181 5.0E-97 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 SUPERFAMILY SSF52540 1 640 5.33E-159 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_22000 37f15fbb116cef583dfd955acf134ec2 670 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 40.52 T 14-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 RY45_09090 5b2b7a36cb0cbd295f2015a73fb7e6bf 457 Pfam PF07603 Protein of unknown function (DUF1566) 284 410 2.7E-14 T 14-10-2018 IPR011460 Protein of unknown function DUF1566 RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 Pfam PF08497 Radical SAM N-terminal 23 373 3.8E-144 T 14-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 374 394 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 Pfam PF11842 Domain of unknown function (DUF3362) 588 725 1.1E-44 T 14-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 Pfam PF04055 Radical SAM superfamily 374 579 9.9E-22 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 Gene3D G3DSA:3.80.30.20 369 622 1.6E-15 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 SMART SM00729 370 617 8.5E-8 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 SUPERFAMILY SSF102114 354 608 5.2E-12 T 14-10-2018 RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 23 638 6.2E-262 T 14-10-2018 IPR022946 Uncharacterised protein family UPF0313 RY45_06905 40d78e01df5f075bf5edac3beef53ec6 805 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 23 640 49.779 T 14-10-2018 IPR022946 Uncharacterised protein family UPF0313 RY45_17485 cf8ac5d33c99afa251938a7b42798520 456 Gene3D G3DSA:3.40.50.12780 2 318 4.4E-23 T 14-10-2018 RY45_17485 cf8ac5d33c99afa251938a7b42798520 456 SUPERFAMILY SSF56801 3 453 8.77E-50 T 14-10-2018 RY45_17485 cf8ac5d33c99afa251938a7b42798520 456 Gene3D G3DSA:3.30.300.30 344 454 7.5E-12 T 14-10-2018 RY45_17485 cf8ac5d33c99afa251938a7b42798520 456 Pfam PF00501 AMP-binding enzyme 20 305 5.9E-12 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_17685 f20313c3263a4ced4b3a70b9517f8302 175 Pfam PF01618 MotA/TolQ/ExbB proton channel family 65 169 9.0E-22 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_04320 56f5b60c56a6534828938f7f78a6fe5b 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 111 6.3E-20 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_04320 56f5b60c56a6534828938f7f78a6fe5b 220 Gene3D G3DSA:1.10.3720.10 6 218 1.4E-48 T 14-10-2018 IPR035906 MetI-like superfamily RY45_04320 56f5b60c56a6534828938f7f78a6fe5b 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 201 1.5E-17 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_04320 56f5b60c56a6534828938f7f78a6fe5b 220 SUPERFAMILY SSF161098 15 208 7.74E-39 T 14-10-2018 IPR035906 MetI-like superfamily RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 SUPERFAMILY SSF53850 92 294 4.16E-26 T 14-10-2018 RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 Gene3D G3DSA:1.10.10.10 2 87 8.5E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.3E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.3E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.3E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.0E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 Gene3D G3DSA:3.40.190.10 162 265 2.8E-21 T 14-10-2018 RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 Pfam PF03466 LysR substrate binding domain 92 289 6.0E-24 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 SUPERFAMILY SSF46785 1 109 7.07E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_04765 50671631b7fc63c77cfeff62f890d72d 299 Gene3D G3DSA:3.40.190.10 92 276 2.8E-21 T 14-10-2018 RY45_16975 d08402ccb51bbe051c3f716711528c73 245 Pfam PF04397 LytTr DNA-binding domain 150 242 1.1E-20 T 14-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RY45_16975 d08402ccb51bbe051c3f716711528c73 245 SMART SM00850 149 243 1.4E-24 T 14-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RY45_16975 d08402ccb51bbe051c3f716711528c73 245 Gene3D G3DSA:2.40.50.1020 144 244 9.5E-11 T 14-10-2018 RY45_16975 d08402ccb51bbe051c3f716711528c73 245 Pfam PF00072 Response regulator receiver domain 5 112 1.6E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_16975 d08402ccb51bbe051c3f716711528c73 245 Gene3D G3DSA:3.40.50.2300 1 122 2.0E-28 T 14-10-2018 RY45_16975 d08402ccb51bbe051c3f716711528c73 245 SUPERFAMILY SSF52172 1 124 2.99E-30 T 14-10-2018 IPR011006 CheY-like superfamily RY45_16975 d08402ccb51bbe051c3f716711528c73 245 SMART SM00448 2 112 2.2E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_18215 ee6a4245d5a96fb7ba6cc495455dc989 260 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 3 249 5.5E-85 T 14-10-2018 IPR008275 CoA enzyme activase RY45_18215 ee6a4245d5a96fb7ba6cc495455dc989 260 SUPERFAMILY SSF53067 3 253 2.48E-31 T 14-10-2018 RY45_18215 ee6a4245d5a96fb7ba6cc495455dc989 260 Gene3D G3DSA:3.30.420.40 95 234 7.4E-69 T 14-10-2018 RY45_18215 ee6a4245d5a96fb7ba6cc495455dc989 260 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 251 2.1E-60 T 14-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 RY45_18215 ee6a4245d5a96fb7ba6cc495455dc989 260 Gene3D G3DSA:3.30.420.40 5 250 7.4E-69 T 14-10-2018 RY45_09710 126cfaf8b511d750fc36ef548f686d17 291 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 3 55 4.5E-18 T 14-10-2018 IPR025713 Motility protein B, N-terminal domain RY45_09710 126cfaf8b511d750fc36ef548f686d17 291 SUPERFAMILY SSF103088 159 276 5.89E-26 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_09710 126cfaf8b511d750fc36ef548f686d17 291 Gene3D G3DSA:3.30.1330.60 131 278 1.7E-40 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_09710 126cfaf8b511d750fc36ef548f686d17 291 Pfam PF00691 OmpA family 172 270 1.9E-10 T 14-10-2018 IPR006665 OmpA-like domain RY45_02330 c85876ef3f0ef99e12da3f1f2008999e 268 Gene3D G3DSA:3.60.110.10 1 267 1.3E-86 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RY45_02330 c85876ef3f0ef99e12da3f1f2008999e 268 SUPERFAMILY SSF56317 1 264 1.57E-78 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RY45_02330 c85876ef3f0ef99e12da3f1f2008999e 268 Pfam PF00795 Carbon-nitrogen hydrolase 35 255 5.8E-52 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RY45_02330 c85876ef3f0ef99e12da3f1f2008999e 268 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 150 170 - T 14-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site RY45_04610 33f779bc15e88a01fca7176a9a92eaa5 105 Pfam PF04977 Septum formation initiator 11 89 1.3E-21 T 14-10-2018 IPR007060 Septum formation initiator FtsL/DivIC RY45_04610 33f779bc15e88a01fca7176a9a92eaa5 105 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 33.078 T 14-10-2018 IPR023081 Cell division protein FtsB RY45_13940 01cf2ff44cc8e3006643dab0769bc1da 347 Pfam PF04888 Secretion system effector C (SseC) like family 257 342 1.1E-10 T 14-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 RY45_13940 01cf2ff44cc8e3006643dab0769bc1da 347 Pfam PF04888 Secretion system effector C (SseC) like family 105 254 3.0E-24 T 14-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1329 1366 1.2 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1215 1253 1.0E-4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 250 287 0.0032 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1847 1879 2.0 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1083 1116 2.5 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1296 1324 1.1 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1682 1712 0.0023 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 421 452 0.95 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1923 1962 1.3E-4 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1034 1064 0.11 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1354 1380 0.12 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1754 1788 0.23 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 763 800 1.3E-5 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1888 1923 0.041 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1253 1291 0.017 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 5 24 0.48 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1769 1793 0.47 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1501 1539 0.3 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 975 1007 0.069 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1734 1769 0.015 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1716 1748 0.0082 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 231 269 1.5 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05965 0210990737ff5408268141385a3f7c32 1977 SUPERFAMILY SSF51126 1325 1696 4.71E-7 T 14-10-2018 IPR011050 Pectin lyase fold/virulence factor RY45_21430 6b1911e2bc72e46996828fc4f32a0443 189 Pfam PF04545 Sigma-70, region 4 136 182 2.4E-13 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RY45_21430 6b1911e2bc72e46996828fc4f32a0443 189 Gene3D G3DSA:1.10.1740.10 7 91 2.2E-25 T 14-10-2018 RY45_21430 6b1911e2bc72e46996828fc4f32a0443 189 SUPERFAMILY SSF88659 131 186 1.36E-13 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_21430 6b1911e2bc72e46996828fc4f32a0443 189 Gene3D G3DSA:1.10.10.10 94 186 3.7E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21430 6b1911e2bc72e46996828fc4f32a0443 189 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 183 2.1E-27 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RY45_21430 6b1911e2bc72e46996828fc4f32a0443 189 SUPERFAMILY SSF88946 10 108 1.02E-22 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RY45_21430 6b1911e2bc72e46996828fc4f32a0443 189 Pfam PF04542 Sigma-70 region 2 27 94 1.3E-16 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RY45_10555 d88200a38ec7475c8c0b55a0d76ff367 204 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 151 187 5.6E-5 T 14-10-2018 IPR010177 Doubled CXXCH motif RY45_10555 d88200a38ec7475c8c0b55a0d76ff367 204 SUPERFAMILY SSF48695 6 193 1.92E-26 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_10555 d88200a38ec7475c8c0b55a0d76ff367 204 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 45 187 2.2E-59 T 14-10-2018 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 RY45_10555 d88200a38ec7475c8c0b55a0d76ff367 204 Gene3D G3DSA:1.10.1130.10 106 190 6.4E-7 T 14-10-2018 RY45_10555 d88200a38ec7475c8c0b55a0d76ff367 204 Pfam PF13435 Cytochrome c554 and c-prime 52 91 0.008 T 14-10-2018 IPR023155 Cytochrome c-552/4 RY45_20650 abdc041c5c9a1b9b11ff8e0ac6928319 494 Pfam PF01547 Bacterial extracellular solute-binding protein 32 318 4.7E-33 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein RY45_20650 abdc041c5c9a1b9b11ff8e0ac6928319 494 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 128 145 - T 14-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 RY45_20650 abdc041c5c9a1b9b11ff8e0ac6928319 494 Gene3D G3DSA:3.40.190.10 129 395 1.0E-59 T 14-10-2018 RY45_20650 abdc041c5c9a1b9b11ff8e0ac6928319 494 SUPERFAMILY SSF53850 21 404 8.89E-64 T 14-10-2018 RY45_20650 abdc041c5c9a1b9b11ff8e0ac6928319 494 Gene3D G3DSA:3.40.190.10 39 339 1.0E-59 T 14-10-2018 RY45_17410 ff0ad8b18a5d6254c156421defe780d7 256 Pfam PF06738 Putative threonine/serine exporter 11 248 1.6E-67 T 14-10-2018 IPR010619 Putative threonine/serine exporter RY45_20205 c2cbaf1a42243033e704cde35f68e302 427 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 206 424 2.4E-46 T 14-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 RY45_20205 c2cbaf1a42243033e704cde35f68e302 427 Pfam PF07196 Flagellin hook IN motif 118 174 2.0E-8 T 14-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 RY45_20205 c2cbaf1a42243033e704cde35f68e302 427 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 3 98 1.0E-17 T 14-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 Pfam PF04539 Sigma-70 region 3 98 139 5.2E-7 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 SUPERFAMILY SSF88659 89 154 3.18E-12 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 SUPERFAMILY SSF88946 15 88 1.1E-23 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 Pfam PF04545 Sigma-70, region 4 185 232 1.2E-18 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 237 63.637 T 14-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 Gene3D G3DSA:1.10.1740.10 2 85 3.0E-28 T 14-10-2018 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 SUPERFAMILY SSF88659 164 237 7.1E-20 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 204 230 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 Gene3D G3DSA:1.20.140.160 87 236 6.0E-42 T 14-10-2018 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 234 5.1E-81 T 14-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 PRINTS PR00046 Major sigma-70 factor signature 219 230 1.8E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 PRINTS PR00046 Major sigma-70 factor signature 204 219 1.8E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 PRINTS PR00046 Major sigma-70 factor signature 43 56 1.8E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 PRINTS PR00046 Major sigma-70 factor signature 187 199 1.8E-12 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 234 1.1E-30 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 PIRSF PIRSF000770 3 238 1.3E-33 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RY45_07280 bbdab400a21d602b0d95f65d5ba83880 239 Pfam PF04542 Sigma-70 region 2 16 88 1.3E-17 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RY45_10495 d98dd108d1830f5275ae4992ab58bfb0 644 SUPERFAMILY SSF51338 27 642 1.45E-19 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_10495 d98dd108d1830f5275ae4992ab58bfb0 644 Pfam PF07969 Amidohydrolase family 83 641 1.8E-61 T 14-10-2018 IPR013108 Amidohydrolase 3 RY45_10495 d98dd108d1830f5275ae4992ab58bfb0 644 Gene3D G3DSA:2.30.40.10 40 613 5.0E-96 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_10495 d98dd108d1830f5275ae4992ab58bfb0 644 Gene3D G3DSA:3.10.310.70 110 251 5.0E-96 T 14-10-2018 RY45_10495 d98dd108d1830f5275ae4992ab58bfb0 644 Gene3D G3DSA:3.20.20.140 93 596 5.0E-96 T 14-10-2018 RY45_10495 d98dd108d1830f5275ae4992ab58bfb0 644 SUPERFAMILY SSF51556 92 597 2.21E-21 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_19925 7ff2f3cad7635fda11926ed475627015 123 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 113 1.1E-25 T 14-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RY45_19925 7ff2f3cad7635fda11926ed475627015 123 SUPERFAMILY SSF55620 1 116 8.34E-34 T 14-10-2018 RY45_19925 7ff2f3cad7635fda11926ed475627015 123 Gene3D G3DSA:3.30.1130.10 1 117 4.4E-39 T 14-10-2018 RY45_19925 7ff2f3cad7635fda11926ed475627015 123 SMART SM00905 4 114 2.0E-45 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RY45_19925 7ff2f3cad7635fda11926ed475627015 123 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 3.7E-32 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RY45_19925 7ff2f3cad7635fda11926ed475627015 123 Pfam PF02152 Dihydroneopterin aldolase 4 112 3.7E-29 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 SMART SM00448 2 115 6.1E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 SUPERFAMILY SSF46894 135 210 9.52E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 203 1.4E-19 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 SMART SM00421 146 203 5.0E-17 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 Pfam PF00072 Response regulator receiver domain 4 116 4.7E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 Gene3D G3DSA:3.40.50.12740 2 209 9.9E-62 T 14-10-2018 RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 SUPERFAMILY SSF52172 2 132 7.54E-36 T 14-10-2018 IPR011006 CheY-like superfamily RY45_14570 dbd8722a5188414968fc437a5f8d95b1 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_20235 0bdd04160723c1c8f70ff11ccb5c0588 439 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 2 438 3.1E-97 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_20235 0bdd04160723c1c8f70ff11ccb5c0588 439 Pfam PF00460 Flagella basal body rod protein 4 33 1.3E-6 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_20235 0bdd04160723c1c8f70ff11ccb5c0588 439 SUPERFAMILY SSF64518 161 439 5.49E-25 T 14-10-2018 RY45_20235 0bdd04160723c1c8f70ff11ccb5c0588 439 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 1.5E-18 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_20235 0bdd04160723c1c8f70ff11ccb5c0588 439 PRINTS PR01005 Flagellar hook-associated protein signature 120 140 1.5E-18 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_20235 0bdd04160723c1c8f70ff11ccb5c0588 439 PRINTS PR01005 Flagellar hook-associated protein signature 153 177 1.5E-18 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_20235 0bdd04160723c1c8f70ff11ccb5c0588 439 PRINTS PR01005 Flagellar hook-associated protein signature 211 229 1.5E-18 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RY45_20235 0bdd04160723c1c8f70ff11ccb5c0588 439 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 376 438 5.3E-10 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_11810 f00ed6af9a4ee66ca2c13ba64c3b10f1 122 Gene3D G3DSA:1.20.120.910 1 119 1.3E-13 T 14-10-2018 RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 Gene3D G3DSA:3.10.350.10 102 169 3.0E-13 T 14-10-2018 IPR036779 LysM domain superfamily RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 Gene3D G3DSA:3.10.350.10 56 99 8.1E-15 T 14-10-2018 IPR036779 LysM domain superfamily RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 SUPERFAMILY SSF54106 57 100 5.49E-10 T 14-10-2018 RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 SUPERFAMILY SSF51261 116 343 4.18E-46 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 SMART SM00257 115 159 1.1E-11 T 14-10-2018 IPR018392 LysM domain RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 SMART SM00257 57 101 2.4E-12 T 14-10-2018 IPR018392 LysM domain RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 Pfam PF01551 Peptidase family M23 245 339 1.2E-28 T 14-10-2018 IPR016047 Peptidase M23 RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 Gene3D G3DSA:2.70.70.10 208 343 3.0E-34 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 Pfam PF01476 LysM domain 58 100 3.5E-13 T 14-10-2018 IPR018392 LysM domain RY45_04645 d38f502a53fd1c0b8ce0e30a2f4cd9ac 346 Pfam PF01476 LysM domain 116 158 2.8E-12 T 14-10-2018 IPR018392 LysM domain RY45_09300 4b743b9a3508380cd77884ef8d4417ce 140 PIRSF PIRSF039090 1 133 7.1E-47 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RY45_09300 4b743b9a3508380cd77884ef8d4417ce 140 Gene3D G3DSA:1.20.120.340 1 127 3.4E-33 T 14-10-2018 RY45_09300 4b743b9a3508380cd77884ef8d4417ce 140 TIGRFAM TIGR00208 fliS: flagellar protein FliS 3 122 4.2E-20 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RY45_09300 4b743b9a3508380cd77884ef8d4417ce 140 Pfam PF02561 Flagellar protein FliS 8 122 1.3E-29 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RY45_09300 4b743b9a3508380cd77884ef8d4417ce 140 SUPERFAMILY SSF101116 8 126 4.97E-32 T 14-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 RY45_13410 8e3c2451f2bcb4586c6147e658927fa8 266 SUPERFAMILY SSF58100 13 261 1.65E-12 T 14-10-2018 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 Pfam PF01197 Ribosomal protein L31 1 65 1.6E-29 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 Gene3D G3DSA:2.30.170.50 1 70 1.3E-31 T 14-10-2018 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 9.4E-22 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 9.4E-22 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 9.4E-22 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 30.056 T 14-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 SUPERFAMILY SSF143800 1 67 7.85E-28 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_21785 3c3d33c4d4a5a818f15711f67218ff73 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 4.2E-33 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_05005 c24e895c96f974196a3158953b3acaa8 145 SUPERFAMILY SSF54197 1 134 2.84E-32 T 14-10-2018 IPR036265 HIT-like superfamily RY45_05005 c24e895c96f974196a3158953b3acaa8 145 Gene3D G3DSA:3.30.428.10 1 142 2.8E-40 T 14-10-2018 IPR036265 HIT-like superfamily RY45_05005 c24e895c96f974196a3158953b3acaa8 145 Pfam PF01230 HIT domain 9 97 2.4E-15 T 14-10-2018 IPR001310 Histidine triad (HIT) protein RY45_05005 c24e895c96f974196a3158953b3acaa8 145 PIRSF PIRSF000714 1 138 1.0E-51 T 14-10-2018 IPR026026 Histidine triad hydrolase, Hint-type RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 259 4.1E-26 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 360 44.688 T 14-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 Pfam PF11890 Domain of unknown function (DUF3410) 292 360 7.2E-23 T 14-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 10 277 2.5E-16 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 Gene3D G3DSA:3.40.50.720 93 260 9.0E-104 T 14-10-2018 RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 SUPERFAMILY SSF51735 93 260 4.2E-29 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 SUPERFAMILY SSF52283 4 110 2.55E-20 T 14-10-2018 RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 Gene3D G3DSA:3.30.1370.170 296 375 6.4E-24 T 14-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 RY45_14090 a3943e0aaefc47b275b9910eabbe8917 376 Gene3D G3DSA:3.40.50.720 1 280 9.0E-104 T 14-10-2018 RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 Gene3D G3DSA:3.10.580.10 47 195 7.8E-54 T 14-10-2018 RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 SUPERFAMILY SSF56176 204 288 1.74E-22 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 Gene3D G3DSA:3.30.465.10 196 282 2.3E-29 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 Pfam PF03471 Transporter associated domain 207 282 1.1E-20 T 14-10-2018 IPR005170 Transporter-associated domain RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 SMART SM01091 206 284 5.6E-28 T 14-10-2018 IPR005170 Transporter-associated domain RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 SUPERFAMILY SSF54631 62 201 2.15E-34 T 14-10-2018 RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 Pfam PF00571 CBS domain 65 119 1.5E-7 T 14-10-2018 IPR000644 CBS domain RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 Pfam PF00571 CBS domain 139 188 3.4E-6 T 14-10-2018 IPR000644 CBS domain RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 SMART SM00116 74 123 2.2 T 14-10-2018 IPR000644 CBS domain RY45_16725 c1af61e1c834bda3e1f86204fca5872d 294 SMART SM00116 140 188 0.028 T 14-10-2018 IPR000644 CBS domain RY45_17500 fc77713eaa96de875fbd9d2ccb76cfdc 88 Gene3D G3DSA:1.10.1200.10 4 87 4.7E-19 T 14-10-2018 IPR036736 ACP-like superfamily RY45_17500 fc77713eaa96de875fbd9d2ccb76cfdc 88 SUPERFAMILY SSF47336 3 83 2.49E-11 T 14-10-2018 IPR036736 ACP-like superfamily RY45_17500 fc77713eaa96de875fbd9d2ccb76cfdc 88 Pfam PF00550 Phosphopantetheine attachment site 9 63 1.3E-7 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain RY45_09020 99c67bdb28b96363f837f20a169de56a 300 Gene3D G3DSA:3.40.190.10 164 266 2.8E-60 T 14-10-2018 RY45_09020 99c67bdb28b96363f837f20a169de56a 300 Gene3D G3DSA:1.10.10.10 1 86 1.1E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_09020 99c67bdb28b96363f837f20a169de56a 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 7.6E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_09020 99c67bdb28b96363f837f20a169de56a 300 SUPERFAMILY SSF46785 6 113 3.25E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_09020 99c67bdb28b96363f837f20a169de56a 300 SUPERFAMILY SSF53850 90 298 3.26E-39 T 14-10-2018 RY45_09020 99c67bdb28b96363f837f20a169de56a 300 Pfam PF03466 LysR substrate binding domain 89 295 3.4E-39 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_09020 99c67bdb28b96363f837f20a169de56a 300 Gene3D G3DSA:3.40.190.10 93 293 2.8E-60 T 14-10-2018 RY45_22335 101ad5f11233e59fb7e7cdc59fcb41d1 95 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 7 82 9.0E-8 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RY45_22335 101ad5f11233e59fb7e7cdc59fcb41d1 95 SUPERFAMILY SSF143011 1 83 5.1E-16 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily RY45_22335 101ad5f11233e59fb7e7cdc59fcb41d1 95 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 7 85 1.4E-11 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RY45_22335 101ad5f11233e59fb7e7cdc59fcb41d1 95 Gene3D G3DSA:3.30.2310.20 1 95 5.6E-24 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 Pfam PF00437 Type II/IV secretion system protein 195 456 4.3E-77 T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 SUPERFAMILY SSF160246 2 146 1.15E-39 T 14-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 43 149 8.3E-26 T 14-10-2018 IPR007831 General secretory system II, protein E, N-terminal RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 Gene3D G3DSA:3.30.300.160 65 146 4.9E-9 T 14-10-2018 RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 SMART SM00382 317 438 0.0015 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 384 398 - T 14-10-2018 IPR001482 Type II/IV secretion system protein RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 Gene3D G3DSA:3.30.450.90 155 289 4.4E-42 T 14-10-2018 RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 SUPERFAMILY SSF52540 179 563 4.3E-93 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02245 ce25bc2b3c5c07d47ff92f69159138ac 569 Gene3D G3DSA:3.40.50.300 291 568 9.3E-100 T 14-10-2018 RY45_05575 e598ee00cb150f613bfdc5b1bd238f73 453 Pfam PF01136 Peptidase family U32 75 343 1.3E-96 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RY45_05575 e598ee00cb150f613bfdc5b1bd238f73 453 Pfam PF16325 Peptidase family U32 C-terminal domain 358 438 1.2E-21 T 14-10-2018 IPR032525 Peptidase family U32, C-terminal RY45_05575 e598ee00cb150f613bfdc5b1bd238f73 453 Gene3D G3DSA:2.40.30.10 354 439 3.6E-11 T 14-10-2018 RY45_05575 e598ee00cb150f613bfdc5b1bd238f73 453 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RY45_03925 51cbb30153c6d037609d50b99b69752d 177 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03925 51cbb30153c6d037609d50b99b69752d 177 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 30 1.0E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03925 51cbb30153c6d037609d50b99b69752d 177 SUPERFAMILY SSF54523 11 87 1.26E-13 T 14-10-2018 RY45_03925 51cbb30153c6d037609d50b99b69752d 177 Pfam PF12019 Type II transport protein GspH 46 161 1.0E-5 T 14-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 RY45_03925 51cbb30153c6d037609d50b99b69752d 177 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 1.9E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03925 51cbb30153c6d037609d50b99b69752d 177 Gene3D G3DSA:3.30.700.10 11 173 6.2E-11 T 14-10-2018 RY45_10995 560a6543b391fd983d32ce74e16ce56b 151 Gene3D G3DSA:3.40.630.30 14 149 8.2E-21 T 14-10-2018 RY45_10995 560a6543b391fd983d32ce74e16ce56b 151 SUPERFAMILY SSF55729 27 139 9.81E-23 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_10995 560a6543b391fd983d32ce74e16ce56b 151 Pfam PF00583 Acetyltransferase (GNAT) family 36 130 6.7E-13 T 14-10-2018 IPR000182 GNAT domain RY45_10730 f99e171285cf19393fe795458485840e 824 Gene3D G3DSA:3.40.50.2000 479 803 2.4E-136 T 14-10-2018 RY45_10730 f99e171285cf19393fe795458485840e 824 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 662 674 - T 14-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RY45_10730 f99e171285cf19393fe795458485840e 824 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 818 0.0 T 14-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RY45_10730 f99e171285cf19393fe795458485840e 824 Gene3D G3DSA:3.40.50.2000 2 478 1.0E-196 T 14-10-2018 RY45_10730 f99e171285cf19393fe795458485840e 824 PIRSF PIRSF000460 1 824 6.7E-222 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RY45_10730 f99e171285cf19393fe795458485840e 824 Pfam PF00343 Carbohydrate phosphorylase 104 818 0.0 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RY45_10730 f99e171285cf19393fe795458485840e 824 SUPERFAMILY SSF53756 11 822 0.0 T 14-10-2018 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 Gene3D G3DSA:1.10.1740.60 198 282 7.9E-39 T 14-10-2018 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 Gene3D G3DSA:2.60.40.1730 18 197 6.3E-69 T 14-10-2018 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 Gene3D G3DSA:1.10.390.10 284 446 2.3E-64 T 14-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily RY45_11415 21fec47b952011e6446a325e026f4ff9 874 Pfam PF01433 Peptidase family M1 domain 211 442 1.1E-58 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 Gene3D G3DSA:1.25.50.10 549 873 2.0E-110 T 14-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily RY45_11415 21fec47b952011e6446a325e026f4ff9 874 SUPERFAMILY SSF55486 207 453 9.71E-74 T 14-10-2018 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 129 144 2.7E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 179 194 2.7E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 316 328 2.7E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 297 312 2.7E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 261 271 2.7E-9 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 Gene3D G3DSA:2.60.40.1840 447 548 1.3E-33 T 14-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily RY45_11415 21fec47b952011e6446a325e026f4ff9 874 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 15 872 0.0 T 14-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 RY45_11415 21fec47b952011e6446a325e026f4ff9 874 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 551 873 2.7E-111 T 14-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RY45_11415 21fec47b952011e6446a325e026f4ff9 874 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 448 548 2.5E-32 T 14-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold RY45_11415 21fec47b952011e6446a325e026f4ff9 874 SUPERFAMILY SSF63737 9 196 2.48E-46 T 14-10-2018 RY45_13170 78fe3b5e8f8900600c1a8e82bf76b99d 200 SUPERFAMILY SSF51182 106 196 1.01E-15 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_13170 78fe3b5e8f8900600c1a8e82bf76b99d 200 Pfam PF07883 Cupin domain 125 193 1.7E-11 T 14-10-2018 IPR013096 Cupin 2, conserved barrel RY45_13170 78fe3b5e8f8900600c1a8e82bf76b99d 200 Pfam PF01381 Helix-turn-helix 26 79 3.4E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_13170 78fe3b5e8f8900600c1a8e82bf76b99d 200 Gene3D G3DSA:2.60.120.10 110 199 4.2E-16 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_13170 78fe3b5e8f8900600c1a8e82bf76b99d 200 SMART SM00530 25 80 5.3E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RY45_13170 78fe3b5e8f8900600c1a8e82bf76b99d 200 Gene3D G3DSA:1.10.260.40 18 85 3.9E-17 T 14-10-2018 RY45_13170 78fe3b5e8f8900600c1a8e82bf76b99d 200 SUPERFAMILY SSF47413 21 83 1.26E-15 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_13430 74989ed30504797daea82ef5d05275c5 602 SUPERFAMILY SSF55486 30 587 1.28E-81 T 14-10-2018 RY45_13430 74989ed30504797daea82ef5d05275c5 602 Pfam PF01432 Peptidase family M3 200 583 8.6E-22 T 14-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 RY45_13430 74989ed30504797daea82ef5d05275c5 602 Pfam PF08439 Oligopeptidase F 119 183 6.9E-6 T 14-10-2018 IPR013647 Oligopeptidase F, N-terminal domain RY45_13430 74989ed30504797daea82ef5d05275c5 602 Gene3D G3DSA:1.10.1370.30 35 601 1.1E-101 T 14-10-2018 RY45_10505 5a9fa0ef7746b027c251919211deceaf 417 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 47.763 T 14-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 RY45_10505 5a9fa0ef7746b027c251919211deceaf 417 SUPERFAMILY SSF54373 270 360 2.49E-18 T 14-10-2018 RY45_10505 5a9fa0ef7746b027c251919211deceaf 417 Pfam PF01266 FAD dependent oxidoreductase 2 398 8.9E-76 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RY45_10505 5a9fa0ef7746b027c251919211deceaf 417 Gene3D G3DSA:3.50.50.60 1 75 3.0E-15 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10505 5a9fa0ef7746b027c251919211deceaf 417 SUPERFAMILY SSF51905 1 416 1.07E-53 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10505 5a9fa0ef7746b027c251919211deceaf 417 Gene3D G3DSA:3.30.9.10 134 359 9.0E-53 T 14-10-2018 RY45_10505 5a9fa0ef7746b027c251919211deceaf 417 Gene3D G3DSA:3.50.50.60 98 399 9.0E-53 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_05220 824b6984ecfc91da67b653478642102a 432 Gene3D G3DSA:1.10.4030.30 29 281 5.8E-78 T 14-10-2018 RY45_05220 824b6984ecfc91da67b653478642102a 432 Pfam PF00639 PPIC-type PPIASE domain 181 273 4.9E-20 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 RY45_05220 824b6984ecfc91da67b653478642102a 432 Pfam PF00639 PPIC-type PPIASE domain 291 383 4.0E-25 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 RY45_05220 824b6984ecfc91da67b653478642102a 432 Hamap MF_01183 Chaperone SurA [surA]. 4 430 33.934 T 14-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 RY45_05220 824b6984ecfc91da67b653478642102a 432 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 323 344 - T 14-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 RY45_05220 824b6984ecfc91da67b653478642102a 432 Gene3D G3DSA:3.10.50.40 175 277 5.8E-78 T 14-10-2018 RY45_05220 824b6984ecfc91da67b653478642102a 432 SUPERFAMILY SSF109998 29 205 2.85E-41 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily RY45_05220 824b6984ecfc91da67b653478642102a 432 Gene3D G3DSA:3.10.50.40 282 422 3.5E-42 T 14-10-2018 RY45_05220 824b6984ecfc91da67b653478642102a 432 SUPERFAMILY SSF54534 283 386 1.57E-32 T 14-10-2018 RY45_05220 824b6984ecfc91da67b653478642102a 432 Pfam PF09312 SurA N-terminal domain 28 145 1.9E-39 T 14-10-2018 IPR015391 SurA N-terminal RY45_05220 824b6984ecfc91da67b653478642102a 432 SUPERFAMILY SSF54534 176 277 1.31E-26 T 14-10-2018 RY45_00745 b976b075c9bf0140504cc8e5d1f2b6cf 89 SUPERFAMILY SSF101744 1 67 2.77E-16 T 14-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 RY45_00745 b976b075c9bf0140504cc8e5d1f2b6cf 89 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 6 67 4.1E-9 T 14-10-2018 IPR009778 Modulator of Rho-dependent transcription termination RY45_00745 b976b075c9bf0140504cc8e5d1f2b6cf 89 Gene3D G3DSA:2.30.30.400 7 76 9.9E-8 T 14-10-2018 IPR038626 Rof-like superfamily RY45_06750 b3316f2aa5bdd6b2185933c147f3f096 364 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 172 358 3.6E-23 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_06750 b3316f2aa5bdd6b2185933c147f3f096 364 Gene3D G3DSA:1.10.3720.10 146 362 1.7E-45 T 14-10-2018 IPR035906 MetI-like superfamily RY45_06750 b3316f2aa5bdd6b2185933c147f3f096 364 SUPERFAMILY SSF161098 153 344 8.5E-38 T 14-10-2018 IPR035906 MetI-like superfamily RY45_06750 b3316f2aa5bdd6b2185933c147f3f096 364 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 154 250 8.9E-22 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_02080 aa4c39d945395784858da6367660ec9d 81 Pfam PF10678 Protein of unknown function (DUF2492) 3 79 3.0E-36 T 14-10-2018 IPR019620 Putative metal-binding protein RY45_02080 aa4c39d945395784858da6367660ec9d 81 TIGRFAM TIGR03853 matur_matur: putative metal-binding protein 4 80 7.0E-36 T 14-10-2018 IPR019620 Putative metal-binding protein RY45_01590 955d5752a8ca374c63d2455d4b0e9a34 185 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 20 55 1.9E-15 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RY45_01590 955d5752a8ca374c63d2455d4b0e9a34 185 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 68 103 4.9E-14 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RY45_01590 955d5752a8ca374c63d2455d4b0e9a34 185 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 109 147 2.1E-14 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RY45_01590 955d5752a8ca374c63d2455d4b0e9a34 185 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 152 166 0.48 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RY45_01590 955d5752a8ca374c63d2455d4b0e9a34 185 Gene3D G3DSA:3.30.65.10 59 105 2.5E-6 T 14-10-2018 RY45_01590 955d5752a8ca374c63d2455d4b0e9a34 185 Gene3D G3DSA:3.30.65.10 10 58 3.0E-10 T 14-10-2018 RY45_01590 955d5752a8ca374c63d2455d4b0e9a34 185 SUPERFAMILY SSF57783 65 105 3.06E-11 T 14-10-2018 RY45_01590 955d5752a8ca374c63d2455d4b0e9a34 185 SUPERFAMILY SSF57783 16 54 8.5E-13 T 14-10-2018 RY45_14800 ef75ffbb5c85e854a08f57d0d7421ff4 262 SUPERFAMILY SSF117143 92 223 2.62E-35 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RY45_14800 ef75ffbb5c85e854a08f57d0d7421ff4 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 8.5E-110 T 14-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 RY45_14800 ef75ffbb5c85e854a08f57d0d7421ff4 262 Pfam PF00460 Flagella basal body rod protein 5 35 9.0E-12 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_14800 ef75ffbb5c85e854a08f57d0d7421ff4 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 260 4.1E-24 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14800 ef75ffbb5c85e854a08f57d0d7421ff4 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RY45_14800 ef75ffbb5c85e854a08f57d0d7421ff4 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 137 2.2E-43 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RY45_14800 ef75ffbb5c85e854a08f57d0d7421ff4 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 147 244 6.9E-30 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 Gene3D G3DSA:3.40.50.12740 3 212 9.4E-45 T 14-10-2018 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 SMART SM00448 3 120 1.4E-14 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 SMART SM00421 149 206 1.0E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 SUPERFAMILY SSF46894 142 211 5.44E-17 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 SUPERFAMILY SSF52172 2 135 4.84E-22 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 3.1E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 3.1E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 3.1E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 Pfam PF00072 Response regulator receiver domain 5 120 1.1E-20 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05600 1a935898d5c75b53ed58cee2dc46e789 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 1.7E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_19505 b17f7e2c32ecff69862078570b8b301c 226 Pfam PF01865 Protein of unknown function DUF47 7 224 4.5E-66 T 14-10-2018 IPR018445 Putative phosphate transport regulator RY45_19505 b17f7e2c32ecff69862078570b8b301c 226 Gene3D G3DSA:1.20.58.220 1 226 2.3E-64 T 14-10-2018 IPR038078 PhoU-like domain superfamily RY45_19505 b17f7e2c32ecff69862078570b8b301c 226 SUPERFAMILY SSF109755 29 209 7.32E-16 T 14-10-2018 RY45_19505 b17f7e2c32ecff69862078570b8b301c 226 TIGRFAM TIGR00153 TIGR00153: TIGR00153 family protein 5 226 1.1E-67 T 14-10-2018 IPR002727 Protein of unknown function DUF47 RY45_13315 0811f172761fe2647a3c93a719fb7657 118 Gene3D G3DSA:3.90.1150.30 1 117 7.6E-42 T 14-10-2018 IPR038056 YjbR-like superfamily RY45_13315 0811f172761fe2647a3c93a719fb7657 118 Pfam PF04237 YjbR 11 101 2.1E-27 T 14-10-2018 IPR007351 Uncharacterised protein YjbR RY45_13315 0811f172761fe2647a3c93a719fb7657 118 SUPERFAMILY SSF142906 1 115 7.85E-38 T 14-10-2018 IPR038056 YjbR-like superfamily RY45_07010 62851ef20a720117785f8a9ca836b1d2 318 SUPERFAMILY SSF53335 47 301 1.36E-29 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_07010 62851ef20a720117785f8a9ca836b1d2 318 Gene3D G3DSA:3.40.50.150 41 302 3.4E-77 T 14-10-2018 RY45_07010 62851ef20a720117785f8a9ca836b1d2 318 Pfam PF05971 Protein of unknown function (DUF890) 7 302 7.1E-129 T 14-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 RY45_07010 62851ef20a720117785f8a9ca836b1d2 318 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 8 304 55.597 T 14-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 RY45_07010 62851ef20a720117785f8a9ca836b1d2 318 PIRSF PIRSF029038 1 314 3.8E-144 T 14-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 RY45_11550 b2b1e0884f966657dc0290bfc79cf485 850 Pfam PF02470 MlaD protein 40 131 8.0E-13 T 14-10-2018 IPR003399 Mce/MlaD RY45_11550 b2b1e0884f966657dc0290bfc79cf485 850 Pfam PF02470 MlaD protein 724 781 4.2E-7 T 14-10-2018 IPR003399 Mce/MlaD RY45_11550 b2b1e0884f966657dc0290bfc79cf485 850 Pfam PF02470 MlaD protein 615 684 2.7E-9 T 14-10-2018 IPR003399 Mce/MlaD RY45_11550 b2b1e0884f966657dc0290bfc79cf485 850 Pfam PF02470 MlaD protein 380 436 3.2E-7 T 14-10-2018 IPR003399 Mce/MlaD RY45_20125 6a116119314a9cb90f5b900bdd678f26 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 360 7.7E-152 T 14-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20125 6a116119314a9cb90f5b900bdd678f26 360 Pfam PF00953 Glycosyl transferase family 4 99 283 2.5E-34 T 14-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 RY45_20125 6a116119314a9cb90f5b900bdd678f26 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.197 T 14-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20125 6a116119314a9cb90f5b900bdd678f26 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20125 6a116119314a9cb90f5b900bdd678f26 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 9.9E-5 T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_20125 6a116119314a9cb90f5b900bdd678f26 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_01830 0d7e542684baddc9b4a21c44a0bd8745 304 SUPERFAMILY SSF103481 191 291 2.75E-9 T 14-10-2018 RY45_01830 0d7e542684baddc9b4a21c44a0bd8745 304 Pfam PF00892 EamA-like transporter family 157 286 3.4E-11 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_01830 0d7e542684baddc9b4a21c44a0bd8745 304 Pfam PF00892 EamA-like transporter family 8 143 6.1E-16 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_01830 0d7e542684baddc9b4a21c44a0bd8745 304 SUPERFAMILY SSF103481 67 146 2.88E-11 T 14-10-2018 RY45_02975 fe4edb4b9a0730cb7acd07de1a11a7a4 383 Gene3D G3DSA:3.40.50.1970 1 180 4.8E-44 T 14-10-2018 RY45_02975 fe4edb4b9a0730cb7acd07de1a11a7a4 383 SUPERFAMILY SSF56796 3 380 2.22E-100 T 14-10-2018 RY45_02975 fe4edb4b9a0730cb7acd07de1a11a7a4 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 356 8.6E-86 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RY45_02975 fe4edb4b9a0730cb7acd07de1a11a7a4 383 Gene3D G3DSA:1.20.1090.10 181 383 6.9E-42 T 14-10-2018 RY45_09330 f20cedddfc9301d166753112922e7278 252 Gene3D G3DSA:3.40.190.10 113 212 8.6E-11 T 14-10-2018 RY45_09330 f20cedddfc9301d166753112922e7278 252 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 251 6.5E-11 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_09330 f20cedddfc9301d166753112922e7278 252 SUPERFAMILY SSF53850 20 251 7.97E-22 T 14-10-2018 RY45_09330 f20cedddfc9301d166753112922e7278 252 Gene3D G3DSA:3.40.190.10 33 251 8.6E-11 T 14-10-2018 RY45_01130 63be2e6a825981edcb39acf1eb932c2f 347 Gene3D G3DSA:3.40.50.2000 1 148 7.0E-23 T 14-10-2018 RY45_01130 63be2e6a825981edcb39acf1eb932c2f 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 68 307 1.4E-16 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 RY45_01130 63be2e6a825981edcb39acf1eb932c2f 347 SUPERFAMILY SSF53756 2 338 7.46E-65 T 14-10-2018 RY45_01130 63be2e6a825981edcb39acf1eb932c2f 347 Gene3D G3DSA:3.40.50.2000 165 339 1.1E-22 T 14-10-2018 RY45_03090 3137b8167c214b85ed937f672fc9c303 256 Pfam PF12697 Alpha/beta hydrolase family 10 240 2.2E-14 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_03090 3137b8167c214b85ed937f672fc9c303 256 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 7 245 7.6E-77 T 14-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 RY45_03090 3137b8167c214b85ed937f672fc9c303 256 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 2 247 30.753 T 14-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 RY45_03090 3137b8167c214b85ed937f672fc9c303 256 Gene3D G3DSA:3.40.50.1820 2 245 4.9E-56 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_03090 3137b8167c214b85ed937f672fc9c303 256 SUPERFAMILY SSF53474 5 248 6.3E-41 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_14100 6fce8d70134d3564500443e9640d5b0b 276 Gene3D G3DSA:3.40.190.10 47 262 2.4E-81 T 14-10-2018 RY45_14100 6fce8d70134d3564500443e9640d5b0b 276 Gene3D G3DSA:3.40.190.10 112 220 2.4E-81 T 14-10-2018 RY45_14100 6fce8d70134d3564500443e9640d5b0b 276 Pfam PF03180 NLPA lipoprotein 33 266 5.0E-74 T 14-10-2018 IPR004872 Lipoprotein NlpA family RY45_14100 6fce8d70134d3564500443e9640d5b0b 276 SUPERFAMILY SSF53850 32 266 2.53E-64 T 14-10-2018 RY45_16720 3c64b666c90b106e3a8c8d018e734c5e 154 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 147 24.43 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RY45_16720 3c64b666c90b106e3a8c8d018e734c5e 154 Pfam PF02130 Uncharacterized protein family UPF0054 35 143 1.5E-37 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RY45_16720 3c64b666c90b106e3a8c8d018e734c5e 154 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 113 123 - T 14-10-2018 IPR020549 Endoribonuclease YbeY, conserved site RY45_16720 3c64b666c90b106e3a8c8d018e734c5e 154 SUPERFAMILY SSF55486 23 149 5.86E-48 T 14-10-2018 RY45_16720 3c64b666c90b106e3a8c8d018e734c5e 154 Gene3D G3DSA:3.40.390.30 1 154 9.5E-59 T 14-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 RY45_16720 3c64b666c90b106e3a8c8d018e734c5e 154 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 39 144 9.3E-37 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RY45_04640 5a00920f09525357390ec5b302f5b493 193 Pfam PF09335 SNARE associated Golgi protein 38 158 1.4E-12 T 14-10-2018 IPR032816 SNARE associated Golgi protein RY45_17710 e064f0aace1c3b38ecde13c58efdae9f 714 SUPERFAMILY SSF56219 315 686 4.8E-31 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RY45_17710 e064f0aace1c3b38ecde13c58efdae9f 714 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 693 712 0.0014 T 14-10-2018 IPR020008 GlyGly-CTERM domain RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 Pfam PF00375 Sodium:dicarboxylate symporter family 6 400 2.5E-111 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 SUPERFAMILY SSF118215 6 402 6.67E-113 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 PRINTS PR00173 Glutamate-aspartate symporter signature 49 69 3.7E-39 T 14-10-2018 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 PRINTS PR00173 Glutamate-aspartate symporter signature 293 319 3.7E-39 T 14-10-2018 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 PRINTS PR00173 Glutamate-aspartate symporter signature 355 375 3.7E-39 T 14-10-2018 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 PRINTS PR00173 Glutamate-aspartate symporter signature 79 104 3.7E-39 T 14-10-2018 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 PRINTS PR00173 Glutamate-aspartate symporter signature 328 347 3.7E-39 T 14-10-2018 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 3.7E-39 T 14-10-2018 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 3.7E-39 T 14-10-2018 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 3.7E-39 T 14-10-2018 RY45_13520 a1209e3ce4f705a654b1fc028db6ba53 419 Gene3D G3DSA:1.10.3860.10 1 414 1.4E-117 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_11770 d99fd709d45d908b268e9fee2f6467a7 140 Pfam PF00571 CBS domain 73 127 4.7E-12 T 14-10-2018 IPR000644 CBS domain RY45_11770 d99fd709d45d908b268e9fee2f6467a7 140 Pfam PF00571 CBS domain 6 60 1.7E-6 T 14-10-2018 IPR000644 CBS domain RY45_11770 d99fd709d45d908b268e9fee2f6467a7 140 SUPERFAMILY SSF54631 1 126 3.16E-30 T 14-10-2018 RY45_11770 d99fd709d45d908b268e9fee2f6467a7 140 SMART SM00116 80 127 0.0084 T 14-10-2018 IPR000644 CBS domain RY45_11770 d99fd709d45d908b268e9fee2f6467a7 140 SMART SM00116 13 61 2.5 T 14-10-2018 IPR000644 CBS domain RY45_11770 d99fd709d45d908b268e9fee2f6467a7 140 Gene3D G3DSA:3.10.580.10 1 128 2.7E-28 T 14-10-2018 RY45_09890 0ecd8442da00b49b5b5dacd6f1eff460 187 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 180 6.0E-20 T 14-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_09890 0ecd8442da00b49b5b5dacd6f1eff460 187 Pfam PF01923 Cobalamin adenosyltransferase 3 168 1.0E-52 T 14-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_09890 0ecd8442da00b49b5b5dacd6f1eff460 187 SUPERFAMILY SSF89028 1 181 3.53E-54 T 14-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_09890 0ecd8442da00b49b5b5dacd6f1eff460 187 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 180 2.7E-50 T 14-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_09890 0ecd8442da00b49b5b5dacd6f1eff460 187 Gene3D G3DSA:1.20.1200.10 12 186 2.7E-53 T 14-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_12015 431baf64245442e295386906cd7e577a 310 Pfam PF00696 Amino acid kinase family 3 282 1.9E-29 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_12015 431baf64245442e295386906cd7e577a 310 PIRSF PIRSF000723 1 310 3.3E-117 T 14-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RY45_12015 431baf64245442e295386906cd7e577a 310 SUPERFAMILY SSF53633 3 308 6.02E-78 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_12015 431baf64245442e295386906cd7e577a 310 Gene3D G3DSA:3.40.1160.10 1 309 4.4E-116 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_12015 431baf64245442e295386906cd7e577a 310 PRINTS PR01469 Bacterial carbamate kinase signature 209 224 5.2E-63 T 14-10-2018 RY45_12015 431baf64245442e295386906cd7e577a 310 PRINTS PR01469 Bacterial carbamate kinase signature 108 127 5.2E-63 T 14-10-2018 RY45_12015 431baf64245442e295386906cd7e577a 310 PRINTS PR01469 Bacterial carbamate kinase signature 179 197 5.2E-63 T 14-10-2018 RY45_12015 431baf64245442e295386906cd7e577a 310 PRINTS PR01469 Bacterial carbamate kinase signature 73 91 5.2E-63 T 14-10-2018 RY45_12015 431baf64245442e295386906cd7e577a 310 PRINTS PR01469 Bacterial carbamate kinase signature 264 279 5.2E-63 T 14-10-2018 RY45_12015 431baf64245442e295386906cd7e577a 310 PRINTS PR01469 Bacterial carbamate kinase signature 156 175 5.2E-63 T 14-10-2018 RY45_12015 431baf64245442e295386906cd7e577a 310 PRINTS PR01469 Bacterial carbamate kinase signature 39 58 5.2E-63 T 14-10-2018 RY45_12015 431baf64245442e295386906cd7e577a 310 TIGRFAM TIGR00746 arcC: carbamate kinase 4 309 3.8E-109 T 14-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RY45_12825 8b0c8cf4bbdd5e905c33e2374165b6a6 338 Pfam PF01032 FecCD transport family 15 327 1.3E-79 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RY45_12825 8b0c8cf4bbdd5e905c33e2374165b6a6 338 SUPERFAMILY SSF81345 3 326 2.88E-65 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_12825 8b0c8cf4bbdd5e905c33e2374165b6a6 338 Gene3D G3DSA:1.10.3470.10 2 331 9.7E-77 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_19270 c052649ec73afefc359e036cb812d6b3 193 Gene3D G3DSA:1.20.1590.10 2 193 4.8E-66 T 14-10-2018 IPR023381 YP001051499.1-like domain superfamily RY45_19270 c052649ec73afefc359e036cb812d6b3 193 Pfam PF04222 Protein of unknown function (DUF416) 6 190 2.7E-68 T 14-10-2018 IPR007338 Protein of unknown function DUF416 RY45_02300 82b18b1d3b5a012a30792993c12bf470 301 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 282 4.6E-84 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RY45_02300 82b18b1d3b5a012a30792993c12bf470 301 Pfam PF04085 rod shape-determining protein MreC 125 269 1.5E-38 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RY45_02300 82b18b1d3b5a012a30792993c12bf470 301 PIRSF PIRSF038471 2 283 1.3E-79 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RY45_02300 82b18b1d3b5a012a30792993c12bf470 301 Gene3D G3DSA:2.40.10.350 180 257 4.5E-35 T 14-10-2018 RY45_02300 82b18b1d3b5a012a30792993c12bf470 301 Gene3D G3DSA:2.40.10.340 121 266 4.5E-35 T 14-10-2018 RY45_06825 52d6888cac4763656bb85f39b0f5939b 379 SUPERFAMILY SSF55073 205 361 6.83E-47 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_06825 52d6888cac4763656bb85f39b0f5939b 379 SMART SM00267 189 363 1.9E-59 T 14-10-2018 IPR000160 GGDEF domain RY45_06825 52d6888cac4763656bb85f39b0f5939b 379 Gene3D G3DSA:3.30.70.270 191 362 4.1E-54 T 14-10-2018 RY45_06825 52d6888cac4763656bb85f39b0f5939b 379 Pfam PF00990 Diguanylate cyclase, GGDEF domain 201 358 3.8E-44 T 14-10-2018 IPR000160 GGDEF domain RY45_06825 52d6888cac4763656bb85f39b0f5939b 379 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 198 361 5.9E-45 T 14-10-2018 IPR000160 GGDEF domain RY45_15190 76f8407e208d3dd73f479ad7630785a2 453 Pfam PF07690 Major Facilitator Superfamily 20 350 9.1E-42 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_15190 76f8407e208d3dd73f479ad7630785a2 453 SUPERFAMILY SSF103473 6 390 8.5E-64 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_15190 76f8407e208d3dd73f479ad7630785a2 453 Gene3D G3DSA:1.20.1250.20 3 389 4.9E-97 T 14-10-2018 RY45_15190 76f8407e208d3dd73f479ad7630785a2 453 Gene3D G3DSA:3.30.70.100 390 453 2.0E-23 T 14-10-2018 RY45_16785 cd36f5bbb9a83ff0715270371d6cedd3 332 SUPERFAMILY SSF53955 23 312 6.75E-80 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_16785 cd36f5bbb9a83ff0715270371d6cedd3 332 Gene3D G3DSA:1.10.530.10 59 307 3.3E-106 T 14-10-2018 RY45_16785 cd36f5bbb9a83ff0715270371d6cedd3 332 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 26 310 6.3E-110 T 14-10-2018 IPR011757 Lytic transglycosylase MltB RY45_16785 cd36f5bbb9a83ff0715270371d6cedd3 332 Gene3D G3DSA:1.10.8.350 26 192 3.3E-106 T 14-10-2018 RY45_16785 cd36f5bbb9a83ff0715270371d6cedd3 332 Pfam PF13406 Transglycosylase SLT domain 24 308 1.2E-91 T 14-10-2018 IPR031304 Transglycosylase SLT domain 2 RY45_21730 afe21cea5fc5b784a53bf1e773de1ccb 254 SUPERFAMILY SSF110710 2 244 2.48E-50 T 14-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like RY45_21730 afe21cea5fc5b784a53bf1e773de1ccb 254 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 21 237 1.3E-40 T 14-10-2018 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 619 1.3E-295 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 14-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 SMART SM00861 319 483 1.7E-67 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 Pfam PF02779 Transketolase, pyrimidine binding domain 319 479 9.6E-40 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 15 282 9.7E-118 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 Gene3D G3DSA:3.40.50.920 495 621 1.2E-42 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 SUPERFAMILY SSF52518 317 504 1.68E-58 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 SUPERFAMILY SSF52518 16 381 5.53E-76 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 620 46.203 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 Pfam PF02780 Transketolase, C-terminal domain 495 611 4.3E-26 T 14-10-2018 IPR033248 Transketolase, C-terminal domain RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 Gene3D G3DSA:3.40.50.970 317 491 2.4E-67 T 14-10-2018 RY45_17125 b1e1d52e1b69227b29b3a70e9f7d15cb 621 SUPERFAMILY SSF52922 492 620 3.27E-30 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RY45_19530 0592cf3f18debca74516dafba0be26e2 145 ProSitePatterns PS00380 Rhodanese signature 1. 54 65 - T 14-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 RY45_19530 0592cf3f18debca74516dafba0be26e2 145 SUPERFAMILY SSF52821 22 131 5.37E-24 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_19530 0592cf3f18debca74516dafba0be26e2 145 Pfam PF00581 Rhodanese-like domain 33 122 5.9E-12 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_19530 0592cf3f18debca74516dafba0be26e2 145 SMART SM00450 29 126 1.9E-9 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_19530 0592cf3f18debca74516dafba0be26e2 145 Gene3D G3DSA:3.40.250.10 10 128 2.9E-27 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_14035 2c7dd5797f5af3f263ee5bfc4034c072 128 Gene3D G3DSA:3.30.1460.10 1 119 4.9E-8 T 14-10-2018 RY45_03500 ecd201f3a4ab3a22bacb03eb6b1e8c21 615 Gene3D G3DSA:3.40.390.10 276 375 5.8E-21 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RY45_03500 ecd201f3a4ab3a22bacb03eb6b1e8c21 615 Gene3D G3DSA:1.10.1370.10 376 539 5.8E-21 T 14-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RY45_03500 ecd201f3a4ab3a22bacb03eb6b1e8c21 615 Pfam PF01432 Peptidase family M3 138 543 3.4E-21 T 14-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 RY45_03500 ecd201f3a4ab3a22bacb03eb6b1e8c21 615 Gene3D G3DSA:1.10.1370.10 120 229 6.1E-7 T 14-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RY45_03500 ecd201f3a4ab3a22bacb03eb6b1e8c21 615 SUPERFAMILY SSF55486 6 544 9.16E-70 T 14-10-2018 RY45_00710 129b5c2a614bd4544f8138861a5e0198 147 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 129 18.584 T 14-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RY45_00710 129b5c2a614bd4544f8138861a5e0198 147 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 7.2E-28 T 14-10-2018 RY45_00710 129b5c2a614bd4544f8138861a5e0198 147 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 7.2E-28 T 14-10-2018 RY45_00710 129b5c2a614bd4544f8138861a5e0198 147 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 7.2E-28 T 14-10-2018 RY45_00710 129b5c2a614bd4544f8138861a5e0198 147 Pfam PF02416 mttA/Hcf106 family 4 49 6.2E-7 T 14-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RY45_00710 129b5c2a614bd4544f8138861a5e0198 147 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 8.3E-32 T 14-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 Gene3D G3DSA:3.40.50.720 1 166 1.4E-56 T 14-10-2018 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 Pfam PF02056 Family 4 glycosyl hydrolase 6 183 1.1E-63 T 14-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 SUPERFAMILY SSF51735 3 164 4.17E-52 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 138 155 2.6E-58 T 14-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 74 90 2.6E-58 T 14-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 2.6E-58 T 14-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 2.6E-58 T 14-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 164 175 2.6E-58 T 14-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 95 108 2.6E-58 T 14-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 109 129 2.6E-58 T 14-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 SUPERFAMILY SSF56327 168 438 1.06E-89 T 14-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 Gene3D G3DSA:3.90.110.10 167 439 1.7E-100 T 14-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 414 5.8E-51 T 14-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 RY45_00850 866b512ad2ea5aa1765d58195a35cb8b 439 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 138 169 - T 14-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 RY45_05370 d97c6e6e35a3195cb38fd00f95b7b313 379 SUPERFAMILY SSF103473 4 366 1.57E-31 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_05370 d97c6e6e35a3195cb38fd00f95b7b313 379 Pfam PF12832 MFS_1 like family 10 357 2.2E-40 T 14-10-2018 IPR024989 Major facilitator superfamily associated domain RY45_05370 d97c6e6e35a3195cb38fd00f95b7b313 379 Gene3D G3DSA:1.20.1250.20 1 188 7.2E-16 T 14-10-2018 RY45_05370 d97c6e6e35a3195cb38fd00f95b7b313 379 Gene3D G3DSA:1.20.1250.20 190 375 1.8E-31 T 14-10-2018 RY45_05370 d97c6e6e35a3195cb38fd00f95b7b313 379 PIRSF PIRSF004925 1 377 2.2E-101 T 14-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 SUPERFAMILY SSF52540 254 492 7.61E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 SMART SM00382 288 483 0.19 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 SMART SM00382 38 233 1.4E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 SUPERFAMILY SSF52540 12 234 2.19E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 Pfam PF00005 ABC transporter 280 434 7.4E-18 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 Pfam PF00005 ABC transporter 29 178 1.1E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 Gene3D G3DSA:3.40.50.300 248 501 7.8E-39 T 14-10-2018 RY45_21375 a8c4e3551ce7390817e3211da69eafbf 506 Gene3D G3DSA:3.40.50.300 1 246 2.9E-57 T 14-10-2018 RY45_19755 c2cd781877f22307280f417a3701fffa 152 Gene3D G3DSA:3.30.70.920 56 139 3.7E-18 T 14-10-2018 RY45_19755 c2cd781877f22307280f417a3701fffa 152 Pfam PF01037 Lrp/AsnC ligand binding domain 68 142 1.2E-17 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RY45_19755 c2cd781877f22307280f417a3701fffa 152 Pfam PF13404 AsnC-type helix-turn-helix domain 3 43 2.6E-15 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_19755 c2cd781877f22307280f417a3701fffa 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 1.0E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_19755 c2cd781877f22307280f417a3701fffa 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 1.0E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_19755 c2cd781877f22307280f417a3701fffa 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 1.0E-11 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_19755 c2cd781877f22307280f417a3701fffa 152 SUPERFAMILY SSF46785 3 62 5.91E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_19755 c2cd781877f22307280f417a3701fffa 152 SUPERFAMILY SSF54909 62 147 8.71E-17 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_19755 c2cd781877f22307280f417a3701fffa 152 Gene3D G3DSA:1.10.10.10 2 54 8.6E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19755 c2cd781877f22307280f417a3701fffa 152 SMART SM00344 2 111 9.3E-34 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RY45_20385 20423985037ce373c0c9b2aca10de8c4 196 Pfam PF13580 SIS domain 8 143 5.3E-30 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_20385 20423985037ce373c0c9b2aca10de8c4 196 Gene3D G3DSA:3.40.50.10490 1 196 3.2E-61 T 14-10-2018 RY45_20385 20423985037ce373c0c9b2aca10de8c4 196 SUPERFAMILY SSF53697 1 191 2.02E-46 T 14-10-2018 RY45_06595 b46e977373de1a86830798917f1fbbe7 130 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 64 121 5.8E-7 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 RY45_06595 b46e977373de1a86830798917f1fbbe7 130 Gene3D G3DSA:3.30.2420.10 59 124 3.0E-6 T 14-10-2018 RY45_06595 b46e977373de1a86830798917f1fbbe7 130 SUPERFAMILY SSF74653 61 122 2.94E-7 T 14-10-2018 RY45_17200 45d0ca1a73e6af1613342d768410f433 417 SUPERFAMILY SSF53383 6 416 2.34E-184 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_17200 45d0ca1a73e6af1613342d768410f433 417 PIRSF PIRSF000412 1 417 1.2E-170 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RY45_17200 45d0ca1a73e6af1613342d768410f433 417 Pfam PF00464 Serine hydroxymethyltransferase 10 386 8.6E-184 T 14-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RY45_17200 45d0ca1a73e6af1613342d768410f433 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 14-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RY45_17200 45d0ca1a73e6af1613342d768410f433 417 Gene3D G3DSA:3.90.1150.10 11 395 1.4E-186 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_17200 45d0ca1a73e6af1613342d768410f433 417 Gene3D G3DSA:3.40.640.10 37 289 1.4E-186 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_17200 45d0ca1a73e6af1613342d768410f433 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 53.665 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 Gene3D G3DSA:1.20.81.30 265 374 2.8E-26 T 14-10-2018 RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 377 391 3.0E-18 T 14-10-2018 IPR003004 GspF/PilC family RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 393 412 3.0E-18 T 14-10-2018 IPR003004 GspF/PilC family RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 173 201 3.0E-18 T 14-10-2018 IPR003004 GspF/PilC family RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 74 86 3.0E-18 T 14-10-2018 IPR003004 GspF/PilC family RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 173 201 - T 14-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 Gene3D G3DSA:1.20.81.30 67 180 2.1E-29 T 14-10-2018 RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 Pfam PF00482 Type II secretion system (T2SS), protein F 79 201 4.3E-33 T 14-10-2018 IPR018076 Type II secretion system F domain RY45_20040 5dff60c579d3bdb83d52f0d8d95d272d 413 Pfam PF00482 Type II secretion system (T2SS), protein F 282 404 3.4E-27 T 14-10-2018 IPR018076 Type II secretion system F domain RY45_10575 8f54e3b4f1ac624bc6ac4850c64fa829 426 Gene3D G3DSA:3.50.50.60 266 326 7.6E-6 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10575 8f54e3b4f1ac624bc6ac4850c64fa829 426 SUPERFAMILY SSF51905 1 423 1.64E-29 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10575 8f54e3b4f1ac624bc6ac4850c64fa829 426 Gene3D G3DSA:3.50.50.60 1 88 9.7E-10 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_10575 8f54e3b4f1ac624bc6ac4850c64fa829 426 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 422 3.9E-171 T 14-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RY45_10575 8f54e3b4f1ac624bc6ac4850c64fa829 426 PRINTS PR00757 Flavin-containing amine oxidase signature 4 23 5.9E-5 T 14-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 RY45_10575 8f54e3b4f1ac624bc6ac4850c64fa829 426 PRINTS PR00757 Flavin-containing amine oxidase signature 192 214 5.9E-5 T 14-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 RY45_10575 8f54e3b4f1ac624bc6ac4850c64fa829 426 Pfam PF00890 FAD binding domain 4 409 2.3E-47 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10575 8f54e3b4f1ac624bc6ac4850c64fa829 426 PIRSF PIRSF000141 1 426 5.2E-130 T 14-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RY45_20475 90916030d9a69bd9204de6e5a942e9da 379 Gene3D G3DSA:2.30.40.10 5 364 1.5E-117 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_20475 90916030d9a69bd9204de6e5a942e9da 379 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 2 366 6.1E-174 T 14-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 RY45_20475 90916030d9a69bd9204de6e5a942e9da 379 SUPERFAMILY SSF51556 53 318 1.08E-68 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_20475 90916030d9a69bd9204de6e5a942e9da 379 Gene3D G3DSA:3.20.20.140 53 318 1.5E-117 T 14-10-2018 RY45_20475 90916030d9a69bd9204de6e5a942e9da 379 PIRSF PIRSF039004 1 378 3.7E-137 T 14-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 RY45_20475 90916030d9a69bd9204de6e5a942e9da 379 Pfam PF01979 Amidohydrolase family 77 340 4.7E-8 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_20475 90916030d9a69bd9204de6e5a942e9da 379 SUPERFAMILY SSF51338 1 366 1.3E-17 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_16880 1562ec6f3a16efdb595dedd1a521f6b6 238 SUPERFAMILY SSF52833 103 227 2.24E-11 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_16880 1562ec6f3a16efdb595dedd1a521f6b6 238 Gene3D G3DSA:3.40.30.10 80 228 2.8E-17 T 14-10-2018 RY45_16880 1562ec6f3a16efdb595dedd1a521f6b6 238 Pfam PF13098 Thioredoxin-like domain 108 224 4.8E-8 T 14-10-2018 IPR012336 Thioredoxin-like fold RY45_16880 1562ec6f3a16efdb595dedd1a521f6b6 238 SUPERFAMILY SSF54423 24 77 6.87E-10 T 14-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 RY45_16880 1562ec6f3a16efdb595dedd1a521f6b6 238 Pfam PF10411 Disulfide bond isomerase protein N-terminus 26 75 4.1E-12 T 14-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal RY45_16880 1562ec6f3a16efdb595dedd1a521f6b6 238 Gene3D G3DSA:3.10.450.70 19 79 2.5E-10 T 14-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 RY45_06385 66d6b1e01c882f55dafffe33410d20a7 444 Pfam PF13520 Amino acid permease 9 422 3.5E-33 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_06385 66d6b1e01c882f55dafffe33410d20a7 444 PIRSF PIRSF006060 1 444 1.6E-47 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_06385 66d6b1e01c882f55dafffe33410d20a7 444 Gene3D G3DSA:1.20.1740.10 4 441 1.4E-57 T 14-10-2018 RY45_14850 45105d548dc38cc6933280ac0e5cab64 137 Pfam PF05130 FlgN protein 2 127 4.4E-18 T 14-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 RY45_14850 45105d548dc38cc6933280ac0e5cab64 137 SUPERFAMILY SSF140566 2 109 6.8E-17 T 14-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 RY45_14850 45105d548dc38cc6933280ac0e5cab64 137 Gene3D G3DSA:1.20.58.300 2 110 3.7E-5 T 14-10-2018 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 5.8E-57 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 54 80 5.8E-57 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 25 41 5.8E-57 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 134 157 5.8E-57 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 268 288 5.8E-57 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 215 240 5.8E-57 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 PRINTS PR00954 Flagellar motor switch protein FliG signature 292 318 5.8E-57 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 Pfam PF14842 FliG N-terminal domain 24 124 2.1E-28 T 14-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 Pfam PF14841 FliG middle domain 136 206 3.7E-27 T 14-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 SUPERFAMILY SSF48029 24 136 1.83E-21 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 Pfam PF01706 FliG C-terminal domain 238 344 1.3E-40 T 14-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 PIRSF PIRSF003161 19 353 8.2E-116 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 21 351 8.0E-98 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 Gene3D G3DSA:1.10.220.30 109 213 7.9E-30 T 14-10-2018 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 Gene3D G3DSA:1.10.220.30 20 104 5.0E-17 T 14-10-2018 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 Gene3D G3DSA:1.10.220.30 215 353 1.1E-42 T 14-10-2018 RY45_07200 ff3330faa2f9dd5fa67b342a9f278606 353 SUPERFAMILY SSF48029 134 344 7.32E-69 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 Pfam PF13458 Periplasmic binding protein 29 366 4.0E-66 T 14-10-2018 IPR028081 Leucine-binding protein domain RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 92 102 1.8E-47 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 52 68 1.8E-47 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 281 294 1.8E-47 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 258 276 1.8E-47 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 71 89 1.8E-47 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 1.8E-47 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 30 46 1.8E-47 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 Gene3D G3DSA:3.40.50.2300 31 347 2.5E-119 T 14-10-2018 RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 SUPERFAMILY SSF53822 28 370 2.88E-94 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_00840 6ab00570920e31f08bbd55848a6eecd0 373 Gene3D G3DSA:3.40.50.2300 148 276 2.5E-119 T 14-10-2018 RY45_01120 8af7f9f2ae346ff78dcbad4591df935b 293 Pfam PF04393 Protein of unknown function (DUF535) 11 283 2.6E-81 T 14-10-2018 IPR007488 Protein of unknown function DUF535 RY45_02675 eb8565f05d30bc2f595fd964b13b9347 217 Pfam PF02230 Phospholipase/Carboxylesterase 9 213 6.9E-40 T 14-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 RY45_02675 eb8565f05d30bc2f595fd964b13b9347 217 Gene3D G3DSA:3.40.50.1820 1 215 5.0E-58 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_02675 eb8565f05d30bc2f595fd964b13b9347 217 SUPERFAMILY SSF53474 6 215 3.81E-45 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_09490 4461a91679c638744fa1564be4472ca7 122 SMART SM00450 18 119 5.5E-15 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_09490 4461a91679c638744fa1564be4472ca7 122 Gene3D G3DSA:3.40.250.10 4 122 5.5E-29 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_09490 4461a91679c638744fa1564be4472ca7 122 Pfam PF00581 Rhodanese-like domain 25 115 4.5E-14 T 14-10-2018 IPR001763 Rhodanese-like domain RY45_09490 4461a91679c638744fa1564be4472ca7 122 SUPERFAMILY SSF52821 4 122 5.89E-34 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily RY45_08015 d38b2906d45003103c33f7ad8a6f1c7a 176 Pfam PF07509 Protein of unknown function (DUF1523) 6 168 5.1E-56 T 14-10-2018 IPR011088 Bacteriophage phiNM3, A0EWY4 RY45_06945 aaede5cfe98dcf06984416d765565687 249 Pfam PF01464 Transglycosylase SLT domain 121 221 2.6E-27 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_06945 aaede5cfe98dcf06984416d765565687 249 SUPERFAMILY SSF53955 104 242 7.95E-45 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_06945 aaede5cfe98dcf06984416d765565687 249 Gene3D G3DSA:1.10.530.10 107 243 2.4E-43 T 14-10-2018 RY45_01710 af809a745f524d502cd98b3e776846ee 688 Pfam PF13502 AsmA-like C-terminal region 436 621 1.2E-11 T 14-10-2018 IPR032712 AsmA-like, C-terminal RY45_05840 3c39a09fe8371c38494e643a9aa6a171 199 Gene3D G3DSA:1.10.150.240 16 80 2.9E-39 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_05840 3c39a09fe8371c38494e643a9aa6a171 199 Gene3D G3DSA:3.40.50.1000 4 178 2.9E-39 T 14-10-2018 IPR023214 HAD superfamily RY45_05840 3c39a09fe8371c38494e643a9aa6a171 199 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 63 177 7.1E-16 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_05840 3c39a09fe8371c38494e643a9aa6a171 199 Pfam PF13419 Haloacid dehalogenase-like hydrolase 81 176 2.7E-9 T 14-10-2018 RY45_05840 3c39a09fe8371c38494e643a9aa6a171 199 SUPERFAMILY SSF56784 2 191 4.13E-35 T 14-10-2018 IPR036412 HAD-like superfamily RY45_08600 fdd724c9c5e98e9d6a4549c89f918347 535 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 26 535 1.1E-253 T 14-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RY45_08600 fdd724c9c5e98e9d6a4549c89f918347 535 Gene3D G3DSA:3.20.20.360 5 414 8.3E-193 T 14-10-2018 RY45_08600 fdd724c9c5e98e9d6a4549c89f918347 535 PIRSF PIRSF001363 5 535 7.5E-251 T 14-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RY45_08600 fdd724c9c5e98e9d6a4549c89f918347 535 Gene3D G3DSA:1.20.1220.12 415 535 1.8E-48 T 14-10-2018 RY45_08600 fdd724c9c5e98e9d6a4549c89f918347 535 SUPERFAMILY SSF51645 9 534 3.4E-193 T 14-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RY45_08600 fdd724c9c5e98e9d6a4549c89f918347 535 Pfam PF01274 Malate synthase 15 535 1.5E-207 T 14-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RY45_05700 fe8564b6b22055afc10a9951ca2c8510 619 Pfam PF01136 Peptidase family U32 84 311 7.4E-67 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RY45_05700 fe8564b6b22055afc10a9951ca2c8510 619 Pfam PF12392 Collagenase 390 505 1.0E-22 T 14-10-2018 IPR020988 Peptidase U32, collagenase RY45_05700 fe8564b6b22055afc10a9951ca2c8510 619 ProSitePatterns PS01276 Peptidase family U32 signature. 167 185 - T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RY45_04985 7ffad02d939ea8a5b02094e0ffa387dc 367 SUPERFAMILY SSF56104 14 345 4.9E-66 T 14-10-2018 RY45_04985 7ffad02d939ea8a5b02094e0ffa387dc 367 Pfam PF01259 SAICAR synthetase 22 295 2.0E-46 T 14-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_04985 7ffad02d939ea8a5b02094e0ffa387dc 367 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 19 342 20.764 T 14-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RY45_04985 7ffad02d939ea8a5b02094e0ffa387dc 367 Gene3D G3DSA:3.30.200.20 10 128 2.9E-18 T 14-10-2018 RY45_04985 7ffad02d939ea8a5b02094e0ffa387dc 367 TIGRFAM TIGR02735 purC_vibrio: phosphoribosylaminoimidazole-succinocarboxamide synthase 2 366 2.8E-205 T 14-10-2018 IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 RY45_04985 7ffad02d939ea8a5b02094e0ffa387dc 367 Gene3D G3DSA:3.30.470.20 129 284 2.6E-34 T 14-10-2018 RY45_02995 ac13771cac2b8cc6ecb5ff6ee1261cc3 131 Gene3D G3DSA:3.10.129.10 2 129 3.4E-33 T 14-10-2018 RY45_02995 ac13771cac2b8cc6ecb5ff6ee1261cc3 131 SUPERFAMILY SSF54637 3 129 4.39E-34 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_02995 ac13771cac2b8cc6ecb5ff6ee1261cc3 131 Pfam PF13279 Thioesterase-like superfamily 9 117 3.5E-10 T 14-10-2018 RY45_11825 05785ab245e4a1466b4c01a86ec9178b 563 SUPERFAMILY SSF56801 22 559 1.16E-149 T 14-10-2018 RY45_11825 05785ab245e4a1466b4c01a86ec9178b 563 Pfam PF00501 AMP-binding enzyme 34 466 9.4E-108 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_11825 05785ab245e4a1466b4c01a86ec9178b 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 475 549 7.7E-20 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_11825 05785ab245e4a1466b4c01a86ec9178b 563 ProSitePatterns PS00455 Putative AMP-binding domain signature. 216 227 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_11825 05785ab245e4a1466b4c01a86ec9178b 563 Gene3D G3DSA:3.40.50.12780 18 462 3.3E-115 T 14-10-2018 RY45_11825 05785ab245e4a1466b4c01a86ec9178b 563 Gene3D G3DSA:3.30.300.310 463 562 3.6E-32 T 14-10-2018 RY45_12805 85d8ddf8a277aae825979b129e62adc2 156 Pfam PF11143 Protein of unknown function (DUF2919) 4 149 1.0E-46 T 14-10-2018 IPR021318 Protein of unknown function DUF2919 RY45_06645 08a80428dca29e6be4c8de282d587a62 299 SUPERFAMILY SSF103481 189 289 1.31E-15 T 14-10-2018 RY45_06645 08a80428dca29e6be4c8de282d587a62 299 SUPERFAMILY SSF103481 39 140 1.16E-15 T 14-10-2018 RY45_06645 08a80428dca29e6be4c8de282d587a62 299 Pfam PF00892 EamA-like transporter family 155 284 1.5E-18 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_06645 08a80428dca29e6be4c8de282d587a62 299 Pfam PF00892 EamA-like transporter family 8 139 1.6E-27 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_15045 aef2abcb0980cbbb56eb72149dc995fa 471 SUPERFAMILY SSF56954 2 458 3.01E-115 T 14-10-2018 RY45_15045 aef2abcb0980cbbb56eb72149dc995fa 471 Gene3D G3DSA:2.20.200.10 93 345 1.3E-141 T 14-10-2018 RY45_15045 aef2abcb0980cbbb56eb72149dc995fa 471 Gene3D G3DSA:1.20.1600.10 47 455 1.3E-141 T 14-10-2018 RY45_15045 aef2abcb0980cbbb56eb72149dc995fa 471 Pfam PF02321 Outer membrane efflux protein 273 454 9.5E-32 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_15045 aef2abcb0980cbbb56eb72149dc995fa 471 Pfam PF02321 Outer membrane efflux protein 56 246 4.7E-26 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_15045 aef2abcb0980cbbb56eb72149dc995fa 471 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 455 2.5E-127 T 14-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 RY45_21475 1305c443e0bf59d0f118c3035ca0f89c 105 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 4 104 1.5E-34 T 14-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RY45_21475 1305c443e0bf59d0f118c3035ca0f89c 105 Gene3D G3DSA:2.102.10.10 1 105 1.0E-33 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RY45_21475 1305c443e0bf59d0f118c3035ca0f89c 105 SUPERFAMILY SSF50022 3 105 5.1E-36 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RY45_21475 1305c443e0bf59d0f118c3035ca0f89c 105 Pfam PF13806 Rieske-like [2Fe-2S] domain 4 104 7.3E-39 T 14-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RY45_02250 31df9c9b6eeed4f8aa50b085d4236887 406 Gene3D G3DSA:1.20.81.30 55 175 6.8E-28 T 14-10-2018 RY45_02250 31df9c9b6eeed4f8aa50b085d4236887 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 368 382 6.4E-9 T 14-10-2018 IPR003004 GspF/PilC family RY45_02250 31df9c9b6eeed4f8aa50b085d4236887 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 384 403 6.4E-9 T 14-10-2018 IPR003004 GspF/PilC family RY45_02250 31df9c9b6eeed4f8aa50b085d4236887 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 165 193 6.4E-9 T 14-10-2018 IPR003004 GspF/PilC family RY45_02250 31df9c9b6eeed4f8aa50b085d4236887 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 66 78 6.4E-9 T 14-10-2018 IPR003004 GspF/PilC family RY45_02250 31df9c9b6eeed4f8aa50b085d4236887 406 Gene3D G3DSA:1.20.81.30 256 368 2.0E-29 T 14-10-2018 RY45_02250 31df9c9b6eeed4f8aa50b085d4236887 406 Pfam PF00482 Type II secretion system (T2SS), protein F 70 193 4.5E-26 T 14-10-2018 IPR018076 Type II secretion system F domain RY45_02250 31df9c9b6eeed4f8aa50b085d4236887 406 Pfam PF00482 Type II secretion system (T2SS), protein F 273 395 6.0E-30 T 14-10-2018 IPR018076 Type II secretion system F domain RY45_21895 98e3ff90d5f381bb255b2adc4eeb38c5 329 Gene3D G3DSA:1.20.1270.170 150 308 3.3E-128 T 14-10-2018 RY45_21895 98e3ff90d5f381bb255b2adc4eeb38c5 329 Hamap MF_01497 Stress response kinase A [srkA]. 5 319 47.926 T 14-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 RY45_21895 98e3ff90d5f381bb255b2adc4eeb38c5 329 Gene3D G3DSA:1.10.510.10 61 259 3.3E-128 T 14-10-2018 RY45_21895 98e3ff90d5f381bb255b2adc4eeb38c5 329 Pfam PF01636 Phosphotransferase enzyme family 36 265 3.5E-43 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase RY45_21895 98e3ff90d5f381bb255b2adc4eeb38c5 329 SUPERFAMILY SSF56112 5 329 4.67E-91 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily RY45_21895 98e3ff90d5f381bb255b2adc4eeb38c5 329 Gene3D G3DSA:3.30.200.70 14 109 3.3E-128 T 14-10-2018 RY45_07535 8abf25269009b247eda6d02ee27db8b5 528 Pfam PF02378 Phosphotransferase system, EIIC 18 358 2.5E-81 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RY45_07535 8abf25269009b247eda6d02ee27db8b5 528 Pfam PF00367 phosphotransferase system, EIIB 456 487 1.4E-12 T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_07535 8abf25269009b247eda6d02ee27db8b5 528 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 418 512 1.4E-23 T 14-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RY45_07535 8abf25269009b247eda6d02ee27db8b5 528 TIGRFAM TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-specific IIBC component 7 526 2.6E-273 T 14-10-2018 IPR011301 PTS system, maltose/glucose-specific IIBC component GO:0008982|GO:0009401 KEGG: 00500+2.7.1.208 RY45_07535 8abf25269009b247eda6d02ee27db8b5 528 Gene3D G3DSA:3.30.1360.60 451 527 3.4E-24 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_07535 8abf25269009b247eda6d02ee27db8b5 528 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 465 482 - T 14-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RY45_07535 8abf25269009b247eda6d02ee27db8b5 528 SUPERFAMILY SSF55604 455 527 4.32E-20 T 14-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 83 93 - T 14-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 7 15 - T 14-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 Gene3D G3DSA:3.40.50.1170 1 207 6.0E-87 T 14-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 Gene3D G3DSA:3.40.50.40 208 334 4.6E-44 T 14-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 Pfam PF00710 Asparaginase, N-terminal 5 187 4.1E-66 T 14-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 SMART SM00870 4 322 3.9E-139 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 2 334 3.5E-117 T 14-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 PIRSF PIRSF500176 1 331 5.2E-109 T 14-10-2018 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 PRINTS PR00139 Asparaginase/glutaminase family signature 259 277 1.1E-15 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 PRINTS PR00139 Asparaginase/glutaminase family signature 5 16 1.1E-15 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 PRINTS PR00139 Asparaginase/glutaminase family signature 82 100 1.1E-15 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 PIRSF PIRSF001220 1 333 1.3E-93 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RY45_17340 ff0fc12a61597781fe73fe58ebf135e3 335 SUPERFAMILY SSF53774 2 334 2.88E-110 T 14-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 RY45_17090 983ba648bdfba8de9ad5d398b7ff26ab 98 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 1.3E-33 T 14-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 RY45_17090 983ba648bdfba8de9ad5d398b7ff26ab 98 SUPERFAMILY SSF75471 1 95 2.75E-30 T 14-10-2018 IPR035920 YhbY-like superfamily RY45_17090 983ba648bdfba8de9ad5d398b7ff26ab 98 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 98 2.0E-34 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RY45_17090 983ba648bdfba8de9ad5d398b7ff26ab 98 SMART SM01103 3 86 1.1E-40 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RY45_17090 983ba648bdfba8de9ad5d398b7ff26ab 98 Gene3D G3DSA:3.30.110.60 1 98 1.7E-34 T 14-10-2018 IPR035920 YhbY-like superfamily RY45_17090 983ba648bdfba8de9ad5d398b7ff26ab 98 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 5.2E-21 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PRINTS PR00083 Histidinol dehydrogenase signature 195 220 1.3E-98 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PRINTS PR00083 Histidinol dehydrogenase signature 165 191 1.3E-98 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PRINTS PR00083 Histidinol dehydrogenase signature 249 268 1.3E-98 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PRINTS PR00083 Histidinol dehydrogenase signature 227 248 1.3E-98 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 1.3E-98 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PRINTS PR00083 Histidinol dehydrogenase signature 317 342 1.3E-98 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PRINTS PR00083 Histidinol dehydrogenase signature 358 376 1.3E-98 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PRINTS PR00083 Histidinol dehydrogenase signature 134 160 1.3E-98 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 Gene3D G3DSA:3.40.50.1980 32 229 2.5E-124 T 14-10-2018 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 Pfam PF00815 Histidinol dehydrogenase 25 424 7.8E-168 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 424 40.759 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 423 1.7E-161 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 Gene3D G3DSA:3.40.50.1980 231 346 2.5E-124 T 14-10-2018 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 227 259 - T 14-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 PIRSF PIRSF000099 1 427 2.1E-163 T 14-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RY45_11860 602a684a573c1176bbcdd51c8da73853 441 SUPERFAMILY SSF53720 4 426 4.71E-89 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_08505 c5b1d508bf1cd8345015aa4518d42c8f 254 SUPERFAMILY SSF56281 5 254 2.62E-71 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_08505 c5b1d508bf1cd8345015aa4518d42c8f 254 Pfam PF00753 Metallo-beta-lactamase superfamily 14 166 1.1E-22 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_08505 c5b1d508bf1cd8345015aa4518d42c8f 254 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 254 7.9E-102 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 RY45_08505 c5b1d508bf1cd8345015aa4518d42c8f 254 PIRSF PIRSF005457 1 254 1.8E-94 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 RY45_08505 c5b1d508bf1cd8345015aa4518d42c8f 254 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 254 44.361 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 RY45_08505 c5b1d508bf1cd8345015aa4518d42c8f 254 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 167 254 1.9E-24 T 14-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 RY45_08505 c5b1d508bf1cd8345015aa4518d42c8f 254 SMART SM00849 12 166 3.8E-34 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_08505 c5b1d508bf1cd8345015aa4518d42c8f 254 Gene3D G3DSA:3.60.15.10 1 254 1.2E-92 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_18405 3d8461d1da5a5cbd86b6247d8d5cbad8 308 Gene3D G3DSA:2.40.440.10 22 307 4.8E-85 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_18405 3d8461d1da5a5cbd86b6247d8d5cbad8 308 Pfam PF03734 L,D-transpeptidase catalytic domain 101 232 1.9E-16 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RY45_18405 3d8461d1da5a5cbd86b6247d8d5cbad8 308 SUPERFAMILY SSF141523 95 234 3.01E-26 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_17530 7f7873f16377061a2ceb8ae7be6504a8 251 SUPERFAMILY SSF54060 27 243 3.3E-67 T 14-10-2018 RY45_17530 7f7873f16377061a2ceb8ae7be6504a8 251 SMART SM00892 44 236 7.3E-59 T 14-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 RY45_17530 7f7873f16377061a2ceb8ae7be6504a8 251 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 104 112 - T 14-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 RY45_17530 7f7873f16377061a2ceb8ae7be6504a8 251 Pfam PF01223 DNA/RNA non-specific endonuclease 29 235 1.0E-52 T 14-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 RY45_17530 7f7873f16377061a2ceb8ae7be6504a8 251 Gene3D G3DSA:3.40.570.10 24 249 2.9E-73 T 14-10-2018 RY45_17530 7f7873f16377061a2ceb8ae7be6504a8 251 SMART SM00477 45 236 3.6E-53 T 14-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 RY45_13895 01d1ea9de2ba0f399b5653897377c311 433 Gene3D G3DSA:3.30.70.1770 288 351 1.5E-15 T 14-10-2018 RY45_13895 01d1ea9de2ba0f399b5653897377c311 433 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 3 416 4.0E-82 T 14-10-2018 IPR012843 Type III secretion system YscD/HrpQ RY45_13895 01d1ea9de2ba0f399b5653897377c311 433 SUPERFAMILY SSF49879 10 92 1.45E-5 T 14-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 RY45_13895 01d1ea9de2ba0f399b5653897377c311 433 Pfam PF16697 Inner membrane component of T3SS, cytoplasmic domain 6 98 9.3E-18 T 14-10-2018 IPR032030 YscD, cytoplasmic domain RY45_13895 01d1ea9de2ba0f399b5653897377c311 433 Gene3D G3DSA:2.60.200.20 1 117 8.2E-15 T 14-10-2018 RY45_13895 01d1ea9de2ba0f399b5653897377c311 433 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 164 416 1.9E-92 T 14-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain RY45_01635 f82707d887b60c0246fc4c44e1765781 192 Pfam PF04220 Der GTPase activator (YihI) 9 156 7.2E-49 T 14-10-2018 IPR007336 Der GTPase activator GO:0005096 RY45_01635 f82707d887b60c0246fc4c44e1765781 192 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 179 16.161 T 14-10-2018 IPR007336 Der GTPase activator GO:0005096 RY45_16670 5317fca0dec73a6eb820e2fcf99a34c3 200 Pfam PF00881 Nitroreductase family 9 178 5.6E-14 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RY45_16670 5317fca0dec73a6eb820e2fcf99a34c3 200 SUPERFAMILY SSF55469 4 199 2.22E-70 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RY45_16670 5317fca0dec73a6eb820e2fcf99a34c3 200 Gene3D G3DSA:3.40.109.10 2 200 5.6E-82 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RY45_09870 201ce7e0f2bcd65cf2855418b8a98b56 205 Pfam PF03942 DTW domain 10 193 7.6E-46 T 14-10-2018 IPR005636 DTW RY45_09870 201ce7e0f2bcd65cf2855418b8a98b56 205 SMART SM01144 8 201 2.8E-59 T 14-10-2018 IPR005636 DTW RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 SUPERFAMILY SSF55785 21 115 1.38E-28 T 14-10-2018 IPR035965 PAS domain superfamily RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 Gene3D G3DSA:1.10.287.950 200 517 1.4E-58 T 14-10-2018 RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 313 483 8.0E-37 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 Pfam PF08447 PAS fold 32 115 1.5E-18 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 SUPERFAMILY SSF58104 262 516 6.93E-68 T 14-10-2018 RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 SMART SM00283 256 517 1.3E-44 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 114 3.3E-15 T 14-10-2018 IPR000014 PAS domain RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 Gene3D G3DSA:3.30.450.20 15 141 3.7E-27 T 14-10-2018 RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 277 306 3.2E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 354 381 3.2E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_13825 ae382279091d3e28dbdd1dc5fb64d9a4 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 383 412 3.2E-20 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_21250 c46bc8488938155c6ef104db42cbe002 251 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 7 247 1.1E-86 T 14-10-2018 IPR017689 Outer membrane protein assembly factor BamD RY45_21250 c46bc8488938155c6ef104db42cbe002 251 Pfam PF13525 Outer membrane lipoprotein 29 235 4.0E-75 T 14-10-2018 IPR039565 Outer membrane lipoprotein BamD-like RY45_21250 c46bc8488938155c6ef104db42cbe002 251 Gene3D G3DSA:1.25.40.10 30 250 3.1E-57 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_21250 c46bc8488938155c6ef104db42cbe002 251 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 243 37.8 T 14-10-2018 IPR017689 Outer membrane protein assembly factor BamD RY45_21250 c46bc8488938155c6ef104db42cbe002 251 SUPERFAMILY SSF48452 30 105 1.36E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_21655 052064c26b97180cb9e9d70fa95a4685 327 SUPERFAMILY SSF51658 220 298 3.06E-5 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily RY45_21655 052064c26b97180cb9e9d70fa95a4685 327 Gene3D G3DSA:3.90.550.10 2 248 2.6E-42 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_21655 052064c26b97180cb9e9d70fa95a4685 327 Pfam PF00535 Glycosyl transferase family 2 8 173 2.8E-23 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RY45_21655 052064c26b97180cb9e9d70fa95a4685 327 SUPERFAMILY SSF53448 6 232 4.88E-43 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_03065 a7c2d355fa64339881d0d9deecd301a7 183 Gene3D G3DSA:2.60.40.1090 33 182 9.9E-30 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 RY45_03065 a7c2d355fa64339881d0d9deecd301a7 183 SUPERFAMILY SSF49401 33 183 1.54E-32 T 14-10-2018 IPR008966 Adhesion domain superfamily RY45_03065 a7c2d355fa64339881d0d9deecd301a7 183 Pfam PF00419 Fimbrial protein 35 182 1.3E-13 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 RY45_21755 03177d85adea5df6ab53b9d80800c5a0 377 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 14-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site RY45_21755 03177d85adea5df6ab53b9d80800c5a0 377 SUPERFAMILY SSF53335 18 374 3.49E-52 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_21755 03177d85adea5df6ab53b9d80800c5a0 377 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 19 375 2.1E-175 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RY45_21755 03177d85adea5df6ab53b9d80800c5a0 377 Gene3D G3DSA:3.40.50.150 22 370 4.6E-137 T 14-10-2018 RY45_21755 03177d85adea5df6ab53b9d80800c5a0 377 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 13 375 43.109 T 14-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 RY45_21755 03177d85adea5df6ab53b9d80800c5a0 377 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 308 337 - T 14-10-2018 IPR030390 RNA methyltransferase TrmA, active site RY45_21755 03177d85adea5df6ab53b9d80800c5a0 377 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 19 375 5.3E-172 T 14-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 RY45_21755 03177d85adea5df6ab53b9d80800c5a0 377 Gene3D G3DSA:3.40.1350.30 54 198 4.6E-137 T 14-10-2018 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 135 158 - T 14-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 310 3.1E-106 T 14-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 Gene3D G3DSA:3.10.25.10 209 313 5.3E-37 T 14-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 4 306 36.913 T 14-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 SUPERFAMILY SSF53328 3 206 4.19E-66 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 SUPERFAMILY SSF50486 207 309 2.2E-35 T 14-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 Pfam PF00551 Formyl transferase 7 182 1.9E-51 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 Pfam PF02911 Formyl transferase, C-terminal domain 206 303 7.3E-31 T 14-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_01565 41fb51be2ecc789ce0ec3680c180a657 314 Gene3D G3DSA:3.40.50.170 1 208 3.1E-83 T 14-10-2018 RY45_12165 5cb7fd65d3f0f5edaf63218317b4d9c6 240 Gene3D G3DSA:3.30.750.120 2 115 8.7E-36 T 14-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily RY45_12165 5cb7fd65d3f0f5edaf63218317b4d9c6 240 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 4 103 2.4E-22 T 14-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 RY45_12165 5cb7fd65d3f0f5edaf63218317b4d9c6 240 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 7 239 2.4E-59 T 14-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 RY45_12165 5cb7fd65d3f0f5edaf63218317b4d9c6 240 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 139 236 6.1E-31 T 14-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 RY45_12165 5cb7fd65d3f0f5edaf63218317b4d9c6 240 SUPERFAMILY SSF63848 136 239 4.32E-30 T 14-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 RY45_12165 5cb7fd65d3f0f5edaf63218317b4d9c6 240 Gene3D G3DSA:2.160.20.70 133 240 1.2E-31 T 14-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 RY45_12165 5cb7fd65d3f0f5edaf63218317b4d9c6 240 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 240 26.177 T 14-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 RY45_21100 054e3742c1fe9999f57e5b00ec439893 312 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 7 312 4.5E-156 T 14-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RY45_21100 054e3742c1fe9999f57e5b00ec439893 312 Hamap MF_00215 Pantothenate kinase [coaA]. 1 312 183.657 T 14-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RY45_21100 054e3742c1fe9999f57e5b00ec439893 312 Gene3D G3DSA:3.40.50.300 1 312 2.8E-95 T 14-10-2018 RY45_21100 054e3742c1fe9999f57e5b00ec439893 312 SUPERFAMILY SSF52540 4 312 9.18E-76 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21100 054e3742c1fe9999f57e5b00ec439893 312 PIRSF PIRSF000545 1 312 1.5E-148 T 14-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RY45_21100 054e3742c1fe9999f57e5b00ec439893 312 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 86 240 1.2E-14 T 14-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 Pfam PF03222 Tryptophan/tyrosine permease family 2 384 3.9E-104 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PIRSF PIRSF006060 299 396 2.1 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PIRSF PIRSF006060 2 56 0.3 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PIRSF PIRSF006060 66 297 8.2E-8 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 37 56 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 81 101 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 311 329 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 180 202 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 277 296 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 332 351 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 146 166 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 10 33 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 PRINTS PR00166 Aromatic amino acid permease signature 219 238 2.2E-73 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 Gene3D G3DSA:1.20.1740.10 2 395 1.0E-13 T 14-10-2018 RY45_11115 871f8bf46ae9beb80aa87595f337284c 397 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 8 374 1.3E-105 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_16330 099cbc0bd5b89931553d018f0f753fb5 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 14-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 RY45_16330 099cbc0bd5b89931553d018f0f753fb5 610 SUPERFAMILY SSF116726 322 393 1.44E-15 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_16330 099cbc0bd5b89931553d018f0f753fb5 610 Pfam PF03600 Citrate transporter 17 555 2.4E-55 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 RY45_16330 099cbc0bd5b89931553d018f0f753fb5 610 Pfam PF02080 TrkA-C domain 326 391 3.3E-10 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_16330 099cbc0bd5b89931553d018f0f753fb5 610 Pfam PF02080 TrkA-C domain 231 297 6.4E-14 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_16330 099cbc0bd5b89931553d018f0f753fb5 610 SUPERFAMILY SSF116726 232 289 2.09E-9 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_16330 099cbc0bd5b89931553d018f0f753fb5 610 Gene3D G3DSA:3.30.70.1450 323 398 9.4E-15 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_16330 099cbc0bd5b89931553d018f0f753fb5 610 Gene3D G3DSA:3.30.70.1450 229 306 3.2E-13 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_20915 1fea78dd3d6d633c753c7b335030b077 372 SUPERFAMILY SSF55909 34 372 4.64E-109 T 14-10-2018 RY45_20915 1fea78dd3d6d633c753c7b335030b077 372 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 29 4.2E-4 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RY45_20915 1fea78dd3d6d633c753c7b335030b077 372 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 42 371 4.0E-99 T 14-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 RY45_20915 1fea78dd3d6d633c753c7b335030b077 372 Gene3D G3DSA:3.75.10.10 29 372 1.3E-111 T 14-10-2018 RY45_00475 7acd0878e6d5485a88f280d094c64086 350 Pfam PF05125 Phage major capsid protein, P2 family 8 340 3.8E-144 T 14-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid RY45_00475 7acd0878e6d5485a88f280d094c64086 350 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 6 340 1.2E-105 T 14-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid RY45_02380 79ba5a41b285fc60f03084625fecbf81 438 SUPERFAMILY SSF103473 17 430 2.62E-59 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_02380 79ba5a41b285fc60f03084625fecbf81 438 Pfam PF07690 Major Facilitator Superfamily 65 386 6.0E-24 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_02380 79ba5a41b285fc60f03084625fecbf81 438 Gene3D G3DSA:1.20.1250.20 18 437 1.5E-53 T 14-10-2018 RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 Gene3D G3DSA:3.30.160.70 1 70 4.6E-14 T 14-10-2018 RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 75 154 4.8E-38 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 76 156 5.2E-35 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 1 71 1.1E-7 T 14-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 125 131 - T 14-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 Gene3D G3DSA:1.10.10.10 74 157 2.4E-37 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 SUPERFAMILY SSF46767 74 156 2.49E-34 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 6 155 41.439 T 14-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 RY45_05720 fd3b64e161d9e23e9bbd11782e26b040 158 SUPERFAMILY SSF53155 4 79 2.16E-12 T 14-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RY45_10845 811bf44d4f6f096fb58833e607c0561f 461 SUPERFAMILY SSF52540 73 355 8.29E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10845 811bf44d4f6f096fb58833e607c0561f 461 Pfam PF00271 Helicase conserved C-terminal domain 239 338 9.7E-27 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_10845 811bf44d4f6f096fb58833e607c0561f 461 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RY45_10845 811bf44d4f6f096fb58833e607c0561f 461 SMART SM00490 257 338 1.4E-32 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_10845 811bf44d4f6f096fb58833e607c0561f 461 Pfam PF00270 DEAD/DEAH box helicase 25 194 5.7E-50 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_10845 811bf44d4f6f096fb58833e607c0561f 461 SMART SM00487 20 221 1.7E-64 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_10845 811bf44d4f6f096fb58833e607c0561f 461 Gene3D G3DSA:3.40.50.300 212 377 1.4E-48 T 14-10-2018 RY45_10845 811bf44d4f6f096fb58833e607c0561f 461 Gene3D G3DSA:3.40.50.300 1 209 3.7E-79 T 14-10-2018 RY45_01430 249c0081c751454ca4aca9eaf9a2ba10 166 SUPERFAMILY SSF109854 5 162 2.47E-45 T 14-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RY45_01430 249c0081c751454ca4aca9eaf9a2ba10 166 Gene3D G3DSA:1.20.120.450 1 161 1.1E-43 T 14-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RY45_01430 249c0081c751454ca4aca9eaf9a2ba10 166 Pfam PF09351 Domain of unknown function (DUF1993) 3 160 8.2E-53 T 14-10-2018 IPR018531 Protein of unknown function DUF1993 RY45_13355 dda6afae7cdc4105e4d0795693633d94 753 Pfam PF00884 Sulfatase 468 680 1.4E-16 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RY45_13355 dda6afae7cdc4105e4d0795693633d94 753 Gene3D G3DSA:3.40.720.10 455 693 1.7E-27 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_13355 dda6afae7cdc4105e4d0795693633d94 753 SUPERFAMILY SSF53649 466 680 1.02E-14 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_16345 1fa464e6297019173d99f3d77d866f5d 223 Gene3D G3DSA:2.60.120.10 13 151 8.9E-16 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_16345 1fa464e6297019173d99f3d77d866f5d 223 SUPERFAMILY SSF51206 15 142 7.73E-19 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like RY45_16345 1fa464e6297019173d99f3d77d866f5d 223 Pfam PF00027 Cyclic nucleotide-binding domain 34 116 1.5E-11 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_16345 1fa464e6297019173d99f3d77d866f5d 223 SMART SM00100 14 134 1.7E-4 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_00795 f999623fed3054d3e0b159c230a989ad 805 TIGRFAM TIGR03502 lipase_Pla1_cef: extracellular lipase, Pla-1/cef family 1 790 2.6E-149 T 14-10-2018 IPR020009 Extracellular lipase, Pla-1/cef family RY45_00795 f999623fed3054d3e0b159c230a989ad 805 Gene3D G3DSA:3.40.50.1820 429 591 2.1E-10 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_00795 f999623fed3054d3e0b159c230a989ad 805 SUPERFAMILY SSF53474 449 581 1.99E-5 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_00795 f999623fed3054d3e0b159c230a989ad 805 Pfam PF12262 Bacterial virulence factor lipase N-terminal 32 252 9.0E-30 T 14-10-2018 IPR025920 Bacterial virulence factor lipase, N-terminal domain RY45_11505 1c8bc9cfb131fdb7d39b7a71f8b0e4b6 266 Gene3D G3DSA:1.25.40.10 21 265 3.0E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_11505 1c8bc9cfb131fdb7d39b7a71f8b0e4b6 266 SUPERFAMILY SSF48452 94 228 1.75E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_19480 b6bae8c4bfef122757755a9e48e01daf 441 Pfam PF02321 Outer membrane efflux protein 229 416 1.8E-34 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_19480 b6bae8c4bfef122757755a9e48e01daf 441 Pfam PF02321 Outer membrane efflux protein 24 205 4.7E-25 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_19480 b6bae8c4bfef122757755a9e48e01daf 441 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 19 428 3.3E-112 T 14-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 RY45_19480 b6bae8c4bfef122757755a9e48e01daf 441 Gene3D G3DSA:1.20.1600.10 21 438 1.4E-118 T 14-10-2018 RY45_19480 b6bae8c4bfef122757755a9e48e01daf 441 SUPERFAMILY SSF56954 1 418 2.62E-89 T 14-10-2018 RY45_02815 53923806bb25602d34165ca380eeb479 152 SUPERFAMILY SSF55729 3 146 2.92E-26 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_02815 53923806bb25602d34165ca380eeb479 152 Pfam PF00583 Acetyltransferase (GNAT) family 26 126 5.4E-12 T 14-10-2018 IPR000182 GNAT domain RY45_02815 53923806bb25602d34165ca380eeb479 152 Gene3D G3DSA:3.40.630.30 1 151 3.7E-29 T 14-10-2018 RY45_16375 29dc0f3c47ce23c8d3901b7740155b92 454 SUPERFAMILY SSF103473 7 447 3.01E-62 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_16375 29dc0f3c47ce23c8d3901b7740155b92 454 Gene3D G3DSA:1.20.1720.10 8 214 9.5E-52 T 14-10-2018 RY45_16375 29dc0f3c47ce23c8d3901b7740155b92 454 Gene3D G3DSA:1.20.1250.20 244 449 2.7E-19 T 14-10-2018 RY45_16375 29dc0f3c47ce23c8d3901b7740155b92 454 Pfam PF07690 Major Facilitator Superfamily 11 390 9.4E-52 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_04360 ece90c8c54d6a5fb24be8b652e8b272f 146 Gene3D G3DSA:3.40.630.30 6 136 3.8E-39 T 14-10-2018 RY45_04360 ece90c8c54d6a5fb24be8b652e8b272f 146 Pfam PF00583 Acetyltransferase (GNAT) family 43 125 8.0E-10 T 14-10-2018 IPR000182 GNAT domain RY45_04360 ece90c8c54d6a5fb24be8b652e8b272f 146 SUPERFAMILY SSF55729 18 127 6.25E-21 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_10300 ae16cbcddf9cf690e813a564f2083313 164 Gene3D G3DSA:3.40.630.30 1 163 9.9E-30 T 14-10-2018 RY45_10300 ae16cbcddf9cf690e813a564f2083313 164 SUPERFAMILY SSF55729 1 158 2.92E-30 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_10300 ae16cbcddf9cf690e813a564f2083313 164 Pfam PF00583 Acetyltransferase (GNAT) family 13 137 3.6E-14 T 14-10-2018 IPR000182 GNAT domain RY45_19415 162bbde9dcf78a142728c455a5d5c5cf 414 Gene3D G3DSA:1.20.1250.20 25 400 3.4E-51 T 14-10-2018 RY45_19415 162bbde9dcf78a142728c455a5d5c5cf 414 Pfam PF07690 Major Facilitator Superfamily 33 361 1.5E-41 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_19415 162bbde9dcf78a142728c455a5d5c5cf 414 SUPERFAMILY SSF103473 27 407 1.44E-55 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_01640 3767e5adee0f53f71c021751ce93288f 146 Pfam PF10675 Protein of unknown function (DUF2489) 12 139 2.5E-46 T 14-10-2018 IPR019617 Domain of unknown function DUF2489 RY45_10550 9d4f248beb2472d6de56cde6cda5e01d 230 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 134 145 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_10550 9d4f248beb2472d6de56cde6cda5e01d 230 Pfam PF13247 4Fe-4S dicluster domain 93 190 2.8E-24 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_10550 9d4f248beb2472d6de56cde6cda5e01d 230 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 2 227 2.1E-114 T 14-10-2018 IPR017567 Cytochrome c nitrite reductase, Fe-S protein RY45_10550 9d4f248beb2472d6de56cde6cda5e01d 230 Gene3D G3DSA:3.30.70.20 46 221 1.6E-57 T 14-10-2018 RY45_10550 9d4f248beb2472d6de56cde6cda5e01d 230 SUPERFAMILY SSF54862 45 224 7.22E-61 T 14-10-2018 RY45_10550 9d4f248beb2472d6de56cde6cda5e01d 230 Gene3D G3DSA:3.30.70.20 107 160 1.6E-57 T 14-10-2018 RY45_20155 bc464040952b3adbaa45004dbff4eec8 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 133 1.0E-51 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RY45_20155 bc464040952b3adbaa45004dbff4eec8 152 Gene3D G3DSA:2.40.330.20 1 139 5.3E-43 T 14-10-2018 IPR038619 MraZ superfamily RY45_20155 bc464040952b3adbaa45004dbff4eec8 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 4.0E-20 T 14-10-2018 IPR020603 MraZ domain RY45_20155 bc464040952b3adbaa45004dbff4eec8 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 132 4.4E-19 T 14-10-2018 IPR020603 MraZ domain RY45_20155 bc464040952b3adbaa45004dbff4eec8 152 SUPERFAMILY SSF89447 2 135 4.81E-46 T 14-10-2018 IPR037914 SpoVT-AbrB domain superfamily RY45_20155 bc464040952b3adbaa45004dbff4eec8 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 56.673 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RY45_20155 bc464040952b3adbaa45004dbff4eec8 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 151 2.6E-55 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RY45_06990 02597d388d70d1289a2e49f928365d1e 80 Pfam PF04728 Lipoprotein leucine-zipper 29 80 2.7E-17 T 14-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 RY45_06990 02597d388d70d1289a2e49f928365d1e 80 PIRSF PIRSF002855 1 80 3.7E-23 T 14-10-2018 IPR016367 Murein-lipoprotein RY45_06990 02597d388d70d1289a2e49f928365d1e 80 SUPERFAMILY SSF58042 18 79 7.33E-19 T 14-10-2018 RY45_06990 02597d388d70d1289a2e49f928365d1e 80 Gene3D G3DSA:1.20.5.190 19 79 4.0E-19 T 14-10-2018 RY45_17495 b05bc477252f3a05a5f6fb1f761e52ea 82 SUPERFAMILY SSF47336 1 81 3.27E-19 T 14-10-2018 IPR036736 ACP-like superfamily RY45_17495 b05bc477252f3a05a5f6fb1f761e52ea 82 Hamap MF_01217 Acyl carrier protein [acpP]. 5 79 14.346 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RY45_17495 b05bc477252f3a05a5f6fb1f761e52ea 82 Pfam PF00550 Phosphopantetheine attachment site 9 75 3.3E-12 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain RY45_17495 b05bc477252f3a05a5f6fb1f761e52ea 82 Gene3D G3DSA:1.10.1200.10 1 77 1.6E-19 T 14-10-2018 IPR036736 ACP-like superfamily RY45_08395 6d60abcc66c02308bf2a14992a70d17d 558 Gene3D G3DSA:1.10.3720.10 326 548 2.5E-14 T 14-10-2018 IPR035906 MetI-like superfamily RY45_08395 6d60abcc66c02308bf2a14992a70d17d 558 Gene3D G3DSA:1.10.3720.10 12 279 1.5E-17 T 14-10-2018 IPR035906 MetI-like superfamily RY45_08395 6d60abcc66c02308bf2a14992a70d17d 558 SUPERFAMILY SSF161098 305 544 1.7E-18 T 14-10-2018 IPR035906 MetI-like superfamily RY45_08395 6d60abcc66c02308bf2a14992a70d17d 558 SUPERFAMILY SSF161098 14 270 4.32E-21 T 14-10-2018 IPR035906 MetI-like superfamily RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 244 8.7E-66 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 7.0E-18 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 7.0E-18 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 7.0E-18 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 7.0E-18 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 Gene3D G3DSA:1.10.1020.10 57 156 3.8E-84 T 14-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 SUPERFAMILY SSF53335 5 268 8.14E-76 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 2.4E-92 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 Gene3D G3DSA:3.40.50.150 7 239 3.8E-84 T 14-10-2018 RY45_16435 6e0746a93388971e44e0d7d61008e13a 290 PIRSF PIRSF000398 1 272 1.5E-65 T 14-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 RY45_15780 e91f1098b9f0190c73854cf5ed2b3af1 412 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 321 341 - T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RY45_15780 e91f1098b9f0190c73854cf5ed2b3af1 412 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 3 397 5.6E-109 T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RY45_15780 e91f1098b9f0190c73854cf5ed2b3af1 412 Pfam PF00860 Permease family 6 371 1.3E-92 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RY45_15205 4eec7184af7c440e4e54ac8abd0121bf 203 Gene3D G3DSA:1.20.120.80 18 203 3.7E-59 T 14-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15205 4eec7184af7c440e4e54ac8abd0121bf 203 SUPERFAMILY SSF81452 19 201 2.49E-58 T 14-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15205 4eec7184af7c440e4e54ac8abd0121bf 203 Pfam PF00510 Cytochrome c oxidase subunit III 16 201 1.1E-13 T 14-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_15205 4eec7184af7c440e4e54ac8abd0121bf 203 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 24 203 1.1E-89 T 14-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 RY45_03185 6e15cb3e40be7af40e30ecb533c5b71e 173 SUPERFAMILY SSF158668 1 168 1.44E-55 T 14-10-2018 IPR038026 MtlR-like superfamily RY45_03185 6e15cb3e40be7af40e30ecb533c5b71e 173 Gene3D G3DSA:1.20.120.330 1 169 4.5E-57 T 14-10-2018 RY45_03185 6e15cb3e40be7af40e30ecb533c5b71e 173 Pfam PF05068 Mannitol repressor 5 168 3.4E-59 T 14-10-2018 IPR007761 Mannitol repressor MtlR-like RY45_06105 3d45a87d0f6385e089346c195aa3b3c1 447 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 257 1.8E-110 T 14-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 RY45_06105 3d45a87d0f6385e089346c195aa3b3c1 447 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 447 45.135 T 14-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 RY45_06105 3d45a87d0f6385e089346c195aa3b3c1 447 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 446 1.9E-182 T 14-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 RY45_06105 3d45a87d0f6385e089346c195aa3b3c1 447 Pfam PF11973 NQRA C-terminal domain 262 311 4.0E-19 T 14-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 RY45_11430 1d4499ec79ffda8073e870c424742421 336 Gene3D G3DSA:3.20.20.70 2 336 4.1E-137 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_11430 1d4499ec79ffda8073e870c424742421 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 14-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 RY45_11430 1d4499ec79ffda8073e870c424742421 336 SUPERFAMILY SSF51395 1 334 1.39E-106 T 14-10-2018 RY45_11430 1d4499ec79ffda8073e870c424742421 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.287 T 14-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 RY45_11430 1d4499ec79ffda8073e870c424742421 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 14-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 RY45_11430 1d4499ec79ffda8073e870c424742421 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 5.5E-146 T 14-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 RY45_11430 1d4499ec79ffda8073e870c424742421 336 PIRSF PIRSF000164 11 336 5.5E-97 T 14-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 RY45_11430 1d4499ec79ffda8073e870c424742421 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 1.6E-89 T 14-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RY45_08890 483a17a1dc67653da52729d728c69e35 217 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 12 129 5.0E-52 T 14-10-2018 IPR013559 YheO-like RY45_08890 483a17a1dc67653da52729d728c69e35 217 Pfam PF13309 HTH domain 155 212 4.8E-14 T 14-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain RY45_08890 483a17a1dc67653da52729d728c69e35 217 Pfam PF08348 YheO-like PAS domain 14 119 1.5E-33 T 14-10-2018 IPR013559 YheO-like RY45_08885 d3848ba29d27b2258274ecd4de08f4f3 429 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 4 429 33.769 T 14-10-2018 IPR021144 Uncharacterised protein family UPF0597 RY45_08885 d3848ba29d27b2258274ecd4de08f4f3 429 Pfam PF03313 Serine dehydratase alpha chain 87 424 2.9E-49 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit RY45_08885 d3848ba29d27b2258274ecd4de08f4f3 429 PIRSF PIRSF006054 1 429 1.8E-171 T 14-10-2018 IPR021144 Uncharacterised protein family UPF0597 RY45_13570 daef35cd797f266904d3b92b97c8e671 210 Pfam PF10014 2OG-Fe dioxygenase 26 209 8.9E-50 T 14-10-2018 IPR018724 2OG-Fe dioxygenase RY45_13570 daef35cd797f266904d3b92b97c8e671 210 Gene3D G3DSA:2.60.120.620 5 210 1.6E-52 T 14-10-2018 RY45_10895 3e11dbf525ffd4628a781f2c248c9619 545 SUPERFAMILY SSF52540 1 328 2.42E-18 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10895 3e11dbf525ffd4628a781f2c248c9619 545 Pfam PF11398 Protein of unknown function (DUF2813) 1 371 1.8E-142 T 14-10-2018 IPR022602 Protein of unknown function DUF2813 RY45_10895 3e11dbf525ffd4628a781f2c248c9619 545 Gene3D G3DSA:3.40.50.300 1 337 6.2E-16 T 14-10-2018 RY45_14630 b341e002accf7768bf3df9d3751da465 341 Gene3D G3DSA:3.30.420.40 2 165 1.0E-86 T 14-10-2018 RY45_14630 b341e002accf7768bf3df9d3751da465 341 Pfam PF06406 StbA protein 2 318 3.8E-102 T 14-10-2018 IPR009440 Plasmid segregation protein ParM/StbA RY45_14630 b341e002accf7768bf3df9d3751da465 341 SUPERFAMILY SSF53067 163 321 9.46E-21 T 14-10-2018 RY45_14630 b341e002accf7768bf3df9d3751da465 341 Gene3D G3DSA:3.30.420.40 166 292 1.0E-86 T 14-10-2018 RY45_14630 b341e002accf7768bf3df9d3751da465 341 SUPERFAMILY SSF53067 2 156 1.81E-46 T 14-10-2018 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 SUPERFAMILY SSF51971 145 400 1.94E-66 T 14-10-2018 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 Gene3D G3DSA:1.10.1060.10 13 145 1.8E-33 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 458 9.9E-22 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 Gene3D G3DSA:3.50.50.60 253 399 6.0E-42 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 SUPERFAMILY SSF46548 6 157 2.2E-40 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 471 1.2E-246 T 14-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 3.6E-35 T 14-10-2018 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 3.6E-35 T 14-10-2018 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 PRINTS PR00419 Adrenodoxin reductase family signature 323 336 3.6E-35 T 14-10-2018 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 PRINTS PR00419 Adrenodoxin reductase family signature 289 303 3.6E-35 T 14-10-2018 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 3.6E-35 T 14-10-2018 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 3.5E-37 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 RY45_14225 ae4ac7abb472a581b3ab348650f0a222 471 Gene3D G3DSA:3.40.50.720 146 252 6.4E-14 T 14-10-2018 RY45_16280 4a53d158a1f0929f69ef1c8c44e9a949 198 Pfam PF01195 Peptidyl-tRNA hydrolase 7 190 2.3E-54 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RY45_16280 4a53d158a1f0929f69ef1c8c44e9a949 198 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 18 31 - T 14-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RY45_16280 4a53d158a1f0929f69ef1c8c44e9a949 198 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 5 184 35.47 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RY45_16280 4a53d158a1f0929f69ef1c8c44e9a949 198 Gene3D G3DSA:3.40.50.1470 1 196 1.3E-72 T 14-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 RY45_16280 4a53d158a1f0929f69ef1c8c44e9a949 198 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 192 1.8E-67 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RY45_16280 4a53d158a1f0929f69ef1c8c44e9a949 198 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 112 122 - T 14-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RY45_16280 4a53d158a1f0929f69ef1c8c44e9a949 198 SUPERFAMILY SSF53178 5 194 5.62E-70 T 14-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 RY45_09495 31e1f9f29fbc1351bfb05481498e3a84 297 SMART SM00028 125 158 300.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09495 31e1f9f29fbc1351bfb05481498e3a84 297 SMART SM00028 57 90 4.9 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09495 31e1f9f29fbc1351bfb05481498e3a84 297 SMART SM00028 91 124 2.9E-6 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09495 31e1f9f29fbc1351bfb05481498e3a84 297 SMART SM00028 229 262 7.6 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_09495 31e1f9f29fbc1351bfb05481498e3a84 297 SUPERFAMILY SSF48452 23 276 1.17E-71 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09495 31e1f9f29fbc1351bfb05481498e3a84 297 Pfam PF00515 Tetratricopeptide repeat 91 124 6.6E-7 T 14-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 RY45_09495 31e1f9f29fbc1351bfb05481498e3a84 297 Gene3D G3DSA:1.25.40.10 19 281 6.0E-90 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09495 31e1f9f29fbc1351bfb05481498e3a84 297 PIRSF PIRSF004654 1 282 6.5E-107 T 14-10-2018 IPR023605 Lipoprotein NlpI RY45_16400 322ed1a67975ef91eb1b56d422603cb7 339 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 338 8.5E-142 T 14-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RY45_16400 322ed1a67975ef91eb1b56d422603cb7 339 SUPERFAMILY SSF55729 1 338 1.04E-132 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_16400 322ed1a67975ef91eb1b56d422603cb7 339 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 336 1.5E-141 T 14-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RY45_16400 322ed1a67975ef91eb1b56d422603cb7 339 Gene3D G3DSA:3.40.630.30 1 273 5.4E-115 T 14-10-2018 RY45_16400 322ed1a67975ef91eb1b56d422603cb7 339 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 337 9.8E-138 T 14-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RY45_21945 f5da377e722b42089a770c32e93ccc76 370 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 145 335 1.2E-10 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 RY45_21945 f5da377e722b42089a770c32e93ccc76 370 Gene3D G3DSA:3.40.50.2000 32 182 1.4E-6 T 14-10-2018 RY45_21945 f5da377e722b42089a770c32e93ccc76 370 Gene3D G3DSA:3.40.50.2000 193 355 1.8E-14 T 14-10-2018 RY45_21945 f5da377e722b42089a770c32e93ccc76 370 SUPERFAMILY SSF53756 37 332 7.85E-43 T 14-10-2018 RY45_14025 3d97a6d85b41d050511139fdba3f2673 262 Pfam PF01311 Bacterial export proteins, family 1 11 244 2.1E-53 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_14025 3d97a6d85b41d050511139fdba3f2673 262 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 5 255 9.2E-82 T 14-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 RY45_14025 3d97a6d85b41d050511139fdba3f2673 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 19 40 5.5E-28 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_14025 3d97a6d85b41d050511139fdba3f2673 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 5.5E-28 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_14025 3d97a6d85b41d050511139fdba3f2673 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 79 98 5.5E-28 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_14025 3d97a6d85b41d050511139fdba3f2673 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 5.5E-28 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_18175 633405a3ccb686ac48da0601ccaa2a76 169 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 6.6E-43 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_18175 633405a3ccb686ac48da0601ccaa2a76 169 Gene3D G3DSA:3.30.70.560 1 159 2.8E-56 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_18175 633405a3ccb686ac48da0601ccaa2a76 169 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_18175 633405a3ccb686ac48da0601ccaa2a76 169 SUPERFAMILY SSF55083 1 157 3.79E-54 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_18175 633405a3ccb686ac48da0601ccaa2a76 169 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 1.2E-35 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_12075 9004e88120c304838869f8aee3a2318f 296 Pfam PF01882 Protein of unknown function DUF58 48 128 7.0E-23 T 14-10-2018 IPR002881 Domain of unknown function DUF58 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 SUPERFAMILY SSF52283 8 139 2.76E-49 T 14-10-2018 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 327 1.9E-37 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 SUPERFAMILY SSF55021 338 409 5.66E-18 T 14-10-2018 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 SUPERFAMILY SSF51735 109 296 5.35E-59 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 Gene3D G3DSA:3.30.70.260 329 409 7.5E-33 T 14-10-2018 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 155 182 - T 14-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 201 223 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 295 5.9E-53 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 Pfam PF01842 ACT domain 347 401 1.8E-6 T 14-10-2018 IPR002912 ACT domain RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 Gene3D G3DSA:3.40.50.720 15 313 8.5E-108 T 14-10-2018 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 Gene3D G3DSA:3.40.50.720 110 298 8.5E-108 T 14-10-2018 RY45_14360 3a8feab63db70d8092cec9b3a14d1355 410 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 230 246 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RY45_02265 68bd289c4b9f569f8da2b9eb5bb0f8f2 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 1.2E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02265 68bd289c4b9f569f8da2b9eb5bb0f8f2 145 Gene3D G3DSA:3.30.700.10 7 145 2.0E-16 T 14-10-2018 RY45_02265 68bd289c4b9f569f8da2b9eb5bb0f8f2 145 SUPERFAMILY SSF54523 7 103 1.18E-14 T 14-10-2018 RY45_02265 68bd289c4b9f569f8da2b9eb5bb0f8f2 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 3.5E-9 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02265 68bd289c4b9f569f8da2b9eb5bb0f8f2 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_01185 70467417c2296b38502ba6b36b111ebd 178 Pfam PF04345 Chorismate lyase 13 170 1.7E-32 T 14-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 RY45_01185 70467417c2296b38502ba6b36b111ebd 178 SUPERFAMILY SSF64288 12 171 4.32E-33 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_01185 70467417c2296b38502ba6b36b111ebd 178 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 13 174 22.715 T 14-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 RY45_01185 70467417c2296b38502ba6b36b111ebd 178 Gene3D G3DSA:3.40.1410.10 7 173 9.9E-37 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_11665 5d499544a4497567f3dc9c0789763830 1043 Gene3D G3DSA:2.40.50.140 32 125 4.2E-32 T 14-10-2018 RY45_11665 5d499544a4497567f3dc9c0789763830 1043 Pfam PF00575 S1 RNA binding domain 36 118 9.0E-16 T 14-10-2018 IPR003029 S1 domain GO:0003676 RY45_11665 5d499544a4497567f3dc9c0789763830 1043 SMART SM00316 37 119 1.6E-11 T 14-10-2018 IPR022967 RNA-binding domain, S1 RY45_11665 5d499544a4497567f3dc9c0789763830 1043 Pfam PF10150 Ribonuclease E/G family 121 390 5.9E-95 T 14-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RY45_11665 5d499544a4497567f3dc9c0789763830 1043 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 424 2.1E-170 T 14-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RY45_11665 5d499544a4497567f3dc9c0789763830 1043 Hamap MF_00970 Ribonuclease E [rne]. 1 996 35.55 T 14-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 RY45_11665 5d499544a4497567f3dc9c0789763830 1043 SUPERFAMILY SSF50249 40 124 9.97E-20 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_11665 5d499544a4497567f3dc9c0789763830 1043 Gene3D G3DSA:3.40.1260.20 400 507 3.0E-41 T 14-10-2018 RY45_02915 4b4005e1f5f45f11661f2f79949fb437 279 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 4 19 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02915 4b4005e1f5f45f11661f2f79949fb437 279 Pfam PF00809 Pterin binding enzyme 5 248 2.6E-69 T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02915 4b4005e1f5f45f11661f2f79949fb437 279 Gene3D G3DSA:3.20.20.20 1 270 2.0E-67 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02915 4b4005e1f5f45f11661f2f79949fb437 279 SUPERFAMILY SSF51717 3 265 1.7E-66 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_02915 4b4005e1f5f45f11661f2f79949fb437 279 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 4 262 4.8E-82 T 14-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 RY45_02915 4b4005e1f5f45f11661f2f79949fb437 279 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 38 51 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RY45_12885 bb0cb651e404a679f87a4e5d670797fe 183 Pfam PF07273 Protein of unknown function (DUF1439) 24 175 7.6E-48 T 14-10-2018 IPR010835 Protein of unknown function DUF1439 RY45_12885 bb0cb651e404a679f87a4e5d670797fe 183 Gene3D G3DSA:3.15.10.40 15 183 3.7E-55 T 14-10-2018 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 Gene3D G3DSA:3.20.80.10 137 285 2.6E-30 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 Pfam PF06445 GyrI-like small molecule binding domain 139 270 3.9E-20 T 14-10-2018 IPR029442 GyrI-like small molecule binding domain RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 SUPERFAMILY SSF55136 139 272 1.41E-26 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 SMART SM00342 20 103 1.9E-27 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 57 99 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 SUPERFAMILY SSF46689 56 105 1.97E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 Gene3D G3DSA:1.10.10.60 5 61 2.1E-12 T 14-10-2018 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 Gene3D G3DSA:1.10.10.60 62 113 1.6E-13 T 14-10-2018 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 SUPERFAMILY SSF46689 6 52 2.55E-5 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 Pfam PF12833 Helix-turn-helix domain 26 104 6.3E-21 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 72 87 5.2E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 103 5.2E-5 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_20860 6aac3b0bea7a0f5595b53f3c2036f825 285 SMART SM00871 136 285 1.3E-22 T 14-10-2018 IPR010499 Bacterial transcription activator, effector binding RY45_19840 d14839aee4ba84317b23faf014c63be2 337 Gene3D G3DSA:2.40.50.180 48 164 7.7E-32 T 14-10-2018 RY45_19840 d14839aee4ba84317b23faf014c63be2 337 Pfam PF01584 CheW-like domain 41 166 6.6E-33 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_19840 d14839aee4ba84317b23faf014c63be2 337 SMART SM00260 22 164 1.9E-26 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_19840 d14839aee4ba84317b23faf014c63be2 337 Gene3D G3DSA:3.40.50.2300 192 327 2.7E-29 T 14-10-2018 RY45_19840 d14839aee4ba84317b23faf014c63be2 337 PIRSF PIRSF002867 2 329 1.6E-109 T 14-10-2018 IPR024181 Chemotaxis response regulator CheV RY45_19840 d14839aee4ba84317b23faf014c63be2 337 Gene3D G3DSA:2.30.30.40 41 158 7.7E-32 T 14-10-2018 RY45_19840 d14839aee4ba84317b23faf014c63be2 337 SUPERFAMILY SSF50341 12 169 7.59E-34 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_19840 d14839aee4ba84317b23faf014c63be2 337 Pfam PF00072 Response regulator receiver domain 199 314 4.2E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_19840 d14839aee4ba84317b23faf014c63be2 337 SMART SM00448 197 322 5.4E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_19840 d14839aee4ba84317b23faf014c63be2 337 SUPERFAMILY SSF52172 197 313 5.69E-29 T 14-10-2018 IPR011006 CheY-like superfamily RY45_08570 11e3c27482d5148eef1d2fb8d89040bb 212 Gene3D G3DSA:3.40.50.170 2 212 2.9E-85 T 14-10-2018 RY45_08570 11e3c27482d5148eef1d2fb8d89040bb 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 14-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_08570 11e3c27482d5148eef1d2fb8d89040bb 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 192 1.4E-76 T 14-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 RY45_08570 11e3c27482d5148eef1d2fb8d89040bb 212 Pfam PF00551 Formyl transferase 2 182 1.5E-62 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_08570 11e3c27482d5148eef1d2fb8d89040bb 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 31.28 T 14-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 RY45_08570 11e3c27482d5148eef1d2fb8d89040bb 212 SUPERFAMILY SSF53328 2 201 7.72E-66 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RY45_14650 66d94ae124c6f66d168d99331bf3e9a9 242 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 32 229 7.6E-45 T 14-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 RY45_14650 66d94ae124c6f66d168d99331bf3e9a9 242 Gene3D G3DSA:3.40.190.10 104 204 2.1E-61 T 14-10-2018 RY45_14650 66d94ae124c6f66d168d99331bf3e9a9 242 Pfam PF13531 Bacterial extracellular solute-binding protein 28 238 2.6E-30 T 14-10-2018 RY45_14650 66d94ae124c6f66d168d99331bf3e9a9 242 PIRSF PIRSF004846 1 242 8.2E-36 T 14-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 RY45_14650 66d94ae124c6f66d168d99331bf3e9a9 242 Gene3D G3DSA:3.40.190.10 31 238 2.1E-61 T 14-10-2018 RY45_14650 66d94ae124c6f66d168d99331bf3e9a9 242 SUPERFAMILY SSF53850 25 240 1.45E-45 T 14-10-2018 RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 Gene3D G3DSA:1.20.1560.10 1 328 1.9E-82 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 SUPERFAMILY SSF90123 11 327 1.01E-74 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 SMART SM00382 368 555 2.5E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 Gene3D G3DSA:3.40.50.300 329 581 3.0E-96 T 14-10-2018 RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 13 581 2.5E-239 T 14-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 SUPERFAMILY SSF52540 332 579 4.79E-94 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 Pfam PF00005 ABC transporter 359 509 9.7E-36 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 Pfam PF00664 ABC transporter transmembrane region 36 297 2.6E-54 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RY45_14590 b6077d3bac0f80331e7659dcb2aaaea5 589 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_07625 ae78350acb3336a6eb5fe834ce043dcd 391 Gene3D G3DSA:1.10.150.130 83 181 5.3E-16 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal RY45_07625 ae78350acb3336a6eb5fe834ce043dcd 391 Pfam PF12167 Arm DNA-binding domain 8 72 1.5E-22 T 14-10-2018 IPR022000 Min27-like integrase, DNA-binding domain RY45_07625 ae78350acb3336a6eb5fe834ce043dcd 391 Gene3D G3DSA:1.10.443.10 193 382 1.4E-31 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_07625 ae78350acb3336a6eb5fe834ce043dcd 391 Pfam PF00589 Phage integrase family 198 367 2.2E-15 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_07625 ae78350acb3336a6eb5fe834ce043dcd 391 SUPERFAMILY SSF56349 86 373 9.22E-51 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_07625 ae78350acb3336a6eb5fe834ce043dcd 391 Pfam PF13102 Phage integrase SAM-like domain 86 172 1.1E-6 T 14-10-2018 IPR025269 Phage integrase SAM-like domain RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 PIRSF PIRSF001529 1 431 3.0E-174 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 Gene3D G3DSA:3.30.930.10 105 430 1.2E-116 T 14-10-2018 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 SUPERFAMILY SSF55681 116 427 8.29E-98 T 14-10-2018 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 SUPERFAMILY SSF46589 1 112 9.42E-25 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 429 39.64 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 342 358 7.4E-35 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 273 285 7.4E-35 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 285 298 7.4E-35 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 325 338 7.4E-35 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 PRINTS PR00981 Seryl-tRNA synthetase signature 360 376 7.4E-35 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 424 2.6E-166 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 233 407 1.5E-33 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 Gene3D G3DSA:1.10.287.40 1 104 3.1E-18 T 14-10-2018 RY45_10045 e93706aa4669bff3f241c6a41a3fcb7f 431 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 3.2E-27 T 14-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 Pfam PF01514 Secretory protein of YscJ/FliF family 47 236 6.2E-51 T 14-10-2018 IPR006182 Secretory protein YscJ/FliF RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 PRINTS PR01009 Flagellar M-ring protein signature 363 387 5.0E-21 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 PRINTS PR01009 Flagellar M-ring protein signature 212 230 5.0E-21 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 PRINTS PR01009 Flagellar M-ring protein signature 282 300 5.0E-21 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 PRINTS PR01009 Flagellar M-ring protein signature 170 184 5.0E-21 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 PRINTS PR01009 Flagellar M-ring protein signature 138 156 5.0E-21 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 Pfam PF08345 Flagellar M-ring protein C-terminal 269 439 3.5E-45 T 14-10-2018 IPR013556 Flagellar M-ring C-terminal RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 PIRSF PIRSF004862 20 569 3.0E-127 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 23 567 3.2E-75 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RY45_07195 e7b0d65c1a50a320b60713589ee4ee04 570 Gene3D G3DSA:3.30.300.30 139 237 2.8E-6 T 14-10-2018 RY45_11645 1ee5e506ea70d31c7e5b2f88c0486d19 397 SUPERFAMILY SSF103473 3 377 6.93E-49 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_11645 1ee5e506ea70d31c7e5b2f88c0486d19 397 Pfam PF07690 Major Facilitator Superfamily 9 321 4.3E-39 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_11645 1ee5e506ea70d31c7e5b2f88c0486d19 397 Gene3D G3DSA:1.20.1720.10 5 379 2.1E-64 T 14-10-2018 RY45_19130 357112d4df91b4b6cc16724e8088cd1a 456 SUPERFAMILY SSF140931 165 358 1.83E-24 T 14-10-2018 IPR036597 Fido-like domain superfamily RY45_19130 357112d4df91b4b6cc16724e8088cd1a 456 Gene3D G3DSA:1.10.3290.10 109 367 5.1E-45 T 14-10-2018 IPR036597 Fido-like domain superfamily RY45_19130 357112d4df91b4b6cc16724e8088cd1a 456 Pfam PF02661 Fic/DOC family 186 297 4.1E-18 T 14-10-2018 IPR003812 Fido domain RY45_05970 59afcc2c6c20feb9ad798cf742c644e0 1402 Pfam PF13332 Haemagluttinin repeat 675 755 2.4E-11 T 14-10-2018 IPR025157 Hemagglutinin repeat RY45_05970 59afcc2c6c20feb9ad798cf742c644e0 1402 Pfam PF13332 Haemagluttinin repeat 541 595 1.0E-4 T 14-10-2018 IPR025157 Hemagglutinin repeat RY45_05970 59afcc2c6c20feb9ad798cf742c644e0 1402 Pfam PF13332 Haemagluttinin repeat 609 670 0.0027 T 14-10-2018 IPR025157 Hemagglutinin repeat RY45_05970 59afcc2c6c20feb9ad798cf742c644e0 1402 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 393 432 9.6E-5 T 14-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat RY45_05970 59afcc2c6c20feb9ad798cf742c644e0 1402 Pfam PF04830 Possible hemagglutinin (DUF637) 869 1043 9.0E-33 T 14-10-2018 IPR006915 Domain of unknown function DUF637, haemagglutinin putative RY45_09800 0940d57fd54cff7b8190b33c5abcee3c 241 Gene3D G3DSA:3.40.109.10 1 240 1.4E-72 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RY45_09800 0940d57fd54cff7b8190b33c5abcee3c 241 PIRSF PIRSF005426 1 241 2.2E-84 T 14-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 RY45_09800 0940d57fd54cff7b8190b33c5abcee3c 241 SUPERFAMILY SSF55469 1 241 4.06E-72 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RY45_09800 0940d57fd54cff7b8190b33c5abcee3c 241 Pfam PF00881 Nitroreductase family 8 159 2.7E-19 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RY45_19215 a49b47b3427d8dd657ed93f145e914a0 62 Pfam PF02599 Global regulator protein family 1 52 2.6E-27 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RY45_19215 a49b47b3427d8dd657ed93f145e914a0 62 Gene3D G3DSA:3.30.70.1680 1 58 2.4E-30 T 14-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 RY45_19215 a49b47b3427d8dd657ed93f145e914a0 62 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 59 17.231 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RY45_19215 a49b47b3427d8dd657ed93f145e914a0 62 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 55 2.9E-30 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RY45_19215 a49b47b3427d8dd657ed93f145e914a0 62 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 4.0E-20 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RY45_19215 a49b47b3427d8dd657ed93f145e914a0 62 SUPERFAMILY SSF117130 1 54 3.92E-21 T 14-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 RY45_20945 0d3e4f8fc652ea5da6c781a396ea0edc 356 Pfam PF02733 Dak1 domain 18 351 1.2E-123 T 14-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RY45_20945 0d3e4f8fc652ea5da6c781a396ea0edc 356 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 6.3E-141 T 14-10-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00561+2.7.1.121 RY45_20945 0d3e4f8fc652ea5da6c781a396ea0edc 356 SUPERFAMILY SSF82549 11 354 2.22E-123 T 14-10-2018 RY45_20945 0d3e4f8fc652ea5da6c781a396ea0edc 356 Gene3D G3DSA:3.40.50.10440 11 183 9.2E-61 T 14-10-2018 RY45_20945 0d3e4f8fc652ea5da6c781a396ea0edc 356 Gene3D G3DSA:3.30.1180.20 184 356 1.1E-59 T 14-10-2018 RY45_10360 6b230332094836970f354cc8e13caea4 151 Pfam PF03692 Putative zinc- or iron-chelating domain 30 98 5.5E-9 T 14-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein RY45_10360 6b230332094836970f354cc8e13caea4 151 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 8 151 41.17 T 14-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 RY45_10360 6b230332094836970f354cc8e13caea4 151 PIRSF PIRSF006173 4 151 6.9E-66 T 14-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 RY45_13195 0d691efde7feda371d234b37e1c53dda 161 Pfam PF03350 Uncharacterized protein family, UPF0114 10 123 2.1E-20 T 14-10-2018 IPR005134 Uncharacterised protein family UPF0114 RY45_13195 0d691efde7feda371d234b37e1c53dda 161 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 161 32.38 T 14-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria RY45_11080 83fd0f9f7677869b4b0062fce8dc1e21 174 Pfam PF01713 Smr domain 96 170 6.8E-19 T 14-10-2018 IPR002625 Smr domain RY45_11080 83fd0f9f7677869b4b0062fce8dc1e21 174 Gene3D G3DSA:3.30.1370.110 48 174 2.1E-28 T 14-10-2018 RY45_11080 83fd0f9f7677869b4b0062fce8dc1e21 174 SMART SM00463 93 171 3.9E-18 T 14-10-2018 IPR002625 Smr domain RY45_11080 83fd0f9f7677869b4b0062fce8dc1e21 174 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 172 36.748 T 14-10-2018 IPR022990 Uncharacterised protein family UPF0115 RY45_11080 83fd0f9f7677869b4b0062fce8dc1e21 174 SUPERFAMILY SSF160443 93 170 3.66E-11 T 14-10-2018 IPR036063 Smr domain superfamily RY45_06125 09ad433ab1aca281c2baaecc0d39f21c 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 29.417 T 14-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 RY45_06125 09ad433ab1aca281c2baaecc0d39f21c 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 196 3.4E-104 T 14-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 RY45_06125 09ad433ab1aca281c2baaecc0d39f21c 198 PIRSF PIRSF006102 1 198 4.1E-65 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_06125 09ad433ab1aca281c2baaecc0d39f21c 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 6.1E-60 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 Hamap MF_00190 Cardiolipin synthase A [clsA]. 11 493 50.855 T 14-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 Gene3D G3DSA:3.30.870.10 314 491 2.4E-28 T 14-10-2018 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 SUPERFAMILY SSF56024 281 479 1.21E-42 T 14-10-2018 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 17 493 8.1E-128 T 14-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 SMART SM00155 228 255 1.5E-5 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 SMART SM00155 406 433 9.9E-5 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 Gene3D G3DSA:3.30.870.10 124 313 3.6E-36 T 14-10-2018 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 Pfam PF13091 PLD-like domain 143 256 8.6E-14 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 Pfam PF13091 PLD-like domain 336 457 9.9E-25 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RY45_06970 e46b5a6eb0afca0c9c97e659a105a9c0 493 SUPERFAMILY SSF56024 99 322 3.4E-50 T 14-10-2018 RY45_07205 7f60493f83c8ecc68315fb27cd8058e4 268 Pfam PF02108 Flagellar assembly protein FliH 126 253 2.6E-31 T 14-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RY45_07205 7f60493f83c8ecc68315fb27cd8058e4 268 PRINTS PR01003 Flagellar assembly protein FliH signature 218 234 1.5E-11 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_07205 7f60493f83c8ecc68315fb27cd8058e4 268 PRINTS PR01003 Flagellar assembly protein FliH signature 86 108 1.5E-11 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_07205 7f60493f83c8ecc68315fb27cd8058e4 268 PRINTS PR01003 Flagellar assembly protein FliH signature 128 147 1.5E-11 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_07205 7f60493f83c8ecc68315fb27cd8058e4 268 PRINTS PR01003 Flagellar assembly protein FliH signature 148 165 1.5E-11 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_07205 7f60493f83c8ecc68315fb27cd8058e4 268 PRINTS PR01003 Flagellar assembly protein FliH signature 109 127 1.5E-11 T 14-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RY45_11695 162db77c27821337bbb678a22a3e5eb1 211 Gene3D G3DSA:1.20.1050.10 88 204 1.7E-19 T 14-10-2018 RY45_11695 162db77c27821337bbb678a22a3e5eb1 211 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 1.1E-18 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_11695 162db77c27821337bbb678a22a3e5eb1 211 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 192 3.7E-8 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal RY45_11695 162db77c27821337bbb678a22a3e5eb1 211 Gene3D G3DSA:3.40.30.10 1 87 1.8E-28 T 14-10-2018 RY45_11695 162db77c27821337bbb678a22a3e5eb1 211 SUPERFAMILY SSF52833 1 81 4.17E-25 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_11695 162db77c27821337bbb678a22a3e5eb1 211 SUPERFAMILY SSF47616 77 203 6.54E-23 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_00580 5f4e76c894ff4c8dd37cb40b82e645fd 144 Pfam PF05099 Tellurite resistance protein TerB 11 143 1.6E-15 T 14-10-2018 IPR007791 Co-chaperone DjlA, N-terminal RY45_00580 5f4e76c894ff4c8dd37cb40b82e645fd 144 SUPERFAMILY SSF158682 3 143 6.8E-18 T 14-10-2018 IPR029024 TerB-like RY45_00580 5f4e76c894ff4c8dd37cb40b82e645fd 144 Gene3D G3DSA:1.10.3680.10 1 144 2.0E-35 T 14-10-2018 IPR029024 TerB-like RY45_21900 63d2cd70b40f17b68b9a6ac3293da1ac 482 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 360 480 9.3E-32 T 14-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain RY45_21900 63d2cd70b40f17b68b9a6ac3293da1ac 482 Gene3D G3DSA:2.60.40.10 362 482 6.7E-35 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_21900 63d2cd70b40f17b68b9a6ac3293da1ac 482 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 278 289 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_21900 63d2cd70b40f17b68b9a6ac3293da1ac 482 Pfam PF12801 4Fe-4S binding domain 101 139 3.0E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_21900 63d2cd70b40f17b68b9a6ac3293da1ac 482 Pfam PF13746 4Fe-4S dicluster domain 226 330 1.8E-41 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_21900 63d2cd70b40f17b68b9a6ac3293da1ac 482 SUPERFAMILY SSF54862 111 361 6.58E-32 T 14-10-2018 RY45_21900 63d2cd70b40f17b68b9a6ac3293da1ac 482 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 47 461 3.0E-170 T 14-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 RY45_05930 e95fef341217edec4de1999e9009fcef 549 Gene3D G3DSA:1.20.1270.20 1 138 2.4E-38 T 14-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 RY45_05930 e95fef341217edec4de1999e9009fcef 549 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 547 1.4E-225 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 RY45_05930 e95fef341217edec4de1999e9009fcef 549 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 548 20.725 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 RY45_05930 e95fef341217edec4de1999e9009fcef 549 Gene3D G3DSA:1.20.1270.20 148 231 1.6E-24 T 14-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 RY45_05930 e95fef341217edec4de1999e9009fcef 549 Pfam PF03063 Prismane/CO dehydrogenase family 1 543 2.5E-162 T 14-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 RY45_05930 e95fef341217edec4de1999e9009fcef 549 Gene3D G3DSA:3.40.50.2030 233 378 6.2E-60 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 RY45_05930 e95fef341217edec4de1999e9009fcef 549 SUPERFAMILY SSF56821 1 547 1.16E-191 T 14-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 RY45_05930 e95fef341217edec4de1999e9009fcef 549 Gene3D G3DSA:3.40.50.2030 379 547 3.9E-61 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 RY45_05930 e95fef341217edec4de1999e9009fcef 549 PIRSF PIRSF000076 1 549 1.4E-238 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 RY45_11320 5040dad577be3f1818f2fe702e51a2d6 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 30.949 T 14-10-2018 IPR023064 D-ribose pyranase GO:0016872 RY45_11320 5040dad577be3f1818f2fe702e51a2d6 139 Gene3D G3DSA:3.40.1650.10 8 136 3.0E-37 T 14-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 RY45_11320 5040dad577be3f1818f2fe702e51a2d6 139 SUPERFAMILY SSF102546 1 139 3.4E-40 T 14-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 RY45_11320 5040dad577be3f1818f2fe702e51a2d6 139 Pfam PF05025 RbsD / FucU transport protein family 1 137 3.0E-43 T 14-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 RY45_11780 f7d1e9a4068a0662503c9f7bcfe8990c 562 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 66 227 4.4E-10 T 14-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like RY45_07320 599127341e2deb1d1d880f737a332ffc 290 Pfam PF01584 CheW-like domain 151 278 5.8E-13 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_07320 599127341e2deb1d1d880f737a332ffc 290 SUPERFAMILY SSF50341 147 278 3.27E-15 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_07320 599127341e2deb1d1d880f737a332ffc 290 PIRSF PIRSF020479 4 289 1.6E-75 T 14-10-2018 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like RY45_07320 599127341e2deb1d1d880f737a332ffc 290 SMART SM00260 147 278 2.0E-4 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_15430 1f858c86c7c866f94c28eef49240d116 368 SUPERFAMILY SSF51569 9 348 7.75E-120 T 14-10-2018 RY45_15430 1f858c86c7c866f94c28eef49240d116 368 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 349 1.1E-146 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RY45_15430 1f858c86c7c866f94c28eef49240d116 368 Gene3D G3DSA:3.20.20.70 4 350 6.3E-142 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_15430 1f858c86c7c866f94c28eef49240d116 368 Pfam PF00793 DAHP synthetase I family 43 338 1.9E-91 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_15430 1f858c86c7c866f94c28eef49240d116 368 PIRSF PIRSF001361 3 352 1.9E-145 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RY45_06400 393fcace2d46ee09df41b11822008016 473 Pfam PF01554 MatE 22 185 1.7E-22 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_06400 393fcace2d46ee09df41b11822008016 473 Pfam PF01554 MatE 265 408 2.8E-14 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_02825 f3937983e178c8a52dd91d18606b9264 248 Pfam PF00106 short chain dehydrogenase 2 186 1.8E-52 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 Gene3D G3DSA:3.40.50.720 1 235 4.8E-67 T 14-10-2018 RY45_02825 f3937983e178c8a52dd91d18606b9264 248 SUPERFAMILY SSF51735 2 231 5.16E-62 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_02825 f3937983e178c8a52dd91d18606b9264 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.5E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.5E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.5E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.6E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 1.6E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.6E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.6E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.6E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02825 f3937983e178c8a52dd91d18606b9264 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.6E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05715 1f5175ec00a03198568f203d6e61fd76 124 Gene3D G3DSA:2.60.120.10 8 120 4.7E-6 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_05715 1f5175ec00a03198568f203d6e61fd76 124 SUPERFAMILY SSF51182 23 122 6.03E-10 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_10235 2b3b0bd7c945671ff18a25e011aaa017 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.0E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10235 2b3b0bd7c945671ff18a25e011aaa017 301 Gene3D G3DSA:3.40.190.10 165 266 7.7E-59 T 14-10-2018 RY45_10235 2b3b0bd7c945671ff18a25e011aaa017 301 SUPERFAMILY SSF53850 89 298 6.83E-40 T 14-10-2018 RY45_10235 2b3b0bd7c945671ff18a25e011aaa017 301 Gene3D G3DSA:1.10.10.10 2 89 7.5E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10235 2b3b0bd7c945671ff18a25e011aaa017 301 Gene3D G3DSA:3.40.190.10 92 293 7.7E-59 T 14-10-2018 RY45_10235 2b3b0bd7c945671ff18a25e011aaa017 301 Pfam PF03466 LysR substrate binding domain 88 295 1.5E-37 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_10235 2b3b0bd7c945671ff18a25e011aaa017 301 SUPERFAMILY SSF46785 3 83 2.34E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08035 60e1245b968637d828423204b6005a4b 402 Gene3D G3DSA:1.20.1530.20 6 400 7.2E-14 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily RY45_08035 60e1245b968637d828423204b6005a4b 402 Pfam PF00999 Sodium/hydrogen exchanger family 12 396 5.3E-40 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RY45_00065 c3182ee1a89d5da2f7621f2b943d373e 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 5.8E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_00065 c3182ee1a89d5da2f7621f2b943d373e 227 Gene3D G3DSA:1.10.10.10 130 226 5.9E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00065 c3182ee1a89d5da2f7621f2b943d373e 227 SUPERFAMILY SSF52172 1 123 9.39E-37 T 14-10-2018 IPR011006 CheY-like superfamily RY45_00065 c3182ee1a89d5da2f7621f2b943d373e 227 SMART SM00448 2 112 5.0E-38 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00065 c3182ee1a89d5da2f7621f2b943d373e 227 SMART SM00862 148 224 5.6E-18 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RY45_00065 c3182ee1a89d5da2f7621f2b943d373e 227 Pfam PF00072 Response regulator receiver domain 4 113 1.1E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00065 c3182ee1a89d5da2f7621f2b943d373e 227 SUPERFAMILY SSF46894 134 225 2.13E-23 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_00065 c3182ee1a89d5da2f7621f2b943d373e 227 Gene3D G3DSA:3.40.50.2300 1 129 5.5E-33 T 14-10-2018 RY45_03335 e8b40337a2d5ff81b9b54f21a969bb06 251 ProSitePatterns PS01142 Bacterial type II secretion system protein N signature. 45 67 - T 14-10-2018 IPR000645 Type II secretion system protein N, conserved site GO:0008565|GO:0015627|GO:0015628 RY45_03335 e8b40337a2d5ff81b9b54f21a969bb06 251 Pfam PF01203 Type II secretion system (T2SS), protein N 37 246 2.5E-54 T 14-10-2018 IPR022792 Type II secretion system, protein N RY45_06755 50c32bdaffc7c3ba8608bb4a6cda3508 248 Pfam PF00005 ABC transporter 23 171 4.3E-37 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_06755 50c32bdaffc7c3ba8608bb4a6cda3508 248 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_06755 50c32bdaffc7c3ba8608bb4a6cda3508 248 SUPERFAMILY SSF52540 7 241 8.3E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06755 50c32bdaffc7c3ba8608bb4a6cda3508 248 SMART SM00382 32 219 7.1E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_06755 50c32bdaffc7c3ba8608bb4a6cda3508 248 Gene3D G3DSA:3.40.50.300 5 248 3.0E-77 T 14-10-2018 RY45_06755 50c32bdaffc7c3ba8608bb4a6cda3508 248 PIRSF PIRSF039085 4 247 3.3E-107 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RY45_02475 153927a8936c321e7ca1182316c60634 403 SUPERFAMILY SSF55874 283 388 4.45E-10 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_02475 153927a8936c321e7ca1182316c60634 403 SMART SM00388 212 278 8.7E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_02475 153927a8936c321e7ca1182316c60634 403 Gene3D G3DSA:3.30.565.10 285 401 8.5E-7 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_02475 153927a8936c321e7ca1182316c60634 403 Gene3D G3DSA:1.10.287.130 164 278 6.2E-10 T 14-10-2018 RY45_02475 153927a8936c321e7ca1182316c60634 403 SUPERFAMILY SSF47384 200 276 1.2E-8 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 SUPERFAMILY SSF51735 6 181 1.22E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 162 1.2E-47 T 14-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 191 212 - T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 Gene3D G3DSA:3.40.50.720 2 190 1.2E-51 T 14-10-2018 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 Gene3D G3DSA:1.10.1040.10 192 334 9.0E-52 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 SUPERFAMILY SSF48179 183 334 2.55E-55 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 176 200 1.0E-44 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 59 86 1.0E-44 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 135 155 1.0E-44 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 9 26 1.0E-44 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 201 225 1.0E-44 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 241 258 1.0E-44 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 5 325 37.279 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 PIRSF PIRSF000114 1 334 1.8E-97 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_01775 4f230e26bd4744a1823c51b4f3033aea 334 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 183 322 9.1E-51 T 14-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RY45_09670 9d846f049856b57abdc396cbb5f4f2fb 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 2 152 27.213 T 14-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09670 9d846f049856b57abdc396cbb5f4f2fb 180 Gene3D G3DSA:3.30.70.3270 33 172 2.1E-41 T 14-10-2018 RY45_09670 9d846f049856b57abdc396cbb5f4f2fb 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 3.6E-12 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_09670 9d846f049856b57abdc396cbb5f4f2fb 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 2.7E-50 T 14-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09670 9d846f049856b57abdc396cbb5f4f2fb 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_09670 9d846f049856b57abdc396cbb5f4f2fb 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_09670 9d846f049856b57abdc396cbb5f4f2fb 180 SUPERFAMILY SSF54862 33 154 1.72E-27 T 14-10-2018 RY45_08755 fac55db72168a8478dcb225a5385ba51 298 Gene3D G3DSA:3.40.800.20 2 295 2.8E-59 T 14-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RY45_08755 fac55db72168a8478dcb225a5385ba51 298 SUPERFAMILY SSF52768 2 279 2.21E-75 T 14-10-2018 IPR023696 Ureohydrolase domain superfamily RY45_08755 fac55db72168a8478dcb225a5385ba51 298 PRINTS PR01270 Histone deacetylase superfamily signature 148 163 7.5E-16 T 14-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RY45_08755 fac55db72168a8478dcb225a5385ba51 298 PRINTS PR01270 Histone deacetylase superfamily signature 114 137 7.5E-16 T 14-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RY45_08755 fac55db72168a8478dcb225a5385ba51 298 PRINTS PR01270 Histone deacetylase superfamily signature 222 232 7.5E-16 T 14-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RY45_08755 fac55db72168a8478dcb225a5385ba51 298 Pfam PF00850 Histone deacetylase domain 42 277 2.1E-46 T 14-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RY45_19800 3bd5ad0be9da0355562c11b5095b9796 195 Pfam PF14163 Super-infection exclusion protein B 18 164 1.6E-41 T 14-10-2018 IPR025982 Superinfection exclusion protein B RY45_10145 8321ae9c10a46fce799df893222dde2a 162 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 104 121 4.1E-9 T 14-10-2018 RY45_10145 8321ae9c10a46fce799df893222dde2a 162 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 142 162 4.1E-9 T 14-10-2018 RY45_10145 8321ae9c10a46fce799df893222dde2a 162 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 122 141 4.1E-9 T 14-10-2018 RY45_10145 8321ae9c10a46fce799df893222dde2a 162 SUPERFAMILY SSF103088 45 159 6.41E-32 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_10145 8321ae9c10a46fce799df893222dde2a 162 Pfam PF00691 OmpA family 58 153 2.1E-20 T 14-10-2018 IPR006665 OmpA-like domain RY45_10145 8321ae9c10a46fce799df893222dde2a 162 PRINTS PR01021 OMPA domain signature 59 81 2.9E-9 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_10145 8321ae9c10a46fce799df893222dde2a 162 PRINTS PR01021 OMPA domain signature 89 104 2.9E-9 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_10145 8321ae9c10a46fce799df893222dde2a 162 PRINTS PR01021 OMPA domain signature 104 120 2.9E-9 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_10145 8321ae9c10a46fce799df893222dde2a 162 Gene3D G3DSA:3.30.1330.60 25 162 3.1E-41 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_20370 28c9164dd7c0c9715e8aa72615947b5f 277 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 7 275 5.3E-94 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RY45_20370 28c9164dd7c0c9715e8aa72615947b5f 277 Gene3D G3DSA:3.40.1010.10 1 113 4.9E-45 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RY45_20370 28c9164dd7c0c9715e8aa72615947b5f 277 SUPERFAMILY SSF53790 5 224 1.31E-81 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RY45_20370 28c9164dd7c0c9715e8aa72615947b5f 277 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 6 226 37.308 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RY45_20370 28c9164dd7c0c9715e8aa72615947b5f 277 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 198 1.1E-30 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RY45_20370 28c9164dd7c0c9715e8aa72615947b5f 277 Gene3D G3DSA:3.30.950.10 114 233 3.8E-41 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RY45_20370 28c9164dd7c0c9715e8aa72615947b5f 277 PIRSF PIRSF005917 1 277 2.4E-102 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RY45_20370 28c9164dd7c0c9715e8aa72615947b5f 277 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 84 95 - T 14-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 RY45_20100 c2ff532160b097eafd7b309885c789bd 250 Pfam PF08478 POTRA domain, FtsQ-type 45 114 5.8E-17 T 14-10-2018 IPR013685 POTRA domain, FtsQ-type RY45_20100 c2ff532160b097eafd7b309885c789bd 250 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 14 236 20.144 T 14-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 RY45_20100 c2ff532160b097eafd7b309885c789bd 250 Gene3D G3DSA:3.40.50.11690 116 241 1.9E-36 T 14-10-2018 RY45_20100 c2ff532160b097eafd7b309885c789bd 250 Gene3D G3DSA:3.10.20.310 46 114 3.4E-24 T 14-10-2018 RY45_20100 c2ff532160b097eafd7b309885c789bd 250 Pfam PF03799 Cell division protein FtsQ 118 228 2.6E-20 T 14-10-2018 IPR005548 Cell division protein FtsQ/DivIB RY45_19295 485ce4e75faf5a07c613b30a7667076f 224 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 62 167 5.5E-13 T 14-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted RY45_19295 485ce4e75faf5a07c613b30a7667076f 224 Gene3D G3DSA:3.10.620.30 28 218 2.6E-64 T 14-10-2018 RY45_18135 7d25760d307f30e7e6d9c1c0acd340ff 133 Gene3D G3DSA:3.10.180.10 11 130 4.9E-33 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_18135 7d25760d307f30e7e6d9c1c0acd340ff 133 SUPERFAMILY SSF54593 6 130 1.21E-32 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_18135 7d25760d307f30e7e6d9c1c0acd340ff 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 128 3.0E-21 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_18730 3b84a1692621a61f70bf36c76d208ce3 235 SUPERFAMILY SSF110849 29 224 6.8E-60 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RY45_18730 3b84a1692621a61f70bf36c76d208ce3 235 Gene3D G3DSA:3.90.1530.10 24 153 7.1E-37 T 14-10-2018 RY45_18730 3b84a1692621a61f70bf36c76d208ce3 235 PIRSF PIRSF029669 21 227 1.0E-63 T 14-10-2018 IPR016932 Uncharacterised conserved protein UCP029669 RY45_18730 3b84a1692621a61f70bf36c76d208ce3 235 Pfam PF08857 Putative ParB-like nuclease 32 186 1.1E-49 T 14-10-2018 IPR014956 Putative ParB-like nuclease RY45_18730 3b84a1692621a61f70bf36c76d208ce3 235 Gene3D G3DSA:1.10.8.10 154 216 3.1E-6 T 14-10-2018 RY45_06730 95d37696d1619f990e4a92bf342ce74c 337 Pfam PF01061 ABC-2 type transporter 138 302 4.2E-31 T 14-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RY45_19050 9eaee0d4e2d6ae305aa403dcb2b6e894 69 SUPERFAMILY SSF57716 35 67 1.34E-7 T 14-10-2018 RY45_19050 9eaee0d4e2d6ae305aa403dcb2b6e894 69 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 33 66 2.0E-12 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RY45_19050 9eaee0d4e2d6ae305aa403dcb2b6e894 69 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 36 60 - T 14-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RY45_19050 9eaee0d4e2d6ae305aa403dcb2b6e894 69 Gene3D G3DSA:1.20.120.910 1 67 1.4E-17 T 14-10-2018 RY45_19050 9eaee0d4e2d6ae305aa403dcb2b6e894 69 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 2 65 2.9E-20 T 14-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type RY45_07235 5958421242972af73523d99565285370 130 SUPERFAMILY SSF101801 48 128 3.66E-24 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_07235 5958421242972af73523d99565285370 130 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 50 120 2.4E-24 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) RY45_07235 5958421242972af73523d99565285370 130 PRINTS PR00956 Flagellar motor switch protein FliN signature 50 66 2.7E-28 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RY45_07235 5958421242972af73523d99565285370 130 PRINTS PR00956 Flagellar motor switch protein FliN signature 67 83 2.7E-28 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RY45_07235 5958421242972af73523d99565285370 130 PRINTS PR00956 Flagellar motor switch protein FliN signature 83 96 2.7E-28 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RY45_07235 5958421242972af73523d99565285370 130 PRINTS PR00956 Flagellar motor switch protein FliN signature 96 111 2.7E-28 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RY45_07235 5958421242972af73523d99565285370 130 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 48 121 9.1E-33 T 14-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 RY45_07235 5958421242972af73523d99565285370 130 Gene3D G3DSA:2.30.330.10 38 130 4.7E-33 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_09105 f6ce86e46fb9ae08f11e6b637f3b2689 720 Gene3D G3DSA:2.170.130.10 53 173 3.2E-32 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_09105 f6ce86e46fb9ae08f11e6b637f3b2689 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 159 1.3E-25 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_09105 f6ce86e46fb9ae08f11e6b637f3b2689 720 SUPERFAMILY SSF56935 36 717 1.54E-104 T 14-10-2018 RY45_09105 f6ce86e46fb9ae08f11e6b637f3b2689 720 Gene3D G3DSA:2.40.170.20 177 717 3.4E-72 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_09105 f6ce86e46fb9ae08f11e6b637f3b2689 720 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 44 - T 14-10-2018 IPR010916 TonB box, conserved site RY45_09105 f6ce86e46fb9ae08f11e6b637f3b2689 720 Pfam PF00593 TonB dependent receptor 243 716 2.3E-45 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_09105 f6ce86e46fb9ae08f11e6b637f3b2689 720 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 38 717 3.8E-100 T 14-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 RY45_09105 f6ce86e46fb9ae08f11e6b637f3b2689 720 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 37 717 4.2E-104 T 14-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 RY45_03660 2c2ef4e980d0851ad67ffba7a23c39f1 187 Pfam PF07298 NnrU protein 4 185 5.0E-44 T 14-10-2018 IPR009915 NnrU domain RY45_01350 11c842b9d03c05bc154d9be2e512a2b8 278 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 5 278 9.3E-122 T 14-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 RY45_01350 11c842b9d03c05bc154d9be2e512a2b8 278 Gene3D G3DSA:3.40.50.1820 3 278 1.8E-91 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_01350 11c842b9d03c05bc154d9be2e512a2b8 278 Pfam PF00756 Putative esterase 23 273 5.8E-65 T 14-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RY45_01350 11c842b9d03c05bc154d9be2e512a2b8 278 SUPERFAMILY SSF53474 4 278 5.4E-90 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_10650 07aa3047133b68663118af571744962b 217 Pfam PF09335 SNARE associated Golgi protein 49 174 3.1E-23 T 14-10-2018 IPR032816 SNARE associated Golgi protein RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 163 0.0044 T 14-10-2018 RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.0E-31 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.0E-31 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.0E-31 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.0E-31 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 1.0E-31 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.0E-31 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 3.0E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.0E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.0E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 SUPERFAMILY SSF51735 3 224 8.32E-63 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 Gene3D G3DSA:3.40.50.720 1 240 1.7E-72 T 14-10-2018 RY45_02020 af660e48b93b0206ad9bd64ff7e4db41 240 Pfam PF00106 short chain dehydrogenase 6 188 2.0E-52 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_05765 c4d37a4c9b836e0e82746060cd7777bc 645 SMART SM00304 319 372 0.0016 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_05765 c4d37a4c9b836e0e82746060cd7777bc 645 Gene3D G3DSA:1.10.287.950 355 643 1.5E-47 T 14-10-2018 RY45_05765 c4d37a4c9b836e0e82746060cd7777bc 645 SUPERFAMILY SSF58104 377 640 3.92E-47 T 14-10-2018 RY45_05765 c4d37a4c9b836e0e82746060cd7777bc 645 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 457 599 2.2E-29 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05765 c4d37a4c9b836e0e82746060cd7777bc 645 SMART SM00283 387 613 1.9E-26 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_15195 80b850eee1106f2b0199be54d568e514 298 Pfam PF01040 UbiA prenyltransferase family 19 270 1.9E-57 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RY45_15195 80b850eee1106f2b0199be54d568e514 298 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 283 1.2E-89 T 14-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RY45_15195 80b850eee1106f2b0199be54d568e514 298 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 57 79 - T 14-10-2018 IPR030470 UbiA prenyltransferase conserved site RY45_15195 80b850eee1106f2b0199be54d568e514 298 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 285 17.938 T 14-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RY45_15195 80b850eee1106f2b0199be54d568e514 298 Gene3D G3DSA:1.10.357.140 14 175 8.0E-19 T 14-10-2018 RY45_04880 6a5e296e5b1bd63b2213068716c97daf 540 SUPERFAMILY SSF161098 301 529 8.5E-30 T 14-10-2018 IPR035906 MetI-like superfamily RY45_04880 6a5e296e5b1bd63b2213068716c97daf 540 Gene3D G3DSA:1.10.3720.10 16 270 4.6E-39 T 14-10-2018 IPR035906 MetI-like superfamily RY45_04880 6a5e296e5b1bd63b2213068716c97daf 540 Gene3D G3DSA:1.10.3720.10 292 538 2.2E-25 T 14-10-2018 IPR035906 MetI-like superfamily RY45_04880 6a5e296e5b1bd63b2213068716c97daf 540 SUPERFAMILY SSF161098 12 266 6.0E-37 T 14-10-2018 IPR035906 MetI-like superfamily RY45_04880 6a5e296e5b1bd63b2213068716c97daf 540 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 11 529 2.1E-161 T 14-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 RY45_04880 6a5e296e5b1bd63b2213068716c97daf 540 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 260 9.3E-7 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_04880 6a5e296e5b1bd63b2213068716c97daf 540 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 368 529 2.5E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_06455 21db3d5a45a9a898afd885560c8a6228 145 Gene3D G3DSA:2.40.128.460 19 145 7.9E-58 T 14-10-2018 IPR038643 PliI superfamily RY45_06455 21db3d5a45a9a898afd885560c8a6228 145 Pfam PF16743 Periplasmic lysozyme inhibitor of I-type lysozyme 23 142 3.9E-50 T 14-10-2018 IPR031948 Periplasmic lysozyme inhibitor, I-type RY45_20550 7f11a95d9d85131b1d9a3c713e6d2888 259 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 1.2E-101 T 14-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RY45_20550 7f11a95d9d85131b1d9a3c713e6d2888 259 Pfam PF02405 Permease MlaE 44 255 3.9E-77 T 14-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RY45_08615 89fafcb2cdc21870c50c9148a093b049 745 SUPERFAMILY SSF161098 427 534 1.6E-6 T 14-10-2018 IPR035906 MetI-like superfamily RY45_08615 89fafcb2cdc21870c50c9148a093b049 745 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 461 739 7.6E-9 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_08615 89fafcb2cdc21870c50c9148a093b049 745 SUPERFAMILY SSF50978 231 399 1.65E-7 T 14-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 RY45_08615 89fafcb2cdc21870c50c9148a093b049 745 SUPERFAMILY SSF161098 514 731 1.07E-17 T 14-10-2018 IPR035906 MetI-like superfamily RY45_19455 8dcfda046b4de853504977f3d2d15488 207 SUPERFAMILY SSF55811 63 197 1.1E-31 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_19455 8dcfda046b4de853504977f3d2d15488 207 Pfam PF00293 NUDIX domain 69 181 3.2E-19 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_19455 8dcfda046b4de853504977f3d2d15488 207 Gene3D G3DSA:3.90.79.10 43 207 1.2E-37 T 14-10-2018 RY45_19455 8dcfda046b4de853504977f3d2d15488 207 Pfam PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal 6 57 6.2E-15 T 14-10-2018 RY45_08745 be5c6004e574e492d03f7638d9e07ba2 316 PIRSF PIRSF006230 280 315 1500.0 T 14-10-2018 IPR016478 GTPase, MTG1 RY45_08745 be5c6004e574e492d03f7638d9e07ba2 316 PIRSF PIRSF006230 1 277 1.2E-96 T 14-10-2018 IPR016478 GTPase, MTG1 RY45_08745 be5c6004e574e492d03f7638d9e07ba2 316 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 272 7.1E-102 T 14-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis RY45_08745 be5c6004e574e492d03f7638d9e07ba2 316 Gene3D G3DSA:1.10.1580.10 176 265 1.1E-25 T 14-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily RY45_08745 be5c6004e574e492d03f7638d9e07ba2 316 SUPERFAMILY SSF52540 9 207 2.4E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_08745 be5c6004e574e492d03f7638d9e07ba2 316 Pfam PF01926 50S ribosome-binding GTPase 117 206 1.7E-15 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 RY45_08745 be5c6004e574e492d03f7638d9e07ba2 316 Gene3D G3DSA:3.40.50.300 3 171 2.0E-41 T 14-10-2018 RY45_17665 f45bb2ea22764fc891ddb74713ae5277 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 132 338 9.4E-35 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_17665 f45bb2ea22764fc891ddb74713ae5277 341 SUPERFAMILY SSF161098 106 326 3.66E-14 T 14-10-2018 IPR035906 MetI-like superfamily RY45_17665 f45bb2ea22764fc891ddb74713ae5277 341 Gene3D G3DSA:1.10.3720.10 104 331 7.8E-17 T 14-10-2018 IPR035906 MetI-like superfamily RY45_15670 75b2b3e7860074a3feeed44fb989e47d 280 SMART SM00382 25 183 3.4E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15670 75b2b3e7860074a3feeed44fb989e47d 280 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 29 47 3.3E-6 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_15670 75b2b3e7860074a3feeed44fb989e47d 280 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 113 131 3.3E-6 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 RY45_15670 75b2b3e7860074a3feeed44fb989e47d 280 Gene3D G3DSA:3.40.50.300 5 201 5.3E-29 T 14-10-2018 RY45_15670 75b2b3e7860074a3feeed44fb989e47d 280 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 175 1.4E-13 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RY45_15670 75b2b3e7860074a3feeed44fb989e47d 280 SUPERFAMILY SSF52540 13 237 2.13E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06690 854a32ba3be24cddf4059a6474635e52 324 Gene3D G3DSA:3.40.190.10 40 311 8.7E-105 T 14-10-2018 RY45_06690 854a32ba3be24cddf4059a6474635e52 324 Pfam PF12849 PBP superfamily domain 37 294 9.6E-33 T 14-10-2018 IPR024370 PBP domain RY45_06690 854a32ba3be24cddf4059a6474635e52 324 Gene3D G3DSA:3.40.190.10 125 267 8.7E-105 T 14-10-2018 RY45_06690 854a32ba3be24cddf4059a6474635e52 324 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 11 309 2.7E-85 T 14-10-2018 IPR011862 Phosphate binding protein GO:0042301 RY45_06690 854a32ba3be24cddf4059a6474635e52 324 SUPERFAMILY SSF53850 35 320 8.59E-73 T 14-10-2018 RY45_04080 58b9fbd7ee23651f79250e0954a3c07b 149 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 142 4.7E-31 T 14-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 RY45_04080 58b9fbd7ee23651f79250e0954a3c07b 149 SUPERFAMILY SSF55729 1 145 6.71E-28 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_04080 58b9fbd7ee23651f79250e0954a3c07b 149 Pfam PF00583 Acetyltransferase (GNAT) family 24 120 2.5E-12 T 14-10-2018 IPR000182 GNAT domain RY45_04080 58b9fbd7ee23651f79250e0954a3c07b 149 Gene3D G3DSA:3.40.630.30 4 146 4.9E-36 T 14-10-2018 RY45_17115 8c24155662f4f59fb9504191d951dd43 83 PIRSF PIRSF006488 1 82 6.5E-21 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RY45_17115 8c24155662f4f59fb9504191d951dd43 83 Pfam PF02609 Exonuclease VII small subunit 11 62 9.4E-20 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RY45_17115 8c24155662f4f59fb9504191d951dd43 83 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 51 2.0E-12 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RY45_17115 8c24155662f4f59fb9504191d951dd43 83 SUPERFAMILY SSF116842 2 70 3.66E-21 T 14-10-2018 RY45_17115 8c24155662f4f59fb9504191d951dd43 83 Gene3D G3DSA:1.10.287.1040 5 83 3.4E-23 T 14-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 RY45_17115 8c24155662f4f59fb9504191d951dd43 83 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 15.414 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RY45_17115 8c24155662f4f59fb9504191d951dd43 83 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 65 1.7E-22 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RY45_15160 4db7515e15dce3ecafdee712aaa19858 147 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 34 145 1.5E-39 T 14-10-2018 RY45_15160 4db7515e15dce3ecafdee712aaa19858 147 PIRSF PIRSF009103 1 147 2.6E-38 T 14-10-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 RY45_15160 4db7515e15dce3ecafdee712aaa19858 147 SUPERFAMILY SSF89872 27 146 3.66E-34 T 14-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily RY45_15160 4db7515e15dce3ecafdee712aaa19858 147 Gene3D G3DSA:3.40.1420.10 22 147 2.1E-38 T 14-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily RY45_21665 49a2bf8db3eb29d7f0cd7a6f9ac691fd 352 SUPERFAMILY SSF56801 54 337 3.66E-8 T 14-10-2018 RY45_21665 49a2bf8db3eb29d7f0cd7a6f9ac691fd 352 Gene3D G3DSA:3.40.50.12780 4 339 7.6E-19 T 14-10-2018 RY45_21665 49a2bf8db3eb29d7f0cd7a6f9ac691fd 352 Pfam PF04443 Acyl-protein synthetase, LuxE 4 350 9.8E-44 T 14-10-2018 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723 RY45_14160 a51f35369a709c79070aa759ab546ad7 458 PIRSF PIRSF006060 1 453 2.7E-75 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_14160 a51f35369a709c79070aa759ab546ad7 458 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 14-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RY45_14160 a51f35369a709c79070aa759ab546ad7 458 Gene3D G3DSA:1.20.1740.10 9 457 4.7E-61 T 14-10-2018 RY45_14160 a51f35369a709c79070aa759ab546ad7 458 Pfam PF00324 Amino acid permease 18 450 4.0E-117 T 14-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RY45_20365 b4cfe1bab17743771973c057d60f84cf 236 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 166 234 9.7E-14 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) RY45_20365 b4cfe1bab17743771973c057d60f84cf 236 SUPERFAMILY SSF101801 163 235 9.94E-12 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_20365 b4cfe1bab17743771973c057d60f84cf 236 Gene3D G3DSA:2.30.330.10 158 235 7.7E-7 T 14-10-2018 IPR036429 SpoA-like superfamily RY45_00425 fb6c40219729f1cc9088f35ef76cfeef 156 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 129 2.7E-40 T 14-10-2018 IPR009678 Bacteriophage tail completion protein R RY45_08950 bfe9df554545481043ae9681aabd3704 155 Pfam PF14526 Integron-associated effector binding protein 6 148 2.0E-14 T 14-10-2018 IPR029441 Integron-associated effector binding protein RY45_08950 bfe9df554545481043ae9681aabd3704 155 SMART SM00871 3 149 1.7E-16 T 14-10-2018 IPR010499 Bacterial transcription activator, effector binding RY45_08950 bfe9df554545481043ae9681aabd3704 155 Gene3D G3DSA:3.20.80.10 4 151 2.4E-24 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RY45_08950 bfe9df554545481043ae9681aabd3704 155 SUPERFAMILY SSF55136 5 149 8.89E-20 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RY45_00450 89592172cf7c0018f2d937a96818bdf1 121 Pfam PF16931 Putative phage holin 1 121 4.1E-30 T 14-10-2018 IPR032637 Putative phage holin-like RY45_17120 366cb93a68f4d706636ee0bd0a9bec7b 296 Pfam PF00348 Polyprenyl synthetase 31 264 6.3E-58 T 14-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RY45_17120 366cb93a68f4d706636ee0bd0a9bec7b 296 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 97 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site RY45_17120 366cb93a68f4d706636ee0bd0a9bec7b 296 Gene3D G3DSA:1.10.600.10 2 296 4.5E-100 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily RY45_17120 366cb93a68f4d706636ee0bd0a9bec7b 296 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site RY45_17120 366cb93a68f4d706636ee0bd0a9bec7b 296 SUPERFAMILY SSF48576 4 289 3.78E-88 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily RY45_14980 6b527b3aaab88b0ceec32d9ce0d0797b 568 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 362 547 1.4E-35 T 14-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal RY45_14980 6b527b3aaab88b0ceec32d9ce0d0797b 568 Pfam PF15864 Protein glycosylation ligase 155 179 2.6E-10 T 14-10-2018 IPR031726 Protein glycosylation ligase domain RY45_14980 6b527b3aaab88b0ceec32d9ce0d0797b 568 Pfam PF04932 O-Antigen ligase 197 340 1.1E-12 T 14-10-2018 IPR007016 O-antigen ligase-related RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 Pfam PF08220 DeoR-like helix-turn-helix domain 9 60 5.0E-15 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 Pfam PF00455 DeoR C terminal sensor domain 77 233 5.0E-44 T 14-10-2018 IPR014036 DeoR C-terminal sensor domain RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 SMART SM00420 9 61 7.1E-14 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 SUPERFAMILY SSF100950 77 233 9.57E-32 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 14-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 3.7E-5 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 3.7E-5 T 14-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 SMART SM01134 73 234 8.7E-62 T 14-10-2018 RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 Gene3D G3DSA:1.10.10.10 5 99 2.7E-5 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_22090 0ca8b9719ef2fe8c3b47a4e3d569f410 257 SUPERFAMILY SSF46785 7 66 1.16E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_07000 6f5431119fe0e3cf9c7e59a4b8d5f24e 240 SUPERFAMILY SSF56214 14 97 3.92E-20 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RY45_07000 6f5431119fe0e3cf9c7e59a4b8d5f24e 240 SUPERFAMILY SSF56214 105 180 1.19E-20 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RY45_07000 6f5431119fe0e3cf9c7e59a4b8d5f24e 240 Gene3D G3DSA:3.90.470.20 18 105 4.7E-40 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RY45_07000 6f5431119fe0e3cf9c7e59a4b8d5f24e 240 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 106 179 2.5E-13 T 14-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RY45_07000 6f5431119fe0e3cf9c7e59a4b8d5f24e 240 Gene3D G3DSA:3.90.470.20 106 199 4.7E-40 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RY45_02305 cbe5ae892024faf8bee05b99ca6afa9c 161 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 8 153 5.4E-43 T 14-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 RY45_02305 cbe5ae892024faf8bee05b99ca6afa9c 161 PIRSF PIRSF018472 1 161 4.3E-53 T 14-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type RY45_02305 cbe5ae892024faf8bee05b99ca6afa9c 161 Pfam PF04093 rod shape-determining protein MreD 8 154 3.2E-31 T 14-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 RY45_10760 c3a4449230e45622ecedf3fa4e0ac26c 157 Pfam PF14539 Domain of unknown function (DUF4442) 16 108 7.3E-9 T 14-10-2018 IPR027961 Protein of unknown function DUF4442 RY45_10760 c3a4449230e45622ecedf3fa4e0ac26c 157 SUPERFAMILY SSF54637 12 133 2.16E-13 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_10760 c3a4449230e45622ecedf3fa4e0ac26c 157 Gene3D G3DSA:3.10.129.10 2 153 1.6E-23 T 14-10-2018 RY45_04045 3e7143edec58c45f899ee2781596c457 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 96 2.2E-8 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RY45_04045 3e7143edec58c45f899ee2781596c457 325 SUPERFAMILY SSF51735 124 282 2.08E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_04045 3e7143edec58c45f899ee2781596c457 325 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 151 172 - T 14-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RY45_04045 3e7143edec58c45f899ee2781596c457 325 Gene3D G3DSA:3.40.50.720 134 266 4.6E-89 T 14-10-2018 RY45_04045 3e7143edec58c45f899ee2781596c457 325 Gene3D G3DSA:3.90.180.10 13 313 4.6E-89 T 14-10-2018 RY45_04045 3e7143edec58c45f899ee2781596c457 325 Pfam PF13602 Zinc-binding dehydrogenase 193 315 7.1E-22 T 14-10-2018 RY45_04045 3e7143edec58c45f899ee2781596c457 325 SMART SM00829 14 315 2.7E-20 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RY45_04045 3e7143edec58c45f899ee2781596c457 325 SUPERFAMILY SSF50129 2 156 2.43E-30 T 14-10-2018 IPR011032 GroES-like superfamily RY45_02505 b0933fa372f6fadbfb15919933ffabbe 384 SUPERFAMILY SSF56059 1 381 4.24E-82 T 14-10-2018 RY45_02505 b0933fa372f6fadbfb15919933ffabbe 384 SUPERFAMILY SSF52440 171 276 2.79E-34 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RY45_02505 b0933fa372f6fadbfb15919933ffabbe 384 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 382 1.1E-145 T 14-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain RY45_02505 b0933fa372f6fadbfb15919933ffabbe 384 Gene3D G3DSA:3.30.1490.330 260 341 1.8E-23 T 14-10-2018 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 37 54 - T 14-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 132 162 - T 14-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 PIRSF PIRSF001365 1 290 5.2E-91 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 5.2E-29 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 5.2E-29 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 5.2E-29 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 5.2E-29 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 Gene3D G3DSA:3.20.20.70 1 290 3.2E-113 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 SUPERFAMILY SSF51569 2 288 2.51E-101 T 14-10-2018 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 286 62.082 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 286 7.6E-94 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 Pfam PF00701 Dihydrodipicolinate synthetase family 2 286 1.4E-88 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_19655 ef6fe4d101f718b47be86e8e1ddc4438 290 SMART SM01130 1 288 9.8E-140 T 14-10-2018 IPR002220 DapA-like GO:0016829 RY45_20520 d9df1ba8e39530680d9b5da289f1593f 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 4.2E-8 T 14-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RY45_20520 d9df1ba8e39530680d9b5da289f1593f 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_20520 d9df1ba8e39530680d9b5da289f1593f 241 Pfam PF00005 ABC transporter 20 166 2.8E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_20520 d9df1ba8e39530680d9b5da289f1593f 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 4.0E-120 T 14-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 RY45_20520 d9df1ba8e39530680d9b5da289f1593f 241 SMART SM00382 28 202 1.3E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_20520 d9df1ba8e39530680d9b5da289f1593f 241 SUPERFAMILY SSF52540 3 236 4.09E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20520 d9df1ba8e39530680d9b5da289f1593f 241 Gene3D G3DSA:3.40.50.300 2 241 8.9E-68 T 14-10-2018 RY45_03060 b8d0a1afbd5d11ddba5650ca4bc6bf07 342 Pfam PF00419 Fimbrial protein 192 342 2.5E-20 T 14-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 RY45_03060 b8d0a1afbd5d11ddba5650ca4bc6bf07 342 SUPERFAMILY SSF49401 202 342 9.44E-16 T 14-10-2018 IPR008966 Adhesion domain superfamily RY45_03060 b8d0a1afbd5d11ddba5650ca4bc6bf07 342 Gene3D G3DSA:2.60.40.1090 204 341 3.3E-24 T 14-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 Gene3D G3DSA:3.40.630.10 93 433 8.9E-98 T 14-10-2018 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 278 285 - T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 112 424 4.7E-94 T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 Pfam PF12404 Peptidase 5 83 3.8E-29 T 14-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 PRINTS PR00481 Cytosol aminopeptidase signature 302 317 5.2E-44 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 PRINTS PR00481 Cytosol aminopeptidase signature 193 210 5.2E-44 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 PRINTS PR00481 Cytosol aminopeptidase signature 252 273 5.2E-44 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 PRINTS PR00481 Cytosol aminopeptidase signature 215 236 5.2E-44 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 PRINTS PR00481 Cytosol aminopeptidase signature 274 294 5.2E-44 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 SUPERFAMILY SSF53187 106 430 2.89E-92 T 14-10-2018 RY45_09560 ca2158d769a3c299765a2274a7759cc6 433 PIRSF PIRSF036388 1 433 3.2E-182 T 14-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 RY45_13360 51ac7ea679ab3c70b981ce11fd6b69e7 337 Gene3D G3DSA:3.50.30.60 169 335 8.8E-50 T 14-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RY45_13360 51ac7ea679ab3c70b981ce11fd6b69e7 337 Gene3D G3DSA:3.40.50.10740 1 162 3.1E-55 T 14-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal RY45_13360 51ac7ea679ab3c70b981ce11fd6b69e7 337 SUPERFAMILY SSF141986 175 327 1.7E-37 T 14-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RY45_13360 51ac7ea679ab3c70b981ce11fd6b69e7 337 SUPERFAMILY SSF52317 2 158 9.15E-43 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_13360 51ac7ea679ab3c70b981ce11fd6b69e7 337 PIRSF PIRSF028757 3 336 3.6E-81 T 14-10-2018 IPR003507 Peptidase family S66 RY45_13360 51ac7ea679ab3c70b981ce11fd6b69e7 337 Pfam PF02016 LD-carboxypeptidase 15 320 1.4E-69 T 14-10-2018 IPR003507 Peptidase family S66 RY45_01100 2ed2d98d46430343541abbc6c04a3ec7 224 Gene3D G3DSA:3.40.140.10 102 224 1.9E-41 T 14-10-2018 RY45_01100 2ed2d98d46430343541abbc6c04a3ec7 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 14-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site RY45_01100 2ed2d98d46430343541abbc6c04a3ec7 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 3.4E-74 T 14-10-2018 IPR001405 Uncharacterised protein family UPF0758 RY45_01100 2ed2d98d46430343541abbc6c04a3ec7 224 SUPERFAMILY SSF47781 21 90 3.41E-10 T 14-10-2018 IPR010994 RuvA domain 2-like RY45_01100 2ed2d98d46430343541abbc6c04a3ec7 224 SUPERFAMILY SSF102712 114 191 4.58E-7 T 14-10-2018 RY45_01100 2ed2d98d46430343541abbc6c04a3ec7 224 Pfam PF04002 RadC-like JAB domain 104 222 8.8E-43 T 14-10-2018 IPR025657 RadC-like JAB domain RY45_20755 750227d713cb3ca6cd944f523aab89da 306 SUPERFAMILY SSF46689 247 296 2.55E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_20755 750227d713cb3ca6cd944f523aab89da 306 Pfam PF12833 Helix-turn-helix domain 217 294 1.7E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_20755 750227d713cb3ca6cd944f523aab89da 306 SUPERFAMILY SSF51215 37 172 2.88E-9 T 14-10-2018 IPR037923 Transcription regulator HTH-like RY45_20755 750227d713cb3ca6cd944f523aab89da 306 SMART SM00342 211 294 5.0E-29 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_20755 750227d713cb3ca6cd944f523aab89da 306 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 248 290 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_20755 750227d713cb3ca6cd944f523aab89da 306 Gene3D G3DSA:1.10.10.60 193 299 7.3E-26 T 14-10-2018 RY45_20755 750227d713cb3ca6cd944f523aab89da 306 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 278 4.3E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_20755 750227d713cb3ca6cd944f523aab89da 306 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 278 294 4.3E-6 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RY45_20755 750227d713cb3ca6cd944f523aab89da 306 Pfam PF02311 AraC-like ligand binding domain 44 174 2.7E-6 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RY45_09290 558aa7f07ffe840b887e186cf4315539 146 Pfam PF03646 FlaG protein 35 143 8.3E-25 T 14-10-2018 IPR005186 FlaG protein RY45_09290 558aa7f07ffe840b887e186cf4315539 146 Gene3D G3DSA:3.30.160.170 18 128 3.5E-14 T 14-10-2018 IPR035924 FlaG-like superfamily RY45_09290 558aa7f07ffe840b887e186cf4315539 146 SUPERFAMILY SSF160214 37 145 2.62E-21 T 14-10-2018 IPR035924 FlaG-like superfamily RY45_13450 481542dedf578cba2b132b955e7c20c3 301 Pfam PF07549 SecD/SecF GG Motif 28 51 4.1E-6 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RY45_13450 481542dedf578cba2b132b955e7c20c3 301 SUPERFAMILY SSF82866 117 283 1.15E-32 T 14-10-2018 RY45_13450 481542dedf578cba2b132b955e7c20c3 301 Gene3D G3DSA:1.20.1640.10 96 297 7.2E-12 T 14-10-2018 RY45_13450 481542dedf578cba2b132b955e7c20c3 301 Pfam PF02355 Protein export membrane protein 110 280 2.9E-52 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RY45_13450 481542dedf578cba2b132b955e7c20c3 301 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 33 276 8.7E-59 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RY45_13450 481542dedf578cba2b132b955e7c20c3 301 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 5 287 21.254 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RY45_13450 481542dedf578cba2b132b955e7c20c3 301 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 95 273 4.6E-48 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_13450 481542dedf578cba2b132b955e7c20c3 301 PRINTS PR01755 Bacterial translocase SecF protein signature 144 158 7.5E-24 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_13450 481542dedf578cba2b132b955e7c20c3 301 PRINTS PR01755 Bacterial translocase SecF protein signature 32 47 7.5E-24 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_13450 481542dedf578cba2b132b955e7c20c3 301 PRINTS PR01755 Bacterial translocase SecF protein signature 192 210 7.5E-24 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_13450 481542dedf578cba2b132b955e7c20c3 301 PRINTS PR01755 Bacterial translocase SecF protein signature 224 239 7.5E-24 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RY45_22050 ea7814cb5a581d51c3cc68d8f6e191e0 392 Gene3D G3DSA:1.25.40.10 200 371 2.2E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_22050 ea7814cb5a581d51c3cc68d8f6e191e0 392 Gene3D G3DSA:1.25.40.10 29 176 9.5E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_22050 ea7814cb5a581d51c3cc68d8f6e191e0 392 SUPERFAMILY SSF48452 65 230 9.68E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_06695 2218f19f12a9f4335fa64b1ab3a19d02 268 Gene3D G3DSA:3.30.2010.10 52 141 3.3E-7 T 14-10-2018 RY45_06695 2218f19f12a9f4335fa64b1ab3a19d02 268 Pfam PF01435 Peptidase family M48 78 245 5.4E-39 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RY45_20620 8ce5947ad7f65466761750ac0e1a64e7 398 Pfam PF05940 NnrS protein 15 392 1.4E-107 T 14-10-2018 IPR010266 NnrS RY45_00220 e7e1c2f2b03ed2c2689c2b78549533a6 284 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 4.9E-70 T 14-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 RY45_00220 e7e1c2f2b03ed2c2689c2b78549533a6 284 Pfam PF00892 EamA-like transporter family 139 274 3.8E-6 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_00220 e7e1c2f2b03ed2c2689c2b78549533a6 284 SUPERFAMILY SSF103481 181 278 6.15E-7 T 14-10-2018 RY45_00220 e7e1c2f2b03ed2c2689c2b78549533a6 284 SUPERFAMILY SSF103481 35 131 6.54E-6 T 14-10-2018 RY45_18030 cd6310b2e0ddca05625cd5cf0cb8c292 325 Pfam PF13437 HlyD family secretion protein 206 282 6.0E-5 T 14-10-2018 RY45_18030 cd6310b2e0ddca05625cd5cf0cb8c292 325 Gene3D G3DSA:2.40.30.170 33 321 4.2E-28 T 14-10-2018 RY45_18030 cd6310b2e0ddca05625cd5cf0cb8c292 325 Gene3D G3DSA:1.10.287.470 76 205 4.2E-28 T 14-10-2018 RY45_18030 cd6310b2e0ddca05625cd5cf0cb8c292 325 Gene3D G3DSA:2.40.50.100 42 240 4.2E-28 T 14-10-2018 RY45_18030 cd6310b2e0ddca05625cd5cf0cb8c292 325 Pfam PF13533 Biotin-lipoyl like 45 89 2.2E-8 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RY45_18030 cd6310b2e0ddca05625cd5cf0cb8c292 325 SUPERFAMILY SSF111369 35 255 3.92E-6 T 14-10-2018 RY45_18255 06669a050a20304e3c9517fd8354b556 176 SUPERFAMILY SSF50324 6 174 2.88E-65 T 14-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RY45_18255 06669a050a20304e3c9517fd8354b556 176 Pfam PF00719 Inorganic pyrophosphatase 18 173 1.0E-52 T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RY45_18255 06669a050a20304e3c9517fd8354b556 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RY45_18255 06669a050a20304e3c9517fd8354b556 176 Gene3D G3DSA:3.90.80.10 1 175 8.7E-68 T 14-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RY45_18255 06669a050a20304e3c9517fd8354b556 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.295 T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 Gene3D G3DSA:2.40.50.530 1 65 8.4E-23 T 14-10-2018 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 17.71 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 4.0E-26 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 14-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 SUPERFAMILY SSF143034 2 64 4.58E-23 T 14-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.6E-19 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.6E-19 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.6E-19 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RY45_11240 4c36025369c717ac4e54c6855cf4e9a7 65 Pfam PF01632 Ribosomal protein L35 2 61 5.3E-23 T 14-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_21145 11e7788812590cac92749dcbe6a5a344 449 Gene3D G3DSA:1.10.287.130 189 289 5.0E-7 T 14-10-2018 RY45_21145 11e7788812590cac92749dcbe6a5a344 449 Gene3D G3DSA:3.30.565.10 304 447 1.4E-22 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_21145 11e7788812590cac92749dcbe6a5a344 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 431 4.1E-9 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_21145 11e7788812590cac92749dcbe6a5a344 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 6.1E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21145 11e7788812590cac92749dcbe6a5a344 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 423 6.1E-7 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_21145 11e7788812590cac92749dcbe6a5a344 449 SMART SM00387 339 445 1.8E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_21145 11e7788812590cac92749dcbe6a5a344 449 SUPERFAMILY SSF55874 307 442 3.54E-23 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_05580 0a05fd1fb4ae7e1ba10a49fe0dbbeb19 245 Gene3D G3DSA:3.20.20.450 11 245 3.0E-44 T 14-10-2018 IPR035919 EAL domain superfamily RY45_05580 0a05fd1fb4ae7e1ba10a49fe0dbbeb19 245 SMART SM00052 5 243 1.8E-21 T 14-10-2018 IPR001633 EAL domain RY45_05580 0a05fd1fb4ae7e1ba10a49fe0dbbeb19 245 Pfam PF00563 EAL domain 23 238 2.2E-41 T 14-10-2018 IPR001633 EAL domain RY45_05580 0a05fd1fb4ae7e1ba10a49fe0dbbeb19 245 SUPERFAMILY SSF141868 20 243 4.05E-45 T 14-10-2018 IPR035919 EAL domain superfamily RY45_19490 3eab7862a9a59e2ee75c325fa8d095a5 307 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 6 307 49.66 T 14-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 RY45_19490 3eab7862a9a59e2ee75c325fa8d095a5 307 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 8 304 3.9E-123 T 14-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 RY45_19490 3eab7862a9a59e2ee75c325fa8d095a5 307 PIRSF PIRSF026649 4 306 1.3E-88 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RY45_19490 3eab7862a9a59e2ee75c325fa8d095a5 307 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 10 297 5.2E-80 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RY45_07015 e14368802dc96f035f78109eeb692de4 239 SUPERFAMILY SSF54637 92 238 4.38E-30 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_07015 e14368802dc96f035f78109eeb692de4 239 Gene3D G3DSA:3.10.129.10 89 238 1.4E-37 T 14-10-2018 RY45_07015 e14368802dc96f035f78109eeb692de4 239 Pfam PF01575 MaoC like domain 95 205 1.3E-21 T 14-10-2018 IPR002539 MaoC-like dehydratase domain RY45_06600 b74a5af2f644bb043703447c5d1b99a3 119 SUPERFAMILY SSF141488 33 117 1.44E-19 T 14-10-2018 IPR036328 C-type lysozyme inhibitor superfamily RY45_06600 b74a5af2f644bb043703447c5d1b99a3 119 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 37 108 3.5E-20 T 14-10-2018 IPR018660 C-type lysozyme inhibitor RY45_06600 b74a5af2f644bb043703447c5d1b99a3 119 Gene3D G3DSA:2.40.128.200 32 119 1.4E-21 T 14-10-2018 IPR036328 C-type lysozyme inhibitor superfamily RY45_17465 514ec2c942bda38cba3728afe5c823b0 146 SUPERFAMILY SSF54637 16 138 4.06E-29 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_17465 514ec2c942bda38cba3728afe5c823b0 146 Gene3D G3DSA:3.10.129.10 11 144 4.0E-23 T 14-10-2018 RY45_17465 514ec2c942bda38cba3728afe5c823b0 146 Pfam PF03061 Thioesterase superfamily 31 97 1.9E-7 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 Gene3D G3DSA:3.30.565.10 322 474 7.4E-37 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 473 2.1E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 418 2.1E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 432 2.1E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 454 2.1E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 Gene3D G3DSA:1.10.287.130 209 321 1.9E-15 T 14-10-2018 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 370 474 5.1E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 SMART SM00387 367 476 4.7E-29 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 SMART SM00388 258 323 8.6E-9 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 Pfam PF08521 Two-component sensor kinase N-terminal 102 180 2.5E-6 T 14-10-2018 IPR013727 Two-component sensor kinase, N-terminal RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 322 4.1E-7 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 SUPERFAMILY SSF47384 241 323 1.59E-12 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RY45_16620 ed0ba2889f64eb0ee61ff4a91e822c4f 479 SUPERFAMILY SSF55874 313 474 7.07E-39 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_08365 bf7ffd9c8687994662c71cf2af70d835 160 Gene3D G3DSA:1.10.10.10 1 158 1.7E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_08365 bf7ffd9c8687994662c71cf2af70d835 160 SMART SM00347 44 145 2.9E-23 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_08365 bf7ffd9c8687994662c71cf2af70d835 160 SUPERFAMILY SSF46785 12 156 5.94E-31 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08365 bf7ffd9c8687994662c71cf2af70d835 160 Pfam PF01047 MarR family 55 109 5.8E-11 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_08365 bf7ffd9c8687994662c71cf2af70d835 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 105 121 3.9E-10 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_08365 bf7ffd9c8687994662c71cf2af70d835 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 135 155 3.9E-10 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_08365 bf7ffd9c8687994662c71cf2af70d835 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 101 3.9E-10 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 Gene3D G3DSA:1.10.10.10 2 64 8.0E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 9.0E-23 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 9.0E-23 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 9.0E-23 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 58 5.8E-22 T 14-10-2018 RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 SUPERFAMILY SSF46785 11 69 3.22E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 SMART SM00344 11 120 1.4E-54 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 Gene3D G3DSA:3.30.70.920 65 148 5.2E-25 T 14-10-2018 RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 SUPERFAMILY SSF54909 73 156 1.88E-21 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 14-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RY45_10020 081ca62a16cec4e3f1a83a542a641d83 163 Pfam PF01037 Lrp/AsnC ligand binding domain 77 151 4.3E-24 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RY45_11270 b654261d9b6cc8eb8856c28e2e999938 415 Gene3D G3DSA:3.40.50.2300 115 239 6.5E-10 T 14-10-2018 RY45_11270 b654261d9b6cc8eb8856c28e2e999938 415 Pfam PF00072 Response regulator receiver domain 120 231 9.3E-6 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_11270 b654261d9b6cc8eb8856c28e2e999938 415 SUPERFAMILY SSF52172 119 247 2.28E-11 T 14-10-2018 IPR011006 CheY-like superfamily RY45_10470 121b49fdcd0c26b0cc481c329d4d9295 268 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 237 257 1.4E-5 T 14-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 RY45_10470 121b49fdcd0c26b0cc481c329d4d9295 268 TIGRFAM TIGR03950 sidero_Fe_reduc: siderophore ferric iron reductase, AHA_1954 family 28 257 8.0E-78 T 14-10-2018 IPR023998 Siderophore ferric iron reductase, AHA1954 family RY45_06450 46c4408ce363014c93e6696a0a37159f 579 ProSitePatterns PS00211 ABC transporters family signature. 413 427 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_06450 46c4408ce363014c93e6696a0a37159f 579 SUPERFAMILY SSF52540 307 498 1.33E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06450 46c4408ce363014c93e6696a0a37159f 579 SUPERFAMILY SSF52540 6 199 1.84E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06450 46c4408ce363014c93e6696a0a37159f 579 Gene3D G3DSA:3.40.50.300 2 233 1.9E-45 T 14-10-2018 RY45_06450 46c4408ce363014c93e6696a0a37159f 579 Gene3D G3DSA:3.40.50.300 250 503 7.8E-36 T 14-10-2018 RY45_06450 46c4408ce363014c93e6696a0a37159f 579 Pfam PF00005 ABC transporter 315 441 4.7E-12 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_06450 46c4408ce363014c93e6696a0a37159f 579 Pfam PF00005 ABC transporter 21 151 7.7E-25 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_06450 46c4408ce363014c93e6696a0a37159f 579 SMART SM00382 29 196 1.4E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_06450 46c4408ce363014c93e6696a0a37159f 579 SMART SM00382 319 486 7.1E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_11345 1e59ffa1dc83aa662965f7cef471eb91 314 SUPERFAMILY SSF52402 4 157 1.09E-32 T 14-10-2018 RY45_11345 1e59ffa1dc83aa662965f7cef471eb91 314 Pfam PF00582 Universal stress protein family 4 147 7.1E-22 T 14-10-2018 IPR006016 UspA RY45_11345 1e59ffa1dc83aa662965f7cef471eb91 314 Pfam PF00582 Universal stress protein family 176 300 9.8E-12 T 14-10-2018 IPR006016 UspA RY45_11345 1e59ffa1dc83aa662965f7cef471eb91 314 SUPERFAMILY SSF52402 156 305 2.01E-23 T 14-10-2018 RY45_11345 1e59ffa1dc83aa662965f7cef471eb91 314 Gene3D G3DSA:3.40.50.12370 1 311 3.0E-111 T 14-10-2018 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 Gene3D G3DSA:2.40.50.140 380 442 4.8E-22 T 14-10-2018 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 SMART SM00729 140 365 4.3E-58 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 9 438 2.3E-110 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 144 164 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 Pfam PF04055 Radical SAM superfamily 146 323 9.5E-33 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 Pfam PF00919 Uncharacterized protein family UPF0004 9 95 1.8E-21 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 9 437 6.8E-190 T 14-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 Gene3D G3DSA:3.40.50.12160 9 137 7.7E-29 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 Gene3D G3DSA:3.80.30.20 138 379 9.1E-76 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 Pfam PF01938 TRAM domain 377 440 2.1E-4 T 14-10-2018 IPR002792 TRAM domain RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 SUPERFAMILY SSF102114 113 372 1.31E-55 T 14-10-2018 RY45_07175 354bc30a8e144c80bfb6b5b8a1e9d0b9 442 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 8 440 63.03 T 14-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RY45_21530 433e0438cbeda2eb40af1dcdfc972514 154 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 24 152 2.2E-18 T 14-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RY45_21530 433e0438cbeda2eb40af1dcdfc972514 154 SUPERFAMILY SSF54637 3 153 3.84E-28 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_21530 433e0438cbeda2eb40af1dcdfc972514 154 Pfam PF03061 Thioesterase superfamily 55 143 1.3E-16 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RY45_21530 433e0438cbeda2eb40af1dcdfc972514 154 Gene3D G3DSA:3.10.129.10 1 154 5.1E-57 T 14-10-2018 RY45_07770 1a87e41a17deb0176a239cd03ab00d40 258 Pfam PF04492 Bacteriophage replication protein O 1 94 6.7E-34 T 14-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 RY45_07770 1a87e41a17deb0176a239cd03ab00d40 258 TIGRFAM TIGR01610 phage_O_Nterm: phage replication protein O, N-terminal domain 2 94 6.9E-30 T 14-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 RY45_07770 1a87e41a17deb0176a239cd03ab00d40 258 Gene3D G3DSA:1.10.10.10 1 97 2.5E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_18475 90738a38ed3d42f8d383f4a3f23b9533 437 Pfam PF00209 Sodium:neurotransmitter symporter family 151 434 2.1E-30 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18475 90738a38ed3d42f8d383f4a3f23b9533 437 Pfam PF00209 Sodium:neurotransmitter symporter family 5 121 3.0E-24 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18475 90738a38ed3d42f8d383f4a3f23b9533 437 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 27 41 - T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18475 90738a38ed3d42f8d383f4a3f23b9533 437 SUPERFAMILY SSF161070 5 436 1.96E-120 T 14-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 RY45_18475 90738a38ed3d42f8d383f4a3f23b9533 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 85 111 1.9E-15 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18475 90738a38ed3d42f8d383f4a3f23b9533 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 40 59 1.9E-15 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18475 90738a38ed3d42f8d383f4a3f23b9533 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 417 437 1.9E-15 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_18475 90738a38ed3d42f8d383f4a3f23b9533 437 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 11 32 1.9E-15 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_00045 624c175c9f46d8e6091ff73796b109bc 416 SUPERFAMILY SSF53383 23 411 4.81E-61 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_00045 624c175c9f46d8e6091ff73796b109bc 416 Gene3D G3DSA:3.40.640.10 1 415 2.8E-149 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_00045 624c175c9f46d8e6091ff73796b109bc 416 Pfam PF00155 Aminotransferase class I and II 66 402 4.3E-23 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RY45_08870 d8b9c95dadf4d9f98c2b9a2ce73c7311 668 SMART SM00304 339 391 8.7E-4 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_08870 d8b9c95dadf4d9f98c2b9a2ce73c7311 668 SUPERFAMILY SSF58104 359 666 4.45E-75 T 14-10-2018 RY45_08870 d8b9c95dadf4d9f98c2b9a2ce73c7311 668 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 474 632 1.7E-41 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08870 d8b9c95dadf4d9f98c2b9a2ce73c7311 668 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 533 562 2.0E-8 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_08870 d8b9c95dadf4d9f98c2b9a2ce73c7311 668 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 420 449 2.0E-8 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_08870 d8b9c95dadf4d9f98c2b9a2ce73c7311 668 SMART SM00283 406 667 3.2E-74 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_08870 d8b9c95dadf4d9f98c2b9a2ce73c7311 668 Gene3D G3DSA:1.10.287.950 340 668 1.8E-65 T 14-10-2018 RY45_15895 4c63fc318f70949e000cc15b429a8bf2 457 SUPERFAMILY SSF109604 270 437 1.13E-34 T 14-10-2018 RY45_15895 4c63fc318f70949e000cc15b429a8bf2 457 SUPERFAMILY SSF109604 14 227 3.33E-13 T 14-10-2018 RY45_15895 4c63fc318f70949e000cc15b429a8bf2 457 Pfam PF13487 HD domain 330 392 7.2E-19 T 14-10-2018 RY45_15895 4c63fc318f70949e000cc15b429a8bf2 457 Pfam PF13487 HD domain 131 184 7.6E-10 T 14-10-2018 RY45_15895 4c63fc318f70949e000cc15b429a8bf2 457 Gene3D G3DSA:1.10.3210.10 257 446 9.5E-59 T 14-10-2018 RY45_15895 4c63fc318f70949e000cc15b429a8bf2 457 Gene3D G3DSA:1.10.3210.10 120 232 7.0E-19 T 14-10-2018 RY45_15895 4c63fc318f70949e000cc15b429a8bf2 457 Gene3D G3DSA:1.10.3210.10 7 118 2.3E-5 T 14-10-2018 RY45_15895 4c63fc318f70949e000cc15b429a8bf2 457 SMART SM00471 275 410 2.6E-10 T 14-10-2018 IPR003607 HD/PDEase domain RY45_06170 b00c20cc771f248ab1c8e1106fe9a329 128 Pfam PF04241 Protein of unknown function (DUF423) 21 106 3.4E-26 T 14-10-2018 IPR006696 Protein of unknown function DUF423 RY45_04885 d3da8ee3f43a4e5142b5a3e79cc5216f 326 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 18 320 2.1E-135 T 14-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 RY45_04885 d3da8ee3f43a4e5142b5a3e79cc5216f 326 Gene3D G3DSA:3.40.190.10 123 320 2.5E-113 T 14-10-2018 RY45_04885 d3da8ee3f43a4e5142b5a3e79cc5216f 326 Gene3D G3DSA:3.40.190.10 23 296 2.5E-113 T 14-10-2018 RY45_04885 d3da8ee3f43a4e5142b5a3e79cc5216f 326 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 9 326 9.6E-148 T 14-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 RY45_04885 d3da8ee3f43a4e5142b5a3e79cc5216f 326 SUPERFAMILY SSF53850 21 320 1.53E-63 T 14-10-2018 RY45_04885 d3da8ee3f43a4e5142b5a3e79cc5216f 326 Pfam PF13416 Bacterial extracellular solute-binding protein 40 285 1.3E-19 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein RY45_05265 68b469069b91f52d73b052cc18a66d5a 169 PIRSF PIRSF011443 2 168 7.5E-48 T 14-10-2018 IPR026267 Inner membrane protein YgjV RY45_05265 68b469069b91f52d73b052cc18a66d5a 169 Pfam PF10688 Bacterial inner membrane protein 7 162 1.0E-44 T 14-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV RY45_11065 bd01e4f689bf64f70a7e0eb250f682ee 209 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 14-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RY45_11065 bd01e4f689bf64f70a7e0eb250f682ee 209 SUPERFAMILY SSF53254 1 184 5.5E-51 T 14-10-2018 IPR029033 Histidine phosphatase superfamily RY45_11065 bd01e4f689bf64f70a7e0eb250f682ee 209 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 184 5.7E-49 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_11065 bd01e4f689bf64f70a7e0eb250f682ee 209 SMART SM00855 2 158 9.1E-19 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RY45_11065 bd01e4f689bf64f70a7e0eb250f682ee 209 Gene3D G3DSA:3.40.50.1240 1 190 1.3E-50 T 14-10-2018 IPR029033 Histidine phosphatase superfamily RY45_11065 bd01e4f689bf64f70a7e0eb250f682ee 209 PIRSF PIRSF000709 2 164 2.4E-12 T 14-10-2018 RY45_14390 816d7b55b1bc256235cc04b31e6cd81c 243 Gene3D G3DSA:3.40.190.10 29 239 1.2E-30 T 14-10-2018 RY45_14390 816d7b55b1bc256235cc04b31e6cd81c 243 SMART SM00062 22 243 5.9E-16 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_14390 816d7b55b1bc256235cc04b31e6cd81c 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 241 3.0E-31 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_14390 816d7b55b1bc256235cc04b31e6cd81c 243 SUPERFAMILY SSF53850 23 241 4.6E-42 T 14-10-2018 RY45_14390 816d7b55b1bc256235cc04b31e6cd81c 243 Gene3D G3DSA:3.40.190.10 107 201 1.2E-30 T 14-10-2018 RY45_16555 e0da6a4d65fac66052ec98456ab19617 132 Gene3D G3DSA:1.20.1300.10 5 132 1.7E-50 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_16555 e0da6a4d65fac66052ec98456ab19617 132 Pfam PF02300 Fumarate reductase subunit C 6 131 1.4E-50 T 14-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 RY45_16555 e0da6a4d65fac66052ec98456ab19617 132 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 11 117 2.0E-19 T 14-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 RY45_16555 e0da6a4d65fac66052ec98456ab19617 132 PIRSF PIRSF000180 5 132 4.4E-40 T 14-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 RY45_16555 e0da6a4d65fac66052ec98456ab19617 132 SUPERFAMILY SSF81343 6 131 5.56E-43 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_19710 69a8ce1d6aefe61b318bdc769308c31a 469 Pfam PF03553 Na+/H+ antiporter family 163 454 6.6E-61 T 14-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 RY45_19710 69a8ce1d6aefe61b318bdc769308c31a 469 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 9 458 6.8E-165 T 14-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 RY45_03885 56908adb0660d1927dfa1a9b9158fdfa 311 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 286 38.985 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RY45_03885 56908adb0660d1927dfa1a9b9158fdfa 311 Pfam PF02401 LytB protein 3 282 1.2E-93 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RY45_03885 56908adb0660d1927dfa1a9b9158fdfa 311 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 284 4.2E-102 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RY45_03885 56908adb0660d1927dfa1a9b9158fdfa 311 Gene3D G3DSA:3.40.50.11270 12 96 5.7E-113 T 14-10-2018 RY45_03885 56908adb0660d1927dfa1a9b9158fdfa 311 Gene3D G3DSA:3.40.1010.20 97 196 5.7E-113 T 14-10-2018 RY45_03885 56908adb0660d1927dfa1a9b9158fdfa 311 Gene3D G3DSA:3.40.1010.20 6 282 5.7E-113 T 14-10-2018 RY45_20430 cd3417d9ed7488ece05fbc08f8bf6e22 364 Gene3D G3DSA:3.40.50.300 17 189 1.2E-18 T 14-10-2018 RY45_20430 cd3417d9ed7488ece05fbc08f8bf6e22 364 Hamap MF_01919 Cell division protein ZapE [zapE]. 1 364 54.525 T 14-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 RY45_20430 cd3417d9ed7488ece05fbc08f8bf6e22 364 Pfam PF03969 AFG1-like ATPase 1 360 9.5E-155 T 14-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 RY45_20430 cd3417d9ed7488ece05fbc08f8bf6e22 364 SUPERFAMILY SSF52540 60 198 1.17E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13365 b317c746cc597d7f6f43224d25b08bfe 280 Pfam PF01734 Patatin-like phospholipase 10 175 2.6E-11 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RY45_13365 b317c746cc597d7f6f43224d25b08bfe 280 Gene3D G3DSA:3.40.1090.10 99 233 2.6E-6 T 14-10-2018 RY45_13365 b317c746cc597d7f6f43224d25b08bfe 280 Gene3D G3DSA:3.40.1090.10 3 96 2.0E-9 T 14-10-2018 RY45_13365 b317c746cc597d7f6f43224d25b08bfe 280 SUPERFAMILY SSF52151 8 233 1.91E-34 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_02235 1b29ddf90fb3198a89d1bf5603f76add 296 Gene3D G3DSA:3.40.50.300 28 187 3.1E-14 T 14-10-2018 RY45_02235 1b29ddf90fb3198a89d1bf5603f76add 296 SUPERFAMILY SSF52540 5 266 6.13E-33 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_02235 1b29ddf90fb3198a89d1bf5603f76add 296 Pfam PF13401 AAA domain 42 173 5.0E-23 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_00960 9997107da0d6a84ec01a08a07d741506 81 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 3 81 28.143 T 14-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 RY45_00960 9997107da0d6a84ec01a08a07d741506 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 14-10-2018 IPR001455 TusA-like domain RY45_00960 9997107da0d6a84ec01a08a07d741506 81 Pfam PF01206 Sulfurtransferase TusA 10 79 3.2E-24 T 14-10-2018 IPR001455 TusA-like domain RY45_00960 9997107da0d6a84ec01a08a07d741506 81 Gene3D G3DSA:3.30.110.40 2 81 4.9E-30 T 14-10-2018 IPR036868 TusA-like domain superfamily RY45_00960 9997107da0d6a84ec01a08a07d741506 81 SUPERFAMILY SSF64307 4 80 3.4E-26 T 14-10-2018 IPR036868 TusA-like domain superfamily RY45_05630 eebfcb8cdae81f6212962c69bf212aa1 410 Gene3D G3DSA:3.90.1150.10 26 404 3.3E-126 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_05630 eebfcb8cdae81f6212962c69bf212aa1 410 Gene3D G3DSA:3.40.640.10 34 293 3.3E-126 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_05630 eebfcb8cdae81f6212962c69bf212aa1 410 SUPERFAMILY SSF53383 5 407 1.32E-85 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_05630 eebfcb8cdae81f6212962c69bf212aa1 410 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 5 405 3.6E-148 T 14-10-2018 IPR011340 Cysteine desulfurase-related RY45_05630 eebfcb8cdae81f6212962c69bf212aa1 410 Pfam PF00266 Aminotransferase class-V 26 401 1.7E-64 T 14-10-2018 IPR000192 Aminotransferase class V domain RY45_07840 48983fb2178145cb08bedb8758296ee6 182 Pfam PF09374 Predicted Peptidoglycan domain 100 179 3.9E-14 T 14-10-2018 IPR018537 Peptidoglycan binding domain RY45_07840 48983fb2178145cb08bedb8758296ee6 182 Pfam PF05838 Glycosyl hydrolase 108 9 92 1.0E-17 T 14-10-2018 IPR008565 Protein of unknown function DUF847 RY45_07840 48983fb2178145cb08bedb8758296ee6 182 SUPERFAMILY SSF53955 6 181 3.37E-33 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_07840 48983fb2178145cb08bedb8758296ee6 182 Gene3D G3DSA:1.20.141.10 5 182 1.5E-32 T 14-10-2018 RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 554 5.4E-187 T 14-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 Gene3D G3DSA:3.40.50.300 343 586 1.6E-67 T 14-10-2018 RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 Pfam PF00664 ABC transporter transmembrane region 26 292 3.4E-41 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 Pfam PF00005 ABC transporter 369 512 4.2E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 Gene3D G3DSA:1.20.1560.10 1 335 1.1E-49 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 SMART SM00382 375 552 2.6E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 SUPERFAMILY SSF90123 3 334 6.28E-55 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_15630 54d41c71ce105c92984a07ca15f571e7 589 SUPERFAMILY SSF52540 356 580 2.22E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_17285 c3951e6246661ad0d58556b93f3046c2 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 89 2.2E-8 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RY45_17285 c3951e6246661ad0d58556b93f3046c2 338 SUPERFAMILY SSF50129 18 144 5.02E-31 T 14-10-2018 IPR011032 GroES-like superfamily RY45_17285 c3951e6246661ad0d58556b93f3046c2 338 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 332 5.5E-122 T 14-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 RY45_17285 c3951e6246661ad0d58556b93f3046c2 338 Pfam PF13602 Zinc-binding dehydrogenase 191 331 1.7E-17 T 14-10-2018 RY45_17285 c3951e6246661ad0d58556b93f3046c2 338 Gene3D G3DSA:3.40.50.720 128 272 3.0E-98 T 14-10-2018 RY45_17285 c3951e6246661ad0d58556b93f3046c2 338 SUPERFAMILY SSF51735 117 283 1.76E-33 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_17285 c3951e6246661ad0d58556b93f3046c2 338 SMART SM00829 12 331 2.8E-11 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RY45_17285 c3951e6246661ad0d58556b93f3046c2 338 Gene3D G3DSA:3.90.180.10 26 330 3.0E-98 T 14-10-2018 RY45_14020 cbb42c892b564c9728898287ef0d3724 88 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 84 3.7E-34 T 14-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 RY45_14020 cbb42c892b564c9728898287ef0d3724 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.3E-25 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_14020 cbb42c892b564c9728898287ef0d3724 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.3E-25 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_14020 cbb42c892b564c9728898287ef0d3724 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.3E-25 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_14020 cbb42c892b564c9728898287ef0d3724 88 PIRSF PIRSF004669 1 88 7.2E-26 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_14020 cbb42c892b564c9728898287ef0d3724 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 2.0E-26 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_11615 e73c0dc597cd60d3ea60f9a1a86579f7 319 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 318 5.7E-139 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_11615 e73c0dc597cd60d3ea60f9a1a86579f7 319 SUPERFAMILY SSF53901 3 318 3.99E-69 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_11615 e73c0dc597cd60d3ea60f9a1a86579f7 319 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 230 318 5.1E-35 T 14-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_11615 e73c0dc597cd60d3ea60f9a1a86579f7 319 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 319 69.616 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_11615 e73c0dc597cd60d3ea60f9a1a86579f7 319 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 1.3E-31 T 14-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RY45_11615 e73c0dc597cd60d3ea60f9a1a86579f7 319 Gene3D G3DSA:3.40.47.10 1 319 4.4E-122 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_04155 496f64d7875d617cb1cbca0af98d5f9f 567 Pfam PF01425 Amidase 462 544 3.7E-7 T 14-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RY45_04155 496f64d7875d617cb1cbca0af98d5f9f 567 Pfam PF01425 Amidase 25 248 7.6E-45 T 14-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RY45_04155 496f64d7875d617cb1cbca0af98d5f9f 567 Gene3D G3DSA:3.90.1300.10 1 564 7.2E-102 T 14-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RY45_04155 496f64d7875d617cb1cbca0af98d5f9f 567 SUPERFAMILY SSF75304 1 561 8.37E-89 T 14-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RY45_13115 c5da736b265a6243d26527679a6a10fb 122 SMART SM00448 3 116 4.4E-34 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13115 c5da736b265a6243d26527679a6a10fb 122 SUPERFAMILY SSF52172 3 121 2.42E-35 T 14-10-2018 IPR011006 CheY-like superfamily RY45_13115 c5da736b265a6243d26527679a6a10fb 122 Pfam PF00072 Response regulator receiver domain 5 114 6.9E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13115 c5da736b265a6243d26527679a6a10fb 122 Gene3D G3DSA:3.40.50.12740 1 121 3.6E-38 T 14-10-2018 RY45_19595 4a5bac8c29efc427fa838860497ee133 366 Gene3D G3DSA:1.10.530.10 177 356 5.1E-51 T 14-10-2018 RY45_19595 4a5bac8c29efc427fa838860497ee133 366 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 214 242 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RY45_19595 4a5bac8c29efc427fa838860497ee133 366 Pfam PF11873 Domain of unknown function (DUF3393) 4 192 3.8E-66 T 14-10-2018 IPR024570 Murein transglycosylase-C, N-terminal RY45_19595 4a5bac8c29efc427fa838860497ee133 366 Pfam PF01464 Transglycosylase SLT domain 196 318 9.7E-30 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_19595 4a5bac8c29efc427fa838860497ee133 366 SUPERFAMILY SSF53955 156 356 5.91E-38 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 SUPERFAMILY SSF46977 424 525 1.31E-31 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 SUPERFAMILY SSF51905 9 446 4.46E-72 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 354 376 1.7E-11 T 14-10-2018 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 1.7E-11 T 14-10-2018 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 PIRSF PIRSF000171 334 535 5.3E-14 T 14-10-2018 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 PIRSF PIRSF000171 1 268 3.9E-25 T 14-10-2018 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 369 376 9.9E-6 T 14-10-2018 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 9.9E-6 T 14-10-2018 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 Pfam PF02910 Fumarate reductase flavoprotein C-term 440 520 3.3E-15 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 Pfam PF00890 FAD binding domain 10 391 2.0E-105 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 9 519 2.4E-210 T 14-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 Gene3D G3DSA:1.20.58.100 424 535 2.3E-45 T 14-10-2018 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 SUPERFAMILY SSF56425 237 352 5.98E-42 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 Gene3D G3DSA:3.50.50.60 10 403 6.2E-156 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_04465 cadcf764ebc8ef40377b80acdf88bdab 535 Gene3D G3DSA:3.90.700.10 247 357 6.2E-156 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_02550 63c8b8b7e87c6f265a3bda5a6b370cab 193 Pfam PF13036 Peptidoglycan-synthase activator LpoB 63 188 1.3E-19 T 14-10-2018 IPR014094 Penicillin-binding protein activator LpoB RY45_02550 63c8b8b7e87c6f265a3bda5a6b370cab 193 Gene3D G3DSA:3.40.50.10610 63 192 1.5E-20 T 14-10-2018 RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 PRINTS PR01650 Bacterial translocase SecE signature 42 63 1.4E-30 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 PRINTS PR01650 Bacterial translocase SecE signature 63 83 1.4E-30 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 PRINTS PR01650 Bacterial translocase SecE signature 87 107 1.4E-30 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 PRINTS PR01650 Bacterial translocase SecE signature 107 123 1.4E-30 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 68 121 1.2E-18 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 Hamap MF_00422 Protein translocase subunit SecE [secE]. 65 119 13.123 T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 Gene3D G3DSA:1.20.5.1030 64 121 5.2E-17 T 14-10-2018 IPR038379 SecE superfamily RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 69 97 - T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_21075 9bceeec4447b63c0042c7f62f7aa7aec 123 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 68 120 2.7E-20 T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RY45_19610 c242d7e387de86d967ef7f8283c4366f 244 SUPERFAMILY SSF53850 23 243 3.8E-35 T 14-10-2018 RY45_19610 c242d7e387de86d967ef7f8283c4366f 244 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 243 5.8E-23 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_19610 c242d7e387de86d967ef7f8283c4366f 244 SMART SM00062 22 244 0.001 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_19610 c242d7e387de86d967ef7f8283c4366f 244 Gene3D G3DSA:3.40.190.10 105 205 1.4E-26 T 14-10-2018 RY45_19610 c242d7e387de86d967ef7f8283c4366f 244 Gene3D G3DSA:3.40.190.10 27 243 1.4E-26 T 14-10-2018 RY45_13945 e904df0f33a62a76907f08fcacc7778d 165 SUPERFAMILY SSF48452 25 134 8.43E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_13945 e904df0f33a62a76907f08fcacc7778d 165 PIRSF PIRSF003165 1 159 9.7E-56 T 14-10-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup RY45_13945 e904df0f33a62a76907f08fcacc7778d 165 Gene3D G3DSA:1.25.40.10 9 159 6.5E-62 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_13945 e904df0f33a62a76907f08fcacc7778d 165 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 45 64 9.6E-45 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD RY45_13945 e904df0f33a62a76907f08fcacc7778d 165 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 69 91 9.6E-45 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD RY45_13945 e904df0f33a62a76907f08fcacc7778d 165 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 20 43 9.6E-45 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD RY45_13945 e904df0f33a62a76907f08fcacc7778d 165 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 101 123 9.6E-45 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD RY45_13945 e904df0f33a62a76907f08fcacc7778d 165 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 17 150 7.8E-42 T 14-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD RY45_04660 04473f4fa642cc51154329b5efabcacc 147 SUPERFAMILY SSF89095 2 146 5.23E-40 T 14-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 RY45_04660 04473f4fa642cc51154329b5efabcacc 147 Pfam PF09424 Yqey-like protein 4 146 6.8E-54 T 14-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 RY45_04660 04473f4fa642cc51154329b5efabcacc 147 Gene3D G3DSA:1.10.10.410 91 147 3.3E-18 T 14-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RY45_04660 04473f4fa642cc51154329b5efabcacc 147 Gene3D G3DSA:1.10.1510.10 1 90 1.5E-27 T 14-10-2018 RY45_08485 f440c8faffe06b1755128eda5bf7c69e 131 Gene3D G3DSA:3.10.129.10 2 131 1.5E-40 T 14-10-2018 RY45_08485 f440c8faffe06b1755128eda5bf7c69e 131 SUPERFAMILY SSF54637 7 130 1.37E-39 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_08485 f440c8faffe06b1755128eda5bf7c69e 131 Pfam PF03061 Thioesterase superfamily 26 97 6.0E-19 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 299 322 - T 14-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 PRINTS PR00173 Glutamate-aspartate symporter signature 17 37 3.0E-36 T 14-10-2018 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 3.0E-36 T 14-10-2018 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 3.0E-36 T 14-10-2018 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 3.0E-36 T 14-10-2018 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 PRINTS PR00173 Glutamate-aspartate symporter signature 84 109 3.0E-36 T 14-10-2018 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 3.0E-36 T 14-10-2018 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 PRINTS PR00173 Glutamate-aspartate symporter signature 229 248 3.0E-36 T 14-10-2018 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 Pfam PF00375 Sodium:dicarboxylate symporter family 19 403 5.7E-125 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 SUPERFAMILY SSF118215 19 404 3.53E-111 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_02075 fcbf9611cdb4976123e4fedfc1a6c44e 427 Gene3D G3DSA:1.10.3860.10 9 421 3.4E-130 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_12840 607debbc75b0fcfb382704056d11a3ba 245 SUPERFAMILY SSF56214 127 218 5.76E-12 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RY45_12840 607debbc75b0fcfb382704056d11a3ba 245 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 129 216 4.4E-8 T 14-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RY45_12840 607debbc75b0fcfb382704056d11a3ba 245 PRINTS PR01399 Enterobactin synthetase component D signature 92 110 9.2E-17 T 14-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 RY45_12840 607debbc75b0fcfb382704056d11a3ba 245 PRINTS PR01399 Enterobactin synthetase component D signature 62 82 9.2E-17 T 14-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 RY45_12840 607debbc75b0fcfb382704056d11a3ba 245 PRINTS PR01399 Enterobactin synthetase component D signature 175 191 9.2E-17 T 14-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 RY45_01785 0f5d1eefd49ae0ac0873b0c641dfab0c 242 SUPERFAMILY SSF53271 59 237 1.56E-31 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like RY45_01785 0f5d1eefd49ae0ac0873b0c641dfab0c 242 Gene3D G3DSA:3.40.50.2020 110 241 1.7E-14 T 14-10-2018 RY45_03455 3e7dc78c25c06b986c057844ea295b4f 420 Pfam PF13194 Domain of unknown function (DUF4010) 184 393 5.7E-64 T 14-10-2018 IPR025105 Domain of unknown function DUF4010 RY45_03455 3e7dc78c25c06b986c057844ea295b4f 420 Pfam PF02308 MgtC family 12 135 2.4E-14 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_22190 bc62d73b3d56e6196b3c170a433fec39 702 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 161 3.5E-15 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_22190 bc62d73b3d56e6196b3c170a433fec39 702 Gene3D G3DSA:2.40.170.20 172 702 4.1E-125 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_22190 bc62d73b3d56e6196b3c170a433fec39 702 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 701 3.4E-101 T 14-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RY45_22190 bc62d73b3d56e6196b3c170a433fec39 702 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 53 - T 14-10-2018 IPR010916 TonB box, conserved site RY45_22190 bc62d73b3d56e6196b3c170a433fec39 702 Pfam PF00593 TonB dependent receptor 255 701 1.2E-54 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_22190 bc62d73b3d56e6196b3c170a433fec39 702 Gene3D G3DSA:2.170.130.10 40 171 2.9E-31 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_22190 bc62d73b3d56e6196b3c170a433fec39 702 SUPERFAMILY SSF56935 42 702 2.52E-121 T 14-10-2018 RY45_17555 93f3dd89360b9f4021a34d9d3ffdce20 119 Gene3D G3DSA:2.102.10.10 9 118 7.6E-32 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RY45_17555 93f3dd89360b9f4021a34d9d3ffdce20 119 Pfam PF13806 Rieske-like [2Fe-2S] domain 15 116 4.5E-30 T 14-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RY45_17555 93f3dd89360b9f4021a34d9d3ffdce20 119 SUPERFAMILY SSF50022 15 118 6.75E-32 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RY45_17555 93f3dd89360b9f4021a34d9d3ffdce20 119 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 16 117 5.5E-28 T 14-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RY45_14305 d90da3a0b74850ff53bbc1c31ec94dc8 288 SUPERFAMILY SSF57783 236 281 9.35E-9 T 14-10-2018 RY45_14305 d90da3a0b74850ff53bbc1c31ec94dc8 288 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 245 280 2.5E-9 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RY45_14305 d90da3a0b74850ff53bbc1c31ec94dc8 288 Pfam PF08378 Nuclease-related domain 33 144 4.3E-26 T 14-10-2018 IPR011528 Nuclease-related domain, NERD RY45_14305 d90da3a0b74850ff53bbc1c31ec94dc8 288 Gene3D G3DSA:3.30.65.10 226 286 1.1E-5 T 14-10-2018 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 PIRSF PIRSF006256 15 801 8.2E-268 T 14-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 ProSitePatterns PS00150 Acylphosphatase signature 1. 24 34 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 Pfam PF01300 Telomere recombination 233 417 2.9E-52 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 Gene3D G3DSA:3.30.420.360 418 790 4.6E-117 T 14-10-2018 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 SUPERFAMILY SSF54975 16 102 7.2E-22 T 14-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 SUPERFAMILY SSF55821 197 423 7.63E-47 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 Gene3D G3DSA:3.30.420.350 521 778 4.6E-117 T 14-10-2018 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 Gene3D G3DSA:3.30.110.120 276 405 4.0E-138 T 14-10-2018 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 Gene3D G3DSA:3.90.870.50 22 396 4.0E-138 T 14-10-2018 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 Pfam PF07503 HypF finger 180 212 3.6E-15 T 14-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 Pfam PF07503 HypF finger 130 163 1.8E-14 T 14-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 23 791 1.0E-223 T 14-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 RY45_13030 d4e826e4fedc89e2e384fe3f6c80fe28 812 Pfam PF00708 Acylphosphatase 21 101 1.3E-19 T 14-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RY45_09995 5788d91a65c275ea23c2ff03d42e22ff 238 PIRSF PIRSF037208 1 238 1.8E-85 T 14-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 RY45_09995 5788d91a65c275ea23c2ff03d42e22ff 238 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 15 85 2.1E-17 T 14-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 RY45_09995 5788d91a65c275ea23c2ff03d42e22ff 238 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 104 225 4.5E-37 T 14-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 RY45_09995 5788d91a65c275ea23c2ff03d42e22ff 238 SUPERFAMILY SSF55729 80 233 4.07E-22 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_09995 5788d91a65c275ea23c2ff03d42e22ff 238 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 5 231 38.134 T 14-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 RY45_16850 01fae3470cfe6239304dc0b1c967f24c 189 Gene3D G3DSA:3.40.50.1820 1 188 7.0E-48 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_16850 01fae3470cfe6239304dc0b1c967f24c 189 SUPERFAMILY SSF53474 5 184 3.13E-36 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_16850 01fae3470cfe6239304dc0b1c967f24c 189 Pfam PF06821 Serine hydrolase 7 181 8.7E-32 T 14-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 RY45_13760 cfae2a43cd8bb790cc4554dc4d7adfad 249 Gene3D G3DSA:3.40.50.1000 5 231 7.3E-78 T 14-10-2018 IPR023214 HAD superfamily RY45_13760 cfae2a43cd8bb790cc4554dc4d7adfad 249 Gene3D G3DSA:3.40.50.1000 70 173 7.3E-78 T 14-10-2018 IPR023214 HAD superfamily RY45_13760 cfae2a43cd8bb790cc4554dc4d7adfad 249 SUPERFAMILY SSF56784 1 246 1.38E-60 T 14-10-2018 IPR036412 HAD-like superfamily RY45_13760 cfae2a43cd8bb790cc4554dc4d7adfad 249 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 5 222 4.4E-56 T 14-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RY45_13760 cfae2a43cd8bb790cc4554dc4d7adfad 249 Pfam PF13344 Haloacid dehalogenase-like hydrolase 5 104 8.3E-22 T 14-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RY45_13760 cfae2a43cd8bb790cc4554dc4d7adfad 249 Pfam PF13242 HAD-hyrolase-like 173 245 9.6E-20 T 14-10-2018 RY45_12185 47d17839eabffe5fb6934b1fc42773c8 260 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 33 251 41.621 T 14-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_12185 47d17839eabffe5fb6934b1fc42773c8 260 Pfam PF00912 Transglycosylase 79 245 6.7E-51 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_12185 47d17839eabffe5fb6934b1fc42773c8 260 SUPERFAMILY SSF53955 79 258 1.04E-60 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_12185 47d17839eabffe5fb6934b1fc42773c8 260 Gene3D G3DSA:1.10.3810.10 74 260 5.3E-55 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_12185 47d17839eabffe5fb6934b1fc42773c8 260 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 36 249 6.4E-83 T 14-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RY45_10215 5176d99008421f458443554e1b5a5958 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 27 319 2.0E-79 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_10215 5176d99008421f458443554e1b5a5958 327 SUPERFAMILY SSF53822 27 324 1.26E-65 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_10215 5176d99008421f458443554e1b5a5958 327 Gene3D G3DSA:3.40.50.2300 28 309 8.5E-129 T 14-10-2018 RY45_10215 5176d99008421f458443554e1b5a5958 327 Gene3D G3DSA:3.40.50.2300 133 318 8.5E-129 T 14-10-2018 RY45_10215 5176d99008421f458443554e1b5a5958 327 PIRSF PIRSF002816 2 327 6.3E-147 T 14-10-2018 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 RY45_15070 337d324a4ea773c81054ca43a3374bf9 392 SUPERFAMILY SSF118215 3 376 4.32E-76 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_15070 337d324a4ea773c81054ca43a3374bf9 392 Gene3D G3DSA:1.10.3860.10 1 380 1.8E-46 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RY45_15070 337d324a4ea773c81054ca43a3374bf9 392 PRINTS PR00173 Glutamate-aspartate symporter signature 266 292 1.0E-8 T 14-10-2018 RY45_15070 337d324a4ea773c81054ca43a3374bf9 392 PRINTS PR00173 Glutamate-aspartate symporter signature 331 351 1.0E-8 T 14-10-2018 RY45_15070 337d324a4ea773c81054ca43a3374bf9 392 PRINTS PR00173 Glutamate-aspartate symporter signature 1 18 1.0E-8 T 14-10-2018 RY45_15070 337d324a4ea773c81054ca43a3374bf9 392 PRINTS PR00173 Glutamate-aspartate symporter signature 39 59 1.0E-8 T 14-10-2018 RY45_15070 337d324a4ea773c81054ca43a3374bf9 392 Pfam PF00375 Sodium:dicarboxylate symporter family 3 376 3.0E-76 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RY45_03630 50957092d5e09789f0fb65d41ef7d797 276 Pfam PF02517 CAAX protease self-immunity 175 263 1.3E-16 T 14-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RY45_18200 e5f2f0aacc0575b5775883525d9e20a4 135 Pfam PF05932 Tir chaperone protein (CesT) family 5 110 2.0E-5 T 14-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 RY45_18200 e5f2f0aacc0575b5775883525d9e20a4 135 Gene3D G3DSA:3.30.1460.10 1 111 4.7E-16 T 14-10-2018 RY45_18200 e5f2f0aacc0575b5775883525d9e20a4 135 SUPERFAMILY SSF69635 2 120 5.1E-13 T 14-10-2018 RY45_18200 e5f2f0aacc0575b5775883525d9e20a4 135 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 2 25 6.4E-5 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 RY45_18200 e5f2f0aacc0575b5775883525d9e20a4 135 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 74 92 6.4E-5 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 RY45_18200 e5f2f0aacc0575b5775883525d9e20a4 135 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 92 110 6.4E-5 T 14-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 RY45_21890 7b0f65b40adf573b340f889c1634df5c 202 Gene3D G3DSA:3.40.30.10 19 200 7.3E-50 T 14-10-2018 RY45_21890 7b0f65b40adf573b340f889c1634df5c 202 SUPERFAMILY SSF52833 21 199 1.04E-42 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_21890 7b0f65b40adf573b340f889c1634df5c 202 Pfam PF01323 DSBA-like thioredoxin domain 42 179 2.6E-21 T 14-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 RY45_21890 7b0f65b40adf573b340f889c1634df5c 202 PIRSF PIRSF001488 1 201 2.2E-62 T 14-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 SMART SM00345 9 68 2.0E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 SMART SM00866 89 228 1.7E-34 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 SUPERFAMILY SSF46785 3 72 1.57E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 2.2E-19 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 SUPERFAMILY SSF64288 56 232 1.73E-42 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 Pfam PF07702 UTRA domain 89 226 5.1E-34 T 14-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 TIGRFAM TIGR03337 phnR: phosphonate utilization transcriptional regulator PhnR 4 234 2.6E-123 T 14-10-2018 IPR017722 Phosphonate utilization transcriptional regulator PhnR RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 Gene3D G3DSA:1.10.10.10 1 73 1.0E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 Gene3D G3DSA:3.40.1410.10 74 233 7.5E-34 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 4.0E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_10385 2d7cfd2c4dbb0b2240c4d4e32b090edc 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 4.0E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RY45_01325 8c1149a63a977428d1ceb988e573e7d4 112 Pfam PF01588 Putative tRNA binding domain 15 109 1.7E-28 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RY45_01325 8c1149a63a977428d1ceb988e573e7d4 112 SUPERFAMILY SSF50249 5 111 5.14E-31 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_01325 8c1149a63a977428d1ceb988e573e7d4 112 Gene3D G3DSA:2.40.50.140 2 112 5.0E-34 T 14-10-2018 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 SUPERFAMILY SSF55681 8 292 7.37E-134 T 14-10-2018 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 1.6E-150 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 300 3.7E-176 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 Gene3D G3DSA:3.30.930.10 1 214 2.9E-111 T 14-10-2018 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.711 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.2E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.2E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.2E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.2E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.2E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.2E-71 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RY45_00930 36837a01673e0c0272ef25e3e662e0a8 309 Gene3D G3DSA:1.20.58.180 215 297 7.3E-34 T 14-10-2018 RY45_19280 0a6d683a2d31e134d7f5c7b7a93a6eba 445 Pfam PF01551 Peptidase family M23 318 411 2.2E-31 T 14-10-2018 IPR016047 Peptidase M23 RY45_19280 0a6d683a2d31e134d7f5c7b7a93a6eba 445 Gene3D G3DSA:3.10.450.350 92 179 1.1E-18 T 14-10-2018 RY45_19280 0a6d683a2d31e134d7f5c7b7a93a6eba 445 Gene3D G3DSA:3.10.450.350 184 287 4.3E-34 T 14-10-2018 RY45_19280 0a6d683a2d31e134d7f5c7b7a93a6eba 445 Gene3D G3DSA:2.70.70.10 288 418 9.1E-49 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_19280 0a6d683a2d31e134d7f5c7b7a93a6eba 445 SUPERFAMILY SSF51261 167 414 3.03E-72 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_19280 0a6d683a2d31e134d7f5c7b7a93a6eba 445 Pfam PF04225 Opacity-associated protein A LysM-like domain 96 175 3.8E-9 T 14-10-2018 IPR007340 Opacity-associated protein A RY45_07355 246019c34af241c7de846494216fdba1 163 SUPERFAMILY SSF82093 30 143 2.62E-38 T 14-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 RY45_07355 246019c34af241c7de846494216fdba1 163 Gene3D G3DSA:2.40.50.140 30 144 7.8E-40 T 14-10-2018 RY45_07355 246019c34af241c7de846494216fdba1 163 Pfam PF03100 CcmE 4 138 1.4E-44 T 14-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 RY45_07355 246019c34af241c7de846494216fdba1 163 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 148 31.543 T 14-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 RY45_10535 26396024a33b98dc02eee11ec7fe3572 199 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 8 170 9.1E-47 T 14-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 RY45_10535 26396024a33b98dc02eee11ec7fe3572 199 SUPERFAMILY SSF52833 50 171 4.13E-30 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_10535 26396024a33b98dc02eee11ec7fe3572 199 Pfam PF08534 Redoxin 37 153 1.0E-9 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 RY45_10535 26396024a33b98dc02eee11ec7fe3572 199 Gene3D G3DSA:3.40.30.10 26 178 6.9E-30 T 14-10-2018 RY45_13920 5958654cfddc20fb6730b76d00cce2f1 133 Gene3D G3DSA:2.60.40.2990 17 133 6.2E-36 T 14-10-2018 RY45_13920 5958654cfddc20fb6730b76d00cce2f1 133 TIGRFAM TIGR02567 YscW: type III secretion system chaperone YscW 7 132 9.3E-28 T 14-10-2018 IPR013400 Type III secretion system chaperone, YscW RY45_13920 5958654cfddc20fb6730b76d00cce2f1 133 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 27 112 3.5E-9 T 14-10-2018 IPR039366 YscW/ExsB RY45_13210 86cd60587b9264580beb929b8ed78506 274 Pfam PF03239 Iron permease FTR1 family 1 262 2.3E-35 T 14-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 SMART SM00354 1 71 9.8E-36 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 SUPERFAMILY SSF53822 61 332 2.75E-94 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.8E-20 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 Gene3D G3DSA:3.40.50.2300 69 322 1.4E-90 T 14-10-2018 RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 Gene3D G3DSA:3.40.50.2300 161 290 1.4E-90 T 14-10-2018 RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 Pfam PF13377 Periplasmic binding protein-like domain 169 330 1.6E-44 T 14-10-2018 RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 SUPERFAMILY SSF47413 1 59 5.95E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_11295 9eb6bd5e56e4fb3dba9fdbad02ebfae4 334 Gene3D G3DSA:1.10.260.40 3 59 7.9E-23 T 14-10-2018 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 Gene3D G3DSA:1.20.1250.20 1 385 7.2E-64 T 14-10-2018 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 ProSitePatterns PS00216 Sugar transport proteins signature 1. 63 79 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 301 321 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 16 32 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 76 100 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 276 297 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 248 268 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 336 359 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 161 181 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 133 155 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 219 236 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 366 385 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 45 64 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 PRINTS PR01035 Tetracycline resistance protein signature 103 124 1.4E-153 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 Pfam PF07690 Major Facilitator Superfamily 13 225 1.5E-29 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_02955 1f7584b66edffa9ac05c84ae33970e63 396 SUPERFAMILY SSF103473 6 385 1.83E-58 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_10100 a0c890a40cb78cbcfad1e867547e7b13 78 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 7 77 1.3E-25 T 14-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 RY45_10100 a0c890a40cb78cbcfad1e867547e7b13 78 Pfam PF06667 Phage shock protein B 7 76 2.1E-29 T 14-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 RY45_16585 0ae5ebc54c964a079960c3b209b953cb 212 Gene3D G3DSA:3.40.50.150 46 203 4.4E-16 T 14-10-2018 RY45_16585 0ae5ebc54c964a079960c3b209b953cb 212 Pfam PF13489 Methyltransferase domain 63 198 1.8E-23 T 14-10-2018 RY45_16585 0ae5ebc54c964a079960c3b209b953cb 212 SUPERFAMILY SSF53335 59 195 3.31E-22 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_21445 94d8cca77fc62b6af45433b2ab76784b 279 Gene3D G3DSA:3.30.70.1070 197 279 6.2E-23 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RY45_21445 94d8cca77fc62b6af45433b2ab76784b 279 Pfam PF05036 Sporulation related domain 202 275 3.5E-13 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 RY45_21445 94d8cca77fc62b6af45433b2ab76784b 279 SUPERFAMILY SSF110997 201 276 8.11E-15 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RY45_10250 6a423a7598f740b0434611b87d048692 89 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_10250 6a423a7598f740b0434611b87d048692 89 Pfam PF01197 Ribosomal protein L31 1 79 1.1E-25 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_10250 6a423a7598f740b0434611b87d048692 89 PRINTS PR01249 Ribosomal protein L31 signature 60 78 3.5E-15 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_10250 6a423a7598f740b0434611b87d048692 89 PRINTS PR01249 Ribosomal protein L31 signature 45 60 3.5E-15 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_10250 6a423a7598f740b0434611b87d048692 89 PRINTS PR01249 Ribosomal protein L31 signature 2 19 3.5E-15 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_10250 6a423a7598f740b0434611b87d048692 89 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 1.3E-18 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_10250 6a423a7598f740b0434611b87d048692 89 Gene3D G3DSA:2.30.170.50 1 84 3.8E-23 T 14-10-2018 RY45_10250 6a423a7598f740b0434611b87d048692 89 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 28.591 T 14-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 RY45_10250 6a423a7598f740b0434611b87d048692 89 SUPERFAMILY SSF143800 1 82 5.1E-23 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_11630 d0645c01b71d0ec72d5a625de5b7fb2b 173 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 4.4E-16 T 14-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD RY45_01085 8a14a04db68349742759c35bfc764cd6 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 58 4.4E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_01085 8a14a04db68349742759c35bfc764cd6 198 SUPERFAMILY SSF46689 6 72 2.36E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_01085 8a14a04db68349742759c35bfc764cd6 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 196 40.885 T 14-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 RY45_01085 8a14a04db68349742759c35bfc764cd6 198 Gene3D G3DSA:1.10.357.10 8 196 1.1E-64 T 14-10-2018 RY45_06640 f1f17e5216600a96de581db2faa603e7 230 Pfam PF00072 Response regulator receiver domain 7 116 3.0E-18 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_06640 f1f17e5216600a96de581db2faa603e7 230 PIRSF PIRSF006171 2 230 1.5E-65 T 14-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 RY45_06640 f1f17e5216600a96de581db2faa603e7 230 SMART SM00448 4 117 1.3E-16 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_06640 f1f17e5216600a96de581db2faa603e7 230 Pfam PF12431 Transcriptional regulator 134 162 7.3E-6 T 14-10-2018 IPR028141 Transcriptional regulator RY45_06640 f1f17e5216600a96de581db2faa603e7 230 Gene3D G3DSA:3.40.50.12740 5 210 5.8E-26 T 14-10-2018 RY45_06640 f1f17e5216600a96de581db2faa603e7 230 SUPERFAMILY SSF52172 2 129 1.85E-27 T 14-10-2018 IPR011006 CheY-like superfamily RY45_12745 12037e62d99f7f9fb489dda7c473507d 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 137 2.9E-28 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RY45_12745 12037e62d99f7f9fb489dda7c473507d 139 Gene3D G3DSA:3.30.420.270 64 133 1.9E-10 T 14-10-2018 RY45_02010 a147c2e18e06bcf108992285dbd53098 199 SUPERFAMILY SSF52218 1 180 1.12E-49 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_02010 a147c2e18e06bcf108992285dbd53098 199 Pfam PF02525 Flavodoxin-like fold 2 171 2.4E-43 T 14-10-2018 IPR003680 Flavodoxin-like fold RY45_02010 a147c2e18e06bcf108992285dbd53098 199 Gene3D G3DSA:3.40.50.360 2 179 1.1E-53 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_13440 5179482ca804b65e860ba7ed5d22475c 305 Pfam PF05661 Protein of unknown function (DUF808) 4 293 5.0E-115 T 14-10-2018 IPR008526 Inner membrane protein YedI RY45_13440 5179482ca804b65e860ba7ed5d22475c 305 PIRSF PIRSF016660 1 305 8.6E-121 T 14-10-2018 IPR008526 Inner membrane protein YedI RY45_04345 7408e081d7d6a989f15a887b6d16750d 178 SUPERFAMILY SSF55729 10 135 5.15E-16 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_04345 7408e081d7d6a989f15a887b6d16750d 178 Gene3D G3DSA:3.40.630.30 3 155 4.3E-40 T 14-10-2018 RY45_04345 7408e081d7d6a989f15a887b6d16750d 178 Pfam PF00583 Acetyltransferase (GNAT) family 16 126 1.9E-8 T 14-10-2018 IPR000182 GNAT domain RY45_18675 e8e16447245bd79fd9fa2a6b28b942a2 518 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 6.0E-181 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RY45_18675 e8e16447245bd79fd9fa2a6b28b942a2 518 PIRSF PIRSF006446 2 334 1.2E-117 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RY45_18675 e8e16447245bd79fd9fa2a6b28b942a2 518 PIRSF PIRSF006446 341 517 1.8E-33 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RY45_05165 6893d9de7f426c96e1c9c1137edcac9d 564 Gene3D G3DSA:3.30.300.30 454 557 2.3E-31 T 14-10-2018 RY45_05165 6893d9de7f426c96e1c9c1137edcac9d 564 SUPERFAMILY SSF56801 15 555 1.44E-155 T 14-10-2018 RY45_05165 6893d9de7f426c96e1c9c1137edcac9d 564 Pfam PF13193 AMP-binding enzyme C-terminal domain 466 541 4.3E-18 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_05165 6893d9de7f426c96e1c9c1137edcac9d 564 Pfam PF00501 AMP-binding enzyme 25 457 2.7E-105 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_05165 6893d9de7f426c96e1c9c1137edcac9d 564 Gene3D G3DSA:3.40.50.12780 17 453 1.2E-118 T 14-10-2018 RY45_05165 6893d9de7f426c96e1c9c1137edcac9d 564 ProSitePatterns PS00455 Putative AMP-binding domain signature. 207 218 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_18655 4d9fa2dc0f5dc7224d8e70223e99b43a 135 Pfam PF03061 Thioesterase superfamily 19 103 2.6E-18 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RY45_18655 4d9fa2dc0f5dc7224d8e70223e99b43a 135 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 127 9.2E-46 T 14-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 RY45_18655 4d9fa2dc0f5dc7224d8e70223e99b43a 135 PIRSF PIRSF003230 1 135 1.6E-44 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RY45_18655 4d9fa2dc0f5dc7224d8e70223e99b43a 135 Gene3D G3DSA:3.10.129.10 3 134 3.3E-41 T 14-10-2018 RY45_18655 4d9fa2dc0f5dc7224d8e70223e99b43a 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 8 124 3.9E-37 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RY45_18655 4d9fa2dc0f5dc7224d8e70223e99b43a 135 SUPERFAMILY SSF54637 3 130 2.72E-40 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_13850 6cc76a688bc76c3290f29ade3a9f1951 404 Pfam PF07690 Major Facilitator Superfamily 24 236 2.9E-24 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_13850 6cc76a688bc76c3290f29ade3a9f1951 404 Pfam PF07690 Major Facilitator Superfamily 248 395 3.0E-15 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_13850 6cc76a688bc76c3290f29ade3a9f1951 404 Gene3D G3DSA:1.20.1250.20 17 207 3.7E-22 T 14-10-2018 RY45_13850 6cc76a688bc76c3290f29ade3a9f1951 404 Gene3D G3DSA:1.20.1250.20 239 404 2.9E-22 T 14-10-2018 RY45_13850 6cc76a688bc76c3290f29ade3a9f1951 404 ProSitePatterns PS00216 Sugar transport proteins signature 1. 74 91 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RY45_13850 6cc76a688bc76c3290f29ade3a9f1951 404 SUPERFAMILY SSF103473 14 398 1.7E-63 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_05855 45ae77c3b8f57f37500a0c6f75322070 182 Pfam PF11355 Protein of unknown function (DUF3157) 56 179 4.1E-20 T 14-10-2018 IPR021501 Protein of unknown function DUF3157 RY45_05855 45ae77c3b8f57f37500a0c6f75322070 182 Pfam PF11355 Protein of unknown function (DUF3157) 7 55 1.3E-11 T 14-10-2018 IPR021501 Protein of unknown function DUF3157 RY45_19950 c575f97add5de962ef2c47ddc183a2b8 464 SUPERFAMILY SSF56176 19 197 1.42E-29 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RY45_19950 c575f97add5de962ef2c47ddc183a2b8 464 Pfam PF01565 FAD binding domain 34 168 3.4E-20 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RY45_19950 c575f97add5de962ef2c47ddc183a2b8 464 Pfam PF04030 D-arabinono-1,4-lactone oxidase 191 458 5.7E-41 T 14-10-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 RY45_19950 c575f97add5de962ef2c47ddc183a2b8 464 Gene3D G3DSA:1.10.45.10 429 463 6.2E-6 T 14-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RY45_19950 c575f97add5de962ef2c47ddc183a2b8 464 Gene3D G3DSA:3.30.43.10 13 87 1.8E-8 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RY45_19950 c575f97add5de962ef2c47ddc183a2b8 464 Gene3D G3DSA:3.30.70.2520 325 424 1.7E-8 T 14-10-2018 RY45_19950 c575f97add5de962ef2c47ddc183a2b8 464 Gene3D G3DSA:3.30.465.10 89 211 2.2E-26 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RY45_13505 71ed5587a01a50add877f65f380cd2e5 447 SUPERFAMILY SSF51338 1 438 3.6E-33 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_13505 71ed5587a01a50add877f65f380cd2e5 447 Gene3D G3DSA:2.30.40.10 6 429 7.4E-139 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RY45_13505 71ed5587a01a50add877f65f380cd2e5 447 Gene3D G3DSA:3.20.20.140 55 414 7.4E-139 T 14-10-2018 RY45_13505 71ed5587a01a50add877f65f380cd2e5 447 ProSitePatterns PS00483 Dihydroorotase signature 2. 310 321 - T 14-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RY45_13505 71ed5587a01a50add877f65f380cd2e5 447 Pfam PF01979 Amidohydrolase family 51 427 1.0E-17 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RY45_13505 71ed5587a01a50add877f65f380cd2e5 447 SUPERFAMILY SSF51556 54 375 6.81E-91 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_09715 371b8c414106e1c5be12bdbb39c77891 252 Pfam PF01618 MotA/TolQ/ExbB proton channel family 98 216 2.1E-24 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_14150 8fef072cf4ed7851dbeefb0de825ba66 270 Pfam PF03618 Kinase/pyrophosphorylase 4 260 3.8E-76 T 14-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 RY45_14150 8fef072cf4ed7851dbeefb0de825ba66 270 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 1 269 74.001 T 14-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein RY45_03650 b2a40b828cab91f7adcb46c9602f7daf 420 Pfam PF02447 GntP family permease 9 414 7.7E-24 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 SUPERFAMILY SSF116726 203 271 1.09E-8 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 553 55.89 T 14-10-2018 IPR023018 Transport protein YidE, putative RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 3.4E-45 T 14-10-2018 IPR006512 YidE/YbjL duplication RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 6.3E-36 T 14-10-2018 IPR006512 YidE/YbjL duplication RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 Pfam PF02080 TrkA-C domain 212 273 7.1E-8 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 Pfam PF02080 TrkA-C domain 291 358 2.0E-9 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 Gene3D G3DSA:3.30.70.1450 281 359 2.7E-11 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 Gene3D G3DSA:3.30.70.1450 197 273 3.8E-10 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 Pfam PF06826 Predicted Permease Membrane Region 374 546 1.8E-45 T 14-10-2018 IPR006512 YidE/YbjL duplication RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 Pfam PF06826 Predicted Permease Membrane Region 11 180 2.1E-42 T 14-10-2018 IPR006512 YidE/YbjL duplication RY45_17955 8ed3a2a512725b66bdd7ee296258c34e 553 SUPERFAMILY SSF116726 285 360 9.55E-14 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_00360 a945c0d8adcad46f90b16c9efd233b10 164 PIRSF PIRSF029208 1 146 2.7E-49 T 14-10-2018 IPR016912 Bacteriophage P2, GpU RY45_00360 a945c0d8adcad46f90b16c9efd233b10 164 Pfam PF06995 Phage P2 GpU 6 124 3.2E-38 T 14-10-2018 IPR009734 Myoviridae, GpU RY45_02070 f5a143e9feba36b12223e32f783d1997 104 Pfam PF09413 Putative prokaryotic signal transducing protein 4 70 1.0E-15 T 14-10-2018 IPR018551 Domain of unknown function DUF2007 RY45_13120 34db5251c7c2a97682c123271eb31c31 106 Pfam PF13466 STAS domain 15 92 1.6E-7 T 14-10-2018 IPR002645 STAS domain RY45_13120 34db5251c7c2a97682c123271eb31c31 106 Gene3D G3DSA:3.30.750.24 1 95 5.4E-8 T 14-10-2018 IPR036513 STAS domain superfamily RY45_13120 34db5251c7c2a97682c123271eb31c31 106 SUPERFAMILY SSF52091 1 93 1.49E-9 T 14-10-2018 IPR036513 STAS domain superfamily RY45_03940 96b6d2e03fa287307e15fc8cbead3e9f 702 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 2.0E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03940 96b6d2e03fa287307e15fc8cbead3e9f 702 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 4.3E-4 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_10110 4d23f74e730566a8586ddd4057f87618 468 Pfam PF04317 YcjX-like family, DUF463 29 467 8.0E-176 T 14-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein RY45_10110 4d23f74e730566a8586ddd4057f87618 468 SUPERFAMILY SSF52540 9 145 8.59E-5 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10110 4d23f74e730566a8586ddd4057f87618 468 PIRSF PIRSF019381 3 468 1.0E-185 T 14-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein RY45_16750 f92bdd344a3fe9158d82e1b1b96aa93f 47 Gene3D G3DSA:3.40.50.300 1 40 2.6E-8 T 14-10-2018 RY45_14725 39a68d832bc813ccb6c7b68425aab47e 191 Gene3D G3DSA:1.10.4060.10 116 190 3.9E-6 T 14-10-2018 RY45_14725 39a68d832bc813ccb6c7b68425aab47e 191 SMART SM00464 5 187 4.1E-4 T 14-10-2018 IPR003111 Lon, substrate-binding domain RY45_14725 39a68d832bc813ccb6c7b68425aab47e 191 Gene3D G3DSA:2.30.130.40 3 112 6.5E-25 T 14-10-2018 RY45_14725 39a68d832bc813ccb6c7b68425aab47e 191 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 6 176 2.0E-12 T 14-10-2018 IPR003111 Lon, substrate-binding domain RY45_14725 39a68d832bc813ccb6c7b68425aab47e 191 SUPERFAMILY SSF88697 6 189 2.39E-46 T 14-10-2018 IPR015947 PUA-like superfamily RY45_13725 416062758ad522ed7e17c318fed3439b 153 Gene3D G3DSA:3.10.129.10 5 150 3.3E-59 T 14-10-2018 RY45_13725 416062758ad522ed7e17c318fed3439b 153 SUPERFAMILY SSF54637 15 143 2.2E-32 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_13725 416062758ad522ed7e17c318fed3439b 153 Pfam PF03061 Thioesterase superfamily 57 133 6.5E-16 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RY45_13725 416062758ad522ed7e17c318fed3439b 153 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 26 140 2.5E-39 T 14-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RY45_04340 8003d158c1ccb023b60153c2f0b04909 719 Pfam PF05170 AsmA family 4 603 5.2E-78 T 14-10-2018 IPR007844 AsmA RY45_14190 3f233775f22ddbf0390ea99cc01b0b65 253 Gene3D G3DSA:3.10.620.30 50 240 1.1E-73 T 14-10-2018 RY45_14190 3f233775f22ddbf0390ea99cc01b0b65 253 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 90 195 2.5E-11 T 14-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted RY45_02695 5f88329ea88cc4dc54c6d0fec9752c15 226 Pfam PF04340 Protein of unknown function, DUF484 11 220 1.0E-48 T 14-10-2018 IPR007435 Protein of unknown function DUF484 RY45_02695 5f88329ea88cc4dc54c6d0fec9752c15 226 Gene3D G3DSA:3.30.450.40 45 224 1.1E-36 T 14-10-2018 IPR029016 GAF-like domain superfamily RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01021 OMPA domain signature 234 256 1.1E-21 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01021 OMPA domain signature 281 297 1.1E-21 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01021 OMPA domain signature 266 281 1.1E-21 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 Pfam PF00691 OmpA family 233 324 3.5E-21 T 14-10-2018 IPR006665 OmpA-like domain RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 Gene3D G3DSA:3.30.1330.60 221 348 1.0E-40 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 SUPERFAMILY SSF103088 221 344 7.85E-31 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01022 Outer membrane protein A signature 119 135 1.0E-34 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01022 Outer membrane protein A signature 222 237 1.0E-34 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01022 Outer membrane protein A signature 323 336 1.0E-34 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01022 Outer membrane protein A signature 251 270 1.0E-34 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01022 Outer membrane protein A signature 189 203 1.0E-34 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 PRINTS PR01022 Outer membrane protein A signature 290 309 1.0E-34 T 14-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 Gene3D G3DSA:2.40.160.20 12 220 1.6E-59 T 14-10-2018 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 Pfam PF01389 OmpA-like transmembrane domain 23 203 6.3E-44 T 14-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 ProSitePatterns PS01068 OmpA-like domain. 268 312 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RY45_19615 2d290c308cf3cf54430e5b4f0418081c 352 SUPERFAMILY SSF56925 23 205 1.2E-34 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RY45_01135 738e8ae8470518feb369c49c55685c14 262 Gene3D G3DSA:3.90.550.10 1 178 4.2E-25 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_01135 738e8ae8470518feb369c49c55685c14 262 SUPERFAMILY SSF53448 3 143 5.63E-27 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_01135 738e8ae8470518feb369c49c55685c14 262 Pfam PF00535 Glycosyl transferase family 2 9 131 4.0E-17 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RY45_05870 ffefe6a929e2ab7e32abaac9c0717135 295 Pfam PF13411 MerR HTH family regulatory protein 17 85 4.4E-18 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_05870 ffefe6a929e2ab7e32abaac9c0717135 295 Gene3D G3DSA:1.10.1660.10 12 84 9.7E-26 T 14-10-2018 RY45_05870 ffefe6a929e2ab7e32abaac9c0717135 295 SMART SM00422 17 86 1.5E-20 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RY45_05870 ffefe6a929e2ab7e32abaac9c0717135 295 SUPERFAMILY SSF46955 17 105 1.56E-19 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily RY45_21950 a4030c699236d979c2c8ff114dc18629 342 SUPERFAMILY SSF53756 33 340 9.89E-36 T 14-10-2018 RY45_21950 a4030c699236d979c2c8ff114dc18629 342 Gene3D G3DSA:3.40.50.2000 246 341 7.1E-8 T 14-10-2018 RY45_21950 a4030c699236d979c2c8ff114dc18629 342 Gene3D G3DSA:3.40.50.2000 27 186 1.8E-17 T 14-10-2018 RY45_08985 d47705d1b17f73548ee4ff5f78838d0e 375 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 375 8.8E-118 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RY45_08985 d47705d1b17f73548ee4ff5f78838d0e 375 PIRSF PIRSF000267 1 374 3.2E-124 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RY45_08985 d47705d1b17f73548ee4ff5f78838d0e 375 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 6 357 6.8E-90 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RY45_04440 ceb04d87b95df6a864b1f6f29a564ff3 145 Pfam PF05232 Chlorhexidine efflux transporter 2 63 2.6E-25 T 14-10-2018 IPR007896 Chlorhexidine efflux transporter RY45_04440 ceb04d87b95df6a864b1f6f29a564ff3 145 Pfam PF05232 Chlorhexidine efflux transporter 72 134 2.4E-23 T 14-10-2018 IPR007896 Chlorhexidine efflux transporter RY45_21225 76f89ee2bb5f2ab646861f4ec9aea4e8 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 329 1.6E-176 T 14-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 RY45_21225 76f89ee2bb5f2ab646861f4ec9aea4e8 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 44.688 T 14-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 RY45_21225 76f89ee2bb5f2ab646861f4ec9aea4e8 330 Gene3D G3DSA:3.30.930.10 1 330 6.4E-140 T 14-10-2018 RY45_21225 76f89ee2bb5f2ab646861f4ec9aea4e8 330 SUPERFAMILY SSF55681 8 329 9.95E-98 T 14-10-2018 RY45_21225 76f89ee2bb5f2ab646861f4ec9aea4e8 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 2.5E-94 T 14-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 RY45_21225 76f89ee2bb5f2ab646861f4ec9aea4e8 330 PIRSF PIRSF001555 1 329 3.9E-148 T 14-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 RY45_07220 391dc279d4c61256c56a171b6ef5ac49 671 Gene3D G3DSA:3.30.750.140 519 633 4.5E-29 T 14-10-2018 IPR038610 FliK-like, C-terminal domain superfamily RY45_07220 391dc279d4c61256c56a171b6ef5ac49 671 PRINTS PR01007 Flagellar hook-length control protein signature 586 609 1.5E-7 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 RY45_07220 391dc279d4c61256c56a171b6ef5ac49 671 PRINTS PR01007 Flagellar hook-length control protein signature 571 586 1.5E-7 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 RY45_07220 391dc279d4c61256c56a171b6ef5ac49 671 PRINTS PR01007 Flagellar hook-length control protein signature 277 294 1.5E-7 T 14-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 RY45_07220 391dc279d4c61256c56a171b6ef5ac49 671 Pfam PF02120 Flagellar hook-length control protein FliK 537 621 1.3E-20 T 14-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal RY45_13780 55c22bfac81bac474724bd8acc29b66b 166 SUPERFAMILY SSF52833 45 136 4.2E-17 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_13780 55c22bfac81bac474724bd8acc29b66b 166 Pfam PF13899 Thioredoxin-like 44 128 8.9E-14 T 14-10-2018 RY45_13780 55c22bfac81bac474724bd8acc29b66b 166 Gene3D G3DSA:3.40.30.10 32 159 4.9E-27 T 14-10-2018 RY45_07475 ef8536edc57b627f48ab8442989011d3 101 SUPERFAMILY SSF52794 2 98 8.02E-35 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RY45_07475 ef8536edc57b627f48ab8442989011d3 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 95 1.7E-20 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RY45_07475 ef8536edc57b627f48ab8442989011d3 101 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 5 86 2.6E-33 T 14-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 RY45_07475 ef8536edc57b627f48ab8442989011d3 101 Gene3D G3DSA:3.40.50.2300 1 100 2.5E-38 T 14-10-2018 RY45_14530 dca3ed0620f6ec015b882bc88bcfde3e 663 Pfam PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB 62 663 6.4E-165 T 14-10-2018 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB RY45_14530 dca3ed0620f6ec015b882bc88bcfde3e 663 SUPERFAMILY SSF56935 127 455 1.26E-7 T 14-10-2018 RY45_14530 dca3ed0620f6ec015b882bc88bcfde3e 663 TIGRFAM TIGR03509 OMP_MtrB_PioB: decaheme-associated outer membrane protein, MtrB/PioB family 54 663 9.1E-207 T 14-10-2018 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB RY45_14530 dca3ed0620f6ec015b882bc88bcfde3e 663 SUPERFAMILY SSF56935 431 663 1.43E-6 T 14-10-2018 RY45_15610 4a0068b62dd7bb0cf9d0e91566cd8964 138 Pfam PF11697 Protein of unknown function (DUF3293) 30 103 4.1E-18 T 14-10-2018 IPR021710 Protein of unknown function DUF3293 RY45_06235 37446a04b02916267c544af84fd6693e 99 Pfam PF11743 Protein of unknown function (DUF3301) 5 93 5.4E-27 T 14-10-2018 IPR021732 Protein of unknown function DUF3301 RY45_20290 06f062035f76d43289e569c6fd37d347 91 SUPERFAMILY SSF101498 1 88 1.11E-12 T 14-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily RY45_20290 06f062035f76d43289e569c6fd37d347 91 Pfam PF04316 Anti-sigma-28 factor, FlgM 36 87 4.4E-10 T 14-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal RY45_20290 06f062035f76d43289e569c6fd37d347 91 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 89 7.9E-18 T 14-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 RY45_17415 4db13bc739f35db19174959e63ccacf7 113 Pfam PF11333 Protein of unknown function (DUF3135) 2 82 3.0E-30 T 14-10-2018 IPR021482 Protein of unknown function DUF3135 RY45_12030 ee148083ed796cdf50a58b3262e37b9d 399 TIGRFAM TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family 23 392 9.9E-187 T 14-10-2018 IPR010081 Diaminopropionate ammonia-lyase GO:0008838|GO:0030170 RY45_12030 ee148083ed796cdf50a58b3262e37b9d 399 Gene3D G3DSA:3.40.50.1100 76 194 3.0E-151 T 14-10-2018 RY45_12030 ee148083ed796cdf50a58b3262e37b9d 399 SUPERFAMILY SSF53686 33 349 1.96E-59 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_12030 ee148083ed796cdf50a58b3262e37b9d 399 TIGRFAM TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase 6 393 8.3E-187 T 14-10-2018 IPR019871 Diaminopropionate ammonia-lyase, subgroup GO:0008838 RY45_12030 ee148083ed796cdf50a58b3262e37b9d 399 Gene3D G3DSA:3.40.50.1100 33 390 3.0E-151 T 14-10-2018 RY45_12030 ee148083ed796cdf50a58b3262e37b9d 399 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 41 348 5.4E-51 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_00620 9c385d064883b9a8cada2c0f993c58d6 356 Gene3D G3DSA:1.10.443.10 175 346 1.7E-42 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_00620 9c385d064883b9a8cada2c0f993c58d6 356 SUPERFAMILY SSF56349 64 336 3.06E-43 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_00620 9c385d064883b9a8cada2c0f993c58d6 356 Pfam PF00589 Phage integrase family 271 327 1.3E-11 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_00620 9c385d064883b9a8cada2c0f993c58d6 356 Pfam PF00589 Phage integrase family 180 251 2.7E-6 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_08050 19a76594ce22ea898c6dac3927309f2d 229 Gene3D G3DSA:3.30.1380.10 10 198 3.3E-34 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RY45_08050 19a76594ce22ea898c6dac3927309f2d 229 SUPERFAMILY SSF55166 17 180 2.98E-18 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RY45_08050 19a76594ce22ea898c6dac3927309f2d 229 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 22 180 2.2E-35 T 14-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 RY45_02965 b699a02f4d8f52d708ac14c881320955 213 Pfam PF00753 Metallo-beta-lactamase superfamily 52 136 6.9E-5 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_02965 b699a02f4d8f52d708ac14c881320955 213 SMART SM00849 21 205 0.0052 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_02965 b699a02f4d8f52d708ac14c881320955 213 SUPERFAMILY SSF56281 19 210 7.7E-21 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_02965 b699a02f4d8f52d708ac14c881320955 213 Gene3D G3DSA:3.60.15.10 3 212 2.0E-26 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_03340 f9ccd80c2b25d958305495df7ed0b966 271 ProSitePatterns PS00622 LuxR-type HTH domain signature. 218 245 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03340 f9ccd80c2b25d958305495df7ed0b966 271 Pfam PF00196 Bacterial regulatory proteins, luxR family 203 257 3.6E-16 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03340 f9ccd80c2b25d958305495df7ed0b966 271 SUPERFAMILY SSF46894 196 261 8.16E-18 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_03340 f9ccd80c2b25d958305495df7ed0b966 271 SMART SM00421 201 258 7.3E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03340 f9ccd80c2b25d958305495df7ed0b966 271 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 218 234 7.5E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03340 f9ccd80c2b25d958305495df7ed0b966 271 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 218 7.5E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03340 f9ccd80c2b25d958305495df7ed0b966 271 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 234 246 7.5E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_03340 f9ccd80c2b25d958305495df7ed0b966 271 Gene3D G3DSA:1.10.10.10 70 270 8.9E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00330 fa104d305fa3b50dd164624e6ceb97b7 396 SUPERFAMILY SSF103473 8 387 5.1E-47 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_00330 fa104d305fa3b50dd164624e6ceb97b7 396 Pfam PF07690 Major Facilitator Superfamily 22 331 1.7E-24 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_00330 fa104d305fa3b50dd164624e6ceb97b7 396 Gene3D G3DSA:1.20.1250.20 2 388 9.0E-40 T 14-10-2018 RY45_00910 48e2dc48cd6b1549d2a677bc4f187509 159 Pfam PF10517 Electron transfer DM13 62 157 2.1E-21 T 14-10-2018 IPR019545 DM13 domain RY45_20885 7b4cf3bba7a770ee02f421a7210fef29 257 SUPERFAMILY SSF53850 27 243 5.21E-29 T 14-10-2018 RY45_20885 7b4cf3bba7a770ee02f421a7210fef29 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 241 1.8E-19 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_20885 7b4cf3bba7a770ee02f421a7210fef29 257 Gene3D G3DSA:3.40.190.10 28 241 5.9E-21 T 14-10-2018 RY45_20885 7b4cf3bba7a770ee02f421a7210fef29 257 Gene3D G3DSA:3.40.190.10 106 202 5.9E-21 T 14-10-2018 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 Gene3D G3DSA:3.40.50.2300 180 311 4.5E-22 T 14-10-2018 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 SMART SM00260 17 157 7.4E-25 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 SUPERFAMILY SSF50341 16 161 1.44E-34 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 Gene3D G3DSA:2.30.30.40 24 142 2.2E-27 T 14-10-2018 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 Gene3D G3DSA:2.40.50.180 41 107 2.2E-27 T 14-10-2018 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 Pfam PF00072 Response regulator receiver domain 185 298 5.0E-15 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 Pfam PF01584 CheW-like domain 21 159 1.0E-35 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 SUPERFAMILY SSF52172 178 309 5.41E-23 T 14-10-2018 IPR011006 CheY-like superfamily RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 SMART SM00448 183 304 1.9E-14 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_17945 7174407f2340b931e4e6d90e3e833a9f 314 PIRSF PIRSF002867 1 311 5.6E-101 T 14-10-2018 IPR024181 Chemotaxis response regulator CheV RY45_08390 0f8dad9837188996689efc03e6c3cf0b 212 Gene3D G3DSA:3.40.50.300 5 206 2.4E-47 T 14-10-2018 RY45_08390 0f8dad9837188996689efc03e6c3cf0b 212 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_08390 0f8dad9837188996689efc03e6c3cf0b 212 SMART SM00382 26 203 7.2E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_08390 0f8dad9837188996689efc03e6c3cf0b 212 Pfam PF00005 ABC transporter 22 164 4.2E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_08390 0f8dad9837188996689efc03e6c3cf0b 212 SUPERFAMILY SSF52540 21 200 3.41E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 26 807 6.5E-273 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Gene3D G3DSA:3.10.20.310 94 174 2.0E-16 T 14-10-2018 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Gene3D G3DSA:3.10.20.310 177 266 8.5E-23 T 14-10-2018 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Gene3D G3DSA:2.40.160.50 428 807 1.3E-119 T 14-10-2018 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Gene3D G3DSA:3.10.20.310 267 348 2.5E-12 T 14-10-2018 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Gene3D G3DSA:3.10.20.310 350 427 3.4E-25 T 14-10-2018 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Pfam PF07244 Surface antigen variable number repeat 178 265 3.8E-15 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Pfam PF07244 Surface antigen variable number repeat 349 423 4.2E-15 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Pfam PF07244 Surface antigen variable number repeat 94 174 7.8E-12 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Pfam PF07244 Surface antigen variable number repeat 268 346 1.4E-7 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Pfam PF01103 Surface antigen 450 807 3.3E-85 T 14-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 PIRSF PIRSF006076 1 807 8.8E-246 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 8 807 25.387 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RY45_06335 41d9e5a80ec820bed93197afb29fc004 807 Gene3D G3DSA:3.10.20.310 22 93 1.2E-18 T 14-10-2018 RY45_10795 1ab228d9d9532bbdc8b5cf5e6d913f1d 287 Gene3D G3DSA:3.40.1190.20 1 287 2.8E-83 T 14-10-2018 IPR029056 Ribokinase-like RY45_10795 1ab228d9d9532bbdc8b5cf5e6d913f1d 287 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 286 1.7E-112 T 14-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RY45_10795 1ab228d9d9532bbdc8b5cf5e6d913f1d 287 SUPERFAMILY SSF53613 1 279 5.61E-69 T 14-10-2018 IPR029056 Ribokinase-like RY45_10795 1ab228d9d9532bbdc8b5cf5e6d913f1d 287 Pfam PF08543 Phosphomethylpyrimidine kinase 75 260 6.8E-17 T 14-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RY45_10795 1ab228d9d9532bbdc8b5cf5e6d913f1d 287 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 51.196 T 14-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 RY45_10500 2273ca65b17917696d0e364cd0f8cb5f 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 71 4.0E-11 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_10500 2273ca65b17917696d0e364cd0f8cb5f 230 Gene3D G3DSA:1.10.357.10 24 220 1.5E-23 T 14-10-2018 RY45_10500 2273ca65b17917696d0e364cd0f8cb5f 230 SUPERFAMILY SSF46689 12 98 8.98E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_10500 2273ca65b17917696d0e364cd0f8cb5f 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 3.3E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_10500 2273ca65b17917696d0e364cd0f8cb5f 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 3.3E-5 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_06350 43da4981b1c559bfa9a20596c9a6f2cb 153 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 9 149 1.2E-58 T 14-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_06350 43da4981b1c559bfa9a20596c9a6f2cb 153 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 152 35.867 T 14-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_06350 43da4981b1c559bfa9a20596c9a6f2cb 153 SUPERFAMILY SSF54637 8 149 6.54E-48 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_06350 43da4981b1c559bfa9a20596c9a6f2cb 153 Pfam PF07977 FabA-like domain 17 145 2.4E-37 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RY45_06350 43da4981b1c559bfa9a20596c9a6f2cb 153 Gene3D G3DSA:3.10.129.10 5 151 3.9E-60 T 14-10-2018 RY45_14810 b5dd1917f9324728969fd41712ec4cc8 460 Pfam PF00460 Flagella basal body rod protein 3 33 7.5E-7 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_14810 b5dd1917f9324728969fd41712ec4cc8 460 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RY45_14810 b5dd1917f9324728969fd41712ec4cc8 460 SUPERFAMILY SSF117143 80 421 1.44E-73 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RY45_14810 b5dd1917f9324728969fd41712ec4cc8 460 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 381 459 4.6E-15 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14810 b5dd1917f9324728969fd41712ec4cc8 460 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 442 4.0E-98 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RY45_14810 b5dd1917f9324728969fd41712ec4cc8 460 Pfam PF07559 Flagellar basal body protein FlaE 197 340 1.6E-26 T 14-10-2018 IPR011491 Flagellar hook protein FlgE RY45_14810 b5dd1917f9324728969fd41712ec4cc8 460 Gene3D G3DSA:2.60.98.20 157 341 1.3E-23 T 14-10-2018 IPR037058 Flagellar hook protein FlgE superfamily RY45_14350 c7cda7d5d1a5b80e6344e0f3bd3cc5ea 217 Gene3D G3DSA:3.30.70.260 125 196 3.1E-74 T 14-10-2018 RY45_14350 c7cda7d5d1a5b80e6344e0f3bd3cc5ea 217 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 1.9E-55 T 14-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 RY45_14350 c7cda7d5d1a5b80e6344e0f3bd3cc5ea 217 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 214 1.3E-64 T 14-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 RY45_14350 c7cda7d5d1a5b80e6344e0f3bd3cc5ea 217 Gene3D G3DSA:3.40.50.1360 7 207 3.1E-74 T 14-10-2018 RY45_14350 c7cda7d5d1a5b80e6344e0f3bd3cc5ea 217 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 32.317 T 14-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 RY45_14350 c7cda7d5d1a5b80e6344e0f3bd3cc5ea 217 SUPERFAMILY SSF75445 127 198 2.75E-22 T 14-10-2018 RY45_14350 c7cda7d5d1a5b80e6344e0f3bd3cc5ea 217 SUPERFAMILY SSF100950 1 147 2.36E-45 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_15805 198f0767ec625f0709418ed09c39b843 323 Pfam PF01292 Prokaryotic cytochrome b561 111 292 1.2E-20 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RY45_15805 198f0767ec625f0709418ed09c39b843 323 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 108 312 1.5E-67 T 14-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 RY45_15805 198f0767ec625f0709418ed09c39b843 323 SUPERFAMILY SSF81342 105 312 5.23E-44 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RY45_15805 198f0767ec625f0709418ed09c39b843 323 Gene3D G3DSA:1.20.950.20 104 320 1.8E-60 T 14-10-2018 RY45_12580 c2c6427a9bd252f3e43100679807e638 103 Pfam PF04341 Protein of unknown function, DUF485 10 98 3.1E-35 T 14-10-2018 IPR007436 Protein of unknown function DUF485 RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 9.0E-41 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 Gene3D G3DSA:3.40.50.620 194 514 4.0E-113 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 Pfam PF00733 Asparagine synthase 211 367 6.0E-58 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 373 2.8E-118 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 Gene3D G3DSA:3.60.20.10 2 193 1.1E-71 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 PIRSF PIRSF001589 363 515 1.3E-30 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 PIRSF PIRSF001589 1 372 1.7E-109 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 SUPERFAMILY SSF56235 1 196 5.92E-57 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_13775 e9971fe5e221709e31e1168b039f24e4 554 SUPERFAMILY SSF52402 211 478 2.09E-74 T 14-10-2018 RY45_16390 a83cf2987f52aa387393079e78157b8d 265 SMART SM01150 5 263 4.1E-124 T 14-10-2018 IPR009770 Domain of unknown function DUF1338 RY45_16390 a83cf2987f52aa387393079e78157b8d 265 Pfam PF07063 Domain of unknown function (DUF1338) 34 262 1.8E-47 T 14-10-2018 IPR009770 Domain of unknown function DUF1338 RY45_16390 a83cf2987f52aa387393079e78157b8d 265 Gene3D G3DSA:3.10.180.50 2 240 4.0E-96 T 14-10-2018 RY45_14240 c059a5b944f80a9b995ebf10e5740823 257 Gene3D G3DSA:3.40.190.10 34 246 6.1E-70 T 14-10-2018 RY45_14240 c059a5b944f80a9b995ebf10e5740823 257 SUPERFAMILY SSF53850 1 254 9.41E-68 T 14-10-2018 RY45_14240 c059a5b944f80a9b995ebf10e5740823 257 SMART SM00062 35 254 8.8E-68 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_14240 c059a5b944f80a9b995ebf10e5740823 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 252 2.4E-62 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_14240 c059a5b944f80a9b995ebf10e5740823 257 Gene3D G3DSA:3.40.190.10 118 215 6.1E-70 T 14-10-2018 RY45_15220 bb3b84172437583205f1bd2334d6f7ba 641 Gene3D G3DSA:3.50.50.60 78 155 5.1E-9 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_15220 bb3b84172437583205f1bd2334d6f7ba 641 Pfam PF13450 NAD(P)-binding Rossmann-like domain 85 141 2.0E-13 T 14-10-2018 RY45_15220 bb3b84172437583205f1bd2334d6f7ba 641 SUPERFAMILY SSF51905 80 639 1.09E-13 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RY45_11180 2c8c4adab114da6b60b3efbf542b69ec 83 Pfam PF06945 Protein of unknown function (DUF1289) 11 57 7.0E-19 T 14-10-2018 IPR010710 Protein of unknown function DUF1289 RY45_19290 9fb60d716b4f24c23922a12b79f0d246 313 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 19 307 4.8E-65 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RY45_19290 9fb60d716b4f24c23922a12b79f0d246 313 Pfam PF16868 NMT1-like family 23 306 6.6E-62 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RY45_19290 9fb60d716b4f24c23922a12b79f0d246 313 Gene3D G3DSA:3.40.190.10 107 242 2.6E-72 T 14-10-2018 RY45_19290 9fb60d716b4f24c23922a12b79f0d246 313 Gene3D G3DSA:3.40.190.10 23 306 2.6E-72 T 14-10-2018 RY45_19290 9fb60d716b4f24c23922a12b79f0d246 313 SUPERFAMILY SSF53850 19 306 1.36E-56 T 14-10-2018 RY45_10810 77ac4d728156c17fe89a518b59b6e0fb 168 Pfam PF00583 Acetyltransferase (GNAT) family 55 141 1.6E-12 T 14-10-2018 IPR000182 GNAT domain RY45_10810 77ac4d728156c17fe89a518b59b6e0fb 168 Gene3D G3DSA:3.40.630.30 2 168 1.6E-48 T 14-10-2018 RY45_10810 77ac4d728156c17fe89a518b59b6e0fb 168 SUPERFAMILY SSF55729 14 168 1.3E-25 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 SMART SM00357 6 70 7.5E-30 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 SUPERFAMILY SSF50249 3 69 7.24E-26 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 6.6E-32 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 14-10-2018 IPR019844 Cold-shock conserved site RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 PRINTS PR00050 Cold shock protein signature 28 37 7.2E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 PRINTS PR00050 Cold shock protein signature 43 61 7.2E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 PRINTS PR00050 Cold shock protein signature 7 22 7.2E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 Gene3D G3DSA:2.40.50.140 1 69 8.6E-31 T 14-10-2018 RY45_20700 b12eb6b9c8bcd5906ee307841da74921 70 PIRSF PIRSF002599 1 70 1.3E-25 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 RY45_13795 ed06e41290543060a480eb8fb3a552b9 332 Gene3D G3DSA:3.90.850.10 1 326 2.9E-133 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RY45_13795 ed06e41290543060a480eb8fb3a552b9 332 SUPERFAMILY SSF56529 77 326 9.01E-59 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RY45_13795 ed06e41290543060a480eb8fb3a552b9 332 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 82 323 1.4E-39 T 14-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RY45_02585 0cefb8d9f7eb767c4276b4ed5d5f3d42 206 Gene3D G3DSA:2.40.160.20 28 206 2.3E-10 T 14-10-2018 RY45_02585 0cefb8d9f7eb767c4276b4ed5d5f3d42 206 Pfam PF13505 Outer membrane protein beta-barrel domain 17 174 1.9E-7 T 14-10-2018 IPR027385 Outer membrane protein beta-barrel RY45_02585 0cefb8d9f7eb767c4276b4ed5d5f3d42 206 SUPERFAMILY SSF56925 28 206 4.45E-10 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RY45_08105 2d411c572daeedd453982d510c06b673 277 Pfam PF00672 HAMP domain 204 252 2.0E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_08105 2d411c572daeedd453982d510c06b673 277 SUPERFAMILY SSF158472 204 253 3.92E-6 T 14-10-2018 RY45_08105 2d411c572daeedd453982d510c06b673 277 SMART SM00304 203 256 3.5E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_08105 2d411c572daeedd453982d510c06b673 277 Gene3D G3DSA:1.10.287.130 202 274 1.1E-5 T 14-10-2018 RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 460 2.8E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 SUPERFAMILY SSF55874 325 460 6.81E-30 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 Gene3D G3DSA:3.30.565.10 317 460 3.1E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 6.5E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 6.5E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 6.5E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 421 6.5E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 Gene3D G3DSA:1.10.287.130 207 308 2.9E-6 T 14-10-2018 RY45_07165 043858582f0430ebf8bdfc9022e074a8 460 SMART SM00387 358 460 5.5E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_17010 80027a5ff9694bbaa5c7950e4c30fad4 404 Gene3D G3DSA:1.20.1250.20 11 387 4.2E-44 T 14-10-2018 RY45_17010 80027a5ff9694bbaa5c7950e4c30fad4 404 SUPERFAMILY SSF103473 11 395 1.7E-47 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_17010 80027a5ff9694bbaa5c7950e4c30fad4 404 Pfam PF07690 Major Facilitator Superfamily 16 345 2.2E-28 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_17010 80027a5ff9694bbaa5c7950e4c30fad4 404 ProSitePatterns PS00216 Sugar transport proteins signature 1. 67 83 - T 14-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RY45_19105 9a1b26bc63e908f78abbd06a8cd33056 141 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 76 140 2.7E-14 T 14-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly RY45_08210 9f5b89b3668ffbd07af7bba60bfd729e 200 Gene3D G3DSA:1.10.357.10 5 191 9.4E-50 T 14-10-2018 RY45_08210 9f5b89b3668ffbd07af7bba60bfd729e 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 4.0E-15 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_08210 9f5b89b3668ffbd07af7bba60bfd729e 200 SUPERFAMILY SSF46689 6 76 2.49E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_08210 9f5b89b3668ffbd07af7bba60bfd729e 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.7E-11 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_08210 9f5b89b3668ffbd07af7bba60bfd729e 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.7E-11 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_03995 79342d10df1ddca2c0209350caa92462 286 Pfam PF00892 EamA-like transporter family 15 146 1.1E-13 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_03995 79342d10df1ddca2c0209350caa92462 286 Pfam PF00892 EamA-like transporter family 156 279 9.2E-9 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_03995 79342d10df1ddca2c0209350caa92462 286 SUPERFAMILY SSF103481 187 281 1.57E-12 T 14-10-2018 RY45_03995 79342d10df1ddca2c0209350caa92462 286 SUPERFAMILY SSF103481 49 150 1.44E-13 T 14-10-2018 RY45_00350 6fdc30bf3afed81cb363b111f26fff15 308 Pfam PF05982 Na+-dependent bicarbonate transporter superfamily 5 303 8.0E-110 T 14-10-2018 IPR010293 Na+-dependent bicarbonate transporter superfamily RY45_13470 0a80ec47428ea277687ce66782d596ef 275 Pfam PF01636 Phosphotransferase enzyme family 21 224 1.3E-11 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase RY45_13470 0a80ec47428ea277687ce66782d596ef 275 Gene3D G3DSA:3.90.1200.10 109 275 3.7E-16 T 14-10-2018 RY45_13470 0a80ec47428ea277687ce66782d596ef 275 SUPERFAMILY SSF56112 8 271 8.6E-24 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily RY45_04220 441be0578734061398305cd33b23599d 302 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 28 293 1.9E-73 T 14-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase RY45_04220 441be0578734061398305cd33b23599d 302 SUPERFAMILY SSF102522 26 181 1.83E-55 T 14-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal RY45_04220 441be0578734061398305cd33b23599d 302 Gene3D G3DSA:2.40.30.90 187 302 7.6E-34 T 14-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal RY45_04220 441be0578734061398305cd33b23599d 302 Gene3D G3DSA:3.40.50.10790 23 186 2.5E-52 T 14-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal RY45_04220 441be0578734061398305cd33b23599d 302 SUPERFAMILY SSF101852 194 297 1.57E-24 T 14-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal RY45_04220 441be0578734061398305cd33b23599d 302 PIRSF PIRSF006779 22 299 4.2E-97 T 14-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase RY45_05740 167c8a649a83707aa3b3ada40575b7f6 193 SUPERFAMILY SSF160443 93 175 2.75E-14 T 14-10-2018 IPR036063 Smr domain superfamily RY45_05740 167c8a649a83707aa3b3ada40575b7f6 193 Gene3D G3DSA:3.30.1370.110 47 181 3.0E-42 T 14-10-2018 RY45_05740 167c8a649a83707aa3b3ada40575b7f6 193 SMART SM00463 92 175 1.2E-13 T 14-10-2018 IPR002625 Smr domain RY45_05740 167c8a649a83707aa3b3ada40575b7f6 193 Pfam PF01713 Smr domain 95 175 6.4E-21 T 14-10-2018 IPR002625 Smr domain RY45_05590 bd677592022606535a314eaddf24c316 163 Gene3D G3DSA:2.60.40.2040 43 161 4.7E-11 T 14-10-2018 RY45_05590 bd677592022606535a314eaddf24c316 163 Pfam PF04449 CS1 type fimbrial major subunit 23 155 7.0E-33 T 14-10-2018 IPR007540 Fimbrial major subunit, CS1-type GO:0009289 RY45_20565 79724bf2db17b83d16df3b1f38a030f8 90 SUPERFAMILY SSF52091 2 89 4.12E-13 T 14-10-2018 IPR036513 STAS domain superfamily RY45_20565 79724bf2db17b83d16df3b1f38a030f8 90 Pfam PF13466 STAS domain 1 76 5.4E-15 T 14-10-2018 IPR002645 STAS domain RY45_20565 79724bf2db17b83d16df3b1f38a030f8 90 Gene3D G3DSA:3.30.750.24 1 89 4.1E-11 T 14-10-2018 IPR036513 STAS domain superfamily RY45_17160 9851712f3a8a3c57e37784204506664a 137 Pfam PF01029 NusB family 7 132 7.9E-36 T 14-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RY45_17160 9851712f3a8a3c57e37784204506664a 137 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 4 135 22.759 T 14-10-2018 IPR011605 NusB antitermination factor GO:0006353 RY45_17160 9851712f3a8a3c57e37784204506664a 137 SUPERFAMILY SSF48013 3 135 7.19E-44 T 14-10-2018 IPR035926 NusB-like superfamily RY45_17160 9851712f3a8a3c57e37784204506664a 137 Gene3D G3DSA:1.10.940.10 1 137 4.9E-49 T 14-10-2018 IPR035926 NusB-like superfamily RY45_17160 9851712f3a8a3c57e37784204506664a 137 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 5 133 4.3E-44 T 14-10-2018 IPR011605 NusB antitermination factor GO:0006353 RY45_00465 8fe6acbd085e862d61c9d3a6631dbd34 156 Pfam PF05926 Phage head completion protein (GPL) 18 156 1.3E-52 T 14-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 RY45_00145 814d7e16b43748dcdbe66d5f8c243164 445 SUPERFAMILY SSF103473 18 438 3.14E-61 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_00145 814d7e16b43748dcdbe66d5f8c243164 445 Gene3D G3DSA:1.20.1250.20 21 219 3.1E-38 T 14-10-2018 RY45_00145 814d7e16b43748dcdbe66d5f8c243164 445 PIRSF PIRSF002808 9 445 2.1E-101 T 14-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RY45_00145 814d7e16b43748dcdbe66d5f8c243164 445 Gene3D G3DSA:1.20.1250.20 243 443 4.1E-34 T 14-10-2018 RY45_00145 814d7e16b43748dcdbe66d5f8c243164 445 Pfam PF07690 Major Facilitator Superfamily 37 393 1.0E-41 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_14490 4457b54176c833a3e414fa711a502514 241 Pfam PF14091 Domain of unknown function (DUF4269) 48 197 3.1E-38 T 14-10-2018 IPR025365 Protein of unknown function DUF4269 RY45_19520 941189c0435a55a452ab68f74d8bea9c 420 Gene3D G3DSA:2.60.120.330 1 419 9.3E-149 T 14-10-2018 IPR027443 Isopenicillin N synthase-like RY45_19520 941189c0435a55a452ab68f74d8bea9c 420 Pfam PF07350 Protein of unknown function (DUF1479) 14 417 1.6E-141 T 14-10-2018 IPR010856 Protein of unknown function DUF1479 RY45_19520 941189c0435a55a452ab68f74d8bea9c 420 SUPERFAMILY SSF51197 3 417 2.75E-147 T 14-10-2018 RY45_13590 02a30989f5208a06073e0a8bb9e8999c 234 Pfam PF04397 LytTr DNA-binding domain 139 231 1.6E-20 T 14-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RY45_13590 02a30989f5208a06073e0a8bb9e8999c 234 SMART SM00850 138 232 3.6E-25 T 14-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RY45_13590 02a30989f5208a06073e0a8bb9e8999c 234 SUPERFAMILY SSF52172 1 116 2.7E-28 T 14-10-2018 IPR011006 CheY-like superfamily RY45_13590 02a30989f5208a06073e0a8bb9e8999c 234 Pfam PF00072 Response regulator receiver domain 5 110 1.0E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13590 02a30989f5208a06073e0a8bb9e8999c 234 SMART SM00448 2 110 4.3E-22 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_13590 02a30989f5208a06073e0a8bb9e8999c 234 Gene3D G3DSA:3.40.50.2300 1 121 8.4E-28 T 14-10-2018 RY45_13590 02a30989f5208a06073e0a8bb9e8999c 234 Gene3D G3DSA:2.40.50.1020 141 233 1.2E-8 T 14-10-2018 RY45_16045 80ba6d899d242b634719741b2fcb80a9 462 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 21 317 1.2E-69 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RY45_16045 80ba6d899d242b634719741b2fcb80a9 462 Pfam PF16868 NMT1-like family 38 317 3.2E-67 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RY45_16045 80ba6d899d242b634719741b2fcb80a9 462 Gene3D G3DSA:3.40.190.10 125 263 9.7E-79 T 14-10-2018 RY45_16045 80ba6d899d242b634719741b2fcb80a9 462 Gene3D G3DSA:3.40.190.10 38 317 9.7E-79 T 14-10-2018 RY45_16045 80ba6d899d242b634719741b2fcb80a9 462 SUPERFAMILY SSF53850 33 319 1.19E-62 T 14-10-2018 RY45_15585 de85e31843d611b6daf8625ce7da4149 230 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 3 222 2.0E-56 T 14-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 RY45_15585 de85e31843d611b6daf8625ce7da4149 230 PIRSF PIRSF004808 1 229 4.8E-55 T 14-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 RY45_15585 de85e31843d611b6daf8625ce7da4149 230 SUPERFAMILY SSF75217 2 159 2.22E-28 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_15585 de85e31843d611b6daf8625ce7da4149 230 Gene3D G3DSA:3.40.1280.10 1 160 1.9E-51 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_15585 de85e31843d611b6daf8625ce7da4149 230 Pfam PF00588 SpoU rRNA Methylase family 3 152 1.4E-30 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RY45_05865 9937da86298bce97049001af36f84c15 314 PIRSF PIRSF037004 1 314 1.2E-129 T 14-10-2018 IPR017087 Uncharacterised conserved protein UCP037004 RY45_05865 9937da86298bce97049001af36f84c15 314 Pfam PF04463 Protein of unknown function (DUF523) 6 146 9.0E-38 T 14-10-2018 IPR007553 Domain of unknown function DUF523 RY45_05865 9937da86298bce97049001af36f84c15 314 Pfam PF08349 Protein of unknown function (DUF1722) 189 305 5.4E-44 T 14-10-2018 IPR013560 Domain of unknown function DUF1722 RY45_01910 5af070843216e074c9a822f9c15d5ded 130 Pfam PF00410 Ribosomal protein S8 5 129 1.9E-47 T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01910 5af070843216e074c9a822f9c15d5ded 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01910 5af070843216e074c9a822f9c15d5ded 130 SUPERFAMILY SSF56047 5 129 5.63E-46 T 14-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01910 5af070843216e074c9a822f9c15d5ded 130 Gene3D G3DSA:3.30.1490.10 74 130 5.2E-24 T 14-10-2018 RY45_01910 5af070843216e074c9a822f9c15d5ded 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.647 T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01910 5af070843216e074c9a822f9c15d5ded 130 Gene3D G3DSA:3.30.1370.30 2 72 4.9E-28 T 14-10-2018 RY45_14740 238327d3454bd382d682ad9bafd1dd05 303 Gene3D G3DSA:3.40.50.12300 9 302 1.5E-79 T 14-10-2018 IPR038136 Gluconeogenesis factor superfamily RY45_14740 238327d3454bd382d682ad9bafd1dd05 303 Hamap MF_00973 Gluconeogenesis factor. 8 298 31.406 T 14-10-2018 IPR010119 Gluconeogenesis factor RY45_14740 238327d3454bd382d682ad9bafd1dd05 303 SUPERFAMILY SSF142338 11 292 4.19E-84 T 14-10-2018 RY45_14740 238327d3454bd382d682ad9bafd1dd05 303 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 268 3.2E-94 T 14-10-2018 IPR010119 Gluconeogenesis factor RY45_14740 238327d3454bd382d682ad9bafd1dd05 303 Pfam PF01933 Uncharacterised protein family UPF0052 12 292 8.6E-75 T 14-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 RY45_03680 08c22e81df4143845cc3af981359faba 164 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 2 70 4.8E-5 T 14-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RY45_03680 08c22e81df4143845cc3af981359faba 164 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 124 130 - T 14-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RY45_03680 08c22e81df4143845cc3af981359faba 164 Gene3D G3DSA:3.30.160.70 1 69 2.9E-14 T 14-10-2018 RY45_03680 08c22e81df4143845cc3af981359faba 164 SUPERFAMILY SSF53155 2 78 6.28E-14 T 14-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RY45_03680 08c22e81df4143845cc3af981359faba 164 SUPERFAMILY SSF46767 73 154 6.28E-33 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RY45_03680 08c22e81df4143845cc3af981359faba 164 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 75 154 1.9E-33 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RY45_03680 08c22e81df4143845cc3af981359faba 164 Gene3D G3DSA:1.10.10.10 73 159 9.5E-37 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03680 08c22e81df4143845cc3af981359faba 164 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 5 154 41.419 T 14-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 RY45_03680 08c22e81df4143845cc3af981359faba 164 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 74 153 3.3E-37 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RY45_03575 3e3777e8b99328efd58dc52356837e0f 317 SUPERFAMILY SSF161111 21 244 1.11E-51 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RY45_03575 3e3777e8b99328efd58dc52356837e0f 317 Gene3D G3DSA:1.20.1510.10 21 243 2.7E-28 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RY45_03575 3e3777e8b99328efd58dc52356837e0f 317 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 22 314 2.5E-65 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RY45_03575 3e3777e8b99328efd58dc52356837e0f 317 Pfam PF01545 Cation efflux family 28 243 3.1E-42 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RY45_15075 ecccf8922c7deb726479b7acec34b838 122 SUPERFAMILY SSF54593 5 118 6.71E-23 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_15075 ecccf8922c7deb726479b7acec34b838 122 Gene3D G3DSA:3.10.180.10 1 119 9.9E-28 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13855 a6e19bc8ec4c385ca7255815e0638443 211 Gene3D G3DSA:3.30.2320.30 84 205 6.7E-5 T 14-10-2018 IPR038495 V-type ATPase subunit E, C-terminal domain superfamily Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 RY45_13855 a6e19bc8ec4c385ca7255815e0638443 211 Pfam PF02108 Flagellar assembly protein FliH 70 194 6.6E-19 T 14-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RY45_13855 a6e19bc8ec4c385ca7255815e0638443 211 SUPERFAMILY SSF160527 96 199 3.92E-6 T 14-10-2018 RY45_13855 a6e19bc8ec4c385ca7255815e0638443 211 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 19 187 7.5E-47 T 14-10-2018 IPR012842 Type III secretion system HrpE/YscL RY45_12085 b7ae79d73877a022994f9a0e436569b2 337 Pfam PF00092 von Willebrand factor type A domain 83 277 5.6E-20 T 14-10-2018 IPR002035 von Willebrand factor, type A RY45_12085 b7ae79d73877a022994f9a0e436569b2 337 SMART SM00327 81 252 3.4E-21 T 14-10-2018 IPR002035 von Willebrand factor, type A RY45_12085 b7ae79d73877a022994f9a0e436569b2 337 SUPERFAMILY SSF53300 81 279 7.27E-31 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_12085 b7ae79d73877a022994f9a0e436569b2 337 Gene3D G3DSA:3.40.50.410 81 284 5.7E-45 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RY45_08175 22739035f92cf0c5bccdca440bcf7add 607 Pfam PF00916 Sulfate permease family 26 392 2.1E-84 T 14-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RY45_08175 22739035f92cf0c5bccdca440bcf7add 607 SUPERFAMILY SSF52091 447 537 3.92E-10 T 14-10-2018 IPR036513 STAS domain superfamily RY45_08175 22739035f92cf0c5bccdca440bcf7add 607 Gene3D G3DSA:3.30.750.24 437 561 1.8E-19 T 14-10-2018 IPR036513 STAS domain superfamily RY45_08175 22739035f92cf0c5bccdca440bcf7add 607 Pfam PF01740 STAS domain 444 537 1.2E-13 T 14-10-2018 IPR002645 STAS domain RY45_18000 4909a8fefb8ec11b639bfc85f086b772 323 SMART SM00448 6 118 2.5E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_18000 4909a8fefb8ec11b639bfc85f086b772 323 Gene3D G3DSA:3.40.50.12740 5 157 5.6E-34 T 14-10-2018 RY45_18000 4909a8fefb8ec11b639bfc85f086b772 323 Pfam PF00072 Response regulator receiver domain 8 109 1.8E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_18000 4909a8fefb8ec11b639bfc85f086b772 323 Gene3D G3DSA:3.60.40.10 177 311 3.9E-8 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RY45_18000 4909a8fefb8ec11b639bfc85f086b772 323 SUPERFAMILY SSF52172 5 136 2.85E-36 T 14-10-2018 IPR011006 CheY-like superfamily RY45_09170 88dddb0152c55d912898c3a256ca279c 477 Gene3D G3DSA:1.25.40.10 255 475 1.2E-15 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09170 88dddb0152c55d912898c3a256ca279c 477 SUPERFAMILY SSF48452 303 444 3.07E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09170 88dddb0152c55d912898c3a256ca279c 477 Pfam PF01435 Peptidase family M48 64 249 1.0E-29 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RY45_09170 88dddb0152c55d912898c3a256ca279c 477 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 1 475 37.246 T 14-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 RY45_09170 88dddb0152c55d912898c3a256ca279c 477 Pfam PF14559 Tetratricopeptide repeat 345 408 2.5E-7 T 14-10-2018 RY45_18035 fdb06f5a312ee19ecde3ff7b54c3f1b3 468 Pfam PF02321 Outer membrane efflux protein 266 450 5.1E-23 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_18035 fdb06f5a312ee19ecde3ff7b54c3f1b3 468 Pfam PF02321 Outer membrane efflux protein 29 245 1.4E-22 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RY45_18035 fdb06f5a312ee19ecde3ff7b54c3f1b3 468 Gene3D G3DSA:1.20.1600.10 20 461 7.7E-66 T 14-10-2018 RY45_18035 fdb06f5a312ee19ecde3ff7b54c3f1b3 468 SUPERFAMILY SSF56954 5 452 1.96E-68 T 14-10-2018 RY45_06515 4119e120c5d06800b0af48bdc2fc9e97 123 Pfam PF04138 GtrA-like protein 12 122 2.6E-15 T 14-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RY45_09010 2228cc05634206c189646766ca5da706 120 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 112 1.7E-6 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_09010 2228cc05634206c189646766ca5da706 120 Gene3D G3DSA:3.10.180.10 1 118 4.8E-20 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_09010 2228cc05634206c189646766ca5da706 120 SUPERFAMILY SSF54593 6 118 6.33E-24 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 SUPERFAMILY SSF88723 6 161 7.11E-36 T 14-10-2018 IPR029060 PIN-like domain superfamily RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 SMART SM00475 4 262 2.3E-62 T 14-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 Hamap MF_01192 Flap endonuclease Xni [xni]. 5 263 45.389 T 14-10-2018 IPR022895 Flap endonuclease Xni GO:0048256 RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 SUPERFAMILY SSF47807 170 263 1.08E-21 T 14-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 262 3.0E-24 T 14-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 Gene3D G3DSA:3.40.50.1010 5 172 2.0E-50 T 14-10-2018 RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 Gene3D G3DSA:1.10.150.20 173 262 6.5E-22 T 14-10-2018 RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 SMART SM00279 173 208 3.6E-11 T 14-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RY45_06190 e74122dec1ef48064d43b803ad090a4e 267 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 7 170 1.3E-29 T 14-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RY45_10490 e8f5546e71014d111dcf56fff2f414c7 375 SUPERFAMILY SSF54631 228 358 3.95E-30 T 14-10-2018 RY45_10490 e8f5546e71014d111dcf56fff2f414c7 375 SMART SM00116 311 358 2.0E-5 T 14-10-2018 IPR000644 CBS domain RY45_10490 e8f5546e71014d111dcf56fff2f414c7 375 SMART SM00116 241 289 0.0021 T 14-10-2018 IPR000644 CBS domain RY45_10490 e8f5546e71014d111dcf56fff2f414c7 375 Pfam PF04982 HPP family 47 167 2.4E-39 T 14-10-2018 IPR007065 HPP RY45_10490 e8f5546e71014d111dcf56fff2f414c7 375 Pfam PF00571 CBS domain 234 285 3.9E-11 T 14-10-2018 IPR000644 CBS domain RY45_10490 e8f5546e71014d111dcf56fff2f414c7 375 Pfam PF00571 CBS domain 304 357 2.5E-9 T 14-10-2018 IPR000644 CBS domain RY45_10490 e8f5546e71014d111dcf56fff2f414c7 375 Gene3D G3DSA:3.10.580.10 216 360 3.3E-32 T 14-10-2018 RY45_06775 84a31df81469719f2109ba06ad6ecc6c 157 SUPERFAMILY SSF52833 1 154 1.43E-32 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_06775 84a31df81469719f2109ba06ad6ecc6c 157 Gene3D G3DSA:3.40.30.10 1 157 8.3E-54 T 14-10-2018 RY45_06775 84a31df81469719f2109ba06ad6ecc6c 157 Pfam PF08534 Redoxin 5 154 5.4E-32 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 RY45_13535 6f64d3fdc2f5fb5c6e09d93b1a092762 314 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 3 311 7.7E-125 T 14-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RY45_13535 6f64d3fdc2f5fb5c6e09d93b1a092762 314 Pfam PF03741 Integral membrane protein TerC family 77 279 1.0E-56 T 14-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 252 264 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 56 71 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 121 139 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 82 101 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 188 206 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 162 180 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 38 53 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 23 38 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 PRINTS PR01010 Flagellar P-ring protein signature 104 121 5.3E-83 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 Pfam PF02119 Flagellar P-ring protein 23 364 1.1E-137 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_14790 3dd74e95310995f40817f4bdf60f9be9 365 Hamap MF_00416 Flagellar P-ring protein [flgI]. 3 365 38.947 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_09325 921ecb4bfa8340429d125ecddbb30f00 230 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 230 46.002 T 14-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_09325 921ecb4bfa8340429d125ecddbb30f00 230 Pfam PF01048 Phosphorylase superfamily 2 227 7.5E-47 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RY45_09325 921ecb4bfa8340429d125ecddbb30f00 230 Gene3D G3DSA:3.40.50.1580 1 230 3.2E-67 T 14-10-2018 RY45_09325 921ecb4bfa8340429d125ecddbb30f00 230 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 229 1.5E-92 T 14-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RY45_09325 921ecb4bfa8340429d125ecddbb30f00 230 SUPERFAMILY SSF53167 1 228 3.27E-68 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RY45_07580 2652986ebc1fe3548e3b82058834a9d0 443 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 12 438 1.8E-219 T 14-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 RY45_07580 2652986ebc1fe3548e3b82058834a9d0 443 Gene3D G3DSA:3.40.50.1100 24 438 1.9E-191 T 14-10-2018 RY45_07580 2652986ebc1fe3548e3b82058834a9d0 443 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 443 269.93 T 14-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 RY45_07580 2652986ebc1fe3548e3b82058834a9d0 443 SUPERFAMILY SSF53686 93 438 9.47E-52 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_07580 2652986ebc1fe3548e3b82058834a9d0 443 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 75 401 6.0E-61 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_07580 2652986ebc1fe3548e3b82058834a9d0 443 Gene3D G3DSA:3.40.50.1100 116 238 1.9E-191 T 14-10-2018 RY45_07580 2652986ebc1fe3548e3b82058834a9d0 443 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 108 122 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RY45_06120 bfcfb6c3aea6ad9afb75d397547defe2 210 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 207 2.0E-102 T 14-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 RY45_06120 bfcfb6c3aea6ad9afb75d397547defe2 210 Pfam PF02508 Rnf-Nqr subunit, membrane protein 8 195 8.0E-62 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_06120 bfcfb6c3aea6ad9afb75d397547defe2 210 PIRSF PIRSF006102 3 210 1.0E-66 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 RY45_06120 bfcfb6c3aea6ad9afb75d397547defe2 210 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 35.937 T 14-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 RY45_05825 61afe55442036035adb7a72c770d46bf 206 PIRSF PIRSF028688 1 199 3.4E-44 T 14-10-2018 IPR014549 Flagellar protein FlgO RY45_17380 8ba0331fa1b7195b9565cf57dedcf97e 268 Gene3D G3DSA:3.40.50.620 17 231 2.3E-61 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_17380 8ba0331fa1b7195b9565cf57dedcf97e 268 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 50 258 1.7E-80 T 14-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RY45_17380 8ba0331fa1b7195b9565cf57dedcf97e 268 SUPERFAMILY SSF52402 39 223 9.9E-53 T 14-10-2018 RY45_17380 8ba0331fa1b7195b9565cf57dedcf97e 268 PIRSF PIRSF000857 5 263 3.5E-52 T 14-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RY45_17380 8ba0331fa1b7195b9565cf57dedcf97e 268 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 24 258 39.214 T 14-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RY45_17380 8ba0331fa1b7195b9565cf57dedcf97e 268 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 63 234 1.7E-45 T 14-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RY45_17380 8ba0331fa1b7195b9565cf57dedcf97e 268 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 36 257 3.8E-84 T 14-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 RY45_02430 160afce7111b36322c9f99a99e561220 281 Pfam PF04228 Putative neutral zinc metallopeptidase 1 278 8.5E-131 T 14-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RY45_06565 1dbee5f415b9102af1b0ade1e607ee19 370 SUPERFAMILY SSF64383 233 367 1.7E-45 T 14-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 RY45_06565 1dbee5f415b9102af1b0ade1e607ee19 370 Gene3D G3DSA:3.30.1400.10 231 369 2.3E-48 T 14-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 RY45_06565 1dbee5f415b9102af1b0ade1e607ee19 370 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 235 360 1.7E-47 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 RY45_06565 1dbee5f415b9102af1b0ade1e607ee19 370 Hamap MF_00509 Cell division protein ZipA [zipA]. 2 364 22.319 T 14-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 RY45_06565 1dbee5f415b9102af1b0ade1e607ee19 370 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 3 362 4.7E-60 T 14-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 RY45_06565 1dbee5f415b9102af1b0ade1e607ee19 370 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 235 358 9.0E-19 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 RY45_06565 1dbee5f415b9102af1b0ade1e607ee19 370 SMART SM00771 232 362 6.3E-53 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 RY45_10790 4f7abcb3450d4293abec239fcab97dab 251 Pfam PF04250 Protein of unknown function (DUF429) 14 229 3.3E-11 T 14-10-2018 IPR007362 Protein of unknown function DUF429 RY45_05330 cbd7d04d5fa1dce8f93e2ba2d3106154 343 SUPERFAMILY SSF81345 4 338 2.22E-80 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_05330 cbd7d04d5fa1dce8f93e2ba2d3106154 343 Gene3D G3DSA:1.10.3470.10 5 343 8.1E-102 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_05330 cbd7d04d5fa1dce8f93e2ba2d3106154 343 Pfam PF01032 FecCD transport family 17 338 7.3E-90 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RY45_16635 da842171ba02ff983f240261a4799b47 402 PIRSF PIRSF015557 6 402 1.1E-146 T 14-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 RY45_16635 da842171ba02ff983f240261a4799b47 402 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 10 398 1.3E-143 T 14-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 RY45_16635 da842171ba02ff983f240261a4799b47 402 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 10 398 3.1E-149 T 14-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 RY45_10240 14ef7ff1f42306863072679752f032d8 288 SUPERFAMILY SSF51182 2 287 3.26E-85 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_10240 14ef7ff1f42306863072679752f032d8 288 Pfam PF02678 Pirin 21 127 1.9E-34 T 14-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 RY45_10240 14ef7ff1f42306863072679752f032d8 288 Pfam PF05726 Pirin C-terminal cupin domain 183 284 6.5E-29 T 14-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 RY45_10240 14ef7ff1f42306863072679752f032d8 288 Gene3D G3DSA:2.60.120.10 149 253 9.5E-85 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_10240 14ef7ff1f42306863072679752f032d8 288 Gene3D G3DSA:2.60.120.10 17 279 9.5E-85 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_10240 14ef7ff1f42306863072679752f032d8 288 PIRSF PIRSF006232 3 288 2.6E-90 T 14-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 RY45_02860 d113f7e97f4198ed9049f1127ed86f8a 103 SUPERFAMILY SSF46689 4 96 4.48E-19 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_02860 d113f7e97f4198ed9049f1127ed86f8a 103 Gene3D G3DSA:1.10.10.60 8 91 7.2E-12 T 14-10-2018 RY45_02860 d113f7e97f4198ed9049f1127ed86f8a 103 Pfam PF01527 Transposase 1 77 1.6E-16 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RY45_15790 d09f178e8a93b754995cb177027fe37d 113 Pfam PF16998 17 kDa outer membrane surface antigen 29 108 2.7E-8 T 14-10-2018 IPR032635 Surface antigen domain RY45_12360 1aa5189878ecd841e1c72b4081229f49 161 SUPERFAMILY SSF56524 40 159 4.32E-17 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RY45_12360 1aa5189878ecd841e1c72b4081229f49 161 Pfam PF00174 Oxidoreductase molybdopterin binding domain 57 135 1.5E-5 T 14-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 RY45_00950 df6befd3e70ba7738ec460600401a407 35 SUPERFAMILY SSF55298 8 35 4.38E-5 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_00950 df6befd3e70ba7738ec460600401a407 35 Gene3D G3DSA:3.30.1330.40 4 35 1.5E-6 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RY45_04170 9b8d80d62db38ac60d479bc1a07711a6 253 Pfam PF00753 Metallo-beta-lactamase superfamily 48 230 1.4E-15 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_04170 9b8d80d62db38ac60d479bc1a07711a6 253 SMART SM00849 48 230 2.9E-19 T 14-10-2018 IPR001279 Metallo-beta-lactamase RY45_04170 9b8d80d62db38ac60d479bc1a07711a6 253 ProSitePatterns PS00743 Beta-lactamases class B signature 1. 91 110 - T 14-10-2018 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 RY45_04170 9b8d80d62db38ac60d479bc1a07711a6 253 SUPERFAMILY SSF56281 28 252 6.86E-47 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_04170 9b8d80d62db38ac60d479bc1a07711a6 253 Gene3D G3DSA:3.60.15.10 27 253 3.3E-64 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RY45_04170 9b8d80d62db38ac60d479bc1a07711a6 253 ProSitePatterns PS00744 Beta-lactamases class B signature 2. 183 195 - T 14-10-2018 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 RY45_20545 b0f7324b5550d941ba3d8e4ea6292b53 266 SUPERFAMILY SSF52540 9 238 1.7E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_20545 b0f7324b5550d941ba3d8e4ea6292b53 266 Pfam PF00005 ABC transporter 26 173 3.2E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_20545 b0f7324b5550d941ba3d8e4ea6292b53 266 Gene3D G3DSA:3.40.50.300 7 252 5.9E-64 T 14-10-2018 RY45_20545 b0f7324b5550d941ba3d8e4ea6292b53 266 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_20545 b0f7324b5550d941ba3d8e4ea6292b53 266 SMART SM00382 34 207 2.8E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_13800 17d3ed6d7ade766f01621e786cd280d2 386 Pfam PF04209 homogentisate 1,2-dioxygenase 106 362 1.3E-16 T 14-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 RY45_13800 17d3ed6d7ade766f01621e786cd280d2 386 Gene3D G3DSA:2.60.120.10 66 167 4.9E-12 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_13800 17d3ed6d7ade766f01621e786cd280d2 386 SUPERFAMILY SSF51182 56 375 1.11E-84 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_21585 993df1a9d5d4d15927ac54d7ad659777 128 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 83 117 3.6E-13 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RY45_21585 993df1a9d5d4d15927ac54d7ad659777 128 SUPERFAMILY SSF57716 85 122 3.21E-10 T 14-10-2018 RY45_21585 993df1a9d5d4d15927ac54d7ad659777 128 SUPERFAMILY SSF109635 3 84 2.62E-15 T 14-10-2018 IPR037187 DksA, N-terminal domain superfamily RY45_21585 993df1a9d5d4d15927ac54d7ad659777 128 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 88 112 - T 14-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RY45_21585 993df1a9d5d4d15927ac54d7ad659777 128 Gene3D G3DSA:1.20.120.910 2 125 1.3E-29 T 14-10-2018 RY45_10320 51f6deb4662157f4b122360e46a724a3 114 PIRSF PIRSF000169 1 114 9.8E-39 T 14-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 RY45_10320 51f6deb4662157f4b122360e46a724a3 114 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 11 103 3.2E-7 T 14-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10320 51f6deb4662157f4b122360e46a724a3 114 SUPERFAMILY SSF81343 5 114 1.96E-27 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_10320 51f6deb4662157f4b122360e46a724a3 114 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 112 9.7E-34 T 14-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 RY45_10320 51f6deb4662157f4b122360e46a724a3 114 Gene3D G3DSA:1.20.1300.10 1 114 8.8E-29 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RY45_17630 2f70711f90aeb4e02e53a38369cae7ae 422 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 7 421 1.8E-134 T 14-10-2018 IPR010520 UPF0255 family RY45_17630 2f70711f90aeb4e02e53a38369cae7ae 422 Gene3D G3DSA:3.40.50.1820 18 422 1.8E-107 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_17630 2f70711f90aeb4e02e53a38369cae7ae 422 SUPERFAMILY SSF53474 51 420 4.83E-49 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_16150 ffd977e7babba6efc8e6614bc0e3e18b 501 SUPERFAMILY SSF103473 10 481 1.29E-24 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_16150 ffd977e7babba6efc8e6614bc0e3e18b 501 Hamap MF_01879 Dipeptide and tripeptide permease B [dtpB]. 3 486 44.779 T 14-10-2018 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B RY45_16150 ffd977e7babba6efc8e6614bc0e3e18b 501 Pfam PF00854 POT family 82 442 3.9E-86 T 14-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 RY45_16150 ffd977e7babba6efc8e6614bc0e3e18b 501 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 145 157 - T 14-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 RY45_16150 ffd977e7babba6efc8e6614bc0e3e18b 501 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 9 483 1.2E-221 T 14-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 RY45_16150 ffd977e7babba6efc8e6614bc0e3e18b 501 Gene3D G3DSA:1.20.1250.20 6 483 4.8E-108 T 14-10-2018 RY45_00880 e28094e2d7a2f94829e86c7fb8d3e424 113 Pfam PF09313 Domain of unknown function (DUF1971) 14 94 4.2E-24 T 14-10-2018 IPR015392 Domain of unknown function DUF1971 RY45_00880 e28094e2d7a2f94829e86c7fb8d3e424 113 PIRSF PIRSF020632 3 112 8.9E-53 T 14-10-2018 IPR014510 Tellurite resistance predicted, YeaR RY45_00880 e28094e2d7a2f94829e86c7fb8d3e424 113 SUPERFAMILY SSF51197 3 100 5.49E-30 T 14-10-2018 RY45_00880 e28094e2d7a2f94829e86c7fb8d3e424 113 Gene3D G3DSA:2.60.120.10 2 113 2.5E-42 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_13990 80ce1e7f52bfedc912b227d3c9f78fbe 292 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 40 280 4.8E-52 T 14-10-2018 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 RY45_13990 80ce1e7f52bfedc912b227d3c9f78fbe 292 SUPERFAMILY SSF140591 73 268 7.45E-59 T 14-10-2018 RY45_13990 80ce1e7f52bfedc912b227d3c9f78fbe 292 Pfam PF07201 HrpJ-like domain 59 222 5.1E-39 T 14-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 Gene3D G3DSA:3.30.930.10 109 464 5.1E-109 T 14-10-2018 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 2.9E-80 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 4 466 45.938 T 14-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 4 466 7.2E-205 T 14-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 SUPERFAMILY SSF50249 15 101 1.35E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 4.1E-14 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 4.1E-14 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 4.1E-14 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 4.1E-14 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 Gene3D G3DSA:2.40.50.140 1 105 1.0E-17 T 14-10-2018 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 Pfam PF01336 OB-fold nucleic acid binding domain 21 99 5.4E-9 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RY45_08095 dc5b36ca214e58687cab126e4f4c3bd4 466 SUPERFAMILY SSF55681 97 463 2.28E-97 T 14-10-2018 RY45_08245 257862c4e9ef5ec9d5bc2a65429009d5 321 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 7 317 5.9E-143 T 14-10-2018 IPR011758 Alpha-L-glutamate ligase-related protein RY45_08245 257862c4e9ef5ec9d5bc2a65429009d5 321 SUPERFAMILY SSF56059 43 282 3.23E-16 T 14-10-2018 RY45_08245 257862c4e9ef5ec9d5bc2a65429009d5 321 Pfam PF14397 Sugar-transfer associated ATP-grasp 24 297 4.2E-110 T 14-10-2018 IPR039523 Alpha-L-glutamate ligase-related protein, ATP-grasp domain KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RY45_15870 c533653dc528be77d2d2f33a67c353ef 233 SUPERFAMILY SSF161098 8 222 2.88E-29 T 14-10-2018 IPR035906 MetI-like superfamily RY45_15870 c533653dc528be77d2d2f33a67c353ef 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 223 8.9E-9 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_15870 c533653dc528be77d2d2f33a67c353ef 233 Gene3D G3DSA:1.10.3720.10 2 231 3.4E-25 T 14-10-2018 IPR035906 MetI-like superfamily RY45_01095 bc62629d2f56b79d9aba221a5789ba92 400 SUPERFAMILY SSF52507 3 179 1.06E-62 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RY45_01095 bc62629d2f56b79d9aba221a5789ba92 400 SUPERFAMILY SSF102645 185 399 6.15E-79 T 14-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RY45_01095 bc62629d2f56b79d9aba221a5789ba92 400 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 370 2.5E-75 T 14-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RY45_01095 bc62629d2f56b79d9aba221a5789ba92 400 Pfam PF02441 Flavoprotein 6 179 3.8E-46 T 14-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RY45_01095 bc62629d2f56b79d9aba221a5789ba92 400 Gene3D G3DSA:3.40.50.10300 185 400 1.1E-80 T 14-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RY45_01095 bc62629d2f56b79d9aba221a5789ba92 400 Gene3D G3DSA:3.40.50.1950 1 184 1.4E-57 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RY45_01095 bc62629d2f56b79d9aba221a5789ba92 400 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 394 2.5E-150 T 14-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 RY45_06245 3573d219e488897bbfdd4c958c216e68 111 Pfam PF04287 tRNA pseudouridine synthase C 8 102 3.5E-32 T 14-10-2018 IPR023376 YqcC-like domain RY45_06245 3573d219e488897bbfdd4c958c216e68 111 Gene3D G3DSA:1.20.1440.40 1 105 3.4E-31 T 14-10-2018 IPR036814 YqcC-like superfamily RY45_06245 3573d219e488897bbfdd4c958c216e68 111 SUPERFAMILY SSF158452 1 106 1.01E-33 T 14-10-2018 IPR036814 YqcC-like superfamily RY45_06245 3573d219e488897bbfdd4c958c216e68 111 PIRSF PIRSF006257 1 108 9.3E-32 T 14-10-2018 IPR007384 Protein of unknown function UCP006257 RY45_20515 76db24eead85c9008f36183451285dd8 479 Gene3D G3DSA:1.10.10.1330 116 236 7.7E-24 T 14-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily RY45_20515 76db24eead85c9008f36183451285dd8 479 PRINTS PR00045 Sigma-54 factor signature 394 405 9.8E-31 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 PRINTS PR00045 Sigma-54 factor signature 378 390 9.8E-31 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 PRINTS PR00045 Sigma-54 factor signature 188 205 9.8E-31 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 PRINTS PR00045 Sigma-54 factor signature 452 470 9.8E-31 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 366 385 - T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 PIRSF PIRSF000774 1 479 1.3E-155 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 7.5E-16 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 476 2.2E-158 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 457 464 - T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RY45_20515 76db24eead85c9008f36183451285dd8 479 Gene3D G3DSA:1.10.10.60 419 476 1.8E-23 T 14-10-2018 RY45_20515 76db24eead85c9008f36183451285dd8 479 Pfam PF04552 Sigma-54, DNA binding domain 319 477 2.5E-71 T 14-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding RY45_20515 76db24eead85c9008f36183451285dd8 479 Pfam PF04963 Sigma-54 factor, core binding domain 114 305 1.0E-60 T 14-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 RY45_00460 99b5e23364de4aa1b3ec0fb492e04634 67 Pfam PF05489 Phage Tail Protein X 1 57 5.9E-24 T 14-10-2018 IPR008861 Phage Tail Protein X-like RY45_00460 99b5e23364de4aa1b3ec0fb492e04634 67 Gene3D G3DSA:3.10.350.10 1 67 7.0E-28 T 14-10-2018 IPR036779 LysM domain superfamily RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 SUPERFAMILY SSF53822 61 314 1.65E-41 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 Gene3D G3DSA:1.10.260.40 2 62 1.9E-24 T 14-10-2018 RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 SUPERFAMILY SSF47413 3 59 1.02E-13 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-10-2018 RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 SMART SM00354 1 74 4.3E-29 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 Gene3D G3DSA:3.40.50.2300 63 153 2.9E-20 T 14-10-2018 RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 Gene3D G3DSA:3.40.50.2300 156 328 6.0E-27 T 14-10-2018 RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 51 3.6E-16 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 3 327 2.7E-122 T 14-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 RY45_11120 a2e5102d10f9f38400ed5d20873760a0 328 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 218 1.4E-12 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 Pfam PF00270 DEAD/DEAH box helicase 216 362 5.1E-12 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 Gene3D G3DSA:1.10.8.630 2 110 2.1E-33 T 14-10-2018 RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 SMART SM00487 193 389 5.2E-17 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 SUPERFAMILY SSF52540 216 598 1.46E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 Gene3D G3DSA:3.40.50.300 187 374 2.3E-75 T 14-10-2018 RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 Pfam PF00271 Helicase conserved C-terminal domain 519 586 4.8E-6 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 728 24.555 T 14-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 SMART SM00490 490 587 1.4E-9 T 14-10-2018 IPR001650 Helicase, C-terminal RY45_21790 ef88f5863c65e3280a87677f90b3ec77 729 TIGRFAM TIGR00595 priA: primosomal protein N' 219 725 4.6E-181 T 14-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RY45_08255 b211bdfae626b032a15adeb7daf0eeb2 262 Pfam PF05618 Putative ATP-dependant zinc protease 122 256 5.1E-42 T 14-10-2018 RY45_08255 b211bdfae626b032a15adeb7daf0eeb2 262 SUPERFAMILY SSF50630 122 253 4.56E-41 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily RY45_08255 b211bdfae626b032a15adeb7daf0eeb2 262 Gene3D G3DSA:2.40.70.10 118 246 1.7E-41 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily RY45_14340 f4f7882802ed78bf32861a68d933bdbb 444 Pfam PF03553 Na+/H+ antiporter family 49 217 2.8E-15 T 14-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 RY45_22055 2b7ac49f295e50c5b456ece8c1445a6f 220 SUPERFAMILY SSF74653 136 202 5.62E-23 T 14-10-2018 RY45_22055 2b7ac49f295e50c5b456ece8c1445a6f 220 Gene3D G3DSA:3.30.2420.10 135 220 4.7E-27 T 14-10-2018 RY45_22055 2b7ac49f295e50c5b456ece8c1445a6f 220 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 143 217 1.2E-21 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 RY45_22055 2b7ac49f295e50c5b456ece8c1445a6f 220 PRINTS PR01374 Gram-negative bacterial tonB protein signature 62 72 1.2E-18 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RY45_22055 2b7ac49f295e50c5b456ece8c1445a6f 220 PRINTS PR01374 Gram-negative bacterial tonB protein signature 178 195 1.2E-18 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RY45_22055 2b7ac49f295e50c5b456ece8c1445a6f 220 PRINTS PR01374 Gram-negative bacterial tonB protein signature 159 177 1.2E-18 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RY45_22055 2b7ac49f295e50c5b456ece8c1445a6f 220 PRINTS PR01374 Gram-negative bacterial tonB protein signature 138 159 1.2E-18 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RY45_22055 2b7ac49f295e50c5b456ece8c1445a6f 220 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 144 218 1.8E-21 T 14-10-2018 IPR006260 TonB/TolA, C-terminal RY45_20130 7629c060be31cb2566188d5257408937 451 Gene3D G3DSA:3.40.1190.10 81 309 9.8E-77 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_20130 7629c060be31cb2566188d5257408937 451 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 443 34.662 T 14-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_20130 7629c060be31cb2566188d5257408937 451 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 441 1.3E-139 T 14-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RY45_20130 7629c060be31cb2566188d5257408937 451 Gene3D G3DSA:3.90.190.20 310 448 8.3E-40 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_20130 7629c060be31cb2566188d5257408937 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 396 2.3E-13 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RY45_20130 7629c060be31cb2566188d5257408937 451 Pfam PF01225 Mur ligase family, catalytic domain 24 71 2.4E-10 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RY45_20130 7629c060be31cb2566188d5257408937 451 Pfam PF08245 Mur ligase middle domain 105 289 3.4E-48 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RY45_20130 7629c060be31cb2566188d5257408937 451 SUPERFAMILY SSF53623 99 308 1.15E-53 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RY45_20130 7629c060be31cb2566188d5257408937 451 Gene3D G3DSA:3.40.1390.10 1 80 1.2E-28 T 14-10-2018 RY45_20130 7629c060be31cb2566188d5257408937 451 SUPERFAMILY SSF53244 311 441 9.16E-34 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RY45_20130 7629c060be31cb2566188d5257408937 451 SUPERFAMILY SSF63418 1 96 1.44E-25 T 14-10-2018 IPR035911 MurE/MurF, N-terminal RY45_15550 52cddb2bb8ba3742f2b94c72ae774ec9 166 Pfam PF11008 Protein of unknown function (DUF2846) 17 127 5.1E-9 T 14-10-2018 IPR022548 Domain of unknown function DUF2846 RY45_15005 c0aebebcd8e80edba8f91bfdb80a09c1 361 Gene3D G3DSA:3.90.25.10 209 338 6.7E-135 T 14-10-2018 RY45_15005 c0aebebcd8e80edba8f91bfdb80a09c1 361 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 344 3.4E-154 T 14-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 RY45_15005 c0aebebcd8e80edba8f91bfdb80a09c1 361 SUPERFAMILY SSF51735 2 356 1.62E-92 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_15005 c0aebebcd8e80edba8f91bfdb80a09c1 361 Gene3D G3DSA:3.40.50.720 2 329 6.7E-135 T 14-10-2018 RY45_15005 c0aebebcd8e80edba8f91bfdb80a09c1 361 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 330 1.9E-95 T 14-10-2018 IPR016040 NAD(P)-binding domain RY45_16535 b3ed53a2cd2e05b4508b19cc20a0f257 239 SUPERFAMILY SSF51695 1 225 1.23E-60 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RY45_16535 b3ed53a2cd2e05b4508b19cc20a0f257 239 Gene3D G3DSA:3.20.20.190 1 227 4.9E-65 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RY45_16535 b3ed53a2cd2e05b4508b19cc20a0f257 239 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 222 3.7E-33 T 14-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RY45_10750 55d3ad016b6af8e8df1182539cd5c290 578 Pfam PF00005 ABC transporter 351 499 1.1E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_10750 55d3ad016b6af8e8df1182539cd5c290 578 SUPERFAMILY SSF52540 332 568 4.85E-79 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10750 55d3ad016b6af8e8df1182539cd5c290 578 Pfam PF00664 ABC transporter transmembrane region 19 291 6.5E-37 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RY45_10750 55d3ad016b6af8e8df1182539cd5c290 578 Gene3D G3DSA:1.20.1560.10 1 324 4.0E-72 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_10750 55d3ad016b6af8e8df1182539cd5c290 578 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_10750 55d3ad016b6af8e8df1182539cd5c290 578 SMART SM00382 360 544 5.9E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_10750 55d3ad016b6af8e8df1182539cd5c290 578 SUPERFAMILY SSF90123 6 317 2.22E-70 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RY45_10750 55d3ad016b6af8e8df1182539cd5c290 578 Gene3D G3DSA:3.40.50.300 331 577 6.6E-82 T 14-10-2018 RY45_09080 7303fc8e4c24f0fdebb6c594d4858cb5 160 Gene3D G3DSA:2.60.40.550 22 103 6.6E-27 T 14-10-2018 RY45_09080 7303fc8e4c24f0fdebb6c594d4858cb5 160 SUPERFAMILY SSF49772 27 157 1.57E-50 T 14-10-2018 IPR036198 Ecotin superfamily RY45_09080 7303fc8e4c24f0fdebb6c594d4858cb5 160 PIRSF PIRSF006865 12 160 1.8E-48 T 14-10-2018 IPR005658 Proteinase inhibitor I11, ecotin RY45_09080 7303fc8e4c24f0fdebb6c594d4858cb5 160 Gene3D G3DSA:4.10.1230.10 104 160 2.0E-22 T 14-10-2018 IPR027438 Ecotin, C-terminal RY45_09080 7303fc8e4c24f0fdebb6c594d4858cb5 160 Pfam PF03974 Ecotin 29 150 2.4E-47 T 14-10-2018 IPR005658 Proteinase inhibitor I11, ecotin RY45_21745 f1f175f78f493a178df393574e17b38d 177 Gene3D G3DSA:1.20.1200.10 27 176 6.3E-18 T 14-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_21745 f1f175f78f493a178df393574e17b38d 177 Pfam PF01923 Cobalamin adenosyltransferase 30 160 1.1E-11 T 14-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_21745 f1f175f78f493a178df393574e17b38d 177 SUPERFAMILY SSF89028 10 173 2.16E-30 T 14-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_21745 f1f175f78f493a178df393574e17b38d 177 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 30 145 1.0E-15 T 14-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RY45_21380 28a734e79c927b85aa7977e8ed6c9020 328 Gene3D G3DSA:3.40.50.2300 132 277 2.7E-115 T 14-10-2018 RY45_21380 28a734e79c927b85aa7977e8ed6c9020 328 SUPERFAMILY SSF53822 24 327 2.16E-82 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_21380 28a734e79c927b85aa7977e8ed6c9020 328 Gene3D G3DSA:3.40.50.2300 26 298 2.7E-115 T 14-10-2018 RY45_21380 28a734e79c927b85aa7977e8ed6c9020 328 Pfam PF13407 Periplasmic binding protein domain 26 297 2.9E-62 T 14-10-2018 IPR025997 Periplasmic binding protein RY45_20535 6ebd1b87af197643348ddf7f17ca9e0a 184 PIRSF PIRSF006118 9 183 3.2E-66 T 14-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_20535 6ebd1b87af197643348ddf7f17ca9e0a 184 SUPERFAMILY SSF56784 18 175 3.28E-41 T 14-10-2018 IPR036412 HAD-like superfamily RY45_20535 6ebd1b87af197643348ddf7f17ca9e0a 184 Pfam PF08282 haloacid dehalogenase-like hydrolase 98 154 5.5E-8 T 14-10-2018 RY45_20535 6ebd1b87af197643348ddf7f17ca9e0a 184 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 22 174 3.6E-56 T 14-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_20535 6ebd1b87af197643348ddf7f17ca9e0a 184 Gene3D G3DSA:3.40.50.1000 2 179 5.6E-55 T 14-10-2018 IPR023214 HAD superfamily RY45_01155 4dcf855146512eb483e5111504e583cb 95 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 85 3.7E-12 T 14-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RY45_01155 4dcf855146512eb483e5111504e583cb 95 SUPERFAMILY SSF52794 1 86 5.75E-19 T 14-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RY45_01155 4dcf855146512eb483e5111504e583cb 95 Gene3D G3DSA:3.40.50.2300 1 90 4.9E-19 T 14-10-2018 RY45_20420 c6d2cccf4fed308e0cbabc71124c4415 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 2.5E-46 T 14-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RY45_20420 c6d2cccf4fed308e0cbabc71124c4415 130 Gene3D G3DSA:3.30.230.10 1 130 8.5E-54 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RY45_20420 c6d2cccf4fed308e0cbabc71124c4415 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 14-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RY45_20420 c6d2cccf4fed308e0cbabc71124c4415 130 SUPERFAMILY SSF54211 5 130 1.4E-48 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RY45_20420 c6d2cccf4fed308e0cbabc71124c4415 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.25 T 14-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid RY45_18790 c581be8642e81c6a8673ab341b035ed9 236 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 110 116 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RY45_18790 c581be8642e81c6a8673ab341b035ed9 236 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 107 119 1.0E-4 T 14-10-2018 RY45_18790 c581be8642e81c6a8673ab341b035ed9 236 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 137 161 1.0E-4 T 14-10-2018 RY45_18790 c581be8642e81c6a8673ab341b035ed9 236 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 42 56 1.0E-4 T 14-10-2018 RY45_18790 c581be8642e81c6a8673ab341b035ed9 236 Pfam PF05175 Methyltransferase small domain 37 131 1.7E-14 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RY45_18790 c581be8642e81c6a8673ab341b035ed9 236 SUPERFAMILY SSF53335 8 199 6.78E-32 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_18790 c581be8642e81c6a8673ab341b035ed9 236 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 5 236 56.787 T 14-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 RY45_18790 c581be8642e81c6a8673ab341b035ed9 236 Gene3D G3DSA:3.40.50.150 3 231 1.3E-61 T 14-10-2018 RY45_01755 d26947cd1e5e94deb9c848169935b827 448 SUPERFAMILY SSF51261 259 445 1.1E-44 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_01755 d26947cd1e5e94deb9c848169935b827 448 Gene3D G3DSA:2.70.70.10 316 446 4.2E-36 T 14-10-2018 IPR011055 Duplicated hybrid motif RY45_01755 d26947cd1e5e94deb9c848169935b827 448 Pfam PF01551 Peptidase family M23 348 441 5.2E-26 T 14-10-2018 IPR016047 Peptidase M23 RY45_10935 c6f61af60fffea2ed78671e8170075ee 498 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 174 478 9.8E-100 T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RY45_10935 c6f61af60fffea2ed78671e8170075ee 498 SUPERFAMILY SSF53187 169 484 1.76E-95 T 14-10-2018 RY45_10935 c6f61af60fffea2ed78671e8170075ee 498 Gene3D G3DSA:3.40.630.10 159 486 1.6E-108 T 14-10-2018 RY45_10935 c6f61af60fffea2ed78671e8170075ee 498 PRINTS PR00481 Cytosol aminopeptidase signature 272 293 7.4E-42 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_10935 c6f61af60fffea2ed78671e8170075ee 498 PRINTS PR00481 Cytosol aminopeptidase signature 309 330 7.4E-42 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_10935 c6f61af60fffea2ed78671e8170075ee 498 PRINTS PR00481 Cytosol aminopeptidase signature 331 351 7.4E-42 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_10935 c6f61af60fffea2ed78671e8170075ee 498 PRINTS PR00481 Cytosol aminopeptidase signature 359 374 7.4E-42 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_10935 c6f61af60fffea2ed78671e8170075ee 498 PRINTS PR00481 Cytosol aminopeptidase signature 250 267 7.4E-42 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RY45_20200 0b7b4cd7d485e962516a8825b0705568 130 PIRSF PIRSF039090 2 130 2.2E-43 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RY45_20200 0b7b4cd7d485e962516a8825b0705568 130 SUPERFAMILY SSF101116 10 127 2.22E-36 T 14-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 RY45_20200 0b7b4cd7d485e962516a8825b0705568 130 Pfam PF02561 Flagellar protein FliS 10 125 5.6E-36 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RY45_20200 0b7b4cd7d485e962516a8825b0705568 130 TIGRFAM TIGR00208 fliS: flagellar protein FliS 5 125 5.5E-25 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RY45_20200 0b7b4cd7d485e962516a8825b0705568 130 Gene3D G3DSA:1.20.120.340 2 128 2.8E-40 T 14-10-2018 RY45_19335 881496d25b07ad75e95e84548a9f2bed 245 Gene3D G3DSA:3.40.190.10 107 201 1.4E-7 T 14-10-2018 RY45_19335 881496d25b07ad75e95e84548a9f2bed 245 SUPERFAMILY SSF53850 11 244 6.19E-19 T 14-10-2018 RY45_19335 881496d25b07ad75e95e84548a9f2bed 245 Gene3D G3DSA:3.40.190.10 34 241 1.4E-7 T 14-10-2018 RY45_00380 dea61e2130209ecacef34804ba1979cd 172 Pfam PF04985 Phage tail tube protein FII 4 171 7.7E-57 T 14-10-2018 IPR006498 Tail tube protein RY45_00380 dea61e2130209ecacef34804ba1979cd 172 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 172 3.5E-47 T 14-10-2018 IPR006498 Tail tube protein RY45_05040 edde259d648cf7941d7ab7130834b717 403 SMART SM00448 8 125 1.6E-14 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05040 edde259d648cf7941d7ab7130834b717 403 Pfam PF00563 EAL domain 147 380 7.6E-67 T 14-10-2018 IPR001633 EAL domain RY45_05040 edde259d648cf7941d7ab7130834b717 403 Gene3D G3DSA:3.20.20.450 144 390 2.2E-83 T 14-10-2018 IPR035919 EAL domain superfamily RY45_05040 edde259d648cf7941d7ab7130834b717 403 SMART SM00052 141 385 6.4E-92 T 14-10-2018 IPR001633 EAL domain RY45_05040 edde259d648cf7941d7ab7130834b717 403 SUPERFAMILY SSF52172 8 137 6.97E-23 T 14-10-2018 IPR011006 CheY-like superfamily RY45_05040 edde259d648cf7941d7ab7130834b717 403 Pfam PF00072 Response regulator receiver domain 10 123 2.5E-17 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05040 edde259d648cf7941d7ab7130834b717 403 SUPERFAMILY SSF141868 146 393 1.44E-80 T 14-10-2018 IPR035919 EAL domain superfamily RY45_05040 edde259d648cf7941d7ab7130834b717 403 Gene3D G3DSA:3.40.50.2300 6 139 1.5E-23 T 14-10-2018 RY45_13155 5977b04e7037288f42a17270d0cf4037 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 333 509 2.1E-38 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13155 5977b04e7037288f42a17270d0cf4037 543 SUPERFAMILY SSF58104 237 543 6.28E-63 T 14-10-2018 RY45_13155 5977b04e7037288f42a17270d0cf4037 543 SMART SM00283 281 542 2.6E-59 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13155 5977b04e7037288f42a17270d0cf4037 543 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 185 3.2E-36 T 14-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RY45_13155 5977b04e7037288f42a17270d0cf4037 543 Gene3D G3DSA:1.10.287.950 214 543 4.6E-67 T 14-10-2018 RY45_13155 5977b04e7037288f42a17270d0cf4037 543 SMART SM00304 214 266 9.9E-4 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_13835 99f0a82cd41c6ab54e04c49f7553e7a3 849 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 534 821 4.8E-94 T 14-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal RY45_13835 99f0a82cd41c6ab54e04c49f7553e7a3 849 SUPERFAMILY SSF55729 641 819 5.56E-13 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_13835 99f0a82cd41c6ab54e04c49f7553e7a3 849 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 17 292 1.8E-13 T 14-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RY45_12465 3181e2802f1bbc4d1c5c71e64a4740c5 367 SUPERFAMILY SSF52096 15 342 4.83E-65 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_12465 3181e2802f1bbc4d1c5c71e64a4740c5 367 Pfam PF16113 Enoyl-CoA hydratase/isomerase 18 343 9.3E-111 T 14-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 RY45_12465 3181e2802f1bbc4d1c5c71e64a4740c5 367 Gene3D G3DSA:3.90.226.10 4 365 1.1E-117 T 14-10-2018 RY45_16925 38114e08d704ec1358586be47a12a56e 291 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 38 272 2.9E-47 T 14-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 RY45_16925 38114e08d704ec1358586be47a12a56e 291 SUPERFAMILY SSF51197 19 274 7.33E-61 T 14-10-2018 RY45_16925 38114e08d704ec1358586be47a12a56e 291 Gene3D G3DSA:3.60.130.10 2 287 1.8E-98 T 14-10-2018 RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 SUPERFAMILY SSF46785 5 112 7.71E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.4E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 Pfam PF03466 LysR substrate binding domain 89 293 4.7E-40 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 SUPERFAMILY SSF53850 90 293 1.66E-39 T 14-10-2018 RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 Gene3D G3DSA:1.10.10.10 1 86 6.8E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 Gene3D G3DSA:3.40.190.10 167 267 4.5E-84 T 14-10-2018 RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 Gene3D G3DSA:3.40.190.10 92 301 4.5E-84 T 14-10-2018 RY45_03485 0a6fe28ccb0c5fffa4ed394bcec33071 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 2.0E-13 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_07255 7c05a2c0a2579c261c3ec18956a2ad4d 263 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 254 1.7E-68 T 14-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 RY45_07255 7c05a2c0a2579c261c3ec18956a2ad4d 263 Pfam PF01311 Bacterial export proteins, family 1 13 246 2.1E-62 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_07255 7c05a2c0a2579c261c3ec18956a2ad4d 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 1.5E-20 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_07255 7c05a2c0a2579c261c3ec18956a2ad4d 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 1.5E-20 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_07255 7c05a2c0a2579c261c3ec18956a2ad4d 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 1.5E-20 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_07255 7c05a2c0a2579c261c3ec18956a2ad4d 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 1.5E-20 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RY45_17815 820beb018e57abc7623311032bd63725 83 Pfam PF11173 Protein of unknown function (DUF2960) 1 80 4.3E-35 T 14-10-2018 IPR021343 Protein of unknown function DUF2960 RY45_18795 f2b9c5e696cab3023c55ee070fa7b906 435 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 413 1.6E-128 T 14-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RY45_18795 f2b9c5e696cab3023c55ee070fa7b906 435 Pfam PF05525 Branched-chain amino acid transport protein 8 424 2.8E-139 T 14-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RY45_03420 ed673da59e604e41da85c1028185118d 411 Pfam PF00764 Arginosuccinate synthase 8 394 2.4E-143 T 14-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_03420 ed673da59e604e41da85c1028185118d 411 SUPERFAMILY SSF52402 5 168 6.05E-44 T 14-10-2018 RY45_03420 ed673da59e604e41da85c1028185118d 411 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 400 50.469 T 14-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_03420 ed673da59e604e41da85c1028185118d 411 Gene3D G3DSA:3.40.50.620 5 175 1.3E-65 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_03420 ed673da59e604e41da85c1028185118d 411 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 397 6.4E-133 T 14-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_03420 ed673da59e604e41da85c1028185118d 411 SUPERFAMILY SSF69864 174 400 9.94E-84 T 14-10-2018 RY45_03420 ed673da59e604e41da85c1028185118d 411 Gene3D G3DSA:3.90.1260.10 177 404 3.1E-83 T 14-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_03420 ed673da59e604e41da85c1028185118d 411 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 14-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_03420 ed673da59e604e41da85c1028185118d 411 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 119 130 - T 14-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RY45_13750 7de28c0d726e64ac9298c35fac09029b 373 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 342 7.7E-86 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RY45_13750 7de28c0d726e64ac9298c35fac09029b 373 SUPERFAMILY SSF51395 1 365 1.61E-122 T 14-10-2018 RY45_13750 7de28c0d726e64ac9298c35fac09029b 373 Gene3D G3DSA:3.20.20.70 3 366 6.4E-137 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_08705 5554cca9a21de4c876ee02ca9befdb8b 506 Gene3D G3DSA:3.30.565.10 377 499 1.7E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_08705 5554cca9a21de4c876ee02ca9befdb8b 506 Pfam PF05231 MASE1 15 278 2.1E-11 T 14-10-2018 IPR007895 MASE1 RY45_08705 5554cca9a21de4c876ee02ca9befdb8b 506 Pfam PF07730 Histidine kinase 306 371 1.4E-12 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RY45_08705 5554cca9a21de4c876ee02ca9befdb8b 506 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 414 498 1.4E-6 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_08705 5554cca9a21de4c876ee02ca9befdb8b 506 SUPERFAMILY SSF55874 380 497 9.43E-18 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RY45_08705 5554cca9a21de4c876ee02ca9befdb8b 506 SMART SM00387 410 500 7.4E-9 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RY45_04115 fe430f7eb6339c6d7c8a499f3af7045d 164 Pfam PF01047 MarR family 53 109 7.3E-10 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_04115 fe430f7eb6339c6d7c8a499f3af7045d 164 Gene3D G3DSA:1.10.10.10 18 161 6.1E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_04115 fe430f7eb6339c6d7c8a499f3af7045d 164 SMART SM00347 46 146 2.7E-17 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RY45_04115 fe430f7eb6339c6d7c8a499f3af7045d 164 SUPERFAMILY SSF46785 28 160 3.26E-28 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_08830 5a2afb3f953a58af8993a41e45fdf35a 373 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 173 316 3.1E-11 T 14-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RY45_08830 5a2afb3f953a58af8993a41e45fdf35a 373 Gene3D G3DSA:3.40.50.1480 12 366 2.6E-36 T 14-10-2018 RY45_08830 5a2afb3f953a58af8993a41e45fdf35a 373 Gene3D G3DSA:3.40.50.720 163 321 2.6E-36 T 14-10-2018 RY45_08830 5a2afb3f953a58af8993a41e45fdf35a 373 SUPERFAMILY SSF52283 12 160 9.69E-5 T 14-10-2018 RY45_08830 5a2afb3f953a58af8993a41e45fdf35a 373 SMART SM00997 159 321 1.1E-28 T 14-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RY45_08830 5a2afb3f953a58af8993a41e45fdf35a 373 SUPERFAMILY SSF51735 172 318 1.19E-15 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_08110 0aef6bc5e65bda8ce60003f642c3b61a 424 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 240 277 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_08110 0aef6bc5e65bda8ce60003f642c3b61a 424 SUPERFAMILY SSF53383 4 419 4.19E-128 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_08110 0aef6bc5e65bda8ce60003f642c3b61a 424 Gene3D G3DSA:3.40.640.10 59 328 3.7E-168 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_08110 0aef6bc5e65bda8ce60003f642c3b61a 424 Gene3D G3DSA:3.90.1150.10 9 412 3.7E-168 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RY45_08110 0aef6bc5e65bda8ce60003f642c3b61a 424 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 2 422 49.137 T 14-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 RY45_08110 0aef6bc5e65bda8ce60003f642c3b61a 424 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 11 419 1.0E-179 T 14-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 RY45_08110 0aef6bc5e65bda8ce60003f642c3b61a 424 Pfam PF00202 Aminotransferase class-III 25 419 1.0E-126 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_08110 0aef6bc5e65bda8ce60003f642c3b61a 424 PIRSF PIRSF000521 22 421 1.6E-26 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RY45_01750 7ced2d419a54f7dbf746e9a9ddd7aa98 216 Pfam PF00805 Pentapeptide repeats (8 copies) 7 42 7.5E-7 T 14-10-2018 IPR001646 Pentapeptide repeat RY45_01750 7ced2d419a54f7dbf746e9a9ddd7aa98 216 Pfam PF00805 Pentapeptide repeats (8 copies) 56 81 8.5E-4 T 14-10-2018 IPR001646 Pentapeptide repeat RY45_01750 7ced2d419a54f7dbf746e9a9ddd7aa98 216 Pfam PF00805 Pentapeptide repeats (8 copies) 172 198 8.9E-6 T 14-10-2018 IPR001646 Pentapeptide repeat RY45_01750 7ced2d419a54f7dbf746e9a9ddd7aa98 216 SUPERFAMILY SSF141571 12 196 3.66E-38 T 14-10-2018 RY45_01750 7ced2d419a54f7dbf746e9a9ddd7aa98 216 Gene3D G3DSA:2.160.20.80 1 216 3.0E-92 T 14-10-2018 RY45_01750 7ced2d419a54f7dbf746e9a9ddd7aa98 216 Pfam PF13599 Pentapeptide repeats (9 copies) 97 163 1.6E-10 T 14-10-2018 IPR001646 Pentapeptide repeat RY45_08715 8838d0e543aa20c19fa1ec88c6ea7250 131 SUPERFAMILY SSF54534 44 122 5.36E-20 T 14-10-2018 RY45_08715 8838d0e543aa20c19fa1ec88c6ea7250 131 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 45 120 3.5E-22 T 14-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RY45_08715 8838d0e543aa20c19fa1ec88c6ea7250 131 Gene3D G3DSA:1.10.286.20 1 38 1.1E-5 T 14-10-2018 RY45_08715 8838d0e543aa20c19fa1ec88c6ea7250 131 Pfam PF14760 Rnk N-terminus 4 37 2.4E-8 T 14-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain RY45_08715 8838d0e543aa20c19fa1ec88c6ea7250 131 Gene3D G3DSA:3.10.50.30 40 131 5.3E-32 T 14-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RY45_08715 8838d0e543aa20c19fa1ec88c6ea7250 131 PIRSF PIRSF006092 12 123 1.9E-25 T 14-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RY45_19860 b60b9599ae54c67e164c091187ca75fe 447 Pfam PF07885 Ion channel 372 442 8.9E-10 T 14-10-2018 IPR013099 Potassium channel domain RY45_19860 b60b9599ae54c67e164c091187ca75fe 447 SUPERFAMILY SSF81324 357 443 3.53E-12 T 14-10-2018 RY45_19860 b60b9599ae54c67e164c091187ca75fe 447 Gene3D G3DSA:1.10.287.70 362 447 3.9E-12 T 14-10-2018 RY45_08760 727e1dde2374a53328f26c2ed83faf3f 219 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 24 214 3.0E-48 T 14-10-2018 IPR018635 Uncharacterised protein family UPF0319 RY45_06875 b191fcd21185605785059893777ec65c 453 Pfam PF00209 Sodium:neurotransmitter symporter family 156 448 3.6E-31 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_06875 b191fcd21185605785059893777ec65c 453 Pfam PF00209 Sodium:neurotransmitter symporter family 9 125 1.4E-22 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_06875 b191fcd21185605785059893777ec65c 453 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 33 47 - T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_06875 b191fcd21185605785059893777ec65c 453 SUPERFAMILY SSF161070 9 450 3.92E-128 T 14-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 RY45_06875 b191fcd21185605785059893777ec65c 453 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 17 38 3.1E-13 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_06875 b191fcd21185605785059893777ec65c 453 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 46 65 3.1E-13 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_06875 b191fcd21185605785059893777ec65c 453 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 389 409 3.1E-13 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_06875 b191fcd21185605785059893777ec65c 453 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 303 322 3.1E-13 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 Pfam PF03466 LysR substrate binding domain 82 288 4.3E-49 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 Gene3D G3DSA:1.10.10.10 1 83 9.9E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 SUPERFAMILY SSF46785 2 81 1.49E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 Gene3D G3DSA:3.40.190.10 85 286 7.6E-65 T 14-10-2018 RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 Gene3D G3DSA:3.40.190.10 157 259 7.6E-65 T 14-10-2018 RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 57 4.3E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 34 5.4E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 5.4E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 13 24 5.4E-5 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03670 44ff533540c2e757d2f828c9c1d271ba 311 SUPERFAMILY SSF53850 83 292 1.28E-50 T 14-10-2018 RY45_14820 7480ce8f869eb9717c650ffacad78990 139 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RY45_14820 7480ce8f869eb9717c650ffacad78990 139 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 138 1.9E-49 T 14-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 RY45_14820 7480ce8f869eb9717c650ffacad78990 139 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 91 136 5.3E-13 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_14820 7480ce8f869eb9717c650ffacad78990 139 Pfam PF00460 Flagella basal body rod protein 7 32 1.1E-7 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_20435 cde38f1d856341eb5e0614a15bf90a7e 126 Pfam PF06295 Protein of unknown function (DUF1043) 11 123 1.6E-27 T 14-10-2018 IPR009386 Protein of unknown function DUF1043 RY45_20435 cde38f1d856341eb5e0614a15bf90a7e 126 PIRSF PIRSF006318 1 126 3.2E-37 T 14-10-2018 IPR009386 Protein of unknown function DUF1043 RY45_20435 cde38f1d856341eb5e0614a15bf90a7e 126 SUPERFAMILY SSF47170 32 91 4.58E-5 T 14-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily RY45_01865 c97847c6a89bb887ed60725b47e76375 114 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 1.1E-38 T 14-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RY45_01865 c97847c6a89bb887ed60725b47e76375 114 Gene3D G3DSA:3.90.470.10 1 113 9.8E-47 T 14-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_01865 c97847c6a89bb887ed60725b47e76375 114 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 2.5E-47 T 14-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_01865 c97847c6a89bb887ed60725b47e76375 114 SUPERFAMILY SSF54843 1 110 6.8E-44 T 14-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 RY45_01865 c97847c6a89bb887ed60725b47e76375 114 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 14-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RY45_01865 c97847c6a89bb887ed60725b47e76375 114 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.16 T 14-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RY45_09180 c5f70d8c16ae588281becc4e340b0877 116 SUPERFAMILY SSF52833 5 115 6.62E-31 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_09180 c5f70d8c16ae588281becc4e340b0877 116 Gene3D G3DSA:3.40.30.10 1 116 1.8E-45 T 14-10-2018 RY45_09180 c5f70d8c16ae588281becc4e340b0877 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 5 115 1.6E-43 T 14-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 RY45_09180 c5f70d8c16ae588281becc4e340b0877 116 Pfam PF03960 ArsC family 7 114 2.3E-17 T 14-10-2018 IPR006660 Arsenate reductase-like RY45_08480 6d35fad4d3740a66197937e605bb9ce8 270 Gene3D G3DSA:3.40.50.720 5 268 1.2E-51 T 14-10-2018 RY45_08480 6d35fad4d3740a66197937e605bb9ce8 270 SUPERFAMILY SSF51735 13 255 1.1E-24 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_11105 7f1b7621afc97e54f81569c15f3de94a 229 Pfam PF08808 RES domain 60 214 5.2E-26 T 14-10-2018 IPR014914 RES domain RY45_11105 7f1b7621afc97e54f81569c15f3de94a 229 SMART SM00953 79 206 2.6E-36 T 14-10-2018 IPR014914 RES domain RY45_06070 947bf58e18372c85a74297f324c0163c 280 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 32 280 1.1E-97 T 14-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 RY45_06070 947bf58e18372c85a74297f324c0163c 280 SUPERFAMILY SSF111364 32 280 4.97E-80 T 14-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 RY45_06070 947bf58e18372c85a74297f324c0163c 280 Gene3D G3DSA:2.40.230.20 25 280 3.2E-83 T 14-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 RY45_01480 496fdaa37bad365208092c997123bd05 215 Pfam PF01810 LysE type translocator 15 202 1.1E-35 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_05900 d23d07ec7540fe1e71c07e3e9639f6f9 418 Gene3D G3DSA:3.40.50.150 135 407 2.6E-98 T 14-10-2018 RY45_05900 d23d07ec7540fe1e71c07e3e9639f6f9 418 PIRSF PIRSF003085 15 410 1.6E-116 T 14-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RY45_05900 d23d07ec7540fe1e71c07e3e9639f6f9 418 SUPERFAMILY SSF53335 18 357 9.27E-85 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_05900 d23d07ec7540fe1e71c07e3e9639f6f9 418 Pfam PF02353 Mycolic acid cyclopropane synthetase 131 399 2.1E-80 T 14-10-2018 RY45_17905 8577d9b0edb39ef084752f9c0cf15f12 237 Pfam PF02390 Putative methyltransferase 62 231 1.7E-62 T 14-10-2018 RY45_17905 8577d9b0edb39ef084752f9c0cf15f12 237 Gene3D G3DSA:3.40.50.150 28 237 8.6E-74 T 14-10-2018 RY45_17905 8577d9b0edb39ef084752f9c0cf15f12 237 SUPERFAMILY SSF53335 14 235 4.1E-44 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_17905 8577d9b0edb39ef084752f9c0cf15f12 237 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 50 236 3.2E-68 T 14-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 RY45_17905 8577d9b0edb39ef084752f9c0cf15f12 237 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 22 236 30.828 T 14-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 RY45_19725 0f903cd14b05277f163d6c3fa7db72a8 337 Pfam PF08402 TOBE domain 256 327 4.6E-17 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RY45_19725 0f903cd14b05277f163d6c3fa7db72a8 337 SUPERFAMILY SSF50331 238 328 2.69E-13 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RY45_19725 0f903cd14b05277f163d6c3fa7db72a8 337 Gene3D G3DSA:3.40.50.300 2 269 1.2E-73 T 14-10-2018 RY45_19725 0f903cd14b05277f163d6c3fa7db72a8 337 SUPERFAMILY SSF52540 4 241 4.94E-83 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_19725 0f903cd14b05277f163d6c3fa7db72a8 337 SMART SM00382 28 211 2.6E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_19725 0f903cd14b05277f163d6c3fa7db72a8 337 Pfam PF00005 ABC transporter 20 161 5.1E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_19725 0f903cd14b05277f163d6c3fa7db72a8 337 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_07980 df9c5e98eb7ba2ded8f3ec01a5ca8f4a 112 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 6 106 29.425 T 14-10-2018 IPR026592 Outer membrane protein assembly factor BamE RY45_07980 df9c5e98eb7ba2ded8f3ec01a5ca8f4a 112 Pfam PF04355 SmpA / OmlA family 30 98 6.9E-26 T 14-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 RY45_07980 df9c5e98eb7ba2ded8f3ec01a5ca8f4a 112 Gene3D G3DSA:3.30.1450.10 29 109 4.4E-27 T 14-10-2018 IPR037873 BamE-like RY45_20470 cae0a1f999e796073a075e1432d88204 216 TIGRFAM TIGR03579 EF_0833: conserved hypothetical protein EF_0833/AHA_3914 8 215 1.2E-121 T 14-10-2018 IPR025456 Protein of unknown function DUF4310 RY45_20470 cae0a1f999e796073a075e1432d88204 216 Pfam PF14187 Domain of unknown function (DUF4310) 7 213 1.1E-103 T 14-10-2018 IPR025456 Protein of unknown function DUF4310 RY45_03460 603a8f29134baaf8f75d3e06a6d90db0 333 Gene3D G3DSA:3.40.190.10 29 297 2.6E-132 T 14-10-2018 RY45_03460 603a8f29134baaf8f75d3e06a6d90db0 333 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 21 328 1.4E-143 T 14-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RY45_03460 603a8f29134baaf8f75d3e06a6d90db0 333 Pfam PF13531 Bacterial extracellular solute-binding protein 44 282 7.2E-45 T 14-10-2018 RY45_03460 603a8f29134baaf8f75d3e06a6d90db0 333 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 147 155 - T 14-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 RY45_03460 603a8f29134baaf8f75d3e06a6d90db0 333 Gene3D G3DSA:3.40.190.10 116 327 2.6E-132 T 14-10-2018 RY45_03460 603a8f29134baaf8f75d3e06a6d90db0 333 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 50 62 - T 14-10-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site RY45_03460 603a8f29134baaf8f75d3e06a6d90db0 333 SUPERFAMILY SSF53850 23 330 2.79E-87 T 14-10-2018 RY45_08125 4d7b89b7488815d40a8e212538b01e86 267 Pfam PF08241 Methyltransferase domain 57 148 2.9E-29 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RY45_08125 4d7b89b7488815d40a8e212538b01e86 267 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 17 263 3.0E-63 T 14-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 RY45_08125 4d7b89b7488815d40a8e212538b01e86 267 Gene3D G3DSA:3.40.50.150 17 207 4.5E-41 T 14-10-2018 RY45_08125 4d7b89b7488815d40a8e212538b01e86 267 SUPERFAMILY SSF53335 16 203 4.82E-45 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_08125 4d7b89b7488815d40a8e212538b01e86 267 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 9 266 29.785 T 14-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 RY45_08955 b94386dec2350138ac6eca8c345eda1c 156 Pfam PF03061 Thioesterase superfamily 21 92 5.9E-20 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RY45_08955 b94386dec2350138ac6eca8c345eda1c 156 SUPERFAMILY SSF54637 3 150 3.25E-43 T 14-10-2018 IPR029069 HotDog domain superfamily RY45_08955 b94386dec2350138ac6eca8c345eda1c 156 Gene3D G3DSA:3.10.129.10 1 153 6.1E-46 T 14-10-2018 RY45_15420 addc6cd8d4457c1fb467ff860a57c1a3 268 Pfam PF08021 Siderophore-interacting FAD-binding domain 14 129 2.4E-37 T 14-10-2018 IPR013113 FAD-binding 9, siderophore-interacting RY45_15420 addc6cd8d4457c1fb467ff860a57c1a3 268 Pfam PF04954 Siderophore-interacting protein 136 252 9.0E-30 T 14-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain RY45_15420 addc6cd8d4457c1fb467ff860a57c1a3 268 Gene3D G3DSA:2.40.30.10 2 129 4.2E-36 T 14-10-2018 RY45_15420 addc6cd8d4457c1fb467ff860a57c1a3 268 Gene3D G3DSA:3.40.50.80 132 268 1.6E-36 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_15420 addc6cd8d4457c1fb467ff860a57c1a3 268 SUPERFAMILY SSF63380 5 131 6.45E-15 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_00290 d84b38fc5b7d3c7eae63511d6f468464 825 Pfam PF16967 E-set like domain 287 354 7.3E-27 T 14-10-2018 IPR032636 Pilus assembly protein, E-set like domain RY45_00290 d84b38fc5b7d3c7eae63511d6f468464 825 Pfam PF15976 CS1-pili formation C-terminal 721 814 8.6E-28 T 14-10-2018 IPR031917 Pilus assembly protein, C-terminal domain RY45_10870 37fb3fff7c3862b40222d659ea7c0ab2 253 Pfam PF03942 DTW domain 32 217 1.8E-39 T 14-10-2018 IPR005636 DTW RY45_10870 37fb3fff7c3862b40222d659ea7c0ab2 253 SMART SM01144 30 223 1.6E-73 T 14-10-2018 IPR005636 DTW RY45_14895 7b65a46a8ea4b7b2972a3190a2692587 810 SUPERFAMILY SSF51998 3 809 2.11E-224 T 14-10-2018 RY45_14895 7b65a46a8ea4b7b2972a3190a2692587 810 Pfam PF01228 Glycine radical 688 791 5.9E-29 T 14-10-2018 IPR001150 Glycine radical domain GO:0003824 RY45_14895 7b65a46a8ea4b7b2972a3190a2692587 810 Gene3D G3DSA:3.20.70.20 10 810 2.5E-270 T 14-10-2018 RY45_14895 7b65a46a8ea4b7b2972a3190a2692587 810 PIRSF PIRSF000379 57 810 3.5E-169 T 14-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 RY45_14895 7b65a46a8ea4b7b2972a3190a2692587 810 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 11 810 0.0 T 14-10-2018 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 RY45_14895 7b65a46a8ea4b7b2972a3190a2692587 810 ProSitePatterns PS00850 Glycine radical domain signature. 781 789 - T 14-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RY45_14895 7b65a46a8ea4b7b2972a3190a2692587 810 Pfam PF02901 Pyruvate formate lyase-like 11 671 1.1E-210 T 14-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 RY45_00185 95d2ef51c080d769adbe48a16e2229c5 243 Gene3D G3DSA:3.40.1280.10 1 202 5.7E-59 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_00185 95d2ef51c080d769adbe48a16e2229c5 243 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 217 2.5E-20 T 14-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 RY45_00185 95d2ef51c080d769adbe48a16e2229c5 243 SUPERFAMILY SSF75217 4 173 7.19E-49 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_00185 95d2ef51c080d769adbe48a16e2229c5 243 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 196 36.082 T 14-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 RY45_00185 95d2ef51c080d769adbe48a16e2229c5 243 Pfam PF00588 SpoU rRNA Methylase family 20 159 1.2E-33 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RY45_02605 459525e7ba88882c97a6f6aec6d88825 144 Pfam PF13673 Acetyltransferase (GNAT) domain 56 123 9.3E-13 T 14-10-2018 IPR000182 GNAT domain RY45_02605 459525e7ba88882c97a6f6aec6d88825 144 Gene3D G3DSA:3.40.630.30 1 134 6.7E-32 T 14-10-2018 RY45_02605 459525e7ba88882c97a6f6aec6d88825 144 SUPERFAMILY SSF55729 1 140 6.8E-25 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_16440 3a522bed39948916cdceaad434363bf7 535 SUPERFAMILY SSF52540 8 222 4.61E-10 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16440 3a522bed39948916cdceaad434363bf7 535 Pfam PF05036 Sporulation related domain 450 521 5.6E-8 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 RY45_16440 3a522bed39948916cdceaad434363bf7 535 SUPERFAMILY SSF110997 449 514 7.59E-5 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RY45_16440 3a522bed39948916cdceaad434363bf7 535 Gene3D G3DSA:3.30.70.1070 438 534 6.3E-28 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RY45_09225 6030ff73781b3475eed3326f398973b2 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 216 4.5E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_09225 6030ff73781b3475eed3326f398973b2 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 116 4.1E-23 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_09225 6030ff73781b3475eed3326f398973b2 230 Gene3D G3DSA:1.10.3720.10 1 224 3.2E-55 T 14-10-2018 IPR035906 MetI-like superfamily RY45_09225 6030ff73781b3475eed3326f398973b2 230 SUPERFAMILY SSF161098 10 210 1.22E-43 T 14-10-2018 IPR035906 MetI-like superfamily RY45_13290 c36f792a9e35fadcb0d13f0dff926bff 565 Pfam PF02652 L-lactate permease 7 547 4.8E-103 T 14-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RY45_08400 08c1e7c6d59090eb05b4e177eb33f8a0 394 PIRSF PIRSF029172 8 394 3.1E-150 T 14-10-2018 IPR027020 Protein ynjB RY45_08400 08c1e7c6d59090eb05b4e177eb33f8a0 394 Gene3D G3DSA:3.40.190.10 164 308 3.1E-18 T 14-10-2018 RY45_08400 08c1e7c6d59090eb05b4e177eb33f8a0 394 Gene3D G3DSA:3.40.190.10 80 362 3.1E-18 T 14-10-2018 RY45_08400 08c1e7c6d59090eb05b4e177eb33f8a0 394 Pfam PF13416 Bacterial extracellular solute-binding protein 73 350 2.1E-23 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein RY45_08400 08c1e7c6d59090eb05b4e177eb33f8a0 394 SUPERFAMILY SSF53850 44 392 4.08E-37 T 14-10-2018 RY45_02900 1ce1eef85c7749c410b57ae3f5e0aca6 93 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 3 93 2.8E-25 T 14-10-2018 IPR007711 Toxin HigB-1 RY45_02900 1ce1eef85c7749c410b57ae3f5e0aca6 93 SUPERFAMILY SSF143011 1 93 2.35E-17 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily RY45_02900 1ce1eef85c7749c410b57ae3f5e0aca6 93 Gene3D G3DSA:3.30.2310.20 1 93 1.7E-36 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 292 735 3.0E-176 T 14-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 SMART SM00481 7 74 3.8E-23 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 Pfam PF14579 Helix-hairpin-helix motif 808 897 7.7E-26 T 14-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 Gene3D G3DSA:3.20.20.140 1 270 1.6E-91 T 14-10-2018 RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 Gene3D G3DSA:2.40.50.140 983 1072 1.6E-7 T 14-10-2018 RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 Pfam PF01336 OB-fold nucleic acid binding domain 996 1069 1.2E-8 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1030 0.0 T 14-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 SUPERFAMILY SSF89550 6 263 1.73E-11 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 Gene3D G3DSA:1.10.10.1600 433 510 3.7E-34 T 14-10-2018 RY45_06370 778dad9920cd95d95e5b493468b3a041 1159 Pfam PF02811 PHP domain 8 171 6.6E-42 T 14-10-2018 IPR004013 PHP domain GO:0003824 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 25 659 1.6E-171 T 14-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 SUPERFAMILY SSF51998 9 691 1.1E-168 T 14-10-2018 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 Gene3D G3DSA:3.20.70.20 12 666 3.5E-157 T 14-10-2018 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 176 195 1.2E-15 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 538 1.2E-15 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 393 415 1.2E-15 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 355 378 1.2E-15 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 PRINTS PR01183 Ribonucleotide reductase large chain signature 317 328 1.2E-15 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_04860 50150c1d3ce25544b73bbf11b2814118 715 Pfam PF02867 Ribonucleotide reductase, barrel domain 101 651 7.5E-140 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RY45_18850 327bd1e3901a5d515f6d958113ba28fc 792 Pfam PF07238 PilZ domain 474 550 5.9E-5 T 14-10-2018 IPR009875 PilZ domain GO:0035438 RY45_18850 327bd1e3901a5d515f6d958113ba28fc 792 Pfam PF07238 PilZ domain 143 204 3.1E-6 T 14-10-2018 IPR009875 PilZ domain GO:0035438 RY45_18850 327bd1e3901a5d515f6d958113ba28fc 792 SUPERFAMILY SSF141371 474 530 2.35E-7 T 14-10-2018 RY45_18850 327bd1e3901a5d515f6d958113ba28fc 792 SUPERFAMILY SSF141371 143 200 2.35E-5 T 14-10-2018 RY45_21425 88535507d1964c0f3b1bf67eb82e987f 221 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 5 216 3.6E-54 T 14-10-2018 IPR012807 Anti-sigma factor ChrR, putative RY45_21425 88535507d1964c0f3b1bf67eb82e987f 221 Gene3D G3DSA:2.60.120.10 112 201 3.4E-22 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_21425 88535507d1964c0f3b1bf67eb82e987f 221 SUPERFAMILY SSF51182 126 198 2.62E-16 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_21425 88535507d1964c0f3b1bf67eb82e987f 221 Gene3D G3DSA:1.10.10.1320 1 111 1.5E-13 T 14-10-2018 RY45_21425 88535507d1964c0f3b1bf67eb82e987f 221 Pfam PF12973 ChrR Cupin-like domain 129 196 2.9E-13 T 14-10-2018 IPR025979 ChrR-like cupin domain RY45_11475 7d0ed1aafe143e265945c56bd09908e3 104 Gene3D G3DSA:1.10.10.710 21 90 1.2E-7 T 14-10-2018 IPR038627 YebG-like superfamily RY45_11475 7d0ed1aafe143e265945c56bd09908e3 104 Pfam PF07130 YebG protein 1 74 4.6E-32 T 14-10-2018 IPR009813 Uncharacterised protein family YebG RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 Pfam PF08447 PAS fold 32 114 4.9E-18 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 303 483 1.7E-39 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 SMART SM00283 256 517 9.4E-51 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 SUPERFAMILY SSF58104 240 516 5.62E-68 T 14-10-2018 RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 Gene3D G3DSA:3.30.450.20 17 144 1.7E-27 T 14-10-2018 RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 277 306 6.4E-21 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 383 412 6.4E-21 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 354 381 6.4E-21 T 14-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 SUPERFAMILY SSF55785 21 115 1.19E-28 T 14-10-2018 IPR035965 PAS domain superfamily RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 110 1.9E-15 T 14-10-2018 IPR000014 PAS domain RY45_16000 b22b302e4b6705b9196aa66b5f6231d6 517 Gene3D G3DSA:1.10.287.950 210 517 4.2E-63 T 14-10-2018 RY45_10450 2d11631ca930a4302cc9c3ca8f0e8d53 301 SUPERFAMILY SSF46785 4 111 2.44E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_10450 2d11631ca930a4302cc9c3ca8f0e8d53 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.5E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_10450 2d11631ca930a4302cc9c3ca8f0e8d53 301 Pfam PF03466 LysR substrate binding domain 90 290 4.3E-42 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_10450 2d11631ca930a4302cc9c3ca8f0e8d53 301 SUPERFAMILY SSF53850 92 293 1.25E-43 T 14-10-2018 RY45_10450 2d11631ca930a4302cc9c3ca8f0e8d53 301 Gene3D G3DSA:3.40.190.290 92 290 1.0E-55 T 14-10-2018 RY45_10450 2d11631ca930a4302cc9c3ca8f0e8d53 301 Gene3D G3DSA:1.10.10.10 3 89 4.5E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00720 0fd5df5f48e88f1e2029a41d4b1cc960 261 Pfam PF01026 TatD related DNase 2 256 1.2E-65 T 14-10-2018 IPR001130 TatD family GO:0016788 RY45_00720 0fd5df5f48e88f1e2029a41d4b1cc960 261 PIRSF PIRSF005902 1 260 1.9E-70 T 14-10-2018 IPR001130 TatD family GO:0016788 RY45_00720 0fd5df5f48e88f1e2029a41d4b1cc960 261 Gene3D G3DSA:3.20.20.140 1 261 2.6E-92 T 14-10-2018 RY45_00720 0fd5df5f48e88f1e2029a41d4b1cc960 261 SUPERFAMILY SSF51556 1 257 1.01E-80 T 14-10-2018 IPR032466 Metal-dependent hydrolase RY45_12970 82722039828dad1cc1a99d301fbcae15 199 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 106 117 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_12970 82722039828dad1cc1a99d301fbcae15 199 Pfam PF12838 4Fe-4S dicluster domain 105 168 3.0E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_12970 82722039828dad1cc1a99d301fbcae15 199 Gene3D G3DSA:3.30.70.20 81 147 6.2E-28 T 14-10-2018 RY45_12970 82722039828dad1cc1a99d301fbcae15 199 SUPERFAMILY SSF54862 2 176 2.14E-40 T 14-10-2018 RY45_12970 82722039828dad1cc1a99d301fbcae15 199 Gene3D G3DSA:3.30.70.20 6 178 6.2E-28 T 14-10-2018 RY45_16645 ef348ebe0ca8966176ca741a8a0c7055 208 Pfam PF09997 Predicted membrane protein (DUF2238) 38 178 5.3E-55 T 14-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 RY45_16645 ef348ebe0ca8966176ca741a8a0c7055 208 PIRSF PIRSF020606 1 200 1.8E-74 T 14-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 RY45_04555 1eae85b1e5700fb42987a80f7e44815e 389 SUPERFAMILY SSF53697 18 375 7.18E-50 T 14-10-2018 RY45_04555 1eae85b1e5700fb42987a80f7e44815e 389 Gene3D G3DSA:3.40.50.10490 2 199 3.6E-55 T 14-10-2018 RY45_04555 1eae85b1e5700fb42987a80f7e44815e 389 Gene3D G3DSA:3.40.50.10490 208 377 7.4E-64 T 14-10-2018 RY45_04555 1eae85b1e5700fb42987a80f7e44815e 389 Pfam PF01380 SIS domain 226 357 1.7E-14 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_04555 1eae85b1e5700fb42987a80f7e44815e 389 Pfam PF01380 SIS domain 55 190 5.5E-15 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RY45_04555 1eae85b1e5700fb42987a80f7e44815e 389 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 14 383 1.7E-161 T 14-10-2018 IPR014180 Sugar isomerase, AgaS GO:0016853 RY45_02375 0f564482f53705febdd41376136b9416 238 Pfam PF01914 MarC family integral membrane protein 3 204 4.4E-46 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RY45_02375 0f564482f53705febdd41376136b9416 238 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 3 201 7.7E-30 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RY45_07500 d3ee96b948b6af782ce64d1ba8a8fcb9 263 Gene3D G3DSA:2.30.30.40 200 248 9.3E-6 T 14-10-2018 RY45_03490 4a098ba263a7834f374da5363aea3e82 474 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 25 188 5.0E-40 T 14-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal RY45_03490 4a098ba263a7834f374da5363aea3e82 474 SUPERFAMILY SSF81296 25 192 1.4E-64 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_03490 4a098ba263a7834f374da5363aea3e82 474 Gene3D G3DSA:2.60.40.2550 309 404 7.0E-25 T 14-10-2018 RY45_03490 4a098ba263a7834f374da5363aea3e82 474 Gene3D G3DSA:3.30.70.2150 199 307 7.4E-36 T 14-10-2018 RY45_03490 4a098ba263a7834f374da5363aea3e82 474 Gene3D G3DSA:2.70.50.50 23 192 5.4E-74 T 14-10-2018 RY45_11715 e99c076491647ac6fbf748a82fb93c3d 214 Gene3D G3DSA:3.40.30.10 3 192 2.6E-40 T 14-10-2018 RY45_11715 e99c076491647ac6fbf748a82fb93c3d 214 SUPERFAMILY SSF52833 1 77 1.28E-15 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_11715 e99c076491647ac6fbf748a82fb93c3d 214 Pfam PF13410 Glutathione S-transferase, C-terminal domain 123 185 2.8E-9 T 14-10-2018 RY45_11715 e99c076491647ac6fbf748a82fb93c3d 214 SUPERFAMILY SSF47616 88 211 8.53E-22 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_11715 e99c076491647ac6fbf748a82fb93c3d 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 76 3.7E-14 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_11715 e99c076491647ac6fbf748a82fb93c3d 214 Gene3D G3DSA:1.20.1050.10 78 189 2.6E-40 T 14-10-2018 RY45_12215 c235ba6238aae54e6d8e53371e1371e7 62 Pfam PF14056 Domain of unknown function (DUF4250) 8 61 5.5E-23 T 14-10-2018 IPR025346 Protein of unknown function DUF4250 RY45_16840 79389f12d64260cd68606d606ec3e551 216 Pfam PF08721 TnsA endonuclease C terminal 126 201 6.1E-9 T 14-10-2018 IPR014832 TnsA endonuclease C-terminal RY45_16840 79389f12d64260cd68606d606ec3e551 216 Pfam PF08722 TnsA endonuclease N terminal 44 124 5.7E-16 T 14-10-2018 IPR014833 TnsA endonuclease, N-terminal RY45_17605 6d5e0b83460bf5a436c5bae077043dab 143 SUPERFAMILY SSF52402 4 142 8.37E-42 T 14-10-2018 RY45_17605 6d5e0b83460bf5a436c5bae077043dab 143 PRINTS PR01438 Universal stress protein signature 120 142 6.5E-21 T 14-10-2018 IPR006015 Universal stress protein A RY45_17605 6d5e0b83460bf5a436c5bae077043dab 143 PRINTS PR01438 Universal stress protein signature 4 22 6.5E-21 T 14-10-2018 IPR006015 Universal stress protein A RY45_17605 6d5e0b83460bf5a436c5bae077043dab 143 PRINTS PR01438 Universal stress protein signature 102 114 6.5E-21 T 14-10-2018 IPR006015 Universal stress protein A RY45_17605 6d5e0b83460bf5a436c5bae077043dab 143 Pfam PF00582 Universal stress protein family 4 142 1.7E-35 T 14-10-2018 IPR006016 UspA RY45_17605 6d5e0b83460bf5a436c5bae077043dab 143 Gene3D G3DSA:3.40.50.620 2 142 1.5E-42 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_17605 6d5e0b83460bf5a436c5bae077043dab 143 PIRSF PIRSF006276 3 143 2.1E-25 T 14-10-2018 IPR006015 Universal stress protein A RY45_18045 26f311c75f02da3c3812bba407368860 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 8.3E-24 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RY45_18045 26f311c75f02da3c3812bba407368860 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 8.3E-24 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RY45_18045 26f311c75f02da3c3812bba407368860 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 8.3E-24 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RY45_18045 26f311c75f02da3c3812bba407368860 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 8.3E-24 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RY45_18045 26f311c75f02da3c3812bba407368860 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 28.99 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RY45_18045 26f311c75f02da3c3812bba407368860 98 Gene3D G3DSA:1.10.10.60 1 98 1.4E-30 T 14-10-2018 RY45_18045 26f311c75f02da3c3812bba407368860 98 PIRSF PIRSF002097 1 98 3.6E-42 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RY45_18045 26f311c75f02da3c3812bba407368860 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-12 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_18045 26f311c75f02da3c3812bba407368860 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-12 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_18045 26f311c75f02da3c3812bba407368860 98 SUPERFAMILY SSF46689 6 98 2.72E-25 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_18045 26f311c75f02da3c3812bba407368860 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.4E-13 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RY45_13000 393b15386cdec7eb10947275a4f9539a 185 Pfam PF12838 4Fe-4S dicluster domain 39 89 3.6E-12 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13000 393b15386cdec7eb10947275a4f9539a 185 Gene3D G3DSA:3.30.70.3270 18 139 3.1E-25 T 14-10-2018 RY45_13000 393b15386cdec7eb10947275a4f9539a 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13000 393b15386cdec7eb10947275a4f9539a 185 SUPERFAMILY SSF54862 18 118 2.72E-22 T 14-10-2018 RY45_20660 8ef42dcda5728c8e5319aaa8b17bcd26 203 Gene3D G3DSA:2.40.160.20 21 203 7.4E-70 T 14-10-2018 RY45_20660 8ef42dcda5728c8e5319aaa8b17bcd26 203 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 195 203 - T 14-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 RY45_20660 8ef42dcda5728c8e5319aaa8b17bcd26 203 Pfam PF03922 OmpW family 22 203 1.8E-56 T 14-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 RY45_20660 8ef42dcda5728c8e5319aaa8b17bcd26 203 SUPERFAMILY SSF56925 22 203 1.6E-31 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RY45_19175 ac8b5da957a555b7d9952777e4c770db 221 Pfam PF09335 SNARE associated Golgi protein 48 172 2.8E-22 T 14-10-2018 IPR032816 SNARE associated Golgi protein RY45_13180 6dc04fba6700194c9b60aef538e90205 578 Pfam PF01740 STAS domain 464 566 6.6E-11 T 14-10-2018 IPR002645 STAS domain RY45_13180 6dc04fba6700194c9b60aef538e90205 578 Gene3D G3DSA:3.30.750.24 454 568 4.0E-23 T 14-10-2018 IPR036513 STAS domain superfamily RY45_13180 6dc04fba6700194c9b60aef538e90205 578 SUPERFAMILY SSF52091 463 568 6.67E-14 T 14-10-2018 IPR036513 STAS domain superfamily RY45_13180 6dc04fba6700194c9b60aef538e90205 578 TIGRFAM TIGR00815 sulP: sulfate permease 24 566 1.7E-120 T 14-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 RY45_13180 6dc04fba6700194c9b60aef538e90205 578 Pfam PF00916 Sulfate permease family 31 417 8.8E-77 T 14-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RY45_04550 f7303caefa9812559292f2e40e83d024 157 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 3 152 4.2E-68 T 14-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 RY45_04550 f7303caefa9812559292f2e40e83d024 157 Gene3D G3DSA:3.40.35.10 1 156 7.0E-54 T 14-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 RY45_04550 f7303caefa9812559292f2e40e83d024 157 SUPERFAMILY SSF52728 3 156 8.76E-52 T 14-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 RY45_04550 f7303caefa9812559292f2e40e83d024 157 Pfam PF03830 PTS system sorbose subfamily IIB component 4 149 2.3E-50 T 14-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 RY45_12535 050c5abdb30f7fddb8fe82d07d95b730 145 Pfam PF00583 Acetyltransferase (GNAT) family 40 134 4.3E-13 T 14-10-2018 IPR000182 GNAT domain RY45_12535 050c5abdb30f7fddb8fe82d07d95b730 145 Gene3D G3DSA:3.40.630.30 7 142 6.3E-27 T 14-10-2018 RY45_12535 050c5abdb30f7fddb8fe82d07d95b730 145 SUPERFAMILY SSF55729 9 137 7.09E-26 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_18270 b19419906fe2314f5f2d12d457be7845 180 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 20 178 3.1E-74 T 14-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ RY45_18270 b19419906fe2314f5f2d12d457be7845 180 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 4 179 1.9E-77 T 14-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ RY45_06965 cb7122a3c1d9d8b9b81249ce4e3b7d0e 180 Gene3D G3DSA:3.15.10.40 14 179 2.6E-51 T 14-10-2018 RY45_06965 cb7122a3c1d9d8b9b81249ce4e3b7d0e 180 Pfam PF07273 Protein of unknown function (DUF1439) 20 172 2.1E-45 T 14-10-2018 IPR010835 Protein of unknown function DUF1439 RY45_22105 1ec205e67afbcc8293b030abbdb0d71e 264 ProSitePatterns PS00337 Beta-lactamase class-D active site. 49 59 - T 14-10-2018 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 RY45_22105 1ec205e67afbcc8293b030abbdb0d71e 264 Pfam PF00905 Penicillin binding protein transpeptidase domain 41 255 1.4E-46 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RY45_22105 1ec205e67afbcc8293b030abbdb0d71e 264 Gene3D G3DSA:3.40.710.10 24 264 2.5E-79 T 14-10-2018 RY45_22105 1ec205e67afbcc8293b030abbdb0d71e 264 SUPERFAMILY SSF56601 21 236 1.64E-31 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 PRINTS PR01021 OMPA domain signature 119 135 6.8E-16 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 PRINTS PR01021 OMPA domain signature 104 119 6.8E-16 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 PRINTS PR01021 OMPA domain signature 74 96 6.8E-16 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 174 30.509 T 14-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 ProSitePatterns PS01068 OmpA-like domain. 106 150 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 72 174 6.9E-44 T 14-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 Gene3D G3DSA:3.30.1330.60 47 174 1.8E-40 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 SUPERFAMILY SSF103088 60 173 8.11E-34 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_18630 a96b9542a73f13c9e28283d77f23ec67 174 Pfam PF00691 OmpA family 73 168 6.7E-22 T 14-10-2018 IPR006665 OmpA-like domain RY45_06985 4fa18057103fdf5ce04e21588331b415 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 209 7.0E-82 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_06985 4fa18057103fdf5ce04e21588331b415 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 1.1E-83 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_06985 4fa18057103fdf5ce04e21588331b415 217 Gene3D G3DSA:3.90.870.10 1 216 1.4E-92 T 14-10-2018 RY45_06985 4fa18057103fdf5ce04e21588331b415 217 SUPERFAMILY SSF55821 7 210 3.66E-85 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RY45_06985 4fa18057103fdf5ce04e21588331b415 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 42.335 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RY45_07380 70b7e2a0dfd0ae61e220de85f70245f2 270 Pfam PF04333 MlaA lipoprotein 48 239 1.4E-59 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RY45_07380 70b7e2a0dfd0ae61e220de85f70245f2 270 PRINTS PR01805 VacJ lipoprotein signature 49 62 7.2E-21 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RY45_07380 70b7e2a0dfd0ae61e220de85f70245f2 270 PRINTS PR01805 VacJ lipoprotein signature 67 83 7.2E-21 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RY45_07380 70b7e2a0dfd0ae61e220de85f70245f2 270 PRINTS PR01805 VacJ lipoprotein signature 154 171 7.2E-21 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RY45_07380 70b7e2a0dfd0ae61e220de85f70245f2 270 PRINTS PR01805 VacJ lipoprotein signature 118 135 7.2E-21 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RY45_11190 8cfbe29f2bf5ccbb4e05c2b897450051 106 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 56 64 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RY45_11190 8cfbe29f2bf5ccbb4e05c2b897450051 106 SUPERFAMILY SSF54292 23 103 1.31E-19 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RY45_11190 8cfbe29f2bf5ccbb4e05c2b897450051 106 Gene3D G3DSA:3.10.20.30 17 105 3.1E-16 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_11190 8cfbe29f2bf5ccbb4e05c2b897450051 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 33 95 1.7E-7 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RY45_02275 d03c94bdcc3f0122b882f7e5d795d049 187 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 2.1E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02275 d03c94bdcc3f0122b882f7e5d795d049 187 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 4.3E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_02275 d03c94bdcc3f0122b882f7e5d795d049 187 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_18535 adbdb495773f857f8fe8b9bb401caac5 148 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 137 1.1E-44 T 14-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 RY45_18535 adbdb495773f857f8fe8b9bb401caac5 148 Gene3D G3DSA:3.30.300.20 44 141 1.0E-24 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_18535 adbdb495773f857f8fe8b9bb401caac5 148 SUPERFAMILY SSF82784 1 137 1.83E-35 T 14-10-2018 IPR036102 OsmC/Ohr superfamily RY45_18535 adbdb495773f857f8fe8b9bb401caac5 148 Gene3D G3DSA:2.20.25.10 1 42 5.0E-13 T 14-10-2018 RY45_18535 adbdb495773f857f8fe8b9bb401caac5 148 Pfam PF02566 OsmC-like protein 38 135 3.6E-17 T 14-10-2018 IPR003718 OsmC/Ohr family RY45_16735 453ed5d24776b36171039637207070cb 162 Pfam PF07295 Zinc-ribbon containing domain 18 158 7.6E-46 T 14-10-2018 IPR009912 Zinc-ribbon containing domain RY45_11325 176b845f7daa4aadd15430726545fee0 205 SUPERFAMILY SSF52833 1 85 8.7E-21 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_11325 176b845f7daa4aadd15430726545fee0 205 Pfam PF13410 Glutathione S-transferase, C-terminal domain 137 192 3.9E-8 T 14-10-2018 RY45_11325 176b845f7daa4aadd15430726545fee0 205 Gene3D G3DSA:1.20.1050.10 88 196 3.5E-41 T 14-10-2018 RY45_11325 176b845f7daa4aadd15430726545fee0 205 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 76 2.2E-14 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RY45_11325 176b845f7daa4aadd15430726545fee0 205 Gene3D G3DSA:3.40.30.10 1 87 5.7E-25 T 14-10-2018 RY45_11325 176b845f7daa4aadd15430726545fee0 205 SUPERFAMILY SSF47616 83 203 9.05E-21 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RY45_12480 06b2b2c36dabed4cae4624e878a3da9f 503 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RY45_12480 06b2b2c36dabed4cae4624e878a3da9f 503 Gene3D G3DSA:3.40.605.10 24 482 9.7E-133 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RY45_12480 06b2b2c36dabed4cae4624e878a3da9f 503 SUPERFAMILY SSF53720 10 490 3.27E-138 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_12480 06b2b2c36dabed4cae4624e878a3da9f 503 Pfam PF00171 Aldehyde dehydrogenase family 23 483 4.9E-129 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RY45_12480 06b2b2c36dabed4cae4624e878a3da9f 503 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 13 487 4.5E-224 T 14-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 RY45_12480 06b2b2c36dabed4cae4624e878a3da9f 503 Gene3D G3DSA:3.40.309.10 257 454 9.7E-133 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RY45_09075 7736d2689162a92ddafe384e94cf97e3 120 Pfam PF04219 Protein of unknown function, DUF 8 94 3.5E-32 T 14-10-2018 IPR007335 Protein of unknown function DUF413 RY45_10775 f451e05a3d1fbb58a1e54acf55e20a61 594 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 51 579 2.1E-252 T 14-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 RY45_10775 f451e05a3d1fbb58a1e54acf55e20a61 594 SUPERFAMILY SSF53474 225 513 1.17E-37 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_10775 f451e05a3d1fbb58a1e54acf55e20a61 594 Gene3D G3DSA:3.40.50.1820 226 516 1.6E-11 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_10775 f451e05a3d1fbb58a1e54acf55e20a61 594 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 93 265 1.7E-73 T 14-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 RY45_13955 ef6ca617b6eebc240a1a34216f8dab4c 95 ProDom PD020116 PLASMID ACRG TYPE III G SECRETION REGULATOR LCRG LOCUS RESPONSE 1 95 3.0E-48 T 14-10-2018 IPR009863 Type III secretion protein, LcrG RY45_13955 ef6ca617b6eebc240a1a34216f8dab4c 95 TIGRFAM TIGR02573 LcrG_PcrG: type III secretion protein LcrG 10 95 4.8E-32 T 14-10-2018 IPR009863 Type III secretion protein, LcrG RY45_13955 ef6ca617b6eebc240a1a34216f8dab4c 95 Pfam PF07216 LcrG protein 10 95 2.6E-31 T 14-10-2018 IPR009863 Type III secretion protein, LcrG RY45_17655 d4e09c32303a5c33305129437c3ae7cf 605 PIRSF PIRSF002741 13 559 2.5E-82 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_17655 d4e09c32303a5c33305129437c3ae7cf 605 Gene3D G3DSA:3.40.190.10 18 311 6.6E-48 T 14-10-2018 RY45_17655 d4e09c32303a5c33305129437c3ae7cf 605 SUPERFAMILY SSF53850 47 559 9.5E-98 T 14-10-2018 RY45_17655 d4e09c32303a5c33305129437c3ae7cf 605 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 94 466 1.4E-62 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_17655 d4e09c32303a5c33305129437c3ae7cf 605 Gene3D G3DSA:3.10.105.10 312 530 3.1E-46 T 14-10-2018 RY45_05340 3c7da5970167b70165738bc28f510cd4 170 Pfam PF06228 Haem utilisation ChuX/HutX 23 160 1.9E-34 T 14-10-2018 IPR010413 Heme utilization carrier protein HutX-like RY45_05340 3c7da5970167b70165738bc28f510cd4 170 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 8 160 7.1E-64 T 14-10-2018 IPR010413 Heme utilization carrier protein HutX-like RY45_05340 3c7da5970167b70165738bc28f510cd4 170 SUPERFAMILY SSF144064 4 164 1.7E-53 T 14-10-2018 RY45_05340 3c7da5970167b70165738bc28f510cd4 170 Gene3D G3DSA:3.40.1570.10 1 169 5.0E-58 T 14-10-2018 RY45_05340 3c7da5970167b70165738bc28f510cd4 170 PIRSF PIRSF030840 1 166 3.3E-59 T 14-10-2018 IPR010413 Heme utilization carrier protein HutX-like RY45_19230 7bf42ae27c406b081f22dceba1a1a0ad 166 Gene3D G3DSA:1.10.10.10 113 161 2.1E-8 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19230 7bf42ae27c406b081f22dceba1a1a0ad 166 Gene3D G3DSA:1.10.10.10 68 111 3.6E-13 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_19230 7bf42ae27c406b081f22dceba1a1a0ad 166 Pfam PF02631 RecX family 43 159 1.1E-24 T 14-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RY45_19230 7bf42ae27c406b081f22dceba1a1a0ad 166 Hamap MF_01114 Regulatory protein RecX [recX]. 7 165 13.937 T 14-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RY45_19230 7bf42ae27c406b081f22dceba1a1a0ad 166 Gene3D G3DSA:1.10.10.10 19 65 4.1E-6 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 SUPERFAMILY SSF53613 1 302 6.7E-87 T 14-10-2018 IPR029056 Ribokinase-like RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 Gene3D G3DSA:3.40.1190.20 1 310 1.5E-106 T 14-10-2018 IPR029056 Ribokinase-like RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 Pfam PF00294 pfkB family carbohydrate kinase 1 294 3.2E-74 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 Hamap MF_01987 Ribokinase [rbsK]. 2 301 26.854 T 14-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 299 3.4E-113 T 14-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 PRINTS PR00990 Ribokinase signature 173 188 6.9E-36 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 PRINTS PR00990 Ribokinase signature 105 118 6.9E-36 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 PRINTS PR00990 Ribokinase signature 217 228 6.9E-36 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 PRINTS PR00990 Ribokinase signature 33 52 6.9E-36 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RY45_11300 d1a489c56c525d21ee807c294c771fbe 310 PRINTS PR00990 Ribokinase signature 6 27 6.9E-36 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RY45_11935 de8f1a42cfd1830ed29b912b40293f22 181 Pfam PF05433 Glycine zipper 2TM domain 73 113 1.1E-11 T 14-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 Gene3D G3DSA:3.40.50.12740 2 207 3.1E-53 T 14-10-2018 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 Pfam PF00072 Response regulator receiver domain 4 110 1.7E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 9.3E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 SMART SM00421 144 201 4.3E-21 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 SUPERFAMILY SSF52172 1 126 7.68E-33 T 14-10-2018 IPR011006 CheY-like superfamily RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 SMART SM00448 2 114 1.1E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 SUPERFAMILY SSF46894 141 206 6.46E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 4.8E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 4.8E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_00305 ffb4eceec02b8872e174025194c50cf5 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 4.8E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RY45_16625 5e82c9f7bb9037e3f22cb26bd0eb7bd8 168 Pfam PF05618 Putative ATP-dependant zinc protease 29 163 2.0E-37 T 14-10-2018 RY45_16625 5e82c9f7bb9037e3f22cb26bd0eb7bd8 168 Gene3D G3DSA:2.40.70.10 27 156 5.3E-39 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily RY45_16625 5e82c9f7bb9037e3f22cb26bd0eb7bd8 168 SUPERFAMILY SSF50630 29 163 1.13E-37 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily RY45_18735 3d10ffbf89898dd690b6f5bd81d98119 534 Gene3D G3DSA:3.10.105.10 288 503 5.1E-176 T 14-10-2018 RY45_18735 3d10ffbf89898dd690b6f5bd81d98119 534 SUPERFAMILY SSF53850 28 522 7.91E-135 T 14-10-2018 RY45_18735 3d10ffbf89898dd690b6f5bd81d98119 534 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 450 1.8E-81 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_18735 3d10ffbf89898dd690b6f5bd81d98119 534 Gene3D G3DSA:3.40.190.10 37 515 5.1E-176 T 14-10-2018 RY45_18735 3d10ffbf89898dd690b6f5bd81d98119 534 Gene3D G3DSA:3.90.76.10 63 186 5.1E-176 T 14-10-2018 RY45_18735 3d10ffbf89898dd690b6f5bd81d98119 534 PIRSF PIRSF002741 4 534 4.5E-104 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_22300 ceb659f4dec9f0266d74c4683bde7f01 315 Gene3D G3DSA:1.10.340.50 170 263 2.9E-39 T 14-10-2018 RY45_22300 ceb659f4dec9f0266d74c4683bde7f01 315 SUPERFAMILY SSF46894 281 312 2.99E-5 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RY45_22300 ceb659f4dec9f0266d74c4683bde7f01 315 Gene3D G3DSA:1.10.10.10 280 312 2.3E-5 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_22300 ceb659f4dec9f0266d74c4683bde7f01 315 SMART SM00942 166 240 6.4E-5 T 14-10-2018 IPR014820 Primase, C-terminal 1 RY45_22300 ceb659f4dec9f0266d74c4683bde7f01 315 Pfam PF08708 Primase C terminal 1 (PriCT-1) 171 239 4.8E-13 T 14-10-2018 IPR014820 Primase, C-terminal 1 RY45_22300 ceb659f4dec9f0266d74c4683bde7f01 315 Pfam PF03090 Replicase family 34 158 4.1E-44 T 14-10-2018 IPR004322 Plasmid replicase, bacterial RY45_08750 48c1cdf1b20721441b480c0c8986be62 382 Gene3D G3DSA:1.20.1250.20 3 188 2.5E-23 T 14-10-2018 RY45_08750 48c1cdf1b20721441b480c0c8986be62 382 Pfam PF07690 Major Facilitator Superfamily 11 282 2.8E-22 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_08750 48c1cdf1b20721441b480c0c8986be62 382 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 382 35.733 T 14-10-2018 IPR023745 MSF-type transporter, YcaD RY45_08750 48c1cdf1b20721441b480c0c8986be62 382 Gene3D G3DSA:1.20.1250.20 208 378 8.2E-21 T 14-10-2018 RY45_08750 48c1cdf1b20721441b480c0c8986be62 382 SUPERFAMILY SSF103473 6 372 3.4E-47 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_03895 be75fa5343ff7bf7802a750052557a9e 137 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 4.4E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_03895 be75fa5343ff7bf7802a750052557a9e 137 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 5 72 8.8E-19 T 14-10-2018 IPR013362 Pilus modification type IV, PilV RY45_03895 be75fa5343ff7bf7802a750052557a9e 137 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 25 4.9E-4 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site RY45_05485 aafd4dd3b559d850d96751f6cad1b56c 327 PIRSF PIRSF005211 1 326 2.5E-101 T 14-10-2018 IPR012020 AB hydrolase 4 family RY45_05485 aafd4dd3b559d850d96751f6cad1b56c 327 SUPERFAMILY SSF53474 22 319 4.65E-40 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_05485 aafd4dd3b559d850d96751f6cad1b56c 327 Pfam PF00561 alpha/beta hydrolase fold 60 300 7.9E-22 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_05485 aafd4dd3b559d850d96751f6cad1b56c 327 Gene3D G3DSA:3.40.50.1820 54 320 1.9E-28 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_05130 b476171c00760b5e58a7def065d52af5 294 SUPERFAMILY SSF117892 56 192 4.84E-26 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily RY45_05130 b476171c00760b5e58a7def065d52af5 294 Pfam PF01145 SPFH domain / Band 7 family 22 202 1.3E-30 T 14-10-2018 IPR001107 Band 7 domain RY45_05130 b476171c00760b5e58a7def065d52af5 294 TIGRFAM TIGR01932 hflC: HflC protein 157 287 3.1E-54 T 14-10-2018 IPR010200 HflC GO:0016021|GO:0052547 RY45_05130 b476171c00760b5e58a7def065d52af5 294 TIGRFAM TIGR01932 hflC: HflC protein 1 148 4.1E-57 T 14-10-2018 IPR010200 HflC GO:0016021|GO:0052547 RY45_05130 b476171c00760b5e58a7def065d52af5 294 Gene3D G3DSA:3.30.479.30 53 189 7.9E-21 T 14-10-2018 RY45_05130 b476171c00760b5e58a7def065d52af5 294 PIRSF PIRSF005651 1 294 8.6E-99 T 14-10-2018 IPR010200 HflC GO:0016021|GO:0052547 RY45_05130 b476171c00760b5e58a7def065d52af5 294 SMART SM00244 18 187 1.0E-43 T 14-10-2018 IPR001107 Band 7 domain RY45_13600 e006fef424b49971828f45538f52bc8a 112 PIRSF PIRSF028770 1 112 6.5E-57 T 14-10-2018 IPR011223 Uncharacterised conserved protein UCP028770 RY45_13600 e006fef424b49971828f45538f52bc8a 112 Pfam PF11742 Protein of unknown function (DUF3302) 3 78 2.5E-42 T 14-10-2018 IPR011223 Uncharacterised conserved protein UCP028770 RY45_11210 5415fb63ddb28f879746a969269931bd 238 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 11 235 37.055 T 14-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 RY45_11210 5415fb63ddb28f879746a969269931bd 238 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 11 229 1.4E-85 T 14-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 RY45_11210 5415fb63ddb28f879746a969269931bd 238 Pfam PF13489 Methyltransferase domain 52 201 4.6E-27 T 14-10-2018 RY45_11210 5415fb63ddb28f879746a969269931bd 238 Gene3D G3DSA:3.40.50.150 11 233 5.4E-78 T 14-10-2018 RY45_11210 5415fb63ddb28f879746a969269931bd 238 SUPERFAMILY SSF53335 15 233 8.28E-48 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_17405 38ff79b10e6bda832ea80c59b888c3e8 155 Pfam PF12821 Threonine/Serine exporter, ThrE 12 146 2.2E-37 T 14-10-2018 IPR024528 Threonine/Serine exporter, ThrE RY45_10305 34c768efc8b22493af225d4be12cca50 108 Pfam PF14302 Domain of unknown function (DUF4377) 30 104 8.3E-31 T 14-10-2018 IPR025485 Domain of unknown function DUF4377 RY45_02325 40d3d0c772ae7f8f4566d020885510c7 106 Pfam PF07876 Stress responsive A/B Barrel Domain 2 97 9.5E-27 T 14-10-2018 IPR013097 Stress responsive alpha-beta barrel RY45_02325 40d3d0c772ae7f8f4566d020885510c7 106 SMART SM00886 2 98 1.6E-33 T 14-10-2018 IPR013097 Stress responsive alpha-beta barrel RY45_02325 40d3d0c772ae7f8f4566d020885510c7 106 Gene3D G3DSA:3.30.70.100 1 100 5.5E-33 T 14-10-2018 RY45_02325 40d3d0c772ae7f8f4566d020885510c7 106 SUPERFAMILY SSF54909 2 99 1.79E-28 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_12815 7dc6adbbc72174015e8ec41d527666aa 409 Pfam PF07690 Major Facilitator Superfamily 15 264 3.9E-28 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_12815 7dc6adbbc72174015e8ec41d527666aa 409 SUPERFAMILY SSF103473 10 392 7.06E-52 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_12815 7dc6adbbc72174015e8ec41d527666aa 409 Gene3D G3DSA:1.20.1250.20 8 388 2.5E-43 T 14-10-2018 RY45_13495 a5e75043aa3eaecdfa3060ddf5b090bf 670 Gene3D G3DSA:1.10.287.950 339 669 6.2E-74 T 14-10-2018 RY45_13495 a5e75043aa3eaecdfa3060ddf5b090bf 670 SMART SM00304 339 391 3.4E-4 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_13495 a5e75043aa3eaecdfa3060ddf5b090bf 670 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 463 634 3.5E-43 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_13495 a5e75043aa3eaecdfa3060ddf5b090bf 670 Pfam PF00672 HAMP domain 340 384 4.1E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RY45_13495 a5e75043aa3eaecdfa3060ddf5b090bf 670 SUPERFAMILY SSF58104 359 668 3.01E-75 T 14-10-2018 RY45_13495 a5e75043aa3eaecdfa3060ddf5b090bf 670 SMART SM00283 406 667 2.6E-72 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05695 4638ba7a173542996b16b88696ba8eab 202 Pfam PF01810 LysE type translocator 15 201 6.5E-32 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_05695 4638ba7a173542996b16b88696ba8eab 202 PIRSF PIRSF006324 1 202 4.9E-44 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_18420 c9a686d8181ac8cee6fb3b67435c887d 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 1.4E-32 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family RY45_18420 c9a686d8181ac8cee6fb3b67435c887d 156 Pfam PF04074 Domain of unknown function (DUF386) 1 149 3.8E-37 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family RY45_18420 c9a686d8181ac8cee6fb3b67435c887d 156 Gene3D G3DSA:2.60.120.370 1 153 2.2E-33 T 14-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily RY45_18420 c9a686d8181ac8cee6fb3b67435c887d 156 SUPERFAMILY SSF51197 1 153 3.57E-35 T 14-10-2018 RY45_04050 b126b03c8236205ffd14dfb1ade286b2 145 Pfam PF09335 SNARE associated Golgi protein 29 139 4.7E-8 T 14-10-2018 IPR032816 SNARE associated Golgi protein RY45_04050 b126b03c8236205ffd14dfb1ade286b2 145 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 12 117 7.0E-6 T 14-10-2018 IPR020143 Uncharacterised protein family, RP436 RY45_02790 1491e84c0ce9d4b41a1ee95424d3ad36 85 SUPERFAMILY SSF143880 2 76 2.35E-12 T 14-10-2018 IPR036782 NE0471-like, N-terminal RY45_02790 1491e84c0ce9d4b41a1ee95424d3ad36 85 Pfam PF10387 Protein of unknown function (DUF2442) 5 76 1.6E-8 T 14-10-2018 IPR018841 Protein of unknown function DUF2442 RY45_05595 dbf257f91851cb5dfc4e26d62881507d 814 Pfam PF15976 CS1-pili formation C-terminal 712 807 8.8E-27 T 14-10-2018 IPR031917 Pilus assembly protein, C-terminal domain RY45_05595 dbf257f91851cb5dfc4e26d62881507d 814 Pfam PF16967 E-set like domain 267 334 7.5E-25 T 14-10-2018 IPR032636 Pilus assembly protein, E-set like domain RY45_16120 34ef190ba82d83c63cbe8f9748a651e2 227 SUPERFAMILY SSF54060 19 226 4.71E-85 T 14-10-2018 RY45_16120 34ef190ba82d83c63cbe8f9748a651e2 227 Pfam PF04231 Endonuclease I 27 224 1.3E-41 T 14-10-2018 IPR007346 Endonuclease I GO:0004518 RY45_11170 3759ee95ddaf36e27f70e80391fa6122 272 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 8 272 1.1E-89 T 14-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 RY45_12320 8ec854dc0eea7801d3c0d068be6e4bea 329 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 11 301 1.9E-74 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RY45_12320 8ec854dc0eea7801d3c0d068be6e4bea 329 PIRSF PIRSF026649 7 311 1.8E-99 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RY45_12320 8ec854dc0eea7801d3c0d068be6e4bea 329 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 8 306 1.5E-104 T 14-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 RY45_12320 8ec854dc0eea7801d3c0d068be6e4bea 329 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 2 308 47.695 T 14-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 RY45_12430 5c0bfdcaeeba9a164b75305ab594079a 151 Gene3D G3DSA:3.30.420.10 3 150 6.4E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_12430 5c0bfdcaeeba9a164b75305ab594079a 151 SUPERFAMILY SSF53098 4 146 8.47E-30 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_12430 5c0bfdcaeeba9a164b75305ab594079a 151 Pfam PF00665 Integrase core domain 4 98 2.1E-19 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RY45_09310 521670be6fe7d39d8bda3887a5cbb4cc 695 Pfam PF01973 Protein of unknown function DUF115 299 455 8.4E-30 T 14-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like RY45_20595 7b42abef0c5a5422aa53a89b4b2e1a80 105 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 12 99 6.0E-37 T 14-10-2018 IPR007458 Protein of unknown function DUF496 RY45_20595 7b42abef0c5a5422aa53a89b4b2e1a80 105 PIRSF PIRSF028773 1 105 9.1E-48 T 14-10-2018 IPR007458 Protein of unknown function DUF496 RY45_20595 7b42abef0c5a5422aa53a89b4b2e1a80 105 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 24.604 T 14-10-2018 IPR007458 Protein of unknown function DUF496 RY45_20595 7b42abef0c5a5422aa53a89b4b2e1a80 105 Pfam PF04363 Protein of unknown function (DUF496) 9 100 2.2E-44 T 14-10-2018 IPR007458 Protein of unknown function DUF496 RY45_20785 757b81ef9d6a5a3078087cb53433ea08 130 Pfam PF07681 DoxX 8 87 4.6E-17 T 14-10-2018 IPR032808 DoxX family RY45_04990 c2380d7710a4a57fb20428129f3c2f51 200 SUPERFAMILY SSF51735 1 200 1.49E-30 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_04990 c2380d7710a4a57fb20428129f3c2f51 200 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 34 168 3.6E-16 T 14-10-2018 RY45_04990 c2380d7710a4a57fb20428129f3c2f51 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.0E-6 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04990 c2380d7710a4a57fb20428129f3c2f51 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 144 1.0E-6 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04990 c2380d7710a4a57fb20428129f3c2f51 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 54 65 1.0E-6 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04990 c2380d7710a4a57fb20428129f3c2f51 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 162 1.0E-6 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_04990 c2380d7710a4a57fb20428129f3c2f51 200 Gene3D G3DSA:3.40.50.720 1 199 2.3E-45 T 14-10-2018 RY45_11010 0eb352eb7eda126f68eaca10102b2b6d 161 Gene3D G3DSA:3.40.630.30 14 156 2.2E-23 T 14-10-2018 RY45_11010 0eb352eb7eda126f68eaca10102b2b6d 161 Pfam PF00583 Acetyltransferase (GNAT) family 40 138 1.1E-12 T 14-10-2018 IPR000182 GNAT domain RY45_11010 0eb352eb7eda126f68eaca10102b2b6d 161 SUPERFAMILY SSF55729 9 149 1.35E-23 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_21990 ef574db4d8e12a9140f0f45e51bb04ad 151 PRINTS PR00607 Class IE cytochrome C signature 122 134 5.0E-13 T 14-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RY45_21990 ef574db4d8e12a9140f0f45e51bb04ad 151 PRINTS PR00607 Class IE cytochrome C signature 137 148 5.0E-13 T 14-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RY45_21990 ef574db4d8e12a9140f0f45e51bb04ad 151 PRINTS PR00607 Class IE cytochrome C signature 79 90 5.0E-13 T 14-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RY45_21990 ef574db4d8e12a9140f0f45e51bb04ad 151 PRINTS PR00607 Class IE cytochrome C signature 90 100 5.0E-13 T 14-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RY45_21990 ef574db4d8e12a9140f0f45e51bb04ad 151 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 69 147 4.1E-15 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_21990 ef574db4d8e12a9140f0f45e51bb04ad 151 SUPERFAMILY SSF46626 69 149 1.75E-18 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_21990 ef574db4d8e12a9140f0f45e51bb04ad 151 Gene3D G3DSA:1.10.760.10 65 151 7.1E-33 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 617 632 3.5E-62 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 561 581 3.5E-62 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 531 550 3.5E-62 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 636 658 3.5E-62 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 503 527 3.5E-62 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 477 495 3.5E-62 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 538 568 - T 14-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 SUPERFAMILY SSF50993 30 441 1.02E-100 T 14-10-2018 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 Gene3D G3DSA:2.130.10.120 101 437 5.5E-276 T 14-10-2018 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 Gene3D G3DSA:3.40.50.1820 43 676 5.5E-276 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 SUPERFAMILY SSF53474 446 686 6.08E-46 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 35 434 1.1E-144 T 14-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RY45_04335 d6578eb5d55d8cb019ac4ed32daae348 715 Pfam PF00326 Prolyl oligopeptidase family 492 706 4.0E-66 T 14-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RY45_17660 42c4f40543743d81351eea81f441836e 345 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 159 340 3.9E-26 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_17660 42c4f40543743d81351eea81f441836e 345 Gene3D G3DSA:1.10.3720.10 131 337 6.8E-16 T 14-10-2018 IPR035906 MetI-like superfamily RY45_17660 42c4f40543743d81351eea81f441836e 345 SUPERFAMILY SSF161098 136 323 1.57E-17 T 14-10-2018 IPR035906 MetI-like superfamily RY45_19850 04d6856ea2600a28fd7961713316c255 171 Pfam PF08020 Protein of unknown function (DUF1706) 1 165 1.8E-51 T 14-10-2018 IPR012550 Protein of unknown function DUF1706 RY45_19850 04d6856ea2600a28fd7961713316c255 171 PIRSF PIRSF031551 1 170 3.7E-51 T 14-10-2018 IPR012550 Protein of unknown function DUF1706 RY45_19850 04d6856ea2600a28fd7961713316c255 171 Gene3D G3DSA:1.20.120.450 1 167 2.3E-59 T 14-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RY45_19850 04d6856ea2600a28fd7961713316c255 171 SUPERFAMILY SSF109854 7 147 3.2E-6 T 14-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RY45_02450 83d51ef5c2b98a0b07a517b9d4009265 425 Pfam PF00999 Sodium/hydrogen exchanger family 31 415 2.1E-56 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RY45_17060 094d798593771954881d484094cfa121 108 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.0E-42 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RY45_17060 094d798593771954881d484094cfa121 108 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.0E-42 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RY45_17060 094d798593771954881d484094cfa121 108 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.0E-42 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RY45_17060 094d798593771954881d484094cfa121 108 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.0E-42 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RY45_17060 094d798593771954881d484094cfa121 108 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 72 7.5E-26 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RY45_17060 094d798593771954881d484094cfa121 108 Pfam PF03840 Preprotein translocase SecG subunit 4 71 6.8E-22 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RY45_06200 7f954dea820e3ee68af35112c542bf38 539 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 380 537 7.7E-46 T 14-10-2018 IPR000160 GGDEF domain RY45_06200 7f954dea820e3ee68af35112c542bf38 539 Gene3D G3DSA:3.30.70.270 375 539 4.3E-54 T 14-10-2018 RY45_06200 7f954dea820e3ee68af35112c542bf38 539 Pfam PF00990 Diguanylate cyclase, GGDEF domain 381 535 4.2E-44 T 14-10-2018 IPR000160 GGDEF domain RY45_06200 7f954dea820e3ee68af35112c542bf38 539 SUPERFAMILY SSF55073 384 537 4.0E-48 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_06200 7f954dea820e3ee68af35112c542bf38 539 SMART SM00267 369 539 9.9E-55 T 14-10-2018 IPR000160 GGDEF domain RY45_17990 94b7ca8ca066fcd1f4834160cd7d33a9 303 Gene3D G3DSA:3.90.550.10 5 302 5.8E-89 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_17990 94b7ca8ca066fcd1f4834160cd7d33a9 303 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 8 277 9.0E-115 T 14-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 RY45_17990 94b7ca8ca066fcd1f4834160cd7d33a9 303 SUPERFAMILY SSF53448 9 290 1.94E-61 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_17990 94b7ca8ca066fcd1f4834160cd7d33a9 303 Pfam PF00483 Nucleotidyl transferase 11 281 2.7E-25 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RY45_13055 7ee1919e409920a21e0a823e9c0e5e88 373 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 165 372 2.0E-91 T 14-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 RY45_13055 7ee1919e409920a21e0a823e9c0e5e88 373 Gene3D G3DSA:3.40.50.300 172 373 5.8E-64 T 14-10-2018 RY45_13055 7ee1919e409920a21e0a823e9c0e5e88 373 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 192 354 5.4E-38 T 14-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RY45_13055 7ee1919e409920a21e0a823e9c0e5e88 373 SUPERFAMILY SSF52540 169 372 4.65E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_05300 b8fee41f12ee531807f85e9de3e922d2 419 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 7 80 9.7E-23 T 14-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 RY45_05300 b8fee41f12ee531807f85e9de3e922d2 419 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 196 415 3.3E-67 T 14-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 RY45_05300 b8fee41f12ee531807f85e9de3e922d2 419 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 415 4.1E-139 T 14-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 RY45_05300 b8fee41f12ee531807f85e9de3e922d2 419 Pfam PF07670 Nucleoside recognition 94 189 1.3E-7 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RY45_17190 9116be90004e2189fa9e0cbf23c0c2c2 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 90.653 T 14-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RY45_17190 9116be90004e2189fa9e0cbf23c0c2c2 149 Pfam PF03477 ATP cone domain 50 136 4.1E-17 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RY45_17190 9116be90004e2189fa9e0cbf23c0c2c2 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 2.6E-74 T 14-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RY45_10800 c170faefc622c06f3c161da42d3f99db 110 SUPERFAMILY SSF54909 1 96 6.6E-28 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_10800 c170faefc622c06f3c161da42d3f99db 110 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 1.5E-12 T 14-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RY45_10800 c170faefc622c06f3c161da42d3f99db 110 Gene3D G3DSA:3.30.70.100 1 96 6.8E-36 T 14-10-2018 RY45_02100 5006d6b68fc474df77dddfa58c48e08f 100 Pfam PF04175 Protein of unknown function (DUF406) 10 98 6.5E-29 T 14-10-2018 IPR005272 Conserved hypothetical protein CHP00743 RY45_02100 5006d6b68fc474df77dddfa58c48e08f 100 Gene3D G3DSA:3.30.70.860 1 100 2.3E-32 T 14-10-2018 IPR035571 UPF0234-like, C-terminal RY45_03930 c35ae2ce2e3308c9a9919527a8cdf678 195 PIRSF PIRSF004525 1 194 2.1E-13 T 14-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted RY45_04485 18165a9fdcbbbb173a952998774ef44b 153 PIRSF PIRSF004923 1 153 7.1E-50 T 14-10-2018 IPR026268 Protein RseC RY45_04485 18165a9fdcbbbb173a952998774ef44b 153 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 142 4.5E-35 T 14-10-2018 RY45_07250 3fb8843bbb741b7ef1cdbdbd9fa17c92 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 6.0E-12 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_07250 3fb8843bbb741b7ef1cdbdbd9fa17c92 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 6.0E-12 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_07250 3fb8843bbb741b7ef1cdbdbd9fa17c92 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 6.0E-12 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_07250 3fb8843bbb741b7ef1cdbdbd9fa17c92 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 3.0E-26 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_07250 3fb8843bbb741b7ef1cdbdbd9fa17c92 89 PIRSF PIRSF004669 1 89 1.2E-24 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RY45_07250 3fb8843bbb741b7ef1cdbdbd9fa17c92 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 3.7E-27 T 14-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 RY45_19805 b9d867d2546f0db5761c8bf6f2563bf6 152 Gene3D G3DSA:3.40.50.1380 1 152 3.2E-62 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RY45_19805 b9d867d2546f0db5761c8bf6f2563bf6 152 SMART SM00851 25 118 9.5E-19 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain RY45_19805 b9d867d2546f0db5761c8bf6f2563bf6 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 14-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 RY45_19805 b9d867d2546f0db5761c8bf6f2563bf6 152 SUPERFAMILY SSF52335 6 147 2.44E-54 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RY45_19805 b9d867d2546f0db5761c8bf6f2563bf6 152 Pfam PF02142 MGS-like domain 34 118 8.2E-17 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain RY45_19805 b9d867d2546f0db5761c8bf6f2563bf6 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 31.525 T 14-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 RY45_19805 b9d867d2546f0db5761c8bf6f2563bf6 152 PIRSF PIRSF006614 8 151 7.2E-62 T 14-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 RY45_19805 b9d867d2546f0db5761c8bf6f2563bf6 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 5.4E-61 T 14-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 SUPERFAMILY SSF46689 144 194 8.06E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 SUPERFAMILY SSF46689 196 246 2.46E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 Pfam PF02311 AraC-like ligand binding domain 25 109 5.1E-6 T 14-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 197 239 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 Gene3D G3DSA:2.60.120.10 20 80 1.5E-7 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 Gene3D G3DSA:1.10.10.60 145 248 4.1E-27 T 14-10-2018 RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 SUPERFAMILY SSF51215 26 87 9.94E-8 T 14-10-2018 IPR037923 Transcription regulator HTH-like RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 SMART SM00342 160 243 5.9E-24 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_03375 8b467cd1b0aacc65fde3e7fc708bc52d 250 Pfam PF12833 Helix-turn-helix domain 166 244 1.5E-20 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RY45_11970 e52d5c0fb7090861b0a6a2d1a82f3f2e 508 Pfam PF00860 Permease family 23 414 3.3E-100 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RY45_11970 e52d5c0fb7090861b0a6a2d1a82f3f2e 508 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 19 445 3.8E-127 T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RY45_11970 e52d5c0fb7090861b0a6a2d1a82f3f2e 508 TIGRFAM TIGR03173 pbuX: xanthine permease 28 447 9.4E-130 T 14-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 RY45_11970 e52d5c0fb7090861b0a6a2d1a82f3f2e 508 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 363 383 - T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RY45_01680 98354fb4d83232d81fb775aebdb75f29 290 Pfam PF03631 Virulence factor BrkB 32 278 4.6E-58 T 14-10-2018 IPR017039 Virulence factor BrkB RY45_01680 98354fb4d83232d81fb775aebdb75f29 290 PIRSF PIRSF035875 11 289 2.5E-58 T 14-10-2018 IPR017039 Virulence factor BrkB RY45_01680 98354fb4d83232d81fb775aebdb75f29 290 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 23 281 9.1E-87 T 14-10-2018 IPR017039 Virulence factor BrkB RY45_01680 98354fb4d83232d81fb775aebdb75f29 290 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 13 290 24.381 T 14-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 7.0E-82 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 SUPERFAMILY SSF53748 3 383 7.66E-144 T 14-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.561 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 PIRSF PIRSF000724 1 387 6.8E-134 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 Gene3D G3DSA:3.40.50.1260 10 379 2.7E-152 T 14-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 Pfam PF00162 Phosphoglycerate kinase 6 373 6.7E-138 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 14-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_04405 76a29ae033ebbcdfc87f3c59d84b94e6 387 Gene3D G3DSA:3.40.50.1260 165 373 2.7E-152 T 14-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_17580 8536567313c2a78453c5d59ae2967b7a 194 SMART SM01012 134 189 3.5E-19 T 14-10-2018 IPR005561 ANTAR domain GO:0003723 RY45_17580 8536567313c2a78453c5d59ae2967b7a 194 Pfam PF03861 ANTAR domain 137 189 4.3E-17 T 14-10-2018 IPR005561 ANTAR domain GO:0003723 RY45_17580 8536567313c2a78453c5d59ae2967b7a 194 Gene3D G3DSA:1.10.10.10 136 193 5.3E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_17580 8536567313c2a78453c5d59ae2967b7a 194 SUPERFAMILY SSF52172 15 189 8.7E-21 T 14-10-2018 IPR011006 CheY-like superfamily RY45_07290 c114fdad1249d1d9039e71a26ab50ba6 246 SUPERFAMILY SSF75708 33 245 4.05E-67 T 14-10-2018 RY45_07290 c114fdad1249d1d9039e71a26ab50ba6 246 PIRSF PIRSF002884 20 246 4.3E-84 T 14-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 RY45_07290 c114fdad1249d1d9039e71a26ab50ba6 246 Pfam PF04344 Chemotaxis phosphatase, CheZ 43 246 3.5E-78 T 14-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 RY45_07290 c114fdad1249d1d9039e71a26ab50ba6 246 Gene3D G3DSA:1.10.287.500 62 196 7.0E-47 T 14-10-2018 RY45_17510 e24349ce6964dd6d3256c378aa19df70 237 SUPERFAMILY SSF53901 28 158 1.15E-6 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 RY45_17510 e24349ce6964dd6d3256c378aa19df70 237 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 22 235 3.1E-70 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RY45_05920 49003b4c3976162060fa3575349f98d0 185 Pfam PF12915 Protein of unknown function (DUF3833) 21 182 1.2E-63 T 14-10-2018 IPR024409 Protein of unknown function DUF3833 RY45_18520 4dba25b6f298736a3302b9c4fe892d87 105 SUPERFAMILY SSF101756 31 101 3.66E-8 T 14-10-2018 IPR036700 Bacterial OB-fold superfamily RY45_18520 4dba25b6f298736a3302b9c4fe892d87 105 Gene3D G3DSA:2.40.50.200 17 105 2.3E-5 T 14-10-2018 IPR036700 Bacterial OB-fold superfamily RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 Gene3D G3DSA:3.40.50.720 2 250 6.7E-70 T 14-10-2018 RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 SUPERFAMILY SSF51735 11 247 2.5E-60 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 Pfam PF00106 short chain dehydrogenase 14 213 3.6E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 1.9E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 1.9E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 1.9E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 1.9E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.9E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_16025 a2e9efdb0f301cf0f1cf4b2ec9c00bc7 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 157 185 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_03015 45d67b03cdfd4a3c0f2d2a0de70294df 141 SUPERFAMILY SSF48452 8 75 2.4E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_03015 45d67b03cdfd4a3c0f2d2a0de70294df 141 Gene3D G3DSA:1.25.40.10 7 137 3.2E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_05760 bb1137aa9153742bab815631a05c7389 481 Gene3D G3DSA:2.40.160.10 47 463 2.1E-29 T 14-10-2018 IPR023614 Porin domain superfamily RY45_05760 bb1137aa9153742bab815631a05c7389 481 Pfam PF03573 outer membrane porin, OprD family 52 451 1.3E-23 T 14-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 RY45_12760 473ece63bf5017972d0bb87744980b8e 456 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 20 433 8.7E-164 T 14-10-2018 IPR026332 Putative heme utilization radical SAM enzyme HutW RY45_12760 473ece63bf5017972d0bb87744980b8e 456 SMART SM00729 57 279 3.3E-33 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RY45_12760 473ece63bf5017972d0bb87744980b8e 456 SUPERFAMILY SSF102114 51 432 1.83E-71 T 14-10-2018 RY45_12760 473ece63bf5017972d0bb87744980b8e 456 Gene3D G3DSA:3.80.30.20 30 356 8.0E-69 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RY45_12760 473ece63bf5017972d0bb87744980b8e 456 Pfam PF04055 Radical SAM superfamily 62 227 1.7E-11 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RY45_21120 7876de49ab6a9e5c108ab1efd8c0ddc2 451 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 45 423 3.6E-115 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 RY45_21120 7876de49ab6a9e5c108ab1efd8c0ddc2 451 Pfam PF02386 Cation transport protein 47 439 3.8E-59 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RY45_11800 a4f1e7c617aac15abe0f0ed3b977a102 125 PIRSF PIRSF016789 2 123 7.1E-41 T 14-10-2018 IPR007401 Protein of unknown function DUF454 RY45_11800 a4f1e7c617aac15abe0f0ed3b977a102 125 Pfam PF04304 Protein of unknown function (DUF454) 3 116 5.6E-39 T 14-10-2018 IPR007401 Protein of unknown function DUF454 RY45_07325 d976354cd3995f8aeab8ece2f3e4ffbf 162 Pfam PF01584 CheW-like domain 18 154 5.2E-40 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_07325 d976354cd3995f8aeab8ece2f3e4ffbf 162 Gene3D G3DSA:2.30.30.40 20 145 2.5E-43 T 14-10-2018 RY45_07325 d976354cd3995f8aeab8ece2f3e4ffbf 162 SUPERFAMILY SSF50341 14 157 7.06E-42 T 14-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RY45_07325 d976354cd3995f8aeab8ece2f3e4ffbf 162 SMART SM00260 14 151 6.4E-49 T 14-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RY45_07325 d976354cd3995f8aeab8ece2f3e4ffbf 162 Gene3D G3DSA:2.40.50.180 37 146 2.5E-43 T 14-10-2018 RY45_03330 137856c3650f7952d4ba6bebd5336708 163 Gene3D G3DSA:3.30.1360.100 84 163 3.4E-26 T 14-10-2018 RY45_03330 137856c3650f7952d4ba6bebd5336708 163 SUPERFAMILY SSF103054 84 161 7.32E-20 T 14-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily RY45_03330 137856c3650f7952d4ba6bebd5336708 163 Pfam PF04612 Type II secretion system (T2SS), protein M 2 161 4.5E-51 T 14-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 RY45_03330 137856c3650f7952d4ba6bebd5336708 163 PIRSF PIRSF006291 1 161 5.3E-47 T 14-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 RY45_21705 207eb08c08fe8dc464422a5ccde2479e 431 Pfam PF01973 Protein of unknown function DUF115 196 354 6.4E-34 T 14-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like RY45_07040 efd80afcd2cbeacdd4ff035058070091 268 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 20 241 6.1E-43 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_07040 efd80afcd2cbeacdd4ff035058070091 268 Gene3D G3DSA:3.40.140.10 130 259 1.4E-31 T 14-10-2018 RY45_07040 efd80afcd2cbeacdd4ff035058070091 268 Pfam PF02634 FdhD/NarQ family 23 253 8.5E-58 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_07040 efd80afcd2cbeacdd4ff035058070091 268 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 1 259 25.814 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_07040 efd80afcd2cbeacdd4ff035058070091 268 PIRSF PIRSF015626 12 258 1.1E-56 T 14-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RY45_07040 efd80afcd2cbeacdd4ff035058070091 268 SUPERFAMILY SSF53927 16 254 2.41E-62 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RY45_07040 efd80afcd2cbeacdd4ff035058070091 268 Gene3D G3DSA:3.10.20.10 25 110 1.4E-14 T 14-10-2018 RY45_21545 137a2f81f4b3039801858d64de9155f9 236 Pfam PF03473 MOSC domain 44 162 7.7E-20 T 14-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RY45_21545 137a2f81f4b3039801858d64de9155f9 236 SUPERFAMILY SSF50800 3 228 1.36E-66 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RY45_21545 137a2f81f4b3039801858d64de9155f9 236 Gene3D G3DSA:2.40.33.20 1 233 7.7E-70 T 14-10-2018 RY45_21545 137a2f81f4b3039801858d64de9155f9 236 Pfam PF03475 3-alpha domain 174 216 3.7E-11 T 14-10-2018 IPR005163 3-alpha domain RY45_01370 cfef2140a66eac253ec626af156798d2 371 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 342 1.2E-36 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RY45_06610 57b7d431a2e18ce992f40312c552b5af 342 Pfam PF13515 Fusaric acid resistance protein-like 191 323 3.9E-7 T 14-10-2018 RY45_06610 57b7d431a2e18ce992f40312c552b5af 342 PIRSF PIRSF029594 8 342 4.5E-142 T 14-10-2018 IPR016926 Uncharacterised conserved protein UCP029594 RY45_06610 57b7d431a2e18ce992f40312c552b5af 342 Pfam PF11168 Protein of unknown function (DUF2955) 15 154 4.5E-51 T 14-10-2018 IPR022604 Protein of unknown function DUF2955 RY45_21550 d4c54ca7d7bd20cfdf292a885494cca4 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 255 1.0E-14 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_21550 d4c54ca7d7bd20cfdf292a885494cca4 280 SUPERFAMILY SSF161098 3 261 3.83E-50 T 14-10-2018 IPR035906 MetI-like superfamily RY45_21550 d4c54ca7d7bd20cfdf292a885494cca4 280 Gene3D G3DSA:1.10.3720.10 4 265 5.0E-45 T 14-10-2018 IPR035906 MetI-like superfamily RY45_18545 04f6a67e343c1e2238bc45484c1bda40 147 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RY45_18545 04f6a67e343c1e2238bc45484c1bda40 147 Pfam PF00293 NUDIX domain 7 127 1.3E-25 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_18545 04f6a67e343c1e2238bc45484c1bda40 147 PRINTS PR00502 NUDIX hydrolase family signature 34 48 5.5E-7 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_18545 04f6a67e343c1e2238bc45484c1bda40 147 PRINTS PR00502 NUDIX hydrolase family signature 48 63 5.5E-7 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RY45_18545 04f6a67e343c1e2238bc45484c1bda40 147 SUPERFAMILY SSF55811 4 137 8.12E-32 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_18545 04f6a67e343c1e2238bc45484c1bda40 147 Gene3D G3DSA:3.90.79.10 1 131 4.7E-38 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 Gene3D G3DSA:2.60.40.2540 20 172 1.6E-50 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 Pfam PF00691 OmpA family 183 279 7.6E-18 T 14-10-2018 IPR006665 OmpA-like domain RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 230 247 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 42 60 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 248 267 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 101 118 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 120 142 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 63 81 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 171 198 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 201 227 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 25 41 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 82 100 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 268 288 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 145 164 2.0E-70 T 14-10-2018 RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 SUPERFAMILY SSF103088 161 283 7.59E-26 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_13700 f443c63c9040a0b9556301e6ea686bdc 291 Gene3D G3DSA:3.30.1330.60 173 289 2.7E-33 T 14-10-2018 IPR036737 OmpA-like domain superfamily RY45_16920 8852690866f5e05d19d2993b6041ae7f 427 Gene3D G3DSA:3.40.50.2000 1 247 1.1E-33 T 14-10-2018 RY45_16920 8852690866f5e05d19d2993b6041ae7f 427 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 257 399 1.8E-8 T 14-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RY45_16920 8852690866f5e05d19d2993b6041ae7f 427 Gene3D G3DSA:3.40.50.2000 248 408 7.4E-43 T 14-10-2018 RY45_16920 8852690866f5e05d19d2993b6041ae7f 427 SUPERFAMILY SSF53756 1 422 2.51E-69 T 14-10-2018 RY45_22185 61e91d5c53d28f9f23c1f3f57fa4ea21 149 PRINTS PR00369 Flavodoxin signature 53 64 4.1E-8 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_22185 61e91d5c53d28f9f23c1f3f57fa4ea21 149 PRINTS PR00369 Flavodoxin signature 108 127 4.1E-8 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_22185 61e91d5c53d28f9f23c1f3f57fa4ea21 149 PRINTS PR00369 Flavodoxin signature 84 94 4.1E-8 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_22185 61e91d5c53d28f9f23c1f3f57fa4ea21 149 PRINTS PR00369 Flavodoxin signature 5 18 4.1E-8 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_22185 61e91d5c53d28f9f23c1f3f57fa4ea21 149 SUPERFAMILY SSF52218 1 148 2.48E-44 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_22185 61e91d5c53d28f9f23c1f3f57fa4ea21 149 Gene3D G3DSA:3.40.50.360 1 149 9.6E-51 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_22185 61e91d5c53d28f9f23c1f3f57fa4ea21 149 Pfam PF00258 Flavodoxin 7 140 3.3E-27 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RY45_09445 0eca9d44800d0a12916a6bea554ef271 430 SUPERFAMILY SSF103473 13 384 6.8E-36 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_09445 0eca9d44800d0a12916a6bea554ef271 430 Gene3D G3DSA:1.20.1250.20 201 379 1.8E-20 T 14-10-2018 RY45_09445 0eca9d44800d0a12916a6bea554ef271 430 Pfam PF07690 Major Facilitator Superfamily 204 370 2.2E-16 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_09445 0eca9d44800d0a12916a6bea554ef271 430 Gene3D G3DSA:1.20.1250.20 6 181 3.6E-8 T 14-10-2018 RY45_08090 12e8c223421022bf706983ee69eccdcb 447 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 379 4.1E-149 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 RY45_08090 12e8c223421022bf706983ee69eccdcb 447 PIRSF PIRSF004539 1 447 3.2E-185 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 RY45_08090 12e8c223421022bf706983ee69eccdcb 447 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 447 4.1E-158 T 14-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 RY45_21035 02f2f9ef79cce84ed435d56fe0ee9cb2 238 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 26 139 6.0E-37 T 14-10-2018 IPR013559 YheO-like RY45_21035 02f2f9ef79cce84ed435d56fe0ee9cb2 238 Pfam PF08348 YheO-like PAS domain 28 136 5.8E-37 T 14-10-2018 IPR013559 YheO-like RY45_21035 02f2f9ef79cce84ed435d56fe0ee9cb2 238 Pfam PF13309 HTH domain 171 228 1.4E-17 T 14-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain RY45_16760 460568a85654a70a4bc9917f22da6e94 214 Gene3D G3DSA:3.40.50.620 5 213 7.5E-63 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RY45_16760 460568a85654a70a4bc9917f22da6e94 214 Pfam PF01467 Cytidylyltransferase-like 8 185 2.2E-28 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RY45_16760 460568a85654a70a4bc9917f22da6e94 214 SUPERFAMILY SSF52374 4 213 1.16E-54 T 14-10-2018 RY45_16760 460568a85654a70a4bc9917f22da6e94 214 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 8 211 3.2E-50 T 14-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RY45_16760 460568a85654a70a4bc9917f22da6e94 214 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 6 66 3.7E-8 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RY45_16760 460568a85654a70a4bc9917f22da6e94 214 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 4 212 30.915 T 14-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RY45_21170 043602bfefb8e553cd10cb6fa61bbb3b 333 Gene3D G3DSA:3.90.420.10 67 333 9.0E-110 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RY45_21170 043602bfefb8e553cd10cb6fa61bbb3b 333 Pfam PF00174 Oxidoreductase molybdopterin binding domain 107 266 1.9E-28 T 14-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 RY45_21170 043602bfefb8e553cd10cb6fa61bbb3b 333 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 9 333 54.549 T 14-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 RY45_21170 043602bfefb8e553cd10cb6fa61bbb3b 333 SUPERFAMILY SSF56524 76 329 1.83E-91 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RY45_15435 6e1f7176d85d53d814b64e4393c79c96 136 SMART SM00528 90 136 5.9E-19 T 14-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RY45_15435 6e1f7176d85d53d814b64e4393c79c96 136 Gene3D G3DSA:1.10.287.1050 1 83 1.3E-29 T 14-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 RY45_15435 6e1f7176d85d53d814b64e4393c79c96 136 PIRSF PIRSF002096 1 136 4.8E-53 T 14-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RY45_15435 6e1f7176d85d53d814b64e4393c79c96 136 SUPERFAMILY SSF81273 94 136 7.45E-10 T 14-10-2018 RY45_15435 6e1f7176d85d53d814b64e4393c79c96 136 SUPERFAMILY SSF81273 2 58 6.08E-16 T 14-10-2018 RY45_15435 6e1f7176d85d53d814b64e4393c79c96 136 Gene3D G3DSA:4.10.430.10 94 136 5.2E-20 T 14-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 RY45_15435 6e1f7176d85d53d814b64e4393c79c96 136 Pfam PF00816 H-NS histone family 45 129 1.9E-16 T 14-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RY45_03140 40142aa01e31e89039a9375ca96fbfa9 166 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 162 4.2E-33 T 14-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase RY45_03140 40142aa01e31e89039a9375ca96fbfa9 166 PIRSF PIRSF030780 1 165 1.9E-56 T 14-10-2018 IPR016956 Inner membrane protein YdjM RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 242 273 1.1E-9 T 14-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 Gene3D G3DSA:2.40.30.10 24 108 7.2E-9 T 14-10-2018 RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 PIRSF PIRSF006816 20 279 7.0E-70 T 14-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 Gene3D G3DSA:3.40.50.80 111 242 1.7E-18 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 PRINTS PR00410 Phenol hydroxylase reductase family signature 121 140 1.7E-6 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 PRINTS PR00410 Phenol hydroxylase reductase family signature 49 61 1.7E-6 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 PRINTS PR00410 Phenol hydroxylase reductase family signature 210 218 1.7E-6 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 SUPERFAMILY SSF52343 117 257 2.1E-27 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 TIGRFAM TIGR02911 sulfite_red_B: sulfite reductase, subunit B 19 279 5.1E-122 T 14-10-2018 IPR014260 Sulphite reductase, subunit B RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 SUPERFAMILY SSF63380 23 110 1.13E-15 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RY45_13375 7a5c3fbfae6f730193014a7d05634334 279 Pfam PF00175 Oxidoreductase NAD-binding domain 123 223 3.1E-15 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RY45_03115 d1733f5b952d1a4641bceb54bc5a22ee 465 Pfam PF03929 PepSY-associated TM region 13 403 6.9E-70 T 14-10-2018 IPR005625 PepSY-associated TM protein RY45_03115 d1733f5b952d1a4641bceb54bc5a22ee 465 Pfam PF03413 Peptidase propeptide and YPEB domain 292 348 4.6E-6 T 14-10-2018 IPR025711 PepSY domain RY45_01575 2cc9a9fde18d94a588850c9ccd93f01b 362 SMART SM00257 33 81 2.1E-4 T 14-10-2018 IPR018392 LysM domain RY45_01575 2cc9a9fde18d94a588850c9ccd93f01b 362 Gene3D G3DSA:3.10.350.10 32 79 5.2E-14 T 14-10-2018 IPR036779 LysM domain superfamily RY45_01575 2cc9a9fde18d94a588850c9ccd93f01b 362 Pfam PF01476 LysM domain 34 80 4.6E-14 T 14-10-2018 IPR018392 LysM domain RY45_01575 2cc9a9fde18d94a588850c9ccd93f01b 362 SUPERFAMILY SSF54106 33 80 1.14E-7 T 14-10-2018 RY45_07390 01fc2ccecea8fca6f6ebcb055476f71d 114 SUPERFAMILY SSF52833 1 102 9.8E-34 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_07390 01fc2ccecea8fca6f6ebcb055476f71d 114 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 5.2E-46 T 14-10-2018 IPR004480 Monothiol glutaredoxin-related RY45_07390 01fc2ccecea8fca6f6ebcb055476f71d 114 Gene3D G3DSA:3.40.30.10 2 107 2.0E-30 T 14-10-2018 RY45_07390 01fc2ccecea8fca6f6ebcb055476f71d 114 Pfam PF00462 Glutaredoxin 16 80 2.1E-17 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RY45_07390 01fc2ccecea8fca6f6ebcb055476f71d 114 PIRSF PIRSF005894 1 107 5.7E-51 T 14-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 4.3E-41 T 14-10-2018 IPR003004 GspF/PilC family RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 4.3E-41 T 14-10-2018 IPR003004 GspF/PilC family RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 4.3E-41 T 14-10-2018 IPR003004 GspF/PilC family RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 4.3E-41 T 14-10-2018 IPR003004 GspF/PilC family RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 14-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 404 2.4E-166 T 14-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 Gene3D G3DSA:1.20.81.30 56 173 4.2E-33 T 14-10-2018 RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 Gene3D G3DSA:1.20.81.30 257 370 2.5E-26 T 14-10-2018 RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 Pfam PF00482 Type II secretion system (T2SS), protein F 274 394 1.6E-26 T 14-10-2018 IPR018076 Type II secretion system F domain RY45_03295 b051503a360d9754ce5e97d1c4dd0eee 406 Pfam PF00482 Type II secretion system (T2SS), protein F 72 194 4.1E-32 T 14-10-2018 IPR018076 Type II secretion system F domain RY45_16830 fc763790d44776836a63729ad65dd4ac 298 Gene3D G3DSA:3.40.50.300 20 209 7.6E-21 T 14-10-2018 RY45_16830 fc763790d44776836a63729ad65dd4ac 298 SUPERFAMILY SSF52540 16 278 3.75E-21 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_16830 fc763790d44776836a63729ad65dd4ac 298 Pfam PF05621 Bacterial TniB protein 22 275 3.5E-106 T 14-10-2018 IPR008868 Bacterial TniB RY45_16830 fc763790d44776836a63729ad65dd4ac 298 SMART SM00382 55 209 5.0E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_17000 ce6f45eb11c67f990d05475937a18c2b 117 Gene3D G3DSA:3.40.1260.10 2 117 5.7E-33 T 14-10-2018 IPR027396 DsrEFH-like RY45_17000 ce6f45eb11c67f990d05475937a18c2b 117 Pfam PF02635 DsrE/DsrF-like family 4 117 2.9E-22 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein RY45_17000 ce6f45eb11c67f990d05475937a18c2b 117 SUPERFAMILY SSF75169 4 117 1.96E-31 T 14-10-2018 IPR027396 DsrEFH-like RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 PRINTS PR00113 Alkaline phosphatase signature 130 150 4.6E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 PRINTS PR00113 Alkaline phosphatase signature 32 52 4.6E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 PRINTS PR00113 Alkaline phosphatase signature 259 288 4.6E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 PRINTS PR00113 Alkaline phosphatase signature 82 97 4.6E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 PRINTS PR00113 Alkaline phosphatase signature 184 194 4.6E-47 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 Gene3D G3DSA:3.40.720.10 14 463 3.7E-143 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 SUPERFAMILY SSF53649 28 463 2.62E-131 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 SMART SM00098 33 463 4.6E-109 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_08740 b8f33e5a497aa76f8d5d41cad9c91033 463 Pfam PF00245 Alkaline phosphatase 32 463 3.9E-108 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RY45_21855 a1d9bda453793257bd589fb346b1def2 161 Pfam PF04463 Protein of unknown function (DUF523) 9 144 7.0E-44 T 14-10-2018 IPR007553 Domain of unknown function DUF523 RY45_14840 cf9fc020baca9dab79bf336d9b533846 201 SMART SM00858 79 141 3.4E-9 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RY45_14840 cf9fc020baca9dab79bf336d9b533846 201 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 67 199 2.8E-36 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RY45_14840 cf9fc020baca9dab79bf336d9b533846 201 Pfam PF13144 Chaperone for flagella basal body P-ring formation 1 199 3.9E-49 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RY45_14840 cf9fc020baca9dab79bf336d9b533846 201 Gene3D G3DSA:2.30.30.760 143 200 1.7E-15 T 14-10-2018 RY45_03675 298705a84223080aa75dcf253695e773 398 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 191 395 9.9E-70 T 14-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 RY45_03675 298705a84223080aa75dcf253695e773 398 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 5 78 9.3E-23 T 14-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 RY45_03675 298705a84223080aa75dcf253695e773 398 Pfam PF07670 Nucleoside recognition 89 184 1.1E-6 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RY45_05675 aa3d62a07dcf6247fb0f5e1a4d51be26 122 SMART SM00448 3 116 4.6E-37 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05675 aa3d62a07dcf6247fb0f5e1a4d51be26 122 Gene3D G3DSA:3.40.50.12740 1 121 7.2E-36 T 14-10-2018 RY45_05675 aa3d62a07dcf6247fb0f5e1a4d51be26 122 Pfam PF00072 Response regulator receiver domain 5 116 3.1E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RY45_05675 aa3d62a07dcf6247fb0f5e1a4d51be26 122 SUPERFAMILY SSF52172 3 120 1.57E-35 T 14-10-2018 IPR011006 CheY-like superfamily RY45_17965 cabb04a057f0547858f3f76cfb6cac64 501 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 65 412 1.2E-40 T 14-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RY45_17965 cabb04a057f0547858f3f76cfb6cac64 501 SUPERFAMILY SSF53383 31 494 1.6E-101 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_17965 cabb04a057f0547858f3f76cfb6cac64 501 Gene3D G3DSA:3.90.1150.170 46 492 1.7E-97 T 14-10-2018 RY45_17965 cabb04a057f0547858f3f76cfb6cac64 501 Gene3D G3DSA:3.40.640.10 103 357 1.7E-97 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 Pfam PF01739 CheR methyltransferase, SAM binding domain 74 268 5.9E-62 T 14-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RY45_14830 4d0757610f8398593219d716c5bb8f02 274 SUPERFAMILY SSF47757 3 73 2.09E-13 T 14-10-2018 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 SMART SM00138 6 271 3.1E-109 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 52 4.7E-10 T 14-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RY45_14830 4d0757610f8398593219d716c5bb8f02 274 Gene3D G3DSA:1.10.155.10 1 72 2.0E-8 T 14-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily RY45_14830 4d0757610f8398593219d716c5bb8f02 274 PRINTS PR00996 Glutamate methyltransferase family signature 211 225 8.7E-43 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 PRINTS PR00996 Glutamate methyltransferase family signature 230 253 8.7E-43 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 PRINTS PR00996 Glutamate methyltransferase family signature 104 124 8.7E-43 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 PRINTS PR00996 Glutamate methyltransferase family signature 28 41 8.7E-43 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 PRINTS PR00996 Glutamate methyltransferase family signature 67 79 8.7E-43 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 PRINTS PR00996 Glutamate methyltransferase family signature 142 158 8.7E-43 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 Gene3D G3DSA:3.40.50.150 73 273 4.6E-58 T 14-10-2018 RY45_14830 4d0757610f8398593219d716c5bb8f02 274 SUPERFAMILY SSF53335 74 269 2.7E-48 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_15235 5c6e3bbc04371929135f2a155c632788 322 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 283 1.8E-78 T 14-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain RY45_15235 5c6e3bbc04371929135f2a155c632788 322 Gene3D G3DSA:3.90.245.10 1 318 1.5E-101 T 14-10-2018 IPR036452 Ribonucleoside hydrolase-like RY45_15235 5c6e3bbc04371929135f2a155c632788 322 SUPERFAMILY SSF53590 3 286 1.05E-89 T 14-10-2018 IPR036452 Ribonucleoside hydrolase-like RY45_21860 a0683f542afdc7596b43e08a9e4f91f2 216 Gene3D G3DSA:1.10.10.10 137 212 8.4E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_21860 a0683f542afdc7596b43e08a9e4f91f2 216 SUPERFAMILY SSF46785 139 206 1.14E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_21860 a0683f542afdc7596b43e08a9e4f91f2 216 SUPERFAMILY SSF55811 5 131 2.5E-16 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_21860 a0683f542afdc7596b43e08a9e4f91f2 216 Gene3D G3DSA:3.90.79.10 4 136 7.6E-22 T 14-10-2018 RY45_15825 89ffaf741fb0f6d750e637cfa903e5c0 206 SUPERFAMILY SSF89155 14 194 6.15E-45 T 14-10-2018 IPR036411 TorD-like superfamily RY45_15825 89ffaf741fb0f6d750e637cfa903e5c0 206 Gene3D G3DSA:1.10.3480.10 14 198 1.8E-35 T 14-10-2018 RY45_15825 89ffaf741fb0f6d750e637cfa903e5c0 206 Pfam PF02613 Nitrate reductase delta subunit 63 165 2.6E-27 T 14-10-2018 IPR020945 DMSO/Nitrate reductase chaperone RY45_12260 decd889f0f2eb34c5936b196d7e9a8f8 459 Pfam PF01554 MatE 17 176 6.2E-36 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_12260 decd889f0f2eb34c5936b196d7e9a8f8 459 Pfam PF01554 MatE 243 403 1.2E-35 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_12260 decd889f0f2eb34c5936b196d7e9a8f8 459 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 421 2.5E-113 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_12260 decd889f0f2eb34c5936b196d7e9a8f8 459 PIRSF PIRSF006603 7 446 2.5E-62 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_17140 1062f62eff2a2242b3a609defbcc05d5 518 Gene3D G3DSA:3.90.76.10 33 189 1.2E-120 T 14-10-2018 RY45_17140 1062f62eff2a2242b3a609defbcc05d5 518 SUPERFAMILY SSF53850 26 514 2.02E-122 T 14-10-2018 RY45_17140 1062f62eff2a2242b3a609defbcc05d5 518 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 72 93 - T 14-10-2018 IPR023765 Solute-binding protein family 5, conserved site RY45_17140 1062f62eff2a2242b3a609defbcc05d5 518 Gene3D G3DSA:3.10.105.10 266 490 1.2E-120 T 14-10-2018 RY45_17140 1062f62eff2a2242b3a609defbcc05d5 518 Gene3D G3DSA:3.40.190.10 190 496 1.2E-120 T 14-10-2018 RY45_17140 1062f62eff2a2242b3a609defbcc05d5 518 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 429 2.5E-82 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain RY45_17140 1062f62eff2a2242b3a609defbcc05d5 518 PIRSF PIRSF002741 24 510 1.4E-92 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RY45_18295 99592f8a2beba4f44443d46d881abd8c 159 Gene3D G3DSA:2.40.50.870 22 159 1.2E-45 T 14-10-2018 RY45_18295 99592f8a2beba4f44443d46d881abd8c 159 Pfam PF11736 Protein of unknown function (DUF3299) 58 153 2.0E-42 T 14-10-2018 IPR021727 Protein of unknown function DUF3299 RY45_01465 50379884a408157ec65a37aaf5d454c6 397 Pfam PF11144 Protein of unknown function (DUF2920) 21 391 2.2E-148 T 14-10-2018 IPR022605 Protein of unknown function DUF2920 RY45_01465 50379884a408157ec65a37aaf5d454c6 397 SUPERFAMILY SSF53474 37 325 7.13E-21 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_06275 75c7f85a01915614cd1a8270f8c6d800 127 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 127 31.365 T 14-10-2018 IPR020911 Uncharacterised protein family UPF0325 RY45_06275 75c7f85a01915614cd1a8270f8c6d800 127 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 127 2.0E-44 T 14-10-2018 IPR020911 Uncharacterised protein family UPF0325 RY45_06275 75c7f85a01915614cd1a8270f8c6d800 127 Pfam PF11944 Protein of unknown function (DUF3461) 1 127 9.6E-58 T 14-10-2018 IPR020911 Uncharacterised protein family UPF0325 RY45_05680 56041f5a01e3c20fb82f2604f72a9a49 404 SMART SM00283 103 352 1.4E-4 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05680 56041f5a01e3c20fb82f2604f72a9a49 404 SUPERFAMILY SSF58104 109 348 3.92E-36 T 14-10-2018 RY45_05680 56041f5a01e3c20fb82f2604f72a9a49 404 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 181 314 1.9E-23 T 14-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RY45_05680 56041f5a01e3c20fb82f2604f72a9a49 404 Gene3D G3DSA:1.10.287.950 79 362 2.4E-35 T 14-10-2018 RY45_21175 5698d00de76a5d20134a499aeb6d935f 160 Pfam PF06496 Protein of unknown function (DUF1097) 8 140 1.4E-36 T 14-10-2018 IPR009476 Protein of unknown function DUF1097 RY45_15710 05d209e4ac316be7ba651c8bbf0f7736 213 Pfam PF04519 Polymer-forming cytoskeletal 81 177 9.1E-20 T 14-10-2018 IPR007607 Bactofilin A/B RY45_02810 12fdc0a0f400a09f36a4cede81b359a6 480 Gene3D G3DSA:3.30.1490.20 274 357 2.5E-6 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RY45_02810 12fdc0a0f400a09f36a4cede81b359a6 480 SUPERFAMILY SSF56059 264 464 1.75E-27 T 14-10-2018 RY45_02810 12fdc0a0f400a09f36a4cede81b359a6 480 Gene3D G3DSA:3.30.470.20 358 471 1.9E-10 T 14-10-2018 RY45_02810 12fdc0a0f400a09f36a4cede81b359a6 480 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 24 164 2.2E-33 T 14-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain RY45_18625 f4c9038a8777bff1f4a5eab9ee3eb563 269 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 269 19.842 T 14-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 RY45_18625 f4c9038a8777bff1f4a5eab9ee3eb563 269 Pfam PF16331 TolA binding protein trimerisation 51 125 4.6E-23 T 14-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 RY45_18625 f4c9038a8777bff1f4a5eab9ee3eb563 269 Gene3D G3DSA:1.20.5.110 49 126 4.7E-24 T 14-10-2018 RY45_18625 f4c9038a8777bff1f4a5eab9ee3eb563 269 Pfam PF13432 Tetratricopeptide repeat 161 211 5.8E-9 T 14-10-2018 RY45_18625 f4c9038a8777bff1f4a5eab9ee3eb563 269 Pfam PF13174 Tetratricopeptide repeat 224 256 9.1E-6 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RY45_18625 f4c9038a8777bff1f4a5eab9ee3eb563 269 Gene3D G3DSA:1.25.40.10 148 269 7.4E-29 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_18625 f4c9038a8777bff1f4a5eab9ee3eb563 269 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 148 266 6.0E-41 T 14-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal RY45_18625 f4c9038a8777bff1f4a5eab9ee3eb563 269 SUPERFAMILY SSF48452 144 258 7.97E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_11565 600353c1199a96f03dd2d96731190130 342 Pfam PF00589 Phage integrase family 167 329 7.0E-15 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RY45_11565 600353c1199a96f03dd2d96731190130 342 SUPERFAMILY SSF56349 147 337 9.71E-34 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RY45_11565 600353c1199a96f03dd2d96731190130 342 SUPERFAMILY SSF47823 26 146 1.28E-21 T 14-10-2018 RY45_11565 600353c1199a96f03dd2d96731190130 342 Gene3D G3DSA:1.10.443.10 148 331 7.3E-38 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RY45_11565 600353c1199a96f03dd2d96731190130 342 Gene3D G3DSA:1.10.150.130 21 146 6.5E-19 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal RY45_13235 63e78d3e26753e2bdfc79d795714911c 155 Pfam PF14267 Domain of unknown function (DUF4357) 93 147 5.2E-18 T 14-10-2018 IPR025579 Domain of unknown function DUF4357 RY45_05445 969899a08f386315254a61cb76a501d6 547 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 1 546 41.597 T 14-10-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 RY45_05445 969899a08f386315254a61cb76a501d6 547 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 10 235 4.2E-29 T 14-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 RY45_18510 f5200802bf64d48a2a5c385cbfddf4f3 206 Gene3D G3DSA:1.10.10.10 2 80 4.9E-10 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_18510 f5200802bf64d48a2a5c385cbfddf4f3 206 SUPERFAMILY SSF46785 7 184 1.43E-34 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_18510 f5200802bf64d48a2a5c385cbfddf4f3 206 Pfam PF08279 HTH domain 6 45 3.8E-5 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 RY45_11285 921bdcda4b8113705ae161e2dee89e36 158 SUPERFAMILY SSF56524 34 158 3.27E-14 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RY45_15495 d3bd42292419b427a93e7a338a3a7a33 447 Pfam PF13520 Amino acid permease 41 404 1.6E-34 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_15495 d3bd42292419b427a93e7a338a3a7a33 447 PIRSF PIRSF006060 1 447 3.5E-70 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_15495 d3bd42292419b427a93e7a338a3a7a33 447 Gene3D G3DSA:1.20.1740.10 7 438 8.7E-64 T 14-10-2018 RY45_00180 78ca9ca6ef34c914e3f69ce7eda06b33 221 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 129 157 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RY45_00180 78ca9ca6ef34c914e3f69ce7eda06b33 221 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 120 155 1.3E-9 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_00180 78ca9ca6ef34c914e3f69ce7eda06b33 221 Gene3D G3DSA:2.160.10.10 1 221 1.5E-67 T 14-10-2018 RY45_00180 78ca9ca6ef34c914e3f69ce7eda06b33 221 SUPERFAMILY SSF51161 66 217 2.77E-44 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_08415 1ba537f405ddb03286d41a97a88d9cd5 224 Pfam PF07386 Protein of unknown function (DUF1499) 84 210 7.7E-28 T 14-10-2018 IPR010865 Protein of unknown function DUF1499 RY45_14750 b9063645ea8f91a366fe8ef6bce2df0d 259 Pfam PF13230 Glutamine amidotransferases class-II 1 255 1.2E-111 T 14-10-2018 IPR026869 Putative glutamine amidotransferase type 2 RY45_14750 b9063645ea8f91a366fe8ef6bce2df0d 259 SUPERFAMILY SSF56235 2 253 1.21E-50 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_14750 b9063645ea8f91a366fe8ef6bce2df0d 259 Gene3D G3DSA:3.60.20.10 1 258 1.6E-98 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RY45_10720 b9306bed095e7bb83f4b586d7bad3c5c 65 Pfam PF14056 Domain of unknown function (DUF4250) 10 61 2.9E-19 T 14-10-2018 IPR025346 Protein of unknown function DUF4250 RY45_07225 91f3419b989e37f8bd152c216d6a9475 172 Pfam PF03748 Flagellar basal body-associated protein FliL 71 172 4.8E-21 T 14-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RY45_13545 6bae0197edfc6139bdb0d1846c095754 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 6.7E-21 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_13545 6bae0197edfc6139bdb0d1846c095754 326 Pfam PF00005 ABC transporter 24 180 4.5E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_13545 6bae0197edfc6139bdb0d1846c095754 326 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RY45_13545 6bae0197edfc6139bdb0d1846c095754 326 Gene3D G3DSA:3.40.50.300 1 324 1.5E-99 T 14-10-2018 RY45_13545 6bae0197edfc6139bdb0d1846c095754 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 315 1.3E-25 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RY45_13545 6bae0197edfc6139bdb0d1846c095754 326 SUPERFAMILY SSF52540 33 301 3.85E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_13545 6bae0197edfc6139bdb0d1846c095754 326 SMART SM00382 32 238 1.4E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_05270 bba32f06ec0fd82908e3bf44e842c835 278 Pfam PF01048 Phosphorylase superfamily 31 254 5.7E-37 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RY45_05270 bba32f06ec0fd82908e3bf44e842c835 278 Gene3D G3DSA:3.40.50.1580 27 275 4.4E-101 T 14-10-2018 RY45_05270 bba32f06ec0fd82908e3bf44e842c835 278 SUPERFAMILY SSF53167 20 274 8.12E-45 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RY45_16460 de84d45a6213a8330818468a4dae18bc 176 Pfam PF04351 Pilus assembly protein, PilP 21 169 9.4E-48 T 14-10-2018 IPR007446 Pilus assembly protein PilP RY45_16460 de84d45a6213a8330818468a4dae18bc 176 PIRSF PIRSF016481 1 173 2.7E-37 T 14-10-2018 IPR007446 Pilus assembly protein PilP RY45_16460 de84d45a6213a8330818468a4dae18bc 176 Gene3D G3DSA:2.30.30.830 76 170 2.2E-26 T 14-10-2018 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 21 177 1.7E-23 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 Gene3D G3DSA:3.40.50.1370 167 362 5.3E-229 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 SUPERFAMILY SSF53671 18 373 1.7E-56 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 TIGRFAM TIGR03316 ygeW: knotted carbamoyltransferase YgeW 5 393 4.9E-200 T 14-10-2018 IPR017702 Putative carbamoyltransferase YgeW RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 PRINTS PR00101 Aspartate carbamoyltransferase signature 163 180 7.0E-7 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 PRINTS PR00101 Aspartate carbamoyltransferase signature 94 103 7.0E-7 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 PRINTS PR00101 Aspartate carbamoyltransferase signature 56 78 7.0E-7 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 186 373 9.4E-41 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 322 331 6.2E-8 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 66 85 6.2E-8 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 340 363 6.2E-8 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RY45_12035 040170237cb2e0fc72b950c49c5674e3 395 Gene3D G3DSA:3.40.50.1370 5 392 5.3E-229 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RY45_01550 f7d94f67a528bdbda5b255d0d0d14453 480 PIRSF PIRSF006247 1 480 1.6E-164 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 RY45_01550 f7d94f67a528bdbda5b255d0d0d14453 480 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 85 463 2.4E-108 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 RY45_01550 f7d94f67a528bdbda5b255d0d0d14453 480 Pfam PF02386 Cation transport protein 64 474 1.4E-55 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RY45_06960 369d644682675de003eeae72a6194fd5 159 Gene3D G3DSA:3.40.630.30 9 123 1.8E-11 T 14-10-2018 RY45_06960 369d644682675de003eeae72a6194fd5 159 Pfam PF13673 Acetyltransferase (GNAT) domain 36 122 2.8E-11 T 14-10-2018 IPR000182 GNAT domain RY45_06960 369d644682675de003eeae72a6194fd5 159 SUPERFAMILY SSF55729 14 127 3.38E-15 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_00295 82d5465f57187f0afa57b6817f799b4d 221 SUPERFAMILY SSF49354 19 120 2.01E-5 T 14-10-2018 IPR008962 PapD-like superfamily RY45_00295 82d5465f57187f0afa57b6817f799b4d 221 Gene3D G3DSA:2.60.40.10 21 143 3.9E-7 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_05010 3696f0886a63118d688df711b8206546 232 Gene3D G3DSA:3.40.1550.10 14 178 5.5E-18 T 14-10-2018 IPR028976 CheC-like superfamily RY45_05010 3696f0886a63118d688df711b8206546 232 SUPERFAMILY SSF103039 15 178 3.92E-22 T 14-10-2018 IPR028976 CheC-like superfamily RY45_05010 3696f0886a63118d688df711b8206546 232 Pfam PF11813 Protein of unknown function (DUF3334) 9 232 6.4E-116 T 14-10-2018 IPR024513 Protein of unknown function DUF3334 RY45_19180 8a196ba916078f47bfc567c50ba42fb0 275 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 62 73 1.7E-12 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_19180 8a196ba916078f47bfc567c50ba42fb0 275 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 112 129 1.7E-12 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_19180 8a196ba916078f47bfc567c50ba42fb0 275 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 139 152 1.7E-12 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RY45_19180 8a196ba916078f47bfc567c50ba42fb0 275 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 256 4.2E-64 T 14-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RY45_19180 8a196ba916078f47bfc567c50ba42fb0 275 Gene3D G3DSA:3.40.710.10 21 275 3.0E-70 T 14-10-2018 RY45_19180 8a196ba916078f47bfc567c50ba42fb0 275 SUPERFAMILY SSF56601 10 274 3.56E-66 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RY45_10765 b86447dc59515b5d381725f09443f0af 77 SUPERFAMILY SSF55174 5 68 9.16E-18 T 14-10-2018 RY45_10765 b86447dc59515b5d381725f09443f0af 77 Gene3D G3DSA:3.10.290.10 1 69 3.2E-23 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RY45_10765 b86447dc59515b5d381725f09443f0af 77 Pfam PF13275 S4 domain 8 68 2.2E-21 T 14-10-2018 RY45_21515 1a465953f5dceaa4b5cd6395724bc920 475 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 16 445 3.5E-133 T 14-10-2018 IPR003846 Uncharacterised protein family UPF0061 RY45_21515 1a465953f5dceaa4b5cd6395724bc920 475 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 1 461 41.518 T 14-10-2018 IPR003846 Uncharacterised protein family UPF0061 RY45_14520 3dbdd608fe41ec62eb78ea3b4a832bc9 704 SUPERFAMILY SSF48695 198 689 4.56E-28 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_14520 3dbdd608fe41ec62eb78ea3b4a832bc9 704 TIGRFAM TIGR03507 decahem_SO1788: decaheme c-type cytochrome, OmcA/MtrC family 53 698 8.0E-168 T 14-10-2018 IPR020014 Decahaem cytochrome, c-type, OmcA/MtrC RY45_14520 3dbdd608fe41ec62eb78ea3b4a832bc9 704 Gene3D G3DSA:3.40.970.50 516 560 2.8E-5 T 14-10-2018 RY45_14645 17b058cae1400a518d9af5e9b84068d8 226 Gene3D G3DSA:1.10.3720.10 2 223 3.9E-47 T 14-10-2018 IPR035906 MetI-like superfamily RY45_14645 17b058cae1400a518d9af5e9b84068d8 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 218 4.6E-16 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_14645 17b058cae1400a518d9af5e9b84068d8 226 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 10 215 8.9E-68 T 14-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 RY45_14645 17b058cae1400a518d9af5e9b84068d8 226 SUPERFAMILY SSF161098 6 214 1.44E-42 T 14-10-2018 IPR035906 MetI-like superfamily RY45_10150 9027002d823f55bbf419833db0716bf9 244 Pfam PF03741 Integral membrane protein TerC family 16 204 2.5E-49 T 14-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RY45_16230 cde4856fb066c262fc9184d2e19c5d53 266 Pfam PF13369 Transglutaminase-like superfamily 37 182 7.5E-40 T 14-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 RY45_16230 cde4856fb066c262fc9184d2e19c5d53 266 Pfam PF13371 Tetratricopeptide repeat 185 256 2.8E-24 T 14-10-2018 RY45_16230 cde4856fb066c262fc9184d2e19c5d53 266 SUPERFAMILY SSF48452 188 254 5.18E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_01215 ada53ab4deceee4d742949cea65442a2 465 Pfam PF01554 MatE 26 186 3.2E-24 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_01215 ada53ab4deceee4d742949cea65442a2 465 Pfam PF01554 MatE 254 410 1.3E-14 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_01215 ada53ab4deceee4d742949cea65442a2 465 TIGRFAM TIGR00797 matE: MATE efflux family protein 26 423 6.2E-77 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_10610 910720f930d1feb7dbf52ce6aec4b12f 510 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 444 9.0E-143 T 14-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane RY45_12390 00dbb40db68af5f1e15f8c2755e8ebb9 122 Pfam PF10980 Protein of unknown function (DUF2787) 18 116 4.1E-31 T 14-10-2018 IPR021248 Protein of unknown function DUF2787 RY45_12390 00dbb40db68af5f1e15f8c2755e8ebb9 122 Gene3D G3DSA:3.10.450.430 2 121 1.1E-34 T 14-10-2018 RY45_04455 8ca1cb78c0372c7396728c270ecb4e92 89 Gene3D G3DSA:1.10.150.250 2 88 2.3E-33 T 14-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily RY45_04455 8ca1cb78c0372c7396728c270ecb4e92 89 Pfam PF03937 Flavinator of succinate dehydrogenase 8 76 4.4E-26 T 14-10-2018 IPR005631 Flavinator of succinate dehydrogenase RY45_04455 8ca1cb78c0372c7396728c270ecb4e92 89 SUPERFAMILY SSF109910 2 79 4.71E-27 T 14-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily RY45_02650 1a43b3c49a962bef59b86fafbf8748d0 387 Gene3D G3DSA:1.25.40.10 78 227 1.5E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_02650 1a43b3c49a962bef59b86fafbf8748d0 387 Gene3D G3DSA:1.25.40.10 232 386 9.9E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_02650 1a43b3c49a962bef59b86fafbf8748d0 387 SUPERFAMILY SSF48452 144 384 8.73E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_02650 1a43b3c49a962bef59b86fafbf8748d0 387 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 381 6.4E-89 T 14-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 RY45_02650 1a43b3c49a962bef59b86fafbf8748d0 387 Pfam PF07219 HemY protein N-terminus 26 132 8.3E-31 T 14-10-2018 IPR010817 HemY, N-terminal RY45_08000 85e92a2fa44264b21d34d6bd0252d672 311 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 300 6.0E-92 T 14-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain RY45_08000 85e92a2fa44264b21d34d6bd0252d672 311 SUPERFAMILY SSF53590 4 308 1.23E-105 T 14-10-2018 IPR036452 Ribonucleoside hydrolase-like RY45_08000 85e92a2fa44264b21d34d6bd0252d672 311 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 8 18 - T 14-10-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 RY45_08000 85e92a2fa44264b21d34d6bd0252d672 311 Gene3D G3DSA:3.90.245.10 1 311 9.4E-131 T 14-10-2018 IPR036452 Ribonucleoside hydrolase-like RY45_17870 78270e854c03f086a426d3be45b627c3 425 SUPERFAMILY SSF53474 18 209 4.63E-27 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_17870 78270e854c03f086a426d3be45b627c3 425 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 54 62 2.3E-9 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RY45_17870 78270e854c03f086a426d3be45b627c3 425 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 84 95 2.3E-9 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RY45_17870 78270e854c03f086a426d3be45b627c3 425 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 142 156 2.3E-9 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RY45_17870 78270e854c03f086a426d3be45b627c3 425 SUPERFAMILY SSF53474 273 418 1.68E-7 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_17870 78270e854c03f086a426d3be45b627c3 425 Gene3D G3DSA:3.40.50.1820 25 264 1.8E-22 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_17870 78270e854c03f086a426d3be45b627c3 425 Pfam PF00561 alpha/beta hydrolase fold 52 309 5.0E-36 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_06520 ffd945c820a84656bb239e33d9f91d5e 352 Pfam PF00535 Glycosyl transferase family 2 9 173 9.7E-34 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RY45_06520 ffd945c820a84656bb239e33d9f91d5e 352 SUPERFAMILY SSF53448 7 260 1.38E-42 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_06520 ffd945c820a84656bb239e33d9f91d5e 352 Gene3D G3DSA:3.90.550.10 2 210 8.9E-37 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RY45_06240 fe276ce8bf83fb6eac11c8d65d2a6dbb 342 Pfam PF12069 Protein of unknown function (DUF3549) 3 339 5.3E-123 T 14-10-2018 IPR021936 Protein of unknown function DUF3549 RY45_07425 8366282a19fbdfe933045d20dc541959 169 Gene3D G3DSA:3.40.630.30 1 166 3.7E-45 T 14-10-2018 RY45_07425 8366282a19fbdfe933045d20dc541959 169 Pfam PF13527 Acetyltransferase (GNAT) domain 3 122 5.6E-9 T 14-10-2018 RY45_07425 8366282a19fbdfe933045d20dc541959 169 SUPERFAMILY SSF55729 1 140 4.88E-25 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_19510 faa6952d398c7153151a772c3b2de0b1 421 Pfam PF01384 Phosphate transporter family 26 409 7.6E-113 T 14-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RY45_18180 06d63fa712d7027df8da510cd92c60db 264 SUPERFAMILY SSF51621 3 263 8.97E-106 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RY45_18180 06d63fa712d7027df8da510cd92c60db 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 3 263 2.8E-110 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RY45_18180 06d63fa712d7027df8da510cd92c60db 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 258 5.1E-108 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RY45_18180 06d63fa712d7027df8da510cd92c60db 264 PIRSF PIRSF000388 1 264 3.9E-99 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RY45_18180 06d63fa712d7027df8da510cd92c60db 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 41.901 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RY45_18180 06d63fa712d7027df8da510cd92c60db 264 Gene3D G3DSA:3.20.20.60 1 264 5.9E-107 T 14-10-2018 RY45_18235 e6489b7a9a6e02a3d82770e845f1f593 176 SUPERFAMILY SSF53271 3 175 1.57E-51 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like RY45_18235 e6489b7a9a6e02a3d82770e845f1f593 176 Pfam PF00156 Phosphoribosyl transferase domain 13 159 1.1E-21 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RY45_18235 e6489b7a9a6e02a3d82770e845f1f593 176 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 3.5E-70 T 14-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 RY45_18235 e6489b7a9a6e02a3d82770e845f1f593 176 Gene3D G3DSA:3.40.50.2020 1 176 4.6E-63 T 14-10-2018 RY45_20560 0a4e20e7387bbaeb59542c3919e3267c 210 Pfam PF05494 MlaC protein 35 199 1.6E-49 T 14-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RY45_20560 0a4e20e7387bbaeb59542c3919e3267c 210 Gene3D G3DSA:3.10.450.710 26 205 1.5E-45 T 14-10-2018 RY45_20560 0a4e20e7387bbaeb59542c3919e3267c 210 PIRSF PIRSF004649 1 209 4.0E-60 T 14-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RY45_08160 a542f6c7cc19243ef6665c4477ec7ff7 71 Pfam PF04325 Protein of unknown function (DUF465) 19 66 7.2E-14 T 14-10-2018 IPR007420 Protein of unknown function DUF465 RY45_08160 a542f6c7cc19243ef6665c4477ec7ff7 71 Gene3D G3DSA:1.20.58.660 1 71 2.7E-25 T 14-10-2018 RY45_15890 f102b9629085772853dc74c5db43f8c0 354 Pfam PF04632 Fusaric acid resistance protein family 20 337 1.7E-20 T 14-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 RY45_12635 1e0665928e9b14da55885a7f43803144 413 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 411 2.1E-139 T 14-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RY45_12635 1e0665928e9b14da55885a7f43803144 413 Pfam PF12704 MacB-like periplasmic core domain 29 207 1.2E-14 T 14-10-2018 IPR025857 MacB-like periplasmic core domain RY45_12635 1e0665928e9b14da55885a7f43803144 413 Pfam PF02687 FtsX-like permease family 299 403 1.7E-10 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RY45_04000 d799d39201b9ebfd77b20b03cacb526e 278 Pfam PF00892 EamA-like transporter family 145 276 7.1E-13 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_04000 d799d39201b9ebfd77b20b03cacb526e 278 SUPERFAMILY SSF103481 176 277 1.03E-12 T 14-10-2018 RY45_04000 d799d39201b9ebfd77b20b03cacb526e 278 SUPERFAMILY SSF103481 38 135 3.01E-10 T 14-10-2018 RY45_00790 c1dbd669c9f2296aa374d6ae0eeaec73 85 Pfam PF04380 Membrane fusogenic activity 1 78 8.7E-31 T 14-10-2018 IPR007475 Membrane fusogenic activity RY45_11045 5e6e2dce354b5583b8b7160d0e917bee 409 SUPERFAMILY SSF53335 134 227 1.71E-6 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_11045 5e6e2dce354b5583b8b7160d0e917bee 409 Pfam PF13679 Methyltransferase domain 133 238 5.3E-13 T 14-10-2018 IPR025714 Methyltransferase domain RY45_12730 3d1d68113d3489e073b7e9a773b3c335 622 Pfam PF02705 K+ potassium transporter 14 544 1.0E-206 T 14-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 RY45_12730 3d1d68113d3489e073b7e9a773b3c335 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.822 T 14-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup RY45_19920 8ac6802f382c48492242daaf2a03b22b 220 SMART SM01207 10 185 8.1E-82 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 RY45_19920 8ac6802f382c48492242daaf2a03b22b 220 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 193 2.9E-68 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 RY45_19920 8ac6802f382c48492242daaf2a03b22b 220 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 19.269 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 RY45_19920 8ac6802f382c48492242daaf2a03b22b 220 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 5.3E-48 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 RY45_10285 71515c547db5aa208d4bafe290899d81 201 Pfam PF06037 Bacterial protein of unknown function (DUF922) 41 192 2.4E-41 T 14-10-2018 IPR010321 Protein of unknown function DUF922 RY45_14495 38d036252d90c3b62a81b45a37f10be3 241 SUPERFAMILY SSF56300 1 219 1.9E-33 T 14-10-2018 RY45_14495 38d036252d90c3b62a81b45a37f10be3 241 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 7.6E-12 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RY45_14495 38d036252d90c3b62a81b45a37f10be3 241 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 241 127.508 T 14-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 RY45_14495 38d036252d90c3b62a81b45a37f10be3 241 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 227 2.8E-101 T 14-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 RY45_14495 38d036252d90c3b62a81b45a37f10be3 241 Gene3D G3DSA:3.60.21.10 1 227 2.2E-16 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like RY45_04330 1618e4ef916172e37f9ac070dc9ac6a6 403 SUPERFAMILY SSF53686 4 388 2.36E-89 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RY45_04330 1618e4ef916172e37f9ac070dc9ac6a6 403 Gene3D G3DSA:3.40.50.1100 111 207 7.9E-108 T 14-10-2018 RY45_04330 1618e4ef916172e37f9ac070dc9ac6a6 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 74 379 4.4E-70 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RY45_04330 1618e4ef916172e37f9ac070dc9ac6a6 403 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 102 116 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RY45_04330 1618e4ef916172e37f9ac070dc9ac6a6 403 Gene3D G3DSA:3.40.50.1100 60 385 7.9E-108 T 14-10-2018 RY45_10080 c9bf7895cf3b7ea755609ed3e1e43197 319 SUPERFAMILY SSF161098 67 294 1.96E-19 T 14-10-2018 IPR035906 MetI-like superfamily RY45_10080 c9bf7895cf3b7ea755609ed3e1e43197 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 311 1.5E-41 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_21370 55cf6fb878094e87964b208ea3c49086 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 325 3.5E-47 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RY45_00270 596c0a750de3583ca023bee5ccb77d8b 406 Pfam PF07690 Major Facilitator Superfamily 32 255 2.5E-15 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RY45_00270 596c0a750de3583ca023bee5ccb77d8b 406 SUPERFAMILY SSF103473 13 400 1.18E-52 T 14-10-2018 IPR036259 MFS transporter superfamily RY45_00270 596c0a750de3583ca023bee5ccb77d8b 406 Gene3D G3DSA:1.20.1250.20 219 405 5.1E-21 T 14-10-2018 RY45_00270 596c0a750de3583ca023bee5ccb77d8b 406 Gene3D G3DSA:1.20.1250.20 6 203 1.9E-18 T 14-10-2018 RY45_17670 d59a8de59288ac29ec7bab7a98bcb5a8 851 SUPERFAMILY SSF56935 26 851 8.55E-93 T 14-10-2018 RY45_17670 d59a8de59288ac29ec7bab7a98bcb5a8 851 Gene3D G3DSA:2.40.170.20 280 831 6.1E-56 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RY45_17670 d59a8de59288ac29ec7bab7a98bcb5a8 851 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 164 6.2E-21 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain RY45_17670 d59a8de59288ac29ec7bab7a98bcb5a8 851 Gene3D G3DSA:2.170.130.10 33 168 2.3E-34 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RY45_17670 d59a8de59288ac29ec7bab7a98bcb5a8 851 Pfam PF00593 TonB dependent receptor 359 846 5.4E-47 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RY45_17265 557e4e2c9d11b5b6da2f9ab50c4c27bb 87 Pfam PF06196 Protein of unknown function (DUF997) 7 75 6.5E-23 T 14-10-2018 IPR010398 Protein of unknown function DUF997 RY45_17265 557e4e2c9d11b5b6da2f9ab50c4c27bb 87 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 25 74 4.0E-7 T 14-10-2018 IPR010398 Protein of unknown function DUF997 RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 Pfam PF03466 LysR substrate binding domain 90 296 3.0E-36 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 Gene3D G3DSA:3.40.190.290 94 297 3.1E-46 T 14-10-2018 RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.5E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.8E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.8E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.8E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 SUPERFAMILY SSF53850 90 297 1.63E-39 T 14-10-2018 RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 Gene3D G3DSA:1.10.10.10 4 93 4.0E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_06435 0db6c2b6a51bac667421f25ead0283b0 298 SUPERFAMILY SSF46785 2 84 2.18E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_17230 bbb578763a41088c1b3505802aba5b8a 211 SUPERFAMILY SSF56935 22 210 2.79E-5 T 14-10-2018 RY45_14905 3050cce743982c7636cfc489c7ad6902 296 SUPERFAMILY SSF103481 200 287 3.79E-10 T 14-10-2018 RY45_14905 3050cce743982c7636cfc489c7ad6902 296 SUPERFAMILY SSF103481 44 134 5.62E-13 T 14-10-2018 RY45_14905 3050cce743982c7636cfc489c7ad6902 296 Pfam PF00892 EamA-like transporter family 141 281 4.2E-17 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_14905 3050cce743982c7636cfc489c7ad6902 296 Pfam PF00892 EamA-like transporter family 7 131 4.2E-15 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_15705 3c3ed35929c87530e11e49670ac3e572 182 SUPERFAMILY SSF81342 4 178 5.41E-35 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RY45_15705 3c3ed35929c87530e11e49670ac3e572 182 Pfam PF01292 Prokaryotic cytochrome b561 8 178 1.9E-22 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RY45_22015 0d41b100db227f849d3d855433f2229c 278 Pfam PF00899 ThiF family 17 262 5.6E-44 T 14-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RY45_22015 0d41b100db227f849d3d855433f2229c 278 Gene3D G3DSA:3.40.50.720 1 271 2.3E-105 T 14-10-2018 RY45_22015 0d41b100db227f849d3d855433f2229c 278 SUPERFAMILY SSF69572 4 260 4.97E-68 T 14-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RY45_04120 cfd30d5f5cfcd2d598c734abf87eaac0 152 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 32 81 2.1E-13 T 14-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RY45_04120 cfd30d5f5cfcd2d598c734abf87eaac0 152 Gene3D G3DSA:1.20.1290.10 1 149 1.0E-47 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RY45_04120 cfd30d5f5cfcd2d598c734abf87eaac0 152 Pfam PF02627 Carboxymuconolactone decarboxylase family 15 96 1.1E-18 T 14-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RY45_04120 cfd30d5f5cfcd2d598c734abf87eaac0 152 SUPERFAMILY SSF69118 11 147 7.3E-43 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RY45_09005 dc9f0969006579574b422239805e8e2b 98 SUPERFAMILY SSF54909 1 96 3.47E-33 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel RY45_09005 dc9f0969006579574b422239805e8e2b 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 4 79 1.7E-23 T 14-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RY45_09005 dc9f0969006579574b422239805e8e2b 98 Gene3D G3DSA:3.30.70.100 1 98 1.3E-30 T 14-10-2018 RY45_14785 5b21543b115115068af0aca24c59f13f 363 Gene3D G3DSA:1.10.530.10 205 344 2.0E-45 T 14-10-2018 RY45_14785 5b21543b115115068af0aca24c59f13f 363 SMART SM00047 190 354 1.2E-35 T 14-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RY45_14785 5b21543b115115068af0aca24c59f13f 363 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 15 347 3.1E-82 T 14-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 RY45_14785 5b21543b115115068af0aca24c59f13f 363 Pfam PF10135 Rod binding protein 55 105 7.7E-13 T 14-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal RY45_14785 5b21543b115115068af0aca24c59f13f 363 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 211 346 1.1E-20 T 14-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RY45_14785 5b21543b115115068af0aca24c59f13f 363 Gene3D G3DSA:2.10.70.40 239 291 2.0E-45 T 14-10-2018 RY45_14785 5b21543b115115068af0aca24c59f13f 363 SUPERFAMILY SSF53955 195 256 1.55E-5 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_14620 edd2a379e38fcb2908ab6955fb3d1449 97 Pfam PF06291 Bor protein 19 95 2.6E-20 T 14-10-2018 IPR010438 Bor GO:0009279 RY45_14620 edd2a379e38fcb2908ab6955fb3d1449 97 ProDom PD020173 BOR LIPOPROTEIN PLASMID ISS HOMOLOG MEMBRANE FROM PRECURSOR PALMITATE DLP12 1 96 3.0E-19 T 14-10-2018 IPR010438 Bor GO:0009279 RY45_21715 f2a1445c376f0740c9dd5f44b78fd5a8 248 Gene3D G3DSA:3.40.50.150 1 248 4.3E-87 T 14-10-2018 RY45_21715 f2a1445c376f0740c9dd5f44b78fd5a8 248 SUPERFAMILY SSF53335 50 216 2.57E-5 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_13880 4eaa0a8979481503004381d2e14065a5 117 Gene3D G3DSA:1.25.40.10 2 117 2.5E-44 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_13880 4eaa0a8979481503004381d2e14065a5 117 Pfam PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) 2 115 2.3E-39 T 14-10-2018 IPR013348 Type III secretion system YscG GO:0009405 RY45_13880 4eaa0a8979481503004381d2e14065a5 117 TIGRFAM TIGR02508 type_III_yscG: type III secretion protein, YscG family 2 116 6.7E-48 T 14-10-2018 IPR013348 Type III secretion system YscG GO:0009405 RY45_02690 957f666c1312e73d7e3a8c03b30d44d1 276 Gene3D G3DSA:3.10.310.10 5 272 6.0E-107 T 14-10-2018 RY45_02690 957f666c1312e73d7e3a8c03b30d44d1 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 14-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RY45_02690 957f666c1312e73d7e3a8c03b30d44d1 276 Gene3D G3DSA:3.10.310.10 117 263 6.0E-107 T 14-10-2018 RY45_02690 957f666c1312e73d7e3a8c03b30d44d1 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 39.508 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RY45_02690 957f666c1312e73d7e3a8c03b30d44d1 276 Pfam PF01678 Diaminopimelate epimerase 5 125 6.7E-34 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RY45_02690 957f666c1312e73d7e3a8c03b30d44d1 276 Pfam PF01678 Diaminopimelate epimerase 154 269 1.2E-30 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RY45_02690 957f666c1312e73d7e3a8c03b30d44d1 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 275 4.4E-101 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RY45_02690 957f666c1312e73d7e3a8c03b30d44d1 276 SUPERFAMILY SSF54506 3 276 8.23E-56 T 14-10-2018 RY45_00375 2bb9f50ccc54b572d4337fa51cdfdc66 94 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 6 83 2.0E-12 T 14-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative RY45_03845 967f88e5305033a09428cadeeac448bb 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.6E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RY45_03845 967f88e5305033a09428cadeeac448bb 310 Gene3D G3DSA:3.40.190.10 169 265 1.1E-5 T 14-10-2018 RY45_03845 967f88e5305033a09428cadeeac448bb 310 Pfam PF03466 LysR substrate binding domain 97 286 9.2E-11 T 14-10-2018 IPR005119 LysR, substrate-binding RY45_03845 967f88e5305033a09428cadeeac448bb 310 SUPERFAMILY SSF46785 2 85 1.41E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_03845 967f88e5305033a09428cadeeac448bb 310 SUPERFAMILY SSF53850 90 287 1.26E-22 T 14-10-2018 RY45_03845 967f88e5305033a09428cadeeac448bb 310 Gene3D G3DSA:1.10.10.10 3 93 3.8E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_03845 967f88e5305033a09428cadeeac448bb 310 Gene3D G3DSA:3.40.190.10 97 273 1.1E-5 T 14-10-2018 RY45_15505 1953254710b8e31d0c19decf72d8ebee 384 Pfam PF02690 Na+/Pi-cotransporter 30 185 1.5E-19 T 14-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 RY45_15505 1953254710b8e31d0c19decf72d8ebee 384 Pfam PF02690 Na+/Pi-cotransporter 219 331 2.1E-18 T 14-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 RY45_12070 4201ff19a5c5926825811258fbeea167 316 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 36 166 9.3E-61 T 14-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RY45_12070 4201ff19a5c5926825811258fbeea167 316 Gene3D G3DSA:1.10.8.300 197 313 8.8E-33 T 14-10-2018 RY45_12070 4201ff19a5c5926825811258fbeea167 316 Gene3D G3DSA:3.40.50.300 1 193 3.4E-44 T 14-10-2018 RY45_12070 4201ff19a5c5926825811258fbeea167 316 PIRSF PIRSF002849 1 316 2.2E-117 T 14-10-2018 RY45_12070 4201ff19a5c5926825811258fbeea167 316 SUPERFAMILY SSF52540 7 288 5.94E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_10175 b57bbc0293228ae294d75ba7ce5454e2 228 Pfam PF04172 LrgB-like family 10 222 1.2E-73 T 14-10-2018 IPR007300 CidB/LrgB family RY45_02420 27a05398397704970b7722c7a531a5af 139 Gene3D G3DSA:3.10.450.50 4 116 2.0E-6 T 14-10-2018 RY45_02420 27a05398397704970b7722c7a531a5af 139 SUPERFAMILY SSF54427 1 108 3.22E-8 T 14-10-2018 IPR032710 NTF2-like domain superfamily RY45_01515 5b32284d3e752d34fae64926f18768eb 251 Gene3D G3DSA:3.40.50.880 32 232 1.8E-44 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_01515 5b32284d3e752d34fae64926f18768eb 251 SUPERFAMILY SSF52317 48 201 8.56E-38 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_01515 5b32284d3e752d34fae64926f18768eb 251 Pfam PF00117 Glutamine amidotransferase class-I 54 191 5.8E-10 T 14-10-2018 IPR017926 Glutamine amidotransferase RY45_12050 3fecabc468cb7a93438d56782f27be33 294 Pfam PF03547 Membrane transport protein 130 284 3.4E-10 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RY45_19445 cd592aa516158b102c6e996ab5444ed1 79 Pfam PF07869 Protein of unknown function (DUF1656) 20 70 8.6E-13 T 14-10-2018 IPR012451 Protein of unknown function DUF1656 RY45_08970 2a8f6c576bdff5924610074ca9a0b3ae 216 Pfam PF04391 Protein of unknown function (DUF533) 30 209 1.3E-61 T 14-10-2018 IPR007486 Inner membrane protein YebE RY45_08970 2a8f6c576bdff5924610074ca9a0b3ae 216 SUPERFAMILY SSF158682 65 210 3.14E-21 T 14-10-2018 IPR029024 TerB-like RY45_14680 df952257b783fb1d51c47373259f6538 151 PIRSF PIRSF006105 1 151 3.3E-48 T 14-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB RY45_14680 df952257b783fb1d51c47373259f6538 151 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 28 146 3.8E-47 T 14-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB RY45_14680 df952257b783fb1d51c47373259f6538 151 SUPERFAMILY SSF48695 35 147 7.81E-41 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_14680 df952257b783fb1d51c47373259f6538 151 Gene3D G3DSA:1.10.1130.10 65 132 9.7E-27 T 14-10-2018 RY45_10095 7a919b84cf9333b078bdd46231ff05c0 226 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 216 1.1E-86 T 14-10-2018 IPR014319 Phage shock protein, PspA RY45_10095 7a919b84cf9333b078bdd46231ff05c0 226 Pfam PF04012 PspA/IM30 family 2 215 4.8E-46 T 14-10-2018 IPR007157 PspA/IM30 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 Pfam PF03222 Tryptophan/tyrosine permease family 4 394 7.7E-124 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 Gene3D G3DSA:1.20.1740.10 3 407 1.1E-5 T 14-10-2018 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 9 388 1.5E-127 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 39 58 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 281 300 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 315 333 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 182 204 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 220 239 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 12 35 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 84 104 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 144 164 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00890 0950b7c0d377e3b51000d791353f7429 408 PRINTS PR00166 Aromatic amino acid permease signature 336 355 9.0E-80 T 14-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 RY45_00275 ca1053c0f9db1d77380ec954aae77224 212 PIRSF PIRSF006324 5 212 1.9E-49 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_00275 ca1053c0f9db1d77380ec954aae77224 212 Pfam PF01810 LysE type translocator 19 209 4.2E-43 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_20480 335c404494028e5fa53e3cb893af7b6f 371 Pfam PF03841 L-seryl-tRNA selenium transferase 120 271 2.4E-12 T 14-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RY45_20480 335c404494028e5fa53e3cb893af7b6f 371 Gene3D G3DSA:3.40.640.10 23 277 3.4E-48 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RY45_20480 335c404494028e5fa53e3cb893af7b6f 371 SUPERFAMILY SSF53383 7 368 6.91E-36 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RY45_20480 335c404494028e5fa53e3cb893af7b6f 371 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 1.3E-184 T 14-10-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 RY45_02755 b5bbb044a85a39b9759562c408ec5ab6 364 Pfam PF12698 ABC-2 family transporter protein 26 356 5.5E-48 T 14-10-2018 RY45_02755 b5bbb044a85a39b9759562c408ec5ab6 364 PRINTS PR00164 ABC-2 type transport system membrane protein signature 306 325 4.4E-8 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RY45_02755 b5bbb044a85a39b9759562c408ec5ab6 364 PRINTS PR00164 ABC-2 type transport system membrane protein signature 249 273 4.4E-8 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RY45_02755 b5bbb044a85a39b9759562c408ec5ab6 364 PRINTS PR00164 ABC-2 type transport system membrane protein signature 286 305 4.4E-8 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RY45_04085 e26f89b0772b5b2c2f49bb689a11db11 159 Pfam PF03603 DNA polymerase III psi subunit 26 154 1.7E-7 T 14-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RY45_19285 f76b9fd4475e133abdcb7724303d566c 430 Gene3D G3DSA:3.30.1040.50 102 150 1.4E-9 T 14-10-2018 RY45_19285 f76b9fd4475e133abdcb7724303d566c 430 Pfam PF16448 LapD/MoxY periplasmic domain 23 146 5.7E-34 T 14-10-2018 IPR032244 LapD/MoxY, periplasmic domain RY45_02610 fea5ec6db7d1c3e26b82e0d1de4552fa 190 PIRSF PIRSF028288 3 190 1.1E-78 T 14-10-2018 IPR016878 Uncharacterised conserved protein UCP028288 RY45_02610 fea5ec6db7d1c3e26b82e0d1de4552fa 190 Gene3D G3DSA:3.10.450.50 26 190 8.2E-24 T 14-10-2018 RY45_02610 fea5ec6db7d1c3e26b82e0d1de4552fa 190 SUPERFAMILY SSF54427 128 187 2.88E-6 T 14-10-2018 IPR032710 NTF2-like domain superfamily RY45_05480 25c47196034ef8e987869e2a96aebd6b 384 Pfam PF17178 Membrane-associated sensor 27 218 8.4E-58 T 14-10-2018 IPR033444 Membrane-associated sensor MASE5 RY45_05480 25c47196034ef8e987869e2a96aebd6b 384 Gene3D G3DSA:3.30.70.270 210 383 3.5E-53 T 14-10-2018 RY45_05480 25c47196034ef8e987869e2a96aebd6b 384 SMART SM00267 208 383 1.6E-57 T 14-10-2018 IPR000160 GGDEF domain RY45_05480 25c47196034ef8e987869e2a96aebd6b 384 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 215 382 2.8E-45 T 14-10-2018 IPR000160 GGDEF domain RY45_05480 25c47196034ef8e987869e2a96aebd6b 384 SUPERFAMILY SSF55073 224 382 2.43E-45 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_05480 25c47196034ef8e987869e2a96aebd6b 384 Pfam PF00990 Diguanylate cyclase, GGDEF domain 219 378 1.5E-45 T 14-10-2018 IPR000160 GGDEF domain RY45_19345 9a2f612ad840112f0dfd15a3088dd94d 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 64 2.0E-24 T 14-10-2018 IPR014318 Phage shock protein, PspG RY45_19345 9a2f612ad840112f0dfd15a3088dd94d 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 63 9.5E-19 T 14-10-2018 IPR014318 Phage shock protein, PspG RY45_07975 2c8d981d5e0ab4117426565687832a61 211 Pfam PF13460 NAD(P)H-binding 8 150 1.3E-7 T 14-10-2018 IPR016040 NAD(P)-binding domain RY45_07975 2c8d981d5e0ab4117426565687832a61 211 SUPERFAMILY SSF51735 1 198 9.38E-40 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_07975 2c8d981d5e0ab4117426565687832a61 211 Gene3D G3DSA:3.40.50.720 1 211 2.1E-53 T 14-10-2018 RY45_09435 6f3385d19a1707161935238e4cf480c2 249 Pfam PF08241 Methyltransferase domain 43 134 5.1E-21 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RY45_09435 6f3385d19a1707161935238e4cf480c2 249 SUPERFAMILY SSF53335 5 176 7.74E-35 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RY45_09435 6f3385d19a1707161935238e4cf480c2 249 Gene3D G3DSA:3.40.50.150 5 238 2.8E-42 T 14-10-2018 RY45_18715 e9ebe06bb524655bff6395601bd0c900 249 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 238 1.7E-47 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RY45_18715 e9ebe06bb524655bff6395601bd0c900 249 SUPERFAMILY SSF52096 3 249 1.83E-69 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_18715 e9ebe06bb524655bff6395601bd0c900 249 Gene3D G3DSA:3.90.226.10 2 237 1.3E-67 T 14-10-2018 RY45_13420 6ad3ff9af38eca8cf0d448008991fae8 179 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 4.6E-62 T 14-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA RY45_13420 6ad3ff9af38eca8cf0d448008991fae8 179 Gene3D G3DSA:3.40.50.1820 1 179 4.9E-15 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_13420 6ad3ff9af38eca8cf0d448008991fae8 179 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 48.158 T 14-10-2018 IPR022987 Uncharacterised protein family UPF0227 RY45_15840 bb0e1649b95067db54bb55b2dcc2d566 192 Pfam PF11749 Protein of unknown function (DUF3305) 29 139 3.7E-18 T 14-10-2018 IPR021736 Protein of unknown function DUF3305 RY45_12975 45cc8b92f90a0ce93a381c5af2061f8b 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.213 T 14-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup RY45_12975 45cc8b92f90a0ce93a381c5af2061f8b 622 TIGRFAM TIGR00794 kup: potassium uptake protein 100 549 8.0E-179 T 14-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 RY45_12975 45cc8b92f90a0ce93a381c5af2061f8b 622 Pfam PF02705 K+ potassium transporter 14 544 3.8E-206 T 14-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 RY45_17760 2ccef593a963812750f320e73c8b7251 222 Gene3D G3DSA:3.10.450.350 128 210 2.1E-8 T 14-10-2018 RY45_17760 2ccef593a963812750f320e73c8b7251 222 Pfam PF04225 Opacity-associated protein A LysM-like domain 139 217 3.1E-12 T 14-10-2018 IPR007340 Opacity-associated protein A RY45_00030 1a2b63bee7f335f45b8e6711540b9286 234 Pfam PF13280 WYL domain 139 226 3.5E-17 T 14-10-2018 IPR026881 WYL domain RY45_00030 1a2b63bee7f335f45b8e6711540b9286 234 Pfam PF08279 HTH domain 6 59 6.1E-17 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 RY45_00030 1a2b63bee7f335f45b8e6711540b9286 234 Gene3D G3DSA:1.10.10.10 1 64 1.5E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_00030 1a2b63bee7f335f45b8e6711540b9286 234 SUPERFAMILY SSF46785 1 62 2.18E-11 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 Pfam PF13183 4Fe-4S dicluster domain 314 380 1.8E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 Gene3D G3DSA:1.10.1060.10 297 398 1.7E-6 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 Gene3D G3DSA:3.40.50.10420 137 296 4.2E-13 T 14-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 Pfam PF11870 Domain of unknown function (DUF3390) 388 475 7.4E-28 T 14-10-2018 IPR024569 4Fe-4S binding protein, C-terminal RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 SUPERFAMILY SSF100950 67 298 9.63E-40 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 21 439 1.4E-141 T 14-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 316 327 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 Pfam PF02589 LUD domain 72 297 2.7E-52 T 14-10-2018 IPR003741 LUD domain RY45_13280 55056ec4316ff12e6fa91df7593d917b 477 SUPERFAMILY SSF46548 290 392 5.76E-16 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RY45_21195 040ab593e9fd38bffd776a300dc4b8b2 171 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 115 1.6E-15 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_21195 040ab593e9fd38bffd776a300dc4b8b2 171 SUPERFAMILY SSF55083 2 101 9.02E-21 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_21195 040ab593e9fd38bffd776a300dc4b8b2 171 Gene3D G3DSA:3.30.70.560 2 143 9.9E-19 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RY45_09645 2d5c3014f8cdfa3c191bf3f2534f23fe 487 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.62 T 14-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RY45_09645 2d5c3014f8cdfa3c191bf3f2534f23fe 487 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 1.7E-128 T 14-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RY45_09645 2d5c3014f8cdfa3c191bf3f2534f23fe 487 Pfam PF00361 Proton-conducting membrane transporter 122 420 1.6E-76 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_06305 7e9b4db5cfc1f718075b2bb6b58a3cec 244 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 4.1E-101 T 14-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 RY45_06305 7e9b4db5cfc1f718075b2bb6b58a3cec 244 Pfam PF00696 Amino acid kinase family 11 219 2.2E-27 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RY45_06305 7e9b4db5cfc1f718075b2bb6b58a3cec 244 PIRSF PIRSF005650 4 244 8.7E-88 T 14-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 RY45_06305 7e9b4db5cfc1f718075b2bb6b58a3cec 244 SUPERFAMILY SSF53633 7 240 3.67E-71 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_06305 7e9b4db5cfc1f718075b2bb6b58a3cec 244 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 43.413 T 14-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 RY45_06305 7e9b4db5cfc1f718075b2bb6b58a3cec 244 Gene3D G3DSA:3.40.1160.10 3 243 1.1E-73 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RY45_02820 019edf2c1de7661d01b2c6531096d8ed 81 Pfam PF12292 Protein of unknown function (DUF3624) 1 73 1.1E-24 T 14-10-2018 IPR022072 Protein of unknown function DUF3624 RY45_12405 7dafbd14a4f5f9a3afb3cff1da2f9afa 418 Pfam PF14281 PD-(D/E)XK nuclease superfamily 42 215 6.9E-29 T 14-10-2018 IPR029470 PD-(D/E)XK nuclease superfamily 4 RY45_08695 9e120afa273f3bfcb3e1e2118826551c 379 SMART SM00267 216 376 3.8E-37 T 14-10-2018 IPR000160 GGDEF domain RY45_08695 9e120afa273f3bfcb3e1e2118826551c 379 Gene3D G3DSA:3.30.70.270 220 376 4.5E-46 T 14-10-2018 RY45_08695 9e120afa273f3bfcb3e1e2118826551c 379 Pfam PF00990 Diguanylate cyclase, GGDEF domain 227 372 5.4E-32 T 14-10-2018 IPR000160 GGDEF domain RY45_08695 9e120afa273f3bfcb3e1e2118826551c 379 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 223 374 6.2E-33 T 14-10-2018 IPR000160 GGDEF domain RY45_08695 9e120afa273f3bfcb3e1e2118826551c 379 SUPERFAMILY SSF55073 232 375 2.12E-36 T 14-10-2018 IPR029787 Nucleotide cyclase RY45_09120 093e57b2b69c6097af7b7f0f77dfdc75 349 Pfam PF04245 37-kD nucleoid-associated bacterial protein 9 342 4.5E-93 T 14-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 RY45_14655 f0dc2adde6ae87a824adce8f2873b90c 157 Pfam PF02391 MoaE protein 13 125 1.8E-37 T 14-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RY45_14655 f0dc2adde6ae87a824adce8f2873b90c 157 SUPERFAMILY SSF54690 9 155 3.27E-52 T 14-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RY45_14655 f0dc2adde6ae87a824adce8f2873b90c 157 Gene3D G3DSA:3.90.1170.40 6 155 1.2E-54 T 14-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RY45_14600 a3acbbce00270075d6d2ab1e2a1cb5a5 172 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 22 164 6.6E-45 T 14-10-2018 IPR018639 Domain of unknown function DUF2062 RY45_16770 e54fe122b0ddcf90abbeaf8a81a961f3 155 SUPERFAMILY SSF75217 1 153 1.41E-49 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_16770 e54fe122b0ddcf90abbeaf8a81a961f3 155 PIRSF PIRSF004505 1 154 2.1E-40 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RY45_16770 e54fe122b0ddcf90abbeaf8a81a961f3 155 Gene3D G3DSA:3.40.1280.10 1 155 2.5E-51 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_16770 e54fe122b0ddcf90abbeaf8a81a961f3 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 27.392 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RY45_16770 e54fe122b0ddcf90abbeaf8a81a961f3 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 153 1.9E-46 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RY45_16770 e54fe122b0ddcf90abbeaf8a81a961f3 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 1.9E-80 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RY45_16195 0a9225713ae73f0d3b21f804a0d76e6b 316 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RY45_16195 0a9225713ae73f0d3b21f804a0d76e6b 316 SUPERFAMILY SSF51569 1 315 2.83E-114 T 14-10-2018 RY45_16195 0a9225713ae73f0d3b21f804a0d76e6b 316 Hamap MF_00492 Transaldolase [tal]. 2 316 51.715 T 14-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RY45_16195 0a9225713ae73f0d3b21f804a0d76e6b 316 TIGRFAM TIGR00874 talAB: transaldolase 4 315 8.5E-158 T 14-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RY45_16195 0a9225713ae73f0d3b21f804a0d76e6b 316 Gene3D G3DSA:3.20.20.70 2 316 7.9E-141 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_16195 0a9225713ae73f0d3b21f804a0d76e6b 316 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 311 7.9E-101 T 14-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RY45_16195 0a9225713ae73f0d3b21f804a0d76e6b 316 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RY45_04325 c786a76a59e05e174c78eea7d34e8276 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 214 4.7E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_04325 c786a76a59e05e174c78eea7d34e8276 221 Gene3D G3DSA:1.10.3720.10 1 219 3.5E-53 T 14-10-2018 IPR035906 MetI-like superfamily RY45_04325 c786a76a59e05e174c78eea7d34e8276 221 SUPERFAMILY SSF161098 14 200 6.41E-42 T 14-10-2018 IPR035906 MetI-like superfamily RY45_04325 c786a76a59e05e174c78eea7d34e8276 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.4E-25 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RY45_19600 8e0c49d588da535efbf0674a0f094d8f 126 SUPERFAMILY SSF101756 11 112 1.57E-32 T 14-10-2018 IPR036700 Bacterial OB-fold superfamily RY45_19600 8e0c49d588da535efbf0674a0f094d8f 126 Gene3D G3DSA:2.40.50.200 13 115 6.7E-33 T 14-10-2018 IPR036700 Bacterial OB-fold superfamily RY45_19600 8e0c49d588da535efbf0674a0f094d8f 126 Pfam PF04076 Bacterial OB fold (BOF) protein 22 112 1.9E-27 T 14-10-2018 IPR005220 Bacterial OB-fold RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00097 Anthranilate synthase component II signature 53 62 2.3E-34 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00097 Anthranilate synthase component II signature 167 180 2.3E-34 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00097 Anthranilate synthase component II signature 80 91 2.3E-34 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00097 Anthranilate synthase component II signature 125 137 2.3E-34 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00097 Anthranilate synthase component II signature 105 113 2.3E-34 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00097 Anthranilate synthase component II signature 4 18 2.3E-34 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 Pfam PF00117 Glutamine amidotransferase class-I 6 188 1.1E-43 T 14-10-2018 IPR017926 Glutamine amidotransferase RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 187 1.5E-52 T 14-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 Gene3D G3DSA:3.40.50.880 2 191 3.8E-57 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 167 180 5.3E-14 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 5.3E-14 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 80 91 5.3E-14 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 50 64 1.7E-5 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 80 96 1.7E-5 T 14-10-2018 RY45_15115 1e958467a7a03bc435e3ddfe20ac71d2 199 SUPERFAMILY SSF52317 3 189 8.87E-47 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like RY45_08360 5179bdfede1804b6fa480670d61786e7 293 SUPERFAMILY SSF103481 170 273 8.63E-16 T 14-10-2018 RY45_08360 5179bdfede1804b6fa480670d61786e7 293 Pfam PF00892 EamA-like transporter family 138 269 3.2E-19 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_08360 5179bdfede1804b6fa480670d61786e7 293 Pfam PF00892 EamA-like transporter family 2 128 2.6E-13 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_08360 5179bdfede1804b6fa480670d61786e7 293 SUPERFAMILY SSF103481 37 131 9.55E-9 T 14-10-2018 RY45_00135 45ecbc535449d03f5c319d74190ea3b9 169 SMART SM00458 39 153 4.8E-10 T 14-10-2018 IPR000772 Ricin B, lectin domain RY45_00135 45ecbc535449d03f5c319d74190ea3b9 169 SUPERFAMILY SSF50370 47 152 3.01E-15 T 14-10-2018 IPR035992 Ricin B-like lectins RY45_00135 45ecbc535449d03f5c319d74190ea3b9 169 Pfam PF00652 Ricin-type beta-trefoil lectin domain 49 150 5.8E-10 T 14-10-2018 IPR000772 Ricin B, lectin domain RY45_00135 45ecbc535449d03f5c319d74190ea3b9 169 Gene3D G3DSA:2.80.10.50 117 166 3.8E-7 T 14-10-2018 RY45_00135 45ecbc535449d03f5c319d74190ea3b9 169 Gene3D G3DSA:2.80.10.50 37 116 7.3E-5 T 14-10-2018 RY45_09755 040c8b5a5770d30920298e8d3f50fdda 299 Gene3D G3DSA:3.20.20.100 1 299 8.3E-105 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RY45_09755 040c8b5a5770d30920298e8d3f50fdda 299 SUPERFAMILY SSF51430 8 296 3.93E-70 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RY45_09755 040c8b5a5770d30920298e8d3f50fdda 299 PRINTS PR00069 Aldo-keto reductase signature 113 131 6.6E-6 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RY45_09755 040c8b5a5770d30920298e8d3f50fdda 299 PRINTS PR00069 Aldo-keto reductase signature 144 161 6.6E-6 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RY45_09755 040c8b5a5770d30920298e8d3f50fdda 299 Pfam PF00248 Aldo/keto reductase family 17 292 1.2E-57 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain RY45_02520 cc687c56904cd71737082a3ea04e1419 258 Gene3D G3DSA:3.40.50.720 2 248 9.4E-90 T 14-10-2018 RY45_02520 cc687c56904cd71737082a3ea04e1419 258 SUPERFAMILY SSF69572 4 245 6.15E-86 T 14-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RY45_02520 cc687c56904cd71737082a3ea04e1419 258 Pfam PF00899 ThiF family 10 248 1.5E-62 T 14-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RY45_05420 082f712e4f54f6438eea4f87d6dc0ab7 98 SUPERFAMILY SSF141488 23 96 1.12E-16 T 14-10-2018 IPR036328 C-type lysozyme inhibitor superfamily RY45_05420 082f712e4f54f6438eea4f87d6dc0ab7 98 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 29 91 3.2E-10 T 14-10-2018 IPR018660 C-type lysozyme inhibitor RY45_05420 082f712e4f54f6438eea4f87d6dc0ab7 98 Gene3D G3DSA:2.40.128.200 23 98 3.3E-14 T 14-10-2018 IPR036328 C-type lysozyme inhibitor superfamily RY45_00535 a8e81c72bdb4e06925c259ad6bac7288 800 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 173 462 5.1E-79 T 14-10-2018 IPR008766 Replication gene A protein GO:0006260 RY45_10105 c1cd09e6fd81eb03cefe20b9e418955a 134 Pfam PF04024 PspC domain 9 66 4.6E-18 T 14-10-2018 IPR007168 Phage shock protein, PspC, N-terminal RY45_10105 c1cd09e6fd81eb03cefe20b9e418955a 134 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 9 134 1.1E-46 T 14-10-2018 IPR014320 Phage shock protein, PspC RY45_06490 c0233621545e2ed62ceeb51a70073660 193 SUPERFAMILY SSF48498 80 192 6.68E-15 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RY45_06490 c0233621545e2ed62ceeb51a70073660 193 SUPERFAMILY SSF46689 3 72 1.84E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RY45_06490 c0233621545e2ed62ceeb51a70073660 193 Gene3D G3DSA:1.10.357.10 49 190 6.4E-20 T 14-10-2018 RY45_06490 c0233621545e2ed62ceeb51a70073660 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 1.1E-8 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RY45_06490 c0233621545e2ed62ceeb51a70073660 193 Gene3D G3DSA:1.10.10.60 1 47 3.3E-19 T 14-10-2018 RY45_20165 ad42d94cf82c07fa51967d6ddd75a81b 284 SUPERFAMILY SSF53955 6 154 1.83E-30 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_20165 ad42d94cf82c07fa51967d6ddd75a81b 284 Pfam PF01464 Transglycosylase SLT domain 28 132 3.9E-19 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 RY45_20165 ad42d94cf82c07fa51967d6ddd75a81b 284 Gene3D G3DSA:1.10.530.10 15 163 2.7E-27 T 14-10-2018 RY45_02085 c07b2044cb0c8e382336af7be5177509 199 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 189 1.5E-29 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RY45_02085 c07b2044cb0c8e382336af7be5177509 199 Pfam PF01914 MarC family integral membrane protein 4 191 4.5E-55 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RY45_00385 c8cbbb4c58bf6f8ea47297e1ea06f533 392 Pfam PF17482 Phage tail sheath C-terminal domain 275 375 1.7E-15 T 14-10-2018 IPR020287 Tail sheath protein, C-terminal domain RY45_00385 c8cbbb4c58bf6f8ea47297e1ea06f533 392 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 109 274 8.5E-21 T 14-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain RY45_12675 936bc5d55e71a6cdf5f414773298db20 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 63 2.0E-14 T 14-10-2018 IPR009491 Protein of unknown function DUF1107 RY45_12675 936bc5d55e71a6cdf5f414773298db20 68 Gene3D G3DSA:3.30.1910.10 1 64 1.4E-29 T 14-10-2018 RY45_12675 936bc5d55e71a6cdf5f414773298db20 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 3.9E-28 T 14-10-2018 IPR009491 Protein of unknown function DUF1107 RY45_09830 7fd4f6d7826c8cb076c96f80b2793cfe 197 SUPERFAMILY SSF142695 3 173 2.09E-67 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RY45_09830 7fd4f6d7826c8cb076c96f80b2793cfe 197 Pfam PF00925 GTP cyclohydrolase II 8 171 2.8E-69 T 14-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RY45_09830 7fd4f6d7826c8cb076c96f80b2793cfe 197 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 3.5E-82 T 14-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RY45_09830 7fd4f6d7826c8cb076c96f80b2793cfe 197 Gene3D G3DSA:3.40.50.10990 3 174 6.5E-75 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RY45_09830 7fd4f6d7826c8cb076c96f80b2793cfe 197 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 2 197 45.071 T 14-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RY45_12530 1b3b0cd84b1502b3e4b3f3482f166ee3 269 Gene3D G3DSA:3.40.390.10 147 264 5.2E-39 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RY45_12530 1b3b0cd84b1502b3e4b3f3482f166ee3 269 Pfam PF06167 Glucose-regulated metallo-peptidase M90 25 247 1.8E-75 T 14-10-2018 IPR010384 MtfA family RY45_12530 1b3b0cd84b1502b3e4b3f3482f166ee3 269 Gene3D G3DSA:1.10.472.150 23 146 5.7E-36 T 14-10-2018 RY45_12530 1b3b0cd84b1502b3e4b3f3482f166ee3 269 SUPERFAMILY SSF55486 42 249 4.32E-35 T 14-10-2018 RY45_04310 41428ec4890a915d919ca15f63814267 278 Gene3D G3DSA:3.40.190.10 29 252 2.4E-78 T 14-10-2018 RY45_04310 41428ec4890a915d919ca15f63814267 278 SMART SM00062 37 259 9.4E-69 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_04310 41428ec4890a915d919ca15f63814267 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 256 9.3E-52 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_04310 41428ec4890a915d919ca15f63814267 278 SUPERFAMILY SSF53850 1 257 4.83E-65 T 14-10-2018 RY45_04310 41428ec4890a915d919ca15f63814267 278 Gene3D G3DSA:3.40.190.10 127 217 2.4E-78 T 14-10-2018 RY45_13065 266be3b0a372616695a1b3b7792cf84f 262 Gene3D G3DSA:3.40.50.300 4 257 3.9E-48 T 14-10-2018 RY45_13065 266be3b0a372616695a1b3b7792cf84f 262 Pfam PF00005 ABC transporter 26 175 2.9E-16 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RY45_13065 266be3b0a372616695a1b3b7792cf84f 262 SMART SM00382 35 222 1.2E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain RY45_13065 266be3b0a372616695a1b3b7792cf84f 262 SUPERFAMILY SSF52540 21 235 1.13E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_14605 8c8d21b2c82591167e72408a7fa24cc7 164 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 24 155 3.7E-32 T 14-10-2018 IPR018639 Domain of unknown function DUF2062 RY45_20265 22d6168880628ca9fc750606e7b88055 397 Pfam PF07559 Flagellar basal body protein FlaE 173 278 1.9E-20 T 14-10-2018 IPR011491 Flagellar hook protein FlgE RY45_20265 22d6168880628ca9fc750606e7b88055 397 Gene3D G3DSA:2.60.98.20 144 279 1.3E-31 T 14-10-2018 IPR037058 Flagellar hook protein FlgE superfamily RY45_20265 22d6168880628ca9fc750606e7b88055 397 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 331 393 5.1E-16 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RY45_20265 22d6168880628ca9fc750606e7b88055 397 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 379 9.5E-94 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RY45_20265 22d6168880628ca9fc750606e7b88055 397 Pfam PF00460 Flagella basal body rod protein 4 33 2.2E-8 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RY45_20265 22d6168880628ca9fc750606e7b88055 397 SUPERFAMILY SSF117143 73 358 1.7E-80 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RY45_17505 50b232757be807219e41c972e4b1e4ec 252 Pfam PF01553 Acyltransferase 82 184 6.9E-13 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_17505 50b232757be807219e41c972e4b1e4ec 252 SUPERFAMILY SSF69593 41 244 1.31E-24 T 14-10-2018 RY45_17505 50b232757be807219e41c972e4b1e4ec 252 SMART SM00563 84 192 1.6E-21 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RY45_13675 01f228b5df7d748b67c731795a0585e9 350 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 2 348 27.341 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 RY45_13675 01f228b5df7d748b67c731795a0585e9 350 Pfam PF03116 NQR2, RnfD, RnfE family 4 346 8.2E-102 T 14-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 RY45_13675 01f228b5df7d748b67c731795a0585e9 350 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 7 346 4.5E-132 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 RY45_11165 04b39f13dff6178f187d1da3d06743d2 267 Pfam PF03609 PTS system sorbose-specific iic component 3 241 9.5E-68 T 14-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 RY45_00705 5fa6fb9650393170c7278b45b8d44d1e 82 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 46 2.0E-20 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RY45_00705 5fa6fb9650393170c7278b45b8d44d1e 82 Pfam PF02416 mttA/Hcf106 family 4 54 1.1E-13 T 14-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RY45_00705 5fa6fb9650393170c7278b45b8d44d1e 82 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 82 23.991 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RY45_16180 61185531c8094b0bf5a9b6a09bd0d7b8 328 Pfam PF01882 Protein of unknown function DUF58 211 287 1.7E-8 T 14-10-2018 IPR002881 Domain of unknown function DUF58 RY45_00800 8e4e638ddf7969845a186d65ebb49107 277 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 273 1.2E-110 T 14-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 RY45_00800 8e4e638ddf7969845a186d65ebb49107 277 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 83 2.4E-28 T 14-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 RY45_00800 8e4e638ddf7969845a186d65ebb49107 277 Pfam PF01694 Rhomboid family 135 272 2.5E-29 T 14-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RY45_00800 8e4e638ddf7969845a186d65ebb49107 277 Gene3D G3DSA:1.20.1540.10 94 273 7.3E-53 T 14-10-2018 IPR035952 Rhomboid-like superfamily RY45_00800 8e4e638ddf7969845a186d65ebb49107 277 SUPERFAMILY SSF144091 96 272 1.83E-38 T 14-10-2018 RY45_00800 8e4e638ddf7969845a186d65ebb49107 277 Gene3D G3DSA:3.30.70.2350 1 67 5.6E-21 T 14-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily RY45_16185 8fe254504853aa68e77a8195db937969 657 SUPERFAMILY SSF54001 274 593 2.94E-54 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RY45_16185 8fe254504853aa68e77a8195db937969 657 SMART SM00460 397 468 1.3E-21 T 14-10-2018 IPR002931 Transglutaminase-like RY45_16185 8fe254504853aa68e77a8195db937969 657 Gene3D G3DSA:3.10.620.30 335 516 3.2E-20 T 14-10-2018 RY45_16185 8fe254504853aa68e77a8195db937969 657 Pfam PF01841 Transglutaminase-like superfamily 365 466 8.8E-22 T 14-10-2018 IPR002931 Transglutaminase-like RY45_16185 8fe254504853aa68e77a8195db937969 657 Pfam PF11992 Domain of unknown function (DUF3488) 11 323 1.7E-73 T 14-10-2018 IPR021878 Protein of unknown function DUF3488 RY45_10955 b1e8117d49487c3910bc90fd5470e031 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 9.0E-69 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_10955 b1e8117d49487c3910bc90fd5470e031 251 SUPERFAMILY SSF51351 1 247 2.88E-89 T 14-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_10955 b1e8117d49487c3910bc90fd5470e031 251 Gene3D G3DSA:3.20.20.70 1 251 2.6E-93 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_10955 b1e8117d49487c3910bc90fd5470e031 251 Pfam PF00121 Triosephosphate isomerase 5 246 3.3E-85 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_10955 b1e8117d49487c3910bc90fd5470e031 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 57.445 T 14-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_10955 b1e8117d49487c3910bc90fd5470e031 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 14-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RY45_08270 028ae816bfca74b4a1be8798c6343a6b 282 SUPERFAMILY SSF117396 1 262 6.41E-71 T 14-10-2018 IPR036520 UPF0759 superfamily RY45_08270 028ae816bfca74b4a1be8798c6343a6b 282 Gene3D G3DSA:3.20.20.410 1 269 4.2E-43 T 14-10-2018 IPR036520 UPF0759 superfamily RY45_08270 028ae816bfca74b4a1be8798c6343a6b 282 Pfam PF01904 Protein of unknown function DUF72 24 258 1.7E-57 T 14-10-2018 IPR002763 Protein of unknown function DUF72 RY45_07080 dcf9b0716e739173730d9c4c710442bc 900 PIRSF PIRSF034586 1 900 2.5E-288 T 14-10-2018 IPR017030 Virulence effector, SrfC RY45_07080 dcf9b0716e739173730d9c4c710442bc 900 Pfam PF10139 Putative bacterial virulence factor 22 894 5.6E-300 T 14-10-2018 IPR017030 Virulence effector, SrfC RY45_20815 3601de87490cb63b8979b6bb25c9cad3 348 Gene3D G3DSA:3.40.190.10 60 311 1.0E-36 T 14-10-2018 RY45_20815 3601de87490cb63b8979b6bb25c9cad3 348 Gene3D G3DSA:3.40.190.10 134 315 1.0E-36 T 14-10-2018 RY45_20815 3601de87490cb63b8979b6bb25c9cad3 348 SUPERFAMILY SSF53850 44 341 6.42E-48 T 14-10-2018 RY45_20815 3601de87490cb63b8979b6bb25c9cad3 348 Pfam PF13343 Bacterial extracellular solute-binding protein 84 305 2.6E-32 T 14-10-2018 RY45_08990 80fa9075ca4ed26164a80cb35356751a 37 Pfam PF08173 Membrane bound YbgT-like protein 1 27 5.9E-13 T 14-10-2018 IPR012994 Membrane bound YbgT-like RY45_08990 80fa9075ca4ed26164a80cb35356751a 37 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 27 2.0E-8 T 14-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 RY45_13550 9e01743d6f03990d69dee8d172276a85 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 65 2.9E-12 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RY45_13550 9e01743d6f03990d69dee8d172276a85 303 SUPERFAMILY SSF161098 100 284 3.4E-24 T 14-10-2018 IPR035906 MetI-like superfamily RY45_13550 9e01743d6f03990d69dee8d172276a85 303 Gene3D G3DSA:1.10.3720.10 96 299 4.4E-18 T 14-10-2018 IPR035906 MetI-like superfamily RY45_13550 9e01743d6f03990d69dee8d172276a85 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 301 2.5E-26 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_17880 8801be1368a30fe5eab38036bb8bbc1e 69 Pfam PF06004 Bacterial protein of unknown function (DUF903) 20 68 1.9E-21 T 14-10-2018 IPR010305 Protein of unknown function DUF903 RY45_17880 8801be1368a30fe5eab38036bb8bbc1e 69 SUPERFAMILY SSF50182 18 68 2.73E-17 T 14-10-2018 IPR010920 LSM domain superfamily RY45_17880 8801be1368a30fe5eab38036bb8bbc1e 69 Gene3D G3DSA:2.30.30.100 17 69 8.0E-24 T 14-10-2018 RY45_13840 922509037038cd679773a9be889791a6 541 SUPERFAMILY SSF53649 267 489 4.86E-17 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_13840 922509037038cd679773a9be889791a6 541 Gene3D G3DSA:3.40.720.10 213 541 1.2E-85 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_13840 922509037038cd679773a9be889791a6 541 Pfam PF08019 Domain of unknown function (DUF1705) 54 206 4.7E-51 T 14-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 RY45_13840 922509037038cd679773a9be889791a6 541 Pfam PF00884 Sulfatase 233 519 4.4E-44 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RY45_20280 c87222872ea3fe6ee5c8a0159ed2fd69 129 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 127 1.2E-28 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RY45_20280 c87222872ea3fe6ee5c8a0159ed2fd69 129 PIRSF PIRSF002889 1 129 1.2E-32 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RY45_08770 927d93cf913b9b5397ba50aea5f5033e 373 SUPERFAMILY SSF56935 21 373 5.19E-54 T 14-10-2018 RY45_08770 927d93cf913b9b5397ba50aea5f5033e 373 PRINTS PR00183 E.coli/Salmonella-type porin signature 260 277 9.4E-6 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 RY45_08770 927d93cf913b9b5397ba50aea5f5033e 373 PRINTS PR00183 E.coli/Salmonella-type porin signature 21 37 9.4E-6 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 RY45_08770 927d93cf913b9b5397ba50aea5f5033e 373 PRINTS PR00183 E.coli/Salmonella-type porin signature 289 308 9.4E-6 T 14-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 RY45_08770 927d93cf913b9b5397ba50aea5f5033e 373 Gene3D G3DSA:2.40.160.10 21 373 2.0E-67 T 14-10-2018 IPR023614 Porin domain superfamily RY45_08770 927d93cf913b9b5397ba50aea5f5033e 373 Pfam PF13609 Gram-negative porin 7 354 2.7E-31 T 14-10-2018 RY45_20580 4ab53a60aa901a811c91c1bed9a1a86d 447 Gene3D G3DSA:3.30.2290.10 3 233 6.9E-82 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal RY45_20580 4ab53a60aa901a811c91c1bed9a1a86d 447 Pfam PF01523 Putative modulator of DNA gyrase 33 322 7.1E-56 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 RY45_20580 4ab53a60aa901a811c91c1bed9a1a86d 447 SUPERFAMILY SSF111283 13 446 1.31E-124 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 RY45_03245 1a70b2772840e04858d4ae959955008c 150 Pfam PF00583 Acetyltransferase (GNAT) family 37 126 1.9E-13 T 14-10-2018 IPR000182 GNAT domain RY45_03245 1a70b2772840e04858d4ae959955008c 150 Gene3D G3DSA:3.40.630.30 4 150 5.0E-31 T 14-10-2018 RY45_03245 1a70b2772840e04858d4ae959955008c 150 SUPERFAMILY SSF55729 6 149 3.09E-28 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_18660 a33fce6fb23cc161e99375f7442a6649 103 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 19 96 6.2E-25 T 14-10-2018 IPR011846 Cyd operon protein YbgE RY45_21335 463d08af86cf8fc0a0c9086cd9e19093 467 Pfam PF03606 C4-dicarboxylate anaerobic carrier 6 461 3.7E-131 T 14-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 Pfam PF03379 CcmB protein 6 219 5.2E-88 T 14-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 218 2.0E-88 T 14-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 PIRSF PIRSF002764 1 222 1.6E-85 T 14-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 9.7E-70 T 14-10-2018 RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 9.7E-70 T 14-10-2018 RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 9.7E-70 T 14-10-2018 RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 9.7E-70 T 14-10-2018 RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 9.7E-70 T 14-10-2018 RY45_07340 97cd820721a71fe6d127b7f1415acb8d 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 158 177 9.7E-70 T 14-10-2018 RY45_06250 33dfe744ce5641ad3e5a601002e64a7f 257 SUPERFAMILY SSF55120 12 252 2.72E-60 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_06250 33dfe744ce5641ad3e5a601002e64a7f 257 Gene3D G3DSA:3.30.2350.10 4 238 1.5E-60 T 14-10-2018 RY45_06250 33dfe744ce5641ad3e5a601002e64a7f 257 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_06250 33dfe744ce5641ad3e5a601002e64a7f 257 Pfam PF00849 RNA pseudouridylate synthase 23 183 2.5E-34 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RY45_18025 181d5d49747f385d1dc6a7f29e6be3c1 378 Pfam PF12698 ABC-2 family transporter protein 20 357 1.1E-33 T 14-10-2018 RY45_05770 1428a0ee5a7d7328750d1ba740b258f6 298 SUPERFAMILY SSF103481 182 284 7.85E-13 T 14-10-2018 RY45_05770 1428a0ee5a7d7328750d1ba740b258f6 298 SUPERFAMILY SSF103481 38 137 4.97E-8 T 14-10-2018 RY45_05770 1428a0ee5a7d7328750d1ba740b258f6 298 Pfam PF00892 EamA-like transporter family 13 134 3.8E-7 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_05770 1428a0ee5a7d7328750d1ba740b258f6 298 Pfam PF00892 EamA-like transporter family 147 279 1.9E-20 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_09910 70e2dd5ae3cd87502dd125812651f4ba 445 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 21 407 7.9E-112 T 14-10-2018 IPR012656 Conserved hypothetical protein CHP02421, QEGLA RY45_09910 70e2dd5ae3cd87502dd125812651f4ba 445 Pfam PF08014 Domain of unknown function (DUF1704) 40 411 5.0E-130 T 14-10-2018 IPR012548 Protein of unknown function DUF1704 RY45_09910 70e2dd5ae3cd87502dd125812651f4ba 445 SMART SM01154 38 415 8.6E-184 T 14-10-2018 IPR012548 Protein of unknown function DUF1704 RY45_06265 a4eaca8d6a0c23c35ec76003a262d4c4 323 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 83 217 1.5E-44 T 14-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 RY45_01315 a1f35d5669fa14fa780ce6e0f6bcacce 151 SUPERFAMILY SSF51197 1 144 3.84E-23 T 14-10-2018 RY45_01315 a1f35d5669fa14fa780ce6e0f6bcacce 151 Gene3D G3DSA:2.60.120.370 1 144 1.1E-15 T 14-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily RY45_01315 a1f35d5669fa14fa780ce6e0f6bcacce 151 Pfam PF04074 Domain of unknown function (DUF386) 4 141 1.1E-23 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family RY45_16865 5e659243b0c0f0f37b9205798f98140b 167 Pfam PF13508 Acetyltransferase (GNAT) domain 51 129 2.0E-10 T 14-10-2018 IPR000182 GNAT domain RY45_16865 5e659243b0c0f0f37b9205798f98140b 167 Gene3D G3DSA:3.40.630.30 1 166 6.4E-49 T 14-10-2018 RY45_16865 5e659243b0c0f0f37b9205798f98140b 167 SUPERFAMILY SSF55729 1 143 2.44E-27 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_02500 2d02a9ec6054aa03d1acea498fcedb33 137 Pfam PF03994 Domain of Unknown Function (DUF350) 18 71 6.0E-15 T 14-10-2018 IPR007140 Protein of unknown function DUF350 RY45_02500 2d02a9ec6054aa03d1acea498fcedb33 137 Pfam PF03994 Domain of Unknown Function (DUF350) 83 135 9.7E-11 T 14-10-2018 IPR007140 Protein of unknown function DUF350 RY45_14445 24e17fc9b735085d73cf41b589fa9413 335 Pfam PF14351 Domain of unknown function (DUF4401) 27 329 3.3E-68 T 14-10-2018 IPR025513 Domain of unknown function DUF4401 RY45_05905 b9991ccb9b29c86b79ca3fff788bd6b9 159 Pfam PF11086 Protein of unknown function (DUF2878) 4 146 1.6E-30 T 14-10-2018 IPR021306 Protein of unknown function DUF2878 RY45_14415 72561e4a83c893e19fcb821bf42dd3c0 80 SUPERFAMILY SSF46785 1 70 8.85E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_14415 72561e4a83c893e19fcb821bf42dd3c0 80 Pfam PF09012 FeoC like transcriptional regulator 2 67 4.8E-24 T 14-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC RY45_06580 9510ddd133f6fc1529a01253426388e1 705 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 704 9.5E-199 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 RY45_06580 9510ddd133f6fc1529a01253426388e1 705 ProSitePatterns PS00850 Glycine radical domain signature. 675 683 - T 14-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RY45_06580 9510ddd133f6fc1529a01253426388e1 705 Gene3D G3DSA:3.20.70.20 121 686 8.4E-228 T 14-10-2018 RY45_06580 9510ddd133f6fc1529a01253426388e1 705 SUPERFAMILY SSF51998 121 686 6.87E-194 T 14-10-2018 RY45_06580 9510ddd133f6fc1529a01253426388e1 705 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 704 1.1E-178 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 RY45_06580 9510ddd133f6fc1529a01253426388e1 705 Pfam PF03477 ATP cone domain 4 89 2.0E-20 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RY45_10005 476e5df290dda5275fb00556010ef193 156 Pfam PF05433 Glycine zipper 2TM domain 61 99 3.0E-11 T 14-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 RY45_13845 3007202610ffe96d479b3cce159af0e2 259 Pfam PF03988 Repeat of Unknown Function (DUF347) 193 248 7.7E-12 T 14-10-2018 IPR007136 Protein of unknown function DUF347 RY45_13845 3007202610ffe96d479b3cce159af0e2 259 Pfam PF03988 Repeat of Unknown Function (DUF347) 138 188 4.0E-16 T 14-10-2018 IPR007136 Protein of unknown function DUF347 RY45_13845 3007202610ffe96d479b3cce159af0e2 259 Pfam PF03988 Repeat of Unknown Function (DUF347) 18 67 2.4E-16 T 14-10-2018 IPR007136 Protein of unknown function DUF347 RY45_13845 3007202610ffe96d479b3cce159af0e2 259 Pfam PF03988 Repeat of Unknown Function (DUF347) 73 122 4.5E-15 T 14-10-2018 IPR007136 Protein of unknown function DUF347 RY45_19515 f349d87f227d55e4ecffd1198cfab363 153 PIRSF PIRSF006181 1 153 1.8E-50 T 14-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RY45_19515 f349d87f227d55e4ecffd1198cfab363 153 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 150 2.3E-52 T 14-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RY45_19515 f349d87f227d55e4ecffd1198cfab363 153 Gene3D G3DSA:3.90.960.10 1 152 4.7E-49 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RY45_19515 f349d87f227d55e4ecffd1198cfab363 153 SUPERFAMILY SSF55826 2 152 3.14E-37 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RY45_19515 f349d87f227d55e4ecffd1198cfab363 153 Pfam PF04073 Aminoacyl-tRNA editing domain 31 143 2.2E-24 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RY45_00050 a1d5224efe5225c94d4a24d362321a04 77 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 68 - T 14-10-2018 IPR010916 TonB box, conserved site RY45_04960 ac88bcc1dc06ca2fdb68eb84284d90b2 166 Pfam PF03887 YfbU domain 1 166 8.8E-63 T 14-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU RY45_04960 ac88bcc1dc06ca2fdb68eb84284d90b2 166 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 166 2.0E-38 T 14-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU RY45_04960 ac88bcc1dc06ca2fdb68eb84284d90b2 166 SUPERFAMILY SSF116960 1 166 2.22E-57 T 14-10-2018 RY45_04960 ac88bcc1dc06ca2fdb68eb84284d90b2 166 Gene3D G3DSA:1.10.287.680 1 53 1.1E-29 T 14-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily RY45_04960 ac88bcc1dc06ca2fdb68eb84284d90b2 166 Gene3D G3DSA:1.10.3190.10 54 166 1.8E-28 T 14-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily RY45_18955 2cd7c52e86936af17300effdcfb6a32f 162 Pfam PF06892 Phage regulatory protein CII (CP76) 11 159 6.2E-31 T 14-10-2018 IPR009679 Bacteriophage 186, CII RY45_16380 e725fa838b741fa855ff573313c9ee87 198 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 129 189 1.2E-14 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RY45_16380 e725fa838b741fa855ff573313c9ee87 198 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 10 188 6.3E-50 T 14-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase RY45_16380 e725fa838b741fa855ff573313c9ee87 198 Gene3D G3DSA:3.40.50.1000 81 198 6.4E-31 T 14-10-2018 IPR023214 HAD superfamily RY45_16380 e725fa838b741fa855ff573313c9ee87 198 Gene3D G3DSA:1.10.150.240 7 80 4.2E-18 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RY45_16380 e725fa838b741fa855ff573313c9ee87 198 SUPERFAMILY SSF56784 10 194 8.27E-52 T 14-10-2018 IPR036412 HAD-like superfamily RY45_16380 e725fa838b741fa855ff573313c9ee87 198 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 189 5.0E-32 T 14-10-2018 RY45_08640 f3ce809c656daeca6f34398055729da2 374 Pfam PF11692 Protein of unknown function (DUF3289) 168 364 2.6E-28 T 14-10-2018 IPR017483 Conserved hypothetical protein CHP03034 RY45_01190 c29d1a2ceca5dc3d0cc03d2b017e4bcc 287 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 4 287 30.481 T 14-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 RY45_01190 c29d1a2ceca5dc3d0cc03d2b017e4bcc 287 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 66 88 - T 14-10-2018 IPR030470 UbiA prenyltransferase conserved site RY45_01190 c29d1a2ceca5dc3d0cc03d2b017e4bcc 287 Gene3D G3DSA:1.10.357.140 22 182 1.9E-40 T 14-10-2018 RY45_01190 c29d1a2ceca5dc3d0cc03d2b017e4bcc 287 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 11 286 7.5E-107 T 14-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 RY45_01190 c29d1a2ceca5dc3d0cc03d2b017e4bcc 287 Pfam PF01040 UbiA prenyltransferase family 27 269 4.6E-66 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RY45_16580 d1e1f13109f041934b8511ffe3553dee 406 Pfam PF06224 Winged helix DNA-binding domain 38 382 5.8E-89 T 14-10-2018 IPR009351 Protein of unknown function DUF1006 RY45_18125 c5a5bf886e4ac7a5df50d7a9bd8eedb5 171 Gene3D G3DSA:1.10.3730.20 9 115 3.3E-25 T 14-10-2018 RY45_18125 c5a5bf886e4ac7a5df50d7a9bd8eedb5 171 SUPERFAMILY SSF103481 12 114 1.05E-13 T 14-10-2018 RY45_18125 c5a5bf886e4ac7a5df50d7a9bd8eedb5 171 Pfam PF00893 Small Multidrug Resistance protein 11 100 1.1E-16 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RY45_14685 6490cb4b720c3444bc6152cf1813e006 291 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 223 234 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RY45_14685 6490cb4b720c3444bc6152cf1813e006 291 SUPERFAMILY SSF54862 93 276 5.12E-19 T 14-10-2018 RY45_14685 6490cb4b720c3444bc6152cf1813e006 291 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 21 277 8.5E-104 T 14-10-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family RY45_14685 6490cb4b720c3444bc6152cf1813e006 291 Pfam PF12801 4Fe-4S binding domain 172 210 1.2E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14685 6490cb4b720c3444bc6152cf1813e006 291 Pfam PF12801 4Fe-4S binding domain 82 125 7.7E-12 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RY45_14685 6490cb4b720c3444bc6152cf1813e006 291 Gene3D G3DSA:3.30.70.20 213 289 5.4E-7 T 14-10-2018 RY45_01335 2a0859375bfa97d55278fdba00604e04 323 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 4 312 3.1E-104 T 14-10-2018 IPR016833 Putative sodium bile acid cotransporter RY45_01335 2a0859375bfa97d55278fdba00604e04 323 Gene3D G3DSA:1.20.1530.20 3 319 5.6E-34 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily RY45_01335 2a0859375bfa97d55278fdba00604e04 323 PIRSF PIRSF026166 1 323 2.7E-129 T 14-10-2018 IPR016833 Putative sodium bile acid cotransporter RY45_06770 1546c4d0952e844391f5dcd69c192e06 308 SUPERFAMILY SSF56801 106 273 1.83E-8 T 14-10-2018 RY45_06770 1546c4d0952e844391f5dcd69c192e06 308 Gene3D G3DSA:3.40.50.12780 2 308 4.0E-39 T 14-10-2018 RY45_06410 2d403988ee6d0a7f980a2e99a2c1995d 431 TIGRFAM TIGR00814 stp: serine transporter 22 420 9.2E-181 T 14-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 RY45_06410 2d403988ee6d0a7f980a2e99a2c1995d 431 Pfam PF03222 Tryptophan/tyrosine permease family 33 393 2.3E-14 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 RY45_21025 856f587b999a3ed5993286bed55bb517 130 Pfam PF02635 DsrE/DsrF-like family 5 130 9.3E-28 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein RY45_21025 856f587b999a3ed5993286bed55bb517 130 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 4 130 9.8E-50 T 14-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 RY45_21025 856f587b999a3ed5993286bed55bb517 130 SUPERFAMILY SSF75169 1 130 1.16E-35 T 14-10-2018 IPR027396 DsrEFH-like RY45_21025 856f587b999a3ed5993286bed55bb517 130 Gene3D G3DSA:3.40.1260.10 1 130 1.8E-49 T 14-10-2018 IPR027396 DsrEFH-like RY45_03230 17c0e66dcc73fdd0b7c950cadf387fbc 206 Pfam PF01810 LysE type translocator 14 200 1.1E-42 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_03230 17c0e66dcc73fdd0b7c950cadf387fbc 206 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 1.6E-76 T 14-10-2018 IPR004777 L-lysine exporter/arginine exporter GO:0016021 RY45_05585 7ed678d66fa6cf9bcd0f354fc0ac6540 240 SUPERFAMILY SSF49354 18 159 6.54E-8 T 14-10-2018 IPR008962 PapD-like superfamily RY45_05585 7ed678d66fa6cf9bcd0f354fc0ac6540 240 Gene3D G3DSA:2.60.40.10 26 156 8.2E-14 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_02115 df65b0184302d1514c2713d4c58efdb9 372 PIRSF PIRSF000345 6 320 2.8E-101 T 14-10-2018 IPR009160 Acyl-CoA desaturase, haem/steroid binding domain-containing GO:0004768|GO:0006636|GO:0016021 MetaCyc: PWY-5987|MetaCyc: PWY-5996 RY45_02115 df65b0184302d1514c2713d4c58efdb9 372 Pfam PF00487 Fatty acid desaturase 39 260 2.6E-22 T 14-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RY45_02115 df65b0184302d1514c2713d4c58efdb9 372 PRINTS PR00075 Fatty acid desaturase family 1 signature 229 243 5.8E-30 T 14-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RY45_02115 df65b0184302d1514c2713d4c58efdb9 372 PRINTS PR00075 Fatty acid desaturase family 1 signature 186 207 5.8E-30 T 14-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RY45_02115 df65b0184302d1514c2713d4c58efdb9 372 PRINTS PR00075 Fatty acid desaturase family 1 signature 96 125 5.8E-30 T 14-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RY45_02115 df65b0184302d1514c2713d4c58efdb9 372 PRINTS PR00075 Fatty acid desaturase family 1 signature 35 57 5.8E-30 T 14-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RY45_02115 df65b0184302d1514c2713d4c58efdb9 372 PRINTS PR00075 Fatty acid desaturase family 1 signature 58 78 5.8E-30 T 14-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RY45_21725 00fc5b0c88f506c193d76ffdc2d1c190 134 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 100 1.0E-12 T 14-10-2018 RY45_21725 00fc5b0c88f506c193d76ffdc2d1c190 134 SUPERFAMILY SSF54593 1 131 2.11E-19 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_21725 00fc5b0c88f506c193d76ffdc2d1c190 134 Gene3D G3DSA:3.10.180.10 1 130 1.6E-24 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_18395 03fb2ba3de359d0fb99d9e05cd76d52c 200 Pfam PF02525 Flavodoxin-like fold 4 171 3.0E-33 T 14-10-2018 IPR003680 Flavodoxin-like fold RY45_18395 03fb2ba3de359d0fb99d9e05cd76d52c 200 Gene3D G3DSA:3.40.50.360 3 195 9.9E-42 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_18395 03fb2ba3de359d0fb99d9e05cd76d52c 200 SUPERFAMILY SSF52218 1 193 3.64E-48 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_06815 0d57c792daa3240292e8010429e513e9 232 SUPERFAMILY SSF55681 6 229 4.97E-44 T 14-10-2018 RY45_06815 0d57c792daa3240292e8010429e513e9 232 Gene3D G3DSA:3.30.930.10 6 232 1.2E-50 T 14-10-2018 RY45_10815 3b0de7e9f15193c38396bf67cd32d135 143 Pfam PF00293 NUDIX domain 26 135 8.4E-11 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RY45_10815 3b0de7e9f15193c38396bf67cd32d135 143 SUPERFAMILY SSF55811 19 137 9.48E-19 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RY45_10815 3b0de7e9f15193c38396bf67cd32d135 143 Gene3D G3DSA:3.90.79.10 13 140 3.2E-18 T 14-10-2018 RY45_06230 1301c9304a46f6876f6a4e5e61ba20ea 78 Gene3D G3DSA:1.10.10.1130 1 78 8.4E-29 T 14-10-2018 RY45_06230 1301c9304a46f6876f6a4e5e61ba20ea 78 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 3.0E-28 T 14-10-2018 IPR021250 Protein of unknown function DUF2789 RY45_15355 0e0485fca3b461ad9cf456679ab0a803 61 Pfam PF11127 Protein of unknown function (DUF2892) 2 56 3.5E-14 T 14-10-2018 IPR021309 Protein of unknown function DUF2892 RY45_11145 d6f8d406d4c1a5cd210ce77d65ed4573 335 SMART SM00354 3 73 1.1E-24 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_11145 d6f8d406d4c1a5cd210ce77d65ed4573 335 SUPERFAMILY SSF53822 64 334 1.78E-72 T 14-10-2018 IPR028082 Periplasmic binding protein-like I RY45_11145 d6f8d406d4c1a5cd210ce77d65ed4573 335 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 321 3.0E-40 T 14-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain RY45_11145 d6f8d406d4c1a5cd210ce77d65ed4573 335 Gene3D G3DSA:3.40.50.2300 163 329 6.1E-78 T 14-10-2018 RY45_11145 d6f8d406d4c1a5cd210ce77d65ed4573 335 Gene3D G3DSA:1.10.260.40 1 61 2.4E-22 T 14-10-2018 RY45_11145 d6f8d406d4c1a5cd210ce77d65ed4573 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 3.5E-15 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RY45_11145 d6f8d406d4c1a5cd210ce77d65ed4573 335 SUPERFAMILY SSF47413 2 61 1.75E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_11145 d6f8d406d4c1a5cd210ce77d65ed4573 335 Gene3D G3DSA:3.40.50.2300 64 324 6.1E-78 T 14-10-2018 RY45_09185 e1ec2774d67719bf51222f5d1bed194e 131 Pfam PF09842 Predicted membrane protein (DUF2069) 9 111 4.1E-35 T 14-10-2018 IPR018643 Protein of unknown function DUF2069, membrane RY45_03165 fa5af644479b889b9062992d2e34758d 172 SUPERFAMILY SSF50182 93 159 4.9E-12 T 14-10-2018 IPR010920 LSM domain superfamily RY45_03165 fa5af644479b889b9062992d2e34758d 172 Pfam PF00924 Mechanosensitive ion channel 48 159 8.4E-14 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RY45_21600 768a07eaf73e013922e59848e723370b 159 Pfam PF05981 CreA protein 31 158 1.3E-54 T 14-10-2018 IPR010292 Uncharacterised protein family CreA RY45_21600 768a07eaf73e013922e59848e723370b 159 PIRSF PIRSF003174 4 159 9.8E-63 T 14-10-2018 IPR010292 Uncharacterised protein family CreA RY45_03075 ed8cc677741e2449f057e8557e2afd67 468 Pfam PF00501 AMP-binding enzyme 17 374 2.0E-46 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RY45_03075 ed8cc677741e2449f057e8557e2afd67 468 SUPERFAMILY SSF56801 16 450 1.57E-92 T 14-10-2018 RY45_03075 ed8cc677741e2449f057e8557e2afd67 468 Gene3D G3DSA:3.30.300.30 371 447 3.6E-18 T 14-10-2018 RY45_03075 ed8cc677741e2449f057e8557e2afd67 468 Pfam PF13193 AMP-binding enzyme C-terminal domain 384 447 1.4E-11 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RY45_03075 ed8cc677741e2449f057e8557e2afd67 468 Gene3D G3DSA:3.40.50.12780 11 370 1.2E-67 T 14-10-2018 RY45_03075 ed8cc677741e2449f057e8557e2afd67 468 ProSitePatterns PS00455 Putative AMP-binding domain signature. 149 160 - T 14-10-2018 IPR020845 AMP-binding, conserved site RY45_09460 3bc2a769000b1460b47b075ca36a6b41 148 Gene3D G3DSA:3.10.580.10 1 146 2.0E-44 T 14-10-2018 RY45_09460 3bc2a769000b1460b47b075ca36a6b41 148 SUPERFAMILY SSF54631 1 135 2.97E-31 T 14-10-2018 RY45_09460 3bc2a769000b1460b47b075ca36a6b41 148 SMART SM00116 11 59 3.4E-8 T 14-10-2018 IPR000644 CBS domain RY45_09460 3bc2a769000b1460b47b075ca36a6b41 148 SMART SM00116 86 133 1.7E-7 T 14-10-2018 IPR000644 CBS domain RY45_09460 3bc2a769000b1460b47b075ca36a6b41 148 Pfam PF00571 CBS domain 81 130 7.1E-11 T 14-10-2018 IPR000644 CBS domain RY45_09460 3bc2a769000b1460b47b075ca36a6b41 148 Pfam PF00571 CBS domain 5 56 6.4E-14 T 14-10-2018 IPR000644 CBS domain RY45_12525 5e2b4742ce1896367e746555db14e2ce 198 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 7 16 - T 14-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 RY45_12525 5e2b4742ce1896367e746555db14e2ce 198 Pfam PF01184 GPR1/FUN34/yaaH family 2 175 1.3E-38 T 14-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 RY45_06140 b311f87aed7434c9b9b62c9085b717dd 74 Pfam PF04400 (Na+)-NQR maturation NqrM 22 63 3.1E-23 T 14-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM RY45_04195 86876231c789fd2d90d507ac6abeab64 119 Pfam PF16068 Domain of unknown function (DUF4810) 26 110 3.6E-32 T 14-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats RY45_04195 86876231c789fd2d90d507ac6abeab64 119 PIRSF PIRSF020555 1 119 3.7E-45 T 14-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats RY45_12000 b51910117f939dec85071de61e9bf822 278 TIGRFAM TIGR03172 TIGR03172: putative selenium-dependent hydroxylase accessory protein YqeC 31 261 3.6E-85 T 14-10-2018 IPR017587 Putative selenium-dependent hydroxylase accessory protein YqeC RY45_06530 0a378311cfbbd1eb9f36f74c27f165d0 256 SUPERFAMILY SSF53850 27 253 2.17E-38 T 14-10-2018 RY45_06530 0a378311cfbbd1eb9f36f74c27f165d0 256 Gene3D G3DSA:3.40.190.10 32 252 3.6E-28 T 14-10-2018 RY45_06530 0a378311cfbbd1eb9f36f74c27f165d0 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 252 3.3E-26 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_06530 0a378311cfbbd1eb9f36f74c27f165d0 256 SMART SM00062 26 256 8.8E-4 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_06530 0a378311cfbbd1eb9f36f74c27f165d0 256 Gene3D G3DSA:3.40.190.10 114 212 3.6E-28 T 14-10-2018 RY45_19460 d639923dd06acbd8375cc98a091a7490 195 Gene3D G3DSA:3.40.50.1820 4 195 3.3E-52 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_19460 d639923dd06acbd8375cc98a091a7490 195 SUPERFAMILY SSF53474 3 193 3.13E-19 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_19460 d639923dd06acbd8375cc98a091a7490 195 Pfam PF05728 Uncharacterised protein family (UPF0227) 5 193 4.1E-57 T 14-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 Gene3D G3DSA:3.40.190.10 132 360 5.5E-139 T 14-10-2018 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 Gene3D G3DSA:3.40.190.10 29 331 5.5E-139 T 14-10-2018 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 90 103 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 177 196 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 264 283 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 74 88 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 309 335 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 154 168 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 214 233 3.5E-67 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 SUPERFAMILY SSF53850 25 364 7.65E-105 T 14-10-2018 RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 Pfam PF13416 Bacterial extracellular solute-binding protein 42 329 3.5E-33 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein RY45_21570 3f6bb397900329e3edd345ee078e4c81 365 PIRSF PIRSF019574 1 365 1.5E-138 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RY45_15650 56dee1b01a0c5d513577e3cf4559116a 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 83 212 3.9E-11 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RY45_15650 56dee1b01a0c5d513577e3cf4559116a 326 SUPERFAMILY SSF51735 1 302 2.49E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_15650 56dee1b01a0c5d513577e3cf4559116a 326 Gene3D G3DSA:3.40.50.720 2 258 6.2E-33 T 14-10-2018 RY45_10225 540d8d57febc7a2467b95ab68ac5a78f 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 63 320 2.9E-42 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RY45_14370 b1ed0a3947713b2a46f13d3dc21831f0 354 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 348 3.3E-162 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RY45_14370 b1ed0a3947713b2a46f13d3dc21831f0 354 PIRSF PIRSF001361 1 352 2.5E-156 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RY45_14370 b1ed0a3947713b2a46f13d3dc21831f0 354 Gene3D G3DSA:3.20.20.70 1 349 7.4E-153 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_14370 b1ed0a3947713b2a46f13d3dc21831f0 354 Pfam PF00793 DAHP synthetase I family 44 338 2.9E-101 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RY45_14370 b1ed0a3947713b2a46f13d3dc21831f0 354 SUPERFAMILY SSF51569 8 348 3.56E-133 T 14-10-2018 RY45_05215 ea6fe7ad78f96d86f7191d4895021e29 331 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 327 37.351 T 14-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 RY45_05215 ea6fe7ad78f96d86f7191d4895021e29 331 Gene3D G3DSA:3.40.718.10 2 329 3.6E-130 T 14-10-2018 RY45_05215 ea6fe7ad78f96d86f7191d4895021e29 331 SUPERFAMILY SSF53659 4 326 2.19E-116 T 14-10-2018 RY45_05215 ea6fe7ad78f96d86f7191d4895021e29 331 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 324 5.5E-132 T 14-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 RY45_05215 ea6fe7ad78f96d86f7191d4895021e29 331 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 32 320 1.3E-109 T 14-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 RY45_02210 6fa93fe96f63ba41d9c78547ad02222f 287 Gene3D G3DSA:3.30.420.40 163 265 8.9E-6 T 14-10-2018 RY45_02210 6fa93fe96f63ba41d9c78547ad02222f 287 SUPERFAMILY SSF53067 39 143 4.79E-8 T 14-10-2018 RY45_02210 6fa93fe96f63ba41d9c78547ad02222f 287 Gene3D G3DSA:3.30.1490.300 73 129 8.9E-6 T 14-10-2018 RY45_02210 6fa93fe96f63ba41d9c78547ad02222f 287 Gene3D G3DSA:3.30.420.40 31 162 8.9E-6 T 14-10-2018 RY45_13555 bac022b64fd074ab5a669d545e0c38ff 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 3.4E-37 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_13555 bac022b64fd074ab5a669d545e0c38ff 306 Gene3D G3DSA:1.10.3720.10 85 300 1.1E-17 T 14-10-2018 IPR035906 MetI-like superfamily RY45_13555 bac022b64fd074ab5a669d545e0c38ff 306 SUPERFAMILY SSF161098 88 290 1.2E-17 T 14-10-2018 IPR035906 MetI-like superfamily RY45_19350 b654294ad28c408b1f68620426ee9bd6 68 Pfam PF04024 PspC domain 7 59 5.0E-11 T 14-10-2018 IPR007168 Phage shock protein, PspC, N-terminal RY45_09735 be007e64894a3f484fe4c9980f546947 201 SUPERFAMILY SSF140478 36 187 1.57E-53 T 14-10-2018 IPR023353 LemA-like domain superfamily RY45_09735 be007e64894a3f484fe4c9980f546947 201 Gene3D G3DSA:1.20.1440.20 29 200 1.6E-64 T 14-10-2018 IPR023353 LemA-like domain superfamily RY45_09735 be007e64894a3f484fe4c9980f546947 201 Pfam PF04011 LemA family 19 200 6.5E-66 T 14-10-2018 IPR007156 LemA RY45_05355 31c0be26992d44eb4a716f3da92b9628 183 Pfam PF00857 Isochorismatase family 3 139 1.0E-34 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 RY45_05355 31c0be26992d44eb4a716f3da92b9628 183 SUPERFAMILY SSF52499 3 158 1.57E-43 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_05355 31c0be26992d44eb4a716f3da92b9628 183 Gene3D G3DSA:3.40.50.850 2 158 1.2E-44 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RY45_13960 d1b74394f7ec2d23e0cc6e0edc232601 146 TIGRFAM TIGR02572 LcrR: type III secretion system regulator LcrR 3 142 7.9E-57 T 14-10-2018 IPR013405 Type III secretion system regulator, LcrR RY45_13960 d1b74394f7ec2d23e0cc6e0edc232601 146 Pfam PF09621 Type III secretion system regulator (LcrR) 3 142 1.1E-55 T 14-10-2018 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 RY45_08875 eb26b971fad03ee52a56f00e981e4853 431 Pfam PF03222 Tryptophan/tyrosine permease family 30 330 1.7E-4 T 14-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 RY45_03695 801aff89ad08174ab789bac472d8138f 336 SUPERFAMILY SSF53850 24 331 6.92E-77 T 14-10-2018 RY45_03695 801aff89ad08174ab789bac472d8138f 336 Gene3D G3DSA:3.40.190.10 25 296 6.4E-127 T 14-10-2018 RY45_03695 801aff89ad08174ab789bac472d8138f 336 Pfam PF13343 Bacterial extracellular solute-binding protein 72 299 8.6E-22 T 14-10-2018 RY45_03695 801aff89ad08174ab789bac472d8138f 336 Gene3D G3DSA:3.40.190.10 120 326 6.4E-127 T 14-10-2018 RY45_03695 801aff89ad08174ab789bac472d8138f 336 PIRSF PIRSF002825 1 336 7.9E-97 T 14-10-2018 IPR026045 Ferric binding protein RY45_14055 54513e3c95368e6452a023caa721c0a2 114 Gene3D G3DSA:3.30.1420.10 4 42 1.1E-12 T 14-10-2018 RY45_14055 54513e3c95368e6452a023caa721c0a2 114 PIRSF PIRSF006223 7 114 8.2E-44 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE RY45_14055 54513e3c95368e6452a023caa721c0a2 114 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 7 114 7.5E-48 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE RY45_14055 54513e3c95368e6452a023caa721c0a2 114 Gene3D G3DSA:1.10.10.370 44 114 7.2E-30 T 14-10-2018 RY45_14055 54513e3c95368e6452a023caa721c0a2 114 Pfam PF04358 DsrC like protein 8 114 1.2E-43 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE RY45_14055 54513e3c95368e6452a023caa721c0a2 114 SUPERFAMILY SSF69721 4 114 8.11E-41 T 14-10-2018 IPR025526 DsrC-like domain superfamily RY45_04005 88539a06e97c500768aa0cecd1acc299 282 SUPERFAMILY SSF55186 117 265 8.2E-10 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RY45_04005 88539a06e97c500768aa0cecd1acc299 282 Gene3D G3DSA:3.30.980.10 117 274 7.2E-7 T 14-10-2018 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 Pfam PF02119 Flagellar P-ring protein 27 366 5.2E-133 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 Hamap MF_00416 Flagellar P-ring protein [flgI]. 5 367 35.907 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 25 40 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 254 266 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 85 104 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 107 124 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 165 183 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 191 209 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 59 74 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 124 142 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_20245 9123f66194eb9b2eb85fa0c61df0f7df 367 PRINTS PR01010 Flagellar P-ring protein signature 40 55 9.9E-76 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RY45_06575 6dffa6e1a7d7e1ecf997f60b9c296dd6 337 Gene3D G3DSA:3.40.50.2300 77 308 2.0E-16 T 14-10-2018 RY45_06575 6dffa6e1a7d7e1ecf997f60b9c296dd6 337 Pfam PF04392 ABC transporter substrate binding protein 81 328 8.8E-8 T 14-10-2018 IPR007487 ABC transporter, substrate-binding protein RY45_06575 6dffa6e1a7d7e1ecf997f60b9c296dd6 337 Gene3D G3DSA:3.40.50.2300 148 328 2.0E-16 T 14-10-2018 RY45_13305 9d91a561d5e88312504674dbbbfe8da2 131 SUPERFAMILY SSF54593 2 128 4.56E-30 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_13305 9d91a561d5e88312504674dbbbfe8da2 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 1.3E-14 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RY45_13305 9d91a561d5e88312504674dbbbfe8da2 131 Gene3D G3DSA:3.10.180.10 1 128 3.2E-35 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_21165 c0c404320e9bb1d4b42573b6b6b7d1d4 210 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 5 204 19.956 T 14-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 RY45_21165 c0c404320e9bb1d4b42573b6b6b7d1d4 210 Pfam PF01794 Ferric reductase like transmembrane component 53 161 4.0E-15 T 14-10-2018 IPR013130 Ferric reductase transmembrane component-like domain RY45_19435 bc9a941a6cc2d3a29635fcc0217ac574 669 Pfam PF04632 Fusaric acid resistance protein family 18 661 4.1E-188 T 14-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 RY45_19040 b1604e24e1c71b29c3d7748ff95fd96f 378 Pfam PF10758 Protein of unknown function (DUF2586) 2 370 3.4E-160 T 14-10-2018 IPR019694 Bacteriophage HP1, Orf23 RY45_17690 b47d39c2f6996913aae1c6c03ef2066f 135 Gene3D G3DSA:3.30.420.270 61 129 4.0E-10 T 14-10-2018 RY45_17690 b47d39c2f6996913aae1c6c03ef2066f 135 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 132 1.2E-30 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RY45_18100 a8da20ee3fa79ab1c8a761a2b5d64000 300 Pfam PF01925 Sulfite exporter TauE/SafE 5 146 2.2E-10 T 14-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RY45_13480 4c70cb2422daa5d39dc8695760558613 132 Gene3D G3DSA:2.60.40.3230 18 130 5.7E-26 T 14-10-2018 IPR038483 YcfL-like superfamily RY45_13480 4c70cb2422daa5d39dc8695760558613 132 Pfam PF07233 Protein of unknown function (DUF1425) 37 125 4.8E-25 T 14-10-2018 IPR010824 Protein of unknown function DUF1425 RY45_02530 5314317654a7786ac6b67aa87adba755 255 SUPERFAMILY SSF110399 1 235 3.92E-85 T 14-10-2018 RY45_02530 5314317654a7786ac6b67aa87adba755 255 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 42.55 T 14-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 RY45_02530 5314317654a7786ac6b67aa87adba755 255 Gene3D G3DSA:3.20.20.70 1 253 8.9E-110 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_02530 5314317654a7786ac6b67aa87adba755 255 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 247 7.7E-107 T 14-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 RY45_08335 4a51e0fdef265decb49155fd56d922a0 98 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 88 2.5E-5 T 14-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 RY45_06535 d434416c6b81f68a2bfbd496e17e8c5a 494 SUPERFAMILY SSF47090 168 241 2.12E-15 T 14-10-2018 IPR036365 PGBD-like superfamily RY45_06535 d434416c6b81f68a2bfbd496e17e8c5a 494 Pfam PF01471 Putative peptidoglycan binding domain 183 237 5.1E-11 T 14-10-2018 IPR002477 Peptidoglycan binding-like RY45_06535 d434416c6b81f68a2bfbd496e17e8c5a 494 SUPERFAMILY SSF141523 263 423 1.44E-20 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RY45_06535 d434416c6b81f68a2bfbd496e17e8c5a 494 Pfam PF03734 L,D-transpeptidase catalytic domain 265 432 1.1E-30 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RY45_14735 abda56d1fc4012d0582b8910df8d67fe 394 Pfam PF08495 FIST N domain 36 226 4.2E-31 T 14-10-2018 IPR013702 FIST domain, N-terminal RY45_14735 abda56d1fc4012d0582b8910df8d67fe 394 SMART SM01204 228 374 9.7E-22 T 14-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 RY45_14735 abda56d1fc4012d0582b8910df8d67fe 394 SMART SM00897 33 227 2.7E-39 T 14-10-2018 IPR013702 FIST domain, N-terminal RY45_14735 abda56d1fc4012d0582b8910df8d67fe 394 Pfam PF10442 FIST C domain 228 373 3.0E-14 T 14-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 RY45_15785 95948d6cac46755221a65860aa8a801d 435 Gene3D G3DSA:2.170.16.10 47 203 4.8E-10 T 14-10-2018 RY45_15785 95948d6cac46755221a65860aa8a801d 435 SUPERFAMILY SSF51294 46 145 1.88E-16 T 14-10-2018 IPR036844 Hint domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RY45_15785 95948d6cac46755221a65860aa8a801d 435 TIGRFAM TIGR01443 intein_Cterm: intein C-terminal splicing region 186 201 0.0028 T 14-10-2018 IPR030934 Intein C-terminal splicing region RY45_00480 7730cdb89c16b6f1df2081ade2a63cce 276 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 6 276 5.9E-99 T 14-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 RY45_03535 10b8de8b251be5a4cf7955a58e11af42 239 Pfam PF03591 AzlC protein 28 168 8.0E-35 T 14-10-2018 IPR011606 Branched-chain amino acid transport, permease RY45_18280 bfe3421287ff61d0604b6d1f477dae3c 198 Pfam PF10986 Protein of unknown function (DUF2796) 28 194 2.1E-56 T 14-10-2018 IPR021253 Protein of unknown function DUF2796 RY45_17450 1659a45b13d7928da7a87498fb1aa143 185 Pfam PF11659 Protein of unknown function (DUF3261) 44 184 7.0E-37 T 14-10-2018 IPR021675 Protein of unknown function DUF3261 RY45_13565 7a90583a629061a5c9f48d466ae1a8c4 211 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 6 203 9.1E-64 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RY45_13565 7a90583a629061a5c9f48d466ae1a8c4 211 Pfam PF01914 MarC family integral membrane protein 7 207 2.1E-61 T 14-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RY45_04900 2b44df516733543d9da169f51f556fbd 199 Pfam PF00694 Aconitase C-terminal domain 1 125 3.9E-39 T 14-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 RY45_04900 2b44df516733543d9da169f51f556fbd 199 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 1.5E-93 T 14-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 RY45_04900 2b44df516733543d9da169f51f556fbd 199 Gene3D G3DSA:3.20.19.10 1 180 4.0E-76 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RY45_04900 2b44df516733543d9da169f51f556fbd 199 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 44.643 T 14-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 RY45_04900 2b44df516733543d9da169f51f556fbd 199 SUPERFAMILY SSF52016 1 195 3.34E-61 T 14-10-2018 RY45_13465 16a38d5094bbc06f0b0c40e3a405701b 285 PIRSF PIRSF028200 11 285 4.4E-60 T 14-10-2018 IPR016875 Uncharacterised conserved protein UCP028200 RY45_09790 7c02b796bfae6ee34641f8cb5e55e20d 233 Pfam PF11201 Protein of unknown function (DUF2982) 68 225 3.8E-61 T 14-10-2018 IPR021367 Protein of unknown function DUF2982 RY45_16525 421c66e963bcfd92497e72b3e6868635 444 PIRSF PIRSF006603 1 443 1.1E-53 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_16525 421c66e963bcfd92497e72b3e6868635 444 Pfam PF01554 MatE 265 393 7.3E-9 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_16525 421c66e963bcfd92497e72b3e6868635 444 Pfam PF01554 MatE 21 182 9.1E-20 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RY45_18020 d29c9b63d70e864bca61419123662a3c 398 Pfam PF12698 ABC-2 family transporter protein 23 373 5.5E-38 T 14-10-2018 RY45_00490 86908dad5363380b1950d8e922dc2ff4 342 PIRSF PIRSF018494 1 336 3.2E-143 T 14-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria RY45_00490 86908dad5363380b1950d8e922dc2ff4 342 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 41 316 7.6E-69 T 14-10-2018 IPR006430 Phage portal protein PBSX family RY45_22110 113c38e49c5fd6ec6ff90d8f4bd3d48d 453 PIRSF PIRSF004548 1 449 1.1E-173 T 14-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD RY45_22110 113c38e49c5fd6ec6ff90d8f4bd3d48d 453 Pfam PF06123 Inner membrane protein CreD 7 437 3.0E-146 T 14-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD RY45_06590 0adb82152d35bdf806383b7b68bbe2c9 56 Pfam PF01679 Proteolipid membrane potential modulator 4 51 1.6E-18 T 14-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 RY45_09640 d66e589504a71479c26dc4cbc706661b 376 SMART SM00897 23 216 5.1E-5 T 14-10-2018 IPR013702 FIST domain, N-terminal RY45_09640 d66e589504a71479c26dc4cbc706661b 376 Pfam PF10442 FIST C domain 217 353 2.7E-13 T 14-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 RY45_09640 d66e589504a71479c26dc4cbc706661b 376 SMART SM01204 217 355 1.9E-17 T 14-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 RY45_09640 d66e589504a71479c26dc4cbc706661b 376 Pfam PF08495 FIST N domain 33 215 2.1E-19 T 14-10-2018 IPR013702 FIST domain, N-terminal RY45_12115 07e62cd8b21374121209a4ca5542250b 418 Gene3D G3DSA:2.40.160.60 22 418 1.4E-127 T 14-10-2018 RY45_12115 07e62cd8b21374121209a4ca5542250b 418 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 13 418 1.6E-114 T 14-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) RY45_12115 07e62cd8b21374121209a4ca5542250b 418 SUPERFAMILY SSF56935 22 418 5.04E-96 T 14-10-2018 RY45_20865 f8ee19386c2be041514fc84c452e13f2 161 Gene3D G3DSA:3.40.630.30 1 160 9.1E-44 T 14-10-2018 RY45_20865 f8ee19386c2be041514fc84c452e13f2 161 Pfam PF00583 Acetyltransferase (GNAT) family 34 134 2.9E-16 T 14-10-2018 IPR000182 GNAT domain RY45_20865 f8ee19386c2be041514fc84c452e13f2 161 SUPERFAMILY SSF55729 1 160 2.06E-37 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_20190 4198dfaa6d1a97db282b3d8841b9084d 362 Gene3D G3DSA:3.30.750.140 224 337 1.8E-21 T 14-10-2018 IPR038610 FliK-like, C-terminal domain superfamily RY45_20190 4198dfaa6d1a97db282b3d8841b9084d 362 Pfam PF02120 Flagellar hook-length control protein FliK 245 326 1.6E-18 T 14-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal RY45_10185 1e5e5686102da4f0d41aacf81689fd39 569 Gene3D G3DSA:3.20.20.70 191 498 1.8E-96 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_10185 1e5e5686102da4f0d41aacf81689fd39 569 SUPERFAMILY SSF51445 194 510 3.87E-75 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_10185 1e5e5686102da4f0d41aacf81689fd39 569 Pfam PF02065 Melibiase 201 351 1.4E-12 T 14-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RY45_02645 2a5bcd9cc700fea01936b30ed7d09350 83 Pfam PF03692 Putative zinc- or iron-chelating domain 2 60 3.8E-6 T 14-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein RY45_17150 cac05091110eaa5754de05854ceaf632 164 Pfam PF04608 Phosphatidylglycerophosphatase A 20 157 3.4E-51 T 14-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RY45_17150 cac05091110eaa5754de05854ceaf632 164 SUPERFAMILY SSF101307 13 159 4.32E-44 T 14-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 RY45_17150 cac05091110eaa5754de05854ceaf632 164 PIRSF PIRSF006162 10 164 3.8E-46 T 14-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RY45_16905 ddc0ba413ff16e08c368ee76f4b3ae96 446 Pfam PF01523 Putative modulator of DNA gyrase 23 311 8.1E-42 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 RY45_16905 ddc0ba413ff16e08c368ee76f4b3ae96 446 SUPERFAMILY SSF111283 3 446 2.35E-87 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 RY45_16905 ddc0ba413ff16e08c368ee76f4b3ae96 446 Gene3D G3DSA:3.30.2290.10 3 210 6.3E-33 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal RY45_13275 257dfefeec788077bd424c3ac2482541 214 Gene3D G3DSA:3.40.50.10420 32 211 9.8E-39 T 14-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RY45_13275 257dfefeec788077bd424c3ac2482541 214 Pfam PF02589 LUD domain 107 211 3.7E-26 T 14-10-2018 IPR003741 LUD domain RY45_13275 257dfefeec788077bd424c3ac2482541 214 SUPERFAMILY SSF100950 35 212 1.55E-39 T 14-10-2018 IPR037171 NagB/RpiA transferase-like RY45_07830 7735b521eba07e98767440026618a910 73 SUPERFAMILY SSF48371 4 67 8.9E-5 T 14-10-2018 IPR016024 Armadillo-type fold RY45_16470 5b64a0273a00ecdce3114429fa38e961 192 Pfam PF05137 Fimbrial assembly protein (PilN) 100 176 9.9E-16 T 14-10-2018 IPR007813 Fimbrial assembly PilN RY45_09665 4f93fdcba6bfe987188ee59f7f77c759 182 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 157 2.5E-31 T 14-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09665 4f93fdcba6bfe987188ee59f7f77c759 182 Gene3D G3DSA:1.20.120.1200 1 159 2.0E-45 T 14-10-2018 RY45_00500 71981b6fb93a4cb5f1de0179ab166182 97 SUPERFAMILY SSF47413 2 72 1.13E-7 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_00500 71981b6fb93a4cb5f1de0179ab166182 97 Pfam PF13518 Helix-turn-helix domain 3 39 9.1E-6 T 14-10-2018 RY45_22295 87597967606d35c64b11bf17a2e250ea 94 Gene3D G3DSA:3.30.2310.20 1 91 1.8E-24 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily RY45_22295 87597967606d35c64b11bf17a2e250ea 94 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 89 8.9E-15 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RY45_07700 19b5d051d6c88bfa0ab7f7129df08c1c 405 SUPERFAMILY SSF47789 328 379 1.7E-6 T 14-10-2018 RY45_07700 19b5d051d6c88bfa0ab7f7129df08c1c 405 Gene3D G3DSA:1.10.150.20 328 397 2.3E-7 T 14-10-2018 RY45_15485 fbfc5d5a1bc0c02d16d2a56d37107a1b 447 Gene3D G3DSA:1.20.1740.10 8 441 5.4E-69 T 14-10-2018 RY45_15485 fbfc5d5a1bc0c02d16d2a56d37107a1b 447 PIRSF PIRSF006060 2 443 1.8E-69 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_15485 fbfc5d5a1bc0c02d16d2a56d37107a1b 447 Pfam PF13520 Amino acid permease 31 391 9.4E-36 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RY45_09810 8560ce2cc042031b885c9ffaf3013d7b 184 Pfam PF06185 YecM protein 15 166 3.5E-25 T 14-10-2018 IPR010393 Protein of unknown function DUF991 RY45_09810 8560ce2cc042031b885c9ffaf3013d7b 184 Gene3D G3DSA:3.10.180.10 3 169 2.3E-38 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_09810 8560ce2cc042031b885c9ffaf3013d7b 184 SUPERFAMILY SSF54593 8 167 1.57E-28 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RY45_14450 24ba17ea7d218df3d24f262f83aa062d 165 Pfam PF14345 GDYXXLXY protein 14 150 7.0E-33 T 14-10-2018 IPR025833 GDYXXLXY protein RY45_11370 eb12faeb3deb5891a9bd51ac7be291ac 162 Pfam PF05751 FixH 7 147 1.9E-40 T 14-10-2018 IPR008620 Nitrogen fixation protein FixH RY45_12890 6f22e206bb1a5e53adc1dbe73ba4f04b 666 SUPERFAMILY SSF48208 472 578 1.51E-6 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RY45_19825 cd18e520791907e2a5fa910151176acf 103 Pfam PF10115 Transcriptional activator HlyU 4 92 4.1E-35 T 14-10-2018 IPR018772 Transcription activator HlyU RY45_10180 7a66980cf6cbeb07aa3fd3c3ca878b3e 118 Pfam PF03788 LrgA family 21 111 2.2E-23 T 14-10-2018 IPR005538 LrgA/CidA family GO:0016021 RY45_14080 17f82a017f4aa7566ca5ce924e5cee8e 732 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 688 731 1.1E-17 T 14-10-2018 IPR020011 Motility protein FimV, C-terminal RY45_14080 17f82a017f4aa7566ca5ce924e5cee8e 732 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 89 162 3.1E-25 T 14-10-2018 IPR020012 Motility protein FimV, N-terminal RY45_14080 17f82a017f4aa7566ca5ce924e5cee8e 732 Gene3D G3DSA:1.20.58.2200 670 731 3.3E-18 T 14-10-2018 IPR038440 FimV, C-terminal domain superfamily RY45_13285 c22b6277fbeaef921e37a8500f36f035 260 Pfam PF02754 Cysteine-rich domain 13 91 9.3E-11 T 14-10-2018 IPR004017 Cysteine-rich domain RY45_13285 c22b6277fbeaef921e37a8500f36f035 260 Pfam PF02754 Cysteine-rich domain 136 220 1.1E-11 T 14-10-2018 IPR004017 Cysteine-rich domain RY45_21115 528edaaee844f73f1a3ffe425da20ffc 217 Pfam PF02254 TrkA-N domain 5 120 7.9E-28 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RY45_21115 528edaaee844f73f1a3ffe425da20ffc 217 Gene3D G3DSA:3.30.70.1450 138 213 3.3E-11 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_21115 528edaaee844f73f1a3ffe425da20ffc 217 SUPERFAMILY SSF116726 136 216 2.62E-14 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RY45_21115 528edaaee844f73f1a3ffe425da20ffc 217 SUPERFAMILY SSF51735 3 134 8.14E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_21115 528edaaee844f73f1a3ffe425da20ffc 217 Gene3D G3DSA:3.40.50.720 1 137 2.3E-36 T 14-10-2018 RY45_14410 e7f9e7c33fef7bb68f3b2e00ccbfd484 159 SUPERFAMILY SSF51182 24 121 2.61E-15 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily RY45_14410 e7f9e7c33fef7bb68f3b2e00ccbfd484 159 Gene3D G3DSA:2.60.120.10 22 128 3.1E-7 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_14410 e7f9e7c33fef7bb68f3b2e00ccbfd484 159 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 5 132 8.0E-46 T 14-10-2018 IPR027565 Cupin fold metalloprotein, WbuC family RY45_19035 383727a4260e142dd75de5397b1dae24 171 Pfam PF06891 P2 phage tail completion protein R (GpR) 17 143 6.3E-18 T 14-10-2018 IPR009678 Bacteriophage tail completion protein R RY45_06365 29cda1cd3c89f237630455fca4fe0e2c 196 Gene3D G3DSA:3.30.420.10 4 195 4.6E-74 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RY45_06365 29cda1cd3c89f237630455fca4fe0e2c 196 Hamap MF_00052_B Ribonuclease HII [rnhB]. 10 189 37.786 T 14-10-2018 IPR022898 Ribonuclease HII GO:0004523 RY45_06365 29cda1cd3c89f237630455fca4fe0e2c 196 SUPERFAMILY SSF53098 6 194 5.92E-69 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily RY45_06365 29cda1cd3c89f237630455fca4fe0e2c 196 Pfam PF01351 Ribonuclease HII 12 187 1.5E-40 T 14-10-2018 IPR024567 Ribonuclease HII/HIII domain RY45_20240 ed1de3500ee058ebcab736082a86cf0c 132 Pfam PF10135 Rod binding protein 47 97 8.7E-11 T 14-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal RY45_07955 f287dc03f82e7f2730307840328a9a30 120 SUPERFAMILY SSF47413 13 54 2.05E-8 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RY45_07955 f287dc03f82e7f2730307840328a9a30 120 Gene3D G3DSA:1.10.260.40 9 91 2.9E-7 T 14-10-2018 RY45_15935 8ff988af3f8f390e841822f5eb332718 66 Pfam PF10725 Protein of unknown function (DUF2517) 2 61 2.2E-35 T 14-10-2018 IPR019663 Uncharacterised protein YbfA RY45_18780 b86d70b23b3eae53871c25dced4299d7 257 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 37.179 T 14-10-2018 IPR005583 Peroxide stress protein YaaA RY45_18780 b86d70b23b3eae53871c25dced4299d7 257 Pfam PF03883 Peroxide stress protein YaaA 1 243 3.2E-89 T 14-10-2018 IPR005583 Peroxide stress protein YaaA RY45_15155 3bc98e77067133a8696193b4824495da 180 SUPERFAMILY SSF49695 100 178 1.96E-13 T 14-10-2018 IPR011024 Gamma-crystallin-like RY45_15155 3bc98e77067133a8696193b4824495da 180 Gene3D G3DSA:2.60.20.10 90 179 4.4E-15 T 14-10-2018 RY45_15155 3bc98e77067133a8696193b4824495da 180 Pfam PF00030 Beta/Gamma crystallin 102 177 1.9E-8 T 14-10-2018 IPR001064 Beta/gamma crystallin RY45_15155 3bc98e77067133a8696193b4824495da 180 SMART SM00247 100 178 1.1E-5 T 14-10-2018 IPR001064 Beta/gamma crystallin RY45_21510 6d257ee01841a58021eda1438c0c180a 95 Pfam PF12305 Protein of unknown function (DUF3630) 3 94 6.5E-31 T 14-10-2018 IPR022080 Protein of unknown function DUF3630 RY45_03955 4d24000337adcf7807b2ecbd2f3c8534 200 Gene3D G3DSA:1.10.530.10 34 184 2.2E-14 T 14-10-2018 RY45_03955 4d24000337adcf7807b2ecbd2f3c8534 200 SUPERFAMILY SSF53955 17 183 9.7E-26 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily RY45_18210 e9433c7b66b0fe65f91e31549ae4c9e4 85 Pfam PF11823 Protein of unknown function (DUF3343) 7 50 1.5E-9 T 14-10-2018 IPR021778 Domain of unknown function DUF3343 RY45_04150 e9011a885f4448cf301ec73293e9340e 365 Hamap MF_01841 Agmatine deiminase [aguA]. 8 363 56.564 T 14-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 RY45_04150 e9011a885f4448cf301ec73293e9340e 365 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 17 362 3.3E-120 T 14-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 RY45_04150 e9011a885f4448cf301ec73293e9340e 365 Gene3D G3DSA:3.75.10.10 4 365 6.6E-138 T 14-10-2018 RY45_04150 e9011a885f4448cf301ec73293e9340e 365 TIGRFAM TIGR03380 agmatine_aguA: agmatine deiminase 8 362 1.2E-172 T 14-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 RY45_04150 e9011a885f4448cf301ec73293e9340e 365 SUPERFAMILY SSF55909 4 363 8.57E-139 T 14-10-2018 RY45_05015 a9737741162cbf094701b9b71679aa97 332 PIRSF PIRSF028696 1 332 5.2E-82 T 14-10-2018 IPR016896 Protein of unknown function DUF2860 RY45_05015 a9737741162cbf094701b9b71679aa97 332 Pfam PF11059 Protein of unknown function (DUF2860) 29 331 1.3E-74 T 14-10-2018 IPR016896 Protein of unknown function DUF2860 RY45_13870 5cdb07885f68e9411f16ec051a50f0c5 112 Pfam PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI 26 112 3.7E-26 T 14-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 RY45_13870 5cdb07885f68e9411f16ec051a50f0c5 112 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 74 112 8.3E-20 T 14-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 RY45_16600 6d5210b3426b9f7adaf52fc65eb98735 219 SMART SM01236 73 170 1.4E-8 T 14-10-2018 RY45_16600 6d5210b3426b9f7adaf52fc65eb98735 219 SUPERFAMILY SSF48613 1 210 2.37E-61 T 14-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RY45_16600 6d5210b3426b9f7adaf52fc65eb98735 219 Pfam PF14518 Iron-containing redox enzyme 39 206 2.8E-24 T 14-10-2018 RY45_16600 6d5210b3426b9f7adaf52fc65eb98735 219 Gene3D G3DSA:1.20.910.10 1 219 4.7E-56 T 14-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RY45_00390 f20c2af71ff9397a962913997ec0e49d 135 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 16 125 1.9E-11 T 14-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly RY45_14475 9ef6c4cd5d2240639c725025db382e8e 997 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 201 326 2.0E-7 T 14-10-2018 IPR000477 Reverse transcriptase domain RY45_14475 9ef6c4cd5d2240639c725025db382e8e 997 SUPERFAMILY SSF56317 747 970 1.14E-5 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RY45_17325 3dfce25e6858346705920f13fa7c5e2a 266 Pfam PF11207 Protein of unknown function (DUF2989) 19 217 1.3E-68 T 14-10-2018 IPR021372 Protein of unknown function DUF2989 RY45_15770 49f751322662bae76d971cfdb6b46b96 277 Gene3D G3DSA:2.30.110.10 149 246 1.2E-6 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RY45_15770 49f751322662bae76d971cfdb6b46b96 277 SUPERFAMILY SSF50475 151 270 3.93E-11 T 14-10-2018 RY45_19495 e41d9312a3da073cbf10193919213f9d 155 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 49 120 3.2E-9 T 14-10-2018 IPR006260 TonB/TolA, C-terminal RY45_19495 e41d9312a3da073cbf10193919213f9d 155 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 48 121 1.6E-18 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 RY45_19495 e41d9312a3da073cbf10193919213f9d 155 Gene3D G3DSA:3.30.1150.10 27 124 1.6E-16 T 14-10-2018 RY45_19495 e41d9312a3da073cbf10193919213f9d 155 SUPERFAMILY SSF74653 39 121 3.92E-16 T 14-10-2018 RY45_12230 f1fde7a22e4f2eb6372bb8b8c5161ea5 316 SUPERFAMILY SSF103481 68 168 2.48E-10 T 14-10-2018 RY45_12230 f1fde7a22e4f2eb6372bb8b8c5161ea5 316 Pfam PF00892 EamA-like transporter family 32 166 3.2E-9 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12230 f1fde7a22e4f2eb6372bb8b8c5161ea5 316 Pfam PF00892 EamA-like transporter family 175 304 4.1E-10 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_12230 f1fde7a22e4f2eb6372bb8b8c5161ea5 316 SUPERFAMILY SSF103481 209 307 3.79E-12 T 14-10-2018 RY45_07105 85cbfe8156cabc7b05840fe12dc3e52f 504 SUPERFAMILY SSF56436 93 295 4.71E-32 T 14-10-2018 IPR016187 C-type lectin fold RY45_07105 85cbfe8156cabc7b05840fe12dc3e52f 504 Gene3D G3DSA:3.90.1580.10 77 297 5.9E-32 T 14-10-2018 RY45_07105 85cbfe8156cabc7b05840fe12dc3e52f 504 Pfam PF03781 Sulfatase-modifying factor enzyme 1 92 295 7.8E-32 T 14-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 RY45_02735 ae789876cae9f22e807489ec4bd19d4a 556 SUPERFAMILY SSF63848 279 316 2.48E-5 T 14-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 RY45_02735 ae789876cae9f22e807489ec4bd19d4a 556 Pfam PF03961 Flagellar Assembly Protein A 87 546 2.8E-126 T 14-10-2018 IPR005646 Flagellar assembly protein A RY45_02525 8a5336c1fdf6d516e82bcee02226c71f 68 SUPERFAMILY SSF54285 3 68 2.04E-17 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RY45_02525 8a5336c1fdf6d516e82bcee02226c71f 68 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 5 68 4.2E-20 T 14-10-2018 IPR010035 ThiS, thiamine-biosynthesis RY45_02525 8a5336c1fdf6d516e82bcee02226c71f 68 Pfam PF02597 ThiS family 5 68 1.9E-15 T 14-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RY45_02525 8a5336c1fdf6d516e82bcee02226c71f 68 Gene3D G3DSA:3.10.20.30 3 68 2.8E-21 T 14-10-2018 IPR012675 Beta-grasp domain superfamily RY45_06795 b8309b547438e8814648b15f608aeadd 559 Pfam PF08479 POTRA domain, ShlB-type 79 154 5.6E-22 T 14-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type RY45_06795 b8309b547438e8814648b15f608aeadd 559 Gene3D G3DSA:3.10.20.310 66 154 7.4E-14 T 14-10-2018 RY45_06795 b8309b547438e8814648b15f608aeadd 559 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 212 521 2.7E-84 T 14-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal RY45_06795 b8309b547438e8814648b15f608aeadd 559 Gene3D G3DSA:2.40.160.50 185 559 6.0E-77 T 14-10-2018 RY45_06795 b8309b547438e8814648b15f608aeadd 559 PIRSF PIRSF029745 8 559 1.7E-126 T 14-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 RY45_06795 b8309b547438e8814648b15f608aeadd 559 Pfam PF17287 POTRA domain 155 207 8.2E-16 T 14-10-2018 IPR035251 ShlB, POTRA domain RY45_15775 597c8fe8e30c05b63a7dfe7134237b03 335 Pfam PF10282 Lactonase, 7-bladed beta-propeller 5 329 4.6E-63 T 14-10-2018 IPR019405 Lactonase, 7-bladed beta propeller RY45_15775 597c8fe8e30c05b63a7dfe7134237b03 335 Gene3D G3DSA:2.130.10.10 1 333 1.2E-97 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RY45_15775 597c8fe8e30c05b63a7dfe7134237b03 335 SUPERFAMILY SSF50956 5 118 4.45E-7 T 14-10-2018 RY45_15775 597c8fe8e30c05b63a7dfe7134237b03 335 SUPERFAMILY SSF50974 79 330 1.18E-29 T 14-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 RY45_02290 4ab8fe0c4c1424fc11deaf2e03662d2b 1238 Gene3D G3DSA:2.60.120.200 279 529 2.5E-9 T 14-10-2018 RY45_02290 4ab8fe0c4c1424fc11deaf2e03662d2b 1238 SUPERFAMILY SSF49899 302 526 1.76E-24 T 14-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RY45_03200 a0fa483887e899be9fac6f7a126f9305 348 Pfam PF04235 Protein of unknown function (DUF418) 213 346 6.4E-15 T 14-10-2018 IPR007349 Domain of unknown function DUF418 RY45_03200 a0fa483887e899be9fac6f7a126f9305 348 Pfam PF07786 Protein of unknown function (DUF1624) 7 196 2.3E-14 T 14-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 RY45_08010 6390f96a7f308d955782bf3eef8a5293 98 Pfam PF09904 Winged helix-turn helix 6 95 2.4E-40 T 14-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 RY45_08010 6390f96a7f308d955782bf3eef8a5293 98 Gene3D G3DSA:1.10.10.10 1 98 2.7E-40 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_08010 6390f96a7f308d955782bf3eef8a5293 98 PIRSF PIRSF037266 1 98 2.2E-39 T 14-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 RY45_05805 801aed5c6f263a976d05c14dfc28dbdb 342 Pfam PF06379 L-rhamnose-proton symport protein (RhaT) 2 342 9.9E-145 T 14-10-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 RY45_18930 c00e099c26b67a2f64c923db3132658f 260 TIGRFAM TIGR04255 sporadTIGR04255: TIGR04255 family protein 4 259 4.7E-37 T 14-10-2018 IPR026349 Conserved hypothetical protein CHP04255 RY45_09295 01a48ac457020c310484c24f2e072582 468 Pfam PF07196 Flagellin hook IN motif 131 185 2.3E-10 T 14-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 RY45_09295 01a48ac457020c310484c24f2e072582 468 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 216 455 2.7E-40 T 14-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 RY45_09295 01a48ac457020c310484c24f2e072582 468 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 110 8.7E-14 T 14-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 RY45_12490 201c1d132213939bcbcdb1a830afb562 533 SUPERFAMILY SSF52096 237 515 3.08E-84 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_12490 201c1d132213939bcbcdb1a830afb562 533 SUPERFAMILY SSF52096 22 268 1.9E-71 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RY45_12490 201c1d132213939bcbcdb1a830afb562 533 Gene3D G3DSA:3.90.226.10 272 533 3.3E-102 T 14-10-2018 RY45_12490 201c1d132213939bcbcdb1a830afb562 533 Gene3D G3DSA:3.90.226.10 1 269 1.9E-97 T 14-10-2018 RY45_12490 201c1d132213939bcbcdb1a830afb562 533 Pfam PF01039 Carboxyl transferase domain 48 517 1.7E-146 T 14-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RY45_06020 d702f494dbe34e268b594d97b93ab412 289 Pfam PF13503 Domain of unknown function (DUF4123) 20 133 2.5E-14 T 14-10-2018 IPR025391 Domain of unknown function DUF4123 RY45_04140 eabcaa528d3f3597c2852d7075864af1 111 Pfam PF04480 Protein of unknown function (DUF559) 3 110 1.5E-40 T 14-10-2018 IPR007569 Protein of unknown function DUF559 RY45_04140 eabcaa528d3f3597c2852d7075864af1 111 Gene3D G3DSA:3.40.960.10 12 111 4.4E-31 T 14-10-2018 RY45_04140 eabcaa528d3f3597c2852d7075864af1 111 SUPERFAMILY SSF52980 6 106 1.72E-20 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RY45_12990 3f3ce0be5bf3c03ae5267cbd132385df 317 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 47 62 - T 14-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_12990 3f3ce0be5bf3c03ae5267cbd132385df 317 Pfam PF00146 NADH dehydrogenase 17 311 4.1E-47 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_15450 fb1b311c984ab0e9137c9526fb5bafdc 113 Pfam PF05656 Protein of unknown function (DUF805) 11 110 3.5E-28 T 14-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 RY45_07215 6759882d90fe23822506883133702374 146 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 8 139 9.3E-22 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RY45_07215 6759882d90fe23822506883133702374 146 Pfam PF02050 Flagellar FliJ protein 17 139 6.6E-27 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RY45_03445 321ab6ab33ed8ad45371aeb4b22ef181 113 Pfam PF06961 Protein of unknown function (DUF1294) 32 86 2.6E-23 T 14-10-2018 IPR010718 Protein of unknown function DUF1294 RY45_03445 321ab6ab33ed8ad45371aeb4b22ef181 113 PIRSF PIRSF002599 12 112 3.2E-20 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 RY45_11420 477dfd69ae77379ca781825956d95657 73 Pfam PF11197 Protein of unknown function (DUF2835) 4 71 2.7E-23 T 14-10-2018 IPR021363 Protein of unknown function DUF2835 RY45_01450 f88cffb36fdacf7c7eba47fcb5a67ef7 224 Pfam PF06206 CpeT/CpcT family (DUF1001) 43 216 3.6E-36 T 14-10-2018 IPR010404 Chromophore lyase CpcT/CpeT GO:0016829|GO:0017009 RY45_01450 f88cffb36fdacf7c7eba47fcb5a67ef7 224 Gene3D G3DSA:2.40.128.590 35 223 6.3E-32 T 14-10-2018 IPR038672 Chromophore lyase CpcT/CpeT superfamily RY45_22310 fee332cf2bb04b74d809ced6319d378d 133 Pfam PF05713 Bacterial mobilisation protein (MobC) 70 111 2.3E-8 T 14-10-2018 IPR008687 Bacterial mobilisation RY45_08420 9670e5ec64faf4186c862174e88b7446 186 Pfam PF01625 Peptide methionine sulfoxide reductase 25 156 8.0E-16 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RY45_08420 9670e5ec64faf4186c862174e88b7446 186 Gene3D G3DSA:3.30.1060.10 19 166 1.3E-20 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RY45_08420 9670e5ec64faf4186c862174e88b7446 186 SUPERFAMILY SSF55068 18 178 9.16E-31 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RY45_14435 550d9e8a0e4b7a5111bdf55c14f4d7cb 185 Pfam PF01169 Uncharacterized protein family UPF0016 104 178 8.3E-23 T 14-10-2018 IPR001727 Gdt1 family RY45_14435 550d9e8a0e4b7a5111bdf55c14f4d7cb 185 Pfam PF01169 Uncharacterized protein family UPF0016 5 80 6.0E-20 T 14-10-2018 IPR001727 Gdt1 family RY45_05415 247a8c3a09ff90651c233ac5f268b872 134 SUPERFAMILY SSF82784 1 131 3.27E-42 T 14-10-2018 IPR036102 OsmC/Ohr superfamily RY45_05415 247a8c3a09ff90651c233ac5f268b872 134 Gene3D G3DSA:3.30.300.20 36 134 9.0E-33 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta RY45_05415 247a8c3a09ff90651c233ac5f268b872 134 Pfam PF02566 OsmC-like protein 31 127 5.9E-20 T 14-10-2018 IPR003718 OsmC/Ohr family RY45_05415 247a8c3a09ff90651c233ac5f268b872 134 Gene3D G3DSA:2.20.25.10 1 35 2.6E-17 T 14-10-2018 RY45_09085 d440210263175b6febe600db41b9acd0 185 Pfam PF07603 Protein of unknown function (DUF1566) 42 185 5.4E-23 T 14-10-2018 IPR011460 Protein of unknown function DUF1566 RY45_02805 c9d53b86f167af21d3b9bba6571b8f7e 177 PRINTS PR01837 MgtC/SapB protein signature 93 117 9.8E-31 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_02805 c9d53b86f167af21d3b9bba6571b8f7e 177 PRINTS PR01837 MgtC/SapB protein signature 39 57 9.8E-31 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_02805 c9d53b86f167af21d3b9bba6571b8f7e 177 PRINTS PR01837 MgtC/SapB protein signature 20 39 9.8E-31 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_02805 c9d53b86f167af21d3b9bba6571b8f7e 177 PRINTS PR01837 MgtC/SapB protein signature 66 88 9.8E-31 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_02805 c9d53b86f167af21d3b9bba6571b8f7e 177 Pfam PF02308 MgtC family 17 138 1.8E-27 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RY45_06255 ab7f1ab1bd67723f980b20e65853fc85 146 PRINTS PR00369 Flavodoxin signature 106 125 9.6E-6 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_06255 ab7f1ab1bd67723f980b20e65853fc85 146 PRINTS PR00369 Flavodoxin signature 82 92 9.6E-6 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_06255 ab7f1ab1bd67723f980b20e65853fc85 146 PRINTS PR00369 Flavodoxin signature 51 62 9.6E-6 T 14-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RY45_06255 ab7f1ab1bd67723f980b20e65853fc85 146 Gene3D G3DSA:3.40.50.360 1 146 6.8E-45 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_06255 ab7f1ab1bd67723f980b20e65853fc85 146 SUPERFAMILY SSF52218 1 146 3.35E-40 T 14-10-2018 IPR029039 Flavoprotein-like superfamily RY45_06255 ab7f1ab1bd67723f980b20e65853fc85 146 Pfam PF00258 Flavodoxin 6 138 1.6E-24 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RY45_13075 dd96c34879934d64be26b8017a47cca1 336 Gene3D G3DSA:1.10.3720.10 101 328 5.4E-16 T 14-10-2018 IPR035906 MetI-like superfamily RY45_13075 dd96c34879934d64be26b8017a47cca1 336 SUPERFAMILY SSF161098 105 314 1.31E-16 T 14-10-2018 IPR035906 MetI-like superfamily RY45_13075 dd96c34879934d64be26b8017a47cca1 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 127 329 4.5E-38 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RY45_21595 3f3ca7c8d424f6cc0fcdd9155942fe9d 148 Pfam PF06127 Protein of unknown function (DUF962) 1 143 5.1E-21 T 14-10-2018 IPR009305 Protein of unknown function DUF962 RY45_12110 f41ec8210628e63e54ef360a7d3a2730 432 SUPERFAMILY SSF56935 25 432 9.16E-100 T 14-10-2018 RY45_12110 f41ec8210628e63e54ef360a7d3a2730 432 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 16 432 7.6E-133 T 14-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) RY45_12110 f41ec8210628e63e54ef360a7d3a2730 432 Gene3D G3DSA:2.40.160.60 25 432 6.9E-142 T 14-10-2018 RY45_09320 af76108343689828a8e2556c8851caca 316 Pfam PF03186 CobD/Cbib protein 19 288 1.1E-23 T 14-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 RY45_17930 304a6a070fe4b1baa6f650c2f5f46187 815 Pfam PF02687 FtsX-like permease family 278 368 3.9E-9 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RY45_19045 b2a3d1e7a61c876d8fc69abcbf71ab78 151 Pfam PF10772 Protein of unknown function (DUF2597) 9 141 5.5E-61 T 14-10-2018 IPR019708 Bacteriophage HP1, Orf24 RY45_15835 0ebd3dc83f1f05379801c35fcb0c47ac 200 Pfam PF11748 Protein of unknown function (DUF3306) 3 117 2.5E-15 T 14-10-2018 IPR021735 Protein of unknown function DUF3306 RY45_15605 e041fa9c436a47ed4f1d8ded9003791f 159 SUPERFAMILY SSF89562 3 157 6.28E-47 T 14-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily RY45_15605 e041fa9c436a47ed4f1d8ded9003791f 159 Pfam PF03737 Aldolase/RraA 7 153 1.6E-41 T 14-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RY45_15605 e041fa9c436a47ed4f1d8ded9003791f 159 Gene3D G3DSA:3.50.30.40 1 159 7.4E-61 T 14-10-2018 RY45_15605 e041fa9c436a47ed4f1d8ded9003791f 159 TIGRFAM TIGR01935 NOT-MenG: RraA family 6 154 1.3E-65 T 14-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 RY45_11310 04abf3cb1b74bf898b7ae62fe7c7cb73 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 4.6E-51 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RY45_00600 ec1fa8e60db5441b4d27a1a023b0ce44 170 Pfam PF06892 Phage regulatory protein CII (CP76) 6 163 6.6E-40 T 14-10-2018 IPR009679 Bacteriophage 186, CII RY45_22160 235642bef5788c2784d91da6cd903955 136 Pfam PF03899 ATP synthase I chain 22 119 3.0E-14 T 14-10-2018 IPR005598 ATP synthase protein I RY45_05425 23756747069cd53269fc35a727d2b8a1 176 Pfam PF13590 Domain of unknown function (DUF4136) 41 175 1.3E-10 T 14-10-2018 IPR025411 Domain of unknown function DUF4136 RY45_05160 bfd247c635270d4c3955c7891146056b 456 Pfam PF07670 Nucleoside recognition 142 236 1.6E-7 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RY45_11490 148a100fa44d4a282d082ed60d02c912 193 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 14 123 2.5E-35 T 14-10-2018 IPR008769 Poly granule associated RY45_03910 8b9031b02aa767df57bfe96a1392a084 1117 Pfam PF05567 Neisseria PilC beta-propeller domain 602 929 2.5E-72 T 14-10-2018 IPR008707 PilC beta-propeller domain RY45_03910 8b9031b02aa767df57bfe96a1392a084 1117 ProSitePatterns PS00018 EF-hand calcium-binding domain. 1037 1049 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site RY45_03910 8b9031b02aa767df57bfe96a1392a084 1117 SUPERFAMILY SSF50998 649 899 1.88E-7 T 14-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RY45_20820 b66092b552b56db6691b73a876d316fb 277 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 5 208 1.9E-15 T 14-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 RY45_20820 b66092b552b56db6691b73a876d316fb 277 Gene3D G3DSA:3.40.720.10 1 274 4.8E-34 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RY45_20820 b66092b552b56db6691b73a876d316fb 277 SUPERFAMILY SSF53649 2 256 4.58E-48 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RY45_09725 4e0797ca35a00ef42e438bc1ce62d577 205 Gene3D G3DSA:3.10.310.50 83 200 1.2E-27 T 14-10-2018 RY45_09725 4e0797ca35a00ef42e438bc1ce62d577 205 Pfam PF04536 TPM domain 108 179 1.7E-8 T 14-10-2018 IPR007621 TPM domain RY45_01265 bfe7d9823263db91295c9de717c3da4f 179 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 1.9E-8 T 14-10-2018 IPR001451 Hexapeptide repeat RY45_01265 bfe7d9823263db91295c9de717c3da4f 179 SUPERFAMILY SSF51161 6 176 3.47E-44 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily RY45_01265 bfe7d9823263db91295c9de717c3da4f 179 Gene3D G3DSA:2.160.10.10 4 179 3.9E-53 T 14-10-2018 RY45_19140 5c8f685b6bf159531544bd535f8e4000 173 Pfam PF06271 RDD family 22 155 3.6E-16 T 14-10-2018 IPR010432 RDD RY45_05000 90c1caa44ae7fd01d8b679a54c08f3e6 213 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 33 208 1.8E-35 T 14-10-2018 IPR018635 Uncharacterised protein family UPF0319 RY45_14500 2288b3c4dcae3a470e874a0dbebdde22 317 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 5 317 2.6E-135 T 14-10-2018 IPR017566 NrfD RY45_14500 2288b3c4dcae3a470e874a0dbebdde22 317 Gene3D G3DSA:1.20.1630.10 7 236 6.7E-14 T 14-10-2018 RY45_14500 2288b3c4dcae3a470e874a0dbebdde22 317 Pfam PF03916 Polysulphide reductase, NrfD 5 316 8.9E-83 T 14-10-2018 IPR005614 NrfD family RY45_18700 fc6736157adbb39e41f7ae9c5c0b9cc8 225 SUPERFAMILY SSF51735 3 213 9.58E-45 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily RY45_18700 fc6736157adbb39e41f7ae9c5c0b9cc8 225 Pfam PF00106 short chain dehydrogenase 3 187 4.9E-33 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_18700 fc6736157adbb39e41f7ae9c5c0b9cc8 225 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RY45_18700 fc6736157adbb39e41f7ae9c5c0b9cc8 225 Gene3D G3DSA:3.40.50.720 2 225 1.4E-55 T 14-10-2018 RY45_18700 fc6736157adbb39e41f7ae9c5c0b9cc8 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.4E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_18700 fc6736157adbb39e41f7ae9c5c0b9cc8 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.4E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_18700 fc6736157adbb39e41f7ae9c5c0b9cc8 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.4E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_18700 fc6736157adbb39e41f7ae9c5c0b9cc8 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.4E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RY45_17595 904650e0567f404e24702927e5649636 168 Gene3D G3DSA:3.40.1280.10 26 166 1.6E-15 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RY45_17595 904650e0567f404e24702927e5649636 168 Pfam PF00588 SpoU rRNA Methylase family 26 158 2.1E-17 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RY45_17595 904650e0567f404e24702927e5649636 168 SUPERFAMILY SSF75217 25 165 3.77E-26 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases RY45_09275 44b51648d097313dade64627e39fc883 210 Pfam PF03458 UPF0126 domain 11 84 2.6E-21 T 14-10-2018 IPR005115 Uncharacterised domain UPF0126 RY45_09275 44b51648d097313dade64627e39fc883 210 Pfam PF03458 UPF0126 domain 98 170 1.9E-22 T 14-10-2018 IPR005115 Uncharacterised domain UPF0126 RY45_05910 f3bc61b2c925afbe78fff66847e50c45 72 Pfam PF09493 Tryptophan-rich protein (DUF2389) 12 71 2.1E-16 T 14-10-2018 IPR012663 Conserved hypothetical protein CHP02450, tryptophan-rich RY45_14915 55327e60eb213ff3d2fa57ceddfbe28f 130 Pfam PF11042 Protein of unknown function (DUF2750) 23 121 8.7E-37 T 14-10-2018 IPR021284 Protein of unknown function DUF2750 RY45_03900 ed6f9bbdf9b156e0d8bfb8f4895b4190 364 Pfam PF16074 Type IV Pilus-assembly protein W 250 361 8.9E-16 T 14-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 RY45_19935 d6e317351efa31a60c09978f2d0a9af1 160 Pfam PF04073 Aminoacyl-tRNA editing domain 32 144 5.4E-19 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RY45_19935 d6e317351efa31a60c09978f2d0a9af1 160 Gene3D G3DSA:3.90.960.10 14 159 1.2E-24 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RY45_19935 d6e317351efa31a60c09978f2d0a9af1 160 SUPERFAMILY SSF55826 16 157 1.7E-26 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RY45_06975 da2e19906df8e6e6ac8bbef892d42646 420 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 419 8.7E-27 T 14-10-2018 IPR010352 Protein of unknown function DUF945 RY45_01445 5b85358205719e2bfb1b8b59fc12cbbd 218 Pfam PF11769 Protein of unknown function (DUF3313) 13 206 1.3E-43 T 14-10-2018 IPR021747 Protein of unknown function DUF3313 RY45_21210 654231cde161ffeaea8a2b9090b90a5a 178 Pfam PF10063 Uncharacterized integral membrane protein (DUF2301) 94 175 3.9E-11 T 14-10-2018 IPR019275 Protein of unknown function DUF2301 RY45_00750 b08c6742a0ab9926fb70ade581008d69 326 Pfam PF14321 Domain of unknown function (DUF4382) 30 205 1.4E-24 T 14-10-2018 IPR025491 Domain of unknown function DUF4382 RY45_15305 db7e508efef571f04519b7baa5931686 118 Pfam PF11604 Copper binding periplasmic protein CusF 51 117 8.9E-27 T 14-10-2018 IPR021647 Copper binding periplasmic protein CusF RY45_15305 db7e508efef571f04519b7baa5931686 118 Gene3D G3DSA:2.40.50.320 45 118 1.4E-23 T 14-10-2018 RY45_10615 e36c3e3f55edf829f663727de127f286 153 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 8 142 7.3E-17 T 14-10-2018 IPR009936 Protein of unknown function DUF1468 RY45_03540 470ea5e53c491839ebc0c6c559af6fad 113 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 3 100 2.4E-15 T 14-10-2018 IPR008407 Branched-chain amino acid transport, AzlD RY45_11545 b8bcb88e00ead1976185878ce69374df 202 Pfam PF04403 Paraquat-inducible protein A 45 199 8.2E-45 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like RY45_03570 3197b37289f6afdb6d28d58321d7488b 91 Gene3D G3DSA:1.20.58.1000 1 91 8.7E-30 T 14-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily RY45_03570 3197b37289f6afdb6d28d58321d7488b 91 Pfam PF02583 Metal-sensitive transcriptional repressor 8 87 1.1E-22 T 14-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 RY45_13890 8ad407c1da6a6af0275c025ea3a6ca56 70 Gene3D G3DSA:1.20.5.420 1 67 1.9E-38 T 14-10-2018 RY45_13890 8ad407c1da6a6af0275c025ea3a6ca56 70 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 2 66 4.5E-17 T 14-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 RY45_13890 8ad407c1da6a6af0275c025ea3a6ca56 70 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 2 66 4.0E-25 T 14-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 RY45_02405 f6e3c73bc8face0d49e0ddcc4b8510e6 124 Gene3D G3DSA:3.30.750.24 6 123 8.2E-15 T 14-10-2018 IPR036513 STAS domain superfamily RY45_02405 f6e3c73bc8face0d49e0ddcc4b8510e6 124 SUPERFAMILY SSF52091 10 116 1.0E-8 T 14-10-2018 IPR036513 STAS domain superfamily RY45_20900 597598662f3a1a740ceb09b291ef66d2 361 Pfam PF01594 AI-2E family transporter 15 343 9.6E-33 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like RY45_14275 7dc5a38550f574ec516370d9382a02b7 212 Pfam PF11140 Protein of unknown function (DUF2913) 5 209 1.1E-74 T 14-10-2018 IPR021316 Protein of unknown function DUF2913 RY45_05260 73322d2c7e28c8ddce05e682897bfa9e 191 SUPERFAMILY SSF51206 33 144 2.36E-13 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like RY45_05260 73322d2c7e28c8ddce05e682897bfa9e 191 Pfam PF00027 Cyclic nucleotide-binding domain 35 113 2.1E-6 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain RY45_05260 73322d2c7e28c8ddce05e682897bfa9e 191 Gene3D G3DSA:2.60.120.10 25 142 7.5E-14 T 14-10-2018 IPR014710 RmlC-like jelly roll fold RY45_01210 574d486b4681660ce4099a195440acb0 208 SUPERFAMILY SSF52833 38 188 1.2E-42 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_01210 574d486b4681660ce4099a195440acb0 208 Gene3D G3DSA:3.40.30.10 39 190 3.8E-41 T 14-10-2018 RY45_01210 574d486b4681660ce4099a195440acb0 208 Pfam PF02630 SCO1/SenC 42 176 1.7E-27 T 14-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RY45_18495 9e03c2b800622fe69addf9e8f304ff10 187 Pfam PF10973 Protein of unknown function (DUF2799) 30 112 1.2E-23 T 14-10-2018 IPR021242 Protein of unknown function DUF2799 RY45_13245 04751cb7ca5302700e9f79b1f512a91b 815 Pfam PF02687 FtsX-like permease family 725 814 1.2E-9 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RY45_13245 04751cb7ca5302700e9f79b1f512a91b 815 Pfam PF12704 MacB-like periplasmic core domain 479 635 2.1E-9 T 14-10-2018 IPR025857 MacB-like periplasmic core domain RY45_14385 71eb3447554fbb6e593d2230cbb55c89 335 SUPERFAMILY SSF81345 8 329 1.16E-75 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_14385 71eb3447554fbb6e593d2230cbb55c89 335 Pfam PF01032 FecCD transport family 23 328 7.7E-79 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RY45_14385 71eb3447554fbb6e593d2230cbb55c89 335 Gene3D G3DSA:1.10.3470.10 3 330 6.1E-96 T 14-10-2018 IPR037294 ABC transporter, BtuC-like RY45_15930 53b0ce8c08e302b8d7235357da4121e3 87 Pfam PF10048 Predicted integral membrane protein (DUF2282) 34 84 4.2E-23 T 14-10-2018 IPR018740 Protein of unknown function DUF2282, integral membrane RY45_16650 4ba1c0eafc6564e22b6d61192f9d251b 250 Pfam PF12048 Protein of unknown function (DUF3530) 111 239 1.2E-19 T 14-10-2018 IPR022529 Protein of unknown function DUF3530 RY45_07525 436eb2048a3132738bc39a7543fcc33a 414 Gene3D G3DSA:3.20.20.70 4 358 1.4E-105 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RY45_07525 436eb2048a3132738bc39a7543fcc33a 414 SUPERFAMILY SSF51395 4 346 5.8E-94 T 14-10-2018 RY45_07525 436eb2048a3132738bc39a7543fcc33a 414 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 340 8.9E-45 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RY45_10670 d5931be73c12c695c3cfa45c054635ef 505 Pfam PF04293 SpoVR like protein 16 446 3.4E-174 T 14-10-2018 IPR007390 Sporulation stage V, protein R RY45_19150 57a8e7a3ebb82ff4ac7c61855352f052 370 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 4 345 3.5E-117 T 14-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 RY45_19150 57a8e7a3ebb82ff4ac7c61855352f052 370 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 345 1.6E-75 T 14-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 RY45_21130 e6018e125f4d4b3fe7c084d813b58e3d 376 PIRSF PIRSF000014 3 376 4.9E-139 T 14-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 RY45_21130 e6018e125f4d4b3fe7c084d813b58e3d 376 SUPERFAMILY SSF46626 317 368 3.46E-5 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RY45_21130 e6018e125f4d4b3fe7c084d813b58e3d 376 Gene3D G3DSA:1.10.3820.10 4 181 1.0E-37 T 14-10-2018 IPR038266 NapC/NirT cytochrome c superfamily RY45_21130 e6018e125f4d4b3fe7c084d813b58e3d 376 SUPERFAMILY SSF48695 9 178 9.09E-48 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily RY45_21130 e6018e125f4d4b3fe7c084d813b58e3d 376 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 8 176 2.6E-66 T 14-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal RY45_16935 6681802778d3325b165d7136e4e478ab 278 Gene3D G3DSA:3.40.1090.10 1 86 1.7E-10 T 14-10-2018 RY45_16935 6681802778d3325b165d7136e4e478ab 278 Gene3D G3DSA:3.40.1090.10 92 229 1.7E-9 T 14-10-2018 RY45_16935 6681802778d3325b165d7136e4e478ab 278 Pfam PF01734 Patatin-like phospholipase 8 173 6.3E-17 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RY45_16935 6681802778d3325b165d7136e4e478ab 278 SUPERFAMILY SSF52151 1 272 2.07E-40 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RY45_02635 1f6d7f6ec34cb71c5ce9a4b49aecac2d 354 Pfam PF13609 Gram-negative porin 6 328 4.9E-28 T 14-10-2018 RY45_02635 1f6d7f6ec34cb71c5ce9a4b49aecac2d 354 Gene3D G3DSA:2.40.160.10 20 354 1.2E-78 T 14-10-2018 IPR023614 Porin domain superfamily RY45_02635 1f6d7f6ec34cb71c5ce9a4b49aecac2d 354 SUPERFAMILY SSF56935 20 354 7.63E-50 T 14-10-2018 RY45_01995 ba21720bcaecff812e82c44efe684404 328 Pfam PF13280 WYL domain 154 319 1.3E-12 T 14-10-2018 IPR026881 WYL domain RY45_17600 556be2639c187615ed22f5dcc8f2b3bd 246 SUPERFAMILY SSF53850 17 225 6.19E-18 T 14-10-2018 RY45_09500 f7db82da9880b7c7ca1b9fd42aac316e 290 Pfam PF01136 Peptidase family U32 84 195 2.0E-12 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RY45_08455 aaf74e01d5d6d701879e9792041d3a99 171 Pfam PF11993 Ribosomal S4P (gammaproteobacterial) 3 162 4.5E-42 T 14-10-2018 IPR021879 Ribosomal S4P (gammaproteobacterial) RY45_09650 c71ed06fb061d4dca6c3634a21b4d63b 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 2.3E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09650 c71ed06fb061d4dca6c3634a21b4d63b 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 2.3E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09650 c71ed06fb061d4dca6c3634a21b4d63b 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 2.3E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09650 c71ed06fb061d4dca6c3634a21b4d63b 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 2.3E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09650 c71ed06fb061d4dca6c3634a21b4d63b 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 2.3E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09650 c71ed06fb061d4dca6c3634a21b4d63b 506 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 5 492 8.1E-174 T 14-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_09650 c71ed06fb061d4dca6c3634a21b4d63b 506 Pfam PF00361 Proton-conducting membrane transporter 133 431 1.0E-69 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RY45_14290 4d685b8cd42f3db4dccaa93d8b051484 216 Pfam PF09335 SNARE associated Golgi protein 44 169 5.3E-16 T 14-10-2018 IPR032816 SNARE associated Golgi protein RY45_10855 bacc98f03aac3258b1b1cc8a1dcd04be 202 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 99 189 5.1E-21 T 14-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RY45_10855 bacc98f03aac3258b1b1cc8a1dcd04be 202 Gene3D G3DSA:2.60.120.620 3 192 6.5E-54 T 14-10-2018 RY45_10855 bacc98f03aac3258b1b1cc8a1dcd04be 202 SMART SM00702 13 189 1.1E-28 T 14-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 RY45_15535 36283459f7e61c24d74461efc105ff44 233 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 233 45.408 T 14-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RY45_15535 36283459f7e61c24d74461efc105ff44 233 Pfam PF01048 Phosphorylase superfamily 15 218 1.2E-34 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RY45_15535 36283459f7e61c24d74461efc105ff44 233 Gene3D G3DSA:3.40.50.1580 2 233 7.1E-70 T 14-10-2018 RY45_15535 36283459f7e61c24d74461efc105ff44 233 SUPERFAMILY SSF53167 2 232 6.68E-84 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RY45_15535 36283459f7e61c24d74461efc105ff44 233 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 232 5.2E-92 T 14-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RY45_18895 b56973f0715c2175b1fad47b091ec272 56 TIGRFAM TIGR03510 XapX: XapX domain 3 50 2.7E-20 T 14-10-2018 IPR020017 XapX domain RY45_02150 4ed86b18c1eea8d1a6dd1438f620a45b 317 PIRSF PIRSF003097 16 313 7.1E-73 T 14-10-2018 IPR004513 Cell division protein FtsX GO:0016021 RY45_21660 c1b84f2b022857503734d0a88b32ba52 395 SUPERFAMILY SSF53720 81 308 7.98E-11 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RY45_21660 c1b84f2b022857503734d0a88b32ba52 395 Pfam PF05893 Acyl-CoA reductase (LuxC) 77 247 3.0E-26 T 14-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 RY45_02125 1d5b4a9f82de932c22101bcb94d6043e 125 Pfam PF07226 Protein of unknown function (DUF1422) 8 117 1.1E-44 T 14-10-2018 IPR009867 Protein of unknown function DUF1422 RY45_02125 1d5b4a9f82de932c22101bcb94d6043e 125 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 5 99 1.0E-19 T 14-10-2018 IPR009867 Protein of unknown function DUF1422 RY45_02920 05389f29e3a25048256efde8c2757bd8 115 Gene3D G3DSA:1.10.3730.20 1 106 2.0E-34 T 14-10-2018 RY45_02920 05389f29e3a25048256efde8c2757bd8 115 Pfam PF00893 Small Multidrug Resistance protein 3 94 7.1E-32 T 14-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RY45_02920 05389f29e3a25048256efde8c2757bd8 115 SUPERFAMILY SSF103481 5 107 1.44E-19 T 14-10-2018 RY45_01725 7d7e9d42725c13d05a7b053b4f935578 446 Pfam PF02447 GntP family permease 5 442 1.6E-149 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RY45_01725 7d7e9d42725c13d05a7b053b4f935578 446 PIRSF PIRSF002746 1 446 4.3E-152 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RY45_01725 7d7e9d42725c13d05a7b053b4f935578 446 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 444 7.7E-148 T 14-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RY45_16950 a828ce6991b60b199b544af156e3ad88 368 Pfam PF03916 Polysulphide reductase, NrfD 10 308 4.3E-22 T 14-10-2018 IPR005614 NrfD family RY45_05540 3c962873751889c424f5a2e5a7b13c6a 113 Pfam PF11169 Protein of unknown function (DUF2956) 8 110 6.2E-41 T 14-10-2018 IPR021339 Protein of unknown function DUF2956 RY45_00440 ab58874868ffb095edd266141beb85e6 102 Pfam PF05449 Putative 3TM holin, Phage_holin_3 7 83 5.9E-21 T 14-10-2018 IPR008473 Putative 3TM holin, Phage holin 3 RY45_01460 26ecd9480282fcc5e1d769b070d76fb4 206 Pfam PF01810 LysE type translocator 16 203 2.5E-28 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_19565 03bbe3f70a6e45672b235346cb138cec 292 SUPERFAMILY SSF53850 86 250 5.97E-16 T 14-10-2018 RY45_07345 8cf807b63a30ba18a3957a811c22f41a 246 Pfam PF01578 Cytochrome C assembly protein 26 184 3.6E-32 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RY45_07345 8cf807b63a30ba18a3957a811c22f41a 246 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 227 1.8E-81 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07345 8cf807b63a30ba18a3957a811c22f41a 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 1.9E-61 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07345 8cf807b63a30ba18a3957a811c22f41a 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 1.9E-61 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07345 8cf807b63a30ba18a3957a811c22f41a 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 204 228 1.9E-61 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07345 8cf807b63a30ba18a3957a811c22f41a 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 1.9E-61 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07345 8cf807b63a30ba18a3957a811c22f41a 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 1.9E-61 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_07345 8cf807b63a30ba18a3957a811c22f41a 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 1.9E-61 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RY45_15900 4f85ed84d2a5cada16cb7bc06bc22a02 206 Pfam PF11810 Domain of unknown function (DUF3332) 31 199 4.8E-42 T 14-10-2018 IPR021768 Protein of unknown function DUF3332 RY45_17610 b62538017c5566db9d5e925419b249cf 211 Pfam PF13645 L,D-transpeptidase catalytic domain 46 210 7.8E-67 T 14-10-2018 IPR032676 Putative L,D-transpeptidase tautomerase RY45_03510 d78f336c82e9b69f96cd01c28ab0eaf9 731 Pfam PF11308 Glycosyl hydrolases related to GH101 family, GH129 364 687 2.8E-144 T 14-10-2018 IPR021459 Glycosyl hydrolases related to GH101 family, GHL1-GHL3 RY45_11355 74f86abf8a10785728aa7fae042672a3 228 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 10 218 3.1E-50 T 14-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain RY45_17110 c5aac46ace01ab75d57fcb36cd05e5ff 252 Pfam PF01618 MotA/TolQ/ExbB proton channel family 99 212 9.4E-21 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_17110 c5aac46ace01ab75d57fcb36cd05e5ff 252 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 182 199 - T 14-10-2018 IPR000540 Flagellar motor protein MotA, conserved site RY45_05075 a74f5eedd853050cdad12fc2bf88798c 151 Gene3D G3DSA:1.20.1260.10 4 145 4.8E-5 T 14-10-2018 IPR012347 Ferritin-like RY45_18800 5799bee51e159f6a829e351d96663395 440 Pfam PF05525 Branched-chain amino acid transport protein 8 429 1.1E-133 T 14-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RY45_18800 5799bee51e159f6a829e351d96663395 440 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 418 4.5E-123 T 14-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RY45_19780 7930ddef5ff99cb4d4e10993cdb29b1c 316 Pfam PF03547 Membrane transport protein 16 148 7.5E-10 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RY45_09160 8a0177b2b8fbd53f0f824e478b3f6ae3 356 Pfam PF01594 AI-2E family transporter 20 345 1.4E-75 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like RY45_12645 2c87d9858c31603c827869f732563c6b 411 Pfam PF02687 FtsX-like permease family 304 404 1.8E-8 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RY45_12645 2c87d9858c31603c827869f732563c6b 411 Pfam PF12704 MacB-like periplasmic core domain 31 243 4.7E-16 T 14-10-2018 IPR025857 MacB-like periplasmic core domain RY45_12645 2c87d9858c31603c827869f732563c6b 411 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 8 411 1.3E-132 T 14-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RY45_13350 02cca4b8483c17276b350aecae870e6f 362 SUPERFAMILY SSF56112 48 195 4.19E-12 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily RY45_18050 484fa9aff52c14b8a0cc1657c2d96e30 210 PIRSF PIRSF006324 1 210 2.3E-49 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_18050 484fa9aff52c14b8a0cc1657c2d96e30 210 Pfam PF01810 LysE type translocator 16 209 3.4E-35 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RY45_18225 b946d1aa84d314da9e98891fb307c28b 257 Pfam PF01061 ABC-2 type transporter 10 219 6.4E-39 T 14-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RY45_18225 b946d1aa84d314da9e98891fb307c28b 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 139 163 2.9E-9 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RY45_18225 b946d1aa84d314da9e98891fb307c28b 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 177 196 2.9E-9 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RY45_18225 b946d1aa84d314da9e98891fb307c28b 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 59 81 2.9E-9 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RY45_18225 b946d1aa84d314da9e98891fb307c28b 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 2.9E-9 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RY45_18225 b946d1aa84d314da9e98891fb307c28b 257 PIRSF PIRSF006648 13 254 3.0E-22 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RY45_11360 26c31deb798e4f494a26de8ddf51818a 63 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 2.1E-19 T 14-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type RY45_11360 26c31deb798e4f494a26de8ddf51818a 63 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 46 8.8E-15 T 14-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type RY45_10885 568456cbf9eb185244588e266ce901f1 303 SUPERFAMILY SSF103481 35 136 1.15E-10 T 14-10-2018 RY45_10885 568456cbf9eb185244588e266ce901f1 303 Pfam PF00892 EamA-like transporter family 4 134 5.8E-10 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_10885 568456cbf9eb185244588e266ce901f1 303 Pfam PF00892 EamA-like transporter family 149 285 8.5E-13 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RY45_10885 568456cbf9eb185244588e266ce901f1 303 SUPERFAMILY SSF103481 185 289 3.92E-7 T 14-10-2018 RY45_09230 6317513b35f132cfb3d91d4534a99ba2 213 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 7 201 6.5E-7 T 14-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 RY45_05280 7cd249e8b3e6fa8a8098c8951cf56eea 93 Pfam PF01391 Collagen triple helix repeat (20 copies) 35 90 1.6E-8 T 14-10-2018 IPR008160 Collagen triple helix repeat RY45_07810 e7f28eae882b9c3b0448882f13dc88b6 140 Gene3D G3DSA:3.40.960.10 48 128 4.9E-8 T 14-10-2018 RY45_08525 6308db27ebd78acd3099bbea3feec73c 421 TIGRFAM TIGR03503 TIGR03503: TIGR03503 family protein 26 392 1.2E-134 T 14-10-2018 IPR020010 Conserved hypothetical protein CHP03503 RY45_05380 63023b7937491b35ee94561ba47aab26 203 Pfam PF11188 Protein of unknown function (DUF2975) 71 203 8.2E-18 T 14-10-2018 IPR021354 Protein of unknown function DUF2975 RY45_01365 71eaed576c4a8530a034a6e1b27e4427 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 296 1.0E-36 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RY45_10135 4e0ac7c433b20920fe6444a8070758b7 182 Pfam PF13689 Domain of unknown function (DUF4154) 40 176 2.3E-34 T 14-10-2018 IPR025293 YfiR-like RY45_05320 536cfc84b68ed10dc7516bf39d7209a9 208 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 25 196 1.7E-31 T 14-10-2018 IPR003740 Uncharacterised membrane protein YitT RY45_01470 097f8d7eea6baa8b9cd795417682cd0f 344 Pfam PF04143 Sulphur transport 20 333 9.5E-41 T 14-10-2018 IPR007272 Sulphur transport domain RY45_15185 7eca3997f474dec208e4ae1144f327c8 560 Pfam PF00561 alpha/beta hydrolase fold 144 514 5.5E-19 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RY45_15185 7eca3997f474dec208e4ae1144f327c8 560 SUPERFAMILY SSF53474 111 527 4.02E-25 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold RY45_15600 8b1a8eba73413de9d7b3c379a861b2e5 158 SUPERFAMILY SSF56925 45 158 1.33E-6 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RY45_18360 202a0af9229a813dba115c82727b24a1 153 Pfam PF09523 Protein of unknown function (DUF2390) 22 117 1.6E-14 T 14-10-2018 IPR012659 Conserved hypothetical protein CHP02444 RY45_13595 c9e62043c355785f508aaf9aac407396 473 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 317 427 8.7E-23 T 14-10-2018 IPR025299 CstA, C-terminal domain RY45_13595 c9e62043c355785f508aaf9aac407396 473 Pfam PF02554 Carbon starvation protein CstA 151 278 7.2E-19 T 14-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 RY45_13595 c9e62043c355785f508aaf9aac407396 473 Pfam PF02554 Carbon starvation protein CstA 4 144 6.2E-33 T 14-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 RY45_00395 a935d0dc853abc4d015279d6903d4240 342 Gene3D G3DSA:2.60.40.3940 246 342 1.1E-6 T 14-10-2018 RY45_00395 a935d0dc853abc4d015279d6903d4240 342 Pfam PF12571 Phage tail-collar fibre protein 4 150 3.1E-60 T 14-10-2018 IPR022225 Phage tail fibre protein RY45_16590 0a3c33134008854c2e94b5d6ebd1b3ca 214 SUPERFAMILY SSF55729 8 154 1.91E-5 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase RY45_16590 0a3c33134008854c2e94b5d6ebd1b3ca 214 Pfam PF12261 Thermostable hemolysin 18 182 1.5E-59 T 14-10-2018 IPR022050 Thermostable hemolysin RY45_07305 082325ed43ff3468abcef16b4265f3c4 245 Pfam PF01618 MotA/TolQ/ExbB proton channel family 97 207 1.4E-22 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_09850 7f69c016e0393384371c2d3d485dbf31 94 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 20.753 T 14-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 RY45_09850 7f69c016e0393384371c2d3d485dbf31 94 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 86 2.3E-17 T 14-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 RY45_12095 e9854a838a10dcd29e7a5c0fdbb29689 506 Pfam PF13584 Oxygen tolerance 132 382 6.9E-24 T 14-10-2018 IPR025738 Aerotolerance-related protein BatD RY45_16200 171d8dc0e259878a26d58dab1efdd575 60 Pfam PF12065 Protein of unknown function (DUF3545) 1 58 2.3E-18 T 14-10-2018 IPR021932 Protein of unknown function DUF3545 RY45_13325 34b271c40aeaa7a6cb23a9aa03394489 111 Pfam PF12290 Protein of unknown function (DUF3802) 1 110 5.5E-47 T 14-10-2018 IPR020979 Uncharacterised protein family A0KLC6 RY45_06555 3d1e4587e73fef7b5ae7c12b40bb773b 254 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 17 233 9.2E-45 T 14-10-2018 RY45_06555 3d1e4587e73fef7b5ae7c12b40bb773b 254 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 11 251 28.717 T 14-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 RY45_22075 b5072e082651ecefcd46863bc9193252 253 PIRSF PIRSF028069 3 251 4.0E-70 T 14-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 RY45_22075 b5072e082651ecefcd46863bc9193252 253 Pfam PF11932 Protein of unknown function (DUF3450) 7 243 3.9E-68 T 14-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 RY45_19030 6bbe17f303eaa1072661636c2fc0ff90 153 Pfam PF05926 Phage head completion protein (GPL) 14 153 7.6E-36 T 14-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 RY45_19555 db0063672fef9ec8bcf7d095d777d8e9 229 Pfam PF04172 LrgB-like family 14 225 3.0E-70 T 14-10-2018 IPR007300 CidB/LrgB family RY45_11960 645ea7faf9a3878a5cea53cb2ed2f4ae 457 Pfam PF00860 Permease family 34 417 5.2E-80 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RY45_09175 4be8d3c9d838402bf5ab1fcaeee3dba4 160 Gene3D G3DSA:3.40.30.10 19 157 1.1E-25 T 14-10-2018 RY45_09175 4be8d3c9d838402bf5ab1fcaeee3dba4 160 Pfam PF08534 Redoxin 30 111 1.9E-9 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 RY45_09175 4be8d3c9d838402bf5ab1fcaeee3dba4 160 ProSitePatterns PS00194 Thioredoxin family active site. 51 69 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RY45_09175 4be8d3c9d838402bf5ab1fcaeee3dba4 160 SUPERFAMILY SSF52833 16 156 6.93E-26 T 14-10-2018 IPR036249 Thioredoxin-like superfamily RY45_12910 63a6dc8f3c559b34cec065eab06c63fb 120 Pfam PF11042 Protein of unknown function (DUF2750) 13 115 8.7E-35 T 14-10-2018 IPR021284 Protein of unknown function DUF2750 RY45_20070 2f0b95f27ba5d1b346aae2d89e6ce8a5 394 SUPERFAMILY SSF48452 43 139 2.53E-12 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_20070 2f0b95f27ba5d1b346aae2d89e6ce8a5 394 Pfam PF14559 Tetratricopeptide repeat 55 117 1.2E-9 T 14-10-2018 RY45_20070 2f0b95f27ba5d1b346aae2d89e6ce8a5 394 Gene3D G3DSA:1.25.40.10 11 158 8.9E-12 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_09205 af0e4d14588d5b9c8d5377f25dcfb0a8 300 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 140 281 8.0E-47 T 14-10-2018 IPR005642 Lysine exporter LysO RY45_09205 af0e4d14588d5b9c8d5377f25dcfb0a8 300 Pfam PF03956 Lysine exporter LysO 113 296 2.2E-54 T 14-10-2018 IPR005642 Lysine exporter LysO RY45_15645 f6331ce11a90f7022f32feec50ce25aa 130 Pfam PF04343 Protein of unknown function, DUF488 12 120 3.4E-15 T 14-10-2018 IPR007438 Protein of unknown function DUF488 RY45_00520 669cd71827fdf8fc2b7ca264c56454cb 134 SUPERFAMILY SSF88697 2 69 7.33E-11 T 14-10-2018 IPR015947 PUA-like superfamily RY45_00520 669cd71827fdf8fc2b7ca264c56454cb 134 Pfam PF12961 Domain of Unknown Function with PDB structure (DUF3850) 3 74 1.5E-22 T 14-10-2018 IPR039440 Domain of unknown function DUF3850 RY45_00520 669cd71827fdf8fc2b7ca264c56454cb 134 Gene3D G3DSA:2.30.130.30 1 76 1.3E-27 T 14-10-2018 RY45_15665 af483c4c5445ac0ab6d5e327887daef4 387 Pfam PF05762 VWA domain containing CoxE-like protein 184 272 4.7E-8 T 14-10-2018 IPR008912 Uncharacterised protein family CoxE-like RY45_03005 0621b5ebf8a3ea32a5f84c7a0d4f56b6 251 SUPERFAMILY SSF158855 53 243 6.28E-36 T 14-10-2018 RY45_03005 0621b5ebf8a3ea32a5f84c7a0d4f56b6 251 Pfam PF03280 Proteobacterial lipase chaperone protein 59 221 7.8E-16 T 14-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 RY45_00420 80db7c69238c61719dd20c75398650f8 189 Pfam PF05069 Phage virion morphogenesis family 104 182 4.4E-14 T 14-10-2018 IPR006522 Phage virion morphogensis protein RY45_00420 80db7c69238c61719dd20c75398650f8 189 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 107 184 1.2E-13 T 14-10-2018 IPR006522 Phage virion morphogensis protein RY45_19015 c376ac44bb1cfaaf35992c3bebbac5ff 297 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 5 130 2.1E-34 T 14-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 RY45_05135 c8ae3bf006773e876b8e1e4c05ab8a13 62 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 59 1.1E-18 T 14-10-2018 IPR019201 Protein of unknown function DUF2065 RY45_07715 ccfb6733d8f27b9d0198ddcd48a6f058 269 Pfam PF12684 PDDEXK-like domain of unknown function (DUF3799) 19 252 5.1E-27 T 14-10-2018 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain RY45_18005 549bdd8edf8d8d60ca356ce3a1ae6d4c 225 Gene3D G3DSA:1.10.8.1180 109 179 1.5E-17 T 14-10-2018 RY45_20460 19986147514734818b48ecd6d318b426 98 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 2 96 5.7E-43 T 14-10-2018 IPR020037 Protein of unknown function DUF4312 RY45_20460 19986147514734818b48ecd6d318b426 98 Pfam PF14189 Domain of unknown function (DUF4312) 5 87 1.6E-34 T 14-10-2018 IPR020037 Protein of unknown function DUF4312 RY45_05745 263e0ec3981c6060351408f7be14f757 297 Pfam PF01963 TraB family 26 285 9.7E-58 T 14-10-2018 IPR002816 Pheromone shutdown, TraB RY45_19085 0e030d041af2d198af246cf9679fdda8 107 Pfam PF10761 Protein of unknown function (DUF2590) 7 105 3.1E-40 T 14-10-2018 IPR019697 Bacteriophage HP1, Orf28 RY45_04190 dd51a35ea6b4087ce96f5ecbcc222591 216 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 11 210 4.5E-95 T 14-10-2018 IPR008517 Protein of unknown function DUF799 RY45_04190 dd51a35ea6b4087ce96f5ecbcc222591 216 Gene3D G3DSA:3.40.50.10610 23 190 1.8E-65 T 14-10-2018 RY45_17335 5692befdcb166608a691e355a421f151 97 Pfam PF07023 Protein of unknown function (DUF1315) 11 88 4.4E-26 T 14-10-2018 IPR009749 Protein of unknown function DUF1315 RY45_07350 9425694690dbfc6e59843424251244eb 68 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 56 2.8E-19 T 14-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 RY45_07350 9425694690dbfc6e59843424251244eb 68 Pfam PF04995 Heme exporter protein D (CcmD) 13 56 1.9E-17 T 14-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 RY45_22290 594e3e60fb362cf878c18193c2ade913 79 SUPERFAMILY SSF47598 1 42 9.18E-12 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RY45_22290 594e3e60fb362cf878c18193c2ade913 79 Pfam PF07878 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 8 42 3.1E-8 T 14-10-2018 IPR012869 CopG-like ribbon-helix-helix domain RY45_14440 07a42235273d5fcd57377a77020e66ef 312 Pfam PF09925 Predicted membrane protein (DUF2157) 11 152 9.9E-31 T 14-10-2018 IPR018677 Domain of unknown function DUF2157 RY45_19580 6d8f40a93bca14d4322bccca53f6e6b8 226 Pfam PF16537 Type II secretion system protein B 161 220 1.1E-20 T 14-10-2018 IPR032389 Type II secretion system protein B RY45_03240 0e49948cec3b5ce744ed392c93179a6b 158 Pfam PF05433 Glycine zipper 2TM domain 65 106 6.0E-6 T 14-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 RY45_10875 1150cc52cfabb8eac44ff6eb97edf4cc 259 Pfam PF01925 Sulfite exporter TauE/SafE 11 246 9.6E-44 T 14-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RY45_05895 1e17c6d4994a89dc7b38678b54a87523 260 Pfam PF07103 Protein of unknown function (DUF1365) 23 258 6.9E-71 T 14-10-2018 IPR010775 Protein of unknown function DUF1365 RY45_03800 d89e0150b1ba90303a76f21ffaea8235 109 Gene3D G3DSA:2.60.40.10 6 108 2.6E-12 T 14-10-2018 IPR013783 Immunoglobulin-like fold RY45_03800 d89e0150b1ba90303a76f21ffaea8235 109 SUPERFAMILY SSF81296 23 107 2.19E-11 T 14-10-2018 IPR014756 Immunoglobulin E-set RY45_02190 618c24be02d4c2e35b357357edc39c76 365 Pfam PF01699 Sodium/calcium exchanger protein 43 192 2.0E-17 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RY45_02190 618c24be02d4c2e35b357357edc39c76 365 Pfam PF01699 Sodium/calcium exchanger protein 221 361 1.3E-9 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RY45_00470 7f5c297e40de2666916d0d7716f8cff2 227 Pfam PF05944 Phage small terminase subunit 36 165 4.6E-44 T 14-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 RY45_10160 49a042dd07a6de5a17bd4d34b001afd4 92 Pfam PF08891 YfcL protein 5 88 2.1E-31 T 14-10-2018 IPR014987 Uncharacterised protein family YfcL RY45_18570 441ee6b94829fca3b8ef3e56b9dc746c 729 Gene3D G3DSA:3.20.20.80 179 721 1.4E-119 T 14-10-2018 RY45_18570 441ee6b94829fca3b8ef3e56b9dc746c 729 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 140 719 2.1E-184 T 14-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RY45_18570 441ee6b94829fca3b8ef3e56b9dc746c 729 SUPERFAMILY SSF51445 168 720 4.89E-145 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily RY45_18570 441ee6b94829fca3b8ef3e56b9dc746c 729 Pfam PF02446 4-alpha-glucanotransferase 185 701 1.2E-124 T 14-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RY45_03025 c74701ca07ed4133c1486f524399541d 312 Pfam PF02698 DUF218 domain 64 202 6.1E-21 T 14-10-2018 IPR003848 Domain of unknown function DUF218 RY45_05395 db2399bc0e60061e73e6eff3fc2be014 792 Gene3D G3DSA:2.60.120.1230 116 240 3.3E-46 T 14-10-2018 RY45_05395 db2399bc0e60061e73e6eff3fc2be014 792 Gene3D G3DSA:2.60.120.1230 552 662 1.5E-22 T 14-10-2018 RY45_05395 db2399bc0e60061e73e6eff3fc2be014 792 Pfam PF10462 Peptidase M66 238 538 2.9E-86 T 14-10-2018 IPR019503 Peptidase M66 domain GO:0004222 RY45_12740 e6c54c17f6d0689e568680cb57873009 251 Pfam PF01618 MotA/TolQ/ExbB proton channel family 105 214 2.1E-35 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_14000 a17534c9a112f75a3ff1a5362205d302 153 Pfam PF07321 Type III secretion protein YscO 2 149 2.3E-34 T 14-10-2018 IPR009929 Type III secretion sytem,YscO RY45_12515 785c0e713aef4906eb73f21f0f137fdb 253 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 21 246 4.2E-12 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RY45_12515 785c0e713aef4906eb73f21f0f137fdb 253 Gene3D G3DSA:3.40.190.10 18 241 1.2E-10 T 14-10-2018 RY45_12515 785c0e713aef4906eb73f21f0f137fdb 253 Gene3D G3DSA:3.40.190.10 106 207 1.2E-10 T 14-10-2018 RY45_12515 785c0e713aef4906eb73f21f0f137fdb 253 SUPERFAMILY SSF53850 15 246 2.36E-24 T 14-10-2018 RY45_20635 1377e251dc66352a519695a33fde9c25 354 Pfam PF11301 Protein of unknown function (DUF3103) 25 352 9.9E-138 T 14-10-2018 IPR021452 Protein of unknown function DUF3103 RY45_00895 52dc471571a1e5f459b866b7d8c4487c 99 SUPERFAMILY SSF143011 51 90 3.27E-6 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily RY45_11670 1510a604618a3fc95c96b0aa1acd491d 489 Pfam PF01384 Phosphate transporter family 30 477 1.4E-80 T 14-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RY45_00575 ce5b7546e1b91b414c6638fb8a12684e 54 Pfam PF13064 Protein of unknown function (DUF3927) 23 48 6.0E-6 T 14-10-2018 IPR025169 Protein of unknown function DUF3927 RY45_21590 a055d1c32f1538d0293e0531b29617fb 285 SUPERFAMILY SSF53850 8 241 5.31E-10 T 14-10-2018 RY45_07505 8836c8c2489958e3b26f954033f6ce96 179 SUPERFAMILY SSF52540 4 118 8.08E-14 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RY45_07505 8836c8c2489958e3b26f954033f6ce96 179 Gene3D G3DSA:3.40.50.300 2 146 6.3E-11 T 14-10-2018 RY45_11335 03314d0a24543609d3bc2c3b11450404 225 Pfam PF11205 Protein of unknown function (DUF2987) 22 168 2.5E-47 T 14-10-2018 IPR021370 Protein of unknown function DUF2987 RY45_14005 834fe7a5ce41c186b9bdc57d485f4642 371 TIGRFAM TIGR02514 type_III_yscP: type III secretion system needle length determinant 246 371 1.6E-48 T 14-10-2018 IPR013354 Type III secretion system needle length determinant, C-terminal domain GO:0009405 RY45_12080 543153bb16d2acd18a28b983e9321ade 191 Pfam PF14316 Domain of unknown function (DUF4381) 24 159 3.9E-9 T 14-10-2018 IPR025489 Protein of unknown function (DUF4381 RY45_02345 5e041e6da1e55922f5b685705bfa0c50 201 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 197 2.0E-29 T 14-10-2018 IPR018635 Uncharacterised protein family UPF0319 RY45_19055 cb3ebd8aa12d50802945767a5c818a3f 103 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 1 101 2.6E-35 T 14-10-2018 IPR006481 Bacteriophage lambda, GpS, holin RY45_19055 cb3ebd8aa12d50802945767a5c818a3f 103 Pfam PF05106 Phage holin family (Lysis protein S) 4 101 1.2E-28 T 14-10-2018 IPR006481 Bacteriophage lambda, GpS, holin RY45_01150 b888135913830105be9371baad8bd16e 418 Pfam PF03611 PTS system sugar-specific permease component 11 405 3.3E-144 T 14-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 RY45_11380 2e920e9129aea821f053f52ab341dd81 59 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 1 45 2.0E-11 T 14-10-2018 IPR008621 Cbb3-type cytochrome oxidase component RY45_14260 bcdcc3a2fce781cd13175bd2de9c24d2 331 Pfam PF14027 Protein of unknown function (DUF4243) 25 296 3.2E-16 T 14-10-2018 IPR025337 Questin oxidase-like GO:0016491 RY45_12520 01c7343d84e561239c98888ae8bdcaf9 966 Pfam PF05359 Domain of Unknown Function (DUF748) 153 307 2.8E-26 T 14-10-2018 IPR008023 Protein of unknown function DUF748 RY45_12520 01c7343d84e561239c98888ae8bdcaf9 966 Pfam PF05359 Domain of Unknown Function (DUF748) 368 522 1.7E-28 T 14-10-2018 IPR008023 Protein of unknown function DUF748 RY45_12520 01c7343d84e561239c98888ae8bdcaf9 966 Pfam PF05359 Domain of Unknown Function (DUF748) 579 724 1.0E-35 T 14-10-2018 IPR008023 Protein of unknown function DUF748 RY45_00300 54d48570e58bdd06f69551586f7a60fe 192 Gene3D G3DSA:2.60.40.3290 13 191 4.0E-67 T 14-10-2018 IPR038478 Fimbrillin subunit EcpA superfamily RY45_00300 54d48570e58bdd06f69551586f7a60fe 192 Pfam PF16449 Fimbrillin MatB 26 190 5.4E-86 T 14-10-2018 IPR016514 Fimbrial protein EcpA RY45_07330 6a5d1d2f8874fe13223d6933c5888c5f 128 Pfam PF10975 Protein of unknown function (DUF2802) 58 125 1.0E-25 T 14-10-2018 IPR021244 Protein of unknown function DUF2802 RY45_18110 7445ef5d23d82ae597f992e347eb9485 175 Pfam PF11157 Protein of unknown function (DUF2937) 6 165 1.1E-52 T 14-10-2018 IPR022584 Protein of unknown function DUF2937 RY45_02615 a29453561ac75699f7e3cdddcec52de1 345 Pfam PF01757 Acyltransferase family 5 327 4.3E-20 T 14-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RY45_02830 58aefe071a410f8da0fde2250b94e158 490 Pfam PF03577 Peptidase family C69 23 403 5.3E-90 T 14-10-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 RY45_02830 58aefe071a410f8da0fde2250b94e158 490 Gene3D G3DSA:3.60.60.10 24 260 4.5E-13 T 14-10-2018 RY45_15595 23ae3c54fbe4d01f75607512ebf8db4f 132 Gene3D G3DSA:2.40.128.270 17 128 3.7E-20 T 14-10-2018 IPR038670 HslJ-like superfamily RY45_15595 23ae3c54fbe4d01f75607512ebf8db4f 132 Pfam PF03724 META domain 27 125 1.2E-21 T 14-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ RY45_22275 e778dcb45693954811c2c1d42e833277 144 SUPERFAMILY SSF46785 42 114 1.21E-6 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RY45_22275 e778dcb45693954811c2c1d42e833277 144 Gene3D G3DSA:1.10.10.10 27 117 2.5E-6 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RY45_02655 3389d77854a06e03a5940fe5d39497d2 357 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 31 352 6.5E-96 T 14-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX RY45_00430 0d21c422a9bb4530af67fc2669e1a005 155 TIGRFAM TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family 10 149 4.2E-31 T 14-10-2018 IPR020000 Bacteriophage P2, LysB RY45_15095 2fee24a4c2851d78e7d35eb2a9266273 284 Hamap MF_01805 Segregation and condensation protein A [scpA]. 40 273 20.441 T 14-10-2018 IPR003768 Segregation and condensation protein A RY45_15095 2fee24a4c2851d78e7d35eb2a9266273 284 Pfam PF02616 Segregation and condensation protein ScpA 57 267 1.9E-26 T 14-10-2018 IPR003768 Segregation and condensation protein A RY45_18380 3d3a47fe68b01c4ae0d331cee9938b3a 122 Pfam PF09834 Predicted membrane protein (DUF2061) 1 51 1.1E-19 T 14-10-2018 IPR018638 Domain of unknown function DUF2061, membrane RY45_18380 3d3a47fe68b01c4ae0d331cee9938b3a 122 Pfam PF09834 Predicted membrane protein (DUF2061) 62 111 2.4E-20 T 14-10-2018 IPR018638 Domain of unknown function DUF2061, membrane RY45_07600 e4059335ef5bbde770e87b40afb279c1 118 Pfam PF04320 Protein with unknown function (DUF469) 12 113 4.7E-27 T 14-10-2018 IPR007416 Protein of unknown function DUF469 RY45_20850 374ec42eb29642df95af9530eca1432c 146 Pfam PF09980 Predicted membrane protein (DUF2214) 6 146 2.1E-38 T 14-10-2018 IPR018706 Protein of unknown function DUF2214, membrane RY45_13485 051b98df09237155d577b20e188827c3 473 SUPERFAMILY SSF48452 130 268 1.39E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RY45_14925 d0134325043d2f4eb67f115f347a9511 82 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 8 80 5.1E-20 T 14-10-2018 IPR013468 Conserved hypothetical protein CHP02647 RY45_21615 b615a55857e97c24490aa7b0d9393591 139 Pfam PF03724 META domain 26 129 4.3E-23 T 14-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ RY45_21615 b615a55857e97c24490aa7b0d9393591 139 Gene3D G3DSA:2.40.128.270 32 134 3.5E-26 T 14-10-2018 IPR038670 HslJ-like superfamily RY45_02130 5127356f1ca9371133953d212a67cfd3 103 Pfam PF06611 Protein of unknown function (DUF1145) 5 60 1.3E-17 T 14-10-2018 IPR009525 Protein of unknown function DUF1145 RY45_17425 e0c7d0f81b7bdce6f8c8f94204e855d2 137 Pfam PF10807 Protein of unknown function (DUF2541) 17 133 3.0E-9 T 14-10-2018 IPR020240 Uncharacterised protein family UPF0412, YaaI RY45_11720 0fbf107836a108efaef8a925b47fdf24 394 Pfam PF01757 Acyltransferase family 11 362 7.0E-25 T 14-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RY45_00915 44deab3d07d18625c346ca1d91d91396 134 Gene3D G3DSA:2.60.120.380 21 134 8.8E-36 T 14-10-2018 RY45_18865 e8791fd457b0419d5cacc75762cddc0d 202 Pfam PF10144 Bacterial virulence factor haemolysin 16 151 8.6E-17 T 14-10-2018 IPR019305 Uncharacterised protein family Smp RY45_19645 f3dc682de5f830d68fd5e826303d4cfc 367 Pfam PF08668 HDOD domain 173 291 1.0E-15 T 14-10-2018 IPR013976 Metal-dependent hydrolase HDOD RY45_19645 f3dc682de5f830d68fd5e826303d4cfc 367 Gene3D G3DSA:1.10.3210.10 165 325 8.7E-21 T 14-10-2018 RY45_19645 f3dc682de5f830d68fd5e826303d4cfc 367 SUPERFAMILY SSF109604 151 363 7.85E-30 T 14-10-2018 RY45_15915 014f78142f0eadedd07fe89e07ea72b9 147 Pfam PF07681 DoxX 24 105 6.5E-17 T 14-10-2018 IPR032808 DoxX family RY45_04790 56d8b71bd22a49393ac79afbcfdfb910 184 Pfam PF04186 FxsA cytoplasmic membrane protein 33 135 1.3E-33 T 14-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 RY45_01175 d62e770b148df6bad7d6752074e4db06 111 Pfam PF10973 Protein of unknown function (DUF2799) 27 108 3.2E-19 T 14-10-2018 IPR021242 Protein of unknown function DUF2799 RY45_14265 270b377ab0704e509ce397f76f2b18da 144 Gene3D G3DSA:2.60.40.2970 16 131 4.0E-28 T 14-10-2018 RY45_06090 a38adc0d77d1064fd9569d37da620f1d 190 Pfam PF03923 Uncharacterized lipoprotein 28 186 5.3E-42 T 14-10-2018 IPR005619 Uncharacterised protein family, YajG RY45_08340 95c8c9009c7d8b940689c8291baa0c89 73 Pfam PF10981 Protein of unknown function (DUF2788) 18 67 3.0E-19 T 14-10-2018 IPR021249 Protein of unknown function DUF2788 RY45_19020 3f2514d0f0cd4a11c0d0f7307d7a200e 359 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 15 328 5.9E-103 T 14-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid RY45_19020 3f2514d0f0cd4a11c0d0f7307d7a200e 359 Pfam PF05125 Phage major capsid protein, P2 family 13 334 5.5E-105 T 14-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid RY45_10645 de5d22028f40f53c555d8be3f00143bb 89 Pfam PF06803 Protein of unknown function (DUF1232) 32 68 1.1E-12 T 14-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 RY45_19550 7fd78a24fc2d3d074ae33fab223cce5f 133 Pfam PF03788 LrgA family 22 115 5.2E-26 T 14-10-2018 IPR005538 LrgA/CidA family GO:0016021 RY45_21805 c95d7f393197b903e4a7c640b1ac64fc 149 Pfam PF04982 HPP family 33 144 3.6E-30 T 14-10-2018 IPR007065 HPP RY45_19810 ee732c06aa74add8e3181b29a810b26d 701 Pfam PF05960 Bacterial protein of unknown function (DUF885) 61 692 8.2E-102 T 14-10-2018 IPR010281 Protein of unknown function DUF885 RY45_19120 a64b2017f7b3c55ab4ee197804d1ddf6 537 SUPERFAMILY SSF69255 250 342 1.28E-10 T 14-10-2018 RY45_09335 3d5418910c2c9f3c97177da449da7cf9 310 Pfam PF02535 ZIP Zinc transporter 159 305 1.1E-24 T 14-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 RY45_01180 caca493a6b6943537dd20590aaa53fa1 144 Pfam PF03748 Flagellar basal body-associated protein FliL 45 144 6.5E-19 T 14-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RY45_20300 0dce5ceb01433e37b6dce6fe5616af74 138 Pfam PF02050 Flagellar FliJ protein 12 131 1.2E-9 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RY45_22065 b1919aa2cebab0cdb8e9ca180ebad999 176 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 164 7.4E-21 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RY45_16995 e5f43ff991ff38a58ab0ccd4af9bfc6c 124 Pfam PF06476 Protein of unknown function (DUF1090) 4 108 4.5E-33 T 14-10-2018 IPR009468 Protein of unknown function DUF1090 RY45_04810 a858618a4992d56e471c3120ff5e6f65 165 SUPERFAMILY SSF56524 41 140 2.09E-15 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RY45_17900 9cccf2101156553b8014aee385e9e83e 110 Pfam PF04320 Protein with unknown function (DUF469) 6 106 1.1E-39 T 14-10-2018 IPR007416 Protein of unknown function DUF469 RY45_00370 c115d99cbe401564d36840e3569ce3b3 43 Pfam PF06528 Phage P2 GpE 1 28 1.8E-10 T 14-10-2018 IPR009493 Burkholderia phage phiE202, Gp27 RY45_02050 9bc2e396e55df385df2983b683569f46 208 Pfam PF07947 YhhN family 26 206 9.9E-51 T 14-10-2018 IPR012506 YhhN-like GO:0016021 RY45_19625 01db8b87deb2345c712b61c04d7b1e5c 548 Pfam PF02470 MlaD protein 44 135 1.1E-7 T 14-10-2018 IPR003399 Mce/MlaD RY45_19625 01db8b87deb2345c712b61c04d7b1e5c 548 Pfam PF02470 MlaD protein 289 392 3.7E-12 T 14-10-2018 IPR003399 Mce/MlaD