locus-tag class description V428_00005 PF11638 DnaA N-terminal domain V428_00005 PF08299 Bacterial dnaA protein helix-turn-helix V428_00005 PF00308 Bacterial dnaA protein V428_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain V428_00010 PF02767 DNA polymerase III beta subunit, central domain V428_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain V428_00015 PF02463 RecF/RecN/SMC N terminal domain V428_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00020 PF00204 DNA gyrase B V428_00020 PF00986 DNA gyrase B subunit, carboxyl terminus V428_00020 PF01751 Toprim domain V428_00020 PF18053 DNA gyrase B subunit insert domain V428_00030 PF13280 WYL domain V428_00030 PF08279 HTH domain V428_00035 PF00011 Hsp20/alpha crystallin family V428_00040 PF00011 Hsp20/alpha crystallin family V428_00045 PF00155 Aminotransferase class I and II V428_00060 PF07690 Major Facilitator Superfamily V428_00065 PF00072 Response regulator receiver domain V428_00065 PF00486 Transcriptional regulatory protein, C terminal V428_00070 PF13493 Domain of unknown function (DUF4118) V428_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain V428_00070 PF00512 His Kinase A (phospho-acceptor) domain V428_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00070 PF13492 GAF domain V428_00075 PF02669 K+-transporting ATPase, c chain V428_00090 PF03814 Potassium-transporting ATPase A subunit V428_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_00100 PF00512 His Kinase A (phospho-acceptor) domain V428_00100 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00105 PF00873 AcrB/AcrD/AcrF family V428_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_00115 PF00440 Bacterial regulatory proteins, tetR family V428_00145 PF00224 Pyruvate kinase, barrel domain V428_00145 PF02887 Pyruvate kinase, alpha/beta domain V428_00150 PF07690 Major Facilitator Superfamily V428_00160 PF00512 His Kinase A (phospho-acceptor) domain V428_00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00160 PF00672 HAMP domain V428_00165 PF02954 Bacterial regulatory protein, Fis family V428_00165 PF00072 Response regulator receiver domain V428_00165 PF14532 Sigma-54 interaction domain V428_00180 PF12146 Serine aminopeptidase, S33 V428_00185 PF00132 Bacterial transferase hexapeptide (six repeats) V428_00195 PF13291 ACT domain V428_00195 PF04607 Region found in RelA / SpoT proteins V428_00195 PF02824 TGS domain V428_00200 PF01192 RNA polymerase Rpb6 V428_00205 PF00625 Guanylate kinase V428_00210 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_00225 PF00892 EamA-like transporter family V428_00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_00245 PF03466 LysR substrate binding domain V428_00250 PF00579 tRNA synthetases class I (W and Y) V428_00255 PF00582 Universal stress protein family V428_00260 PF12241 Trans-2-enoyl-CoA reductase catalytic region V428_00260 PF07055 Enoyl reductase FAD binding domain V428_00260 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V428_00265 PF00990 Diguanylate cyclase, GGDEF domain V428_00270 PF00210 Ferritin-like domain V428_00280 PF08721 TnsA endonuclease C terminal V428_00280 PF08722 TnsA endonuclease N terminal V428_00295 PF11426 Tn7 transposition regulator TnsC V428_00295 PF13401 AAA domain V428_00300 PF07804 HipA-like C-terminal domain V428_00300 PF13657 HipA N-terminal domain V428_00305 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) V428_00305 PF18766 SWI2/SNF2 ATPase V428_00305 PF12008 Type I restriction and modification enzyme - subunit R C terminal V428_00315 PF17191 RecG wedge domain V428_00315 PF13749 Putative ATP-dependent DNA helicase recG C-terminal V428_00315 PF00270 DEAD/DEAH box helicase V428_00330 PF02384 N-6 DNA Methylase V428_00330 PF12161 HsdM N-terminal domain V428_00355 PF07690 Major Facilitator Superfamily V428_00360 PF01810 LysE type translocator V428_00375 PF15976 CS1-pili formation C-terminal V428_00375 PF16967 E-set like domain V428_00380 PF18649 EcpB C-terminal domain V428_00385 PF16449 Fimbrillin MatB V428_00390 PF00196 Bacterial regulatory proteins, luxR family V428_00390 PF00072 Response regulator receiver domain V428_00395 PF00989 PAS fold V428_00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00395 PF00512 His Kinase A (phospho-acceptor) domain V428_00395 PF01627 Hpt domain V428_00395 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_00395 PF00072 Response regulator receiver domain V428_00405 PF06580 Histidine kinase V428_00405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00405 PF07694 5TMR of 5TMR-LYT V428_00410 PF00072 Response regulator receiver domain V428_00410 PF04397 LytTr DNA-binding domain V428_00415 PF07690 Major Facilitator Superfamily V428_00420 PF02222 ATP-grasp domain V428_00420 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain V428_00425 PF00731 AIR carboxylase V428_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_00440 PF03466 LysR substrate binding domain V428_00445 PF00593 TonB dependent receptor V428_00445 PF07715 TonB-dependent Receptor Plug Domain V428_00450 PF01177 Asp/Glu/Hydantoin racemase V428_00490 PF07969 Amidohydrolase family V428_00495 PF02537 CrcB-like protein, Camphor Resistance (CrcB) V428_00500 PF01209 ubiE/COQ5 methyltransferase family V428_00505 PF02036 SCP-2 sterol transfer family V428_00510 PF03109 ABC1 family V428_00515 PF02416 mttA/Hcf106 family V428_00520 PF02416 mttA/Hcf106 family V428_00525 PF00902 Sec-independent protein translocase protein (TatC) V428_00530 PF01026 TatD related DNase V428_00535 PF00490 Delta-aminolevulinic acid dehydratase V428_00540 PF01432 Peptidase family M3 V428_00545 PF00990 Diguanylate cyclase, GGDEF domain V428_00545 PF00563 EAL domain V428_00545 PF03707 Bacterial signalling protein N terminal repeat V428_00550 PF04445 Putative SAM-dependent methyltransferase V428_00565 PF02541 Ppx/GppA phosphatase family V428_00570 PF00270 DEAD/DEAH box helicase V428_00570 PF00271 Helicase conserved C-terminal domain V428_00575 PF00085 Thioredoxin V428_00580 PF07497 Rho termination factor, RNA-binding domain V428_00580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_00580 PF07498 Rho termination factor, N-terminal domain V428_00590 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase V428_00595 PF00175 Oxidoreductase NAD-binding domain V428_00600 PF04380 Membrane fusogenic activity V428_00605 PF12262 Bacterial virulence factor lipase N-terminal V428_00610 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease V428_00610 PF01694 Rhomboid family V428_00615 PF00581 Rhodanese-like domain V428_00630 PF00005 ABC transporter V428_00635 PF12399 Branched-chain amino acid ATP-binding cassette transporter V428_00635 PF00005 ABC transporter V428_00640 PF11862 Domain of unknown function (DUF3382) V428_00640 PF02653 Branched-chain amino acid transport system / permease component V428_00645 PF02653 Branched-chain amino acid transport system / permease component V428_00650 PF13458 Periplasmic binding protein V428_00655 PF00356 Bacterial regulatory proteins, lacI family V428_00660 PF02056 Family 4 glycosyl hydrolase V428_00660 PF11975 Family 4 glycosyl hydrolase C-terminal domain V428_00665 PF00367 phosphotransferase system, EIIB V428_00665 PF02378 Phosphotransferase system, EIIC V428_00670 PF07702 UTRA domain V428_00670 PF00392 Bacterial regulatory proteins, gntR family V428_00675 PF01590 GAF domain V428_00675 PF00158 Sigma-54 interaction domain V428_00680 PF00258 Flavodoxin V428_00680 PF00753 Metallo-beta-lactamase superfamily V428_00680 PF00301 Rubredoxin V428_00685 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_00685 PF18113 Rubredoxin binding C-terminal domain V428_00695 PF12801 4Fe-4S binding domain V428_00700 PF03222 Tryptophan/tyrosine permease family V428_00720 PF01747 ATP-sulfurylase V428_00720 PF14306 PUA-like domain V428_00735 PF05746 DALR anticodon binding domain V428_00735 PF02092 Glycyl-tRNA synthetase beta subunit V428_00740 PF02091 Glycyl-tRNA synthetase alpha subunit V428_00745 PF03352 Methyladenine glycosylase V428_00750 PF00857 Isochorismatase family V428_00755 PF00691 OmpA family V428_00755 PF13488 Glycine zipper V428_00760 PF01042 Endoribonuclease L-PSP V428_00765 PF01206 Sulfurtransferase TusA V428_00775 PF01547 Bacterial extracellular solute-binding protein V428_00780 PF00512 His Kinase A (phospho-acceptor) domain V428_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00780 PF00672 HAMP domain V428_00785 PF00072 Response regulator receiver domain V428_00785 PF00486 Transcriptional regulatory protein, C terminal V428_00790 PF02803 Thiolase, C-terminal domain V428_00790 PF00108 Thiolase, N-terminal domain V428_00795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V428_00795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V428_00795 PF00378 Enoyl-CoA hydratase/isomerase V428_00800 PF13193 AMP-binding enzyme C-terminal domain V428_00800 PF00501 AMP-binding enzyme V428_00805 PF00557 Metallopeptidase family M24 V428_00810 PF09186 Domain of unknown function (DUF1949) V428_00810 PF01205 Uncharacterized protein family UPF0029 V428_00815 PF02386 Cation transport protein V428_00820 PF12724 Flavodoxin domain V428_00845 PF00583 Acetyltransferase (GNAT) family V428_00845 PF13380 CoA binding domain V428_00845 PF13607 Succinyl-CoA ligase like flavodoxin domain V428_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_00860 PF03466 LysR substrate binding domain V428_00865 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain V428_00865 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain V428_00870 PF00342 Phosphoglucose isomerase V428_00880 PF00924 Mechanosensitive ion channel V428_00880 PF05552 Conserved TM helix V428_00885 PF00440 Bacterial regulatory proteins, tetR family V428_00890 PF00692 dUTPase V428_00895 PF02441 Flavoprotein V428_00895 PF04127 DNA / pantothenate metabolism flavoprotein V428_00900 PF04002 RadC-like JAB domain V428_00905 PF00830 Ribosomal L28 family V428_00910 PF00471 Ribosomal protein L33 V428_00920 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain V428_00920 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain V428_00920 PF06827 Zinc finger found in FPG and IleRS V428_00925 PF04393 Protein of unknown function (DUF535) V428_00930 PF01467 Cytidylyltransferase-like V428_00935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_00940 PF00535 Glycosyl transferase family 2 V428_00945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_00950 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) V428_00955 PF03611 PTS system sugar-specific permease component V428_00965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_00970 PF00356 Bacterial regulatory proteins, lacI family V428_00970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_00975 PF08240 Alcohol dehydrogenase GroES-like domain V428_00975 PF00107 Zinc-binding dehydrogenase V428_00995 PF03748 Flagellar basal body-associated protein FliL V428_01000 PF04345 Chorismate lyase V428_01005 PF01040 UbiA prenyltransferase family V428_01010 PF01553 Acyltransferase V428_01015 PF00717 Peptidase S24-like V428_01015 PF01726 LexA DNA binding domain V428_01025 PF02630 SCO1/SenC V428_01030 PF01554 MatE V428_01035 PF00588 SpoU rRNA Methylase family V428_01040 PF16527 Two-component sensor protein CpxA, periplasmic domain V428_01040 PF00512 His Kinase A (phospho-acceptor) domain V428_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_01040 PF00672 HAMP domain V428_01045 PF00072 Response regulator receiver domain V428_01045 PF00486 Transcriptional regulatory protein, C terminal V428_01050 PF16916 Dimerisation domain of Zinc Transporter V428_01050 PF01545 Cation efflux family V428_01055 PF00132 Bacterial transferase hexapeptide (six repeats) V428_01055 PF06426 Serine acetyltransferase, N-terminal V428_01065 PF06005 Cell division protein ZapB V428_01075 PF01612 3'-5' exonuclease V428_01075 PF01367 5'-3' exonuclease, C-terminal SAM fold V428_01075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V428_01075 PF00476 DNA polymerase family A V428_01080 PF00132 Bacterial transferase hexapeptide (six repeats) V428_01120 PF00356 Bacterial regulatory proteins, lacI family V428_01125 PF02929 Beta galactosidase small chain V428_01125 PF16353 Domain of unknown function(DUF4981) V428_01125 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V428_01125 PF00703 Glycosyl hydrolases family 2 V428_01125 PF02837 Glycosyl hydrolases family 2, sugar binding domain V428_01130 PF04074 YhcH/YjgK/YiaL V428_01135 PF13520 Amino acid permease V428_01140 PF01588 Putative tRNA binding domain V428_01145 PF13520 Amino acid permease V428_01150 PF13593 SBF-like CPA transporter family (DUF4137) V428_01155 PF03781 Sulfatase-modifying factor enzyme 1 V428_01155 PF12867 DinB superfamily V428_01165 PF00756 Putative esterase V428_01170 PF08240 Alcohol dehydrogenase GroES-like domain V428_01170 PF00107 Zinc-binding dehydrogenase V428_01175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01175 PF03466 LysR substrate binding domain V428_01205 PF00580 UvrD/REP helicase N-terminal domain V428_01205 PF13361 UvrD-like helicase C-terminal domain V428_01220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01220 PF03466 LysR substrate binding domain V428_01230 PF14001 YdfZ protein V428_01255 PF06206 CpeT/CpcT family (DUF1001) V428_01265 PF01810 LysE type translocator V428_01270 PF04143 Sulphur transport V428_01275 PF00690 Cation transporter/ATPase, N-terminus V428_01275 PF00689 Cation transporting ATPase, C-terminus V428_01280 PF01810 LysE type translocator V428_01285 PF12833 Helix-turn-helix domain V428_01290 PF00892 EamA-like transporter family V428_01300 PF00171 Aldehyde dehydrogenase family V428_01305 PF01381 Helix-turn-helix V428_01305 PF07883 Cupin domain V428_01310 PF00202 Aminotransferase class-III V428_01320 PF00117 Glutamine amidotransferase class-I V428_01320 PF00958 GMP synthase C terminal domain V428_01320 PF02540 NAD synthase V428_01325 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V428_01325 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V428_01330 PF00294 pfkB family carbohydrate kinase V428_01335 PF02082 Transcriptional regulator V428_01355 PF02386 Cation transport protein V428_01360 PF02254 TrkA-N domain V428_01360 PF02080 TrkA-C domain V428_01365 PF01029 NusB family V428_01365 PF01189 16S rRNA methyltransferase RsmB/F V428_01370 PF00551 Formyl transferase V428_01370 PF02911 Formyl transferase, C-terminal domain V428_01375 PF01327 Polypeptide deformylase V428_01385 PF02481 DNA recombination-mediator protein A V428_01385 PF17782 DprA winged helix domain V428_01390 PF04361 Protein of unknown function (DUF494) V428_01395 PF01396 Topoisomerase DNA binding C4 zinc finger V428_01400 PF00731 AIR carboxylase V428_01405 PF01300 Telomere recombination V428_01410 PF01218 Coproporphyrinogen III oxidase V428_01415 PF18317 Shikimate 5'-dehydrogenase C-terminal domain V428_01415 PF08501 Shikimate dehydrogenase substrate binding domain V428_01415 PF01488 Shikimate / quinate 5-dehydrogenase V428_01420 PF07369 Protein of unknown function (DUF1488) V428_01425 PF01926 50S ribosome-binding GTPase V428_01430 PF00034 Cytochrome c V428_01440 PF04220 Der GTPase activator (YihI) V428_01445 PF10675 Protein of unknown function (DUF2489) V428_01450 PF06969 HemN C-terminal domain V428_01450 PF04055 Radical SAM superfamily V428_01455 PF00962 Adenosine/AMP deaminase V428_01460 PF00158 Sigma-54 interaction domain V428_01460 PF02954 Bacterial regulatory protein, Fis family V428_01460 PF00072 Response regulator receiver domain V428_01465 PF00989 PAS fold V428_01465 PF00512 His Kinase A (phospho-acceptor) domain V428_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_01475 PF00120 Glutamine synthetase, catalytic domain V428_01475 PF03951 Glutamine synthetase, beta-Grasp domain V428_01485 PF03631 Virulence factor BrkB V428_01490 PF02580 D-Tyr-tRNA(Tyr) deacylase V428_01500 PF09500 Putative thioesterase (yiiD_Cterm) V428_01500 PF00583 Acetyltransferase (GNAT) family V428_01510 PF00271 Helicase conserved C-terminal domain V428_01510 PF00270 DEAD/DEAH box helicase V428_01510 PF17191 RecG wedge domain V428_01515 PF13091 PLD-like domain V428_01520 PF02447 GntP family permease V428_01525 PF01202 Shikimate kinase V428_01530 PF00920 Dehydratase family V428_01535 PF01081 KDPG and KHG aldolase V428_01540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_01540 PF00356 Bacterial regulatory proteins, lacI family V428_01550 PF01551 Peptidase family M23 V428_01555 PF06415 BPG-independent PGAM N-terminus (iPGM_N) V428_01555 PF01676 Metalloenzyme superfamily V428_01560 PF00581 Rhodanese-like domain V428_01565 PF02556 Preprotein translocase subunit SecB V428_01570 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus V428_01570 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus V428_01575 PF01521 Iron-sulphur cluster biosynthesis V428_01575 PF01106 NifU-like domain V428_01580 PF00156 Phosphoribosyl transferase domain V428_01585 PF00561 alpha/beta hydrolase fold V428_01605 PF00575 S1 RNA binding domain V428_01605 PF17674 HHH domain V428_01605 PF09371 Tex-like protein N-terminal domain V428_01605 PF16921 Tex protein YqgF-like domain V428_01610 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_01610 PF03449 Transcription elongation factor, N-terminal V428_01615 PF00486 Transcriptional regulatory protein, C terminal V428_01615 PF00072 Response regulator receiver domain V428_01620 PF00672 HAMP domain V428_01620 PF00512 His Kinase A (phospho-acceptor) domain V428_01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_01630 PF00338 Ribosomal protein S10p/S20e V428_01635 PF00297 Ribosomal protein L3 V428_01640 PF00573 Ribosomal protein L4/L1 family V428_01645 PF00276 Ribosomal protein L23 V428_01650 PF00181 Ribosomal Proteins L2, RNA binding domain V428_01650 PF03947 Ribosomal Proteins L2, C-terminal domain V428_01655 PF00203 Ribosomal protein S19 V428_01660 PF00237 Ribosomal protein L22p/L17e V428_01665 PF07650 KH domain V428_01665 PF00189 Ribosomal protein S3, C-terminal domain V428_01670 PF00252 Ribosomal protein L16p/L10e V428_01675 PF00831 Ribosomal L29 protein V428_01680 PF00366 Ribosomal protein S17 V428_01685 PF00238 Ribosomal protein L14p/L23e V428_01690 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 V428_01690 PF00467 KOW motif V428_01695 PF00281 Ribosomal protein L5 V428_01695 PF00673 ribosomal L5P family C-terminus V428_01700 PF00253 Ribosomal protein S14p/S29e V428_01705 PF00410 Ribosomal protein S8 V428_01710 PF00347 Ribosomal protein L6 V428_01715 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast V428_01720 PF03719 Ribosomal protein S5, C-terminal domain V428_01720 PF00333 Ribosomal protein S5, N-terminal domain V428_01725 PF00327 Ribosomal protein L30p/L7e V428_01730 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A V428_01735 PF00344 SecY translocase V428_01740 PF00416 Ribosomal protein S13/S18 V428_01745 PF00411 Ribosomal protein S11 V428_01750 PF01479 S4 domain V428_01750 PF00163 Ribosomal protein S4/S9 N-terminal domain V428_01755 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain V428_01755 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain V428_01755 PF01000 RNA polymerase Rpb3/RpoA insert domain V428_01760 PF01196 Ribosomal protein L17 V428_01810 PF00999 Sodium/hydrogen exchanger family V428_01810 PF02254 TrkA-N domain V428_01815 PF02525 Flavodoxin-like fold V428_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01820 PF03466 LysR substrate binding domain V428_01825 PF00106 short chain dehydrogenase V428_01840 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_01840 PF00326 Prolyl oligopeptidase family V428_01865 PF07947 YhhN family V428_01870 PF07690 Major Facilitator Superfamily V428_01875 PF13533 Biotin-lipoyl like V428_01880 PF03466 LysR substrate binding domain V428_01880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01890 PF00375 Sodium:dicarboxylate symporter family V428_01895 PF10678 Protein of unknown function (DUF2492) V428_01900 PF01914 MarC family integral membrane protein V428_01905 PF03466 LysR substrate binding domain V428_01905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01910 PF02416 mttA/Hcf106 family V428_01925 PF01464 Transglycosylase SLT domain V428_01935 PF13091 PLD-like domain V428_01945 PF00440 Bacterial regulatory proteins, tetR family V428_01965 PF00448 SRP54-type protein, GTPase domain V428_01965 PF02881 SRP54-type protein, helical bundle domain V428_01970 PF00005 ABC transporter V428_01975 PF18075 FtsX extracellular domain V428_01980 PF04542 Sigma-70 region 2 V428_01980 PF00140 Sigma-70 factor, region 1.2 V428_01980 PF04545 Sigma-70, region 4 V428_01985 PF00484 Carbonic anhydrase V428_01990 PF07702 UTRA domain V428_01990 PF00392 Bacterial regulatory proteins, gntR family V428_01995 PF01979 Amidohydrolase family V428_02000 PF00491 Arginase family V428_02005 PF17391 Urocanase N-terminal domain V428_02005 PF01175 Urocanase Rossmann-like domain V428_02005 PF17392 Urocanase C-terminal domain V428_02010 PF00221 Aromatic amino acid lyase V428_02015 PF01699 Sodium/calcium exchanger protein V428_02020 PF12792 CSS motif domain associated with EAL V428_02020 PF00563 EAL domain V428_02025 PF00990 Diguanylate cyclase, GGDEF domain V428_02025 PF17157 Gammaproteobacterial periplasmic sensor domain V428_02025 PF00563 EAL domain V428_02055 PF00263 Bacterial type II and III secretion system protein V428_02055 PF03958 Bacterial type II/III secretion system short domain V428_02060 PF09077 Mu B transposition protein, C terminal V428_02060 PF13401 AAA domain V428_02070 PF00437 Type II/IV secretion system protein V428_02070 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V428_02075 PF00482 Type II secretion system (T2SS), protein F V428_02090 PF07963 Prokaryotic N-terminal methylation motif V428_02090 PF00114 Pilin (bacterial filament) V428_02095 PF07963 Prokaryotic N-terminal methylation motif V428_02095 PF14245 Type IV pilin PilA V428_02125 PF04085 rod shape-determining protein MreC V428_02130 PF04093 rod shape-determining protein MreD V428_02135 PF02545 Maf-like protein V428_02140 PF00575 S1 RNA binding domain V428_02140 PF10150 Ribonuclease E/G family V428_02145 PF13116 Protein of unknown function V428_02145 PF13502 AsmA-like C-terminal region V428_02155 PF00795 Carbon-nitrogen hydrolase V428_02160 PF01523 Putative modulator of DNA gyrase V428_02165 PF01380 SIS domain V428_02165 PF01418 Helix-turn-helix domain, rpiR family V428_02180 PF02378 Phosphotransferase system, EIIC V428_02180 PF00367 phosphotransferase system, EIIB V428_02185 PF13580 SIS domain V428_02195 PF01914 MarC family integral membrane protein V428_02200 PF07690 Major Facilitator Superfamily V428_02210 PF00072 Response regulator receiver domain V428_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_02215 PF00512 His Kinase A (phospho-acceptor) domain V428_02215 PF01627 Hpt domain V428_02215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V428_02215 PF00072 Response regulator receiver domain V428_02215 PF00672 HAMP domain V428_02220 PF13581 Histidine kinase-like ATPase domain V428_02225 PF08678 Rsbr N terminal V428_02225 PF01740 STAS domain V428_02230 PF13426 PAS domain V428_02230 PF08447 PAS fold V428_02230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_02245 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) V428_02250 PF04228 Putative neutral zinc metallopeptidase V428_02260 PF08668 HDOD domain V428_02290 PF00419 Fimbrial protein V428_02310 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V428_02310 PF02753 Pili assembly chaperone PapD, C-terminal domain V428_02315 PF13954 PapC N-terminal domain V428_02315 PF00577 Outer membrane usher protein V428_02315 PF13953 PapC C-terminal domain V428_02320 PF00691 OmpA family V428_02320 PF01389 OmpA-like transmembrane domain V428_02325 PF00419 Fimbrial protein V428_02330 PF04320 Protein with unknown function (DUF469) V428_02365 PF00999 Sodium/hydrogen exchanger family V428_02370 PF02965 Vitamin B12 dependent methionine synthase, activation domain V428_02370 PF02310 B12 binding domain V428_02370 PF02607 B12 binding domain V428_02370 PF00809 Pterin binding enzyme V428_02370 PF02574 Homocysteine S-methyltransferase V428_02375 PF18030 RimK PreATP-grasp domain V428_02375 PF08443 RimK-like ATP-grasp domain V428_02380 PF05525 Branched-chain amino acid transport protein V428_02390 PF00486 Transcriptional regulatory protein, C terminal V428_02390 PF00072 Response regulator receiver domain V428_02405 PF01117 Aerolysin toxin V428_02405 PF03440 Aerolysin/Pertussis toxin (APT) domain V428_02410 PF01964 Radical SAM ThiC family V428_02410 PF13667 ThiC-associated domain V428_02415 PF02581 Thiamine monophosphate synthase V428_02420 PF00899 ThiF family V428_02430 PF05690 Thiazole biosynthesis protein ThiG V428_02435 PF04055 Radical SAM superfamily V428_02435 PF06968 Biotin and Thiamin Synthesis associated domain V428_02450 PF13036 Peptidoglycan-synthase activator LpoB V428_02465 PF00990 Diguanylate cyclase, GGDEF domain V428_02465 PF17151 Periplasmic sensor domain V428_02475 PF06055 Exopolysaccharide synthesis, ExoD V428_02490 PF08803 Putative mono-oxygenase ydhR V428_02495 PF01638 HxlR-like helix-turn-helix V428_02520 PF07715 TonB-dependent Receptor Plug Domain V428_02520 PF00593 TonB dependent receptor V428_02535 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded V428_02540 PF03692 Putative zinc- or iron-chelating domain V428_02550 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase V428_02555 PF02602 Uroporphyrinogen-III synthase HemD V428_02560 PF03900 Porphobilinogen deaminase, C-terminal domain V428_02560 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain V428_02565 PF01295 Adenylate cyclase, class-I V428_02565 PF12633 Adenylate cyclase NT domain V428_02570 PF02230 Phospholipase/Carboxylesterase V428_02575 PF01491 Frataxin-like domain V428_02580 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V428_02580 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_02585 PF01678 Diaminopimelate epimerase V428_02595 PF02899 Phage integrase, N-terminal SAM-like domain V428_02595 PF00589 Phage integrase family V428_02600 PF13419 Haloacid dehalogenase-like hydrolase V428_02610 PF13545 Crp-like helix-turn-helix domain V428_02610 PF00027 Cyclic nucleotide-binding domain V428_02620 PF07722 Peptidase C26 V428_02640 PF00005 ABC transporter V428_02655 PF02464 Competence-damaged protein V428_02655 PF00994 Probable molybdopterin binding domain V428_02660 PF12072 Domain of unknown function (DUF3552) V428_02660 PF01966 HD domain V428_02660 PF00013 KH domain V428_02665 PF04204 Homoserine O-succinyltransferase V428_02675 PF01037 Lrp/AsnC ligand binding domain V428_02680 PF00884 Sulfatase V428_02695 PF16657 Maltogenic Amylase, C-terminal domain V428_02695 PF00128 Alpha amylase, catalytic domain V428_02695 PF02903 Alpha amylase, N-terminal ig-like domain V428_02700 PF02308 MgtC family V428_02720 PF00106 short chain dehydrogenase V428_02725 PF03577 Peptidase family C69 V428_02740 PF00465 Iron-containing alcohol dehydrogenase V428_02750 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_02760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_02760 PF12793 Sugar transport-related sRNA regulator N-term V428_02775 PF03280 Proteobacterial lipase chaperone protein V428_02780 PF00561 alpha/beta hydrolase fold V428_02790 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V428_02790 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V428_02795 PF02698 DUF218 domain V428_02800 PF01752 Collagenase V428_02800 PF08453 Peptidase family M9 N-terminal V428_02810 PF00419 Fimbrial protein V428_02820 PF00577 Outer membrane usher protein V428_02820 PF13953 PapC C-terminal domain V428_02820 PF13954 PapC N-terminal domain V428_02825 PF02753 Pili assembly chaperone PapD, C-terminal domain V428_02825 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V428_02830 PF00419 Fimbrial protein V428_02835 PF00419 Fimbrial protein V428_02845 PF00501 AMP-binding enzyme V428_02850 PF13378 Enolase C-terminal domain-like V428_02855 PF00378 Enoyl-CoA hydratase/isomerase V428_02860 PF12697 Alpha/beta hydrolase family V428_02865 PF16582 Middle domain of thiamine pyrophosphate V428_02865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_02865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_02870 PF00425 chorismate binding enzyme V428_02875 PF01040 UbiA prenyltransferase family V428_02900 PF00271 Helicase conserved C-terminal domain V428_02900 PF00270 DEAD/DEAH box helicase V428_02900 PF03880 DbpA RNA binding domain V428_02905 PF01773 Na+ dependent nucleoside transporter N-terminus V428_02905 PF07662 Na+ dependent nucleoside transporter C-terminus V428_02905 PF07670 Nucleoside recognition V428_02910 PF04307 LexA-binding, inner membrane-associated putative hydrolase V428_02925 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 V428_02930 PF01544 CorA-like Mg2+ transporter protein V428_02950 PF03471 Transporter associated domain V428_02950 PF02080 TrkA-C domain V428_02950 PF00999 Sodium/hydrogen exchanger family V428_02955 PF05068 Mannitol repressor V428_02960 PF08125 Mannitol dehydrogenase C-terminal domain V428_02960 PF01232 Mannitol dehydrogenase Rossmann domain V428_02965 PF02378 Phosphotransferase system, EIIC V428_02965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_02965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_02980 PF00440 Bacterial regulatory proteins, tetR family V428_02985 PF00773 RNB domain V428_02985 PF17876 Cold shock domain V428_02985 PF08206 Ribonuclease B OB domain V428_02990 PF03466 LysR substrate binding domain V428_02990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_02995 PF00765 Autoinducer synthase V428_03000 PF00196 Bacterial regulatory proteins, luxR family V428_03000 PF03472 Autoinducer binding domain V428_03005 PF01810 LysE type translocator V428_03010 PF02872 5'-nucleotidase, C-terminal domain V428_03010 PF00149 Calcineurin-like phosphoesterase V428_03015 PF05433 Glycine zipper 2TM domain V428_03020 PF00583 Acetyltransferase (GNAT) family V428_03025 PF11756 Nitrous oxide-stimulated promoter V428_03030 PF01321 Creatinase/Prolidase N-terminal domain V428_03030 PF00557 Metallopeptidase family M24 V428_03035 PF00392 Bacterial regulatory proteins, gntR family V428_03045 PF01430 Hsp33 protein V428_03050 PF01479 S4 domain V428_03055 PF11356 Type II secretion system protein C V428_03060 PF00263 Bacterial type II and III secretion system protein V428_03060 PF03958 Bacterial type II/III secretion system short domain V428_03065 PF00437 Type II/IV secretion system protein V428_03070 PF00482 Type II secretion system (T2SS), protein F V428_03075 PF07963 Prokaryotic N-terminal methylation motif V428_03075 PF08334 Type II secretion system (T2SS), protein G V428_03085 PF12019 Type II transport protein GspH V428_03085 PF07963 Prokaryotic N-terminal methylation motif V428_03090 PF02501 Type II secretion system (T2SS), protein I V428_03090 PF07963 Prokaryotic N-terminal methylation motif V428_03095 PF07963 Prokaryotic N-terminal methylation motif V428_03095 PF11612 Type II secretion system (T2SS), protein J V428_03100 PF03934 Type II secretion system (T2SS), protein K V428_03105 PF05134 Type II secretion system (T2SS), protein L V428_03105 PF12693 GspL periplasmic domain V428_03110 PF04612 Type II secretion system (T2SS), protein M V428_03115 PF01203 Type II secretion system (T2SS), protein N V428_03120 PF00196 Bacterial regulatory proteins, luxR family V428_03125 PF00579 tRNA synthetases class I (W and Y) V428_03125 PF01479 S4 domain V428_03130 PF13419 Haloacid dehalogenase-like hydrolase V428_03135 PF00293 NUDIX domain V428_03140 PF00459 Inositol monophosphatase family V428_03145 PF03222 Tryptophan/tyrosine permease family V428_03150 PF01588 Putative tRNA binding domain V428_03155 PF06445 GyrI-like small molecule binding domain V428_03155 PF12833 Helix-turn-helix domain V428_03160 PF01340 Met Apo-repressor, MetJ V428_03165 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_03170 PF00696 Amino acid kinase family V428_03170 PF00742 Homoserine dehydrogenase V428_03170 PF03447 Homoserine dehydrogenase, NAD binding domain V428_03180 PF00311 Phosphoenolpyruvate carboxylase V428_03185 PF01546 Peptidase family M20/M25/M40 V428_03185 PF07687 Peptidase dimerisation domain V428_03190 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_03190 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_03195 PF00696 Amino acid kinase family V428_03200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_03200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_03205 PF00764 Arginosuccinate synthase V428_03210 PF14698 Argininosuccinate lyase C-terminal V428_03210 PF00206 Lyase V428_03235 PF12464 Maltose acetyltransferase V428_03235 PF14602 Hexapeptide repeat of succinyl-transferase V428_03240 PF13194 Domain of unknown function (DUF4010) V428_03255 PF00528 Binding-protein-dependent transport system inner membrane component V428_03260 PF00528 Binding-protein-dependent transport system inner membrane component V428_03265 PF00005 ABC transporter V428_03265 PF12857 TOBE-like domain V428_03275 PF03466 LysR substrate binding domain V428_03275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03280 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V428_03280 PF18416 N-acetylglucosamine binding protein domain 2 V428_03285 PF12729 Four helix bundle sensory module for signal transduction V428_03285 PF00672 HAMP domain V428_03285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_03315 PF14685 Tricorn protease PDZ domain V428_03315 PF14684 Tricorn protease C1 domain V428_03315 PF03572 Peptidase family S41 V428_03315 PF07676 WD40-like Beta Propeller Repeat V428_03335 PF11230 Protein of unknown function (DUF3029) V428_03340 PF04055 Radical SAM superfamily V428_03350 PF03466 LysR substrate binding domain V428_03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03355 PF00155 Aminotransferase class I and II V428_03360 PF02583 Metal-sensitive transcriptional repressor V428_03375 PF18494 Pullulanase Ins domain V428_03375 PF11852 Domain of unknown function (DUF3372) V428_03375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_03375 PF17967 Pullulanase N2 domain V428_03375 PF03714 Bacterial pullanase-associated domain V428_03380 PF00403 Heavy-metal-associated domain V428_03385 PF08534 Redoxin V428_03395 PF00271 Helicase conserved C-terminal domain V428_03395 PF00270 DEAD/DEAH box helicase V428_03410 PF03372 Endonuclease/Exonuclease/phosphatase family V428_03415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_03415 PF08447 PAS fold V428_03430 PF06062 Uncharacterised protein family (UPF0231) V428_03440 PF13556 PucR C-terminal helix-turn-helix domain V428_03440 PF17853 GGDEF-like domain V428_03440 PF05651 Putative sugar diacid recognition V428_03445 PF02447 GntP family permease V428_03450 PF02595 Glycerate kinase family V428_03460 PF00255 Glutathione peroxidase V428_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03465 PF03466 LysR substrate binding domain V428_03470 PF07670 Nucleoside recognition V428_03470 PF07662 Na+ dependent nucleoside transporter C-terminus V428_03470 PF01773 Na+ dependent nucleoside transporter N-terminus V428_03475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V428_03475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_03480 PF00472 RF-1 domain V428_03485 PF00543 Nitrogen regulatory protein P-II V428_03490 PF13416 Bacterial extracellular solute-binding protein V428_03500 PF00005 ABC transporter V428_03500 PF08402 TOBE domain V428_03505 PF04261 Dyp-type peroxidase family V428_03510 PF01316 Arginine repressor, DNA binding domain V428_03510 PF02863 Arginine repressor, C-terminal domain V428_03515 PF00005 ABC transporter V428_03520 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_03525 PF00528 Binding-protein-dependent transport system inner membrane component V428_03530 PF00528 Binding-protein-dependent transport system inner membrane component V428_03535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain V428_03535 PF00056 lactate/malate dehydrogenase, NAD binding domain V428_03540 PF08238 Sel1 repeat V428_03545 PF00970 Oxidoreductase FAD-binding domain V428_03545 PF00042 Globin V428_03545 PF00175 Oxidoreductase NAD-binding domain V428_03550 PF02082 Transcriptional regulator V428_03555 PF01595 Cyclin M transmembrane N-terminal domain V428_03555 PF03471 Transporter associated domain V428_03555 PF00571 CBS domain V428_03560 PF01578 Cytochrome C assembly protein V428_03565 PF02978 Signal peptide binding domain V428_03565 PF00448 SRP54-type protein, GTPase domain V428_03565 PF02881 SRP54-type protein, helical bundle domain V428_03570 PF00886 Ribosomal protein S16 V428_03575 PF05239 PRC-barrel domain V428_03575 PF01782 RimM N-terminal domain V428_03580 PF01746 tRNA (Guanine-1)-methyltransferase V428_03585 PF01245 Ribosomal protein L19 V428_03595 PF02976 DNA mismatch repair enzyme MutH V428_03600 PF00293 NUDIX domain V428_03605 PF01590 GAF domain V428_03605 PF05524 PEP-utilising enzyme, N-terminal V428_03605 PF00391 PEP-utilising enzyme, mobile domain V428_03605 PF02896 PEP-utilising enzyme, TIM barrel domain V428_03610 PF01790 Prolipoprotein diacylglyceryl transferase V428_03615 PF00303 Thymidylate synthase V428_03620 PF06965 Na+/H+ antiporter 1 V428_03630 PF03466 LysR substrate binding domain V428_03630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03635 PF01022 Bacterial regulatory protein, arsR family V428_03640 PF01649 Ribosomal protein S20 V428_03645 PF03023 Lipid II flippase MurJ V428_03650 PF01687 Riboflavin kinase V428_03650 PF06574 FAD synthetase V428_03655 PF08264 Anticodon-binding domain of tRNA V428_03655 PF00133 tRNA synthetases class I (I, L, M and V) V428_03655 PF06827 Zinc finger found in FPG and IleRS V428_03660 PF01252 Signal peptidase (SPase) II V428_03665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_03670 PF02401 LytB protein V428_03695 PF05567 Neisseria PilC beta-propeller domain V428_03730 PF02540 NAD synthase V428_03730 PF00795 Carbon-nitrogen hydrolase V428_03735 PF00543 Nitrogen regulatory protein P-II V428_03745 PF02664 S-Ribosylhomocysteinase (LuxS) V428_03750 PF00990 Diguanylate cyclase, GGDEF domain V428_03755 PF08206 Ribonuclease B OB domain V428_03755 PF00773 RNB domain V428_03755 PF17876 Cold shock domain V428_03755 PF00575 S1 RNA binding domain V428_03755 PF08461 Ribonuclease R winged-helix domain V428_03760 PF00588 SpoU rRNA Methylase family V428_03760 PF08032 RNA 2'-O ribose methyltransferase substrate binding V428_03770 PF13673 Acetyltransferase (GNAT) domain V428_03790 PF01566 Natural resistance-associated macrophage protein V428_03795 PF01250 Ribosomal protein S6 V428_03800 PF01084 Ribosomal protein S18 V428_03805 PF03948 Ribosomal protein L9, C-terminal domain V428_03805 PF01281 Ribosomal protein L9, N-terminal domain V428_03810 PF00970 Oxidoreductase FAD-binding domain V428_03810 PF00175 Oxidoreductase NAD-binding domain V428_03830 PF00550 Phosphopantetheine attachment site V428_03830 PF00698 Acyl transferase domain V428_03830 PF14765 Polyketide synthase dehydratase V428_03830 PF08240 Alcohol dehydrogenase GroES-like domain V428_03830 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_03830 PF08659 KR domain V428_03830 PF08990 Erythronolide synthase docking V428_03830 PF16197 Ketoacyl-synthetase C-terminal extension V428_03830 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_03835 PF09335 SNARE associated Golgi protein V428_03840 PF00675 Insulinase (Peptidase family M16) V428_03840 PF05193 Peptidase M16 inactive domain V428_03845 PF04262 Glutamate-cysteine ligase V428_03855 PF00501 AMP-binding enzyme V428_03865 PF00583 Acetyltransferase (GNAT) family V428_03875 PF12592 Protein of unknown function (DUF3763) V428_03875 PF17868 AAA lid domain V428_03875 PF07728 AAA domain (dynein-related subfamily) V428_03880 PF05762 VWA domain containing CoxE-like protein V428_03885 PF00563 EAL domain V428_03885 PF00990 Diguanylate cyclase, GGDEF domain V428_03885 PF13426 PAS domain V428_03890 PF00990 Diguanylate cyclase, GGDEF domain V428_03890 PF00072 Response regulator receiver domain V428_03895 PF03144 Elongation factor Tu domain 2 V428_03895 PF00009 Elongation factor Tu GTP binding domain V428_03895 PF16658 Class II release factor RF3, C-terminal domain V428_03915 PF00583 Acetyltransferase (GNAT) family V428_03920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03930 PF03466 LysR substrate binding domain V428_03935 PF04371 Porphyromonas-type peptidyl-arginine deiminase V428_03940 PF01425 Amidase V428_03960 PF00753 Metallo-beta-lactamase superfamily V428_03970 PF00270 DEAD/DEAH box helicase V428_03970 PF00271 Helicase conserved C-terminal domain V428_03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03975 PF03466 LysR substrate binding domain V428_03990 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase V428_03995 PF00034 Cytochrome c V428_03995 PF03150 Di-haem cytochrome c peroxidase V428_04010 PF00445 Ribonuclease T2 family V428_04020 PF03060 Nitronate monooxygenase V428_04050 PF09297 NADH pyrophosphatase zinc ribbon domain V428_04050 PF00293 NUDIX domain V428_04050 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain V428_04055 PF16527 Two-component sensor protein CpxA, periplasmic domain V428_04055 PF00512 His Kinase A (phospho-acceptor) domain V428_04055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04055 PF00672 HAMP domain V428_04060 PF00486 Transcriptional regulatory protein, C terminal V428_04060 PF00072 Response regulator receiver domain V428_04065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_04070 PF12704 MacB-like periplasmic core domain V428_04070 PF02687 FtsX-like permease family V428_04070 PF00005 ABC transporter V428_04075 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_04080 PF00005 ABC transporter V428_04085 PF00528 Binding-protein-dependent transport system inner membrane component V428_04090 PF00528 Binding-protein-dependent transport system inner membrane component V428_04095 PF00291 Pyridoxal-phosphate dependent enzyme V428_04100 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_04100 PF00326 Prolyl oligopeptidase family V428_04120 PF03710 Glutamate-ammonia ligase adenylyltransferase V428_04120 PF08335 GlnD PII-uridylyltransferase V428_04130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_04130 PF02743 Cache domain V428_04130 PF00672 HAMP domain V428_04135 PF00027 Cyclic nucleotide-binding domain V428_04135 PF00520 Ion transport protein V428_04140 PF08239 Bacterial SH3 domain V428_04145 PF18327 Proline utilization A proline dehydrogenase N-terminal domain V428_04145 PF14850 DNA-binding domain of Proline dehydrogenase V428_04145 PF00171 Aldehyde dehydrogenase family V428_04145 PF01619 Proline dehydrogenase V428_04150 PF00293 NUDIX domain V428_04150 PF09297 NADH pyrophosphatase zinc ribbon domain V428_04155 PF01208 Uroporphyrinogen decarboxylase (URO-D) V428_04160 PF00480 ROK family V428_04165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_04165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_04170 PF00162 Phosphoglycerate kinase V428_04175 PF01116 Fructose-bisphosphate aldolase class-II V428_04180 PF01266 FAD dependent oxidoreductase V428_04190 PF02683 Cytochrome C biogenesis protein transmembrane region V428_04190 PF11412 Disulphide bond corrector protein DsbC V428_04195 PF03091 CutA1 divalent ion tolerance protein V428_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_04210 PF03466 LysR substrate binding domain V428_04215 PF01571 Aminomethyltransferase folate-binding domain V428_04220 PF03937 Flavinator of succinate dehydrogenase V428_04230 PF02910 Fumarate reductase flavoprotein C-term V428_04230 PF00890 FAD binding domain V428_04235 PF04542 Sigma-70 region 2 V428_04235 PF08281 Sigma-70, region 4 V428_04240 PF03873 Anti sigma-E protein RseA, C-terminal domain V428_04240 PF03872 Anti sigma-E protein RseA, N-terminal domain V428_04245 PF03888 MucB/RseB N-terminal domain V428_04245 PF17188 MucB/RseB C-terminal domain V428_04255 PF00009 Elongation factor Tu GTP binding domain V428_04255 PF00679 Elongation factor G C-terminus V428_04255 PF03144 Elongation factor Tu domain 2 V428_04255 PF06421 GTP-binding protein LepA C-terminus V428_04260 PF10502 Signal peptidase, peptidase S26 V428_04265 PF14622 Ribonuclease-III-like V428_04265 PF00035 Double-stranded RNA binding motif V428_04270 PF07650 KH domain V428_04270 PF01926 50S ribosome-binding GTPase V428_04275 PF11967 Recombination protein O N terminal V428_04275 PF02565 Recombination protein O C terminal V428_04280 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ V428_04290 PF01116 Fructose-bisphosphate aldolase class-II V428_04295 PF01979 Amidohydrolase family V428_04300 PF03610 PTS system fructose IIA component V428_04305 PF03613 PTS system mannose/fructose/sorbose family IID component V428_04310 PF03609 PTS system sorbose-specific iic component V428_04315 PF03830 PTS system sorbose subfamily IIB component V428_04320 PF01380 SIS domain V428_04325 PF08013 Tagatose 6 phosphate kinase V428_04330 PF00455 DeoR C terminal sensor domain V428_04330 PF08220 DeoR-like helix-turn-helix domain V428_04335 PF01510 N-acetylmuramoyl-L-alanine amidase V428_04340 PF07308 Protein of unknown function (DUF1456) V428_04345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V428_04345 PF00072 Response regulator receiver domain V428_04345 PF01627 Hpt domain V428_04345 PF00672 HAMP domain V428_04345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04345 PF00512 His Kinase A (phospho-acceptor) domain V428_04350 PF05958 tRNA (Uracil-5-)-methyltransferase V428_04350 PF01938 TRAM domain V428_04355 PF02824 TGS domain V428_04355 PF13291 ACT domain V428_04355 PF04607 Region found in RelA / SpoT proteins V428_04360 PF03819 MazG nucleotide pyrophosphohydrolase domain V428_04365 PF06418 CTP synthase N-terminus V428_04365 PF00117 Glutamine amidotransferase class-I V428_04370 PF03952 Enolase, N-terminal domain V428_04370 PF00113 Enolase, C-terminal TIM barrel domain V428_04375 PF04977 Septum formation initiator V428_04380 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase V428_04385 PF02542 YgbB family V428_04390 PF01142 tRNA pseudouridine synthase D (TruD) V428_04395 PF01975 Survival protein SurE V428_04405 PF09335 SNARE associated Golgi protein V428_04410 PF01551 Peptidase family M23 V428_04410 PF01476 LysM domain V428_04415 PF04542 Sigma-70 region 2 V428_04415 PF04539 Sigma-70 region 3 V428_04415 PF04545 Sigma-70, region 4 V428_04415 PF00140 Sigma-70 factor, region 1.2 V428_04420 PF00814 Glycoprotease family V428_04425 PF01165 Ribosomal protein S21 V428_04430 PF09424 Yqey-like protein V428_04435 PF01807 CHC2 zinc finger V428_04435 PF08275 DNA primase catalytic core, N-terminal domain V428_04435 PF08278 DNA primase DnaG DnaB-binding V428_04435 PF10410 DnaB-helicase binding domain of primase V428_04440 PF00140 Sigma-70 factor, region 1.2 V428_04440 PF03979 Sigma-70 factor, region 1.1 V428_04440 PF04545 Sigma-70, region 4 V428_04440 PF04546 Sigma-70, non-essential region V428_04440 PF04539 Sigma-70 region 3 V428_04440 PF04542 Sigma-70 region 2 V428_04455 PF00128 Alpha amylase, catalytic domain V428_04470 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain V428_04470 PF02843 Phosphoribosylglycinamide synthetase, C domain V428_04470 PF02844 Phosphoribosylglycinamide synthetase, N domain V428_04475 PF01808 AICARFT/IMPCHase bienzyme V428_04475 PF02142 MGS-like domain V428_04480 PF13411 MerR HTH family regulatory protein V428_04485 PF01872 RibD C-terminal domain V428_04490 PF03889 Alternative ribosome-rescue factor A V428_04495 PF04055 Radical SAM superfamily V428_04495 PF06969 HemN C-terminal domain V428_04500 PF01725 Ham1 family V428_04505 PF07690 Major Facilitator Superfamily V428_04510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_04510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_04520 PF13302 Acetyltransferase (GNAT) domain V428_04535 PF03413 Peptidase propeptide and YPEB domain V428_04535 PF04151 Bacterial pre-peptidase C-terminal domain V428_04535 PF07504 Fungalysin/Thermolysin Propeptide Motif V428_04535 PF01447 Thermolysin metallopeptidase, catalytic domain V428_04535 PF02868 Thermolysin metallopeptidase, alpha-helical domain V428_04540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_04540 PF03466 LysR substrate binding domain V428_04545 PF07690 Major Facilitator Superfamily V428_04550 PF00267 Gram-negative porin V428_04555 PF03605 Anaerobic c4-dicarboxylate membrane transporter V428_04560 PF00206 Lyase V428_04560 PF10415 Fumarase C C-terminus V428_04565 PF04186 FxsA cytoplasmic membrane protein V428_04570 PF01554 MatE V428_04575 PF00166 Chaperonin 10 Kd subunit V428_04580 PF00118 TCP-1/cpn60 chaperonin family V428_04590 PF00563 EAL domain V428_04590 PF03707 Bacterial signalling protein N terminal repeat V428_04590 PF13188 PAS domain V428_04590 PF00990 Diguanylate cyclase, GGDEF domain V428_04600 PF00849 RNA pseudouridylate synthase V428_04605 PF18337 RapA N-terminal Tudor like domain V428_04605 PF00176 SNF2 family N-terminal domain V428_04605 PF12137 RNA polymerase recycling family C-terminal V428_04605 PF00271 Helicase conserved C-terminal domain V428_04605 PF18339 RapA N-terminal Tudor like domain 1 V428_04635 PF02867 Ribonucleotide reductase, barrel domain V428_04635 PF00317 Ribonucleotide reductase, all-alpha domain V428_04635 PF08343 Ribonucleotide reductase N-terminal V428_04645 PF13638 PIN domain V428_04645 PF02562 PhoH-like protein V428_04650 PF00005 ABC transporter V428_04655 PF00528 Binding-protein-dependent transport system inner membrane component V428_04675 PF00694 Aconitase C-terminal domain V428_04680 PF00330 Aconitase family (aconitate hydratase) V428_04685 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_04690 PF00682 HMGL-like V428_04690 PF08502 LeuA allosteric (dimerisation) domain V428_04700 PF01569 PAP2 superfamily V428_04715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_04715 PF00205 Thiamine pyrophosphate enzyme, central domain V428_04715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_04720 PF10369 Small subunit of acetolactate synthase V428_04725 PF07085 DRTGG domain V428_04725 PF01515 Phosphate acetyl/butaryl transferase V428_04730 PF00871 Acetokinase family V428_04735 PF04217 Protein of unknown function, DUF412 V428_04740 PF03887 YfbU domain V428_04745 PF00578 AhpC/TSA family V428_04750 PF01842 ACT domain V428_04755 PF00701 Dihydrodipicolinate synthetase family V428_04760 PF06804 NlpB/DapX lipoprotein V428_04765 PF01259 SAICAR synthetase V428_04775 PF03466 LysR substrate binding domain V428_04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_04780 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) V428_04800 PF00072 Response regulator receiver domain V428_04800 PF00989 PAS fold V428_04800 PF01627 Hpt domain V428_04800 PF18415 Histidine kinase receptor ArcB trans-membrane domain V428_04800 PF00512 His Kinase A (phospho-acceptor) domain V428_04800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04805 PF13286 Phosphohydrolase-associated domain V428_04805 PF01966 HD domain V428_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04815 PF00512 His Kinase A (phospho-acceptor) domain V428_04815 PF09456 RcsC Alpha-Beta-Loop (ABL) V428_04815 PF00072 Response regulator receiver domain V428_04820 PF00563 EAL domain V428_04820 PF03707 Bacterial signalling protein N terminal repeat V428_04820 PF00990 Diguanylate cyclase, GGDEF domain V428_04825 PF12729 Four helix bundle sensory module for signal transduction V428_04825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_04825 PF00672 HAMP domain V428_04830 PF02357 Transcription termination factor nusG V428_04835 PF03180 NLPA lipoprotein V428_04840 PF00528 Binding-protein-dependent transport system inner membrane component V428_04845 PF00005 ABC transporter V428_04845 PF09383 NIL domain V428_04855 PF00480 ROK family V428_04860 PF08331 Domain of unknown function (DUF1730) V428_04865 PF01256 Carbohydrate kinase V428_04865 PF03853 YjeF-related protein N-terminus V428_04870 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE V428_04875 PF01520 N-acetylmuramoyl-L-alanine amidase V428_04885 PF01119 DNA mismatch repair protein, C-terminal domain V428_04885 PF08676 MutL C terminal dimerisation domain V428_04895 PF17209 Hfq protein V428_04900 PF13167 GTP-binding GTPase N-terminal V428_04900 PF16360 GTP-binding GTPase Middle Region V428_04900 PF01926 50S ribosome-binding GTPase V428_04905 PF12221 Bacterial membrane protein N terminal V428_04905 PF01145 SPFH domain / Band 7 family V428_04910 PF01145 SPFH domain / Band 7 family V428_04915 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) V428_04920 PF00348 Polyprenyl synthetase V428_04925 PF00829 Ribosomal prokaryotic L21 protein V428_04930 PF01016 Ribosomal L27 protein V428_04935 PF01926 50S ribosome-binding GTPase V428_04935 PF01018 GTP1/OBG V428_04945 PF00501 AMP-binding enzyme V428_04945 PF13193 AMP-binding enzyme C-terminal domain V428_04965 PF00296 Luciferase-like monooxygenase V428_04975 PF00149 Calcineurin-like phosphoesterase V428_04980 PF04379 ApaG domain V428_04985 PF00398 Ribosomal RNA adenine dimethylase V428_04990 PF04166 Pyridoxal phosphate biosynthetic protein PdxA V428_04995 PF00639 PPIC-type PPIASE domain V428_04995 PF09312 SurA N-terminal domain V428_05000 PF03968 OstA-like protein V428_05000 PF04453 LPS transport system D V428_05005 PF01636 Phosphotransferase enzyme family V428_05010 PF00483 Nucleotidyl transferase V428_05015 PF05099 Tellurite resistance protein TerB V428_05015 PF00226 DnaJ domain V428_05020 PF00860 Permease family V428_05030 PF12848 ABC transporter V428_05030 PF00005 ABC transporter V428_05035 PF00589 Phage integrase family V428_05035 PF12167 Arm DNA-binding domain V428_05080 PF01381 Helix-turn-helix V428_05080 PF00717 Peptidase S24-like V428_05160 PF01555 DNA methylase V428_05165 PF00004 ATPase family associated with various cellular activities (AAA) V428_05205 PF03354 Phage Terminase V428_05220 PF01343 Peptidase family S49 V428_05325 PF01048 Phosphorylase superfamily V428_05330 PF01464 Transglycosylase SLT domain V428_05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_05345 PF03466 LysR substrate binding domain V428_05350 PF01048 Phosphorylase superfamily V428_05355 PF07670 Nucleoside recognition V428_05355 PF07662 Na+ dependent nucleoside transporter C-terminus V428_05355 PF01773 Na+ dependent nucleoside transporter N-terminus V428_05360 PF01791 DeoC/LacD family aldolase V428_05370 PF01370 NAD dependent epimerase/dehydratase family V428_05380 PF00005 ABC transporter V428_05385 PF01032 FecCD transport family V428_05395 PF06228 Haem utilisation ChuX/HutX V428_05400 PF01243 Pyridoxamine 5'-phosphate oxidase V428_05420 PF07715 TonB-dependent Receptor Plug Domain V428_05420 PF00593 TonB dependent receptor V428_05425 PF12832 MFS_1 like family V428_05430 PF13443 Cro/C1-type HTH DNA-binding domain V428_05440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_05440 PF00512 His Kinase A (phospho-acceptor) domain V428_05440 PF00989 PAS fold V428_05445 PF08329 Chitinase A, N-terminal domain V428_05445 PF00704 Glycosyl hydrolases family 18 V428_05450 PF12561 ToxR activated gene A lipoprotein domain V428_05450 PF17945 Beta/Gamma crystallin V428_05455 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V428_05455 PF18416 N-acetylglucosamine binding protein domain 2 V428_05460 PF13847 Methyltransferase domain V428_05465 PF00027 Cyclic nucleotide-binding domain V428_05465 PF13545 Crp-like helix-turn-helix domain V428_05470 PF02566 OsmC-like protein V428_05485 PF00485 Phosphoribulokinase / Uridine kinase family V428_05490 PF00893 Small Multidrug Resistance protein V428_05495 PF00892 EamA-like transporter family V428_05500 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase V428_05505 PF01522 Polysaccharide deacetylase V428_05510 PF01370 NAD dependent epimerase/dehydratase family V428_05510 PF00551 Formyl transferase V428_05510 PF02911 Formyl transferase, C-terminal domain V428_05515 PF00535 Glycosyl transferase family 2 V428_05520 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_05525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V428_05525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V428_05525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V428_05530 PF06794 Uncharacterised protein family (UPF0270) V428_05535 PF00990 Diguanylate cyclase, GGDEF domain V428_05535 PF01590 GAF domain V428_05535 PF00563 EAL domain V428_05535 PF00360 Phytochrome region V428_05545 PF01584 CheW-like domain V428_05545 PF00072 Response regulator receiver domain V428_05555 PF09526 Probable metal-binding protein (DUF2387) V428_05560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_05565 PF04102 SlyX V428_05575 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_05575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_05580 PF00072 Response regulator receiver domain V428_05580 PF00158 Sigma-54 interaction domain V428_05580 PF02954 Bacterial regulatory protein, Fis family V428_05600 PF00149 Calcineurin-like phosphoesterase V428_05600 PF02872 5'-nucleotidase, C-terminal domain V428_05605 PF00563 EAL domain V428_05605 PF12792 CSS motif domain associated with EAL V428_05620 PF03796 DnaB-like helicase C terminal domain V428_05620 PF00772 DnaB-like helicase N terminal domain V428_05625 PF01168 Alanine racemase, N-terminal domain V428_05625 PF00842 Alanine racemase, C-terminal domain V428_05635 PF12838 4Fe-4S dicluster domain V428_05645 PF01590 GAF domain V428_05645 PF00563 EAL domain V428_05645 PF00989 PAS fold V428_05645 PF00990 Diguanylate cyclase, GGDEF domain V428_05670 PF00266 Aminotransferase class-V V428_05675 PF01339 CheB methylesterase V428_05675 PF00072 Response regulator receiver domain V428_05680 PF03975 CheD chemotactic sensory transduction V428_05685 PF03705 CheR methyltransferase, all-alpha domain V428_05685 PF01739 CheR methyltransferase, SAM binding domain V428_05690 PF02203 Tar ligand binding domain homologue V428_05690 PF00672 HAMP domain V428_05690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_05695 PF01584 CheW-like domain V428_05700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_05700 PF12729 Four helix bundle sensory module for signal transduction V428_05700 PF00672 HAMP domain V428_05705 PF01627 Hpt domain V428_05705 PF07194 P2 response regulator binding domain V428_05705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_05705 PF02895 Signal transducing histidine kinase, homodimeric domain V428_05705 PF01584 CheW-like domain V428_05715 PF00072 Response regulator receiver domain V428_05720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_05720 PF00672 HAMP domain V428_05720 PF02743 Cache domain V428_05730 PF03466 LysR substrate binding domain V428_05730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_05735 PF01810 LysE type translocator V428_05740 PF01136 Peptidase family U32 V428_05740 PF12392 Collagenase V428_05745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_05745 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V428_05750 PF02805 Metal binding domain of Ada V428_05750 PF06029 AlkA N-terminal domain V428_05750 PF00730 HhH-GPD superfamily base excision DNA repair protein V428_05750 PF12833 Helix-turn-helix domain V428_05760 PF02074 Carboxypeptidase Taq (M32) metallopeptidase V428_05785 PF00106 short chain dehydrogenase V428_05790 PF03573 outer membrane porin, OprD family V428_05795 PF00672 HAMP domain V428_05795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_05795 PF02743 Cache domain V428_05805 PF07995 Glucose / Sorbosone dehydrogenase V428_05810 PF00916 Sulfate permease family V428_05810 PF01740 STAS domain V428_05815 PF03976 Polyphosphate kinase 2 (PPK2) V428_05835 PF00872 Transposase, Mutator family V428_05840 PF13649 Methyltransferase domain V428_05875 PF00158 Sigma-54 interaction domain V428_05875 PF01590 GAF domain V428_05880 PF00005 ABC transporter V428_05900 PF00593 TonB dependent receptor V428_05900 PF07715 TonB-dependent Receptor Plug Domain V428_05925 PF12137 RNA polymerase recycling family C-terminal V428_05925 PF00176 SNF2 family N-terminal domain V428_05925 PF18339 RapA N-terminal Tudor like domain 1 V428_05925 PF18337 RapA N-terminal Tudor like domain V428_05925 PF00271 Helicase conserved C-terminal domain V428_05930 PF16124 RecQ zinc-binding V428_05930 PF00570 HRDC domain V428_05930 PF09382 RQC domain V428_05930 PF00270 DEAD/DEAH box helicase V428_05930 PF00271 Helicase conserved C-terminal domain V428_05950 PF00271 Helicase conserved C-terminal domain V428_05950 PF16124 RecQ zinc-binding V428_05950 PF09382 RQC domain V428_05950 PF00570 HRDC domain V428_05950 PF00270 DEAD/DEAH box helicase V428_05970 PF06508 Queuosine biosynthesis protein QueC V428_05975 PF04055 Radical SAM superfamily V428_05985 PF04002 RadC-like JAB domain V428_06030 PF09588 YqaJ-like viral recombinase domain V428_06060 PF00800 Prephenate dehydratase V428_06060 PF01817 Chorismate mutase type II V428_06090 PF08349 Protein of unknown function (DUF1722) V428_06095 PF13411 MerR HTH family regulatory protein V428_06100 PF00875 DNA photolyase V428_06100 PF03441 FAD binding domain of DNA photolyase V428_06110 PF00106 short chain dehydrogenase V428_06150 PF00210 Ferritin-like domain V428_06160 PF03063 Prismane/CO dehydrogenase family V428_06165 PF00042 Globin V428_06165 PF00970 Oxidoreductase FAD-binding domain V428_06165 PF00175 Oxidoreductase NAD-binding domain V428_06170 PF16363 GDP-mannose 4,6 dehydratase V428_06175 PF06965 Na+/H+ antiporter 1 V428_06175 PF13462 Thioredoxin V428_06185 PF03472 Autoinducer binding domain V428_06185 PF00196 Bacterial regulatory proteins, luxR family V428_06195 PF04717 Type VI secretion system, phage-baseplate injector V428_06215 PF03466 LysR substrate binding domain V428_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_06220 PF03306 Alpha-acetolactate decarboxylase V428_06225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_06225 PF00205 Thiamine pyrophosphate enzyme, central domain V428_06225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_06230 PF01965 DJ-1/PfpI family V428_06235 PF02558 Ketopantoate reductase PanE/ApbA V428_06235 PF08546 Ketopantoate reductase PanE/ApbA C terminal V428_06240 PF04461 Protein of unknown function (DUF520) V428_06245 PF03502 Nucleoside-specific channel-forming protein, Tsx V428_06250 PF07690 Major Facilitator Superfamily V428_06260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V428_06270 PF05175 Methyltransferase small domain V428_06275 PF01722 BolA-like protein V428_06280 PF11973 NQRA C-terminal domain V428_06280 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) V428_06285 PF03116 NQR2, RnfD, RnfE family V428_06290 PF04205 FMN-binding domain V428_06295 PF02508 Rnf-Nqr subunit, membrane protein V428_06300 PF02508 Rnf-Nqr subunit, membrane protein V428_06305 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_06305 PF00970 Oxidoreductase FAD-binding domain V428_06305 PF00175 Oxidoreductase NAD-binding domain V428_06310 PF02424 ApbE family V428_06325 PF11798 IMS family HHH motif V428_06325 PF00817 impB/mucB/samB family V428_06325 PF11799 impB/mucB/samB family C-terminal domain V428_06330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_06330 PF00672 HAMP domain V428_06335 PF03466 LysR substrate binding domain V428_06335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_06345 PF04241 Protein of unknown function (DUF423) V428_06350 PF18125 RlmM ferredoxin-like domain V428_06350 PF01728 FtsJ-like methyltransferase V428_06360 PF18324 Hypothetical protein TT1725 V428_06360 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_06365 PF01367 5'-3' exonuclease, C-terminal SAM fold V428_06365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V428_06370 PF03641 Possible lysine decarboxylase V428_06370 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases V428_06370 PF11892 Domain of unknown function (DUF3412) V428_06375 PF07694 5TMR of 5TMR-LYT V428_06375 PF00990 Diguanylate cyclase, GGDEF domain V428_06385 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term V428_06385 PF14489 QueF-like protein V428_06390 PF07348 Syd protein (SUKH-2) V428_06395 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) V428_06420 PF04287 tRNA pseudouridine synthase C V428_06425 PF00849 RNA pseudouridylate synthase V428_06430 PF00258 Flavodoxin V428_06435 PF02264 LamB porin V428_06440 PF07148 Maltose operon periplasmic protein precursor (MalM) V428_06445 PF00367 phosphotransferase system, EIIB V428_06445 PF02378 Phosphotransferase system, EIIC V428_06450 PF11944 Protein of unknown function (DUF3461) V428_06455 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal V428_06455 PF14602 Hexapeptide repeat of succinyl-transferase V428_06455 PF00132 Bacterial transferase hexapeptide (six repeats) V428_06460 PF01909 Nucleotidyltransferase domain V428_06460 PF01966 HD domain V428_06460 PF08335 GlnD PII-uridylyltransferase V428_06460 PF01842 ACT domain V428_06465 PF00557 Metallopeptidase family M24 V428_06470 PF00318 Ribosomal protein S2 V428_06475 PF00889 Elongation factor TS V428_06480 PF00696 Amino acid kinase family V428_06485 PF01765 Ribosome recycling factor V428_06490 PF01255 Putative undecaprenyl diphosphate synthase V428_06500 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain V428_06500 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase V428_06500 PF13288 DXP reductoisomerase C-terminal domain V428_06510 PF17820 PDZ domain V428_06510 PF02163 Peptidase family M50 V428_06515 PF01103 Surface antigen V428_06515 PF07244 Surface antigen variable number repeat V428_06520 PF03938 Outer membrane protein (OmpH-like) V428_06525 PF00132 Bacterial transferase hexapeptide (six repeats) V428_06525 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD V428_06530 PF07977 FabA-like domain V428_06535 PF00132 Bacterial transferase hexapeptide (six repeats) V428_06535 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 V428_06540 PF02684 Lipid-A-disaccharide synthetase V428_06545 PF01351 Ribonuclease HII V428_06550 PF07733 Bacterial DNA polymerase III alpha NTPase domain V428_06550 PF14579 Helix-hairpin-helix motif V428_06550 PF01336 OB-fold nucleic acid binding domain V428_06550 PF02811 PHP domain V428_06550 PF17657 Bacterial DNA polymerase III alpha subunit finger domain V428_06555 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit V428_06560 PF18500 CadC C-terminal domain 1 V428_06560 PF00486 Transcriptional regulatory protein, C terminal V428_06565 PF13520 Amino acid permease V428_06570 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V428_06570 PF01276 Orn/Lys/Arg decarboxylase, major domain V428_06570 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V428_06575 PF08543 Phosphomethylpyrimidine kinase V428_06595 PF12706 Beta-lactamase superfamily domain V428_06600 PF03466 LysR substrate binding domain V428_06600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_06605 PF13520 Amino acid permease V428_06610 PF13302 Acetyltransferase (GNAT) domain V428_06615 PF12848 ABC transporter V428_06615 PF00005 ABC transporter V428_06615 PF16326 ABC transporter C-terminal domain V428_06625 PF01431 Peptidase family M13 V428_06625 PF05649 Peptidase family M13 V428_06630 PF09179 TilS substrate binding domain V428_06630 PF01171 PP-loop family V428_06630 PF11734 TilS substrate C-terminal domain V428_06635 PF00990 Diguanylate cyclase, GGDEF domain V428_06640 PF02080 TrkA-C domain V428_06640 PF02254 TrkA-N domain V428_06640 PF00999 Sodium/hydrogen exchanger family V428_06660 PF00196 Bacterial regulatory proteins, luxR family V428_06660 PF00072 Response regulator receiver domain V428_06670 PF00128 Alpha amylase, catalytic domain V428_06685 PF00535 Glycosyl transferase family 2 V428_06700 PF01471 Putative peptidoglycan binding domain V428_06700 PF03734 L,D-transpeptidase catalytic domain V428_06705 PF05951 Bacterial protein of unknown function (DUF882) V428_06715 PF03458 UPF0126 domain V428_06725 PF06470 SMC proteins Flexible Hinge Domain V428_06725 PF02463 RecF/RecN/SMC N terminal domain V428_06730 PF04354 ZipA, C-terminal FtsZ-binding domain V428_06735 PF01653 NAD-dependent DNA ligase adenylation domain V428_06735 PF03120 NAD-dependent DNA ligase OB-fold domain V428_06735 PF12826 Helix-hairpin-helix motif V428_06735 PF00533 BRCA1 C Terminus (BRCT) domain V428_06735 PF03119 NAD-dependent DNA ligase C4 zinc finger domain V428_06745 PF13597 Anaerobic ribonucleoside-triphosphate reductase V428_06745 PF03477 ATP cone domain V428_06755 PF01679 Proteolipid membrane potential modulator V428_06780 PF00529 HlyD membrane-fusion protein of T1SS V428_06780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_06785 PF01047 MarR family V428_06795 PF03390 2-hydroxycarboxylate transporter family V428_06800 PF03949 Malic enzyme, NAD binding domain V428_06800 PF00390 Malic enzyme, N-terminal domain V428_06805 PF17203 Single cache domain 3 V428_06805 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V428_06805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_06805 PF00989 PAS fold V428_06810 PF12431 Transcriptional regulator V428_06810 PF00072 Response regulator receiver domain V428_06815 PF00892 EamA-like transporter family V428_06825 PF00171 Aldehyde dehydrogenase family V428_06830 PF00158 Sigma-54 interaction domain V428_06830 PF01590 GAF domain V428_06830 PF02954 Bacterial regulatory protein, Fis family V428_06835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_06835 PF02770 Acyl-CoA dehydrogenase, middle domain V428_06835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_06840 PF02515 CoA-transferase family III V428_06845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_06850 PF00486 Transcriptional regulatory protein, C terminal V428_06850 PF00072 Response regulator receiver domain V428_06855 PF11808 Phosphate regulon sensor protein PhoR V428_06855 PF00989 PAS fold V428_06855 PF00512 His Kinase A (phospho-acceptor) domain V428_06855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_06860 PF12849 PBP superfamily domain V428_06865 PF01435 Peptidase family M48 V428_06875 PF00480 ROK family V428_06880 PF03932 CutC family V428_06885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_06885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_06890 PF00005 ABC transporter V428_06910 PF00293 NUDIX domain V428_06920 PF08534 Redoxin V428_06925 PF01699 Sodium/calcium exchanger protein V428_06930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_06930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V428_06935 PF01235 Sodium:alanine symporter family V428_06945 PF00860 Permease family V428_06950 PF00072 Response regulator receiver domain V428_06950 PF00990 Diguanylate cyclase, GGDEF domain V428_06955 PF10692 Protein of unknown function (DUF2498) V428_06960 PF01554 MatE V428_06965 PF12833 Helix-turn-helix domain V428_06970 PF00390 Malic enzyme, N-terminal domain V428_06970 PF03949 Malic enzyme, NAD binding domain V428_06975 PF00691 OmpA family V428_06975 PF01389 OmpA-like transmembrane domain V428_06980 PF01389 OmpA-like transmembrane domain V428_06980 PF00691 OmpA family V428_06985 PF01389 OmpA-like transmembrane domain V428_06985 PF00691 OmpA family V428_07000 PF00209 Sodium:neurotransmitter symporter family V428_07005 PF01734 Patatin-like phospholipase V428_07010 PF00990 Diguanylate cyclase, GGDEF domain V428_07015 PF00529 HlyD membrane-fusion protein of T1SS V428_07015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_07020 PF00873 AcrB/AcrD/AcrF family V428_07030 PF11842 Domain of unknown function (DUF3362) V428_07030 PF08497 Radical SAM N-terminal V428_07030 PF04055 Radical SAM superfamily V428_07055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_07060 PF02075 Crossover junction endodeoxyribonuclease RuvC V428_07065 PF00230 Major intrinsic protein V428_07070 PF01464 Transglycosylase SLT domain V428_07070 PF01551 Peptidase family M23 V428_07070 PF10145 Phage-related minor tail protein V428_07075 PF00128 Alpha amylase, catalytic domain V428_07080 PF01551 Peptidase family M23 V428_07095 PF13091 PLD-like domain V428_07095 PF13396 Phospholipase_D-nuclease N-terminal V428_07105 PF01842 ACT domain V428_07105 PF00551 Formyl transferase V428_07110 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V428_07120 PF00085 Thioredoxin V428_07125 PF01648 4'-phosphopantetheinyl transferase superfamily V428_07130 PF00877 NlpC/P60 family V428_07135 PF05971 RNA methyltransferase V428_07150 PF03734 L,D-transpeptidase catalytic domain V428_07150 PF17969 L,D-transpeptidase C-terminal domain V428_07150 PF01476 LysM domain V428_07160 PF00271 Helicase conserved C-terminal domain V428_07160 PF00176 SNF2 family N-terminal domain V428_07220 PF04002 RadC-like JAB domain V428_07290 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_07300 PF00589 Phage integrase family V428_07300 PF13356 Arm DNA-binding domain V428_07305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_07310 PF00528 Binding-protein-dependent transport system inner membrane component V428_07315 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_07315 PF00528 Binding-protein-dependent transport system inner membrane component V428_07320 PF00005 ABC transporter V428_07320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_07325 PF00465 Iron-containing alcohol dehydrogenase V428_07330 PF05025 RbsD / FucU transport protein family V428_07340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V428_07340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_07345 PF07881 L-fucose isomerase, first N-terminal domain V428_07345 PF07882 L-fucose isomerase, second N-terminal domain V428_07345 PF02952 L-fucose isomerase, C-terminal domain V428_07350 PF07690 Major Facilitator Superfamily V428_07355 PF08220 DeoR-like helix-turn-helix domain V428_07355 PF00455 DeoR C terminal sensor domain V428_07360 PF00141 Peroxidase V428_07365 PF00701 Dihydrodipicolinate synthetase family V428_07370 PF01380 SIS domain V428_07370 PF01418 Helix-turn-helix domain, rpiR family V428_07375 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase V428_07380 PF00480 ROK family V428_07385 PF00474 Sodium:solute symporter family V428_07390 PF04074 YhcH/YjgK/YiaL V428_07420 PF00893 Small Multidrug Resistance protein V428_07425 PF00893 Small Multidrug Resistance protein V428_07435 PF06130 Phosphate propanoyltransferase V428_07440 PF00936 BMC domain V428_07445 PF13187 4Fe-4S dicluster domain V428_07445 PF04055 Radical SAM superfamily V428_07450 PF01228 Glycine radical V428_07450 PF02901 Pyruvate formate lyase-like V428_07455 PF00171 Aldehyde dehydrogenase family V428_07455 PF00465 Iron-containing alcohol dehydrogenase V428_07465 PF00171 Aldehyde dehydrogenase family V428_07465 PF00465 Iron-containing alcohol dehydrogenase V428_07470 PF00936 BMC domain V428_07475 PF00936 BMC domain V428_07480 PF00936 BMC domain V428_07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_07500 PF03466 LysR substrate binding domain V428_07505 PF02634 FdhD/NarQ family V428_07510 PF00384 Molybdopterin oxidoreductase V428_07525 PF00440 Bacterial regulatory proteins, tetR family V428_07530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_07530 PF02770 Acyl-CoA dehydrogenase, middle domain V428_07530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_07530 PF09317 Domain of unknown function (DUF1974) V428_07535 PF00873 AcrB/AcrD/AcrF family V428_07545 PF00224 Pyruvate kinase, barrel domain V428_07545 PF02887 Pyruvate kinase, alpha/beta domain V428_07550 PF01380 SIS domain V428_07550 PF01418 Helix-turn-helix domain, rpiR family V428_07555 PF02685 Glucokinase V428_07565 PF00486 Transcriptional regulatory protein, C terminal V428_07565 PF00072 Response regulator receiver domain V428_07570 PF00664 ABC transporter transmembrane region V428_07570 PF00005 ABC transporter V428_07570 PF03412 Peptidase C39 family V428_07580 PF00664 ABC transporter transmembrane region V428_07580 PF00005 ABC transporter V428_07580 PF03412 Peptidase C39 family V428_07595 PF07634 RtxA repeat V428_07595 PF11713 Peptidase C80 family V428_07595 PF11647 Membrane Localization Domain V428_07595 PF16671 Actin cross-linking domain V428_07595 PF12146 Serine aminopeptidase, S33 V428_07605 PF04055 Radical SAM superfamily V428_07605 PF00919 Uncharacterized protein family UPF0004 V428_07605 PF18693 TRAM domain V428_07610 PF00072 Response regulator receiver domain V428_07620 PF02049 Flagellar hook-basal body complex protein FliE V428_07625 PF08345 Flagellar M-ring protein C-terminal V428_07625 PF01514 Secretory protein of YscJ/FliF family V428_07630 PF01706 FliG C-terminal domain V428_07630 PF14841 FliG middle domain V428_07630 PF14842 FliG N-terminal domain V428_07640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_07640 PF18269 T3SS EscN ATPase C-terminal domain V428_07660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V428_07660 PF02154 Flagellar motor switch protein FliM V428_07665 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V428_07670 PF04347 Flagellar biosynthesis protein, FliO V428_07675 PF00813 FliP family V428_07680 PF01313 Bacterial export proteins, family 3 V428_07685 PF01311 Bacterial export proteins, family 1 V428_07690 PF01312 FlhB HrpN YscU SpaS Family V428_07695 PF00771 FHIPEP family V428_07700 PF00448 SRP54-type protein, GTPase domain V428_07705 PF10609 NUBPL iron-transfer P-loop NTPase V428_07710 PF04542 Sigma-70 region 2 V428_07710 PF04539 Sigma-70 region 3 V428_07710 PF04545 Sigma-70, region 4 V428_07715 PF00072 Response regulator receiver domain V428_07720 PF04344 Chemotaxis phosphatase, CheZ V428_07725 PF01584 CheW-like domain V428_07725 PF02895 Signal transducing histidine kinase, homodimeric domain V428_07725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_07725 PF01627 Hpt domain V428_07725 PF07194 P2 response regulator binding domain V428_07730 PF00072 Response regulator receiver domain V428_07730 PF01339 CheB methylesterase V428_07735 PF01618 MotA/TolQ/ExbB proton channel family V428_07740 PF13677 Membrane MotB of proton-channel complex MotA/MotB V428_07740 PF00691 OmpA family V428_07745 PF13614 AAA domain V428_07755 PF01584 CheW-like domain V428_07765 PF00005 ABC transporter V428_07770 PF03379 CcmB protein V428_07775 PF01578 Cytochrome C assembly protein V428_07780 PF04995 Heme exporter protein D (CcmD) V428_07785 PF03100 CcmE V428_07790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal V428_07790 PF01578 Cytochrome C assembly protein V428_07795 PF08534 Redoxin V428_07800 PF03918 Cytochrome C biogenesis protein V428_07805 PF03918 Cytochrome C biogenesis protein V428_07810 PF04333 MlaA lipoprotein V428_07815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V428_07815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V428_07820 PF00462 Glutaredoxin V428_07825 PF01029 NusB family V428_07825 PF01189 16S rRNA methyltransferase RsmB/F V428_07840 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region V428_07840 PF01243 Pyridoxamine 5'-phosphate oxidase V428_07845 PF02798 Glutathione S-transferase, N-terminal domain V428_07855 PF13508 Acetyltransferase (GNAT) domain V428_07865 PF08007 Cupin superfamily protein V428_07870 PF08328 Adenylosuccinate lyase C-terminal V428_07870 PF00206 Lyase V428_07875 PF04356 Protein of unknown function (DUF489) V428_07885 PF00293 NUDIX domain V428_07890 PF00849 RNA pseudouridylate synthase V428_07900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_07905 PF07690 Major Facilitator Superfamily V428_07910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_07910 PF02378 Phosphotransferase system, EIIC V428_07910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_07930 PF00583 Acetyltransferase (GNAT) family V428_07945 PF00356 Bacterial regulatory proteins, lacI family V428_07945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_07950 PF00367 phosphotransferase system, EIIB V428_07950 PF02378 Phosphotransferase system, EIIC V428_07955 PF00155 Aminotransferase class I and II V428_07980 PF01238 Phosphomannose isomerase type I V428_07985 PF12833 Helix-turn-helix domain V428_07990 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_08000 PF00291 Pyridoxal-phosphate dependent enzyme V428_08005 PF02447 GntP family permease V428_08010 PF03466 LysR substrate binding domain V428_08010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_08035 PF01420 Type I restriction modification DNA specificity domain V428_08040 PF12161 HsdM N-terminal domain V428_08040 PF02384 N-6 DNA Methylase V428_08045 PF08463 EcoEI R protein C-terminal V428_08045 PF00271 Helicase conserved C-terminal domain V428_08045 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) V428_08045 PF04851 Type III restriction enzyme, res subunit V428_08115 PF08765 Mor transcription activator family V428_08150 PF08461 Ribonuclease R winged-helix domain V428_08155 PF11985 Protein of unknown function (DUF3486) V428_08160 PF03237 Terminase-like family V428_08165 PF06074 Protein of unknown function (DUF935) V428_08185 PF10123 Mu-like prophage I protein V428_08190 PF10124 Mu-like prophage major head subunit gpT V428_08265 PF08463 EcoEI R protein C-terminal V428_08265 PF04851 Type III restriction enzyme, res subunit V428_08265 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) V428_08265 PF00271 Helicase conserved C-terminal domain V428_08270 PF01668 SmpB protein V428_08275 PF03364 Polyketide cyclase / dehydrase and lipid transport V428_08285 PF13460 NAD(P)H-binding V428_08290 PF04355 SmpA / OmlA family V428_08320 PF13629 Pilus formation protein N terminal region V428_08320 PF00263 Bacterial type II and III secretion system protein V428_08320 PF04972 BON domain V428_08335 PF00437 Type II/IV secretion system protein V428_08370 PF00465 Iron-containing alcohol dehydrogenase V428_08375 PF01048 Phosphorylase superfamily V428_08380 PF00849 RNA pseudouridylate synthase V428_08385 PF01156 Inosine-uridine preferring nucleoside hydrolase V428_08400 PF07509 Protein of unknown function (DUF1523) V428_08405 PF00672 HAMP domain V428_08405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_08410 PF01810 LysE type translocator V428_08420 PF00999 Sodium/hydrogen exchanger family V428_08420 PF03471 Transporter associated domain V428_08420 PF02080 TrkA-C domain V428_08430 PF03471 Transporter associated domain V428_08430 PF02080 TrkA-C domain V428_08430 PF00999 Sodium/hydrogen exchanger family V428_08440 PF02557 D-alanyl-D-alanine carboxypeptidase V428_08445 PF01546 Peptidase family M20/M25/M40 V428_08445 PF07687 Peptidase dimerisation domain V428_08450 PF03960 ArsC family V428_08455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_08455 PF03466 LysR substrate binding domain V428_08465 PF03606 C4-dicarboxylate anaerobic carrier V428_08470 PF01546 Peptidase family M20/M25/M40 V428_08470 PF07687 Peptidase dimerisation domain V428_08480 PF03605 Anaerobic c4-dicarboxylate membrane transporter V428_08485 PF01336 OB-fold nucleic acid binding domain V428_08485 PF00152 tRNA synthetases class II (D, K and N) V428_08505 PF06968 Biotin and Thiamin Synthesis associated domain V428_08505 PF04055 Radical SAM superfamily V428_08510 PF00155 Aminotransferase class I and II V428_08515 PF08241 Methyltransferase domain V428_08515 PF12697 Alpha/beta hydrolase family V428_08525 PF01435 Peptidase family M48 V428_08530 PF08447 PAS fold V428_08530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_08530 PF13426 PAS domain V428_08535 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_08535 PF03473 MOSC domain V428_08535 PF03476 MOSC N-terminal beta barrel domain V428_08535 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_08535 PF03473 MOSC domain V428_08535 PF03476 MOSC N-terminal beta barrel domain V428_08540 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_08540 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_08540 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region V428_08545 PF10371 Domain of unknown function V428_08545 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V428_08545 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V428_08545 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II V428_08545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_08550 PF01804 Penicillin amidase V428_08570 PF01554 MatE V428_08590 PF00291 Pyridoxal-phosphate dependent enzyme V428_08600 PF00465 Iron-containing alcohol dehydrogenase V428_08610 PF00440 Bacterial regulatory proteins, tetR family V428_08610 PF08359 YsiA-like protein, C-terminal region V428_08615 PF00171 Aldehyde dehydrogenase family V428_08625 PF00877 NlpC/P60 family V428_08630 PF07968 Leukocidin/Hemolysin toxin family V428_08630 PF12563 Hemolytic toxin N terminal V428_08635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_08635 PF03466 LysR substrate binding domain V428_08640 PF00578 AhpC/TSA family V428_08640 PF10417 C-terminal domain of 1-Cys peroxiredoxin V428_08660 PF08003 Protein of unknown function (DUF1698) V428_08665 PF13649 Methyltransferase domain V428_08670 PF01904 Protein of unknown function DUF72 V428_08675 PF01336 OB-fold nucleic acid binding domain V428_08675 PF00152 tRNA synthetases class II (D, K and N) V428_08675 PF02938 GAD domain V428_08680 PF01709 Transcriptional regulator V428_08685 PF08019 Phosphoethanolamine transferase EptA/EptB V428_08685 PF00884 Sulfatase V428_08695 PF01047 MarR family V428_08695 PF00480 ROK family V428_08700 PF01979 Amidohydrolase family V428_08705 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V428_08710 PF02378 Phosphotransferase system, EIIC V428_08710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V428_08710 PF00367 phosphotransferase system, EIIB V428_08715 PF03173 Putative carbohydrate binding domain V428_08715 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain V428_08715 PF00728 Glycosyl hydrolase family 20, catalytic domain V428_08715 PF02838 Glycosyl hydrolase family 20, domain 2 V428_08720 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain V428_08720 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_08725 PF01475 Ferric uptake regulator family V428_08735 PF00258 Flavodoxin V428_08740 PF01402 Ribbon-helix-helix protein, copG family V428_08750 PF12697 Alpha/beta hydrolase family V428_08755 PF17206 SeqA protein N-terminal domain V428_08755 PF03925 SeqA protein C-terminal domain V428_08760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V428_08760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V428_08760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V428_08760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V428_08770 PF01047 MarR family V428_08775 PF13406 Transglycosylase SLT domain V428_08780 PF01066 CDP-alcohol phosphatidyltransferase V428_08785 PF00005 ABC transporter V428_08795 PF13416 Bacterial extracellular solute-binding protein V428_08800 PF00403 Heavy-metal-associated domain V428_08800 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_08800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_08805 PF02627 Carboxymuconolactone decarboxylase family V428_08815 PF01625 Peptide methionine sulfoxide reductase V428_08830 PF01103 Surface antigen V428_08830 PF17243 POTRA domain TamA domain 1 V428_08830 PF07244 Surface antigen variable number repeat V428_08835 PF04357 TamB, inner membrane protein subunit of TAM complex V428_08855 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V428_08860 PF00990 Diguanylate cyclase, GGDEF domain V428_08860 PF03707 Bacterial signalling protein N terminal repeat V428_08860 PF00563 EAL domain V428_08865 PF01464 Transglycosylase SLT domain V428_08865 PF14718 Soluble lytic murein transglycosylase L domain V428_08870 PF00356 Bacterial regulatory proteins, lacI family V428_08880 PF03061 Thioesterase superfamily V428_08890 PF03372 Endonuclease/Exonuclease/phosphatase family V428_08895 PF01476 LysM domain V428_08895 PF01464 Transglycosylase SLT domain V428_08900 PF00753 Metallo-beta-lactamase superfamily V428_08900 PF16123 Hydroxyacylglutathione hydrolase C-terminus V428_08905 PF08241 Methyltransferase domain V428_08910 PF00075 RNase H V428_08915 PF00929 Exonuclease V428_08925 PF11849 Domain of unknown function (DUF3369) V428_08935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_08935 PF02770 Acyl-CoA dehydrogenase, middle domain V428_08935 PF09317 Domain of unknown function (DUF1974) V428_08935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_08940 PF13580 SIS domain V428_08945 PF13230 Glutamine amidotransferases class-II V428_08955 PF01933 Uncharacterised protein family UPF0052 V428_08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_08965 PF01627 Hpt domain V428_08965 PF00512 His Kinase A (phospho-acceptor) domain V428_08965 PF17149 Periplasmic sensor domain found in signal transduction proteins V428_08965 PF00672 HAMP domain V428_08965 PF00072 Response regulator receiver domain V428_08975 PF00196 Bacterial regulatory proteins, luxR family V428_08975 PF00072 Response regulator receiver domain V428_08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_08980 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term V428_08980 PF07730 Histidine kinase V428_08980 PF00672 HAMP domain V428_08985 PF04055 Radical SAM superfamily V428_08985 PF06463 Molybdenum Cofactor Synthesis C V428_08990 PF00037 4Fe-4S binding domain V428_08990 PF12800 4Fe-4S binding domain V428_08990 PF13187 4Fe-4S dicluster domain V428_09005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_09005 PF01568 Molydopterin dinucleotide binding domain V428_09005 PF10518 TAT (twin-arginine translocation) pathway signal sequence V428_09005 PF00384 Molybdopterin oxidoreductase V428_09010 PF12800 4Fe-4S binding domain V428_09010 PF12838 4Fe-4S dicluster domain V428_09015 PF13237 4Fe-4S dicluster domain V428_09015 PF12801 4Fe-4S binding domain V428_09020 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) V428_09025 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_09030 PF00994 Probable molybdopterin binding domain V428_09035 PF01967 MoaC family V428_09040 PF02597 ThiS family V428_09045 PF02391 MoaE protein V428_09055 PF00528 Binding-protein-dependent transport system inner membrane component V428_09060 PF00005 ABC transporter V428_09060 PF03459 TOBE domain V428_09065 PF00561 alpha/beta hydrolase fold V428_09070 PF00899 ThiF family V428_09075 PF00994 Probable molybdopterin binding domain V428_09075 PF03453 MoeA N-terminal region (domain I and II) V428_09075 PF03454 MoeA C-terminal region (domain IV) V428_09080 PF01227 GTP cyclohydrolase I V428_09085 PF17200 Single Cache domain 2 V428_09085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_09085 PF00672 HAMP domain V428_09090 PF01268 Formate--tetrahydrofolate ligase V428_09100 PF03466 LysR substrate binding domain V428_09100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_09105 PF04264 YceI-like domain V428_09130 PF01546 Peptidase family M20/M25/M40 V428_09130 PF07687 Peptidase dimerisation domain V428_09135 PF17810 Arginine decarboxylase helical bundle domain V428_09135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_09135 PF17944 Arginine decarboxylase C-terminal helical extension V428_09150 PF00672 HAMP domain V428_09150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_09160 PF01042 Endoribonuclease L-PSP V428_09165 PF03313 Serine dehydratase alpha chain V428_09170 PF13309 HTH domain V428_09170 PF08348 YheO-like PAS domain V428_09175 PF00300 Histidine phosphatase superfamily (branch 1) V428_09180 PF04851 Type III restriction enzyme, res subunit V428_09180 PF00271 Helicase conserved C-terminal domain V428_09200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase V428_09200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain V428_09210 PF00849 RNA pseudouridylate synthase V428_09210 PF01479 S4 domain V428_09215 PF07690 Major Facilitator Superfamily V428_09225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_09225 PF03466 LysR substrate binding domain V428_09230 PF07690 Major Facilitator Superfamily V428_09255 PF04391 Protein of unknown function (DUF533) V428_09265 PF00155 Aminotransferase class I and II V428_09265 PF00392 Bacterial regulatory proteins, gntR family V428_09270 PF01654 Cytochrome bd terminal oxidase subunit I V428_09275 PF02322 Cytochrome bd terminal oxidase subunit II V428_09285 PF07690 Major Facilitator Superfamily V428_09290 PF00248 Aldo/keto reductase family V428_09310 PF03466 LysR substrate binding domain V428_09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_09315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_09315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V428_09320 PF00230 Major intrinsic protein V428_09325 PF07690 Major Facilitator Superfamily V428_09330 PF00455 DeoR C terminal sensor domain V428_09330 PF08220 DeoR-like helix-turn-helix domain V428_09340 PF01266 FAD dependent oxidoreductase V428_09340 PF16901 C-terminal domain of alpha-glycerophosphate oxidase V428_09345 PF03009 Glycerophosphoryl diester phosphodiesterase family V428_09350 PF00793 DAHP synthetase I family V428_09355 PF01817 Chorismate mutase type II V428_09355 PF02153 Prephenate dehydrogenase V428_09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_09360 PF03466 LysR substrate binding domain V428_09365 PF04219 Protein of unknown function, DUF V428_09370 PF03974 Ecotin V428_09390 PF00326 Prolyl oligopeptidase family V428_09390 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_09395 PF00593 TonB dependent receptor V428_09395 PF07715 TonB-dependent Receptor Plug Domain V428_09400 PF00884 Sulfatase V428_09400 PF11893 Domain of unknown function (DUF3413) V428_09405 PF07208 Protein of unknown function (DUF1414) V428_09410 PF04245 37-kD nucleoid-associated bacterial protein V428_09415 PF01547 Bacterial extracellular solute-binding protein V428_09420 PF00528 Binding-protein-dependent transport system inner membrane component V428_09420 PF14785 Maltose transport system permease protein MalF P2 domain V428_09425 PF00528 Binding-protein-dependent transport system inner membrane component V428_09430 PF08402 TOBE domain V428_09430 PF00005 ABC transporter V428_09435 PF03976 Polyphosphate kinase 2 (PPK2) V428_09440 PF00561 alpha/beta hydrolase fold V428_09450 PF01594 AI-2E family transporter V428_09460 PF13181 Tetratricopeptide repeat V428_09460 PF01435 Peptidase family M48 V428_09465 PF00578 AhpC/TSA family V428_09470 PF03960 ArsC family V428_09490 PF04336 Acyl carrier protein phosphodiesterase V428_09495 PF01979 Amidohydrolase family V428_09500 PF03956 Lysine exporter LysO V428_09505 PF00005 ABC transporter V428_09510 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_09515 PF00528 Binding-protein-dependent transport system inner membrane component V428_09520 PF00528 Binding-protein-dependent transport system inner membrane component V428_09530 PF04055 Radical SAM superfamily V428_09535 PF03707 Bacterial signalling protein N terminal repeat V428_09535 PF00563 EAL domain V428_09535 PF00990 Diguanylate cyclase, GGDEF domain V428_09540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_09540 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_09555 PF00529 HlyD membrane-fusion protein of T1SS V428_09555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_09560 PF02321 Outer membrane efflux protein V428_09565 PF01594 AI-2E family transporter V428_09570 PF01546 Peptidase family M20/M25/M40 V428_09570 PF07687 Peptidase dimerisation domain V428_09575 PF07703 Alpha-2-macroglobulin bait region domain V428_09575 PF07678 A-macroglobulin TED domain V428_09575 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain V428_09575 PF11974 Bacterial alpha-2-macroglobulin MG3 domain V428_09575 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain V428_09575 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain V428_09575 PF00207 Alpha-2-macroglobulin family V428_09575 PF17962 Bacterial macroglobulin domain 6 V428_09575 PF01835 MG2 domain V428_09580 PF00905 Penicillin binding protein transpeptidase domain V428_09580 PF06832 Penicillin-Binding Protein C-terminus Family V428_09580 PF00912 Transglycosylase V428_09590 PF02926 THUMP domain V428_09590 PF02568 Thiamine biosynthesis protein (ThiI) V428_09600 PF03458 UPF0126 domain V428_09605 PF07196 Flagellin hook IN motif V428_09605 PF00700 Bacterial flagellin C-terminal helical region V428_09605 PF00669 Bacterial flagellin N-terminal helical region V428_09610 PF07196 Flagellin hook IN motif V428_09610 PF00700 Bacterial flagellin C-terminal helical region V428_09610 PF00669 Bacterial flagellin N-terminal helical region V428_09620 PF01527 Transposase V428_09635 PF07195 Flagellar hook-associated protein 2 C-terminus V428_09635 PF02465 Flagellar hook-associated protein 2 N-terminus V428_09635 PF07196 Flagellin hook IN motif V428_09640 PF02561 Flagellar protein FliS V428_09670 PF08666 SAF domain V428_09670 PF03102 NeuB family V428_09680 PF00202 Aminotransferase class-III V428_09695 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_09700 PF02719 Polysaccharide biosynthesis protein V428_09705 PF01497 Periplasmic binding protein V428_09715 PF01048 Phosphorylase superfamily V428_09725 PF02535 ZIP Zinc transporter V428_09730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_09730 PF00672 HAMP domain V428_09735 PF00459 Inositol monophosphatase family V428_09745 PF02798 Glutathione S-transferase, N-terminal domain V428_09745 PF00043 Glutathione S-transferase, C-terminal domain V428_09750 PF07690 Major Facilitator Superfamily V428_09755 PF05164 Cell division protein ZapA V428_09760 PF03695 Uncharacterised protein family (UPF0149) V428_09765 PF01494 FAD binding domain V428_09770 PF01494 FAD binding domain V428_09775 PF08669 Glycine cleavage T-protein C-terminal barrel domain V428_09775 PF01571 Aminomethyltransferase folate-binding domain V428_09780 PF01597 Glycine cleavage H-protein V428_09785 PF02347 Glycine cleavage system P-protein V428_09790 PF01022 Bacterial regulatory protein, arsR family V428_09795 PF01758 Sodium Bile acid symporter family V428_09800 PF03960 ArsC family V428_09805 PF08241 Methyltransferase domain V428_09815 PF07690 Major Facilitator Superfamily V428_09820 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_09820 PF13192 Thioredoxin domain V428_09825 PF00578 AhpC/TSA family V428_09825 PF10417 C-terminal domain of 1-Cys peroxiredoxin V428_09830 PF00571 CBS domain V428_09835 PF02547 Queuosine biosynthesis protein V428_09840 PF01702 Queuine tRNA-ribosyltransferase V428_09845 PF02699 Preprotein translocase subunit V428_09850 PF02355 Protein export membrane protein V428_09850 PF07549 SecD/SecF GG Motif V428_09850 PF13721 SecD export protein N-terminal TM region V428_09855 PF07549 SecD/SecF GG Motif V428_09855 PF02355 Protein export membrane protein V428_09865 PF13181 Tetratricopeptide repeat V428_09865 PF07719 Tetratricopeptide repeat V428_09890 PF00588 SpoU rRNA Methylase family V428_09895 PF02082 Transcriptional regulator V428_09900 PF00266 Aminotransferase class-V V428_09905 PF01592 NifU-like N terminal domain V428_09910 PF01521 Iron-sulphur cluster biosynthesis V428_09915 PF07743 HSCB C-terminal oligomerisation domain V428_09920 PF00012 Hsp70 protein V428_09925 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_09930 PF12404 Peptidase V428_09930 PF00883 Cytosol aminopeptidase family, catalytic domain V428_09935 PF12404 Peptidase V428_09935 PF00883 Cytosol aminopeptidase family, catalytic domain V428_09940 PF00334 Nucleoside diphosphate kinase V428_09945 PF04055 Radical SAM superfamily V428_09955 PF13464 Domain of unknown function (DUF4115) V428_09960 PF04551 GcpE protein V428_09965 PF13393 Histidyl-tRNA synthetase V428_09965 PF03129 Anticodon binding domain V428_09970 PF09976 Tetratricopeptide repeat-like domain V428_09975 PF13360 PQQ-like domain V428_09980 PF01926 50S ribosome-binding GTPase V428_09980 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal V428_09985 PF07191 zinc-ribbons V428_09990 PF01464 Transglycosylase SLT domain V428_09990 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_09995 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal V428_09995 PF02769 AIR synthase related protein, C-terminal domain V428_09995 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain V428_10005 PF00361 Proton-conducting membrane transporter V428_10010 PF00361 Proton-conducting membrane transporter V428_10015 PF00361 Proton-conducting membrane transporter V428_10015 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V428_10020 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L V428_10025 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 V428_10030 PF12838 4Fe-4S dicluster domain V428_10035 PF00146 NADH dehydrogenase V428_10040 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V428_10040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_10040 PF00384 Molybdopterin oxidoreductase V428_10045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V428_10045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region V428_10055 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit V428_10055 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit V428_10060 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_10065 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 V428_10070 PF00691 OmpA family V428_10070 PF13677 Membrane MotB of proton-channel complex MotA/MotB V428_10075 PF01618 MotA/TolQ/ExbB proton channel family V428_10090 PF04536 TPM domain V428_10100 PF03411 Penicillin-insensitive murein endopeptidase V428_10110 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) V428_10115 PF00248 Aldo/keto reductase family V428_10130 PF01212 Beta-eliminating lyase V428_10140 PF00072 Response regulator receiver domain V428_10145 PF03466 LysR substrate binding domain V428_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10160 PF13188 PAS domain V428_10160 PF03707 Bacterial signalling protein N terminal repeat V428_10160 PF00990 Diguanylate cyclase, GGDEF domain V428_10160 PF00563 EAL domain V428_10165 PF00881 Nitroreductase family V428_10180 PF07690 Major Facilitator Superfamily V428_10185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10185 PF03466 LysR substrate binding domain V428_10190 PF03466 LysR substrate binding domain V428_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10195 PF00925 GTP cyclohydrolase II V428_10200 PF02224 Cytidylate kinase V428_10205 PF00575 S1 RNA binding domain V428_10210 PF00216 Bacterial DNA-binding protein V428_10220 PF18073 Rubredoxin metal binding domain V428_10225 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V428_10240 PF06508 Queuosine biosynthesis protein QueC V428_10245 PF04055 Radical SAM superfamily V428_10250 PF12843 Putative quorum-sensing-regulated virulence factor V428_10255 PF01923 Cobalamin adenosyltransferase V428_10260 PF00816 H-NS histone family V428_10265 PF03553 Na+/H+ antiporter family V428_10270 PF00265 Thymidine kinase V428_10280 PF10722 Putative bacterial sensory transduction regulator V428_10300 PF04717 Type VI secretion system, phage-baseplate injector V428_10305 PF00182 Chitinase class I V428_10335 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain V428_10335 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain V428_10340 PF00313 'Cold-shock' DNA-binding domain V428_10345 PF02617 ATP-dependent Clp protease adaptor protein ClpS V428_10350 PF10431 C-terminal, D2-small domain, of ClpB protein V428_10350 PF02861 Clp amino terminal domain, pathogenicity island component V428_10350 PF00004 ATPase family associated with various cellular activities (AAA) V428_10350 PF07724 AAA domain (Cdc48 subfamily) V428_10350 PF17871 AAA lid domain V428_10355 PF01176 Translation initiation factor 1A / IF-1 V428_10360 PF04376 Arginine-tRNA-protein transferase, N terminus V428_10360 PF04377 Arginine-tRNA-protein transferase, C terminus V428_10365 PF03588 Leucyl/phenylalanyl-tRNA protein transferase V428_10370 PF05433 Glycine zipper 2TM domain V428_10375 PF00990 Diguanylate cyclase, GGDEF domain V428_10375 PF17158 Membrane-associated sensor, integral membrane domain V428_10380 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_10385 PF01037 Lrp/AsnC ligand binding domain V428_10390 PF09397 Ftsk gamma domain V428_10390 PF17854 FtsK alpha domain V428_10390 PF13491 4TM region of DNA translocase FtsK/SpoIIIE V428_10390 PF01580 FtsK/SpoIIIE family V428_10395 PF03548 Outer membrane lipoprotein carrier protein LolA V428_10400 PF00004 ATPase family associated with various cellular activities (AAA) V428_10400 PF12002 MgsA AAA+ ATPase C terminal V428_10400 PF16193 AAA C-terminal domain V428_10410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_10410 PF02403 Seryl-tRNA synthetase N-terminal domain V428_10415 PF02674 Colicin V production protein V428_10420 PF00156 Phosphoribosyl transferase domain V428_10425 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) V428_10430 PF00005 ABC transporter V428_10435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_10435 PF00005 ABC transporter V428_10445 PF00528 Binding-protein-dependent transport system inner membrane component V428_10445 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_10450 PF00528 Binding-protein-dependent transport system inner membrane component V428_10455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_10460 PF00158 Sigma-54 interaction domain V428_10460 PF02954 Bacterial regulatory protein, Fis family V428_10465 PF04012 PspA/IM30 family V428_10470 PF06667 Phage shock protein B V428_10480 PF04317 YcjX-like family, DUF463 V428_10485 PF05128 Domain of unknown function (DUF697) V428_10490 PF00351 Biopterin-dependent aromatic amino acid hydroxylase V428_10495 PF01329 Pterin 4 alpha carbinolamine dehydratase V428_10500 PF01329 Pterin 4 alpha carbinolamine dehydratase V428_10505 PF00158 Sigma-54 interaction domain V428_10505 PF18024 Helix-turn-helix domain V428_10510 PF13689 YfiR/HmsC-like V428_10515 PF17152 Periplasmic sensor domain V428_10515 PF00990 Diguanylate cyclase, GGDEF domain V428_10520 PF00691 OmpA family V428_10525 PF03741 Integral membrane protein TerC family V428_10535 PF08891 YfcL protein V428_10540 PF00501 AMP-binding enzyme V428_10545 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region V428_10545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V428_10550 PF04172 LrgB-like family V428_10555 PF03788 LrgA family V428_10570 PF08411 Exonuclease C-terminal V428_10570 PF00929 Exonuclease V428_10575 PF11762 L-arabinose isomerase C-terminal domain V428_10575 PF02610 L-arabinose isomerase V428_10580 PF00596 Class II Aldolase and Adducin N-terminal domain V428_10585 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_10590 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_10595 PF00005 ABC transporter V428_10600 PF02653 Branched-chain amino acid transport system / permease component V428_10605 PF02311 AraC-like ligand binding domain V428_10605 PF12833 Helix-turn-helix domain V428_10610 PF03466 LysR substrate binding domain V428_10610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10615 PF05726 Pirin C-terminal cupin domain V428_10615 PF02678 Pirin V428_10620 PF00444 Ribosomal protein L36 V428_10625 PF01197 Ribosomal protein L31 V428_10640 PF01863 Protein of unknown function DUF45 V428_10655 PF03606 C4-dicarboxylate anaerobic carrier V428_10665 PF05430 S-adenosyl-L-methionine-dependent methyltransferase V428_10665 PF01266 FAD dependent oxidoreductase V428_10670 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_10670 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_10685 PF00285 Citrate synthase, C-terminal domain V428_10695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V428_10700 PF00890 FAD binding domain V428_10700 PF02910 Fumarate reductase flavoprotein C-term V428_10705 PF13085 2Fe-2S iron-sulfur cluster binding domain V428_10710 PF16078 2-oxoglutarate dehydrogenase N-terminus V428_10710 PF00676 Dehydrogenase E1 component V428_10710 PF16870 2-oxoglutarate dehydrogenase C-terminal V428_10710 PF02779 Transketolase, pyrimidine binding domain V428_10715 PF00364 Biotin-requiring enzyme V428_10715 PF02817 e3 binding domain V428_10715 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_10720 PF00549 CoA-ligase V428_10720 PF08442 ATP-grasp domain V428_10725 PF00549 CoA-ligase V428_10725 PF02629 CoA binding domain V428_10735 PF03692 Putative zinc- or iron-chelating domain V428_10740 PF01266 FAD dependent oxidoreductase V428_10745 PF00528 Binding-protein-dependent transport system inner membrane component V428_10750 PF00005 ABC transporter V428_10760 PF07702 UTRA domain V428_10760 PF00392 Bacterial regulatory proteins, gntR family V428_10765 PF00266 Aminotransferase class-V V428_10770 PF00202 Aminotransferase class-III V428_10780 PF01228 Glycine radical V428_10780 PF02901 Pyruvate formate lyase-like V428_10785 PF01226 Formate/nitrite transporter V428_10790 PF18381 YcaO cyclodehydratase C-terminal domain V428_10790 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding V428_10795 PF00893 Small Multidrug Resistance protein V428_10800 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_10800 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_10805 PF00675 Insulinase (Peptidase family M16) V428_10805 PF05193 Peptidase M16 inactive domain V428_10810 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_10820 PF13460 NAD(P)H-binding V428_10825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10825 PF03466 LysR substrate binding domain V428_10830 PF00106 short chain dehydrogenase V428_10835 PF12833 Helix-turn-helix domain V428_10840 PF07715 TonB-dependent Receptor Plug Domain V428_10840 PF00593 TonB dependent receptor V428_10850 PF03466 LysR substrate binding domain V428_10850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10855 PF08267 Cobalamin-independent synthase, N-terminal domain V428_10855 PF01717 Cobalamin-independent synthase, Catalytic domain V428_10865 PF00571 CBS domain V428_10865 PF00478 IMP dehydrogenase / GMP reductase domain V428_10870 PF07969 Amidohydrolase family V428_10880 PF01266 FAD dependent oxidoreductase V428_10885 PF04244 Deoxyribodipyrimidine photo-lyase-related protein V428_10890 PF01212 Beta-eliminating lyase V428_10895 PF00768 D-alanyl-D-alanine carboxypeptidase V428_10900 PF00293 NUDIX domain V428_10910 PF08534 Redoxin V428_10915 PF01578 Cytochrome C assembly protein V428_10915 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal V428_10920 PF03916 Polysulphide reductase, NrfD V428_10925 PF13247 4Fe-4S dicluster domain V428_10925 PF00037 4Fe-4S binding domain V428_10930 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V428_10930 PF13435 Cytochrome c554 and c-prime V428_10935 PF02335 Cytochrome c552 V428_10950 PF02754 Cysteine-rich domain V428_10950 PF13183 4Fe-4S dicluster domain V428_10955 PF00890 FAD binding domain V428_10960 PF01266 FAD dependent oxidoreductase V428_10960 PF04324 BFD-like [2Fe-2S] binding domain V428_10965 PF02810 SEC-C motif V428_10970 PF00672 HAMP domain V428_10970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_10970 PF17200 Single Cache domain 2 V428_10975 PF00480 ROK family V428_10975 PF01047 MarR family V428_10980 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V428_10980 PF17203 Single cache domain 3 V428_10980 PF00989 PAS fold V428_10980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_10985 PF00072 Response regulator receiver domain V428_10985 PF08279 HTH domain V428_10985 PF12431 Transcriptional regulator V428_10990 PF01970 Tripartite tricarboxylate transporter TctA family V428_11005 PF01464 Transglycosylase SLT domain V428_11005 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_11010 PF06826 Predicted Permease Membrane Region V428_11010 PF02080 TrkA-C domain V428_11020 PF12344 Ultra-violet resistance protein B V428_11020 PF17757 UvrB interaction domain V428_11020 PF02151 UvrB/uvrC motif V428_11020 PF00271 Helicase conserved C-terminal domain V428_11020 PF04851 Type III restriction enzyme, res subunit V428_11030 PF09335 SNARE associated Golgi protein V428_11035 PF02600 Disulfide bond formation protein DsbB V428_11040 PF06450 Bacterial Na+/H+ antiporter B (NhaB) V428_11045 PF07840 FadR C-terminal domain V428_11045 PF00392 Bacterial regulatory proteins, gntR family V428_11050 PF04293 SpoVR like protein V428_11055 PF04285 Protein of unknown function (DUF444) V428_11060 PF08298 PrkA AAA domain V428_11060 PF06798 PrkA serine protein kinase C-terminal domain V428_11065 PF09382 RQC domain V428_11065 PF16124 RecQ zinc-binding V428_11065 PF00570 HRDC domain V428_11065 PF00271 Helicase conserved C-terminal domain V428_11065 PF00270 DEAD/DEAH box helicase V428_11070 PF00375 Sodium:dicarboxylate symporter family V428_11075 PF03222 Tryptophan/tyrosine permease family V428_11080 PF00293 NUDIX domain V428_11085 PF00425 chorismate binding enzyme V428_11085 PF04715 Anthranilate synthase component I, N terminal region V428_11110 PF00343 Carbohydrate phosphorylase V428_11115 PF00939 Sodium:sulfate symporter transmembrane region V428_11120 PF00085 Thioredoxin V428_11125 PF01627 Hpt domain V428_11125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V428_11125 PF00512 His Kinase A (phospho-acceptor) domain V428_11125 PF00672 HAMP domain V428_11125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_11125 PF00072 Response regulator receiver domain V428_11130 PF00005 ABC transporter V428_11130 PF00664 ABC transporter transmembrane region V428_11140 PF00005 ABC transporter V428_11140 PF00664 ABC transporter transmembrane region V428_11160 PF01575 MaoC like domain V428_11165 PF00561 alpha/beta hydrolase fold V428_11165 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus V428_11195 PF08543 Phosphomethylpyrimidine kinase V428_11200 PF03992 Antibiotic biosynthesis monooxygenase V428_11205 PF00465 Iron-containing alcohol dehydrogenase V428_11210 PF00583 Acetyltransferase (GNAT) family V428_11220 PF01928 CYTH domain V428_11230 PF02694 Uncharacterised BCR, YnfA/UPF0060 family V428_11240 PF13673 Acetyltransferase (GNAT) domain V428_11245 PF00270 DEAD/DEAH box helicase V428_11245 PF00271 Helicase conserved C-terminal domain V428_11250 PF00255 Glutathione peroxidase V428_11260 PF07478 D-ala D-ala ligase C-terminus V428_11260 PF01820 D-ala D-ala ligase N-terminus V428_11265 PF18029 Glyoxalase-like domain V428_11265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_11280 PF01925 Sulfite exporter TauE/SafE V428_11285 PF03466 LysR substrate binding domain V428_11285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_11295 PF14525 AraC-binding-like domain V428_11295 PF12833 Helix-turn-helix domain V428_11300 PF11398 Protein of unknown function (DUF2813) V428_11310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_11310 PF00128 Alpha amylase, catalytic domain V428_11350 PF02789 Cytosol aminopeptidase family, N-terminal domain V428_11350 PF00883 Cytosol aminopeptidase family, catalytic domain V428_11355 PF13419 Haloacid dehalogenase-like hydrolase V428_11360 PF07687 Peptidase dimerisation domain V428_11360 PF01546 Peptidase family M20/M25/M40 V428_11365 PF00365 Phosphofructokinase V428_11370 PF00121 Triosephosphate isomerase V428_11375 PF02698 DUF218 domain V428_11385 PF03882 MukF winged-helix domain V428_11385 PF17192 MukF middle domain V428_11385 PF17193 MukF C-terminal domain V428_11390 PF04288 MukE-like family V428_11395 PF16330 MukB hinge domain V428_11395 PF04310 MukB N-terminal V428_11400 PF05036 Sporulation related domain V428_11400 PF03330 Lytic transglycolase V428_11415 PF01327 Polypeptide deformylase V428_11430 PF02567 Phenazine biosynthesis-like protein V428_11450 PF08274 PhnA Zinc-Ribbon V428_11450 PF03831 PhnA domain V428_11465 PF00704 Glycosyl hydrolases family 18 V428_11465 PF08329 Chitinase A, N-terminal domain V428_11480 PF00300 Histidine phosphatase superfamily (branch 1) V428_11485 PF00990 Diguanylate cyclase, GGDEF domain V428_11485 PF08448 PAS fold V428_11495 PF01713 Smr domain V428_11500 PF05175 Methyltransferase small domain V428_11505 PF01264 Chorismate synthase V428_11515 PF00271 Helicase conserved C-terminal domain V428_11515 PF00270 DEAD/DEAH box helicase V428_11530 PF03222 Tryptophan/tyrosine permease family V428_11535 PF00356 Bacterial regulatory proteins, lacI family V428_11535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_11540 PF00381 PTS HPr component phosphorylation site V428_11540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_11545 PF00294 pfkB family carbohydrate kinase V428_11550 PF02378 Phosphotransferase system, EIIC V428_11550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_11555 PF06560 Glucose-6-phosphate isomerase (GPI) V428_11560 PF00356 Bacterial regulatory proteins, lacI family V428_11560 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_11575 PF03610 PTS system fructose IIA component V428_11575 PF03830 PTS system sorbose subfamily IIB component V428_11580 PF03609 PTS system sorbose-specific iic component V428_11585 PF03613 PTS system mannose/fructose/sorbose family IID component V428_11595 PF06945 Protein of unknown function (DUF1289) V428_11600 PF03562 MltA specific insert domain V428_11600 PF06725 3D domain V428_11605 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_11610 PF00268 Ribonucleotide reductase, small chain V428_11615 PF00317 Ribonucleotide reductase, all-alpha domain V428_11615 PF02867 Ribonucleotide reductase, barrel domain V428_11615 PF03477 ATP cone domain V428_11620 PF13419 Haloacid dehalogenase-like hydrolase V428_11630 PF03989 DNA gyrase C-terminal domain, beta-propeller V428_11630 PF00521 DNA gyrase/topoisomerase IV, subunit A V428_11640 PF04055 Radical SAM superfamily V428_11650 PF03129 Anticodon binding domain V428_11650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V428_11650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_11650 PF02824 TGS domain V428_11655 PF00707 Translation initiation factor IF-3, C-terminal domain V428_11655 PF05198 Translation initiation factor IF-3, N-terminal domain V428_11660 PF01632 Ribosomal protein L35 V428_11665 PF00453 Ribosomal protein L20 V428_11670 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain V428_11670 PF01409 tRNA synthetases class II core domain (F) V428_11675 PF03483 B3/4 domain V428_11675 PF03484 tRNA synthetase B5 domain V428_11675 PF01588 Putative tRNA binding domain V428_11675 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain V428_11675 PF03147 Ferredoxin-fold anticodon binding domain V428_11680 PF00216 Bacterial DNA-binding protein V428_11685 PF00072 Response regulator receiver domain V428_11685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_11685 PF00512 His Kinase A (phospho-acceptor) domain V428_11685 PF09456 RcsC Alpha-Beta-Loop (ABL) V428_11700 PF02146 Sir2 family V428_11715 PF00356 Bacterial regulatory proteins, lacI family V428_11720 PF00294 pfkB family carbohydrate kinase V428_11725 PF13407 Periplasmic binding protein domain V428_11730 PF02653 Branched-chain amino acid transport system / permease component V428_11735 PF00005 ABC transporter V428_11740 PF05025 RbsD / FucU transport protein family V428_11745 PF02798 Glutathione S-transferase, N-terminal domain V428_11745 PF14497 Glutathione S-transferase, C-terminal domain V428_11760 PF01171 PP-loop family V428_11765 PF00582 Universal stress protein family V428_11770 PF13545 Crp-like helix-turn-helix domain V428_11770 PF00027 Cyclic nucleotide-binding domain V428_11785 PF00403 Heavy-metal-associated domain V428_11795 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP V428_11795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_11810 PF00115 Cytochrome C and Quinol oxidase polypeptide I V428_11820 PF13185 GAF domain V428_11825 PF17516 ProQ C-terminal domain V428_11825 PF04352 ProQ/FINO family V428_11830 PF11818 C-terminal domain of tail specific protease (DUF3340) V428_11830 PF03572 Peptidase family S41 V428_11830 PF00595 PDZ domain V428_11830 PF17804 Tail specific protease N-terminal domain V428_11835 PF17432 Domain of unknown function (DUF3458_C) ARM repeats V428_11835 PF01433 Peptidase family M1 domain V428_11835 PF11940 Domain of unknown function (DUF3458) Ig-like fold V428_11845 PF05088 Bacterial NAD-glutamate dehydrogenase V428_11850 PF01180 Dihydroorotate dehydrogenase V428_11855 PF07126 Cell-division protein ZapC V428_11860 PF10672 S-adenosylmethionine-dependent methyltransferase V428_11860 PF02926 THUMP domain V428_11860 PF01170 Putative RNA methylase family UPF0020 V428_11870 PF12848 ABC transporter V428_11870 PF16326 ABC transporter C-terminal domain V428_11870 PF00005 ABC transporter V428_11880 PF04957 Ribosome modulation factor V428_11885 PF07977 FabA-like domain V428_11890 PF13654 AAA domain V428_11890 PF05362 Lon protease (S16) C-terminal proteolytic domain V428_11900 PF07130 YebG protein V428_11910 PF00106 short chain dehydrogenase V428_11935 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain V428_11935 PF06974 Protein of unknown function (DUF1298) V428_11950 PF03972 MmgE/PrpD family V428_11955 PF00285 Citrate synthase, C-terminal domain V428_11970 PF04403 Paraquat-inducible protein A V428_11975 PF02470 MlaD protein V428_11980 PF01189 16S rRNA methyltransferase RsmB/F V428_11980 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF V428_11980 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF V428_11990 PF00589 Phage integrase family V428_11995 PF01026 TatD related DNase V428_12000 PF09115 DNA polymerase III, delta subunit, C terminal V428_12005 PF02223 Thymidylate kinase V428_12010 PF02618 YceG-like family V428_12015 PF01063 Amino-transferase class IV V428_12020 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_12020 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_12025 PF00550 Phosphopantetheine attachment site V428_12035 PF00698 Acyl transferase domain V428_12040 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V428_12040 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V428_12045 PF02504 Fatty acid synthesis protein V428_12050 PF01783 Ribosomal L32p protein family V428_12055 PF02620 Large ribosomal RNA subunit accumulation protein YceD V428_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12065 PF03466 LysR substrate binding domain V428_12070 PF07690 Major Facilitator Superfamily V428_12075 PF02545 Maf-like protein V428_12085 PF00849 RNA pseudouridylate synthase V428_12085 PF01479 S4 domain V428_12090 PF12111 Polyribonucleotide phosphorylase C terminal V428_12090 PF00575 S1 RNA binding domain V428_12090 PF10150 Ribonuclease E/G family V428_12095 PF01384 Phosphate transporter family V428_12100 PF00692 dUTPase V428_12105 PF00485 Phosphoribulokinase / Uridine kinase family V428_12110 PF10609 NUBPL iron-transfer P-loop NTPase V428_12115 PF08264 Anticodon-binding domain of tRNA V428_12115 PF01588 Putative tRNA binding domain V428_12115 PF09334 tRNA synthetases class I (M) V428_12120 PF02798 Glutathione S-transferase, N-terminal domain V428_12120 PF00043 Glutathione S-transferase, C-terminal domain V428_12125 PF00708 Acylphosphatase V428_12130 PF12729 Four helix bundle sensory module for signal transduction V428_12130 PF00672 HAMP domain V428_12130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_12135 PF10672 S-adenosylmethionine-dependent methyltransferase V428_12135 PF17785 PUA-like domain V428_12160 PF00586 AIR synthase related protein, N-terminal domain V428_12160 PF02769 AIR synthase related protein, C-terminal domain V428_12170 PF00753 Metallo-beta-lactamase superfamily V428_12175 PF00072 Response regulator receiver domain V428_12180 PF00512 His Kinase A (phospho-acceptor) domain V428_12180 PF00072 Response regulator receiver domain V428_12180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_12180 PF00672 HAMP domain V428_12180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V428_12180 PF01627 Hpt domain V428_12195 PF04408 Helicase associated domain (HA2) V428_12195 PF11898 Domain of unknown function (DUF3418) V428_12195 PF00270 DEAD/DEAH box helicase V428_12195 PF00271 Helicase conserved C-terminal domain V428_12195 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold V428_12210 PF00072 Response regulator receiver domain V428_12210 PF00196 Bacterial regulatory proteins, luxR family V428_12225 PF02575 YbaB/EbfC DNA-binding family V428_12230 PF12170 DNA polymerase III tau subunit V interacting with alpha V428_12230 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding V428_12230 PF12169 DNA polymerase III subunits gamma and tau domain III V428_12235 PF00156 Phosphoribosyl transferase domain V428_12240 PF04304 Protein of unknown function (DUF454) V428_12245 PF01207 Dihydrouridine synthase (Dus) V428_12255 PF00239 Resolvase, N terminal domain V428_12255 PF07508 Recombinase V428_12255 PF13408 Recombinase zinc beta ribbon domain V428_12265 PF02796 Helix-turn-helix domain of resolvase V428_12265 PF00239 Resolvase, N terminal domain V428_12380 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_12385 PF01612 3'-5' exonuclease V428_12385 PF00570 HRDC domain V428_12390 PF00501 AMP-binding enzyme V428_12390 PF13193 AMP-binding enzyme C-terminal domain V428_12395 PF12697 Alpha/beta hydrolase family V428_12395 PF08241 Methyltransferase domain V428_12405 PF00814 Glycoprotease family V428_12410 PF04851 Type III restriction enzyme, res subunit V428_12410 PF13307 Helicase C-terminal domain V428_12420 PF08029 HisG, C-terminal domain V428_12420 PF01634 ATP phosphoribosyltransferase V428_12425 PF00815 Histidinol dehydrogenase V428_12430 PF00155 Aminotransferase class I and II V428_12435 PF00475 Imidazoleglycerol-phosphate dehydratase V428_12435 PF08645 Polynucleotide kinase 3 phosphatase V428_12440 PF00117 Glutamine amidotransferase class-I V428_12445 PF00977 Histidine biosynthesis protein V428_12450 PF00072 Response regulator receiver domain V428_12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_12460 PF00512 His Kinase A (phospho-acceptor) domain V428_12460 PF01627 Hpt domain V428_12460 PF00072 Response regulator receiver domain V428_12465 PF00977 Histidine biosynthesis protein V428_12470 PF01502 Phosphoribosyl-AMP cyclohydrolase V428_12470 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase V428_12475 PF13193 AMP-binding enzyme C-terminal domain V428_12475 PF00501 AMP-binding enzyme V428_12480 PF03606 C4-dicarboxylate anaerobic carrier V428_12490 PF05433 Glycine zipper 2TM domain V428_12500 PF01799 [2Fe-2S] binding domain V428_12500 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_12505 PF03450 CO dehydrogenase flavoprotein C-terminal domain V428_12505 PF00941 FAD binding domain in molybdopterin dehydrogenase V428_12510 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain V428_12510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase V428_12515 PF00860 Permease family V428_12520 PF01979 Amidohydrolase family V428_12525 PF00860 Permease family V428_12530 PF01799 [2Fe-2S] binding domain V428_12530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase V428_12530 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain V428_12535 PF00941 FAD binding domain in molybdopterin dehydrogenase V428_12540 PF01979 Amidohydrolase family V428_12545 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_12545 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_12555 PF12804 MobA-like NTP transferase domain V428_12570 PF13478 XdhC Rossmann domain V428_12570 PF02625 XdhC and CoxI family V428_12575 PF00892 EamA-like transporter family V428_12585 PF00696 Amino acid kinase family V428_12590 PF01979 Amidohydrolase family V428_12595 PF01546 Peptidase family M20/M25/M40 V428_12595 PF07687 Peptidase dimerisation domain V428_12600 PF00291 Pyridoxal-phosphate dependent enzyme V428_12605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_12605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_12615 PF10123 Mu-like prophage I protein V428_12630 PF06074 Protein of unknown function (DUF935) V428_12640 PF07152 YaeQ protein V428_12650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V428_12650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V428_12650 PF00378 Enoyl-CoA hydratase/isomerase V428_12655 PF00108 Thiolase, N-terminal domain V428_12655 PF02803 Thiolase, C-terminal domain V428_12660 PF17863 AAA lid domain V428_12660 PF07726 ATPase family associated with various cellular activities (AAA) V428_12665 PF01882 Protein of unknown function DUF58 V428_12690 PF04542 Sigma-70 region 2 V428_12690 PF08281 Sigma-70, region 4 V428_12700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V428_12710 PF08668 HDOD domain V428_12710 PF00563 EAL domain V428_12715 PF00108 Thiolase, N-terminal domain V428_12715 PF02803 Thiolase, C-terminal domain V428_12720 PF09278 MerR, DNA binding V428_12720 PF00376 MerR family regulatory protein V428_12725 PF00375 Sodium:dicarboxylate symporter family V428_12730 PF06865 Pyrimidine/purine nucleoside phosphorylase V428_12735 PF03315 Serine dehydratase beta chain V428_12735 PF03313 Serine dehydratase alpha chain V428_12740 PF03315 Serine dehydratase beta chain V428_12740 PF03313 Serine dehydratase alpha chain V428_12745 PF13406 Transglycosylase SLT domain V428_12750 PF05166 YcgL domain V428_12755 PF05209 Septum formation inhibitor MinC, N-terminal domain V428_12755 PF03775 Septum formation inhibitor MinC, C-terminal domain V428_12760 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V428_12765 PF03776 Septum formation topological specificity factor MinE V428_12770 PF04269 Protein of unknown function, DUF440 V428_12775 PF00912 Transglycosylase V428_12780 PF04269 Protein of unknown function, DUF440 V428_12790 PF17783 CvfB-like winged helix domain V428_12790 PF13509 S1 domain V428_12815 PF02525 Flavodoxin-like fold V428_12820 PF00892 EamA-like transporter family V428_12825 PF02222 ATP-grasp domain V428_12825 PF01370 NAD dependent epimerase/dehydratase family V428_12830 PF13419 Haloacid dehalogenase-like hydrolase V428_12840 PF00677 Lumazine binding domain V428_12845 PF06786 Uncharacterised protein family (UPF0253) V428_12850 PF01554 MatE V428_12870 PF03104 DNA polymerase family B, exonuclease domain V428_12870 PF00136 DNA polymerase family B V428_12880 PF00990 Diguanylate cyclase, GGDEF domain V428_12880 PF17151 Periplasmic sensor domain V428_12895 PF03279 Bacterial lipid A biosynthesis acyltransferase V428_12900 PF03279 Bacterial lipid A biosynthesis acyltransferase V428_12910 PF03466 LysR substrate binding domain V428_12910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_12915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_12920 PF01261 Xylose isomerase-like TIM barrel V428_12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12925 PF03466 LysR substrate binding domain V428_12935 PF01966 HD domain V428_12950 PF13188 PAS domain V428_12950 PF00563 EAL domain V428_12950 PF03707 Bacterial signalling protein N terminal repeat V428_12950 PF00990 Diguanylate cyclase, GGDEF domain V428_12955 PF00232 Glycosyl hydrolase family 1 V428_12960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12960 PF03466 LysR substrate binding domain V428_12965 PF07694 5TMR of 5TMR-LYT V428_12965 PF00990 Diguanylate cyclase, GGDEF domain V428_12970 PF00248 Aldo/keto reductase family V428_12980 PF00248 Aldo/keto reductase family V428_12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12985 PF03466 LysR substrate binding domain V428_12995 PF00326 Prolyl oligopeptidase family V428_12995 PF07676 WD40-like Beta Propeller Repeat V428_12995 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region V428_13000 PF12146 Serine aminopeptidase, S33 V428_13005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_13005 PF03466 LysR substrate binding domain V428_13015 PF02796 Helix-turn-helix domain of resolvase V428_13015 PF00239 Resolvase, N terminal domain V428_13035 PF04002 RadC-like JAB domain V428_13060 PF00563 EAL domain V428_13060 PF00990 Diguanylate cyclase, GGDEF domain V428_13060 PF08448 PAS fold V428_13085 PF01925 Sulfite exporter TauE/SafE V428_13090 PF13520 Amino acid permease V428_13100 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase V428_13100 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V428_13105 PF00378 Enoyl-CoA hydratase/isomerase V428_13110 PF00378 Enoyl-CoA hydratase/isomerase V428_13115 PF02770 Acyl-CoA dehydrogenase, middle domain V428_13115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_13115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_13120 PF00171 Aldehyde dehydrogenase family V428_13125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_13125 PF02770 Acyl-CoA dehydrogenase, middle domain V428_13125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_13130 PF01039 Carboxyl transferase domain V428_13135 PF00378 Enoyl-CoA hydratase/isomerase V428_13140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_13140 PF00364 Biotin-requiring enzyme V428_13140 PF00289 Biotin carboxylase, N-terminal domain V428_13140 PF02785 Biotin carboxylase C-terminal domain V428_13145 PF00682 HMGL-like V428_13150 PF09278 MerR, DNA binding V428_13150 PF00376 MerR family regulatory protein V428_13170 PF01184 GPR1/FUN34/yaaH family V428_13175 PF06167 Glucose-regulated metallo-peptidase M90 V428_13185 PF01235 Sodium:alanine symporter family V428_13230 PF00378 Enoyl-CoA hydratase/isomerase V428_13245 PF04341 Protein of unknown function, DUF485 V428_13250 PF00474 Sodium:solute symporter family V428_13255 PF00005 ABC transporter V428_13255 PF12848 ABC transporter V428_13260 PF13145 PPIC-type PPIASE domain V428_13265 PF00216 Bacterial DNA-binding protein V428_13270 PF02190 ATP-dependent protease La (LON) substrate-binding domain V428_13270 PF05362 Lon protease (S16) C-terminal proteolytic domain V428_13270 PF00004 ATPase family associated with various cellular activities (AAA) V428_13275 PF06689 ClpX C4-type zinc finger V428_13275 PF10431 C-terminal, D2-small domain, of ClpB protein V428_13275 PF07724 AAA domain (Cdc48 subfamily) V428_13280 PF00574 Clp protease V428_13285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_13285 PF05698 Bacterial trigger factor protein (TF) C-terminus V428_13285 PF05697 Bacterial trigger factor protein (TF) V428_13300 PF02687 FtsX-like permease family V428_13300 PF12704 MacB-like periplasmic core domain V428_13305 PF00005 ABC transporter V428_13310 PF02687 FtsX-like permease family V428_13310 PF12704 MacB-like periplasmic core domain V428_13320 PF03461 TRCF domain V428_13320 PF00270 DEAD/DEAH box helicase V428_13320 PF02559 CarD-like/TRCF domain V428_13320 PF00271 Helicase conserved C-terminal domain V428_13320 PF17757 UvrB interaction domain V428_13325 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain V428_13330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_13335 PF00892 EamA-like transporter family V428_13345 PF00300 Histidine phosphatase superfamily (branch 1) V428_13350 PF05193 Peptidase M16 inactive domain V428_13350 PF00675 Insulinase (Peptidase family M16) V428_13355 PF05724 Thiopurine S-methyltransferase (TPMT) V428_13370 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_13370 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V428_13370 PF02805 Metal binding domain of Ada V428_13370 PF12833 Helix-turn-helix domain V428_13445 PF13356 Arm DNA-binding domain V428_13445 PF00589 Phage integrase family V428_13450 PF02540 NAD synthase V428_13450 PF00958 GMP synthase C terminal domain V428_13450 PF00117 Glutamine amidotransferase class-I V428_13455 PF00571 CBS domain V428_13455 PF00478 IMP dehydrogenase / GMP reductase domain V428_13460 PF02705 K+ potassium transporter V428_13470 PF01618 MotA/TolQ/ExbB proton channel family V428_13475 PF02472 Biopolymer transport protein ExbD/TolR V428_13480 PF00892 EamA-like transporter family V428_13485 PF02601 Exonuclease VII, large subunit V428_13485 PF13742 OB-fold nucleic acid binding domain V428_13490 PF04055 Radical SAM superfamily V428_13495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_13495 PF00672 HAMP domain V428_13500 PF00793 DAHP synthetase I family V428_13505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V428_13510 PF00266 Aminotransferase class-V V428_13515 PF01012 Electron transfer flavoprotein domain V428_13515 PF00766 Electron transfer flavoprotein FAD-binding domain V428_13525 PF01012 Electron transfer flavoprotein domain V428_13535 PF01544 CorA-like Mg2+ transporter protein V428_13540 PF11143 Protein of unknown function (DUF2919) V428_13555 PF00593 TonB dependent receptor V428_13555 PF07715 TonB-dependent Receptor Plug Domain V428_13560 PF01032 FecCD transport family V428_13565 PF01032 FecCD transport family V428_13570 PF00005 ABC transporter V428_13575 PF17837 4'-phosphopantetheinyl transferase N-terminal domain V428_13575 PF01648 4'-phosphopantetheinyl transferase superfamily V428_13580 PF01497 Periplasmic binding protein V428_13585 PF13193 AMP-binding enzyme C-terminal domain V428_13585 PF00550 Phosphopantetheine attachment site V428_13585 PF00668 Condensation domain V428_13585 PF00975 Thioesterase domain V428_13585 PF00501 AMP-binding enzyme V428_13590 PF00668 Condensation domain V428_13590 PF13193 AMP-binding enzyme C-terminal domain V428_13590 PF07993 Male sterility protein V428_13590 PF00501 AMP-binding enzyme V428_13590 PF00550 Phosphopantetheine attachment site V428_13600 PF00668 Condensation domain V428_13600 PF00501 AMP-binding enzyme V428_13600 PF00975 Thioesterase domain V428_13600 PF13193 AMP-binding enzyme C-terminal domain V428_13600 PF00550 Phosphopantetheine attachment site V428_13605 PF00550 Phosphopantetheine attachment site V428_13605 PF00857 Isochorismatase family V428_13610 PF00501 AMP-binding enzyme V428_13610 PF13193 AMP-binding enzyme C-terminal domain V428_13615 PF00425 chorismate binding enzyme V428_13620 PF07273 Protein of unknown function (DUF1439) V428_13630 PF00483 Nucleotidyl transferase V428_13650 PF00294 pfkB family carbohydrate kinase V428_13660 PF00762 Ferrochelatase V428_13665 PF05191 Adenylate kinase, active site lid V428_13670 PF00183 Hsp90 protein V428_13670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_13675 PF13662 Toprim domain V428_13675 PF02132 RecR protein V428_13680 PF02634 FdhD/NarQ family V428_13685 PF00158 Sigma-54 interaction domain V428_13685 PF02954 Bacterial regulatory protein, Fis family V428_13685 PF01590 GAF domain V428_13695 PF01568 Molydopterin dinucleotide binding domain V428_13695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_13695 PF00384 Molybdopterin oxidoreductase V428_13700 PF00384 Molybdopterin oxidoreductase V428_13700 PF01568 Molydopterin dinucleotide binding domain V428_13700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_13705 PF12800 4Fe-4S binding domain V428_13705 PF13247 4Fe-4S dicluster domain V428_13715 PF02705 K+ potassium transporter V428_13720 PF00037 4Fe-4S binding domain V428_13720 PF12798 4Fe-4S binding domain V428_13725 PF00361 Proton-conducting membrane transporter V428_13730 PF00146 NADH dehydrogenase V428_13735 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit V428_13735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit V428_13735 PF00374 Nickel-dependent hydrogenase V428_13740 PF12838 4Fe-4S dicluster domain V428_13745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_13750 PF07450 Formate hydrogenlyase maturation protein HycH V428_13755 PF01750 Hydrogenase maturation protease V428_13765 PF12390 Selenocysteine synthase N terminal V428_13765 PF03841 L-seryl-tRNA selenium transferase V428_13770 PF09107 Elongation factor SelB, winged helix V428_13770 PF09105 Elongation factor SelB, winged helix V428_13770 PF09106 Elongation factor SelB, winged helix V428_13770 PF03144 Elongation factor Tu domain 2 V428_13770 PF00009 Elongation factor Tu GTP binding domain V428_13775 PF01300 Telomere recombination V428_13775 PF17788 HypF Kae1-like domain V428_13775 PF07503 HypF finger V428_13775 PF00708 Acylphosphatase V428_13780 PF01455 HupF/HypC family V428_13785 PF01924 Hydrogenase formation hypA family V428_13790 PF02769 AIR synthase related protein, C-terminal domain V428_13790 PF00586 AIR synthase related protein, N-terminal domain V428_13795 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA V428_13805 PF02492 CobW/HypB/UreG, nucleotide-binding domain V428_13810 PF00005 ABC transporter V428_13810 PF08402 TOBE domain V428_13815 PF00005 ABC transporter V428_13815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_13820 PF00528 Binding-protein-dependent transport system inner membrane component V428_13820 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_13825 PF00528 Binding-protein-dependent transport system inner membrane component V428_13830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_13835 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE V428_13840 PF01750 Hydrogenase maturation protease V428_13845 PF00374 Nickel-dependent hydrogenase V428_13850 PF03916 Polysulphide reductase, NrfD V428_13855 PF13247 4Fe-4S dicluster domain V428_13860 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal V428_13860 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_13865 PF00072 Response regulator receiver domain V428_13875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_13875 PF02895 Signal transducing histidine kinase, homodimeric domain V428_13875 PF01584 CheW-like domain V428_13875 PF01627 Hpt domain V428_13875 PF09078 CheY binding V428_13880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_13880 PF17202 Single cache domain 3 V428_13880 PF00672 HAMP domain V428_13885 PF01584 CheW-like domain V428_13890 PF03705 CheR methyltransferase, all-alpha domain V428_13890 PF01739 CheR methyltransferase, SAM binding domain V428_13895 PF01339 CheB methylesterase V428_13895 PF00072 Response regulator receiver domain V428_13900 PF00990 Diguanylate cyclase, GGDEF domain V428_13900 PF00563 EAL domain V428_13900 PF03707 Bacterial signalling protein N terminal repeat V428_13905 PF12729 Four helix bundle sensory module for signal transduction V428_13905 PF00672 HAMP domain V428_13905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_13910 PF01168 Alanine racemase, N-terminal domain V428_13910 PF00842 Alanine racemase, C-terminal domain V428_13925 PF13333 Integrase core domain V428_13925 PF13276 HTH-like domain V428_13925 PF00665 Integrase core domain V428_13935 PF01527 Transposase V428_13945 PF01527 Transposase V428_13995 PF01740 STAS domain V428_13995 PF00916 Sulfate permease family V428_14010 PF03350 Uncharacterized protein family, UPF0114 V428_14025 PF03239 Iron permease FTR1 family V428_14030 PF01593 Flavin containing amine oxidoreductase V428_14045 PF07690 Major Facilitator Superfamily V428_14055 PF00005 ABC transporter V428_14070 PF01565 FAD binding domain V428_14070 PF02913 FAD linked oxidases, C-terminal domain V428_14075 PF02589 LUD domain V428_14080 PF02589 LUD domain V428_14080 PF11870 Domain of unknown function (DUF3390) V428_14080 PF13183 4Fe-4S dicluster domain V428_14085 PF02754 Cysteine-rich domain V428_14090 PF02652 L-lactate permease V428_14095 PF03466 LysR substrate binding domain V428_14095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_14105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_14110 PF00561 alpha/beta hydrolase fold V428_14135 PF01625 Peptide methionine sulfoxide reductase V428_14140 PF00583 Acetyltransferase (GNAT) family V428_14140 PF00696 Amino acid kinase family V428_14145 PF00696 Amino acid kinase family V428_14145 PF01842 ACT domain V428_14155 PF00884 Sulfatase V428_14160 PF17676 LD-carboxypeptidase C-terminal domain V428_14160 PF02016 LD-carboxypeptidase N-terminal domain V428_14165 PF01734 Patatin-like phospholipase V428_14170 PF17179 4Fe-4S dicluster domain V428_14175 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B V428_14175 PF00175 Oxidoreductase NAD-binding domain V428_14180 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_14180 PF13187 4Fe-4S dicluster domain V428_14180 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_14185 PF10414 Sirohaem synthase dimerisation region V428_14185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_14185 PF14824 Sirohaem biosynthesis protein central V428_14195 PF01906 Putative heavy-metal-binding V428_14215 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_14220 PF05728 Uncharacterised protein family (UPF0227) V428_14225 PF00860 Permease family V428_14230 PF01432 Peptidase family M3 V428_14230 PF08439 Oligopeptidase F V428_14235 PF01432 Peptidase family M3 V428_14235 PF08439 Oligopeptidase F V428_14240 PF05661 Protein of unknown function (DUF808) V428_14250 PF02355 Protein export membrane protein V428_14250 PF07549 SecD/SecF GG Motif V428_14255 PF07549 SecD/SecF GG Motif V428_14255 PF02355 Protein export membrane protein V428_14255 PF13721 SecD export protein N-terminal TM region V428_14290 PF01230 HIT domain V428_14295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_14295 PF00672 HAMP domain V428_14305 PF01979 Amidohydrolase family V428_14320 PF00375 Sodium:dicarboxylate symporter family V428_14330 PF00842 Alanine racemase, C-terminal domain V428_14330 PF01168 Alanine racemase, N-terminal domain V428_14335 PF03741 Integral membrane protein TerC family V428_14340 PF00005 ABC transporter V428_14340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_14350 PF00005 ABC transporter V428_14350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_14355 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_14355 PF00528 Binding-protein-dependent transport system inner membrane component V428_14360 PF00528 Binding-protein-dependent transport system inner membrane component V428_14365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_14370 PF01914 MarC family integral membrane protein V428_14380 PF00465 Iron-containing alcohol dehydrogenase V428_14380 PF00171 Aldehyde dehydrogenase family V428_14385 PF01966 HD domain V428_14390 PF06580 Histidine kinase V428_14390 PF07694 5TMR of 5TMR-LYT V428_14395 PF04397 LytTr DNA-binding domain V428_14395 PF00072 Response regulator receiver domain V428_14400 PF02554 Carbon starvation protein CstA V428_14405 PF11742 Protein of unknown function (DUF3302) V428_14410 PF00529 HlyD membrane-fusion protein of T1SS V428_14410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_14415 PF00271 Helicase conserved C-terminal domain V428_14415 PF04851 Type III restriction enzyme, res subunit V428_14420 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family V428_14425 PF00462 Glutaredoxin V428_14435 PF00155 Aminotransferase class I and II V428_14440 PF03606 C4-dicarboxylate anaerobic carrier V428_14445 PF07055 Enoyl reductase FAD binding domain V428_14445 PF12241 Trans-2-enoyl-CoA reductase catalytic region V428_14445 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V428_14450 PF13426 PAS domain V428_14450 PF08447 PAS fold V428_14450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_14460 PF00892 EamA-like transporter family V428_14465 PF02508 Rnf-Nqr subunit, membrane protein V428_14470 PF04060 Putative Fe-S cluster V428_14475 PF12838 4Fe-4S dicluster domain V428_14475 PF10531 SLBB domain V428_14475 PF13375 RnfC Barrel sandwich hybrid domain V428_14475 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V428_14480 PF03116 NQR2, RnfD, RnfE family V428_14485 PF04205 FMN-binding domain V428_14490 PF02508 Rnf-Nqr subunit, membrane protein V428_14495 PF10576 Iron-sulfur binding domain of endonuclease III V428_14495 PF00633 Helix-hairpin-helix motif V428_14495 PF00730 HhH-GPD superfamily base excision DNA repair protein V428_14500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_14505 PF18393 MotY N-terminal domain V428_14505 PF00691 OmpA family V428_14510 PF12729 Four helix bundle sensory module for signal transduction V428_14510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_14510 PF00672 HAMP domain V428_14515 PF00929 Exonuclease V428_14520 PF13726 Na+-H+ antiporter family V428_14520 PF03553 Na+/H+ antiporter family V428_14525 PF00271 Helicase conserved C-terminal domain V428_14525 PF03880 DbpA RNA binding domain V428_14525 PF00270 DEAD/DEAH box helicase V428_14530 PF03061 Thioesterase superfamily V428_14540 PF13183 4Fe-4S dicluster domain V428_14540 PF01565 FAD binding domain V428_14540 PF02913 FAD linked oxidases, C-terminal domain V428_14550 PF03741 Integral membrane protein TerC family V428_14550 PF03471 Transporter associated domain V428_14555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_14560 PF00962 Adenosine/AMP deaminase V428_14565 PF13344 Haloacid dehalogenase-like hydrolase V428_14570 PF00999 Sodium/hydrogen exchanger family V428_14570 PF02254 TrkA-N domain V428_14580 PF00733 Asparagine synthase V428_14580 PF13537 Glutamine amidotransferase domain V428_14590 PF13417 Glutathione S-transferase, N-terminal domain V428_14590 PF00043 Glutathione S-transferase, C-terminal domain V428_14595 PF14497 Glutathione S-transferase, C-terminal domain V428_14595 PF02798 Glutathione S-transferase, N-terminal domain V428_14605 PF04209 homogentisate 1,2-dioxygenase V428_14610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_14620 PF00849 RNA pseudouridylate synthase V428_14625 PF00563 EAL domain V428_14625 PF00990 Diguanylate cyclase, GGDEF domain V428_14625 PF13426 PAS domain V428_14630 PF08447 PAS fold V428_14630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_14640 PF03706 Lysylphosphatidylglycerol synthase TM region V428_14640 PF09924 Uncharacterised conserved protein (DUF2156) V428_14650 PF00884 Sulfatase V428_14650 PF08019 Phosphoethanolamine transferase EptA/EptB V428_14670 PF01027 Inhibitor of apoptosis-promoting Bax1 V428_14675 PF12805 FUSC-like inner membrane protein yccS V428_14680 PF04358 DsrC like protein V428_14685 PF05036 Sporulation related domain V428_14690 PF02875 Mur ligase family, glutamate ligase domain V428_14690 PF08245 Mur ligase middle domain V428_14695 PF01039 Carboxyl transferase domain V428_14695 PF17848 Acetyl-coA carboxylase zinc finger domain V428_14700 PF01416 tRNA pseudouridine synthase V428_14710 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_14710 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_14715 PF11890 Domain of unknown function (DUF3410) V428_14715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_14715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_14720 PF01569 PAP2 superfamily V428_14725 PF03180 NLPA lipoprotein V428_14730 PF07969 Amidohydrolase family V428_14760 PF01483 Proprotein convertase P-domain V428_14760 PF00082 Subtilase family V428_14770 PF14310 Fibronectin type III-like domain V428_14770 PF01915 Glycosyl hydrolase family 3 C-terminal domain V428_14770 PF00933 Glycosyl hydrolase family 3 N terminal domain V428_14780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain V428_14780 PF02896 PEP-utilising enzyme, TIM barrel domain V428_14780 PF00391 PEP-utilising enzyme, mobile domain V428_14785 PF03618 Kinase/pyrophosphorylase V428_14795 PF00324 Amino acid permease V428_14855 PF00664 ABC transporter transmembrane region V428_14855 PF00005 ABC transporter V428_14855 PF03412 Peptidase C39 family V428_14860 PF04055 Radical SAM superfamily V428_14860 PF16199 Radical_SAM C-terminal domain V428_14865 PF04898 Glutamate synthase central domain V428_14865 PF01645 Conserved region in glutamate synthase V428_14865 PF00310 Glutamine amidotransferases class-II V428_14865 PF01493 GXGXG motif V428_14870 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_14870 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_14880 PF00528 Binding-protein-dependent transport system inner membrane component V428_14885 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_14900 PF09278 MerR, DNA binding V428_14900 PF00376 MerR family regulatory protein V428_14915 PF14521 Lysine-specific metallo-endopeptidase V428_14925 PF00271 Helicase conserved C-terminal domain V428_14925 PF00270 DEAD/DEAH box helicase V428_14930 PF13302 Acetyltransferase (GNAT) domain V428_14955 PF07759 Protein of unknown function (DUF1615) V428_14960 PF08502 LeuA allosteric (dimerisation) domain V428_14960 PF00682 HMGL-like V428_14965 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain V428_14965 PF02142 MGS-like domain V428_14965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_14970 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain V428_14970 PF00117 Glutamine amidotransferase class-I V428_14975 PF01113 Dihydrodipicolinate reductase, N-terminus V428_14975 PF05173 Dihydrodipicolinate reductase, C-terminus V428_14985 PF01812 5-formyltetrahydrofolate cyclo-ligase family V428_14990 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V428_14995 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V428_15000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_15000 PF01842 ACT domain V428_15000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_15005 PF01219 Prokaryotic diacylglycerol kinase V428_15010 PF00793 DAHP synthetase I family V428_15015 PF00583 Acetyltransferase (GNAT) family V428_15020 PF00005 ABC transporter V428_15025 PF01032 FecCD transport family V428_15030 PF00512 His Kinase A (phospho-acceptor) domain V428_15030 PF01627 Hpt domain V428_15030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_15030 PF00989 PAS fold V428_15030 PF00072 Response regulator receiver domain V428_15030 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_15040 PF00437 Type II/IV secretion system protein V428_15045 PF00483 Nucleotidyl transferase V428_15060 PF07670 Nucleoside recognition V428_15060 PF02421 Ferrous iron transport protein B V428_15060 PF07664 Ferrous iron transport protein B C terminus V428_15070 PF01253 Translation initiation factor SUI1 V428_15075 PF01169 Uncharacterized protein family UPF0016 V428_15105 PF00990 Diguanylate cyclase, GGDEF domain V428_15105 PF13185 GAF domain V428_15125 PF01406 tRNA synthetases class I (C) catalytic domain V428_15125 PF09190 DALR domain V428_15130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V428_15140 PF00149 Calcineurin-like phosphoesterase V428_15145 PF03916 Polysulphide reductase, NrfD V428_15150 PF13247 4Fe-4S dicluster domain V428_15150 PF00037 4Fe-4S binding domain V428_15170 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V428_15175 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB V428_15185 PF01757 Acyltransferase family V428_15220 PF13276 HTH-like domain V428_15220 PF00665 Integrase core domain V428_15225 PF01527 Transposase V428_15235 PF04962 KduI/IolB family V428_15240 PF01261 Xylose isomerase-like TIM barrel V428_15245 PF00294 pfkB family carbohydrate kinase V428_15250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_15250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_15255 PF02653 Branched-chain amino acid transport system / permease component V428_15260 PF00005 ABC transporter V428_15265 PF13407 Periplasmic binding protein domain V428_15270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_15270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_15280 PF00205 Thiamine pyrophosphate enzyme, central domain V428_15280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_15280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_15290 PF00171 Aldehyde dehydrogenase family V428_15300 PF13007 Transposase C of IS166 homeodomain V428_15300 PF13817 IS66 C-terminal element V428_15300 PF03050 Transposase IS66 family V428_15300 PF13005 zinc-finger binding domain of transposase IS66 V428_15330 PF00589 Phage integrase family V428_15330 PF13356 Arm DNA-binding domain V428_15350 PF01066 CDP-alcohol phosphatidyltransferase V428_15355 PF08459 UvrC Helix-hairpin-helix N-terminal V428_15355 PF02151 UvrB/uvrC motif V428_15355 PF01541 GIY-YIG catalytic domain V428_15360 PF00072 Response regulator receiver domain V428_15360 PF00196 Bacterial regulatory proteins, luxR family V428_15365 PF02348 Cytidylyltransferase V428_15370 PF03966 Trm112p-like protein V428_15375 PF02606 Tetraacyldisaccharide-1-P 4'-kinase V428_15380 PF00664 ABC transporter transmembrane region V428_15380 PF00005 ABC transporter V428_15415 PF00816 H-NS histone family V428_15525 PF05872 Bacterial protein of unknown function (DUF853) V428_15530 PF00155 Aminotransferase class I and II V428_15540 PF13609 Gram-negative porin V428_15545 PF13307 Helicase C-terminal domain V428_15545 PF06733 DEAD_2 V428_15555 PF00850 Histone deacetylase domain V428_15560 PF07690 Major Facilitator Superfamily V428_15565 PF01926 50S ribosome-binding GTPase V428_15570 PF00245 Alkaline phosphatase V428_15575 PF00245 Alkaline phosphatase V428_15590 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_15590 PF14760 Rnk N-terminus V428_15595 PF00196 Bacterial regulatory proteins, luxR family V428_15595 PF00072 Response regulator receiver domain V428_15600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_15600 PF05231 MASE1 V428_15600 PF07730 Histidine kinase V428_15605 PF07690 Major Facilitator Superfamily V428_15610 PF00990 Diguanylate cyclase, GGDEF domain V428_15610 PF08448 PAS fold V428_15615 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_15620 PF00528 Binding-protein-dependent transport system inner membrane component V428_15625 PF00005 ABC transporter V428_15635 PF04116 Fatty acid hydroxylase superfamily V428_15640 PF13520 Amino acid permease V428_15645 PF02574 Homocysteine S-methyltransferase V428_15645 PF00809 Pterin binding enzyme V428_15645 PF02310 B12 binding domain V428_15645 PF02607 B12 binding domain V428_15645 PF02965 Vitamin B12 dependent methionine synthase, activation domain V428_15655 PF01595 Cyclin M transmembrane N-terminal domain V428_15655 PF03471 Transporter associated domain V428_15655 PF00571 CBS domain V428_15660 PF01895 PhoU domain V428_15675 PF00528 Binding-protein-dependent transport system inner membrane component V428_15680 PF00528 Binding-protein-dependent transport system inner membrane component V428_15685 PF14437 MafB19-like deaminase V428_15700 PF01274 Malate synthase V428_15705 PF00463 Isocitrate lyase family V428_15710 PF00308 Bacterial dnaA protein V428_15725 PF00586 AIR synthase related protein, N-terminal domain V428_15725 PF02769 AIR synthase related protein, C-terminal domain V428_15730 PF00551 Formyl transferase V428_15735 PF01784 NIF3 (NGG1p interacting factor 3) V428_15740 PF00158 Sigma-54 interaction domain V428_15740 PF02954 Bacterial regulatory protein, Fis family V428_15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_15745 PF00512 His Kinase A (phospho-acceptor) domain V428_15745 PF00989 PAS fold V428_15750 PF02954 Bacterial regulatory protein, Fis family V428_15750 PF00072 Response regulator receiver domain V428_15750 PF00158 Sigma-54 interaction domain V428_15760 PF01842 ACT domain V428_15765 PF13089 Polyphosphate kinase N-terminal domain V428_15765 PF17941 Polyphosphate kinase C-terminal domain 1 V428_15765 PF02503 Polyphosphate kinase middle domain V428_15765 PF13090 Polyphosphate kinase C-terminal domain 2 V428_15770 PF02541 Ppx/GppA phosphatase family V428_15775 PF03448 MgtE intracellular N domain V428_15775 PF01769 Divalent cation transporter V428_15775 PF00571 CBS domain V428_15780 PF00669 Bacterial flagellin N-terminal helical region V428_15785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15785 PF00460 Flagella basal body rod protein V428_15790 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase V428_15790 PF10135 Rod binding protein V428_15795 PF02119 Flagellar P-ring protein V428_15800 PF02107 Flagellar L-ring protein V428_15805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15805 PF00460 Flagella basal body rod protein V428_15810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15810 PF00460 Flagella basal body rod protein V428_15815 PF07559 Flagellar basal body protein FlaE V428_15815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15815 PF00460 Flagella basal body rod protein V428_15825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15825 PF00460 Flagella basal body rod protein V428_15830 PF00460 Flagella basal body rod protein V428_15835 PF03705 CheR methyltransferase, all-alpha domain V428_15835 PF01739 CheR methyltransferase, SAM binding domain V428_15840 PF01584 CheW-like domain V428_15840 PF00072 Response regulator receiver domain V428_15845 PF13144 Chaperone for flagella basal body P-ring formation V428_15860 PF12850 Calcineurin-like phosphoesterase superfamily domain V428_15865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_15875 PF01479 S4 domain V428_15875 PF00849 RNA pseudouridylate synthase V428_15880 PF11871 Domain of unknown function (DUF3391) V428_15880 PF01966 HD domain V428_15890 PF00923 Transaldolase/Fructose-6-phosphate aldolase V428_15895 PF04055 Radical SAM superfamily V428_15905 PF00455 DeoR C terminal sensor domain V428_15905 PF08220 DeoR-like helix-turn-helix domain V428_15910 PF00892 EamA-like transporter family V428_15915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_15940 PF00313 'Cold-shock' DNA-binding domain V428_15945 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_15945 PF00364 Biotin-requiring enzyme V428_15945 PF02817 e3 binding domain V428_15950 PF02779 Transketolase, pyrimidine binding domain V428_15950 PF02780 Transketolase, C-terminal domain V428_15955 PF00676 Dehydrogenase E1 component V428_15960 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V428_15970 PF05472 DNA replication terminus site-binding protein (Ter protein) V428_15975 PF00176 SNF2 family N-terminal domain V428_15975 PF00271 Helicase conserved C-terminal domain V428_15975 PF04434 SWIM zinc finger V428_15980 PF04337 Protein of unknown function, DUF480 V428_15990 PF06082 Exopolysaccharide biosynthesis protein YbjH V428_16010 PF02706 Chain length determinant protein V428_16020 PF00483 Nucleotidyl transferase V428_16025 PF04321 RmlD substrate binding domain V428_16030 PF00953 Glycosyl transferase family 4 V428_16045 PF00483 Nucleotidyl transferase V428_16045 PF01050 Mannose-6-phosphate isomerase V428_16055 PF01370 NAD dependent epimerase/dehydratase family V428_16060 PF16363 GDP-mannose 4,6 dehydratase V428_16075 PF01943 Polysaccharide biosynthesis protein V428_16080 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_16095 PF16363 GDP-mannose 4,6 dehydratase V428_16100 PF00873 AcrB/AcrD/AcrF family V428_16105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_16105 PF00529 HlyD membrane-fusion protein of T1SS V428_16110 PF00440 Bacterial regulatory proteins, tetR family V428_16110 PF08361 MAATS-type transcriptional repressor, C-terminal region V428_16135 PF00849 RNA pseudouridylate synthase V428_16135 PF01479 S4 domain V428_16140 PF04079 Segregation and condensation complex subunit ScpB V428_16145 PF02616 Segregation and condensation protein ScpA V428_16150 PF01300 Telomere recombination V428_16155 PF02811 PHP domain V428_16160 PF00425 chorismate binding enzyme V428_16160 PF04715 Anthranilate synthase component I, N terminal region V428_16165 PF00117 Glutamine amidotransferase class-I V428_16165 PF00591 Glycosyl transferase family, a/b domain V428_16165 PF02885 Glycosyl transferase family, helical bundle domain V428_16170 PF00591 Glycosyl transferase family, a/b domain V428_16170 PF02885 Glycosyl transferase family, helical bundle domain V428_16175 PF00218 Indole-3-glycerol phosphate synthase V428_16175 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase V428_16180 PF00291 Pyridoxal-phosphate dependent enzyme V428_16185 PF00290 Tryptophan synthase alpha chain V428_16225 PF07662 Na+ dependent nucleoside transporter C-terminus V428_16225 PF07670 Nucleoside recognition V428_16225 PF01773 Na+ dependent nucleoside transporter N-terminus V428_16255 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_16270 PF00857 Isochorismatase family V428_16275 PF02629 CoA binding domain V428_16275 PF00549 CoA-ligase V428_16280 PF06545 Protein of unknown function (DUF1116) V428_16285 PF00696 Amino acid kinase family V428_16300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_16300 PF03466 LysR substrate binding domain V428_16345 PF04002 RadC-like JAB domain V428_16390 PF02613 Nitrate reductase delta subunit V428_16395 PF01568 Molydopterin dinucleotide binding domain V428_16395 PF18364 Molybdopterin oxidoreductase N-terminal domain V428_16395 PF00384 Molybdopterin oxidoreductase V428_16400 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_16405 PF00072 Response regulator receiver domain V428_16405 PF00486 Transcriptional regulatory protein, C terminal V428_16415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_16420 PF00672 HAMP domain V428_16420 PF00072 Response regulator receiver domain V428_16420 PF00512 His Kinase A (phospho-acceptor) domain V428_16420 PF01627 Hpt domain V428_16420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_16425 PF07690 Major Facilitator Superfamily V428_16430 PF01040 UbiA prenyltransferase family V428_16435 PF03626 Prokaryotic Cytochrome C oxidase subunit IV V428_16440 PF00510 Cytochrome c oxidase subunit III V428_16445 PF00115 Cytochrome C and Quinol oxidase polypeptide I V428_16450 PF06481 COX Aromatic Rich Motif V428_16450 PF00116 Cytochrome C oxidase subunit II, periplasmic domain V428_16460 PF00034 Cytochrome c V428_16460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_16470 PF01156 Inosine-uridine preferring nucleoside hydrolase V428_16485 PF00127 Copper binding proteins, plastocyanin/azurin family V428_16490 PF02424 ApbE family V428_16495 PF07690 Major Facilitator Superfamily V428_16510 PF03372 Endonuclease/Exonuclease/phosphatase family V428_16515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_16520 PF00873 AcrB/AcrD/AcrF family V428_16530 PF00529 HlyD membrane-fusion protein of T1SS V428_16530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_16535 PF00873 AcrB/AcrD/AcrF family V428_16555 PF03099 Biotin/lipoate A/B protein ligase family V428_16555 PF10437 Bacterial lipoate protein ligase C-terminus V428_16560 PF00563 EAL domain V428_16560 PF00990 Diguanylate cyclase, GGDEF domain V428_16560 PF03707 Bacterial signalling protein N terminal repeat V428_16565 PF00873 AcrB/AcrD/AcrF family V428_16580 PF04143 Sulphur transport V428_16585 PF01022 Bacterial regulatory protein, arsR family V428_16600 PF02308 MgtC family V428_16605 PF00356 Bacterial regulatory proteins, lacI family V428_16605 PF13407 Periplasmic binding protein domain V428_16610 PF08244 Glycosyl hydrolases family 32 C terminal V428_16610 PF00251 Glycosyl hydrolases family 32 N-terminal domain V428_16615 PF00367 phosphotransferase system, EIIB V428_16615 PF02378 Phosphotransferase system, EIIC V428_16620 PF00294 pfkB family carbohydrate kinase V428_16625 PF11471 Maltoporin periplasmic N-terminal extension V428_16625 PF02264 LamB porin V428_16630 PF01556 DnaJ C terminal domain V428_16630 PF00684 DnaJ central domain V428_16630 PF00226 DnaJ domain V428_16635 PF00012 Hsp70 protein V428_16640 PF01025 GrpE V428_16645 PF01513 ATP-NAD kinase V428_16650 PF02463 RecF/RecN/SMC N terminal domain V428_16660 PF02833 DHHA2 domain V428_16660 PF01368 DHH family V428_16670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_16675 PF00005 ABC transporter V428_16675 PF12704 MacB-like periplasmic core domain V428_16675 PF02687 FtsX-like permease family V428_16680 PF02321 Outer membrane efflux protein V428_16685 PF08021 Siderophore-interacting FAD-binding domain V428_16685 PF04954 Siderophore-interacting protein V428_16690 PF00793 DAHP synthetase I family V428_16695 PF00816 H-NS histone family V428_16710 PF01266 FAD dependent oxidoreductase V428_16715 PF07883 Cupin domain V428_16715 PF01381 Helix-turn-helix V428_16720 PF00171 Aldehyde dehydrogenase family V428_16725 PF00202 Aminotransferase class-III V428_16735 PF00324 Amino acid permease V428_16745 PF13520 Amino acid permease V428_16755 PF02690 Na+/Pi-cotransporter V428_16760 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_16760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_16770 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase V428_16775 PF00072 Response regulator receiver domain V428_16775 PF00512 His Kinase A (phospho-acceptor) domain V428_16775 PF01627 Hpt domain V428_16775 PF00989 PAS fold V428_16775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_16775 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_16790 PF01048 Phosphorylase superfamily V428_16810 PF12848 ABC transporter V428_16810 PF00005 ABC transporter V428_16825 PF13474 SnoaL-like domain V428_16830 PF14821 Threonine synthase N terminus V428_16830 PF00291 Pyridoxal-phosphate dependent enzyme V428_16835 PF08544 GHMP kinases C terminal V428_16835 PF00288 GHMP kinases N terminal domain V428_16840 PF00696 Amino acid kinase family V428_16840 PF01842 ACT domain V428_16840 PF13840 ACT domain V428_16840 PF00742 Homoserine dehydrogenase V428_16840 PF03447 Homoserine dehydrogenase, NAD binding domain V428_16845 PF00588 SpoU rRNA Methylase family V428_16850 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) V428_16865 PF03737 Aldolase/RraA V428_16880 PF00072 Response regulator receiver domain V428_16880 PF00486 Transcriptional regulatory protein, C terminal V428_16895 PF00664 ABC transporter transmembrane region V428_16895 PF00005 ABC transporter V428_16900 PF00005 ABC transporter V428_16900 PF00664 ABC transporter transmembrane region V428_16920 PF18389 TrmO C-terminal domain V428_16920 PF01980 tRNA-methyltransferase O V428_16925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V428_16925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V428_16935 PF02861 Clp amino terminal domain, pathogenicity island component V428_16935 PF17871 AAA lid domain V428_16935 PF07724 AAA domain (Cdc48 subfamily) V428_16935 PF00004 ATPase family associated with various cellular activities (AAA) V428_16935 PF10431 C-terminal, D2-small domain, of ClpB protein V428_16940 PF00291 Pyridoxal-phosphate dependent enzyme V428_16945 PF00381 PTS HPr component phosphorylation site V428_16950 PF00391 PEP-utilising enzyme, mobile domain V428_16950 PF02896 PEP-utilising enzyme, TIM barrel domain V428_16950 PF05524 PEP-utilising enzyme, N-terminal V428_16955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V428_16960 PF00990 Diguanylate cyclase, GGDEF domain V428_16960 PF17151 Periplasmic sensor domain V428_16970 PF01292 Prokaryotic cytochrome b561 V428_16985 PF13476 AAA domain V428_16990 PF12320 Type 5 capsule protein repressor C-terminal domain V428_16990 PF00149 Calcineurin-like phosphoesterase V428_17000 PF04381 Putative exonuclease, RdgC V428_17015 PF00999 Sodium/hydrogen exchanger family V428_17015 PF02254 TrkA-N domain V428_17020 PF04151 Bacterial pre-peptidase C-terminal domain V428_17020 PF04389 Peptidase family M28 V428_17030 PF00224 Pyruvate kinase, barrel domain V428_17030 PF02887 Pyruvate kinase, alpha/beta domain V428_17035 PF12795 Mechanosensitive ion channel porin domain V428_17035 PF12794 Mechanosensitive ion channel inner membrane domain 1 V428_17035 PF00924 Mechanosensitive ion channel V428_17045 PF10282 Lactonase, 7-bladed beta-propeller V428_17050 PF00860 Permease family V428_17060 PF05433 Glycine zipper 2TM domain V428_17060 PF16998 17 kDa outer membrane surface antigen V428_17065 PF00390 Malic enzyme, N-terminal domain V428_17065 PF03949 Malic enzyme, NAD binding domain V428_17070 PF00072 Response regulator receiver domain V428_17080 PF13247 4Fe-4S dicluster domain V428_17085 PF12838 4Fe-4S dicluster domain V428_17085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_17085 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V428_17085 PF01568 Molydopterin dinucleotide binding domain V428_17085 PF00384 Molybdopterin oxidoreductase V428_17085 PF00384 Molybdopterin oxidoreductase V428_17085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_17085 PF01568 Molydopterin dinucleotide binding domain V428_17085 PF12838 4Fe-4S dicluster domain V428_17085 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V428_17125 PF02634 FdhD/NarQ family V428_17130 PF12727 PBP superfamily domain V428_17130 PF12728 Helix-turn-helix domain V428_17135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_17135 PF00512 His Kinase A (phospho-acceptor) domain V428_17135 PF00989 PAS fold V428_17140 PF02954 Bacterial regulatory protein, Fis family V428_17140 PF00072 Response regulator receiver domain V428_17140 PF00158 Sigma-54 interaction domain V428_17145 PF12849 PBP superfamily domain V428_17150 PF00528 Binding-protein-dependent transport system inner membrane component V428_17155 PF00005 ABC transporter V428_17160 PF12804 MobA-like NTP transferase domain V428_17165 PF03453 MoeA N-terminal region (domain I and II) V428_17165 PF00994 Probable molybdopterin binding domain V428_17165 PF03454 MoeA C-terminal region (domain IV) V428_17170 PF04632 Fusaric acid resistance protein family V428_17185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_17185 PF08447 PAS fold V428_17185 PF13426 PAS domain V428_17205 PF05114 Protein of unknown function (DUF692) V428_17215 PF10725 Protein of unknown function (DUF2517) V428_17235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_17235 PF00512 His Kinase A (phospho-acceptor) domain V428_17235 PF09308 LuxQ, periplasmic V428_17235 PF00072 Response regulator receiver domain V428_17240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_17245 PF00528 Binding-protein-dependent transport system inner membrane component V428_17250 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_17250 PF00528 Binding-protein-dependent transport system inner membrane component V428_17255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_17255 PF00005 ABC transporter V428_17260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_17260 PF00005 ABC transporter V428_17270 PF01869 BadF/BadG/BcrA/BcrD ATPase family V428_17275 PF02838 Glycosyl hydrolase family 20, domain 2 V428_17275 PF00728 Glycosyl hydrolase family 20, catalytic domain V428_17300 PF01131 DNA topoisomerase V428_17300 PF08272 Topoisomerase I zinc-ribbon-like V428_17300 PF01751 Toprim domain V428_17300 PF01396 Topoisomerase DNA binding C4 zinc finger V428_17305 PF04996 Succinylarginine dihydrolase V428_17310 PF01343 Peptidase family S49 V428_17310 PF08496 Peptidase family S49 N-terminal V428_17315 PF00106 short chain dehydrogenase V428_17320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17320 PF03466 LysR substrate binding domain V428_17325 PF07690 Major Facilitator Superfamily V428_17330 PF00155 Aminotransferase class I and II V428_17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17340 PF03466 LysR substrate binding domain V428_17350 PF01161 Phosphatidylethanolamine-binding protein V428_17360 PF01204 Trehalase V428_17365 PF00579 tRNA synthetases class I (W and Y) V428_17370 PF01476 LysM domain V428_17370 PF01551 Peptidase family M23 V428_17370 PF08525 Opacity-associated protein A N-terminal motif V428_17385 PF03702 Anhydro-N-acetylmuramic acid kinase V428_17395 PF01965 DJ-1/PfpI family V428_17400 PF01042 Endoribonuclease L-PSP V428_17425 PF00456 Transketolase, thiamine diphosphate binding domain V428_17425 PF02780 Transketolase, C-terminal domain V428_17425 PF02779 Transketolase, pyrimidine binding domain V428_17430 PF02772 S-adenosylmethionine synthetase, central domain V428_17430 PF02773 S-adenosylmethionine synthetase, C-terminal domain V428_17430 PF00438 S-adenosylmethionine synthetase, N-terminal domain V428_17435 PF17283 SprT-like zinc ribbon domain V428_17435 PF10263 SprT-like family V428_17440 PF04231 Endonuclease I V428_17445 PF04452 RNA methyltransferase V428_17450 PF02951 Prokaryotic glutathione synthetase, N-terminal domain V428_17450 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain V428_17455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_17455 PF12729 Four helix bundle sensory module for signal transduction V428_17455 PF00672 HAMP domain V428_17460 PF02622 Uncharacterized ACR, COG1678 V428_17465 PF03652 Holliday junction resolvase V428_17470 PF00854 POT family V428_17475 PF00144 Beta-lactamase V428_17480 PF07726 ATPase family associated with various cellular activities (AAA) V428_17480 PF17863 AAA lid domain V428_17490 PF01841 Transglutaminase-like superfamily V428_17490 PF13559 Domain of unknown function (DUF4129) V428_17490 PF11992 Domain of unknown function (DUF3488) V428_17495 PF01235 Sodium:alanine symporter family V428_17500 PF00923 Transaldolase/Fructose-6-phosphate aldolase V428_17515 PF03167 Uracil DNA glycosylase superfamily V428_17520 PF01228 Glycine radical V428_17525 PF00375 Sodium:dicarboxylate symporter family V428_17530 PF00793 DAHP synthetase I family V428_17535 PF13369 Transglutaminase-like superfamily V428_17545 PF17827 PrmC N-terminal domain V428_17545 PF13847 Methyltransferase domain V428_17550 PF03462 PCRF domain V428_17550 PF00472 RF-1 domain V428_17555 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain V428_17555 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain V428_17555 PF01488 Shikimate / quinate 5-dehydrogenase V428_17560 PF03550 Outer membrane lipoprotein LolB V428_17565 PF08544 GHMP kinases C terminal V428_17565 PF00288 GHMP kinases N terminal domain V428_17575 PF14572 Phosphoribosyl synthetase-associated domain V428_17575 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase V428_17580 PF02872 5'-nucleotidase, C-terminal domain V428_17580 PF00149 Calcineurin-like phosphoesterase V428_17585 PF01195 Peptidyl-tRNA hydrolase V428_17590 PF01926 50S ribosome-binding GTPase V428_17590 PF06071 Protein of unknown function (DUF933) V428_17635 PF03600 Citrate transporter V428_17635 PF02080 TrkA-C domain V428_17640 PF04973 Nicotinamide mononucleotide transporter V428_17645 PF01048 Phosphorylase superfamily V428_17665 PF16657 Maltogenic Amylase, C-terminal domain V428_17665 PF00128 Alpha amylase, catalytic domain V428_17675 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V428_17675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_17675 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V428_17675 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II V428_17675 PF10371 Domain of unknown function V428_17680 PF07690 Major Facilitator Superfamily V428_17685 PF13419 Haloacid dehalogenase-like hydrolase V428_17695 PF00171 Aldehyde dehydrogenase family V428_17700 PF04958 Arginine N-succinyltransferase beta subunit V428_17705 PF00202 Aminotransferase class-III V428_17710 PF00117 Glutamine amidotransferase class-I V428_17720 PF00579 tRNA synthetases class I (W and Y) V428_17725 PF13419 Haloacid dehalogenase-like hydrolase V428_17730 PF00834 Ribulose-phosphate 3 epimerase family V428_17735 PF02086 D12 class N6 adenine-specific DNA methyltransferase V428_17745 PF01761 3-dehydroquinate synthase V428_17750 PF01202 Shikimate kinase V428_17755 PF11741 AMIN domain V428_17755 PF07660 Secretin and TonB N terminus short domain V428_17755 PF00263 Bacterial type II and III secretion system protein V428_17755 PF03958 Bacterial type II/III secretion system short domain V428_17780 PF00912 Transglycosylase V428_17780 PF00905 Penicillin binding protein transpeptidase domain V428_17780 PF17092 Penicillin-binding protein OB-like domain V428_17785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17785 PF03466 LysR substrate binding domain V428_17790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_17790 PF00672 HAMP domain V428_17790 PF02743 Cache domain V428_17805 PF03466 LysR substrate binding domain V428_17805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17820 PF01551 Peptidase family M23 V428_17820 PF08525 Opacity-associated protein A N-terminal motif V428_17820 PF01476 LysM domain V428_17830 PF12795 Mechanosensitive ion channel porin domain V428_17830 PF12794 Mechanosensitive ion channel inner membrane domain 1 V428_17830 PF00924 Mechanosensitive ion channel V428_17835 PF03009 Glycerophosphoryl diester phosphodiesterase family V428_17840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_17840 PF00672 HAMP domain V428_17840 PF02743 Cache domain V428_17845 PF02910 Fumarate reductase flavoprotein C-term V428_17845 PF00890 FAD binding domain V428_17850 PF13085 2Fe-2S iron-sulfur cluster binding domain V428_17850 PF13183 4Fe-4S dicluster domain V428_17855 PF02300 Fumarate reductase subunit C V428_17860 PF02313 Fumarate reductase subunit D V428_17880 PF06224 Winged helix DNA-binding domain V428_17895 PF00501 AMP-binding enzyme V428_17915 PF00486 Transcriptional regulatory protein, C terminal V428_17915 PF00072 Response regulator receiver domain V428_17920 PF00512 His Kinase A (phospho-acceptor) domain V428_17920 PF08521 Two-component sensor kinase N-terminal V428_17920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_17930 PF00478 IMP dehydrogenase / GMP reductase domain V428_17940 PF01132 Elongation factor P (EF-P) OB domain V428_17940 PF08207 Elongation factor P (EF-P) KOW-like domain V428_17940 PF09285 Elongation factor P, C-terminal V428_17945 PF09997 Predicted membrane protein (DUF2238) V428_17955 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_17955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_17965 PF00990 Diguanylate cyclase, GGDEF domain V428_17965 PF08448 PAS fold V428_17975 PF13419 Haloacid dehalogenase-like hydrolase V428_17990 PF05230 MASE2 domain V428_17990 PF00990 Diguanylate cyclase, GGDEF domain V428_17995 PF00313 'Cold-shock' DNA-binding domain V428_18000 PF00857 Isochorismatase family V428_18005 PF01494 FAD binding domain V428_18010 PF01938 TRAM domain V428_18010 PF00919 Uncharacterized protein family UPF0004 V428_18010 PF04055 Radical SAM superfamily V428_18015 PF02562 PhoH-like protein V428_18020 PF02130 Uncharacterized protein family UPF0054 V428_18025 PF00571 CBS domain V428_18025 PF03471 Transporter associated domain V428_18030 PF00795 Carbon-nitrogen hydrolase V428_18035 PF07295 Zinc-ribbon containing domain V428_18040 PF00133 tRNA synthetases class I (I, L, M and V) V428_18040 PF13603 Leucyl-tRNA synthetase, Domain 2 V428_18040 PF08264 Anticodon-binding domain of tRNA V428_18055 PF01467 Cytidylyltransferase-like V428_18065 PF02590 Predicted SPOUT methyltransferase V428_18070 PF03717 Penicillin-binding Protein dimerisation domain V428_18070 PF00905 Penicillin binding protein transpeptidase domain V428_18075 PF01098 Cell cycle protein V428_18085 PF13406 Transglycosylase SLT domain V428_18090 PF03330 Lytic transglycolase V428_18090 PF05036 Sporulation related domain V428_18095 PF07943 Penicillin-binding protein 5, C-terminal domain V428_18095 PF00768 D-alanyl-D-alanine carboxypeptidase V428_18100 PF04359 Protein of unknown function (DUF493) V428_18105 PF03099 Biotin/lipoate A/B protein ligase family V428_18115 PF04055 Radical SAM superfamily V428_18115 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family V428_18125 PF06821 Serine hydrolase V428_18130 PF02508 Rnf-Nqr subunit, membrane protein V428_18145 PF13411 MerR HTH family regulatory protein V428_18150 PF17768 RecJ OB domain V428_18150 PF02272 DHHA1 domain V428_18150 PF01368 DHH family V428_18155 PF10411 Disulfide bond isomerase protein N-terminus V428_18155 PF13098 Thioredoxin-like domain V428_18160 PF01741 Large-conductance mechanosensitive channel, MscL V428_18165 PF02899 Phage integrase, N-terminal SAM-like domain V428_18165 PF00589 Phage integrase family V428_18170 PF00258 Flavodoxin V428_18175 PF01523 Putative modulator of DNA gyrase V428_18180 PF01523 Putative modulator of DNA gyrase V428_18190 PF17969 L,D-transpeptidase C-terminal domain V428_18190 PF03734 L,D-transpeptidase catalytic domain V428_18225 PF01568 Molydopterin dinucleotide binding domain V428_18225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_18225 PF00384 Molybdopterin oxidoreductase V428_18230 PF03916 Polysulphide reductase, NrfD V428_18235 PF13247 4Fe-4S dicluster domain V428_18240 PF00512 His Kinase A (phospho-acceptor) domain V428_18240 PF00989 PAS fold V428_18240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_18245 PF00196 Bacterial regulatory proteins, luxR family V428_18245 PF00072 Response regulator receiver domain V428_18255 PF04397 LytTr DNA-binding domain V428_18255 PF00072 Response regulator receiver domain V428_18265 PF13722 5TM C-terminal transporter carbon starvation CstA V428_18265 PF02554 Carbon starvation protein CstA V428_18270 PF03575 Peptidase family S51 V428_18275 PF10415 Fumarase C C-terminus V428_18275 PF00206 Lyase V428_18285 PF02635 DsrE/DsrF-like family V428_18290 PF03707 Bacterial signalling protein N terminal repeat V428_18290 PF00990 Diguanylate cyclase, GGDEF domain V428_18290 PF00563 EAL domain V428_18300 PF03725 3' exoribonuclease family, domain 2 V428_18300 PF00575 S1 RNA binding domain V428_18300 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain V428_18300 PF01138 3' exoribonuclease family, domain 1 V428_18300 PF00013 KH domain V428_18305 PF00312 Ribosomal protein S15 V428_18310 PF16198 tRNA pseudouridylate synthase B C-terminal domain V428_18310 PF09157 Pseudouridine synthase II TruB, C-terminal V428_18310 PF01509 TruB family pseudouridylate synthase (N terminal domain) V428_18315 PF02033 Ribosome-binding factor A V428_18320 PF08364 Bacterial translation initiation factor IF-2 associated region V428_18320 PF04760 Translation initiation factor IF-2, N-terminal region V428_18320 PF00009 Elongation factor Tu GTP binding domain V428_18320 PF11987 Translation-initiation factor 2 V428_18325 PF13184 NusA-like KH domain V428_18325 PF00575 S1 RNA binding domain V428_18325 PF08529 NusA N-terminal domain V428_18330 PF02576 RimP N-terminal domain V428_18330 PF17384 RimP C-terminal SH3 domain V428_18345 PF03840 Preprotein translocase SecG subunit V428_18350 PF00121 Triosephosphate isomerase V428_18355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V428_18355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V428_18355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V428_18355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V428_18360 PF00809 Pterin binding enzyme V428_18365 PF17862 AAA+ lid domain V428_18365 PF06480 FtsH Extracellular V428_18365 PF01434 Peptidase family M41 V428_18365 PF00004 ATPase family associated with various cellular activities (AAA) V428_18370 PF01728 FtsJ-like methyltransferase V428_18375 PF01985 CRS1 / YhbY (CRM) domain V428_18385 PF03449 Transcription elongation factor, N-terminal V428_18385 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_18390 PF13677 Membrane MotB of proton-channel complex MotA/MotB V428_18390 PF00691 OmpA family V428_18395 PF01618 MotA/TolQ/ExbB proton channel family V428_18400 PF02609 Exonuclease VII small subunit V428_18405 PF00348 Polyprenyl synthetase V428_18410 PF13292 1-deoxy-D-xylulose-5-phosphate synthase V428_18410 PF02779 Transketolase, pyrimidine binding domain V428_18410 PF02780 Transketolase, C-terminal domain V428_18415 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_18415 PF00528 Binding-protein-dependent transport system inner membrane component V428_18425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_18430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_18430 PF00005 ABC transporter V428_18435 PF04608 Phosphatidylglycerophosphatase A V428_18440 PF00586 AIR synthase related protein, N-terminal domain V428_18440 PF02769 AIR synthase related protein, C-terminal domain V428_18445 PF01029 NusB family V428_18450 PF00885 6,7-dimethyl-8-ribityllumazine synthase V428_18460 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V428_18460 PF00925 GTP cyclohydrolase II V428_18465 PF00677 Lumazine binding domain V428_18470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V428_18470 PF01872 RibD C-terminal domain V428_18475 PF03477 ATP cone domain V428_18490 PF00464 Serine hydroxymethyltransferase V428_18505 PF02613 Nitrate reductase delta subunit V428_18525 PF00990 Diguanylate cyclase, GGDEF domain V428_18525 PF00563 EAL domain V428_18525 PF13188 PAS domain V428_18525 PF03707 Bacterial signalling protein N terminal repeat V428_18535 PF00501 AMP-binding enzyme V428_18535 PF13193 AMP-binding enzyme C-terminal domain V428_18535 PF16177 Acetyl-coenzyme A synthetase N-terminus V428_18545 PF01220 Dehydroquinase class II V428_18550 PF00364 Biotin-requiring enzyme V428_18555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_18555 PF00289 Biotin carboxylase, N-terminal domain V428_18555 PF02785 Biotin carboxylase C-terminal domain V428_18565 PF00474 Sodium:solute symporter family V428_18570 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V428_18570 PF00367 phosphotransferase system, EIIB V428_18570 PF02378 Phosphotransferase system, EIIC V428_18575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_18575 PF03466 LysR substrate binding domain V428_18580 PF08240 Alcohol dehydrogenase GroES-like domain V428_18580 PF00107 Zinc-binding dehydrogenase V428_18590 PF01842 ACT domain V428_18590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_18590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_18595 PF14602 Hexapeptide repeat of succinyl-transferase V428_18595 PF12464 Maltose acetyltransferase V428_18600 PF00881 Nitroreductase family V428_18605 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_18605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_18610 PF01343 Peptidase family S49 V428_18625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_18625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_18630 PF07023 Protein of unknown function (DUF1315) V428_18635 PF17763 Glutaminase/Asparaginase C-terminal domain V428_18635 PF00710 Asparaginase, N-terminal V428_18640 PF03616 Sodium/glutamate symporter V428_18645 PF00672 HAMP domain V428_18645 PF02743 Cache domain V428_18645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_18650 PF03462 PCRF domain V428_18650 PF00472 RF-1 domain V428_18655 PF00152 tRNA synthetases class II (D, K and N) V428_18655 PF01336 OB-fold nucleic acid binding domain V428_18660 PF02567 Phenazine biosynthesis-like protein V428_18665 PF00258 Flavodoxin V428_18665 PF00667 FAD binding domain V428_18665 PF00175 Oxidoreductase NAD-binding domain V428_18670 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_18670 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_18675 PF01507 Phosphoadenosine phosphosulfate reductase family V428_18680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system V428_18685 PF00528 Binding-protein-dependent transport system inner membrane component V428_18690 PF00005 ABC transporter V428_18690 PF00571 CBS domain V428_18695 PF00186 Dihydrofolate reductase V428_18700 PF12821 Threonine/Serine exporter, ThrE V428_18705 PF06738 Putative threonine/serine exporter V428_18715 PF00994 Probable molybdopterin binding domain V428_18725 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_18725 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_18740 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_18740 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_18765 PF00221 Aromatic amino acid lyase V428_18775 PF07977 FabA-like domain V428_18780 PF13193 AMP-binding enzyme C-terminal domain V428_18780 PF00501 AMP-binding enzyme V428_18790 PF00550 Phosphopantetheine attachment site V428_18795 PF00550 Phosphopantetheine attachment site V428_18830 PF00034 Cytochrome c V428_18830 PF03150 Di-haem cytochrome c peroxidase V428_18835 PF00194 Eukaryotic-type carbonic anhydrase V428_18840 PF04227 Indigoidine synthase A like protein V428_18845 PF00294 pfkB family carbohydrate kinase V428_18850 PF04324 BFD-like [2Fe-2S] binding domain V428_18850 PF18267 Rubredoxin NAD+ reductase C-terminal domain V428_18850 PF13806 Rieske-like [2Fe-2S] domain V428_18850 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_18850 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_18850 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_18855 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_18855 PF04324 BFD-like [2Fe-2S] binding domain V428_18855 PF18267 Rubredoxin NAD+ reductase C-terminal domain V428_18855 PF13806 Rieske-like [2Fe-2S] domain V428_18855 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_18855 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_18860 PF00005 ABC transporter V428_18865 PF00528 Binding-protein-dependent transport system inner membrane component V428_18870 PF00005 ABC transporter V428_18880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_18880 PF10414 Sirohaem synthase dimerisation region V428_18880 PF14824 Sirohaem biosynthesis protein central V428_18885 PF00384 Molybdopterin oxidoreductase V428_18885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_18885 PF04324 BFD-like [2Fe-2S] binding domain V428_18885 PF01568 Molydopterin dinucleotide binding domain V428_18900 PF00582 Universal stress protein family V428_18910 PF00171 Aldehyde dehydrogenase family V428_18915 PF01472 PUA domain V428_18915 PF00696 Amino acid kinase family V428_18920 PF07417 Sigma factor-binding transcriptional regulator Crl V428_18930 PF00156 Phosphoribosyl transferase domain V428_18935 PF01546 Peptidase family M20/M25/M40 V428_18935 PF07687 Peptidase dimerisation domain V428_18945 PF00005 ABC transporter V428_18945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_18950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_18950 PF00005 ABC transporter V428_18960 PF00528 Binding-protein-dependent transport system inner membrane component V428_18960 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_18965 PF00528 Binding-protein-dependent transport system inner membrane component V428_18970 PF00593 TonB dependent receptor V428_18970 PF07715 TonB-dependent Receptor Plug Domain V428_18980 PF01618 MotA/TolQ/ExbB proton channel family V428_18985 PF01618 MotA/TolQ/ExbB proton channel family V428_18990 PF02472 Biopolymer transport protein ExbD/TolR V428_19005 PF00704 Glycosyl hydrolases family 18 V428_19005 PF06483 Chitinase C V428_19045 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_19050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_19050 PF00672 HAMP domain V428_19060 PF00313 'Cold-shock' DNA-binding domain V428_19090 PF00929 Exonuclease V428_19095 PF03193 RsgA GTPase V428_19100 PF02666 Phosphatidylserine decarboxylase V428_19105 PF09905 DNA-binding protein VF530 V428_19125 PF03707 Bacterial signalling protein N terminal repeat V428_19125 PF00990 Diguanylate cyclase, GGDEF domain V428_19125 PF00563 EAL domain V428_19130 PF06877 Regulator of ribonuclease activity B V428_19135 PF05547 Immune inhibitor A peptidase M6 V428_19135 PF00801 PKD domain V428_19155 PF00561 alpha/beta hydrolase fold V428_19160 PF00664 ABC transporter transmembrane region V428_19160 PF00005 ABC transporter V428_19165 PF06004 Bacterial protein of unknown function (DUF903) V428_19170 PF05922 Peptidase inhibitor I9 V428_19170 PF00082 Subtilase family V428_19175 PF00581 Rhodanese-like domain V428_19180 PF04960 Glutaminase V428_19185 PF04320 Protein with unknown function (DUF469) V428_19190 PF02390 Putative methyltransferase V428_19195 PF04389 Peptidase family M28 V428_19195 PF01483 Proprotein convertase P-domain V428_19200 PF00155 Aminotransferase class I and II V428_19205 PF12792 CSS motif domain associated with EAL V428_19205 PF00563 EAL domain V428_19210 PF01370 NAD dependent epimerase/dehydratase family V428_19210 PF08338 Domain of unknown function (DUF1731) V428_19220 PF00005 ABC transporter V428_19225 PF13472 GDSL-like Lipase/Acylhydrolase family V428_19230 PF00072 Response regulator receiver domain V428_19230 PF01584 CheW-like domain V428_19240 PF06826 Predicted Permease Membrane Region V428_19240 PF02080 TrkA-C domain V428_19245 PF03006 Haemolysin-III related V428_19250 PF00282 Pyridoxal-dependent decarboxylase conserved domain V428_19255 PF04279 Intracellular septation protein A V428_19260 PF03795 YCII-related domain V428_19265 PF00459 Inositol monophosphatase family V428_19275 PF00483 Nucleotidyl transferase V428_19280 PF00854 POT family V428_19285 PF00072 Response regulator receiver domain V428_19315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_19320 PF02321 Outer membrane efflux protein V428_19330 PF01207 Dihydrouridine synthase (Dus) V428_19335 PF02954 Bacterial regulatory protein, Fis family V428_19340 PF01810 LysE type translocator V428_19365 PF01521 Iron-sulphur cluster biosynthesis V428_19375 PF00654 Voltage gated chloride channel V428_19380 PF00202 Aminotransferase class-III V428_19395 PF01569 PAP2 superfamily V428_19405 PF11849 Domain of unknown function (DUF3369) V428_19415 PF00893 Small Multidrug Resistance protein V428_19420 PF00893 Small Multidrug Resistance protein V428_19425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_19430 PF14814 Bifunctional transglycosylase second domain V428_19430 PF00912 Transglycosylase V428_19430 PF00905 Penicillin binding protein transpeptidase domain V428_19435 PF00271 Helicase conserved C-terminal domain V428_19435 PF04408 Helicase associated domain (HA2) V428_19435 PF08482 ATP-dependent helicase C-terminal V428_19435 PF00270 DEAD/DEAH box helicase V428_19445 PF17746 SfsA N-terminal OB domain V428_19445 PF03749 Sugar fermentation stimulation protein RE domain V428_19450 PF01258 Prokaryotic dksA/traR C4-type zinc finger V428_19455 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_19460 PF12626 Polymerase A arginine-rich C-terminus V428_19460 PF12627 Probable RNA and SrmB- binding site of polymerase A V428_19460 PF01743 Poly A polymerase head domain V428_19465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V428_19470 PF02548 Ketopantoate hydroxymethyltransferase V428_19475 PF02569 Pantoate-beta-alanine ligase V428_19495 PF01869 BadF/BadG/BcrA/BcrD ATPase family V428_19500 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component V428_19505 PF01061 ABC-2 type transporter V428_19510 PF00005 ABC transporter V428_19515 PF00156 Phosphoribosyl transferase domain V428_19520 PF00440 Bacterial regulatory proteins, tetR family V428_19525 PF02441 Flavoprotein V428_19530 PF08245 Mur ligase middle domain V428_19530 PF02875 Mur ligase family, glutamate ligase domain V428_19530 PF01225 Mur ligase family, catalytic domain V428_19535 PF00719 Inorganic pyrophosphatase V428_19550 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) V428_19565 PF00005 ABC transporter V428_19585 PF08447 PAS fold V428_19585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_19610 PF03600 Citrate transporter V428_19610 PF02080 TrkA-C domain V428_19615 PF00009 Elongation factor Tu GTP binding domain V428_19620 PF01507 Phosphoadenosine phosphosulfate reductase family V428_19625 PF10414 Sirohaem synthase dimerisation region V428_19625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_19625 PF14824 Sirohaem biosynthesis protein central V428_19630 PF01145 SPFH domain / Band 7 family V428_19630 PF16200 C-terminal region of band_7 V428_19635 PF01957 NfeD-like C-terminal, partner-binding V428_19640 PF00571 CBS domain V428_19640 PF01380 SIS domain V428_19645 PF00005 ABC transporter V428_19645 PF12848 ABC transporter V428_19655 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ V428_19660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_19660 PF03466 LysR substrate binding domain V428_19665 PF02525 Flavodoxin-like fold V428_19700 PF00561 alpha/beta hydrolase fold V428_19705 PF00474 Sodium:solute symporter family V428_19710 PF17969 L,D-transpeptidase C-terminal domain V428_19710 PF03734 L,D-transpeptidase catalytic domain V428_19715 PF00924 Mechanosensitive ion channel V428_19720 PF00871 Acetokinase family V428_19725 PF04074 YhcH/YjgK/YiaL V428_19735 PF07732 Multicopper oxidase V428_19735 PF00394 Multicopper oxidase V428_19735 PF07731 Multicopper oxidase V428_19740 PF01177 Asp/Glu/Hydantoin racemase V428_19745 PF01810 LysE type translocator V428_19755 PF00392 Bacterial regulatory proteins, gntR family V428_19755 PF00155 Aminotransferase class I and II V428_19780 PF00209 Sodium:neurotransmitter symporter family V428_19790 PF00209 Sodium:neurotransmitter symporter family V428_19810 PF07690 Major Facilitator Superfamily V428_19820 PF01037 Lrp/AsnC ligand binding domain V428_19835 PF01047 MarR family V428_19840 PF02566 OsmC-like protein V428_19845 PF16884 N-terminal domain of oxidoreductase V428_19845 PF00107 Zinc-binding dehydrogenase V428_19850 PF00293 NUDIX domain V428_19860 PF01641 SelR domain V428_19865 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_19865 PF00128 Alpha amylase, catalytic domain V428_19870 PF02806 Alpha amylase, C-terminal all-beta domain V428_19870 PF00128 Alpha amylase, catalytic domain V428_19870 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_19875 PF02446 4-alpha-glucanotransferase V428_19880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_19880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_19885 PF01263 Aldose 1-epimerase V428_19890 PF02445 Quinolinate synthetase A protein V428_19895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_19895 PF00672 HAMP domain V428_19940 PF16331 TolA binding protein trimerisation V428_19940 PF13174 Tetratricopeptide repeat V428_19945 PF00691 OmpA family V428_19950 PF07676 WD40-like Beta Propeller Repeat V428_19950 PF04052 TolB amino-terminal domain V428_19960 PF02472 Biopolymer transport protein ExbD/TolR V428_19965 PF01618 MotA/TolQ/ExbB proton channel family V428_19970 PF03061 Thioesterase superfamily V428_19975 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) V428_19980 PF08173 Membrane bound YbgT-like protein V428_19985 PF02322 Cytochrome bd terminal oxidase subunit II V428_19990 PF01654 Cytochrome bd terminal oxidase subunit I V428_19995 PF05491 RuvB C-terminal winged helix domain V428_19995 PF05496 Holliday junction DNA helicase RuvB P-loop domain V428_19995 PF17864 RuvB AAA lid domain V428_20000 PF07499 RuvA, C-terminal domain V428_20000 PF01330 RuvA N terminal domain V428_20005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_20005 PF00672 HAMP domain V428_20010 PF03129 Anticodon binding domain V428_20010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_20010 PF04073 Aminoacyl-tRNA editing domain V428_20015 PF00106 short chain dehydrogenase V428_20030 PF00378 Enoyl-CoA hydratase/isomerase V428_20035 PF10952 Protein of unknown function (DUF2753) V428_20045 PF00132 Bacterial transferase hexapeptide (six repeats) V428_20055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_20070 PF02594 Uncharacterised ACR, YggU family COG1872 V428_20075 PF02325 YGGT family V428_20080 PF14748 Pyrroline-5-carboxylate reductase dimerisation V428_20080 PF03807 NADP oxidoreductase coenzyme F420-dependent V428_20085 PF01168 Alanine racemase, N-terminal domain V428_20090 PF00437 Type II/IV secretion system protein V428_20095 PF00437 Type II/IV secretion system protein V428_20100 PF03883 Peroxide stress protein YaaA V428_20105 PF00270 DEAD/DEAH box helicase V428_20105 PF00271 Helicase conserved C-terminal domain V428_20110 PF05175 Methyltransferase small domain V428_20115 PF05525 Branched-chain amino acid transport protein V428_20120 PF05525 Branched-chain amino acid transport protein V428_20135 PF01475 Ferric uptake regulator family V428_20140 PF01207 Dihydrouridine synthase (Dus) V428_20155 PF00216 Bacterial DNA-binding protein V428_20160 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ V428_20165 PF07238 PilZ domain V428_20170 PF18073 Rubredoxin metal binding domain V428_20185 PF18429 Domain of unknown function (DUF5609) V428_20195 PF00990 Diguanylate cyclase, GGDEF domain V428_20195 PF00563 EAL domain V428_20195 PF08448 PAS fold V428_20195 PF08447 PAS fold V428_20195 PF13426 PAS domain V428_20195 PF05231 MASE1 V428_20200 PF01048 Phosphorylase superfamily V428_20205 PF01676 Metalloenzyme superfamily V428_20210 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain V428_20210 PF02885 Glycosyl transferase family, helical bundle domain V428_20210 PF00591 Glycosyl transferase family, a/b domain V428_20215 PF01791 DeoC/LacD family aldolase V428_20225 PF07670 Nucleoside recognition V428_20225 PF07662 Na+ dependent nucleoside transporter C-terminus V428_20225 PF01773 Na+ dependent nucleoside transporter N-terminus V428_20230 PF01026 TatD related DNase V428_20235 PF00114 Pilin (bacterial filament) V428_20235 PF07963 Prokaryotic N-terminal methylation motif V428_20240 PF05958 tRNA (Uracil-5-)-methyltransferase V428_20240 PF01938 TRAM domain V428_20245 PF00909 Ammonium Transporter Family V428_20250 PF02899 Phage integrase, N-terminal SAM-like domain V428_20250 PF00589 Phage integrase family V428_20260 PF01381 Helix-turn-helix V428_20260 PF00717 Peptidase S24-like V428_20275 PF06892 Phage regulatory protein CII (CP76) V428_20495 PF03739 Lipopolysaccharide export system permease LptF/LptG V428_20505 PF03739 Lipopolysaccharide export system permease LptF/LptG V428_20510 PF02789 Cytosol aminopeptidase family, N-terminal domain V428_20510 PF00883 Cytosol aminopeptidase family, catalytic domain V428_20515 PF04364 DNA polymerase III chi subunit, HolC V428_20520 PF08264 Anticodon-binding domain of tRNA V428_20520 PF00133 tRNA synthetases class I (I, L, M and V) V428_20520 PF10458 Valyl tRNA synthetase tRNA binding arm V428_20525 PF03471 Transporter associated domain V428_20525 PF01595 Cyclin M transmembrane N-terminal domain V428_20525 PF00571 CBS domain V428_20530 PF09335 SNARE associated Golgi protein V428_20535 PF00768 D-alanyl-D-alanine carboxypeptidase V428_20570 PF02599 Global regulator protein family V428_20575 PF01842 ACT domain V428_20575 PF00696 Amino acid kinase family V428_20575 PF13840 ACT domain V428_20580 PF02272 DHHA1 domain V428_20580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V428_20580 PF01411 tRNA synthetases class II (A) V428_20585 PF02631 RecX family V428_20590 PF00154 recA bacterial DNA recombination protein V428_20595 PF02464 Competence-damaged protein V428_20620 PF05190 MutS family domain IV V428_20620 PF05188 MutS domain II V428_20620 PF00488 MutS domain V V428_20620 PF01624 MutS domain I V428_20620 PF05192 MutS domain III V428_20625 PF02028 BCCT, betaine/carnitine/choline family transporter V428_20640 PF04222 Protein of unknown function (DUF416) V428_20645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_20650 PF08525 Opacity-associated protein A N-terminal motif V428_20650 PF01551 Peptidase family M23 V428_20650 PF01476 LysM domain V428_20670 PF01297 Zinc-uptake complex component A periplasmic V428_20675 PF00005 ABC transporter V428_20680 PF00950 ABC 3 transport family V428_20690 PF00892 EamA-like transporter family V428_20695 PF03167 Uracil DNA glycosylase superfamily V428_20700 PF00892 EamA-like transporter family V428_20710 PF01541 GIY-YIG catalytic domain V428_20725 PF04012 PspA/IM30 family V428_20730 PF01553 Acyltransferase V428_20755 PF00578 AhpC/TSA family V428_20760 PF00226 DnaJ domain V428_20760 PF00684 DnaJ central domain V428_20760 PF01556 DnaJ C terminal domain V428_20795 PF00521 DNA gyrase/topoisomerase IV, subunit A V428_20795 PF03989 DNA gyrase C-terminal domain, beta-propeller V428_20800 PF00204 DNA gyrase B V428_20800 PF00986 DNA gyrase B subunit, carboxyl terminus V428_20800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_20800 PF01751 Toprim domain V428_20805 PF04632 Fusaric acid resistance protein family V428_20810 PF00529 HlyD membrane-fusion protein of T1SS V428_20810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_20815 PF07869 Protein of unknown function (DUF1656) V428_20825 PF00293 NUDIX domain V428_20830 PF05728 Uncharacterised protein family (UPF0227) V428_20835 PF00149 Calcineurin-like phosphoesterase V428_20840 PF06853 Protein of unknown function (DUF1249) V428_20845 PF00293 NUDIX domain V428_20850 PF02321 Outer membrane efflux protein V428_20855 PF01467 Cytidylyltransferase-like V428_20855 PF00294 pfkB family carbohydrate kinase V428_20860 PF03279 Bacterial lipid A biosynthesis acyltransferase V428_20875 PF01865 Protein of unknown function DUF47 V428_20880 PF01384 Phosphate transporter family V428_20885 PF04073 Aminoacyl-tRNA editing domain V428_20905 PF00155 Aminotransferase class I and II V428_20905 PF00392 Bacterial regulatory proteins, gntR family V428_20910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_20910 PF03466 LysR substrate binding domain V428_20915 PF03788 LrgA family V428_20920 PF04172 LrgB-like family V428_20935 PF01743 Poly A polymerase head domain V428_20935 PF01966 HD domain V428_20935 PF12627 Probable RNA and SrmB- binding site of polymerase A V428_20945 PF01471 Putative peptidoglycan binding domain V428_20945 PF13401 AAA domain V428_20950 PF16537 Type II secretion system protein B V428_20955 PF10576 Iron-sulfur binding domain of endonuclease III V428_20955 PF00633 Helix-hairpin-helix motif V428_20955 PF00730 HhH-GPD superfamily base excision DNA repair protein V428_20955 PF14815 NUDIX domain V428_20960 PF04362 Bacterial Fe(2+) trafficking V428_20965 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain V428_20965 PF01464 Transglycosylase SLT domain V428_20970 PF04076 Bacterial OB fold (BOF) protein V428_20975 PF00657 GDSL-like Lipase/Acylhydrolase V428_20985 PF00691 OmpA family V428_20985 PF01389 OmpA-like transmembrane domain V428_20990 PF03886 ABC-type transport auxiliary lipoprotein component V428_20995 PF02470 MlaD protein V428_21000 PF04403 Paraquat-inducible protein A V428_21005 PF17209 Hfq protein V428_21010 PF13419 Haloacid dehalogenase-like hydrolase V428_21020 PF01590 GAF domain V428_21020 PF00563 EAL domain V428_21020 PF00360 Phytochrome region V428_21020 PF00990 Diguanylate cyclase, GGDEF domain V428_21025 PF00701 Dihydrodipicolinate synthetase family V428_21030 PF05175 Methyltransferase small domain V428_21030 PF08468 Methyltransferase small domain N-terminal V428_21035 PF00483 Nucleotidyl transferase V428_21040 PF08323 Starch synthase catalytic domain V428_21040 PF00534 Glycosyl transferases group 1 V428_21080 PF03553 Na+/H+ antiporter family V428_21085 PF03466 LysR substrate binding domain V428_21085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_21090 PF13416 Bacterial extracellular solute-binding protein V428_21095 PF08402 TOBE domain V428_21095 PF00005 ABC transporter V428_21100 PF00528 Binding-protein-dependent transport system inner membrane component V428_21105 PF00528 Binding-protein-dependent transport system inner membrane component V428_21110 PF00171 Aldehyde dehydrogenase family V428_21120 PF00892 EamA-like transporter family V428_21125 PF01037 Lrp/AsnC ligand binding domain V428_21130 PF14602 Hexapeptide repeat of succinyl-transferase V428_21130 PF12464 Maltose acetyltransferase V428_21135 PF11941 Domain of unknown function (DUF3459) V428_21135 PF00128 Alpha amylase, catalytic domain V428_21140 PF02378 Phosphotransferase system, EIIC V428_21140 PF00367 phosphotransferase system, EIIB V428_21145 PF00356 Bacterial regulatory proteins, lacI family V428_21160 PF00710 Asparaginase, N-terminal V428_21160 PF17763 Glutaminase/Asparaginase C-terminal domain V428_21175 PF02142 MGS-like domain V428_21185 PF00210 Ferritin-like domain V428_21200 PF08351 Domain of unknown function (DUF1726) V428_21200 PF13718 GNAT acetyltransferase 2 V428_21200 PF05127 Helicase V428_21200 PF17176 tRNA-binding domain V428_21205 PF00106 short chain dehydrogenase V428_21210 PF01584 CheW-like domain V428_21210 PF00072 Response regulator receiver domain V428_21255 PF02660 Glycerol-3-phosphate acyltransferase V428_21260 PF02152 Dihydroneopterin aldolase V428_21265 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V428_21275 PF07690 Major Facilitator Superfamily V428_21280 PF07683 Cobalamin synthesis protein cobW C-terminal domain V428_21280 PF02492 CobW/HypB/UreG, nucleotide-binding domain V428_21290 PF01810 LysE type translocator V428_21295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_21295 PF03466 LysR substrate binding domain V428_21305 PF06434 Aconitate hydratase 2 N-terminus V428_21305 PF11791 Aconitate B N-terminal domain V428_21305 PF00330 Aconitase family (aconitate hydratase) V428_21310 PF01734 Patatin-like phospholipase V428_21315 PF00672 HAMP domain V428_21315 PF12729 Four helix bundle sensory module for signal transduction V428_21315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_21320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_21320 PF00672 HAMP domain V428_21320 PF12729 Four helix bundle sensory module for signal transduction V428_21330 PF00563 EAL domain V428_21330 PF00990 Diguanylate cyclase, GGDEF domain V428_21330 PF05231 MASE1 V428_21330 PF08447 PAS fold V428_21330 PF08448 PAS fold V428_21330 PF13426 PAS domain V428_21335 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_21335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_21340 PF02817 e3 binding domain V428_21340 PF00364 Biotin-requiring enzyme V428_21340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_21345 PF17831 Pyruvate dehydrogenase E1 component middle domain V428_21345 PF00456 Transketolase, thiamine diphosphate binding domain V428_21350 PF07729 FCD domain V428_21350 PF00392 Bacterial regulatory proteins, gntR family V428_21355 PF01510 N-acetylmuramoyl-L-alanine amidase V428_21365 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain V428_21365 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain V428_21375 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V428_21375 PF00437 Type II/IV secretion system protein V428_21380 PF00482 Type II secretion system (T2SS), protein F V428_21385 PF01478 Type IV leader peptidase family V428_21385 PF06750 Bacterial Peptidase A24 N-terminal domain V428_21390 PF01121 Dephospho-CoA kinase V428_21395 PF07072 Cell division protein V428_21400 PF03884 DNA gyrase inhibitor YacG V428_21405 PF00293 NUDIX domain V428_21415 PF01043 SecA preprotein cross-linking domain V428_21415 PF02810 SEC-C motif V428_21415 PF07516 SecA Wing and Scaffold domain V428_21415 PF07517 SecA DEAD-like domain V428_21425 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase V428_21430 PF12327 FtsZ family, C-terminal domain V428_21430 PF00091 Tubulin/FtsZ family, GTPase domain V428_21435 PF02491 SHS2 domain inserted in FTSA V428_21440 PF08478 POTRA domain, FtsQ-type V428_21440 PF03799 Cell division protein FtsQ V428_21445 PF08245 Mur ligase middle domain V428_21445 PF02875 Mur ligase family, glutamate ligase domain V428_21445 PF01225 Mur ligase family, catalytic domain V428_21450 PF03033 Glycosyltransferase family 28 N-terminal domain V428_21450 PF04101 Glycosyltransferase family 28 C-terminal domain V428_21455 PF01098 Cell cycle protein V428_21460 PF02875 Mur ligase family, glutamate ligase domain V428_21460 PF08245 Mur ligase middle domain V428_21465 PF00953 Glycosyl transferase family 4 V428_21465 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 V428_21470 PF08245 Mur ligase middle domain V428_21470 PF02875 Mur ligase family, glutamate ligase domain V428_21470 PF01225 Mur ligase family, catalytic domain V428_21475 PF01225 Mur ligase family, catalytic domain V428_21475 PF08245 Mur ligase middle domain V428_21475 PF02875 Mur ligase family, glutamate ligase domain V428_21480 PF03717 Penicillin-binding Protein dimerisation domain V428_21480 PF00905 Penicillin binding protein transpeptidase domain V428_21485 PF04999 Cell division protein FtsL V428_21490 PF01795 MraW methylase family V428_21495 PF02381 MraZ protein, putative antitoxin-like V428_21500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_21505 PF04348 LppC putative lipoprotein V428_21510 PF02021 Uncharacterised protein family UPF0102 V428_21515 PF13580 SIS domain V428_21520 PF04972 BON domain V428_21525 PF04386 Stringent starvation protein B V428_21530 PF00043 Glutathione S-transferase, C-terminal domain V428_21530 PF02798 Glutathione S-transferase, N-terminal domain V428_21535 PF02167 Cytochrome C1 family V428_21540 PF00033 Cytochrome b/b6/petB V428_21540 PF00032 Cytochrome b(C-terminal)/b6/petD V428_21545 PF00355 Rieske [2Fe-2S] domain V428_21545 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal V428_21550 PF00380 Ribosomal protein S9/S16 V428_21555 PF00572 Ribosomal protein L13 V428_21560 PF03969 AFG1-like ATPase V428_21570 PF13180 PDZ domain V428_21570 PF00595 PDZ domain V428_21575 PF13180 PDZ domain V428_21605 PF01979 Amidohydrolase family V428_21610 PF03841 L-seryl-tRNA selenium transferase V428_21615 PF07071 KDGP aldolase V428_21620 PF05043 Mga helix-turn-helix domain V428_21620 PF00874 PRD domain V428_21620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_21620 PF08279 HTH domain V428_21625 PF00381 PTS HPr component phosphorylation site V428_21630 PF03668 P-loop ATPase protein family V428_21635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_21640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V428_21645 PF04963 Sigma-54 factor, core binding domain V428_21645 PF00309 Sigma-54 factor, Activator interacting domain (AID) V428_21645 PF04552 Sigma-54, DNA binding domain V428_21650 PF12399 Branched-chain amino acid ATP-binding cassette transporter V428_21650 PF00005 ABC transporter V428_21655 PF03968 OstA-like protein V428_21660 PF06835 Lipopolysaccharide-assembly, LptC-related V428_21670 PF01380 SIS domain V428_21670 PF00571 CBS domain V428_21675 PF00005 ABC transporter V428_21680 PF02405 Permease MlaE V428_21685 PF02470 MlaD protein V428_21690 PF05494 MlaC protein V428_21700 PF01722 BolA-like protein V428_21705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V428_21710 PF01523 Putative modulator of DNA gyrase V428_21715 PF04751 Protein of unknown function (DUF615) V428_21725 PF04363 Protein of unknown function (DUF496) V428_21760 PF07883 Cupin domain V428_21760 PF01381 Helix-turn-helix V428_21765 PF03594 Benzoate membrane transport protein V428_21775 PF02219 Methylenetetrahydrofolate reductase V428_21795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_21795 PF00672 HAMP domain V428_21800 PF03922 OmpW family V428_21815 PF17755 UvrA DNA-binding domain V428_21815 PF00005 ABC transporter V428_21815 PF17760 UvrA interaction domain V428_21820 PF00196 Bacterial regulatory proteins, luxR family V428_21825 PF00436 Single-strand binding protein family V428_21840 PF01545 Cation efflux family V428_21840 PF16916 Dimerisation domain of Zinc Transporter V428_21850 PF00313 'Cold-shock' DNA-binding domain V428_21855 PF07715 TonB-dependent Receptor Plug Domain V428_21855 PF00593 TonB dependent receptor V428_21860 PF00360 Phytochrome region V428_21860 PF00990 Diguanylate cyclase, GGDEF domain V428_21860 PF00563 EAL domain V428_21860 PF01590 GAF domain V428_21865 PF00672 HAMP domain V428_21865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_21865 PF00512 His Kinase A (phospho-acceptor) domain V428_21870 PF00072 Response regulator receiver domain V428_21870 PF00486 Transcriptional regulatory protein, C terminal V428_21895 PF17151 Periplasmic sensor domain V428_21895 PF00990 Diguanylate cyclase, GGDEF domain V428_21905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_21915 PF13538 UvrD-like helicase C-terminal domain V428_21920 PF12705 PD-(D/E)XK nuclease superfamily V428_21920 PF00580 UvrD/REP helicase N-terminal domain V428_21920 PF13361 UvrD-like helicase C-terminal domain V428_21925 PF17946 RecC C-terminal domain V428_21930 PF07681 DoxX V428_21935 PF02678 Pirin V428_21935 PF17954 Quercetinase C-terminal cupin domain V428_21945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_21945 PF03466 LysR substrate binding domain V428_21955 PF07702 UTRA domain V428_21955 PF00392 Bacterial regulatory proteins, gntR family V428_21970 PF00528 Binding-protein-dependent transport system inner membrane component V428_21980 PF00005 ABC transporter V428_21980 PF08402 TOBE domain V428_21990 PF17158 Membrane-associated sensor, integral membrane domain V428_21990 PF00990 Diguanylate cyclase, GGDEF domain V428_22010 PF00583 Acetyltransferase (GNAT) family V428_22015 PF00199 Catalase V428_22015 PF06628 Catalase-related immune-responsive V428_22040 PF00293 NUDIX domain V428_22045 PF01594 AI-2E family transporter V428_22050 PF00106 short chain dehydrogenase V428_22055 PF04371 Porphyromonas-type peptidyl-arginine deiminase V428_22060 PF03466 LysR substrate binding domain V428_22060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_22065 PF02954 Bacterial regulatory protein, Fis family V428_22065 PF00158 Sigma-54 interaction domain V428_22065 PF00989 PAS fold V428_22070 PF00465 Iron-containing alcohol dehydrogenase V428_22075 PF00391 PEP-utilising enzyme, mobile domain V428_22075 PF05524 PEP-utilising enzyme, N-terminal V428_22075 PF03610 PTS system fructose IIA component V428_22075 PF00381 PTS HPr component phosphorylation site V428_22080 PF02734 DAK2 domain V428_22085 PF02733 Dak1 domain V428_22090 PF00860 Permease family V428_22140 PF03764 Elongation factor G, domain IV V428_22140 PF00009 Elongation factor Tu GTP binding domain V428_22140 PF03144 Elongation factor Tu domain 2 V428_22140 PF00679 Elongation factor G C-terminus V428_22140 PF14492 Elongation Factor G, domain II V428_22145 PF00177 Ribosomal protein S7p/S5e V428_22150 PF00164 Ribosomal protein S12/S23 V428_22155 PF04077 DsrH like protein V428_22160 PF02635 DsrE/DsrF-like family V428_22165 PF02635 DsrE/DsrF-like family V428_22170 PF01042 Endoribonuclease L-PSP V428_22175 PF13309 HTH domain V428_22175 PF08348 YheO-like PAS domain V428_22185 PF04997 RNA polymerase Rpb1, domain 1 V428_22185 PF00623 RNA polymerase Rpb1, domain 2 V428_22185 PF04983 RNA polymerase Rpb1, domain 3 V428_22185 PF05000 RNA polymerase Rpb1, domain 4 V428_22185 PF04998 RNA polymerase Rpb1, domain 5 V428_22190 PF04563 RNA polymerase beta subunit V428_22190 PF10385 RNA polymerase beta subunit external 1 domain V428_22190 PF04565 RNA polymerase Rpb2, domain 3 V428_22190 PF04560 RNA polymerase Rpb2, domain 7 V428_22190 PF00562 RNA polymerase Rpb2, domain 6 V428_22190 PF04561 RNA polymerase Rpb2, domain 2 V428_22195 PF16320 Ribosomal protein L7/L12 dimerisation domain V428_22195 PF00542 Ribosomal protein L7/L12 C-terminal domain V428_22200 PF00466 Ribosomal protein L10 V428_22205 PF00687 Ribosomal protein L1p/L10e family V428_22210 PF03946 Ribosomal protein L11, N-terminal domain V428_22210 PF00298 Ribosomal protein L11, RNA binding domain V428_22215 PF02357 Transcription termination factor nusG V428_22215 PF00467 KOW motif V428_22220 PF00584 SecE/Sec61-gamma subunits of protein translocation complex V428_22245 PF00485 Phosphoribulokinase / Uridine kinase family V428_22250 PF02237 Biotin protein ligase C terminal domain V428_22250 PF03099 Biotin/lipoate A/B protein ligase family V428_22250 PF08279 HTH domain V428_22255 PF01565 FAD binding domain V428_22255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain V428_22260 PF02080 TrkA-C domain V428_22260 PF02254 TrkA-N domain V428_22265 PF02386 Cation transport protein V428_22270 PF12852 Cupin V428_22270 PF12833 Helix-turn-helix domain V428_22285 PF01751 Toprim domain V428_22285 PF01131 DNA topoisomerase V428_22290 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_22295 PF01568 Molydopterin dinucleotide binding domain V428_22295 PF18364 Molybdopterin oxidoreductase N-terminal domain V428_22295 PF00384 Molybdopterin oxidoreductase V428_22305 PF08918 PhoQ Sensor V428_22305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_22310 PF00486 Transcriptional regulatory protein, C terminal V428_22310 PF00072 Response regulator receiver domain V428_22325 PF01794 Ferric reductase like transmembrane component V428_22330 PF00174 Oxidoreductase molybdopterin binding domain V428_22340 PF06496 Protein of unknown function (DUF1097) V428_22345 PF00072 Response regulator receiver domain V428_22345 PF00158 Sigma-54 interaction domain V428_22355 PF00512 His Kinase A (phospho-acceptor) domain V428_22355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_22375 PF00478 IMP dehydrogenase / GMP reductase domain V428_22375 PF00571 CBS domain V428_22380 PF10063 Uncharacterized integral membrane protein (DUF2301) V428_22390 PF01037 Lrp/AsnC ligand binding domain V428_22395 PF03590 Aspartate-ammonia ligase V428_22405 PF10431 C-terminal, D2-small domain, of ClpB protein V428_22405 PF07724 AAA domain (Cdc48 subfamily) V428_22405 PF00004 ATPase family associated with various cellular activities (AAA) V428_22405 PF17871 AAA lid domain V428_22405 PF02861 Clp amino terminal domain, pathogenicity island component V428_22415 PF01479 S4 domain V428_22415 PF00849 RNA pseudouridylate synthase V428_22420 PF13525 Outer membrane lipoprotein V428_22425 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_22425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_22430 PF00375 Sodium:dicarboxylate symporter family V428_22435 PF03313 Serine dehydratase alpha chain V428_22440 PF08348 YheO-like PAS domain V428_22440 PF13309 HTH domain V428_22450 PF02233 NAD(P) transhydrogenase beta subunit V428_22455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V428_22455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V428_22455 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch V428_22460 PF00465 Iron-containing alcohol dehydrogenase V428_22465 PF06719 AraC-type transcriptional regulator N-terminus V428_22465 PF12833 Helix-turn-helix domain V428_22470 PF08212 Lipocalin-like domain V428_22475 PF00672 HAMP domain V428_22475 PF02743 Cache domain V428_22475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_22480 PF02666 Phosphatidylserine decarboxylase V428_22495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_22495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_22500 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain V428_22500 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain V428_22505 PF02863 Arginine repressor, C-terminal domain V428_22505 PF01316 Arginine repressor, DNA binding domain V428_22510 PF03606 C4-dicarboxylate anaerobic carrier V428_22515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_22515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_22520 PF00696 Amino acid kinase family V428_22545 PF02743 Cache domain V428_22545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_22545 PF00672 HAMP domain V428_22550 PF02653 Branched-chain amino acid transport system / permease component V428_22555 PF00005 ABC transporter V428_22560 PF13407 Periplasmic binding protein domain V428_22565 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V428_22565 PF02837 Glycosyl hydrolases family 2, sugar binding domain V428_22565 PF00703 Glycosyl hydrolases family 2 V428_22565 PF16353 Domain of unknown function(DUF4981) V428_22565 PF02929 Beta galactosidase small chain V428_22570 PF00356 Bacterial regulatory proteins, lacI family V428_22575 PF16363 GDP-mannose 4,6 dehydratase V428_22580 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain V428_22580 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain V428_22585 PF10509 Galactokinase galactose-binding signature V428_22585 PF00288 GHMP kinases N terminal domain V428_22585 PF08544 GHMP kinases C terminal V428_22590 PF01263 Aldose 1-epimerase V428_22595 PF00248 Aldo/keto reductase family V428_22600 PF02673 Bacitracin resistance protein BacA V428_22605 PF12973 ChrR Cupin-like domain V428_22610 PF04542 Sigma-70 region 2 V428_22610 PF04545 Sigma-70, region 4 V428_22620 PF05746 DALR anticodon binding domain V428_22620 PF00750 tRNA synthetases class I (R) V428_22620 PF03485 Arginyl tRNA synthetase N terminal domain V428_22630 PF00227 Proteasome subunit V428_22635 PF10431 C-terminal, D2-small domain, of ClpB protein V428_22635 PF00004 ATPase family associated with various cellular activities (AAA) V428_22635 PF07724 AAA domain (Cdc48 subfamily) V428_22640 PF07690 Major Facilitator Superfamily V428_22645 PF03466 LysR substrate binding domain V428_22645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_22650 PF18267 Rubredoxin NAD+ reductase C-terminal domain V428_22650 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_22650 PF04324 BFD-like [2Fe-2S] binding domain V428_22650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_22650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_22660 PF13806 Rieske-like [2Fe-2S] domain V428_22665 PF01226 Formate/nitrite transporter V428_22670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_22670 PF14824 Sirohaem biosynthesis protein central V428_22670 PF10414 Sirohaem synthase dimerisation region V428_22675 PF00571 CBS domain V428_22675 PF03448 MgtE intracellular N domain V428_22675 PF01769 Divalent cation transporter V428_22680 PF00672 HAMP domain V428_22680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_22685 PF03737 Aldolase/RraA V428_22690 PF02592 Putative vitamin uptake transporter V428_22700 PF02696 Uncharacterized ACR, YdiU/UPF0061 family V428_22705 PF00034 Cytochrome c V428_22710 PF00270 DEAD/DEAH box helicase V428_22710 PF00271 Helicase conserved C-terminal domain V428_22710 PF00570 HRDC domain V428_22710 PF16124 RecQ zinc-binding V428_22710 PF09382 RQC domain V428_22715 PF03061 Thioesterase superfamily V428_22730 PF03475 3-alpha domain V428_22730 PF03473 MOSC domain V428_22735 PF00528 Binding-protein-dependent transport system inner membrane component V428_22740 PF00528 Binding-protein-dependent transport system inner membrane component V428_22745 PF08402 TOBE domain V428_22745 PF00005 ABC transporter V428_22750 PF13416 Bacterial extracellular solute-binding protein V428_22755 PF13416 Bacterial extracellular solute-binding protein V428_22760 PF00202 Aminotransferase class-III V428_22765 PF00120 Glutamine synthetase, catalytic domain V428_22770 PF01258 Prokaryotic dksA/traR C4-type zinc finger V428_22785 PF05981 CreA protein V428_22790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_22790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_22795 PF00012 Hsp70 protein V428_22810 PF00128 Alpha amylase, catalytic domain V428_22810 PF02903 Alpha amylase, N-terminal ig-like domain V428_22825 PF05958 tRNA (Uracil-5-)-methyltransferase V428_22830 PF00486 Transcriptional regulatory protein, C terminal V428_22830 PF00072 Response regulator receiver domain V428_22835 PF00512 His Kinase A (phospho-acceptor) domain V428_22835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_22835 PF00672 HAMP domain V428_22845 PF00390 Malic enzyme, N-terminal domain V428_22845 PF03949 Malic enzyme, NAD binding domain V428_22850 PF11066 Protein of unknown function (DUF2867) V428_22850 PF13460 NAD(P)H-binding V428_22855 PF01197 Ribosomal protein L31 V428_22860 PF18319 PriA DNA helicase Cys-rich region (CRR) domain V428_22860 PF00270 DEAD/DEAH box helicase V428_22860 PF00271 Helicase conserved C-terminal domain V428_22860 PF17764 3′ DNA-binding domain (3′BD) V428_22860 PF18074 Primosomal protein N C-terminal domain V428_22870 PF01389 OmpA-like transmembrane domain V428_22870 PF00691 OmpA family V428_22875 PF00585 C-terminal regulatory domain of Threonine dehydratase V428_22875 PF00291 Pyridoxal-phosphate dependent enzyme V428_22880 PF00920 Dehydratase family V428_22885 PF01063 Amino-transferase class IV V428_22895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_22895 PF00205 Thiamine pyrophosphate enzyme, central domain V428_22895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_22900 PF13335 Magnesium chelatase, subunit ChlI C-terminal V428_22900 PF01078 Magnesium chelatase, subunit ChlI V428_22905 PF01553 Acyltransferase V428_22910 PF01553 Acyltransferase V428_22915 PF04463 Protein of unknown function (DUF523) V428_22925 PF00857 Isochorismatase family V428_22930 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain V428_22930 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family V428_22940 PF00005 ABC transporter V428_22945 PF00528 Binding-protein-dependent transport system inner membrane component V428_22950 PF01323 DSBA-like thioredoxin domain V428_22955 PF01636 Phosphotransferase enzyme family V428_22960 PF12801 4Fe-4S binding domain V428_22960 PF13746 4Fe-4S dicluster domain V428_22960 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase V428_22965 PF06288 Protein of unknown function (DUF1040) V428_22970 PF00360 Phytochrome region V428_22970 PF00563 EAL domain V428_22970 PF00990 Diguanylate cyclase, GGDEF domain V428_22970 PF01590 GAF domain V428_22975 PF09278 MerR, DNA binding V428_22975 PF00376 MerR family regulatory protein V428_22980 PF00403 Heavy-metal-associated domain V428_22985 PF00156 Phosphoribosyl transferase domain V428_22990 PF01138 3' exoribonuclease family, domain 1 V428_22990 PF03725 3' exoribonuclease family, domain 2 V428_22995 PF03755 YicC-like family, N-terminal region V428_22995 PF08340 Domain of unknown function (DUF1732) V428_23015 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) V428_23030 PF01370 NAD dependent epimerase/dehydratase family V428_23035 PF00440 Bacterial regulatory proteins, tetR family V428_23035 PF08360 QacR-like protein, C-terminal region V428_23040 PF00155 Aminotransferase class I and II V428_23045 PF00107 Zinc-binding dehydrogenase V428_23045 PF08240 Alcohol dehydrogenase GroES-like domain V428_23050 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_23055 PF00563 EAL domain V428_23055 PF00990 Diguanylate cyclase, GGDEF domain V428_23055 PF03707 Bacterial signalling protein N terminal repeat V428_23060 PF00580 UvrD/REP helicase N-terminal domain V428_23060 PF13361 UvrD-like helicase C-terminal domain V428_23065 PF00266 Aminotransferase class-V V428_23070 PF02657 Fe-S metabolism associated domain V428_23075 PF00899 ThiF family V428_23110 PF03544 Gram-negative bacterial TonB protein C-terminal V428_23115 PF02472 Biopolymer transport protein ExbD/TolR V428_23120 PF01618 MotA/TolQ/ExbB proton channel family V428_23125 PF01618 MotA/TolQ/ExbB proton channel family V428_23135 PF03472 Autoinducer binding domain V428_23135 PF00196 Bacterial regulatory proteins, luxR family V428_23140 PF01380 SIS domain V428_23145 PF08220 DeoR-like helix-turn-helix domain V428_23145 PF00455 DeoR C terminal sensor domain V428_23150 PF00486 Transcriptional regulatory protein, C terminal V428_23150 PF00072 Response regulator receiver domain V428_23155 PF00672 HAMP domain V428_23155 PF00512 His Kinase A (phospho-acceptor) domain V428_23155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_23160 PF00905 Penicillin binding protein transpeptidase domain V428_23165 PF06123 Inner membrane protein CreD V428_23170 PF00132 Bacterial transferase hexapeptide (six repeats) V428_23170 PF12804 MobA-like NTP transferase domain V428_23170 PF14602 Hexapeptide repeat of succinyl-transferase V428_23175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain V428_23175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain V428_23180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_23180 PF02874 ATP synthase alpha/beta family, beta-barrel domain V428_23185 PF00231 ATP synthase V428_23190 PF02874 ATP synthase alpha/beta family, beta-barrel domain V428_23190 PF00306 ATP synthase alpha/beta chain, C terminal domain V428_23190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_23195 PF00213 ATP synthase delta (OSCP) subunit V428_23200 PF00430 ATP synthase B/B' CF(0) V428_23205 PF00137 ATP synthase subunit C V428_23210 PF00119 ATP synthase A chain V428_23220 PF17762 HTH domain found in ParB protein V428_23220 PF02195 ParB-like nuclease domain V428_23225 PF13614 AAA domain V428_23230 PF02527 rRNA small subunit methyltransferase G V428_23235 PF01134 Glucose inhibited division protein A V428_23235 PF13932 GidA associated domain V428_23240 PF00258 Flavodoxin V428_23245 PF00593 TonB dependent receptor V428_23245 PF07715 TonB-dependent Receptor Plug Domain V428_23250 PF00005 ABC transporter V428_23255 PF00005 ABC transporter V428_23265 PF01032 FecCD transport family V428_23270 PF10396 GTP-binding protein TrmE N-terminus V428_23270 PF12631 MnmE helical domain V428_23270 PF01926 50S ribosome-binding GTPase V428_23275 PF02096 60Kd inner membrane protein V428_23275 PF14849 YidC periplasmic domain V428_23280 PF00825 Ribonuclease P V428_23285 PF00468 Ribosomal protein L34 V428_23295 PF00528 Binding-protein-dependent transport system inner membrane component V428_23300 PF00497 Bacterial extracellular solute-binding proteins, family 3