V428_00005 PF00308 Bacterial dnaA protein V428_00005 PF08299 Bacterial dnaA protein helix-turn-helix V428_00005 PF11638 DnaA N-terminal domain V428_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain V428_00010 PF02767 DNA polymerase III beta subunit, central domain V428_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain V428_00015 PF02463 RecF/RecN/SMC N terminal domain V428_00020 PF00204 DNA gyrase B V428_00020 PF00986 DNA gyrase B subunit, carboxyl terminus V428_00020 PF01751 Toprim domain V428_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_00030 PF08279 HTH domain V428_00030 PF13280 V428_00030 V428_00035 PF00011 Hsp20/alpha crystallin family V428_00040 PF00011 Hsp20/alpha crystallin family V428_00045 PF00155 Aminotransferase class I and II V428_00055 PF02311 AraC-like ligand binding domain V428_00055 PF12833 Helix-turn-helix domain V428_00060 PF07690 Major Facilitator Superfamily V428_00065 PF00072 Response regulator receiver domain V428_00065 PF00486 Transcriptional regulatory protein, C terminal V428_00070 PF00512 His Kinase A (phospho-acceptor) domain V428_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain V428_00070 PF13493 Domain of unknown function (DUF4118) V428_00075 PF02669 V428_00075 V428_00085 PF00122 E1-E2 ATPase V428_00085 PF00702 haloacid dehalogenase-like hydrolase V428_00090 PF03814 V428_00090 V428_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00100 PF13426 PAS domain V428_00100 PF17149 V428_00100 V428_00105 PF00873 AcrB/AcrD/AcrF family V428_00110 PF00529 HlyD family secretion protein V428_00110 PF16576 V428_00110 V428_00115 PF00440 Bacterial regulatory proteins, tetR family V428_00115 PF16295 V428_00115 V428_00140 PF00652 Ricin-type beta-trefoil lectin domain V428_00145 PF00224 Pyruvate kinase, barrel domain V428_00150 PF07690 Major Facilitator Superfamily V428_00155 PF13343 Bacterial extracellular solute-binding protein V428_00160 PF00512 His Kinase A (phospho-acceptor) domain V428_00160 PF00672 HAMP domain V428_00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00160 PF13426 PAS domain V428_00165 PF00072 Response regulator receiver domain V428_00165 PF02954 Bacterial regulatory protein, Fis family V428_00165 PF14532 Sigma-54 interaction domain V428_00175 PF08282 haloacid dehalogenase-like hydrolase V428_00180 PF12146 Putative lysophospholipase V428_00185 PF00132 Bacterial transferase hexapeptide (six repeats) V428_00195 PF02824 TGS domain V428_00195 PF04607 Region found in RelA / SpoT proteins V428_00195 PF13291 ACT domain V428_00195 PF13328 HD domain V428_00200 PF01192 RNA polymerase Rpb6 V428_00205 PF00625 Guanylate kinase V428_00210 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_00215 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family V428_00220 PF00990 GGDEF domain V428_00220 PF08447 PAS fold V428_00225 PF00892 EamA-like transporter family V428_00240 PF00892 EamA-like transporter family V428_00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_00245 PF03466 LysR substrate binding domain V428_00250 PF00579 tRNA synthetases class I (W and Y) V428_00255 PF00582 Universal stress protein family V428_00260 PF07055 Enoyl reductase FAD binding domain V428_00260 PF12241 Trans-2-enoyl-CoA reductase catalytic region V428_00260 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V428_00265 PF00990 GGDEF domain V428_00270 PF00210 Ferritin-like domain V428_00275 PF03486 HI0933-like protein V428_00280 PF08722 TnsA endonuclease N terminal V428_00295 PF13401 AAA domain V428_00300 PF07804 HipA-like C-terminal domain V428_00300 PF13657 HipA N-terminal domain V428_00305 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) V428_00305 PF04851 Type III restriction enzyme, res subunit V428_00305 PF12008 Type I restriction and modification enzyme - subunit R C terminal V428_00315 PF04326 Divergent AAA domain V428_00315 PF13749 ATP-dependent DNA helicase recG C-terminal V428_00320 PF01420 Type I restriction modification DNA specificity domain V428_00325 PF13166 V428_00325 V428_00330 PF02384 N-6 DNA Methylase V428_00330 PF12161 HsdM N-terminal domain V428_00355 PF07690 Major Facilitator Superfamily V428_00360 PF01810 V428_00360 V428_00365 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V428_00375 PF15976 V428_00375 V428_00375 PF16967 V428_00375 V428_00385 PF16449 V428_00385 V428_00390 PF00072 Response regulator receiver domain V428_00390 PF00196 Bacterial regulatory proteins, luxR family V428_00395 PF00072 Response regulator receiver domain V428_00395 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_00395 PF00512 His Kinase A (phospho-acceptor) domain V428_00395 PF01627 Hpt domain V428_00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00405 PF06580 V428_00405 V428_00405 PF07694 5TMR of 5TMR-LYT V428_00410 PF00072 Response regulator receiver domain V428_00410 PF04397 LytTr DNA-binding domain V428_00415 PF07690 Major Facilitator Superfamily V428_00420 PF02222 ATP-grasp domain V428_00425 PF00731 AIR carboxylase V428_00435 PF05982 V428_00435 V428_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_00440 PF03466 LysR substrate binding domain V428_00445 PF00593 TonB dependent receptor V428_00445 PF07715 TonB-dependent Receptor Plug Domain V428_00450 PF01177 Asp/Glu/Hydantoin racemase V428_00455 PF00076 RNA recognition motif V428_00490 PF07969 Amidohydrolase family V428_00495 PF02537 V428_00495 V428_00500 PF01209 ubiE/COQ5 methyltransferase family V428_00505 PF02036 SCP-2 sterol transfer family V428_00510 PF03109 V428_00510 V428_00515 PF02416 mttA/Hcf106 family V428_00520 PF02416 mttA/Hcf106 family V428_00525 PF00902 Sec-independent protein translocase protein (TatC) V428_00530 PF01026 TatD related DNase V428_00535 PF00490 Delta-aminolevulinic acid dehydratase V428_00540 PF01432 Peptidase family M3 V428_00545 PF00563 EAL domain V428_00545 PF00989 PAS fold V428_00545 PF00990 GGDEF domain V428_00545 PF13426 PAS domain V428_00550 PF04445 Putative SAM-dependent methyltransferase V428_00555 PF07073 Modulator of Rho-dependent transcription termination (ROF) V428_00560 PF14321 V428_00560 V428_00565 PF02541 Ppx/GppA phosphatase family V428_00570 PF00270 DEAD/DEAH box helicase V428_00570 PF00271 Helicase conserved C-terminal domain V428_00575 PF00085 Thioredoxin V428_00580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_00580 PF07497 Rho termination factor, RNA-binding domain V428_00580 PF07498 Rho termination factor, N-terminal domain V428_00590 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase V428_00595 PF00175 Oxidoreductase NAD-binding domain V428_00600 PF04380 V428_00600 V428_00605 PF12262 V428_00605 V428_00610 PF01694 Rhomboid family V428_00610 PF12122 Protein of unknown function (DUF3582) V428_00615 PF00581 Rhodanese-like domain V428_00620 PF01810 V428_00620 V428_00625 PF02311 AraC-like ligand binding domain V428_00625 PF12833 Helix-turn-helix domain V428_00630 PF00005 ABC transporter V428_00635 PF00005 ABC transporter V428_00635 PF12399 Branched-chain amino acid ATP-binding cassette transporter V428_00640 PF02653 V428_00640 V428_00640 PF11862 V428_00640 V428_00645 PF02653 V428_00645 V428_00650 PF13458 Periplasmic binding protein V428_00655 PF00356 Bacterial regulatory proteins, lacI family V428_00655 PF13377 Periplasmic binding protein-like domain V428_00660 PF02056 Family 4 glycosyl hydrolase V428_00660 PF11975 Family 4 glycosyl hydrolase C-terminal domain V428_00665 PF00367 phosphotransferase system, EIIB V428_00665 PF02378 Phosphotransferase system, EIIC V428_00670 PF00392 Bacterial regulatory proteins, gntR family V428_00670 PF07702 UTRA domain V428_00675 PF00158 Sigma-54 interaction domain V428_00675 PF01590 GAF domain V428_00680 PF00258 Flavodoxin V428_00680 PF00301 Rubredoxin V428_00680 PF00753 Metallo-beta-lactamase superfamily V428_00685 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_00690 PF09313 Domain of unknown function (DUF1971) V428_00695 PF12801 V428_00695 V428_00700 PF03222 Tryptophan/tyrosine permease family V428_00705 PF10517 V428_00705 V428_00720 PF13671 AAA domain V428_00735 PF02092 V428_00735 V428_00735 PF05746 DALR anticodon binding domain V428_00740 PF02091 Glycyl-tRNA synthetase alpha subunit V428_00745 PF03352 Methyladenine glycosylase V428_00750 PF00857 Isochorismatase family V428_00755 PF00691 OmpA family V428_00755 PF13488 V428_00755 V428_00760 PF01042 Endoribonuclease L-PSP V428_00765 PF01206 Sulfurtransferase TusA V428_00775 PF01547 Bacterial extracellular solute-binding protein V428_00780 PF00512 His Kinase A (phospho-acceptor) domain V428_00780 PF00672 HAMP domain V428_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_00785 PF00072 Response regulator receiver domain V428_00785 PF00486 Transcriptional regulatory protein, C terminal V428_00790 PF00108 Thiolase, N-terminal domain V428_00790 PF02803 Thiolase, C-terminal domain V428_00795 PF00378 Enoyl-CoA hydratase/isomerase family V428_00795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V428_00795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V428_00800 PF00501 AMP-binding enzyme V428_00800 PF13193 AMP-binding enzyme C-terminal domain V428_00800 PF16177 V428_00800 V428_00805 PF00557 Metallopeptidase family M24 V428_00810 PF01205 Uncharacterized protein family UPF0029 V428_00810 PF09186 Domain of unknown function (DUF1949) V428_00815 PF02386 Cation transport protein V428_00820 PF12724 Flavodoxin domain V428_00845 PF00583 Acetyltransferase (GNAT) family V428_00845 PF13380 CoA binding domain V428_00845 PF13549 ATP-grasp domain V428_00845 PF13607 Succinyl-CoA ligase like flavodoxin domain V428_00855 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_00860 PF03466 LysR substrate binding domain V428_00865 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain V428_00865 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain V428_00870 PF00342 Phosphoglucose isomerase V428_00880 PF00924 Mechanosensitive ion channel V428_00880 PF05552 Conserved TM helix V428_00885 PF00440 Bacterial regulatory proteins, tetR family V428_00890 PF00692 dUTPase V428_00895 PF02441 Flavoprotein V428_00895 PF04127 DNA / pantothenate metabolism flavoprotein V428_00900 PF04002 RadC-like JAB domain V428_00905 PF00830 Ribosomal L28 family V428_00910 PF00471 Ribosomal protein L33 V428_00920 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain V428_00920 PF06827 Zinc finger found in FPG and IleRS V428_00920 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain V428_00925 PF04393 V428_00925 V428_00930 PF01467 Cytidylyltransferase V428_00935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_00940 PF00535 Glycosyl transferase family 2 V428_00945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_00950 PF00534 Glycosyl transferases group 1 V428_00950 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) V428_00955 PF03611 V428_00955 V428_00960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_00965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_00970 PF00356 Bacterial regulatory proteins, lacI family V428_00970 PF13377 Periplasmic binding protein-like domain V428_00975 PF00107 Zinc-binding dehydrogenase V428_00975 PF08240 Alcohol dehydrogenase GroES-like domain V428_00985 PF10973 V428_00985 V428_00995 PF03748 V428_00995 V428_01000 PF04345 Chorismate lyase V428_01005 PF01040 UbiA prenyltransferase family V428_01010 PF01553 Acyltransferase V428_01015 PF00717 Peptidase S24-like V428_01015 PF01726 LexA DNA binding domain V428_01025 PF02630 SCO1/SenC V428_01030 PF01554 MatE V428_01035 PF00588 SpoU rRNA Methylase family V428_01040 PF00512 His Kinase A (phospho-acceptor) domain V428_01040 PF00672 HAMP domain V428_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_01045 PF00072 Response regulator receiver domain V428_01045 PF00486 Transcriptional regulatory protein, C terminal V428_01050 PF01545 Cation efflux family V428_01050 PF16916 V428_01050 V428_01055 PF00132 Bacterial transferase hexapeptide (six repeats) V428_01055 PF06426 Serine acetyltransferase, N-terminal V428_01065 PF06005 Protein of unknown function (DUF904) V428_01070 PF01965 DJ-1/PfpI family V428_01075 PF00476 DNA polymerase family A V428_01075 PF01367 5'-3' exonuclease, C-terminal SAM fold V428_01075 PF01612 3'-5' exonuclease V428_01075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V428_01080 PF00132 Bacterial transferase hexapeptide (six repeats) V428_01120 PF00356 Bacterial regulatory proteins, lacI family V428_01120 PF13377 Periplasmic binding protein-like domain V428_01125 PF00703 Glycosyl hydrolases family 2 V428_01125 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V428_01125 PF02837 Glycosyl hydrolases family 2, sugar binding domain V428_01125 PF02929 Beta galactosidase small chain V428_01125 PF16353 V428_01125 V428_01130 PF04074 Domain of unknown function (DUF386) V428_01135 PF13520 Amino acid permease V428_01140 PF01588 Putative tRNA binding domain V428_01145 PF13520 Amino acid permease V428_01150 PF13593 SBF-like CPA transporter family (DUF4137) V428_01155 PF03781 Sulfatase-modifying factor enzyme 1 V428_01155 PF08241 Methyltransferase domain V428_01155 PF12867 DinB superfamily V428_01160 PF10988 Protein of unknown function (DUF2807) V428_01165 PF00756 Putative esterase V428_01170 PF00107 Zinc-binding dehydrogenase V428_01170 PF08240 Alcohol dehydrogenase GroES-like domain V428_01175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01175 PF03466 LysR substrate binding domain V428_01180 PF02653 V428_01180 V428_01185 PF02653 V428_01185 V428_01195 PF00005 ABC transporter V428_01200 PF02608 Basic membrane protein V428_01205 PF00580 UvrD/REP helicase N-terminal domain V428_01205 PF13361 UvrD-like helicase C-terminal domain V428_01215 PF01797 Transposase IS200 like V428_01220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01220 PF03466 LysR substrate binding domain V428_01230 PF14001 V428_01230 V428_01235 PF09351 Domain of unknown function (DUF1993) V428_01240 PF08327 Activator of Hsp90 ATPase homolog 1-like protein V428_01245 PF07883 Cupin domain V428_01250 PF11769 V428_01250 V428_01255 PF06206 CpeT/CpcT family (DUF1001) V428_01260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01260 PF03466 LysR substrate binding domain V428_01265 PF01810 V428_01265 V428_01270 PF04143 V428_01270 V428_01275 PF00122 E1-E2 ATPase V428_01275 PF00689 Cation transporting ATPase, C-terminus V428_01275 PF00690 Cation transporter/ATPase, N-terminus V428_01275 PF00702 haloacid dehalogenase-like hydrolase V428_01280 PF01810 V428_01280 V428_01285 PF02311 AraC-like ligand binding domain V428_01285 PF12833 Helix-turn-helix domain V428_01290 PF00892 EamA-like transporter family V428_01300 PF00171 Aldehyde dehydrogenase family V428_01305 PF01381 Helix-turn-helix V428_01305 PF07883 Cupin domain V428_01310 PF00202 Aminotransferase class-III V428_01320 PF00117 Glutamine amidotransferase class-I V428_01325 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V428_01325 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V428_01330 PF00294 pfkB family carbohydrate kinase V428_01335 PF02082 Transcriptional regulator V428_01340 PF13187 4Fe-4S dicluster domain V428_01355 PF02386 Cation transport protein V428_01360 PF02080 TrkA-C domain V428_01360 PF02254 TrkA-N domain V428_01365 PF01029 NusB family V428_01365 PF01189 NOL1/NOP2/sun family V428_01370 PF00551 Formyl transferase V428_01370 PF02911 Formyl transferase, C-terminal domain V428_01375 PF01327 Polypeptide deformylase V428_01380 PF01476 LysM domain V428_01385 PF02481 DNA recombination-mediator protein A V428_01390 PF04361 V428_01390 V428_01395 PF01396 V428_01395 V428_01400 PF00731 AIR carboxylase V428_01405 PF01300 Telomere recombination V428_01410 PF01218 Coproporphyrinogen III oxidase V428_01415 PF01488 Shikimate / quinate 5-dehydrogenase V428_01415 PF08501 Shikimate dehydrogenase substrate binding domain V428_01420 PF07369 Protein of unknown function (DUF1488) V428_01425 PF01926 50S ribosome-binding GTPase V428_01430 PF00034 Cytochrome c V428_01440 PF04220 V428_01440 V428_01445 PF10675 V428_01445 V428_01450 PF04055 Radical SAM superfamily V428_01450 PF06969 HemN C-terminal domain V428_01455 PF00962 Adenosine/AMP deaminase V428_01460 PF00072 Response regulator receiver domain V428_01460 PF00158 Sigma-54 interaction domain V428_01460 PF02954 Bacterial regulatory protein, Fis family V428_01465 PF00512 His Kinase A (phospho-acceptor) domain V428_01465 PF00989 PAS fold V428_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_01470 PF13511 V428_01470 V428_01475 PF00120 Glutamine synthetase, catalytic domain V428_01475 PF03951 Glutamine synthetase, beta-Grasp domain V428_01480 PF00009 Elongation factor Tu GTP binding domain V428_01480 PF00679 Elongation factor G C-terminus V428_01480 PF03144 Elongation factor Tu domain 2 V428_01485 PF03631 V428_01485 V428_01490 PF02580 D-Tyr-tRNA(Tyr) deacylase V428_01495 PF01564 Spermine/spermidine synthase V428_01500 PF00583 Acetyltransferase (GNAT) family V428_01500 PF09500 Putative thioesterase (yiiD_Cterm) V428_01505 PF13502 V428_01505 V428_01510 PF00270 DEAD/DEAH box helicase V428_01510 PF00271 Helicase conserved C-terminal domain V428_01510 PF17191 V428_01510 V428_01515 PF13091 PLD-like domain V428_01520 PF02447 V428_01520 V428_01525 PF01202 Shikimate kinase V428_01530 PF00920 Dehydratase family V428_01535 PF01081 KDPG and KHG aldolase V428_01540 PF00356 Bacterial regulatory proteins, lacI family V428_01540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_01545 PF00805 Pentapeptide repeats (8 copies) V428_01545 PF13576 Pentapeptide repeats (9 copies) V428_01545 PF13599 Pentapeptide repeats (9 copies) V428_01550 PF01551 Peptidase family M23 V428_01555 PF01676 Metalloenzyme superfamily V428_01555 PF06415 BPG-independent PGAM N-terminus (iPGM_N) V428_01560 PF00581 Rhodanese-like domain V428_01565 PF02556 Preprotein translocase subunit SecB V428_01570 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus V428_01570 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus V428_01575 PF01106 NifU-like domain V428_01575 PF01521 Iron-sulphur cluster biosynthesis V428_01585 PF00561 alpha/beta hydrolase fold V428_01595 PF12118 V428_01595 V428_01605 PF00575 S1 RNA binding domain V428_01605 PF09371 Tex-like protein N-terminal domain V428_01605 PF12836 Helix-hairpin-helix motif V428_01605 PF16921 V428_01605 V428_01610 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_01610 PF03449 Transcription elongation factor, N-terminal V428_01615 PF00072 Response regulator receiver domain V428_01615 PF00486 Transcriptional regulatory protein, C terminal V428_01620 PF00512 His Kinase A (phospho-acceptor) domain V428_01620 PF00672 HAMP domain V428_01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_01625 PF00892 EamA-like transporter family V428_01630 PF00338 Ribosomal protein S10p/S20e V428_01635 PF00297 Ribosomal protein L3 V428_01640 PF00573 Ribosomal protein L4/L1 family V428_01645 PF00276 Ribosomal protein L23 V428_01650 PF00181 Ribosomal Proteins L2, RNA binding domain V428_01650 PF03947 Ribosomal Proteins L2, C-terminal domain V428_01655 PF00203 Ribosomal protein S19 V428_01660 PF00237 Ribosomal protein L22p/L17e V428_01665 PF00189 Ribosomal protein S3, C-terminal domain V428_01665 PF07650 KH domain V428_01670 PF00252 Ribosomal protein L16p/L10e V428_01675 PF00831 Ribosomal L29 protein V428_01680 PF00366 Ribosomal protein S17 V428_01685 PF00238 Ribosomal protein L14p/L23e V428_01690 PF17136 V428_01690 V428_01695 PF00281 Ribosomal protein L5 V428_01695 PF00673 ribosomal L5P family C-terminus V428_01700 PF00253 Ribosomal protein S14p/S29e V428_01705 PF00410 Ribosomal protein S8 V428_01710 PF00347 Ribosomal protein L6 V428_01715 PF00861 Ribosomal L18p/L5e family V428_01720 PF00333 Ribosomal protein S5, N-terminal domain V428_01720 PF03719 Ribosomal protein S5, C-terminal domain V428_01725 PF00327 Ribosomal protein L30p/L7e V428_01730 PF00828 Ribosomal protein L18e/L15 V428_01735 PF00344 SecY translocase V428_01740 PF00416 Ribosomal protein S13/S18 V428_01745 PF00411 Ribosomal protein S11 V428_01750 PF00163 Ribosomal protein S4/S9 N-terminal domain V428_01750 PF01479 S4 domain V428_01755 PF01000 RNA polymerase Rpb3/RpoA insert domain V428_01755 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain V428_01755 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain V428_01760 PF01196 Ribosomal protein L17 V428_01795 PF13280 V428_01795 V428_01805 PF04247 V428_01805 V428_01810 PF00999 Sodium/hydrogen exchanger family V428_01810 PF02254 TrkA-N domain V428_01815 PF02525 Flavodoxin-like fold V428_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01820 PF03466 LysR substrate binding domain V428_01825 PF00106 short chain dehydrogenase V428_01835 PF04214 V428_01835 V428_01840 PF00326 Prolyl oligopeptidase family V428_01840 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_01845 PF16868 V428_01845 V428_01850 PF06808 V428_01850 V428_01850 PF11874 V428_01850 V428_01865 PF07947 V428_01865 V428_01870 PF07690 Major Facilitator Superfamily V428_01875 PF00529 HlyD family secretion protein V428_01875 PF16576 V428_01875 V428_01880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01880 PF03466 LysR substrate binding domain V428_01885 PF09413 Domain of unknown function (DUF2007) V428_01890 PF00375 Sodium:dicarboxylate symporter family V428_01895 PF10678 V428_01895 V428_01900 PF01914 V428_01900 V428_01905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_01905 PF03466 LysR substrate binding domain V428_01910 PF02416 mttA/Hcf106 family V428_01915 PF04175 Protein of unknown function (DUF406) V428_01925 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_01925 PF01464 Transglycosylase SLT domain V428_01935 PF13091 PLD-like domain V428_01940 PF00487 V428_01940 V428_01945 PF00440 Bacterial regulatory proteins, tetR family V428_01950 PF07226 V428_01950 V428_01955 PF06611 V428_01955 V428_01960 PF03602 Conserved hypothetical protein 95 V428_01965 PF00448 SRP54-type protein, GTPase domain V428_01965 PF02881 SRP54-type protein, helical bundle domain V428_01970 PF00005 ABC transporter V428_01980 PF00140 Sigma-70 factor, region 1 V428_01980 PF04542 Sigma-70 region 2 V428_01980 PF04545 Sigma-70, region 4 V428_01985 PF00484 Carbonic anhydrase V428_01990 PF00392 Bacterial regulatory proteins, gntR family V428_01990 PF07702 UTRA domain V428_01995 PF01979 Amidohydrolase family V428_02000 PF00491 Arginase family V428_02005 PF01175 Urocanase V428_02005 PF17391 V428_02005 V428_02005 PF17392 V428_02005 V428_02010 PF00221 Aromatic amino acid lyase V428_02015 PF01699 Sodium/calcium exchanger protein V428_02020 PF00563 EAL domain V428_02025 PF00563 EAL domain V428_02025 PF00990 GGDEF domain V428_02025 PF17157 V428_02025 V428_02030 PF00291 Pyridoxal-phosphate dependent enzyme V428_02055 PF00263 V428_02055 V428_02055 PF07655 V428_02055 V428_02060 PF13401 AAA domain V428_02065 PF14559 Tetratricopeptide repeat V428_02070 PF00437 Type II/IV secretion system protein V428_02070 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V428_02075 PF00482 Type II secretion system (T2SS), protein F V428_02085 PF07963 Prokaryotic N-terminal methylation motif V428_02090 PF07963 Prokaryotic N-terminal methylation motif V428_02095 PF07963 Prokaryotic N-terminal methylation motif V428_02100 PF07963 Prokaryotic N-terminal methylation motif V428_02105 PF07963 Prokaryotic N-terminal methylation motif V428_02120 PF06723 MreB/Mbl protein V428_02125 PF04085 rod shape-determining protein MreC V428_02130 PF04093 V428_02130 V428_02135 PF02545 Maf-like protein V428_02140 PF00575 S1 RNA binding domain V428_02140 PF10150 Ribonuclease E/G family V428_02145 PF13116 V428_02145 V428_02145 PF13502 V428_02145 V428_02150 PF07876 Stress responsive A/B Barrel Domain V428_02155 PF00795 Carbon-nitrogen hydrolase V428_02160 PF01523 Putative modulator of DNA gyrase V428_02165 PF01380 SIS domain V428_02165 PF01418 Helix-turn-helix domain, rpiR family V428_02170 PF09829 V428_02170 V428_02175 PF13609 Gram-negative porin V428_02180 PF00367 phosphotransferase system, EIIB V428_02180 PF02378 Phosphotransferase system, EIIC V428_02185 PF13580 SIS domain V428_02195 PF01914 V428_02195 V428_02200 PF07690 Major Facilitator Superfamily V428_02205 PF01902 ATP-binding region V428_02210 PF00072 Response regulator receiver domain V428_02210 PF01966 HD domain V428_02215 PF00072 Response regulator receiver domain V428_02215 PF00512 His Kinase A (phospho-acceptor) domain V428_02215 PF01627 Hpt domain V428_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_02220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_02220 PF07228 Stage II sporulation protein E (SpoIIE) V428_02230 PF01740 STAS domain V428_02230 PF08447 PAS fold V428_02230 PF13426 PAS domain V428_02235 PF02311 AraC-like ligand binding domain V428_02235 PF12833 Helix-turn-helix domain V428_02245 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) V428_02250 PF04228 V428_02250 V428_02260 PF08668 HDOD domain V428_02265 PF13302 Acetyltransferase (GNAT) domain V428_02270 PF12799 Leucine Rich repeats (2 copies) V428_02270 PF13516 Leucine Rich repeat V428_02280 PF00486 Transcriptional regulatory protein, C terminal V428_02290 PF00419 Fimbrial protein V428_02305 PF00419 Fimbrial protein V428_02310 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V428_02310 PF02753 Pili assembly chaperone PapD, C-terminal domain V428_02315 PF00577 Outer membrane usher protein V428_02315 PF13953 PapC C-terminal domain V428_02315 PF13954 PapC N-terminal domain V428_02320 PF00691 OmpA family V428_02320 PF01389 OmpA-like transmembrane domain V428_02325 PF00419 Fimbrial protein V428_02330 PF04320 V428_02330 V428_02335 PF11726 V428_02335 V428_02340 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_02345 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_02355 PF00589 Phage integrase family V428_02355 PF13356 Domain of unknown function (DUF4102) V428_02365 PF00999 Sodium/hydrogen exchanger family V428_02370 PF00809 Pterin binding enzyme V428_02370 PF02310 B12 binding domain V428_02370 PF02574 Homocysteine S-methyltransferase V428_02370 PF02607 B12 binding domain V428_02370 PF02965 Vitamin B12 dependent methionine synthase, activation domain V428_02375 PF08443 RimK-like ATP-grasp domain V428_02380 PF05525 V428_02380 V428_02390 PF00072 Response regulator receiver domain V428_02390 PF00486 Transcriptional regulatory protein, C terminal V428_02405 PF01117 Aerolysin toxin V428_02405 PF03440 Aerolysin/Pertussis toxin (APT) domain V428_02410 PF01964 ThiC family V428_02410 PF13667 ThiC-associated domain V428_02415 PF02581 Thiamine monophosphate synthase/TENI V428_02415 PF08543 Phosphomethylpyrimidine kinase V428_02420 PF00899 ThiF family V428_02425 PF02597 ThiS family V428_02430 PF05690 Thiazole biosynthesis protein ThiG V428_02435 PF04055 Radical SAM superfamily V428_02435 PF06968 Biotin and Thiamin Synthesis associated domain V428_02440 PF13166 V428_02440 V428_02450 PF13036 Protein of unknown function (DUF3897) V428_02455 PF13673 Acetyltransferase (GNAT) domain V428_02465 PF00990 GGDEF domain V428_02465 PF08448 PAS fold V428_02475 PF06055 V428_02475 V428_02480 PF13505 Outer membrane protein beta-barrel domain V428_02485 PF13302 Acetyltransferase (GNAT) domain V428_02490 PF08803 Putative mono-oxygenase ydhR V428_02495 PF01638 HxlR-like helix-turn-helix V428_02500 PF13673 Acetyltransferase (GNAT) domain V428_02510 PF01757 V428_02510 V428_02515 PF03929 V428_02515 V428_02520 PF00593 TonB dependent receptor V428_02520 PF07715 TonB-dependent Receptor Plug Domain V428_02525 PF04392 ABC transporter substrate binding protein V428_02530 PF13609 Gram-negative porin V428_02535 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded V428_02540 PF03692 V428_02540 V428_02545 PF07219 V428_02545 V428_02550 PF04375 V428_02550 V428_02555 PF02602 Uroporphyrinogen-III synthase HemD V428_02560 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain V428_02560 PF03900 Porphobilinogen deaminase, C-terminal domain V428_02565 PF01295 V428_02565 V428_02565 PF12633 V428_02565 V428_02570 PF02230 Phospholipase/Carboxylesterase V428_02575 PF01491 Frataxin-like domain V428_02580 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V428_02580 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_02585 PF01678 Diaminopimelate epimerase V428_02590 PF04340 Protein of unknown function, DUF484 V428_02595 PF00589 Phage integrase family V428_02595 PF02899 Phage integrase, N-terminal SAM-like domain V428_02600 PF13419 Haloacid dehalogenase-like hydrolase V428_02610 PF00027 Cyclic nucleotide-binding domain V428_02610 PF00924 Mechanosensitive ion channel V428_02620 PF07722 Peptidase C26 V428_02625 PF08282 haloacid dehalogenase-like hydrolase V428_02630 PF03961 V428_02630 V428_02635 PF13437 HlyD family secretion protein V428_02635 PF13533 Biotin-lipoyl like V428_02640 PF00005 ABC transporter V428_02650 PF12698 ABC-2 family transporter protein V428_02655 PF00994 Probable molybdopterin binding domain V428_02660 PF01966 HD domain V428_02660 PF11871 V428_02660 V428_02665 PF04204 Homoserine O-succinyltransferase V428_02675 PF01037 AsnC family V428_02675 PF13412 Winged helix-turn-helix DNA-binding V428_02680 PF00884 Sulfatase V428_02685 PF10387 Protein of unknown function (DUF2442) V428_02690 PF00593 TonB dependent receptor V428_02690 PF07715 TonB-dependent Receptor Plug Domain V428_02695 PF00128 Alpha amylase, catalytic domain V428_02700 PF02308 V428_02700 V428_02705 PF14401 V428_02705 V428_02710 PF00583 Acetyltransferase (GNAT) family V428_02715 PF12292 V428_02715 V428_02720 PF00106 short chain dehydrogenase V428_02725 PF03577 V428_02725 V428_02740 PF00465 Iron-containing alcohol dehydrogenase V428_02745 PF00043 Glutathione S-transferase, C-terminal domain V428_02745 PF02798 Glutathione S-transferase, N-terminal domain V428_02750 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_02760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_02760 PF12793 V428_02760 V428_02765 PF13279 Thioesterase-like superfamily V428_02775 PF03280 Proteobacterial lipase chaperone protein V428_02780 PF00561 alpha/beta hydrolase fold V428_02790 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V428_02790 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V428_02795 PF02698 DUF218 domain V428_02800 PF01752 Collagenase V428_02810 PF00419 Fimbrial protein V428_02820 PF00577 Outer membrane usher protein V428_02820 PF13953 PapC C-terminal domain V428_02820 PF13954 PapC N-terminal domain V428_02825 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V428_02825 PF02753 Pili assembly chaperone PapD, C-terminal domain V428_02830 PF00419 Fimbrial protein V428_02835 PF00419 Fimbrial protein V428_02840 PF00486 Transcriptional regulatory protein, C terminal V428_02845 PF00501 AMP-binding enzyme V428_02845 PF13193 AMP-binding enzyme C-terminal domain V428_02850 PF13378 Enolase C-terminal domain-like V428_02855 PF00378 Enoyl-CoA hydratase/isomerase family V428_02860 PF12697 Alpha/beta hydrolase family V428_02865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_02865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_02865 PF16582 V428_02865 V428_02870 PF00425 chorismate binding enzyme V428_02875 PF01040 UbiA prenyltransferase family V428_02885 PF03413 Peptidase propeptide and YPEB domain V428_02885 PF03929 V428_02885 V428_02895 PF03692 V428_02895 V428_02900 PF00270 DEAD/DEAH box helicase V428_02900 PF00271 Helicase conserved C-terminal domain V428_02900 PF03880 DbpA RNA binding domain V428_02905 PF01773 Na+ dependent nucleoside transporter N-terminus V428_02905 PF07662 Na+ dependent nucleoside transporter C-terminus V428_02910 PF04307 V428_02910 V428_02915 PF01292 Prokaryotic cytochrome b561 V428_02920 PF13670 V428_02920 V428_02925 PF02639 V428_02925 V428_02930 PF01544 CorA-like Mg2+ transporter protein V428_02935 PF00924 Mechanosensitive ion channel V428_02945 PF12339 V428_02945 V428_02950 PF00999 Sodium/hydrogen exchanger family V428_02950 PF02254 TrkA-N domain V428_02955 PF05068 Mannitol repressor V428_02960 PF01232 Mannitol dehydrogenase Rossmann domain V428_02960 PF08125 Mannitol dehydrogenase C-terminal domain V428_02965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_02965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_02965 PF02378 Phosphotransferase system, EIIC V428_02975 PF04235 V428_02975 V428_02975 PF07786 V428_02975 V428_02980 PF00440 Bacterial regulatory proteins, tetR family V428_02985 PF00773 RNB domain V428_02985 PF08206 Ribonuclease B OB domain V428_02990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_02990 PF03466 LysR substrate binding domain V428_02995 PF00765 Autoinducer synthetase V428_03000 PF00196 Bacterial regulatory proteins, luxR family V428_03000 PF03472 Autoinducer binding domain V428_03005 PF01810 V428_03005 V428_03010 PF00149 Calcineurin-like phosphoesterase V428_03010 PF02872 5'-nucleotidase, C-terminal domain V428_03015 PF05433 V428_03015 V428_03020 PF00583 Acetyltransferase (GNAT) family V428_03025 PF11756 V428_03025 V428_03030 PF00557 Metallopeptidase family M24 V428_03030 PF01321 Creatinase/Prolidase N-terminal domain V428_03030 PF16188 V428_03030 V428_03030 PF16189 V428_03030 V428_03035 PF00392 Bacterial regulatory proteins, gntR family V428_03035 PF07729 FCD domain V428_03040 PF01293 Phosphoenolpyruvate carboxykinase V428_03045 PF01430 Hsp33 protein V428_03050 PF01479 S4 domain V428_03055 PF11356 Type IV pilus biogenesis V428_03060 PF00263 V428_03060 V428_03060 PF03958 Bacterial type II/III secretion system short domain V428_03065 PF00437 Type II/IV secretion system protein V428_03070 PF00482 Type II secretion system (T2SS), protein F V428_03075 PF07963 Prokaryotic N-terminal methylation motif V428_03075 PF08334 Type II secretion system (T2SS), protein G V428_03085 PF07963 Prokaryotic N-terminal methylation motif V428_03085 PF12019 Type II transport protein GspH V428_03090 PF02501 Type II secretion system (T2SS), protein I V428_03090 PF07963 Prokaryotic N-terminal methylation motif V428_03095 PF07963 Prokaryotic N-terminal methylation motif V428_03095 PF11612 Type II secretion system (T2SS), protein J V428_03100 PF03934 Type II secretion system (T2SS), protein K V428_03105 PF05134 Type II secretion system (T2SS), protein L V428_03105 PF12693 GspL periplasmic domain V428_03110 PF04612 Type II secretion system (T2SS), protein M V428_03115 PF01203 V428_03115 V428_03120 PF00196 Bacterial regulatory proteins, luxR family V428_03125 PF00579 tRNA synthetases class I (W and Y) V428_03125 PF01479 S4 domain V428_03130 PF00702 haloacid dehalogenase-like hydrolase V428_03135 PF00293 NUDIX domain V428_03140 PF00459 Inositol monophosphatase family V428_03145 PF03222 Tryptophan/tyrosine permease family V428_03150 PF01588 Putative tRNA binding domain V428_03155 PF02311 AraC-like ligand binding domain V428_03155 PF12833 Helix-turn-helix domain V428_03160 PF01340 Met Apo-repressor, MetJ V428_03165 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_03170 PF00696 Amino acid kinase family V428_03170 PF00742 Homoserine dehydrogenase V428_03170 PF03447 Homoserine dehydrogenase, NAD binding domain V428_03180 PF00311 Phosphoenolpyruvate carboxylase V428_03185 PF01546 Peptidase family M20/M25/M40 V428_03185 PF07687 Peptidase dimerisation domain V428_03190 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_03190 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_03195 PF00696 Amino acid kinase family V428_03200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_03200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_03205 PF00764 Arginosuccinate synthase V428_03210 PF00206 Lyase V428_03210 PF14698 Argininosuccinate lyase C-terminal V428_03215 PF04299 Putative FMN-binding domain V428_03230 PF06961 V428_03230 V428_03235 PF00132 Bacterial transferase hexapeptide (six repeats) V428_03235 PF12464 Maltose acetyltransferase V428_03240 PF02308 V428_03240 V428_03240 PF13194 V428_03240 V428_03245 PF13531 Bacterial extracellular solute-binding protein V428_03250 PF06821 Serine hydrolase V428_03255 PF00528 Binding-protein-dependent transport system inner membrane component V428_03260 PF00528 Binding-protein-dependent transport system inner membrane component V428_03265 PF00005 ABC transporter V428_03265 PF12857 V428_03265 V428_03275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03275 PF03466 LysR substrate binding domain V428_03280 PF03067 Chitin binding domain V428_03285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_03285 PF00672 HAMP domain V428_03285 PF17200 V428_03285 V428_03290 PF01432 Peptidase family M3 V428_03295 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_03300 PF11308 V428_03300 V428_03310 PF13583 Metallo-peptidase family M12B Reprolysin-like V428_03315 PF03572 Peptidase family S41 V428_03315 PF07676 WD40-like Beta Propeller Repeat V428_03315 PF14684 Tricorn protease C1 domain V428_03320 PF03734 L,D-transpeptidase catalytic domain V428_03325 PF03591 V428_03325 V428_03330 PF05437 V428_03330 V428_03335 PF11230 V428_03335 V428_03340 PF04055 Radical SAM superfamily V428_03340 PF13353 4Fe-4S single cluster domain V428_03345 PF08850 V428_03345 V428_03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03350 PF03466 LysR substrate binding domain V428_03355 PF00155 Aminotransferase class I and II V428_03360 PF02583 Metal-sensitive transcriptional repressor V428_03365 PF01545 Cation efflux family V428_03375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_03375 PF03714 Bacterial pullanase-associated domain V428_03375 PF11852 Domain of unknown function (DUF3372) V428_03380 PF00122 E1-E2 ATPase V428_03380 PF00403 Heavy-metal-associated domain V428_03380 PF00702 haloacid dehalogenase-like hydrolase V428_03385 PF08534 Redoxin V428_03390 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_03395 PF00270 DEAD/DEAH box helicase V428_03395 PF00271 Helicase conserved C-terminal domain V428_03410 PF03372 Endonuclease/Exonuclease/phosphatase family V428_03415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_03415 PF08447 PAS fold V428_03420 PF02517 CAAX protease self-immunity V428_03430 PF06062 V428_03430 V428_03440 PF05651 V428_03440 V428_03440 PF13556 PucR C-terminal helix-turn-helix domain V428_03445 PF02447 V428_03445 V428_03450 PF02595 Glycerate kinase family V428_03455 PF07298 V428_03455 V428_03460 PF00255 Glutathione peroxidase V428_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03465 PF03466 LysR substrate binding domain V428_03470 PF01773 Na+ dependent nucleoside transporter N-terminus V428_03470 PF07662 Na+ dependent nucleoside transporter C-terminus V428_03470 PF07670 Nucleoside recognition V428_03475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_03475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V428_03480 PF00472 RF-1 domain V428_03485 PF00543 Nitrogen regulatory protein P-II V428_03490 PF13343 Bacterial extracellular solute-binding protein V428_03495 PF00528 Binding-protein-dependent transport system inner membrane component V428_03500 PF00005 ABC transporter V428_03505 PF04261 Dyp-type peroxidase family V428_03510 PF01316 Arginine repressor, DNA binding domain V428_03510 PF02863 Arginine repressor, C-terminal domain V428_03515 PF00005 ABC transporter V428_03520 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_03525 PF00528 Binding-protein-dependent transport system inner membrane component V428_03530 PF00528 Binding-protein-dependent transport system inner membrane component V428_03535 PF00056 lactate/malate dehydrogenase, NAD binding domain V428_03535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain V428_03540 PF08238 Sel1 repeat V428_03545 PF00042 Globin V428_03545 PF00175 Oxidoreductase NAD-binding domain V428_03545 PF00970 Oxidoreductase FAD-binding domain V428_03550 PF02082 Transcriptional regulator V428_03555 PF00571 CBS domain V428_03555 PF01595 V428_03555 V428_03555 PF03471 Transporter associated domain V428_03560 PF01578 V428_03560 V428_03565 PF00448 SRP54-type protein, GTPase domain V428_03565 PF02881 SRP54-type protein, helical bundle domain V428_03565 PF02978 Signal peptide binding domain V428_03570 PF00886 Ribosomal protein S16 V428_03575 PF01782 RimM N-terminal domain V428_03575 PF05239 PRC-barrel domain V428_03580 PF01746 tRNA (Guanine-1)-methyltransferase V428_03585 PF01245 Ribosomal protein L19 V428_03595 PF02976 DNA mismatch repair enzyme MutH V428_03600 PF00293 NUDIX domain V428_03605 PF00391 PEP-utilising enzyme, mobile domain V428_03605 PF01590 GAF domain V428_03605 PF02896 PEP-utilising enzyme, TIM barrel domain V428_03605 PF05524 PEP-utilising enzyme, N-terminal V428_03610 PF01790 V428_03610 V428_03615 PF00303 Thymidylate synthase V428_03620 PF06965 Na+/H+ antiporter 1 V428_03630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03630 PF03466 LysR substrate binding domain V428_03635 PF01022 Bacterial regulatory protein, arsR family V428_03640 PF01649 Ribosomal protein S20 V428_03645 PF03023 V428_03645 V428_03650 PF01687 Riboflavin kinase V428_03650 PF06574 FAD synthetase V428_03655 PF00133 tRNA synthetases class I (I, L, M and V) V428_03655 PF06827 Zinc finger found in FPG and IleRS V428_03655 PF08264 Anticodon-binding domain of tRNA V428_03660 PF01252 V428_03660 V428_03665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_03670 PF02401 LytB protein V428_03675 PF07963 Prokaryotic N-terminal methylation motif V428_03675 PF12019 Type II transport protein GspH V428_03680 PF07963 Prokaryotic N-terminal methylation motif V428_03685 PF16074 V428_03685 V428_03690 PF13681 V428_03690 V428_03690 PF14341 V428_03690 V428_03695 PF05567 Neisseria PilC beta-propeller domain V428_03700 PF07963 Prokaryotic N-terminal methylation motif V428_03700 PF16732 V428_03700 V428_03705 PF07963 Prokaryotic N-terminal methylation motif V428_03705 PF16732 V428_03705 V428_03710 PF07963 Prokaryotic N-terminal methylation motif V428_03710 PF12019 Type II transport protein GspH V428_03725 PF07963 Prokaryotic N-terminal methylation motif V428_03730 PF00795 Carbon-nitrogen hydrolase V428_03730 PF02540 NAD synthase V428_03735 PF00543 Nitrogen regulatory protein P-II V428_03745 PF02664 S-Ribosylhomocysteinase (LuxS) V428_03750 PF00990 GGDEF domain V428_03755 PF00575 S1 RNA binding domain V428_03755 PF00773 RNB domain V428_03755 PF08206 Ribonuclease B OB domain V428_03755 PF08461 Ribonuclease R winged-helix domain V428_03760 PF00588 SpoU rRNA Methylase family V428_03760 PF08032 RNA 2'-O ribose methyltransferase substrate binding V428_03765 PF00027 Cyclic nucleotide-binding domain V428_03770 PF13673 Acetyltransferase (GNAT) domain V428_03775 PF00892 EamA-like transporter family V428_03780 PF00892 EamA-like transporter family V428_03790 PF01566 V428_03790 V428_03795 PF01250 Ribosomal protein S6 V428_03800 PF01084 Ribosomal protein S18 V428_03805 PF01281 Ribosomal protein L9, N-terminal domain V428_03805 PF03948 Ribosomal protein L9, C-terminal domain V428_03810 PF00175 Oxidoreductase NAD-binding domain V428_03830 PF08240 Alcohol dehydrogenase GroES-like domain V428_03830 PF13602 Zinc-binding dehydrogenase V428_03835 PF09335 V428_03835 V428_03840 PF00675 Insulinase (Peptidase family M16) V428_03840 PF05193 Peptidase M16 inactive domain V428_03845 PF04262 Glutamate-cysteine ligase V428_03850 PF14486 Domain of unknown function (DUF4432) V428_03855 PF00501 AMP-binding enzyme V428_03865 PF00583 Acetyltransferase (GNAT) family V428_03870 PF03603 DNA polymerase III psi subunit V428_03875 PF07728 AAA domain (dynein-related subfamily) V428_03875 PF12592 Protein of unknown function (DUF3763) V428_03880 PF05762 VWA domain containing CoxE-like protein V428_03885 PF00990 GGDEF domain V428_03885 PF08447 PAS fold V428_03890 PF00990 GGDEF domain V428_03890 PF13176 Tetratricopeptide repeat V428_03895 PF00009 Elongation factor Tu GTP binding domain V428_03895 PF03144 Elongation factor Tu domain 2 V428_03895 PF16658 V428_03895 V428_03900 PF12680 SnoaL-like domain V428_03905 PF01047 MarR family V428_03910 PF02627 Carboxymuconolactone decarboxylase family V428_03915 PF00583 Acetyltransferase (GNAT) family V428_03915 PF12802 MarR family V428_03920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_03925 PF00440 Bacterial regulatory proteins, tetR family V428_03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03930 PF03466 LysR substrate binding domain V428_03935 PF04371 Porphyromonas-type peptidyl-arginine deiminase V428_03940 PF01425 Amidase V428_03960 PF00753 Metallo-beta-lactamase superfamily V428_03970 PF00270 DEAD/DEAH box helicase V428_03970 PF00271 Helicase conserved C-terminal domain V428_03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_03975 PF03466 LysR substrate binding domain V428_03980 PF07690 Major Facilitator Superfamily V428_03990 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase V428_03995 PF03150 Di-haem cytochrome c peroxidase V428_04005 PF00132 Bacterial transferase hexapeptide (six repeats) V428_04010 PF00445 Ribonuclease T2 family V428_04020 PF03060 Nitronate monooxygenase V428_04050 PF00293 NUDIX domain V428_04055 PF00512 His Kinase A (phospho-acceptor) domain V428_04055 PF00672 HAMP domain V428_04055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04060 PF00072 Response regulator receiver domain V428_04060 PF00486 Transcriptional regulatory protein, C terminal V428_04065 PF16576 V428_04065 V428_04070 PF00005 ABC transporter V428_04070 PF02687 V428_04070 V428_04070 PF12704 MacB-like periplasmic core domain V428_04075 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_04080 PF00005 ABC transporter V428_04085 PF00528 Binding-protein-dependent transport system inner membrane component V428_04090 PF00528 Binding-protein-dependent transport system inner membrane component V428_04095 PF00291 Pyridoxal-phosphate dependent enzyme V428_04100 PF00326 Prolyl oligopeptidase family V428_04100 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_04105 PF05170 V428_04105 V428_04110 PF00583 Acetyltransferase (GNAT) family V428_04115 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) V428_04120 PF03710 Glutamate-ammonia ligase adenylyltransferase V428_04120 PF08335 GlnD PII-uridylyltransferase V428_04125 PF00583 Acetyltransferase (GNAT) family V428_04130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_04135 PF07885 Ion channel V428_04140 PF08239 Bacterial SH3 domain V428_04145 PF00171 Aldehyde dehydrogenase family V428_04145 PF01619 Proline dehydrogenase V428_04145 PF14850 DNA-binding domain of Proline dehydrogenase V428_04150 PF00293 NUDIX domain V428_04150 PF09297 NADH pyrophosphatase zinc ribbon domain V428_04155 PF01208 Uroporphyrinogen decarboxylase (URO-D) V428_04160 PF00480 ROK family V428_04165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_04165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_04170 PF00162 Phosphoglycerate kinase V428_04175 PF01116 Fructose-bisphosphate aldolase class-II V428_04180 PF01266 FAD dependent oxidoreductase V428_04190 PF02683 V428_04190 V428_04190 PF11412 Disulphide bond corrector protein DsbC V428_04190 PF13899 Thioredoxin-like V428_04195 PF03091 CutA1 divalent ion tolerance protein V428_04205 PF05232 V428_04205 V428_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_04210 PF03466 LysR substrate binding domain V428_04215 PF01571 Aminomethyltransferase folate-binding domain V428_04220 PF03937 Flavinator of succinate dehydrogenase V428_04230 PF00890 FAD binding domain V428_04230 PF02910 Fumarate reductase flavoprotein C-term V428_04235 PF04542 Sigma-70 region 2 V428_04235 PF08281 Sigma-70, region 4 V428_04240 PF03872 Anti sigma-E protein RseA, N-terminal domain V428_04240 PF03873 Anti sigma-E protein RseA, C-terminal domain V428_04245 PF03888 MucB/RseB family V428_04245 PF17188 V428_04245 V428_04250 PF04246 V428_04250 V428_04255 PF00009 Elongation factor Tu GTP binding domain V428_04255 PF00679 Elongation factor G C-terminus V428_04255 PF03144 Elongation factor Tu domain 2 V428_04255 PF06421 GTP-binding protein LepA C-terminus V428_04260 PF00717 Peptidase S24-like V428_04260 PF10502 Signal peptidase, peptidase S26 V428_04265 PF00035 Double-stranded RNA binding motif V428_04265 PF14622 Ribonuclease-III-like V428_04270 PF01926 50S ribosome-binding GTPase V428_04270 PF07650 KH domain V428_04275 PF02565 Recombination protein O C terminal V428_04275 PF11967 Recombination protein O N terminal V428_04280 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ V428_04290 PF01116 Fructose-bisphosphate aldolase class-II V428_04295 PF01979 Amidohydrolase family V428_04300 PF03610 PTS system fructose IIA component V428_04305 PF03613 V428_04305 V428_04310 PF03609 V428_04310 V428_04315 PF03830 PTS system sorbose subfamily IIB component V428_04320 PF01380 SIS domain V428_04325 PF08013 Tagatose 6 phosphate kinase V428_04330 PF00455 V428_04330 V428_04330 PF08220 DeoR-like helix-turn-helix domain V428_04335 PF01471 Putative peptidoglycan binding domain V428_04335 PF01510 N-acetylmuramoyl-L-alanine amidase V428_04340 PF07308 V428_04340 V428_04345 PF00072 Response regulator receiver domain V428_04345 PF00512 His Kinase A (phospho-acceptor) domain V428_04345 PF01627 Hpt domain V428_04345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04345 PF09984 V428_04345 V428_04350 PF01938 TRAM domain V428_04350 PF05958 tRNA (Uracil-5-)-methyltransferase V428_04355 PF02824 TGS domain V428_04355 PF04607 Region found in RelA / SpoT proteins V428_04355 PF13291 ACT domain V428_04355 PF13328 HD domain V428_04360 PF03819 MazG nucleotide pyrophosphohydrolase domain V428_04365 PF00117 Glutamine amidotransferase class-I V428_04365 PF06418 CTP synthase N-terminus V428_04370 PF00113 Enolase, C-terminal TIM barrel domain V428_04370 PF03952 Enolase, N-terminal domain V428_04375 PF04977 Septum formation initiator V428_04380 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase V428_04385 PF02542 YgbB family V428_04390 PF01142 tRNA pseudouridine synthase D (TruD) V428_04395 PF01975 Survival protein SurE V428_04400 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) V428_04405 PF09335 V428_04405 V428_04410 PF01476 LysM domain V428_04410 PF01551 Peptidase family M23 V428_04415 PF00140 Sigma-70 factor, region 1 V428_04415 PF04539 Sigma-70 region 3 V428_04415 PF04542 Sigma-70 region 2 V428_04415 PF04545 Sigma-70, region 4 V428_04420 PF00814 Glycoprotease family V428_04425 PF01165 Ribosomal protein S21 V428_04430 PF09424 Yqey-like protein V428_04435 PF01807 CHC2 zinc finger V428_04435 PF08275 DNA primase catalytic core, N-terminal domain V428_04435 PF08278 DNA primase DnaG DnaB-binding V428_04435 PF10410 DnaB-helicase binding domain of primase V428_04435 PF13662 Toprim domain V428_04440 PF00140 Sigma-70 factor, region 1 V428_04440 PF03979 Sigma-70 factor, region 1 V428_04440 PF04539 Sigma-70 region 3 V428_04440 PF04542 Sigma-70 region 2 V428_04440 PF04545 Sigma-70, region 4 V428_04440 PF04546 Sigma-70, non-essential region V428_04455 PF00128 Alpha amylase, catalytic domain V428_04455 PF00801 PKD domain V428_04455 PF02806 Alpha amylase, C-terminal all-beta domain V428_04460 PF01292 Prokaryotic cytochrome b561 V428_04465 PF07361 Cytochrome b562 V428_04470 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain V428_04470 PF02843 Phosphoribosylglycinamide synthetase, C domain V428_04470 PF02844 Phosphoribosylglycinamide synthetase, N domain V428_04475 PF01808 AICARFT/IMPCHase bienzyme V428_04475 PF02142 MGS-like domain V428_04480 PF00376 MerR family regulatory protein V428_04480 PF09278 MerR, DNA binding V428_04485 PF01872 RibD C-terminal domain V428_04490 PF03889 V428_04490 V428_04495 PF04055 Radical SAM superfamily V428_04495 PF06969 HemN C-terminal domain V428_04500 PF01725 Ham1 family V428_04505 PF07690 Major Facilitator Superfamily V428_04510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_04510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_04520 PF13302 Acetyltransferase (GNAT) domain V428_04525 PF13302 Acetyltransferase (GNAT) domain V428_04535 PF01447 Thermolysin metallopeptidase, catalytic domain V428_04535 PF02868 Thermolysin metallopeptidase, alpha-helical domain V428_04535 PF03413 Peptidase propeptide and YPEB domain V428_04535 PF04151 Bacterial pre-peptidase C-terminal domain V428_04535 PF07504 Fungalysin/Thermolysin Propeptide Motif V428_04540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_04540 PF03466 LysR substrate binding domain V428_04545 PF07690 Major Facilitator Superfamily V428_04550 PF00267 Gram-negative porin V428_04555 PF03605 V428_04555 V428_04560 PF00206 Lyase V428_04560 PF10415 Fumarase C C-terminus V428_04565 PF04186 V428_04565 V428_04570 PF01554 MatE V428_04575 PF00166 Chaperonin 10 Kd subunit V428_04580 PF00118 TCP-1/cpn60 chaperonin family V428_04590 PF00563 EAL domain V428_04590 PF00990 GGDEF domain V428_04600 PF00849 RNA pseudouridylate synthase V428_04605 PF00176 SNF2 family N-terminal domain V428_04605 PF00271 Helicase conserved C-terminal domain V428_04605 PF12137 RNA polymerase recycling family C-terminal V428_04635 PF02867 Ribonucleotide reductase, barrel domain V428_04645 PF02562 PhoH-like protein V428_04645 PF13638 PIN domain V428_04650 PF00005 ABC transporter V428_04655 PF00528 Binding-protein-dependent transport system inner membrane component V428_04660 PF13416 Bacterial extracellular solute-binding protein V428_04665 PF07238 PilZ domain V428_04675 PF00694 Aconitase C-terminal domain V428_04680 PF00330 Aconitase family (aconitate hydratase) V428_04685 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_04690 PF00682 HMGL-like V428_04690 PF08502 LeuA allosteric (dimerisation) domain V428_04695 PF00440 Bacterial regulatory proteins, tetR family V428_04700 PF01569 PAP2 superfamily V428_04705 PF13528 Glycosyl transferase family 1 V428_04715 PF00205 Thiamine pyrophosphate enzyme, central domain V428_04715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_04715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_04720 PF10369 Small subunit of acetolactate synthase V428_04720 PF13710 ACT domain V428_04725 PF01515 Phosphate acetyl/butaryl transferase V428_04725 PF07085 DRTGG domain V428_04725 PF13500 AAA domain V428_04730 PF00871 Acetokinase family V428_04735 PF04217 V428_04735 V428_04740 PF03887 YfbU domain V428_04745 PF00578 AhpC/TSA family V428_04750 PF13740 ACT domain V428_04755 PF00701 Dihydrodipicolinate synthetase family V428_04760 PF06804 NlpB/DapX lipoprotein V428_04765 PF01259 SAICAR synthetase V428_04770 PF13561 Enoyl-(Acyl carrier protein) reductase V428_04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_04775 PF03466 LysR substrate binding domain V428_04780 PF09829 V428_04780 V428_04785 PF01230 HIT domain V428_04790 PF11813 V428_04790 V428_04795 PF11059 V428_04795 V428_04800 PF00072 Response regulator receiver domain V428_04800 PF00512 His Kinase A (phospho-acceptor) domain V428_04800 PF01627 Hpt domain V428_04800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04800 PF08448 PAS fold V428_04805 PF01966 HD domain V428_04815 PF00072 Response regulator receiver domain V428_04815 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_04815 PF00512 His Kinase A (phospho-acceptor) domain V428_04815 PF01627 Hpt domain V428_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04815 PF08448 PAS fold V428_04820 PF00072 Response regulator receiver domain V428_04820 PF00563 EAL domain V428_04825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_04825 PF00672 HAMP domain V428_04830 PF02357 Transcription termination factor nusG V428_04835 PF03180 NLPA lipoprotein V428_04840 PF00528 Binding-protein-dependent transport system inner membrane component V428_04845 PF00005 ABC transporter V428_04845 PF09383 NIL domain V428_04855 PF00480 ROK family V428_04860 PF08331 V428_04860 V428_04860 PF13484 V428_04860 V428_04865 PF01256 Carbohydrate kinase V428_04865 PF03853 YjeF-related protein N-terminus V428_04870 PF02367 Uncharacterised P-loop hydrolase UPF0079 V428_04875 PF01476 LysM domain V428_04875 PF01520 N-acetylmuramoyl-L-alanine amidase V428_04875 PF11741 AMIN domain V428_04885 PF01119 DNA mismatch repair protein, C-terminal domain V428_04885 PF08676 MutL C terminal dimerisation domain V428_04885 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_04890 PF01715 IPP transferase V428_04895 PF17209 V428_04895 V428_04900 PF01926 50S ribosome-binding GTPase V428_04900 PF13167 V428_04900 V428_04900 PF16360 V428_04900 V428_04905 PF01145 SPFH domain / Band 7 family V428_04905 PF12221 V428_04905 V428_04910 PF01145 SPFH domain / Band 7 family V428_04915 PF09838 V428_04915 V428_04920 PF00348 Polyprenyl synthetase V428_04925 PF00829 Ribosomal prokaryotic L21 protein V428_04930 PF01016 Ribosomal L27 protein V428_04935 PF01018 GTP1/OBG V428_04935 PF01926 50S ribosome-binding GTPase V428_04940 PF07670 Nucleoside recognition V428_04945 PF00501 AMP-binding enzyme V428_04945 PF13193 AMP-binding enzyme C-terminal domain V428_04960 PF13487 HD domain V428_04965 PF00296 Luciferase-like monooxygenase V428_04970 PF01381 Helix-turn-helix V428_04970 PF13239 V428_04970 V428_04975 PF00149 Calcineurin-like phosphoesterase V428_04980 PF04379 Protein of unknown function (DUF525) V428_04985 PF00398 Ribosomal RNA adenine dimethylase V428_04990 PF04166 Pyridoxal phosphate biosynthetic protein PdxA V428_04995 PF00639 PPIC-type PPIASE domain V428_04995 PF09312 SurA N-terminal domain V428_05000 PF03968 OstA-like protein V428_05000 PF04453 Organic solvent tolerance protein V428_05005 PF01636 Phosphotransferase enzyme family V428_05010 PF00483 Nucleotidyl transferase V428_05015 PF00226 DnaJ domain V428_05015 PF05099 Tellurite resistance protein TerB V428_05020 PF00860 Permease family V428_05030 PF00005 ABC transporter V428_05030 PF12848 ABC transporter V428_05035 PF00589 Phage integrase family V428_05035 PF12167 V428_05035 V428_05040 PF06806 Putative excisionase (DUF1233) V428_05065 PF05869 V428_05065 V428_05080 PF00717 Peptidase S24-like V428_05085 PF06892 V428_05085 V428_05090 PF09669 V428_05090 V428_05090 PF10554 V428_05090 V428_05095 PF09524 V428_05095 V428_05110 PF03374 V428_05110 V428_05110 PF09669 V428_05110 V428_05125 PF14359 Domain of unknown function (DUF4406) V428_05135 PF06147 V428_05135 V428_05145 PF03589 Antitermination protein V428_05150 PF13333 V428_05150 V428_05155 PF00004 ATPase family associated with various cellular activities (AAA) V428_05160 PF01555 DNA methylase V428_05165 PF00004 ATPase family associated with various cellular activities (AAA) V428_05170 PF08843 Nucleotidyl transferase of unknown function (DUF1814) V428_05180 PF10746 V428_05180 V428_05185 PF00959 Phage lysozyme V428_05190 PF10721 V428_05190 V428_05195 PF01844 HNH endonuclease V428_05200 PF05119 V428_05200 V428_05205 PF03354 V428_05205 V428_05215 PF04860 Phage portal protein V428_05220 PF01343 Peptidase family S49 V428_05225 PF05065 Phage capsid family V428_05235 PF05135 Phage gp6-like head-tail connector protein V428_05320 PF10688 V428_05320 V428_05325 PF01048 Phosphorylase superfamily V428_05330 PF01464 Transglycosylase SLT domain V428_05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_05345 PF03466 LysR substrate binding domain V428_05350 PF01048 Phosphorylase superfamily V428_05355 PF01773 Na+ dependent nucleoside transporter N-terminus V428_05355 PF07662 Na+ dependent nucleoside transporter C-terminus V428_05355 PF07670 Nucleoside recognition V428_05360 PF01791 DeoC/LacD family aldolase V428_05365 PF00892 EamA-like transporter family V428_05370 PF01370 NAD dependent epimerase/dehydratase family V428_05375 PF02588 V428_05375 V428_05380 PF00005 ABC transporter V428_05385 PF01032 FecCD transport family V428_05390 PF01497 Periplasmic binding protein V428_05395 PF06228 Haem utilisation ChuX/HutX V428_05400 PF01243 Pyridoxamine 5'-phosphate oxidase V428_05410 PF00857 Isochorismatase family V428_05415 PF04187 Protein of unknown function, DUF399 V428_05420 PF00593 TonB dependent receptor V428_05420 PF07715 TonB-dependent Receptor Plug Domain V428_05425 PF12832 MFS_1 like family V428_05430 PF13443 Cro/C1-type HTH DNA-binding domain V428_05435 PF11188 V428_05435 V428_05440 PF00072 Response regulator receiver domain V428_05440 PF00512 His Kinase A (phospho-acceptor) domain V428_05440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_05440 PF12860 V428_05440 V428_05445 PF00704 Glycosyl hydrolases family 18 V428_05445 PF08329 Chitinase A, N-terminal domain V428_05450 PF10462 Peptidase M66 V428_05455 PF00182 Chitinase class I V428_05455 PF02839 Carbohydrate binding domain V428_05460 PF13489 Methyltransferase domain V428_05465 PF00027 Cyclic nucleotide-binding domain V428_05465 PF00325 Bacterial regulatory proteins, crp family V428_05470 PF02566 OsmC-like protein V428_05475 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme V428_05480 PF13590 Domain of unknown function (DUF4136) V428_05485 PF00485 Phosphoribulokinase / Uridine kinase family V428_05490 PF00893 Small Multidrug Resistance protein V428_05495 PF00892 EamA-like transporter family V428_05500 PF02366 V428_05500 V428_05505 PF01522 Polysaccharide deacetylase V428_05510 PF00551 Formyl transferase V428_05510 PF01370 NAD dependent epimerase/dehydratase family V428_05510 PF02911 Formyl transferase, C-terminal domain V428_05515 PF00535 Glycosyl transferase family 2 V428_05520 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_05525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V428_05525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V428_05525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V428_05530 PF06794 Uncharacterised protein family (UPF0270) V428_05535 PF00990 GGDEF domain V428_05535 PF17178 V428_05535 V428_05545 PF00072 Response regulator receiver domain V428_05545 PF01584 CheW-like domain V428_05555 PF09526 V428_05555 V428_05560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_05565 PF04102 SlyX V428_05570 PF00400 WD domain, G-beta repeat V428_05575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_05575 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_05580 PF00072 Response regulator receiver domain V428_05580 PF00158 Sigma-54 interaction domain V428_05580 PF02954 Bacterial regulatory protein, Fis family V428_05585 PF13374 Tetratricopeptide repeat V428_05595 PF11169 V428_05595 V428_05600 PF00149 Calcineurin-like phosphoesterase V428_05600 PF02872 5'-nucleotidase, C-terminal domain V428_05605 PF00563 EAL domain V428_05605 PF12792 V428_05605 V428_05610 PF04280 Tim44-like domain V428_05620 PF00772 DnaB-like helicase N terminal domain V428_05620 PF03796 DnaB-like helicase C terminal domain V428_05625 PF00842 Alanine racemase, C-terminal domain V428_05625 PF01168 Alanine racemase, N-terminal domain V428_05635 PF12838 4Fe-4S dicluster domain V428_05640 PF01136 V428_05640 V428_05640 PF16325 V428_05640 V428_05645 PF00563 EAL domain V428_05670 PF00266 Aminotransferase class-V V428_05675 PF00072 Response regulator receiver domain V428_05675 PF01339 CheB methylesterase V428_05680 PF03975 CheD chemotactic sensory transduction V428_05685 PF01739 CheR methyltransferase, SAM binding domain V428_05685 PF03705 CheR methyltransferase, all-alpha domain V428_05690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_05690 PF13426 PAS domain V428_05695 PF01584 CheW-like domain V428_05700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_05700 PF12729 V428_05700 V428_05705 PF01584 CheW-like domain V428_05705 PF01627 Hpt domain V428_05705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_05705 PF02895 Signal transducing histidine kinase, homodimeric domain V428_05710 PF13466 STAS domain V428_05715 PF00072 Response regulator receiver domain V428_05720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_05725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V428_05725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V428_05730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_05730 PF03466 LysR substrate binding domain V428_05735 PF01810 V428_05735 V428_05740 PF01136 V428_05740 V428_05740 PF12392 V428_05740 V428_05745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_05745 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V428_05750 PF00730 HhH-GPD superfamily base excision DNA repair protein V428_05750 PF02805 Metal binding domain of Ada V428_05750 PF06029 AlkA N-terminal domain V428_05750 PF12833 Helix-turn-helix domain V428_05760 PF02074 Carboxypeptidase Taq (M32) metallopeptidase V428_05765 PF01713 Smr domain V428_05775 PF01963 V428_05775 V428_05780 PF08921 Domain of unknown function (DUF1904) V428_05785 PF00106 short chain dehydrogenase V428_05790 PF03573 outer membrane porin, OprD family V428_05795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_05805 PF07995 Glucose / Sorbosone dehydrogenase V428_05810 PF00916 V428_05810 V428_05810 PF01740 STAS domain V428_05815 PF03976 Polyphosphate kinase 2 (PPK2) V428_05825 PF11726 V428_05825 V428_05835 PF00872 V428_05835 V428_05840 PF13649 Methyltransferase domain V428_05845 PF07883 Cupin domain V428_05850 PF00005 ABC transporter V428_05855 PF01032 FecCD transport family V428_05860 PF01497 Periplasmic binding protein V428_05865 PF00027 Cyclic nucleotide-binding domain V428_05865 PF13545 Crp-like helix-turn-helix domain V428_05870 PF00593 TonB dependent receptor V428_05870 PF07715 TonB-dependent Receptor Plug Domain V428_05880 PF00005 ABC transporter V428_05885 PF00528 Binding-protein-dependent transport system inner membrane component V428_05895 PF13649 Methyltransferase domain V428_05900 PF00593 TonB dependent receptor V428_05900 PF07715 TonB-dependent Receptor Plug Domain V428_05905 PF12833 Helix-turn-helix domain V428_05910 PF04072 Leucine carboxyl methyltransferase V428_05925 PF00176 SNF2 family N-terminal domain V428_05930 PF00270 DEAD/DEAH box helicase V428_05930 PF00271 Helicase conserved C-terminal domain V428_05950 PF00270 DEAD/DEAH box helicase V428_05950 PF00271 Helicase conserved C-terminal domain V428_05955 PF13091 PLD-like domain V428_05970 PF06508 Queuosine biosynthesis protein QueC V428_05975 PF04055 Radical SAM superfamily V428_05975 PF13394 4Fe-4S single cluster domain V428_05985 PF04002 RadC-like JAB domain V428_06000 PF10980 Protein of unknown function (DUF2787) V428_06020 PF01381 Helix-turn-helix V428_06030 PF09588 YqaJ-like viral recombinase domain V428_06035 PF06067 V428_06035 V428_06045 PF16538 V428_06045 V428_06045 PF16539 V428_06045 V428_06045 PF16548 V428_06045 V428_06055 PF02169 LPP20 lipoprotein V428_06060 PF00800 Prephenate dehydratase V428_06060 PF01817 Chorismate mutase type II V428_06065 PF13419 Haloacid dehalogenase-like hydrolase V428_06080 PF11355 V428_06080 V428_06090 PF04463 V428_06090 V428_06090 PF08349 V428_06090 V428_06095 PF13411 MerR HTH family regulatory protein V428_06100 PF00875 DNA photolyase V428_06100 PF03441 FAD binding domain of DNA photolyase V428_06105 PF12680 SnoaL-like domain V428_06110 PF00106 short chain dehydrogenase V428_06115 PF01593 Flavin containing amine oxidoreductase V428_06120 PF07103 V428_06120 V428_06125 PF02353 Mycolic acid cyclopropane synthetase V428_06130 PF11086 V428_06130 V428_06135 PF09493 V428_06135 V428_06140 PF16036 V428_06140 V428_06145 PF12915 V428_06145 V428_06150 PF00210 Ferritin-like domain V428_06160 PF03063 Prismane/CO dehydrogenase family V428_06165 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_06165 PF00175 Oxidoreductase NAD-binding domain V428_06165 PF00970 Oxidoreductase FAD-binding domain V428_06170 PF16363 V428_06170 V428_06175 PF13462 Thioredoxin V428_06185 PF00196 Bacterial regulatory proteins, luxR family V428_06185 PF03472 Autoinducer binding domain V428_06195 PF03496 ADP-ribosyltransferase exoenzyme V428_06195 PF05954 Phage late control gene D protein (GPD) V428_06200 PF13503 V428_06200 V428_06205 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) V428_06210 PF11153 V428_06210 V428_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_06215 PF03466 LysR substrate binding domain V428_06220 PF03306 Alpha-acetolactate decarboxylase V428_06225 PF00205 Thiamine pyrophosphate enzyme, central domain V428_06225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_06225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_06230 PF01965 DJ-1/PfpI family V428_06235 PF02558 Ketopantoate reductase PanE/ApbA V428_06235 PF08546 Ketopantoate reductase PanE/ApbA C terminal V428_06240 PF04461 Protein of unknown function (DUF520) V428_06245 PF03502 Nucleoside-specific channel-forming protein, Tsx V428_06250 PF13000 V428_06250 V428_06260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V428_06265 PF03923 V428_06265 V428_06270 PF05175 Methyltransferase small domain V428_06275 PF01722 BolA-like protein V428_06280 PF05896 V428_06280 V428_06280 PF11973 V428_06280 V428_06285 PF03116 V428_06285 V428_06290 PF04205 FMN-binding domain V428_06295 PF02508 V428_06295 V428_06300 PF02508 V428_06300 V428_06305 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_06305 PF00175 Oxidoreductase NAD-binding domain V428_06305 PF00970 Oxidoreductase FAD-binding domain V428_06310 PF02424 ApbE family V428_06315 PF04400 V428_06315 V428_06325 PF00817 impB/mucB/samB family V428_06325 PF11798 IMS family HHH motif V428_06325 PF11799 impB/mucB/samB family C-terminal domain V428_06330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_06330 PF00672 HAMP domain V428_06330 PF02743 Cache domain V428_06335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_06335 PF03466 LysR substrate binding domain V428_06340 PF12697 Alpha/beta hydrolase family V428_06345 PF04241 V428_06345 V428_06350 PF01728 FtsJ-like methyltransferase V428_06360 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_06365 PF01367 5'-3' exonuclease, C-terminal SAM fold V428_06365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V428_06370 PF03641 Possible lysine decarboxylase V428_06370 PF11892 Domain of unknown function (DUF3412) V428_06370 PF14793 Domain of unknown function (DUF4478) V428_06375 PF00990 GGDEF domain V428_06385 PF14489 QueF-like protein V428_06385 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term V428_06390 PF07348 Syd protein (SUKH-2) V428_06395 PF10071 V428_06395 V428_06405 PF10982 Protein of unknown function (DUF2789) V428_06410 PF11743 V428_06410 V428_06415 PF12069 V428_06415 V428_06420 PF04287 tRNA pseudouridine synthase C V428_06425 PF00849 RNA pseudouridylate synthase V428_06430 PF00258 Flavodoxin V428_06435 PF02264 LamB porin V428_06440 PF07148 V428_06440 V428_06445 PF00367 phosphotransferase system, EIIB V428_06445 PF02378 Phosphotransferase system, EIIC V428_06450 PF11944 V428_06450 V428_06455 PF00132 Bacterial transferase hexapeptide (six repeats) V428_06455 PF14602 Hexapeptide repeat of succinyl-transferase V428_06455 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal V428_06460 PF01909 Nucleotidyltransferase domain V428_06460 PF01966 HD domain V428_06460 PF08335 GlnD PII-uridylyltransferase V428_06465 PF00557 Metallopeptidase family M24 V428_06470 PF00318 Ribosomal protein S2 V428_06475 PF00889 Elongation factor TS V428_06480 PF00696 Amino acid kinase family V428_06485 PF01765 Ribosome recycling factor V428_06490 PF01255 Putative undecaprenyl diphosphate synthase V428_06495 PF01148 Cytidylyltransferase family V428_06500 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase V428_06500 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal V428_06500 PF13288 DXP reductoisomerase C-terminal domain V428_06510 PF02163 Peptidase family M50 V428_06515 PF01103 Surface antigen V428_06515 PF07244 Surface antigen variable number repeat V428_06520 PF03938 Outer membrane protein (OmpH-like) V428_06525 PF00132 Bacterial transferase hexapeptide (six repeats) V428_06525 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD V428_06530 PF07977 FabA-like domain V428_06535 PF00132 Bacterial transferase hexapeptide (six repeats) V428_06535 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 V428_06540 PF02684 V428_06540 V428_06545 PF01351 Ribonuclease HII V428_06550 PF01336 OB-fold nucleic acid binding domain V428_06550 PF02811 PHP domain V428_06550 PF07733 Bacterial DNA polymerase III alpha subunit V428_06550 PF14579 Helix-hairpin-helix motif V428_06555 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit V428_06560 PF00486 Transcriptional regulatory protein, C terminal V428_06565 PF13520 Amino acid permease V428_06570 PF01276 Orn/Lys/Arg decarboxylase, major domain V428_06570 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V428_06570 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V428_06575 PF08543 Phosphomethylpyrimidine kinase V428_06580 PF01554 MatE V428_06590 PF01490 V428_06590 V428_06595 PF12706 Beta-lactamase superfamily domain V428_06600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_06600 PF03466 LysR substrate binding domain V428_06605 PF13520 Amino acid permease V428_06610 PF13302 Acetyltransferase (GNAT) domain V428_06615 PF00005 ABC transporter V428_06620 PF16743 V428_06620 V428_06625 PF01431 Peptidase family M13 V428_06625 PF05649 Peptidase family M13 V428_06630 PF01171 PP-loop family V428_06630 PF09179 TilS substrate binding domain V428_06630 PF11734 TilS substrate C-terminal domain V428_06635 PF00990 GGDEF domain V428_06640 PF00999 Sodium/hydrogen exchanger family V428_06640 PF02080 TrkA-C domain V428_06640 PF02254 TrkA-N domain V428_06645 PF01734 Patatin-like phospholipase V428_06650 PF12146 Putative lysophospholipase V428_06655 PF00440 Bacterial regulatory proteins, tetR family V428_06660 PF00072 Response regulator receiver domain V428_06660 PF00196 Bacterial regulatory proteins, luxR family V428_06665 PF13409 Glutathione S-transferase, N-terminal domain V428_06670 PF00128 Alpha amylase, catalytic domain V428_06680 PF04138 V428_06680 V428_06685 PF00535 Glycosyl transferase family 2 V428_06695 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_06700 PF01471 Putative peptidoglycan binding domain V428_06700 PF03734 L,D-transpeptidase catalytic domain V428_06705 PF05951 V428_06705 V428_06715 PF03458 V428_06715 V428_06720 PF07264 Etoposide-induced protein 2 V428_06725 PF02463 RecF/RecN/SMC N terminal domain V428_06730 PF04354 ZipA, C-terminal FtsZ-binding domain V428_06735 PF00533 BRCA1 C Terminus (BRCT) domain V428_06735 PF01653 NAD-dependent DNA ligase adenylation domain V428_06735 PF03119 NAD-dependent DNA ligase C4 zinc finger domain V428_06735 PF03120 NAD-dependent DNA ligase OB-fold domain V428_06735 PF12826 Helix-hairpin-helix motif V428_06735 PF14520 Helix-hairpin-helix domain V428_06740 PF04392 ABC transporter substrate binding protein V428_06745 PF03477 ATP cone domain V428_06745 PF13597 Anaerobic ribonucleoside-triphosphate reductase V428_06750 PF13353 4Fe-4S single cluster domain V428_06755 PF01679 V428_06755 V428_06760 PF03544 Gram-negative bacterial TonB protein C-terminal V428_06765 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme V428_06770 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_06775 PF11168 V428_06775 V428_06775 PF13515 V428_06775 V428_06780 PF13437 HlyD family secretion protein V428_06780 PF13533 Biotin-lipoyl like V428_06785 PF01047 MarR family V428_06795 PF03390 V428_06795 V428_06800 PF00390 Malic enzyme, N-terminal domain V428_06800 PF03949 Malic enzyme, NAD binding domain V428_06805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_06805 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V428_06805 PF17203 V428_06805 V428_06810 PF00072 Response regulator receiver domain V428_06810 PF12431 V428_06810 V428_06815 PF00892 EamA-like transporter family V428_06820 PF02311 AraC-like ligand binding domain V428_06820 PF12833 Helix-turn-helix domain V428_06825 PF00171 Aldehyde dehydrogenase family V428_06830 PF00158 Sigma-54 interaction domain V428_06830 PF01590 GAF domain V428_06830 PF02954 Bacterial regulatory protein, Fis family V428_06835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_06835 PF02770 Acyl-CoA dehydrogenase, middle domain V428_06835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_06840 PF02515 CoA-transferase family III V428_06845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_06850 PF00072 Response regulator receiver domain V428_06850 PF00486 Transcriptional regulatory protein, C terminal V428_06855 PF00512 His Kinase A (phospho-acceptor) domain V428_06855 PF00989 PAS fold V428_06855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_06855 PF11808 V428_06855 V428_06860 PF12849 PBP superfamily domain V428_06865 PF01435 Peptidase family M48 V428_06870 PF00583 Acetyltransferase (GNAT) family V428_06875 PF00480 ROK family V428_06880 PF03932 CutC family V428_06885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_06885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_06890 PF00005 ABC transporter V428_06895 PF01061 V428_06895 V428_06900 PF11006 V428_06900 V428_06905 PF06526 Protein of unknown function (DUF1107) V428_06910 PF00293 NUDIX domain V428_06920 PF08534 Redoxin V428_06925 PF01699 Sodium/calcium exchanger protein V428_06930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V428_06930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_06935 PF01235 V428_06935 V428_06940 PF03099 Biotin/lipoate A/B protein ligase family V428_06945 PF00860 Permease family V428_06950 PF00990 GGDEF domain V428_06955 PF10692 Protein of unknown function (DUF2498) V428_06960 PF01554 MatE V428_06965 PF12833 Helix-turn-helix domain V428_06970 PF00390 Malic enzyme, N-terminal domain V428_06970 PF03949 Malic enzyme, NAD binding domain V428_06975 PF00691 OmpA family V428_06975 PF01389 OmpA-like transmembrane domain V428_06980 PF00691 OmpA family V428_06980 PF01389 OmpA-like transmembrane domain V428_06985 PF00691 OmpA family V428_06985 PF01389 OmpA-like transmembrane domain V428_06995 PF01381 Helix-turn-helix V428_07000 PF00209 Sodium:neurotransmitter symporter family V428_07005 PF01734 Patatin-like phospholipase V428_07010 PF00990 GGDEF domain V428_07010 PF02743 Cache domain V428_07015 PF16576 V428_07015 V428_07020 PF00873 AcrB/AcrD/AcrF family V428_07030 PF04055 Radical SAM superfamily V428_07030 PF08497 V428_07030 V428_07030 PF11842 V428_07030 V428_07050 PF05163 DinB family V428_07055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_07060 PF02075 Crossover junction endodeoxyribonuclease RuvC V428_07065 PF00230 Major intrinsic protein V428_07070 PF01464 Transglycosylase SLT domain V428_07075 PF00128 Alpha amylase, catalytic domain V428_07080 PF01551 Peptidase family M23 V428_07085 PF13673 Acetyltransferase (GNAT) domain V428_07090 PF07273 Protein of unknown function (DUF1439) V428_07095 PF13091 PLD-like domain V428_07100 PF06097 V428_07100 V428_07105 PF00551 Formyl transferase V428_07105 PF01842 ACT domain V428_07110 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V428_07115 PF04728 Lipoprotein leucine-zipper V428_07120 PF00085 Thioredoxin V428_07120 PF14559 Tetratricopeptide repeat V428_07120 PF14561 Tetratricopeptide repeat V428_07125 PF01648 4'-phosphopantetheinyl transferase superfamily V428_07130 PF00877 NlpC/P60 family V428_07135 PF05971 Protein of unknown function (DUF890) V428_07140 PF01575 MaoC like domain V428_07145 PF04338 Protein of unknown function, DUF481 V428_07150 PF03734 L,D-transpeptidase catalytic domain V428_07160 PF00176 SNF2 family N-terminal domain V428_07160 PF00271 Helicase conserved C-terminal domain V428_07160 PF13091 PLD-like domain V428_07165 PF06634 V428_07165 V428_07170 PF12635 V428_07170 V428_07170 PF14267 V428_07170 V428_07175 PF04465 V428_07175 V428_07175 PF13290 V428_07175 V428_07180 PF01402 Ribbon-helix-helix protein, copG family V428_07220 PF04002 RadC-like JAB domain V428_07235 PF10980 Protein of unknown function (DUF2787) V428_07250 PF01381 Helix-turn-helix V428_07255 PF06067 V428_07255 V428_07270 PF04055 Radical SAM superfamily V428_07275 PF13091 PLD-like domain V428_07285 PF11726 V428_07285 V428_07290 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_07300 PF00589 Phage integrase family V428_07300 PF13356 Domain of unknown function (DUF4102) V428_07305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_07310 PF00528 Binding-protein-dependent transport system inner membrane component V428_07315 PF00528 Binding-protein-dependent transport system inner membrane component V428_07320 PF00005 ABC transporter V428_07325 PF00465 Iron-containing alcohol dehydrogenase V428_07330 PF05025 RbsD / FucU transport protein family V428_07335 PF00596 Class II Aldolase and Adducin N-terminal domain V428_07340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V428_07340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_07345 PF02952 L-fucose isomerase, C-terminal domain V428_07345 PF07881 L-fucose isomerase, first N-terminal domain V428_07345 PF07882 L-fucose isomerase, second N-terminal domain V428_07350 PF07690 Major Facilitator Superfamily V428_07355 PF00455 V428_07355 V428_07355 PF08220 DeoR-like helix-turn-helix domain V428_07360 PF00141 Peroxidase V428_07365 PF00701 Dihydrodipicolinate synthetase family V428_07370 PF01380 SIS domain V428_07370 PF01418 Helix-turn-helix domain, rpiR family V428_07375 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase V428_07380 PF00480 ROK family V428_07385 PF00474 Sodium:solute symporter family V428_07390 PF04074 Domain of unknown function (DUF386) V428_07400 PF06048 V428_07400 V428_07410 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_07415 PF00589 Phage integrase family V428_07415 PF13356 Domain of unknown function (DUF4102) V428_07420 PF00893 Small Multidrug Resistance protein V428_07425 PF00893 Small Multidrug Resistance protein V428_07435 PF06130 V428_07435 V428_07440 PF00936 BMC domain V428_07445 PF04055 Radical SAM superfamily V428_07445 PF13187 4Fe-4S dicluster domain V428_07450 PF01228 Glycine radical V428_07450 PF02901 Pyruvate formate lyase V428_07455 PF00465 Iron-containing alcohol dehydrogenase V428_07460 PF03319 Ethanolamine utilisation protein EutN/carboxysome V428_07465 PF00171 Aldehyde dehydrogenase family V428_07470 PF00936 BMC domain V428_07475 PF00936 BMC domain V428_07480 PF00936 BMC domain V428_07485 PF15941 V428_07485 V428_07490 PF00486 Transcriptional regulatory protein, C terminal V428_07495 PF00440 Bacterial regulatory proteins, tetR family V428_07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_07500 PF03466 LysR substrate binding domain V428_07505 PF02634 FdhD/NarQ family V428_07510 PF00384 Molybdopterin oxidoreductase V428_07510 PF01568 Molydopterin dinucleotide binding domain V428_07525 PF00440 Bacterial regulatory proteins, tetR family V428_07530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_07530 PF02770 Acyl-CoA dehydrogenase, middle domain V428_07530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_07530 PF09317 V428_07530 V428_07535 PF00873 AcrB/AcrD/AcrF family V428_07540 PF16576 V428_07540 V428_07545 PF00224 Pyruvate kinase, barrel domain V428_07545 PF02887 Pyruvate kinase, alpha/beta domain V428_07550 PF01380 SIS domain V428_07550 PF01418 Helix-turn-helix domain, rpiR family V428_07555 PF02685 Glucokinase V428_07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_07565 PF00072 Response regulator receiver domain V428_07565 PF00486 Transcriptional regulatory protein, C terminal V428_07570 PF00005 ABC transporter V428_07570 PF00664 ABC transporter transmembrane region V428_07575 PF13437 HlyD family secretion protein V428_07580 PF00005 ABC transporter V428_07580 PF00664 ABC transporter transmembrane region V428_07595 PF07634 V428_07595 V428_07595 PF11713 Peptidase C80 family V428_07595 PF12697 Alpha/beta hydrolase family V428_07595 PF16671 V428_07595 V428_07600 PF00583 Acetyltransferase (GNAT) family V428_07605 PF00919 Uncharacterized protein family UPF0004 V428_07605 PF01938 TRAM domain V428_07605 PF04055 Radical SAM superfamily V428_07610 PF01966 HD domain V428_07620 PF02049 V428_07620 V428_07625 PF01514 Secretory protein of YscJ/FliF family V428_07625 PF08345 V428_07625 V428_07630 PF01706 FliG C-terminal domain V428_07630 PF14841 FliG middle domain V428_07630 PF14842 FliG N-terminal domain V428_07635 PF02108 V428_07635 V428_07640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_07645 PF02050 Flagellar FliJ protein V428_07650 PF02120 Flagellar hook-length control protein FliK V428_07655 PF03748 V428_07655 V428_07660 PF01052 Surface presentation of antigens (SPOA) V428_07660 PF02154 Flagellar motor switch protein FliM V428_07665 PF01052 Surface presentation of antigens (SPOA) V428_07670 PF04347 V428_07670 V428_07675 PF00813 V428_07675 V428_07680 PF01313 V428_07680 V428_07685 PF01311 V428_07685 V428_07690 PF01312 FlhB HrpN YscU SpaS Family V428_07695 PF00771 FHIPEP family V428_07700 PF00448 SRP54-type protein, GTPase domain V428_07705 PF10609 ParA/MinD ATPase like V428_07710 PF04539 Sigma-70 region 3 V428_07710 PF04542 Sigma-70 region 2 V428_07710 PF04545 Sigma-70, region 4 V428_07715 PF00072 Response regulator receiver domain V428_07720 PF04344 Chemotaxis phosphatase, CheZ V428_07725 PF01584 CheW-like domain V428_07725 PF01627 Hpt domain V428_07725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_07725 PF02895 Signal transducing histidine kinase, homodimeric domain V428_07730 PF00072 Response regulator receiver domain V428_07730 PF01339 CheB methylesterase V428_07735 PF01618 V428_07735 V428_07740 PF00691 OmpA family V428_07740 PF13677 V428_07740 V428_07745 PF13614 AAA domain V428_07750 PF01584 CheW-like domain V428_07755 PF01584 CheW-like domain V428_07760 PF10975 V428_07760 V428_07765 PF00005 ABC transporter V428_07770 PF03379 V428_07770 V428_07775 PF01578 V428_07775 V428_07780 PF04995 V428_07780 V428_07785 PF03100 CcmE V428_07790 PF01578 V428_07790 V428_07790 PF16327 V428_07790 V428_07795 PF08534 Redoxin V428_07800 PF03918 Cytochrome C biogenesis protein V428_07805 PF14559 Tetratricopeptide repeat V428_07810 PF04333 V428_07810 V428_07815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V428_07815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V428_07820 PF00462 Glutaredoxin V428_07825 PF01189 NOL1/NOP2/sun family V428_07830 PF13583 Metallo-peptidase family M12B Reprolysin-like V428_07840 PF01243 Pyridoxamine 5'-phosphate oxidase V428_07840 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region V428_07845 PF00043 Glutathione S-transferase, C-terminal domain V428_07845 PF13417 Glutathione S-transferase, N-terminal domain V428_07850 PF13302 Acetyltransferase (GNAT) domain V428_07855 PF13527 Acetyltransferase (GNAT) domain V428_07865 PF08007 Cupin superfamily protein V428_07870 PF00206 Lyase V428_07870 PF08328 Adenylosuccinate lyase C-terminal V428_07875 PF04356 Protein of unknown function (DUF489) V428_07880 PF03054 tRNA methyl transferase V428_07885 PF00293 NUDIX domain V428_07890 PF00849 RNA pseudouridylate synthase V428_07895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_07895 PF00381 PTS HPr component phosphorylation site V428_07900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_07905 PF07690 Major Facilitator Superfamily V428_07910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_07910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_07910 PF02378 Phosphotransferase system, EIIC V428_07920 PF13302 Acetyltransferase (GNAT) domain V428_07925 PF13508 Acetyltransferase (GNAT) domain V428_07930 PF13508 Acetyltransferase (GNAT) domain V428_07940 PF00533 BRCA1 C Terminus (BRCT) domain V428_07945 PF00356 Bacterial regulatory proteins, lacI family V428_07945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_07950 PF00367 phosphotransferase system, EIIB V428_07950 PF02378 Phosphotransferase system, EIIC V428_07955 PF00155 Aminotransferase class I and II V428_07965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_07965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_07965 PF02378 Phosphotransferase system, EIIC V428_07980 PF01238 Phosphomannose isomerase type I V428_07985 PF12833 Helix-turn-helix domain V428_07990 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_08000 PF00291 Pyridoxal-phosphate dependent enzyme V428_08005 PF02447 V428_08005 V428_08010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_08010 PF03466 LysR substrate binding domain V428_08030 PF07751 V428_08030 V428_08035 PF01420 Type I restriction modification DNA specificity domain V428_08040 PF02384 N-6 DNA Methylase V428_08040 PF12161 HsdM N-terminal domain V428_08045 PF00271 Helicase conserved C-terminal domain V428_08045 PF04851 Type III restriction enzyme, res subunit V428_08045 PF08463 V428_08045 V428_08050 PF00717 Peptidase S24-like V428_08060 PF00665 Integrase core domain V428_08060 PF02316 Mu DNA-binding domain V428_08060 PF09299 Mu transposase, C-terminal V428_08065 PF13401 AAA domain V428_08090 PF11363 V428_08090 V428_08110 PF06252 V428_08110 V428_08115 PF08765 Mor transcription activator family V428_08130 PF05838 Glycosyl hydrolase 108 V428_08130 PF09374 Predicted Peptidoglycan domain V428_08145 PF10805 V428_08145 V428_08155 PF11985 V428_08155 V428_08160 PF03237 Terminase-like family V428_08165 PF06074 V428_08165 V428_08170 PF04233 V428_08170 V428_08180 PF05069 V428_08180 V428_08185 PF10123 V428_08185 V428_08190 PF10124 V428_08190 V428_08195 PF07498 Rho termination factor, N-terminal domain V428_08200 PF07030 V428_08200 V428_08270 PF01668 SmpB protein V428_08275 PF03364 Polyketide cyclase / dehydrase and lipid transport V428_08280 PF03658 RnfH family Ubiquitin V428_08285 PF13460 NADH(P)-binding V428_08290 PF04355 SmpA / OmlA family V428_08305 PF04964 V428_08305 V428_08315 PF08666 SAF domain V428_08315 PF16976 V428_08315 V428_08320 PF00263 V428_08320 V428_08320 PF13629 V428_08320 V428_08330 PF10609 ParA/MinD ATPase like V428_08335 PF00437 Type II/IV secretion system protein V428_08340 PF00482 Type II secretion system (T2SS), protein F V428_08345 PF00482 Type II secretion system (T2SS), protein F V428_08350 PF13432 Tetratricopeptide repeat V428_08355 PF07811 V428_08355 V428_08370 PF00465 Iron-containing alcohol dehydrogenase V428_08375 PF01048 Phosphorylase superfamily V428_08380 PF00849 RNA pseudouridylate synthase V428_08385 PF01156 Inosine-uridine preferring nucleoside hydrolase V428_08395 PF09904 Winged helix-turn helix V428_08400 PF07509 V428_08400 V428_08405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_08405 PF00672 HAMP domain V428_08410 PF01810 V428_08410 V428_08415 PF07313 Protein of unknown function (DUF1460) V428_08420 PF00999 Sodium/hydrogen exchanger family V428_08425 PF07555 beta-N-acetylglucosaminidase V428_08430 PF00999 Sodium/hydrogen exchanger family V428_08430 PF02080 TrkA-C domain V428_08430 PF03471 Transporter associated domain V428_08440 PF02557 D-alanyl-D-alanine carboxypeptidase V428_08445 PF01546 Peptidase family M20/M25/M40 V428_08445 PF07687 Peptidase dimerisation domain V428_08450 PF03960 ArsC family V428_08455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_08455 PF03466 LysR substrate binding domain V428_08465 PF03606 V428_08465 V428_08470 PF01546 Peptidase family M20/M25/M40 V428_08470 PF07687 Peptidase dimerisation domain V428_08475 PF01902 ATP-binding region V428_08480 PF03605 V428_08480 V428_08485 PF00152 tRNA synthetases class II (D, K and N) V428_08485 PF01336 OB-fold nucleic acid binding domain V428_08495 PF00672 HAMP domain V428_08500 PF00202 Aminotransferase class-III V428_08505 PF04055 Radical SAM superfamily V428_08505 PF06968 Biotin and Thiamin Synthesis associated domain V428_08510 PF00155 Aminotransferase class I and II V428_08515 PF08241 Methyltransferase domain V428_08520 PF13500 AAA domain V428_08525 PF01435 Peptidase family M48 V428_08530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_08535 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_08535 PF00175 Oxidoreductase NAD-binding domain V428_08535 PF00970 Oxidoreductase FAD-binding domain V428_08535 PF03473 MOSC domain V428_08535 PF03476 MOSC N-terminal beta barrel domain V428_08540 PF00037 4Fe-4S binding domain V428_08540 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_08540 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_08545 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V428_08545 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V428_08545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_08545 PF10371 Domain of unknown function V428_08545 PF12838 4Fe-4S dicluster domain V428_08545 PF17147 V428_08545 V428_08550 PF01804 Penicillin amidase V428_08555 PF12833 Helix-turn-helix domain V428_08560 PF04325 Protein of unknown function (DUF465) V428_08570 PF01554 MatE V428_08575 PF00916 V428_08575 V428_08575 PF01740 STAS domain V428_08580 PF06042 Bacterial protein of unknown function (DUF925) V428_08585 PF14542 GCN5-related N-acetyl-transferase V428_08590 PF00291 Pyridoxal-phosphate dependent enzyme V428_08600 PF00465 Iron-containing alcohol dehydrogenase V428_08610 PF00440 Bacterial regulatory proteins, tetR family V428_08615 PF00171 Aldehyde dehydrogenase family V428_08625 PF00877 NlpC/P60 family V428_08630 PF07968 Leukocidin/Hemolysin toxin family V428_08630 PF12563 Hemolytic toxin N terminal V428_08635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_08635 PF03466 LysR substrate binding domain V428_08640 PF00578 AhpC/TSA family V428_08640 PF10417 C-terminal domain of 1-Cys peroxiredoxin V428_08645 PF14397 V428_08645 V428_08650 PF14400 V428_08650 V428_08650 PF14402 V428_08650 V428_08655 PF05618 Putative ATP-dependant zinc protease V428_08660 PF08003 Protein of unknown function (DUF1698) V428_08665 PF13649 Methyltransferase domain V428_08670 PF01904 Protein of unknown function DUF72 V428_08675 PF00152 tRNA synthetases class II (D, K and N) V428_08675 PF01336 OB-fold nucleic acid binding domain V428_08675 PF02938 GAD domain V428_08680 PF01709 Transcriptional regulator V428_08685 PF00884 Sulfatase V428_08685 PF08019 V428_08685 V428_08695 PF00480 ROK family V428_08700 PF01979 Amidohydrolase family V428_08705 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V428_08710 PF00367 phosphotransferase system, EIIB V428_08710 PF02378 Phosphotransferase system, EIIC V428_08715 PF00728 Glycosyl hydrolase family 20, catalytic domain V428_08715 PF02838 Glycosyl hydrolase family 20, domain 2 V428_08715 PF03173 Putative carbohydrate binding domain V428_08715 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain V428_08720 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_08720 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain V428_08725 PF01475 Ferric uptake regulator family V428_08730 PF14539 Domain of unknown function (DUF4442) V428_08735 PF00258 Flavodoxin V428_08740 PF01402 Ribbon-helix-helix protein, copG family V428_08745 PF10981 V428_08745 V428_08750 PF12697 Alpha/beta hydrolase family V428_08755 PF03925 SeqA protein V428_08755 PF17206 V428_08755 V428_08760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V428_08760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V428_08760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V428_08760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V428_08765 PF00892 EamA-like transporter family V428_08770 PF12802 MarR family V428_08775 PF13406 Transglycosylase SLT domain V428_08780 PF01066 CDP-alcohol phosphatidyltransferase V428_08785 PF00005 ABC transporter V428_08795 PF13416 Bacterial extracellular solute-binding protein V428_08800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_08800 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_08800 PF09335 V428_08800 V428_08805 PF02627 Carboxymuconolactone decarboxylase family V428_08810 PF07386 V428_08810 V428_08815 PF01625 Peptide methionine sulfoxide reductase V428_08820 PF00639 PPIC-type PPIASE domain V428_08830 PF01103 Surface antigen V428_08830 PF07244 Surface antigen variable number repeat V428_08830 PF17243 V428_08830 V428_08835 PF04357 V428_08835 V428_08850 PF11993 V428_08850 V428_08855 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V428_08860 PF00563 EAL domain V428_08860 PF00990 GGDEF domain V428_08860 PF13426 PAS domain V428_08865 PF01464 Transglycosylase SLT domain V428_08865 PF14718 Soluble lytic murein transglycosylase L domain V428_08870 PF00356 Bacterial regulatory proteins, lacI family V428_08870 PF13377 Periplasmic binding protein-like domain V428_08880 PF03061 Thioesterase superfamily V428_08890 PF03372 Endonuclease/Exonuclease/phosphatase family V428_08895 PF01464 Transglycosylase SLT domain V428_08895 PF01476 LysM domain V428_08900 PF00753 Metallo-beta-lactamase superfamily V428_08900 PF16123 V428_08900 V428_08905 PF08241 Methyltransferase domain V428_08910 PF00075 RNase H V428_08915 PF00929 Exonuclease V428_08925 PF01966 HD domain V428_08925 PF11849 V428_08925 V428_08935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_08935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_08935 PF09317 V428_08935 V428_08940 PF13580 SIS domain V428_08945 PF13230 Glutamine amidotransferases class-II V428_08950 PF01627 Hpt domain V428_08955 PF01933 Uncharacterised protein family UPF0052 V428_08960 PF08495 V428_08960 V428_08960 PF10442 V428_08960 V428_08965 PF00072 Response regulator receiver domain V428_08965 PF00512 His Kinase A (phospho-acceptor) domain V428_08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_08970 PF02190 ATP-dependent protease La (LON) domain V428_08975 PF00072 Response regulator receiver domain V428_08975 PF00196 Bacterial regulatory proteins, luxR family V428_08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_08980 PF07730 Histidine kinase V428_08980 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term V428_08985 PF04055 Radical SAM superfamily V428_08985 PF06463 Molybdenum Cofactor Synthesis C V428_08985 PF13353 4Fe-4S single cluster domain V428_08990 PF12838 4Fe-4S dicluster domain V428_08990 PF13237 4Fe-4S dicluster domain V428_08995 PF03927 NapD protein V428_09005 PF00384 Molybdopterin oxidoreductase V428_09005 PF01568 Molydopterin dinucleotide binding domain V428_09005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_09005 PF10518 TAT (twin-arginine translocation) pathway signal sequence V428_09010 PF12800 4Fe-4S binding domain V428_09010 PF12838 4Fe-4S dicluster domain V428_09015 PF12801 V428_09015 V428_09020 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) V428_09025 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_09030 PF00994 Probable molybdopterin binding domain V428_09035 PF01967 MoaC family V428_09040 PF02597 ThiS family V428_09045 PF02391 MoaE protein V428_09050 PF13531 Bacterial extracellular solute-binding protein V428_09055 PF00528 Binding-protein-dependent transport system inner membrane component V428_09060 PF00005 ABC transporter V428_09060 PF03459 TOBE domain V428_09065 PF12697 Alpha/beta hydrolase family V428_09070 PF00899 ThiF family V428_09075 PF00994 Probable molybdopterin binding domain V428_09075 PF03453 MoeA N-terminal region (domain I and II) V428_09075 PF03454 MoeA C-terminal region (domain IV) V428_09080 PF01227 GTP cyclohydrolase I V428_09085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_09085 PF00672 HAMP domain V428_09085 PF12729 V428_09085 V428_09090 PF01268 Formate--tetrahydrofolate ligase V428_09100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_09100 PF03466 LysR substrate binding domain V428_09105 PF04264 YceI-like domain V428_09115 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain V428_09120 PF10262 Rdx family V428_09125 PF01553 Acyltransferase V428_09125 PF13444 Acetyltransferase (GNAT) domain V428_09130 PF01546 Peptidase family M20/M25/M40 V428_09130 PF07687 Peptidase dimerisation domain V428_09135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_09150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_09155 PF03222 Tryptophan/tyrosine permease family V428_09160 PF01042 Endoribonuclease L-PSP V428_09165 PF03313 V428_09165 V428_09170 PF08348 V428_09170 V428_09170 PF13309 V428_09170 V428_09175 PF00300 Histidine phosphatase superfamily (branch 1) V428_09180 PF00271 Helicase conserved C-terminal domain V428_09180 PF04851 Type III restriction enzyme, res subunit V428_09180 PF11907 V428_09180 V428_09180 PF13091 PLD-like domain V428_09190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_09195 PF12146 Putative lysophospholipase V428_09200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase V428_09200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain V428_09210 PF00849 RNA pseudouridylate synthase V428_09210 PF01479 S4 domain V428_09215 PF07690 Major Facilitator Superfamily V428_09220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V428_09225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_09225 PF03466 LysR substrate binding domain V428_09230 PF07690 Major Facilitator Superfamily V428_09235 PF14526 Integron-associated effector binding protein V428_09245 PF03061 Thioesterase superfamily V428_09255 PF04391 V428_09255 V428_09260 PF00583 Acetyltransferase (GNAT) family V428_09265 PF00155 Aminotransferase class I and II V428_09265 PF00392 Bacterial regulatory proteins, gntR family V428_09270 PF01654 V428_09270 V428_09275 PF02322 V428_09275 V428_09280 PF08173 V428_09280 V428_09285 PF07690 Major Facilitator Superfamily V428_09290 PF00248 Aldo/keto reductase family V428_09295 PF03992 Antibiotic biosynthesis monooxygenase V428_09300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_09310 PF03466 LysR substrate binding domain V428_09315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V428_09315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_09320 PF00230 Major intrinsic protein V428_09325 PF07690 Major Facilitator Superfamily V428_09330 PF00455 V428_09330 V428_09330 PF08220 DeoR-like helix-turn-helix domain V428_09340 PF01266 FAD dependent oxidoreductase V428_09340 PF16901 V428_09340 V428_09345 PF03009 Glycerophosphoryl diester phosphodiesterase family V428_09350 PF00793 DAHP synthetase I family V428_09355 PF01817 Chorismate mutase type II V428_09355 PF02153 Prephenate dehydrogenase V428_09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_09360 PF03466 LysR substrate binding domain V428_09365 PF04219 V428_09365 V428_09370 PF03974 Ecotin V428_09375 PF07603 V428_09375 V428_09380 PF07603 V428_09380 V428_09385 PF01483 Proprotein convertase P-domain V428_09385 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase V428_09390 PF00326 Prolyl oligopeptidase family V428_09390 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_09395 PF00593 TonB dependent receptor V428_09395 PF07715 TonB-dependent Receptor Plug Domain V428_09400 PF00884 Sulfatase V428_09400 PF11893 V428_09400 V428_09405 PF07208 Protein of unknown function (DUF1414) V428_09410 PF04245 V428_09410 V428_09415 PF13416 Bacterial extracellular solute-binding protein V428_09420 PF00528 Binding-protein-dependent transport system inner membrane component V428_09420 PF14785 Maltose transport system permease protein MalF P2 domain V428_09425 PF00528 Binding-protein-dependent transport system inner membrane component V428_09430 PF00005 ABC transporter V428_09430 PF08402 TOBE domain V428_09435 PF03976 Polyphosphate kinase 2 (PPK2) V428_09440 PF00561 alpha/beta hydrolase fold V428_09445 PF06629 V428_09445 V428_09450 PF01594 V428_09450 V428_09460 PF01435 Peptidase family M48 V428_09460 PF14559 Tetratricopeptide repeat V428_09465 PF00578 AhpC/TSA family V428_09470 PF03960 ArsC family V428_09475 PF09842 V428_09475 V428_09485 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family V428_09490 PF04336 V428_09490 V428_09495 PF01979 Amidohydrolase family V428_09500 PF03956 V428_09500 V428_09505 PF00005 ABC transporter V428_09510 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_09515 PF00528 Binding-protein-dependent transport system inner membrane component V428_09520 PF00528 Binding-protein-dependent transport system inner membrane component V428_09525 PF01891 Cobalt uptake substrate-specific transmembrane region V428_09530 PF04055 Radical SAM superfamily V428_09530 PF13353 4Fe-4S single cluster domain V428_09535 PF00563 EAL domain V428_09535 PF00989 PAS fold V428_09535 PF00990 GGDEF domain V428_09535 PF01590 GAF domain V428_09540 PF00581 Rhodanese-like domain V428_09540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_09540 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_09545 PF07885 Ion channel V428_09550 PF11168 V428_09550 V428_09555 PF16576 V428_09555 V428_09560 PF02321 Outer membrane efflux protein V428_09565 PF01594 V428_09565 V428_09570 PF01546 Peptidase family M20/M25/M40 V428_09570 PF07687 Peptidase dimerisation domain V428_09575 PF00207 Alpha-2-macroglobulin family V428_09575 PF01835 MG2 domain V428_09575 PF07703 Alpha-2-macroglobulin family N-terminal region V428_09575 PF11974 Alpha-2-macroglobulin MG1 domain V428_09580 PF00905 Penicillin binding protein transpeptidase domain V428_09580 PF00912 Transglycosylase V428_09580 PF06832 V428_09580 V428_09590 PF02568 Thiamine biosynthesis protein (ThiI) V428_09590 PF02926 THUMP domain V428_09600 PF03458 V428_09600 V428_09605 PF00669 Bacterial flagellin N-terminal helical region V428_09605 PF00700 Bacterial flagellin C-terminal helical region V428_09610 PF00669 Bacterial flagellin N-terminal helical region V428_09610 PF00700 Bacterial flagellin C-terminal helical region V428_09620 PF01527 Transposase V428_09630 PF03646 FlaG protein V428_09635 PF02465 V428_09635 V428_09635 PF07195 V428_09635 V428_09635 PF07196 Flagellin hook IN motif V428_09640 PF02561 Flagellar protein FliS V428_09670 PF03102 NeuB family V428_09670 PF08666 SAF domain V428_09675 PF04101 Glycosyltransferase family 28 C-terminal domain V428_09675 PF13302 Acetyltransferase (GNAT) domain V428_09680 PF00202 Aminotransferase class-III V428_09685 PF02348 Cytidylyltransferase V428_09690 PF00248 Aldo/keto reductase family V428_09695 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_09700 PF02719 Polysaccharide biosynthesis protein V428_09705 PF01497 Periplasmic binding protein V428_09710 PF03186 V428_09710 V428_09715 PF01048 Phosphorylase superfamily V428_09720 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_09725 PF02535 V428_09725 V428_09730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_09730 PF00672 HAMP domain V428_09730 PF12729 V428_09730 V428_09735 PF00459 Inositol monophosphatase family V428_09745 PF00043 Glutathione S-transferase, C-terminal domain V428_09745 PF02798 Glutathione S-transferase, N-terminal domain V428_09750 PF07690 Major Facilitator Superfamily V428_09755 PF05164 Cell division protein ZapA V428_09760 PF03695 Uncharacterised protein family (UPF0149) V428_09765 PF01494 FAD binding domain V428_09770 PF01494 FAD binding domain V428_09775 PF01571 Aminomethyltransferase folate-binding domain V428_09775 PF08669 Glycine cleavage T-protein C-terminal barrel domain V428_09780 PF01597 Glycine cleavage H-protein V428_09785 PF02347 Glycine cleavage system P-protein V428_09790 PF12840 Helix-turn-helix domain V428_09795 PF01758 Sodium Bile acid symporter family V428_09800 PF03960 ArsC family V428_09805 PF08241 Methyltransferase domain V428_09815 PF07690 Major Facilitator Superfamily V428_09820 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_09820 PF13192 Thioredoxin domain V428_09825 PF00578 AhpC/TSA family V428_09825 PF10417 C-terminal domain of 1-Cys peroxiredoxin V428_09830 PF00571 CBS domain V428_09835 PF02547 Queuosine biosynthesis protein V428_09840 PF01702 Queuine tRNA-ribosyltransferase V428_09845 PF02699 Preprotein translocase subunit V428_09850 PF02355 Protein export membrane protein V428_09850 PF07549 SecD/SecF GG Motif V428_09850 PF13721 SecD export protein N-terminal TM region V428_09855 PF02355 Protein export membrane protein V428_09855 PF07549 SecD/SecF GG Motif V428_09860 PF00581 Rhodanese-like domain V428_09865 PF00515 Tetratricopeptide repeat V428_09870 PF01136 V428_09870 V428_09875 PF01136 V428_09875 V428_09880 PF02036 SCP-2 sterol transfer family V428_09890 PF00588 SpoU rRNA Methylase family V428_09895 PF02082 Transcriptional regulator V428_09900 PF00266 Aminotransferase class-V V428_09905 PF01592 NifU-like N terminal domain V428_09910 PF01521 Iron-sulphur cluster biosynthesis V428_09915 PF07743 HSCB C-terminal oligomerisation domain V428_09920 PF00012 Hsp70 protein V428_09925 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_09930 PF00883 Cytosol aminopeptidase family, catalytic domain V428_09930 PF12404 V428_09930 V428_09935 PF00883 Cytosol aminopeptidase family, catalytic domain V428_09935 PF12404 V428_09935 V428_09940 PF00334 Nucleoside diphosphate kinase V428_09945 PF04055 Radical SAM superfamily V428_09950 PF13181 Tetratricopeptide repeat V428_09950 PF13431 Tetratricopeptide repeat V428_09955 PF13413 Helix-turn-helix domain V428_09955 PF13464 V428_09955 V428_09960 PF04551 GcpE protein V428_09965 PF03129 Anticodon binding domain V428_09965 PF13393 Histidyl-tRNA synthetase V428_09970 PF09976 Tetratricopeptide repeat V428_09975 PF13360 PQQ-like domain V428_09975 PF13570 PQQ-like domain V428_09980 PF01926 50S ribosome-binding GTPase V428_09980 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal V428_09985 PF07191 zinc-ribbons V428_09990 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_09990 PF01464 Transglycosylase SLT domain V428_09995 PF02769 AIR synthase related protein, C-terminal domain V428_09995 PF13507 CobB/CobQ-like glutamine amidotransferase domain V428_10000 PF12762 V428_10000 V428_10005 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains V428_10010 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains V428_10015 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains V428_10015 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V428_10020 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L V428_10025 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 V428_10030 PF12838 4Fe-4S dicluster domain V428_10035 PF00146 NADH dehydrogenase V428_10040 PF00384 Molybdopterin oxidoreductase V428_10040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_10040 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V428_10040 PF13510 2Fe-2S iron-sulfur cluster binding domain V428_10045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V428_10045 PF10531 SLBB domain V428_10045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region V428_10050 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin V428_10055 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit V428_10055 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit V428_10060 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_10065 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 V428_10070 PF00691 OmpA family V428_10070 PF13677 V428_10070 V428_10075 PF01618 V428_10075 V428_10085 PF04536 TLP18 V428_10090 PF04536 TLP18 V428_10095 PF04011 LemA family V428_10100 PF03411 Penicillin-insensitive murein endopeptidase V428_10110 PF00076 RNA recognition motif V428_10115 PF00248 Aldo/keto reductase family V428_10120 PF01381 Helix-turn-helix V428_10125 PF13561 Enoyl-(Acyl carrier protein) reductase V428_10130 PF01212 Beta-eliminating lyase V428_10135 PF08448 PAS fold V428_10140 PF00072 Response regulator receiver domain V428_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10145 PF03466 LysR substrate binding domain V428_10150 PF11201 V428_10150 V428_10160 PF00563 EAL domain V428_10160 PF00990 GGDEF domain V428_10165 PF00881 Nitroreductase family V428_10175 PF06185 YecM protein V428_10180 PF07690 Major Facilitator Superfamily V428_10185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10185 PF03466 LysR substrate binding domain V428_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10190 PF03466 LysR substrate binding domain V428_10195 PF00925 GTP cyclohydrolase II V428_10200 PF02224 Cytidylate kinase V428_10205 PF00575 S1 RNA binding domain V428_10210 PF00216 Bacterial DNA-binding protein V428_10215 PF06305 V428_10215 V428_10220 PF13176 Tetratricopeptide repeat V428_10225 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V428_10230 PF01694 Rhomboid family V428_10235 PF03942 V428_10235 V428_10240 PF06508 Queuosine biosynthesis protein QueC V428_10245 PF04055 Radical SAM superfamily V428_10245 PF13394 4Fe-4S single cluster domain V428_10250 PF12843 V428_10250 V428_10255 PF01923 Cobalamin adenosyltransferase V428_10260 PF00816 H-NS histone family V428_10265 PF03553 V428_10265 V428_10270 PF00265 Thymidine kinase V428_10275 PF08014 V428_10275 V428_10280 PF10722 Putative bacterial sensory transduction regulator V428_10300 PF05954 Phage late control gene D protein (GPD) V428_10335 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain V428_10335 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain V428_10340 PF00313 'Cold-shock' DNA-binding domain V428_10345 PF02617 ATP-dependent Clp protease adaptor protein ClpS V428_10350 PF00004 ATPase family associated with various cellular activities (AAA) V428_10350 PF02861 Clp amino terminal domain V428_10350 PF07724 AAA domain (Cdc48 subfamily) V428_10350 PF10431 C-terminal, D2-small domain, of ClpB protein V428_10355 PF01176 Translation initiation factor 1A / IF-1 V428_10360 PF04376 V428_10360 V428_10360 PF04377 V428_10360 V428_10365 PF03588 Leucyl/phenylalanyl-tRNA protein transferase V428_10370 PF05433 V428_10370 V428_10375 PF00072 Response regulator receiver domain V428_10375 PF00990 GGDEF domain V428_10380 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_10385 PF01037 AsnC family V428_10385 PF13412 Winged helix-turn-helix DNA-binding V428_10390 PF01580 FtsK/SpoIIIE family V428_10390 PF09397 Ftsk gamma domain V428_10390 PF13491 V428_10390 V428_10395 PF03548 Outer membrane lipoprotein carrier protein LolA V428_10400 PF00004 ATPase family associated with various cellular activities (AAA) V428_10400 PF12002 MgsA AAA+ ATPase C terminal V428_10400 PF16193 V428_10400 V428_10410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_10410 PF02403 Seryl-tRNA synthetase N-terminal domain V428_10415 PF02674 V428_10415 V428_10420 PF00156 Phosphoribosyl transferase domain V428_10420 PF13522 Glutamine amidotransferase domain V428_10425 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) V428_10430 PF00005 ABC transporter V428_10435 PF00005 ABC transporter V428_10435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_10445 PF00528 Binding-protein-dependent transport system inner membrane component V428_10445 PF12911 V428_10445 V428_10450 PF00528 Binding-protein-dependent transport system inner membrane component V428_10455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_10460 PF00158 Sigma-54 interaction domain V428_10465 PF04012 V428_10465 V428_10470 PF06667 V428_10470 V428_10475 PF04024 V428_10475 V428_10480 PF04317 V428_10480 V428_10485 PF05128 V428_10485 V428_10490 PF00351 Biopterin-dependent aromatic amino acid hydroxylase V428_10495 PF01329 Pterin 4 alpha carbinolamine dehydratase V428_10500 PF01329 Pterin 4 alpha carbinolamine dehydratase V428_10505 PF00158 Sigma-54 interaction domain V428_10510 PF13689 V428_10510 V428_10515 PF00990 GGDEF domain V428_10515 PF17152 V428_10515 V428_10520 PF00691 OmpA family V428_10525 PF03741 V428_10525 V428_10530 PF01513 ATP-NAD kinase V428_10535 PF08891 V428_10535 V428_10540 PF00501 AMP-binding enzyme V428_10545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V428_10545 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region V428_10550 PF04172 V428_10550 V428_10555 PF03788 V428_10555 V428_10560 PF02065 Melibiase V428_10570 PF00929 Exonuclease V428_10570 PF08411 Exonuclease C-terminal V428_10575 PF02610 L-arabinose isomerase V428_10575 PF11762 L-arabinose isomerase C-terminal domain V428_10580 PF00596 Class II Aldolase and Adducin N-terminal domain V428_10585 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_10590 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_10595 PF00005 ABC transporter V428_10600 PF02653 V428_10600 V428_10605 PF02311 AraC-like ligand binding domain V428_10605 PF12833 Helix-turn-helix domain V428_10610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10610 PF03466 LysR substrate binding domain V428_10615 PF02678 Pirin V428_10615 PF05726 Pirin C-terminal cupin domain V428_10620 PF00444 Ribosomal protein L36 V428_10625 PF01197 Ribosomal protein L31 V428_10630 PF06183 DinI-like family V428_10635 PF11150 V428_10635 V428_10640 PF01863 Protein of unknown function DUF45 V428_10650 PF00149 Calcineurin-like phosphoesterase V428_10650 PF02872 5'-nucleotidase, C-terminal domain V428_10655 PF03606 V428_10655 V428_10660 PF06037 V428_10660 V428_10665 PF01266 FAD dependent oxidoreductase V428_10665 PF05430 S-adenosyl-L-methionine-dependent methyltransferase V428_10670 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_10670 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_10675 PF00583 Acetyltransferase (GNAT) family V428_10680 PF14302 V428_10680 V428_10685 PF00285 Citrate synthase V428_10695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V428_10700 PF00890 FAD binding domain V428_10700 PF02910 Fumarate reductase flavoprotein C-term V428_10705 PF13085 2Fe-2S iron-sulfur cluster binding domain V428_10705 PF13534 4Fe-4S dicluster domain V428_10710 PF00676 Dehydrogenase E1 component V428_10710 PF02779 Transketolase, pyrimidine binding domain V428_10710 PF16078 V428_10710 V428_10710 PF16870 V428_10710 V428_10715 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_10715 PF00364 Biotin-requiring enzyme V428_10715 PF02817 e3 binding domain V428_10720 PF00549 CoA-ligase V428_10720 PF08442 ATP-grasp domain V428_10725 PF00549 CoA-ligase V428_10725 PF02629 CoA binding domain V428_10735 PF03692 V428_10735 V428_10740 PF01266 FAD dependent oxidoreductase V428_10745 PF00528 Binding-protein-dependent transport system inner membrane component V428_10750 PF00005 ABC transporter V428_10750 PF08402 TOBE domain V428_10755 PF13343 Bacterial extracellular solute-binding protein V428_10760 PF00392 Bacterial regulatory proteins, gntR family V428_10760 PF07702 UTRA domain V428_10765 PF00266 Aminotransferase class-V V428_10770 PF00202 Aminotransferase class-III V428_10780 PF01228 Glycine radical V428_10780 PF02901 Pyruvate formate lyase V428_10785 PF01226 Formate/nitrite transporter V428_10790 PF02624 YcaO-like family V428_10795 PF00893 Small Multidrug Resistance protein V428_10800 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_10800 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_10805 PF00675 Insulinase (Peptidase family M16) V428_10805 PF05193 Peptidase M16 inactive domain V428_10810 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_10815 PF03171 2OG-Fe(II) oxygenase superfamily V428_10815 PF14226 non-haem dioxygenase in morphine synthesis N-terminal V428_10820 PF13460 NADH(P)-binding V428_10825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10825 PF03466 LysR substrate binding domain V428_10830 PF13561 Enoyl-(Acyl carrier protein) reductase V428_10835 PF06445 GyrI-like small molecule binding domain V428_10835 PF12833 Helix-turn-helix domain V428_10840 PF00593 TonB dependent receptor V428_10840 PF07715 TonB-dependent Receptor Plug Domain V428_10845 PF11575 V428_10845 V428_10850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_10850 PF03466 LysR substrate binding domain V428_10855 PF01717 Cobalamin-independent synthase, Catalytic domain V428_10855 PF08267 Cobalamin-independent synthase, N-terminal domain V428_10860 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_10865 PF00571 CBS domain V428_10865 PF04982 V428_10865 V428_10870 PF07969 Amidohydrolase family V428_10875 PF00440 Bacterial regulatory proteins, tetR family V428_10880 PF01266 FAD dependent oxidoreductase V428_10885 PF04244 Deoxyribodipyrimidine photo-lyase-related protein V428_10890 PF01212 Beta-eliminating lyase V428_10895 PF00768 D-alanyl-D-alanine carboxypeptidase V428_10900 PF00293 NUDIX domain V428_10910 PF00578 AhpC/TSA family V428_10915 PF01578 V428_10915 V428_10915 PF16327 V428_10915 V428_10920 PF03916 V428_10920 V428_10925 PF13247 4Fe-4S dicluster domain V428_10930 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V428_10930 PF13435 Cytochrome c554 and c-prime V428_10935 PF02335 Cytochrome c552 V428_10950 PF02754 V428_10950 V428_10950 PF13183 4Fe-4S dicluster domain V428_10955 PF00890 FAD binding domain V428_10960 PF01266 FAD dependent oxidoreductase V428_10960 PF04324 BFD-like [2Fe-2S] binding domain V428_10965 PF02810 SEC-C motif V428_10970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_10970 PF00672 HAMP domain V428_10970 PF17200 V428_10970 V428_10975 PF00480 ROK family V428_10980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_10980 PF17203 V428_10980 V428_10985 PF00072 Response regulator receiver domain V428_10985 PF12431 V428_10985 V428_10990 PF01970 V428_10990 V428_10995 PF07331 V428_10995 V428_11000 PF03401 Tripartite tricarboxylate transporter family receptor V428_11005 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_11005 PF01464 Transglycosylase SLT domain V428_11010 PF02080 TrkA-C domain V428_11010 PF06826 V428_11010 V428_11020 PF00271 Helicase conserved C-terminal domain V428_11020 PF02151 UvrB/uvrC motif V428_11020 PF04851 Type III restriction enzyme, res subunit V428_11020 PF12344 Ultra-violet resistance protein B V428_11025 PF06803 V428_11025 V428_11030 PF09335 V428_11030 V428_11035 PF02600 Disulfide bond formation protein DsbB V428_11040 PF06450 V428_11040 V428_11045 PF00392 Bacterial regulatory proteins, gntR family V428_11045 PF07840 FadR C-terminal domain V428_11050 PF04293 V428_11050 V428_11055 PF04285 V428_11055 V428_11060 PF06798 V428_11060 V428_11060 PF08298 PrkA AAA domain V428_11065 PF00270 DEAD/DEAH box helicase V428_11065 PF00271 Helicase conserved C-terminal domain V428_11065 PF16124 V428_11065 V428_11070 PF00375 Sodium:dicarboxylate symporter family V428_11075 PF03222 Tryptophan/tyrosine permease family V428_11080 PF00293 NUDIX domain V428_11085 PF00425 chorismate binding enzyme V428_11085 PF04715 Anthranilate synthase component I, N terminal region V428_11090 PF05681 V428_11090 V428_11090 PF05683 Fumarase C-terminus V428_11100 PF14056 V428_11100 V428_11110 PF00343 Carbohydrate phosphorylase V428_11115 PF00939 Sodium:sulfate symporter transmembrane region V428_11120 PF00085 Thioredoxin V428_11125 PF00072 Response regulator receiver domain V428_11125 PF00512 His Kinase A (phospho-acceptor) domain V428_11125 PF01627 Hpt domain V428_11125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_11130 PF00005 ABC transporter V428_11130 PF00664 ABC transporter transmembrane region V428_11140 PF00005 ABC transporter V428_11140 PF00664 ABC transporter transmembrane region V428_11145 PF14539 Domain of unknown function (DUF4442) V428_11155 PF13275 S4 domain V428_11160 PF01575 MaoC like domain V428_11165 PF07167 V428_11165 V428_11170 PF09361 V428_11170 V428_11185 PF04250 V428_11185 V428_11195 PF08543 Phosphomethylpyrimidine kinase V428_11200 PF03992 Antibiotic biosynthesis monooxygenase V428_11205 PF00465 Iron-containing alcohol dehydrogenase V428_11210 PF00583 Acetyltransferase (GNAT) family V428_11215 PF00293 NUDIX domain V428_11220 PF01928 CYTH domain V428_11230 PF02694 V428_11230 V428_11235 PF00583 Acetyltransferase (GNAT) family V428_11240 PF13673 Acetyltransferase (GNAT) domain V428_11245 PF00270 DEAD/DEAH box helicase V428_11245 PF00271 Helicase conserved C-terminal domain V428_11250 PF00255 Glutathione peroxidase V428_11255 PF13640 2OG-Fe(II) oxygenase superfamily V428_11260 PF01820 D-ala D-ala ligase N-terminus V428_11260 PF07478 D-ala D-ala ligase C-terminus V428_11270 PF03942 V428_11270 V428_11280 PF01925 V428_11280 V428_11285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_11285 PF03466 LysR substrate binding domain V428_11290 PF00892 EamA-like transporter family V428_11295 PF12833 Helix-turn-helix domain V428_11300 PF11398 Protein of unknown function (DUF2813) V428_11310 PF00128 Alpha amylase, catalytic domain V428_11310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_11350 PF00883 Cytosol aminopeptidase family, catalytic domain V428_11355 PF13419 Haloacid dehalogenase-like hydrolase V428_11360 PF01546 Peptidase family M20/M25/M40 V428_11360 PF07687 Peptidase dimerisation domain V428_11365 PF00365 Phosphofructokinase V428_11370 PF00121 Triosephosphate isomerase V428_11375 PF02698 DUF218 domain V428_11380 PF13649 Methyltransferase domain V428_11385 PF03882 KicB killing factor V428_11385 PF17192 V428_11385 V428_11385 PF17193 V428_11385 V428_11390 PF04288 MukE-like family V428_11395 PF04310 MukB N-terminal V428_11395 PF13558 Putative exonuclease SbcCD, C subunit V428_11395 PF16330 V428_11395 V428_11400 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel V428_11405 PF03992 Antibiotic biosynthesis monooxygenase V428_11410 PF00583 Acetyltransferase (GNAT) family V428_11415 PF01327 Polypeptide deformylase V428_11430 PF02567 Phenazine biosynthesis-like protein V428_11435 PF07819 PGAP1-like protein V428_11440 PF09983 V428_11440 V428_11450 PF03831 PhnA protein V428_11460 PF13679 V428_11460 V428_11465 PF00182 Chitinase class I V428_11465 PF02839 Carbohydrate binding domain V428_11470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_11475 PF04828 Glutathione-dependent formaldehyde-activating enzyme V428_11480 PF00300 Histidine phosphatase superfamily (branch 1) V428_11485 PF00990 GGDEF domain V428_11485 PF08448 PAS fold V428_11485 PF13426 PAS domain V428_11490 PF08327 Activator of Hsp90 ATPase homolog 1-like protein V428_11495 PF01713 Smr domain V428_11500 PF05175 Methyltransferase small domain V428_11505 PF01264 Chorismate synthase V428_11510 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_11515 PF00270 DEAD/DEAH box helicase V428_11515 PF00271 Helicase conserved C-terminal domain V428_11520 PF08808 V428_11520 V428_11525 PF09722 V428_11525 V428_11530 PF03222 Tryptophan/tyrosine permease family V428_11535 PF00356 Bacterial regulatory proteins, lacI family V428_11535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_11540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_11540 PF00381 PTS HPr component phosphorylation site V428_11545 PF00294 pfkB family carbohydrate kinase V428_11550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_11550 PF02378 Phosphotransferase system, EIIC V428_11555 PF06560 Glucose-6-phosphate isomerase (GPI) V428_11560 PF00356 Bacterial regulatory proteins, lacI family V428_11560 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_11570 PF03610 PTS system fructose IIA component V428_11575 PF03830 PTS system sorbose subfamily IIB component V428_11580 PF03609 V428_11580 V428_11585 PF03613 V428_11585 V428_11590 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) V428_11595 PF06945 V428_11595 V428_11600 PF03562 MltA specific insert domain V428_11600 PF06725 3D domain V428_11605 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_11610 PF00268 Ribonucleotide reductase, small chain V428_11615 PF00317 Ribonucleotide reductase, all-alpha domain V428_11615 PF02867 Ribonucleotide reductase, barrel domain V428_11615 PF03477 ATP cone domain V428_11620 PF13419 Haloacid dehalogenase-like hydrolase V428_11625 PF13489 Methyltransferase domain V428_11630 PF00521 DNA gyrase/topoisomerase IV, subunit A V428_11630 PF03989 DNA gyrase C-terminal domain, beta-propeller V428_11640 PF04055 Radical SAM superfamily V428_11645 PF08238 Sel1 repeat V428_11650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_11650 PF02824 TGS domain V428_11650 PF03129 Anticodon binding domain V428_11650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V428_11655 PF00707 Translation initiation factor IF-3, C-terminal domain V428_11655 PF05198 Translation initiation factor IF-3, N-terminal domain V428_11660 PF01632 Ribosomal protein L35 V428_11665 PF00453 Ribosomal protein L20 V428_11670 PF01409 tRNA synthetases class II core domain (F) V428_11670 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain V428_11675 PF01588 Putative tRNA binding domain V428_11675 PF03147 Ferredoxin-fold anticodon binding domain V428_11675 PF03483 B3/4 domain V428_11675 PF03484 tRNA synthetase B5 domain V428_11680 PF00216 Bacterial DNA-binding protein V428_11685 PF00072 Response regulator receiver domain V428_11685 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_11685 PF00512 His Kinase A (phospho-acceptor) domain V428_11685 PF01627 Hpt domain V428_11685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_11690 PF00072 Response regulator receiver domain V428_11695 PF00583 Acetyltransferase (GNAT) family V428_11700 PF02146 Sir2 family V428_11715 PF00356 Bacterial regulatory proteins, lacI family V428_11715 PF13377 Periplasmic binding protein-like domain V428_11720 PF00294 pfkB family carbohydrate kinase V428_11725 PF13407 Periplasmic binding protein domain V428_11730 PF02653 V428_11730 V428_11735 PF00005 ABC transporter V428_11740 PF05025 RbsD / FucU transport protein family V428_11745 PF02798 Glutathione S-transferase, N-terminal domain V428_11745 PF13410 Glutathione S-transferase, C-terminal domain V428_11755 PF11205 V428_11755 V428_11760 PF01171 PP-loop family V428_11765 PF00582 Universal stress protein family V428_11770 PF00027 Cyclic nucleotide-binding domain V428_11770 PF13545 Crp-like helix-turn-helix domain V428_11775 PF13386 V428_11775 V428_11780 PF03597 V428_11780 V428_11785 PF00122 E1-E2 ATPase V428_11785 PF00403 Heavy-metal-associated domain V428_11785 PF00702 haloacid dehalogenase-like hydrolase V428_11785 PF12156 V428_11785 V428_11790 PF05751 V428_11790 V428_11795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_11795 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP V428_11800 PF05545 V428_11800 V428_11805 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO V428_11810 PF00115 Cytochrome C and Quinol oxidase polypeptide I V428_11820 PF13185 GAF domain V428_11825 PF04352 ProQ/FINO family V428_11825 PF17516 V428_11825 V428_11830 PF00595 PDZ domain (Also known as DHR or GLGF) V428_11830 PF03572 Peptidase family S41 V428_11830 PF11818 V428_11830 V428_11835 PF01433 Peptidase family M1 V428_11835 PF11940 Domain of unknown function (DUF3458) V428_11835 PF17432 V428_11835 V428_11840 PF11197 V428_11840 V428_11845 PF05088 V428_11845 V428_11850 PF01180 Dihydroorotate dehydrogenase V428_11855 PF07126 V428_11855 V428_11860 PF01170 Putative RNA methylase family UPF0020 V428_11860 PF02926 THUMP domain V428_11860 PF10672 S-adenosylmethionine-dependent methyltransferase V428_11865 PF05768 Glutaredoxin-like domain (DUF836) V428_11870 PF00005 ABC transporter V428_11870 PF12848 ABC transporter V428_11870 PF16326 V428_11870 V428_11875 PF11949 V428_11875 V428_11880 PF04957 Ribosome modulation factor V428_11885 PF07977 FabA-like domain V428_11890 PF05362 Lon protease (S16) C-terminal proteolytic domain V428_11890 PF13654 AAA domain V428_11895 PF00589 Phage integrase family V428_11900 PF07130 YebG protein V428_11905 PF07819 PGAP1-like protein V428_11910 PF00106 short chain dehydrogenase V428_11910 PF07993 Male sterility protein V428_11915 PF05597 V428_11915 V428_11920 PF01734 Patatin-like phospholipase V428_11925 PF00440 Bacterial regulatory proteins, tetR family V428_11925 PF13972 Bacterial transcriptional repressor V428_11935 PF03007 V428_11935 V428_11935 PF06974 V428_11935 V428_11940 PF09650 V428_11940 V428_11950 PF03972 MmgE/PrpD family V428_11955 PF00285 Citrate synthase V428_11960 PF13714 Phosphoenolpyruvate phosphomutase V428_11965 PF04403 V428_11965 V428_11970 PF04403 V428_11970 V428_11975 PF02470 V428_11975 V428_11980 PF01189 NOL1/NOP2/sun family V428_11980 PF13636 pre-rRNA processing and ribosome biogenesis V428_11980 PF17125 V428_11980 V428_11990 PF00589 Phage integrase family V428_11995 PF01026 TatD related DNase V428_12000 PF09115 DNA polymerase III, delta subunit, C terminal V428_12000 PF13177 DNA polymerase III, delta subunit V428_12005 PF02223 Thymidylate kinase V428_12010 PF02618 YceG-like family V428_12015 PF01063 Aminotransferase class IV V428_12020 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_12020 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_12025 PF00550 Phosphopantetheine attachment site V428_12030 PF13561 Enoyl-(Acyl carrier protein) reductase V428_12035 PF00698 Acyl transferase domain V428_12040 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V428_12040 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V428_12045 PF02504 Fatty acid synthesis protein V428_12050 PF01783 Ribosomal L32p protein family V428_12055 PF02620 V428_12055 V428_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12065 PF03466 LysR substrate binding domain V428_12070 PF07690 Major Facilitator Superfamily V428_12075 PF02545 Maf-like protein V428_12085 PF00849 RNA pseudouridylate synthase V428_12085 PF01479 S4 domain V428_12090 PF00575 S1 RNA binding domain V428_12090 PF10150 Ribonuclease E/G family V428_12095 PF01384 V428_12095 V428_12100 PF00692 dUTPase V428_12105 PF00485 Phosphoribulokinase / Uridine kinase family V428_12110 PF01883 Domain of unknown function DUF59 V428_12110 PF10609 ParA/MinD ATPase like V428_12115 PF01588 Putative tRNA binding domain V428_12115 PF08264 Anticodon-binding domain of tRNA V428_12115 PF09334 tRNA synthetases class I (M) V428_12120 PF00043 Glutathione S-transferase, C-terminal domain V428_12120 PF02798 Glutathione S-transferase, N-terminal domain V428_12125 PF00708 Acylphosphatase V428_12130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_12135 PF10672 S-adenosylmethionine-dependent methyltransferase V428_12140 PF13410 Glutathione S-transferase, C-terminal domain V428_12140 PF13417 Glutathione S-transferase, N-terminal domain V428_12145 PF01757 V428_12145 V428_12160 PF00586 AIR synthase related protein, N-terminal domain V428_12160 PF02769 AIR synthase related protein, C-terminal domain V428_12170 PF00753 Metallo-beta-lactamase superfamily V428_12175 PF00072 Response regulator receiver domain V428_12175 PF01966 HD domain V428_12180 PF00072 Response regulator receiver domain V428_12180 PF00512 His Kinase A (phospho-acceptor) domain V428_12180 PF01627 Hpt domain V428_12180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_12195 PF00270 DEAD/DEAH box helicase V428_12195 PF00271 Helicase conserved C-terminal domain V428_12195 PF04408 Helicase associated domain (HA2) V428_12195 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold V428_12195 PF11898 V428_12195 V428_12205 PF00571 CBS domain V428_12210 PF00196 Bacterial regulatory proteins, luxR family V428_12220 PF13231 V428_12220 V428_12225 PF02575 YbaB/EbfC DNA-binding family V428_12230 PF12169 DNA polymerase III subunits gamma and tau domain III V428_12230 PF12170 DNA polymerase III tau subunit V interacting with alpha V428_12230 PF13177 DNA polymerase III, delta subunit V428_12235 PF00156 Phosphoribosyl transferase domain V428_12240 PF04304 V428_12240 V428_12245 PF01207 Dihydrouridine synthase (Dus) V428_12255 PF00239 Resolvase, N terminal domain V428_12255 PF07508 Recombinase V428_12255 PF13408 Recombinase zinc beta ribbon domain V428_12265 PF00239 Resolvase, N terminal domain V428_12265 PF07508 Recombinase V428_12350 PF11091 V428_12350 V428_12375 PF11692 V428_12375 V428_12380 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_12385 PF00570 HRDC domain V428_12385 PF01612 3'-5' exonuclease V428_12390 PF00501 AMP-binding enzyme V428_12390 PF13193 AMP-binding enzyme C-terminal domain V428_12395 PF00561 alpha/beta hydrolase fold V428_12400 PF03843 V428_12400 V428_12405 PF00814 Glycoprotease family V428_12410 PF13307 Helicase C-terminal domain V428_12420 PF01634 ATP phosphoribosyltransferase V428_12420 PF08029 HisG, C-terminal domain V428_12425 PF00815 Histidinol dehydrogenase V428_12430 PF00155 Aminotransferase class I and II V428_12435 PF00475 Imidazoleglycerol-phosphate dehydratase V428_12435 PF13242 HAD-hyrolase-like V428_12440 PF00117 Glutamine amidotransferase class-I V428_12445 PF00977 Histidine biosynthesis protein V428_12450 PF00072 Response regulator receiver domain V428_12450 PF13487 HD domain V428_12455 PF08448 PAS fold V428_12455 PF13188 PAS domain V428_12460 PF00072 Response regulator receiver domain V428_12460 PF00512 His Kinase A (phospho-acceptor) domain V428_12460 PF01627 Hpt domain V428_12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_12460 PF08447 PAS fold V428_12460 PF13426 PAS domain V428_12460 PF13493 Domain of unknown function (DUF4118) V428_12465 PF00977 Histidine biosynthesis protein V428_12470 PF01502 Phosphoribosyl-AMP cyclohydrolase V428_12470 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase V428_12475 PF00501 AMP-binding enzyme V428_12475 PF13193 AMP-binding enzyme C-terminal domain V428_12480 PF03606 V428_12480 V428_12490 PF05433 V428_12490 V428_12495 PF00932 Lamin Tail Domain V428_12495 PF03160 Calx-beta domain V428_12500 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_12500 PF01799 [2Fe-2S] binding domain V428_12505 PF00941 FAD binding domain in molybdopterin dehydrogenase V428_12505 PF03450 CO dehydrogenase flavoprotein C-terminal domain V428_12510 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain V428_12510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase V428_12515 PF00860 Permease family V428_12520 PF01979 Amidohydrolase family V428_12525 PF00860 Permease family V428_12530 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain V428_12530 PF01799 [2Fe-2S] binding domain V428_12530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase V428_12535 PF00941 FAD binding domain in molybdopterin dehydrogenase V428_12540 PF01979 Amidohydrolase family V428_12545 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_12545 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_12555 PF12804 MobA-like NTP transferase domain V428_12570 PF02625 XdhC and CoxI family V428_12570 PF13478 XdhC Rossmann domain V428_12575 PF00892 EamA-like transporter family V428_12585 PF00696 Amino acid kinase family V428_12590 PF01979 Amidohydrolase family V428_12595 PF01546 Peptidase family M20/M25/M40 V428_12595 PF07687 Peptidase dimerisation domain V428_12600 PF00291 Pyridoxal-phosphate dependent enzyme V428_12605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_12605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_12610 PF00158 Sigma-54 interaction domain V428_12610 PF02954 Bacterial regulatory protein, Fis family V428_12615 PF10123 V428_12615 V428_12620 PF05069 V428_12620 V428_12630 PF06074 V428_12630 V428_12635 PF03547 V428_12635 V428_12640 PF07152 YaeQ protein V428_12650 PF00378 Enoyl-CoA hydratase/isomerase family V428_12650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V428_12650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V428_12655 PF00108 Thiolase, N-terminal domain V428_12655 PF02803 Thiolase, C-terminal domain V428_12660 PF07726 ATPase family associated with various cellular activities (AAA) V428_12665 PF01882 V428_12665 V428_12670 PF14316 V428_12670 V428_12675 PF00092 von Willebrand factor type A domain V428_12680 PF00515 Tetratricopeptide repeat V428_12680 PF13519 von Willebrand factor type A domain V428_12685 PF13584 V428_12685 V428_12690 PF04542 Sigma-70 region 2 V428_12690 PF08281 Sigma-70, region 4 V428_12695 PF11859 V428_12695 V428_12700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V428_12710 PF00563 EAL domain V428_12710 PF08668 HDOD domain V428_12715 PF00108 Thiolase, N-terminal domain V428_12715 PF02803 Thiolase, C-terminal domain V428_12720 PF13411 MerR HTH family regulatory protein V428_12725 PF00375 Sodium:dicarboxylate symporter family V428_12730 PF06865 Protein of unknown function (DUF1255) V428_12735 PF03313 V428_12735 V428_12735 PF03315 Serine dehydratase beta chain V428_12740 PF03313 V428_12740 V428_12740 PF03315 Serine dehydratase beta chain V428_12745 PF13406 Transglycosylase SLT domain V428_12750 PF05166 YcgL domain V428_12755 PF03775 Septum formation inhibitor MinC, C-terminal domain V428_12755 PF05209 Septum formation inhibitor MinC, N-terminal domain V428_12760 PF13614 AAA domain V428_12765 PF03776 Septum formation topological specificity factor MinE V428_12770 PF04269 Protein of unknown function, DUF440 V428_12775 PF00912 Transglycosylase V428_12780 PF04269 Protein of unknown function, DUF440 V428_12785 PF06945 V428_12785 V428_12785 PF14375 V428_12785 V428_12790 PF13509 S1 domain V428_12795 PF03695 Uncharacterised protein family (UPF0149) V428_12800 PF12802 MarR family V428_12805 PF14056 V428_12805 V428_12815 PF02525 Flavodoxin-like fold V428_12820 PF00892 EamA-like transporter family V428_12825 PF01370 NAD dependent epimerase/dehydratase family V428_12825 PF02222 ATP-grasp domain V428_12830 PF13419 Haloacid dehalogenase-like hydrolase V428_12835 PF14255 V428_12835 V428_12840 PF00677 Lumazine binding domain V428_12845 PF06786 V428_12845 V428_12850 PF01554 MatE V428_12870 PF00136 DNA polymerase family B V428_12870 PF03104 DNA polymerase family B, exonuclease domain V428_12875 PF04073 Aminoacyl-tRNA editing domain V428_12880 PF00990 GGDEF domain V428_12885 PF00583 Acetyltransferase (GNAT) family V428_12890 PF01163 RIO1 family V428_12895 PF03279 V428_12895 V428_12900 PF03279 V428_12900 V428_12905 PF03595 Voltage-dependent anion channel V428_12910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12910 PF03466 LysR substrate binding domain V428_12915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_12920 PF01261 Xylose isomerase-like TIM barrel V428_12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12925 PF03466 LysR substrate binding domain V428_12930 PF13561 Enoyl-(Acyl carrier protein) reductase V428_12935 PF01966 HD domain V428_12945 PF00174 Oxidoreductase molybdopterin binding domain V428_12950 PF00563 EAL domain V428_12950 PF00990 GGDEF domain V428_12955 PF00232 Glycosyl hydrolase family 1 V428_12960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12960 PF03466 LysR substrate binding domain V428_12965 PF00990 GGDEF domain V428_12965 PF02743 Cache domain V428_12970 PF00248 Aldo/keto reductase family V428_12980 PF00248 Aldo/keto reductase family V428_12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_12985 PF03466 LysR substrate binding domain V428_12990 PF13460 NADH(P)-binding V428_12995 PF01738 Dienelactone hydrolase family V428_13000 PF01738 Dienelactone hydrolase family V428_13005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_13005 PF03466 LysR substrate binding domain V428_13015 PF00239 Resolvase, N terminal domain V428_13015 PF09339 IclR helix-turn-helix domain V428_13030 PF10980 Protein of unknown function (DUF2787) V428_13035 PF04002 RadC-like JAB domain V428_13060 PF00072 Response regulator receiver domain V428_13060 PF00563 EAL domain V428_13080 PF00589 Phage integrase family V428_13085 PF01925 V428_13085 V428_13090 PF13520 Amino acid permease V428_13095 PF13561 Enoyl-(Acyl carrier protein) reductase V428_13100 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V428_13100 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase V428_13105 PF16113 V428_13105 V428_13110 PF00378 Enoyl-CoA hydratase/isomerase family V428_13115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_13115 PF02770 Acyl-CoA dehydrogenase, middle domain V428_13115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_13120 PF00171 Aldehyde dehydrogenase family V428_13125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_13125 PF02770 Acyl-CoA dehydrogenase, middle domain V428_13125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_13130 PF01039 Carboxyl transferase domain V428_13135 PF00378 Enoyl-CoA hydratase/isomerase family V428_13140 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain V428_13140 PF00364 Biotin-requiring enzyme V428_13140 PF02785 Biotin carboxylase C-terminal domain V428_13140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_13145 PF00682 HMGL-like V428_13150 PF13411 MerR HTH family regulatory protein V428_13155 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_13170 PF01184 V428_13170 V428_13175 PF06167 Glucose-regulated metallo-peptidase M90 V428_13180 PF00583 Acetyltransferase (GNAT) family V428_13185 PF01235 V428_13185 V428_13230 PF00378 Enoyl-CoA hydratase/isomerase family V428_13235 PF00027 Cyclic nucleotide-binding domain V428_13235 PF03445 V428_13235 V428_13235 PF10335 V428_13235 V428_13240 PF00929 Exonuclease V428_13245 PF04341 V428_13245 V428_13250 PF00474 Sodium:solute symporter family V428_13255 PF00005 ABC transporter V428_13255 PF12848 ABC transporter V428_13260 PF13616 PPIC-type PPIASE domain V428_13260 PF13624 SurA N-terminal domain V428_13265 PF00216 Bacterial DNA-binding protein V428_13270 PF00004 ATPase family associated with various cellular activities (AAA) V428_13270 PF02190 ATP-dependent protease La (LON) domain V428_13270 PF05362 Lon protease (S16) C-terminal proteolytic domain V428_13275 PF06689 ClpX C4-type zinc finger V428_13275 PF07724 AAA domain (Cdc48 subfamily) V428_13275 PF10431 C-terminal, D2-small domain, of ClpB protein V428_13280 PF00574 Clp protease V428_13285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_13285 PF05697 Bacterial trigger factor protein (TF) V428_13285 PF05698 Bacterial trigger factor protein (TF) C-terminus V428_13290 PF03733 V428_13290 V428_13295 PF13023 HD domain V428_13300 PF02687 V428_13300 V428_13300 PF12704 MacB-like periplasmic core domain V428_13305 PF00005 ABC transporter V428_13310 PF02687 V428_13310 V428_13310 PF12704 MacB-like periplasmic core domain V428_13320 PF00270 DEAD/DEAH box helicase V428_13320 PF00271 Helicase conserved C-terminal domain V428_13320 PF02559 CarD-like/TRCF domain V428_13320 PF03461 TRCF domain V428_13325 PF00316 Fructose-1-6-bisphosphatase V428_13330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_13335 PF00892 EamA-like transporter family V428_13340 PF06526 Protein of unknown function (DUF1107) V428_13345 PF00300 Histidine phosphatase superfamily (branch 1) V428_13350 PF00675 Insulinase (Peptidase family M16) V428_13350 PF05193 Peptidase M16 inactive domain V428_13350 PF16187 V428_13350 V428_13355 PF05724 Thiopurine S-methyltransferase (TPMT) V428_13360 PF07714 Protein tyrosine kinase V428_13365 PF13561 Enoyl-(Acyl carrier protein) reductase V428_13370 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_13370 PF12833 Helix-turn-helix domain V428_13380 PF13175 AAA ATPase domain V428_13425 PF13481 AAA domain V428_13430 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_13445 PF00589 Phage integrase family V428_13445 PF13356 Domain of unknown function (DUF4102) V428_13450 PF00117 Glutamine amidotransferase class-I V428_13450 PF00958 GMP synthase C terminal domain V428_13450 PF02540 NAD synthase V428_13455 PF00478 IMP dehydrogenase / GMP reductase domain V428_13455 PF00571 CBS domain V428_13460 PF02705 V428_13460 V428_13465 PF03544 Gram-negative bacterial TonB protein C-terminal V428_13470 PF01618 V428_13470 V428_13475 PF02472 Biopolymer transport protein ExbD/TolR V428_13480 PF00892 EamA-like transporter family V428_13485 PF02601 V428_13485 V428_13485 PF13742 V428_13485 V428_13490 PF04055 Radical SAM superfamily V428_13495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_13495 PF00672 HAMP domain V428_13500 PF00793 DAHP synthetase I family V428_13505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V428_13510 PF00266 Aminotransferase class-V V428_13515 PF00766 Electron transfer flavoprotein FAD-binding domain V428_13515 PF01012 Electron transfer flavoprotein domain V428_13525 PF01012 Electron transfer flavoprotein domain V428_13530 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase V428_13530 PF13450 NAD(P)-binding Rossmann-like domain V428_13535 PF01544 CorA-like Mg2+ transporter protein V428_13540 PF11143 V428_13540 V428_13550 PF07690 Major Facilitator Superfamily V428_13555 PF00593 TonB dependent receptor V428_13555 PF07715 TonB-dependent Receptor Plug Domain V428_13560 PF01032 FecCD transport family V428_13565 PF01032 FecCD transport family V428_13570 PF00005 ABC transporter V428_13575 PF01648 4'-phosphopantetheinyl transferase superfamily V428_13580 PF01497 Periplasmic binding protein V428_13585 PF00501 AMP-binding enzyme V428_13585 PF13193 AMP-binding enzyme C-terminal domain V428_13590 PF00501 AMP-binding enzyme V428_13590 PF00550 Phosphopantetheine attachment site V428_13590 PF00668 Condensation domain V428_13595 PF13561 Enoyl-(Acyl carrier protein) reductase V428_13600 PF00501 AMP-binding enzyme V428_13600 PF00550 Phosphopantetheine attachment site V428_13600 PF00668 Condensation domain V428_13600 PF13193 AMP-binding enzyme C-terminal domain V428_13605 PF00550 Phosphopantetheine attachment site V428_13605 PF00857 Isochorismatase family V428_13610 PF00501 AMP-binding enzyme V428_13610 PF13193 AMP-binding enzyme C-terminal domain V428_13615 PF00425 chorismate binding enzyme V428_13620 PF07273 Protein of unknown function (DUF1439) V428_13630 PF00483 Nucleotidyl transferase V428_13645 PF11042 V428_13645 V428_13650 PF00294 pfkB family carbohydrate kinase V428_13655 PF01124 MAPEG family V428_13660 PF00762 Ferrochelatase V428_13665 PF00406 Adenylate kinase V428_13665 PF05191 Adenylate kinase, active site lid V428_13670 PF00183 Hsp90 protein V428_13670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_13675 PF02132 RecR protein V428_13675 PF13662 Toprim domain V428_13680 PF02634 FdhD/NarQ family V428_13685 PF00158 Sigma-54 interaction domain V428_13685 PF13185 GAF domain V428_13695 PF00384 Molybdopterin oxidoreductase V428_13695 PF01568 Molydopterin dinucleotide binding domain V428_13700 PF00384 Molybdopterin oxidoreductase V428_13700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_13705 PF12838 4Fe-4S dicluster domain V428_13715 PF02705 V428_13715 V428_13720 PF00037 4Fe-4S binding domain V428_13720 PF12837 4Fe-4S binding domain V428_13725 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains V428_13725 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V428_13730 PF00146 NADH dehydrogenase V428_13735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit V428_13735 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit V428_13735 PF00374 Nickel-dependent hydrogenase V428_13740 PF12838 4Fe-4S dicluster domain V428_13745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_13750 PF07450 V428_13750 V428_13755 PF01750 Hydrogenase maturation protease V428_13765 PF03841 L-seryl-tRNA selenium transferase V428_13765 PF12390 V428_13765 V428_13770 PF00009 Elongation factor Tu GTP binding domain V428_13770 PF03144 Elongation factor Tu domain 2 V428_13770 PF09107 Elongation factor SelB, winged helix V428_13775 PF00708 Acylphosphatase V428_13775 PF01300 Telomere recombination V428_13775 PF07503 HypF finger V428_13780 PF01455 HupF/HypC family V428_13785 PF01924 Hydrogenase formation hypA family V428_13790 PF00586 AIR synthase related protein, N-terminal domain V428_13790 PF02769 AIR synthase related protein, C-terminal domain V428_13795 PF01155 Hydrogenase expression/synthesis hypA family V428_13805 PF02492 CobW/HypB/UreG, nucleotide-binding domain V428_13810 PF00005 ABC transporter V428_13815 PF00005 ABC transporter V428_13820 PF00528 Binding-protein-dependent transport system inner membrane component V428_13825 PF00528 Binding-protein-dependent transport system inner membrane component V428_13830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_13835 PF11939 Protein of unknown function (DUF3457) V428_13840 PF01750 Hydrogenase maturation protease V428_13845 PF00374 Nickel-dependent hydrogenase V428_13855 PF13247 4Fe-4S dicluster domain V428_13860 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_13860 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal V428_13865 PF00072 Response regulator receiver domain V428_13870 PF13466 STAS domain V428_13875 PF01584 CheW-like domain V428_13875 PF01627 Hpt domain V428_13875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_13875 PF02895 Signal transducing histidine kinase, homodimeric domain V428_13880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_13880 PF12729 V428_13880 V428_13885 PF01584 CheW-like domain V428_13890 PF01739 CheR methyltransferase, SAM binding domain V428_13890 PF03705 CheR methyltransferase, all-alpha domain V428_13895 PF00072 Response regulator receiver domain V428_13895 PF01339 CheB methylesterase V428_13900 PF00072 Response regulator receiver domain V428_13900 PF00563 EAL domain V428_13905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_13905 PF12729 V428_13905 V428_13910 PF00842 Alanine racemase, C-terminal domain V428_13910 PF01168 Alanine racemase, N-terminal domain V428_13915 PF03483 B3/4 domain V428_13920 PF01381 Helix-turn-helix V428_13920 PF07883 Cupin domain V428_13925 PF00665 Integrase core domain V428_13930 PF01527 Transposase V428_13935 PF01527 Transposase V428_13945 PF01527 Transposase V428_13965 PF13481 AAA domain V428_13980 PF00589 Phage integrase family V428_13985 PF00589 Phage integrase family V428_13985 PF13495 Phage integrase, N-terminal SAM-like domain V428_13995 PF00916 V428_13995 V428_13995 PF01740 STAS domain V428_14010 PF03350 V428_14010 V428_14025 PF03239 V428_14025 V428_14030 PF01593 Flavin containing amine oxidoreductase V428_14045 PF07690 Major Facilitator Superfamily V428_14050 PF14267 V428_14050 V428_14055 PF00005 ABC transporter V428_14060 PF02687 V428_14060 V428_14060 PF12704 MacB-like periplasmic core domain V428_14065 PF07143 Hydroxyneurosporene synthase (CrtC) V428_14065 PF17186 V428_14065 V428_14070 PF01565 FAD binding domain V428_14070 PF02913 FAD linked oxidases, C-terminal domain V428_14070 PF13183 4Fe-4S dicluster domain V428_14075 PF02589 Uncharacterised ACR, YkgG family COG1556 V428_14080 PF02589 Uncharacterised ACR, YkgG family COG1556 V428_14080 PF11870 V428_14080 V428_14080 PF13183 4Fe-4S dicluster domain V428_14085 PF02754 V428_14085 V428_14090 PF02652 V428_14090 V428_14095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_14095 PF03466 LysR substrate binding domain V428_14100 PF13467 Ribbon-helix-helix domain V428_14105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_14110 PF00561 alpha/beta hydrolase fold V428_14115 PF04237 YjbR V428_14120 PF13673 Acetyltransferase (GNAT) domain V428_14125 PF12290 V428_14125 V428_14135 PF01625 Peptide methionine sulfoxide reductase V428_14140 PF00583 Acetyltransferase (GNAT) family V428_14140 PF00696 Amino acid kinase family V428_14145 PF00696 Amino acid kinase family V428_14155 PF00884 Sulfatase V428_14160 PF02016 LD-carboxypeptidase V428_14165 PF01734 Patatin-like phospholipase V428_14170 PF17179 V428_14170 V428_14175 PF00175 Oxidoreductase NAD-binding domain V428_14175 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B V428_14180 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_14180 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_14180 PF14697 4Fe-4S dicluster domain V428_14185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_14185 PF10414 Sirohaem synthase dimerisation region V428_14185 PF13241 Putative NAD(P)-binding V428_14185 PF14824 Sirohaem biosynthesis protein central V428_14195 PF01906 Putative heavy-metal-binding V428_14205 PF05791 Bacillus haemolytic enterotoxin (HBL) V428_14215 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_14220 PF05728 Uncharacterised protein family (UPF0227) V428_14225 PF00860 Permease family V428_14230 PF01432 Peptidase family M3 V428_14230 PF08439 Oligopeptidase F V428_14235 PF01432 Peptidase family M3 V428_14235 PF08439 Oligopeptidase F V428_14240 PF05661 V428_14240 V428_14245 PF06041 Bacterial protein of unknown function (DUF924) V428_14250 PF02355 Protein export membrane protein V428_14250 PF07549 SecD/SecF GG Motif V428_14255 PF02355 Protein export membrane protein V428_14255 PF07549 SecD/SecF GG Motif V428_14255 PF13721 SecD export protein N-terminal TM region V428_14270 PF01636 Phosphotransferase enzyme family V428_14275 PF13036 Protein of unknown function (DUF3897) V428_14280 PF07233 Protein of unknown function (DUF1425) V428_14290 PF01230 HIT domain V428_14295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_14300 PF01242 6-pyruvoyl tetrahydropterin synthase V428_14305 PF01979 Amidohydrolase family V428_14320 PF00375 Sodium:dicarboxylate symporter family V428_14325 PF04191 Phospholipid methyltransferase V428_14330 PF00842 Alanine racemase, C-terminal domain V428_14330 PF01168 Alanine racemase, N-terminal domain V428_14335 PF03741 V428_14335 V428_14340 PF00005 ABC transporter V428_14340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_14350 PF00005 ABC transporter V428_14350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_14355 PF00528 Binding-protein-dependent transport system inner membrane component V428_14355 PF12911 V428_14355 V428_14360 PF00528 Binding-protein-dependent transport system inner membrane component V428_14365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_14370 PF01914 V428_14370 V428_14375 PF10014 2OG-Fe dioxygenase V428_14380 PF00171 Aldehyde dehydrogenase family V428_14380 PF00465 Iron-containing alcohol dehydrogenase V428_14385 PF11871 V428_14385 V428_14385 PF13487 HD domain V428_14390 PF06580 V428_14390 V428_14390 PF07694 5TMR of 5TMR-LYT V428_14395 PF00072 Response regulator receiver domain V428_14395 PF04397 LytTr DNA-binding domain V428_14400 PF02554 V428_14400 V428_14400 PF13722 V428_14400 V428_14405 PF11742 V428_14405 V428_14410 PF16576 V428_14410 V428_14415 PF00271 Helicase conserved C-terminal domain V428_14415 PF04851 Type III restriction enzyme, res subunit V428_14420 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family V428_14425 PF00462 Glutaredoxin V428_14430 PF07866 Protein of unknown function (DUF1653) V428_14435 PF00155 Aminotransferase class I and II V428_14440 PF03606 V428_14440 V428_14445 PF07055 Enoyl reductase FAD binding domain V428_14445 PF12241 Trans-2-enoyl-CoA reductase catalytic region V428_14445 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V428_14450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_14450 PF08447 PAS fold V428_14450 PF13426 PAS domain V428_14460 PF00892 EamA-like transporter family V428_14465 PF02508 V428_14465 V428_14470 PF04060 Putative Fe-S cluster V428_14470 PF14697 4Fe-4S dicluster domain V428_14475 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V428_14475 PF10531 SLBB domain V428_14475 PF12838 4Fe-4S dicluster domain V428_14475 PF13375 RnfC Barrel sandwich hybrid domain V428_14480 PF03116 V428_14480 V428_14485 PF04205 FMN-binding domain V428_14490 PF02508 V428_14490 V428_14495 PF00633 Helix-hairpin-helix motif V428_14495 PF00730 HhH-GPD superfamily base excision DNA repair protein V428_14495 PF10576 Iron-sulfur binding domain of endonuclease III V428_14500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_14505 PF00691 OmpA family V428_14510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_14510 PF08376 Nitrate and nitrite sensing V428_14515 PF00929 Exonuclease V428_14520 PF03553 V428_14520 V428_14520 PF13726 V428_14520 V428_14525 PF00270 DEAD/DEAH box helicase V428_14525 PF00271 Helicase conserved C-terminal domain V428_14525 PF03880 DbpA RNA binding domain V428_14530 PF03061 Thioesterase superfamily V428_14540 PF01565 FAD binding domain V428_14540 PF02913 FAD linked oxidases, C-terminal domain V428_14540 PF13183 4Fe-4S dicluster domain V428_14545 PF01545 Cation efflux family V428_14550 PF00571 CBS domain V428_14550 PF03471 Transporter associated domain V428_14550 PF03741 V428_14550 V428_14555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_14560 PF00962 Adenosine/AMP deaminase V428_14565 PF13242 HAD-hyrolase-like V428_14565 PF13344 Haloacid dehalogenase-like hydrolase V428_14570 PF00999 Sodium/hydrogen exchanger family V428_14570 PF02254 TrkA-N domain V428_14575 PF05899 Protein of unknown function (DUF861) V428_14580 PF00733 Asparagine synthase V428_14580 PF13537 Glutamine amidotransferase domain V428_14585 PF13899 Thioredoxin-like V428_14590 PF13417 Glutathione S-transferase, N-terminal domain V428_14595 PF13417 Glutathione S-transferase, N-terminal domain V428_14595 PF14497 Glutathione S-transferase, C-terminal domain V428_14600 PF01557 Fumarylacetoacetate (FAA) hydrolase family V428_14605 PF04209 homogentisate 1,2-dioxygenase V428_14610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_14610 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal V428_14615 PF12710 haloacid dehalogenase-like hydrolase V428_14620 PF00849 RNA pseudouridylate synthase V428_14625 PF00990 GGDEF domain V428_14625 PF09084 NMT1/THI5 like V428_14630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_14630 PF08447 PAS fold V428_14635 PF06057 Bacterial virulence protein (VirJ) V428_14640 PF03706 V428_14640 V428_14640 PF09924 Uncharacterized conserved protein (DUF2156) V428_14650 PF00884 Sulfatase V428_14650 PF08019 V428_14650 V428_14655 PF03988 V428_14655 V428_14660 PF07690 Major Facilitator Superfamily V428_14670 PF01027 Inhibitor of apoptosis-promoting Bax1 V428_14675 PF12805 V428_14675 V428_14675 PF13515 V428_14675 V428_14680 PF04358 DsrC like protein V428_14685 PF05036 Sporulation related domain V428_14690 PF02875 Mur ligase family, glutamate ligase domain V428_14690 PF08245 Mur ligase middle domain V428_14695 PF01039 Carboxyl transferase domain V428_14700 PF01416 tRNA pseudouridine synthase V428_14710 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_14710 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_14715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_14715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_14715 PF11890 Domain of unknown function (DUF3410) V428_14720 PF01569 PAP2 superfamily V428_14725 PF03180 NLPA lipoprotein V428_14730 PF07969 Amidohydrolase family V428_14735 PF06445 GyrI-like small molecule binding domain V428_14735 PF12833 Helix-turn-helix domain V428_14755 PF00857 Isochorismatase family V428_14760 PF00082 Subtilase family V428_14760 PF01483 Proprotein convertase P-domain V428_14770 PF00933 Glycosyl hydrolase family 3 N terminal domain V428_14770 PF01915 Glycosyl hydrolase family 3 C-terminal domain V428_14770 PF14310 Fibronectin type III-like domain V428_14775 PF12625 V428_14775 V428_14775 PF12833 Helix-turn-helix domain V428_14780 PF00391 PEP-utilising enzyme, mobile domain V428_14780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain V428_14780 PF02896 PEP-utilising enzyme, TIM barrel domain V428_14785 PF03618 V428_14785 V428_14795 PF00324 Amino acid permease V428_14800 PF04402 Protein of unknown function (DUF541) V428_14810 PF00353 Hemolysin-type calcium-binding repeat (2 copies) V428_14835 PF00563 EAL domain V428_14835 PF00990 GGDEF domain V428_14835 PF16448 V428_14835 V428_14840 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP V428_14845 PF02321 Outer membrane efflux protein V428_14850 PF13437 HlyD family secretion protein V428_14850 PF13533 Biotin-lipoyl like V428_14855 PF00005 ABC transporter V428_14855 PF00664 ABC transporter transmembrane region V428_14860 PF04055 Radical SAM superfamily V428_14860 PF16199 V428_14860 V428_14865 PF00310 Glutamine amidotransferases class-II V428_14865 PF01493 GXGXG motif V428_14865 PF01645 Conserved region in glutamate synthase V428_14865 PF04898 Glutamate synthase central domain V428_14870 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_14870 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_14875 PF00005 ABC transporter V428_14880 PF00528 Binding-protein-dependent transport system inner membrane component V428_14885 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_14890 PF12680 SnoaL-like domain V428_14895 PF01596 O-methyltransferase V428_14900 PF00376 MerR family regulatory protein V428_14900 PF09278 MerR, DNA binding V428_14905 PF14027 V428_14905 V428_14915 PF14521 Lysine-specific metallo-endopeptidase V428_14920 PF11140 V428_14920 V428_14925 PF00270 DEAD/DEAH box helicase V428_14925 PF00271 Helicase conserved C-terminal domain V428_14930 PF13302 Acetyltransferase (GNAT) domain V428_14935 PF09335 V428_14935 V428_14940 PF05228 V428_14940 V428_14955 PF07759 V428_14955 V428_14960 PF00682 HMGL-like V428_14960 PF08502 LeuA allosteric (dimerisation) domain V428_14965 PF02142 MGS-like domain V428_14965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_14965 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain V428_14970 PF00117 Glutamine amidotransferase class-I V428_14970 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain V428_14975 PF01113 Dihydrodipicolinate reductase, N-terminus V428_14975 PF05173 Dihydrodipicolinate reductase, C-terminus V428_14980 PF03553 V428_14980 V428_14985 PF01812 5-formyltetrahydrofolate cyclo-ligase family V428_14990 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V428_15000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_15000 PF01842 ACT domain V428_15000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_15005 PF01219 Prokaryotic diacylglycerol kinase V428_15010 PF00793 DAHP synthetase I family V428_15015 PF00583 Acetyltransferase (GNAT) family V428_15020 PF00005 ABC transporter V428_15025 PF01032 FecCD transport family V428_15030 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_15035 PF04342 V428_15035 V428_15040 PF00437 Type II/IV secretion system protein V428_15045 PF00483 Nucleotidyl transferase V428_15055 PF09012 FeoC like transcriptional regulator V428_15060 PF02421 Ferrous iron transport protein B V428_15060 PF07664 V428_15060 V428_15060 PF07670 Nucleoside recognition V428_15065 PF04023 FeoA domain V428_15070 PF01253 Translation initiation factor SUI1 V428_15075 PF01169 V428_15075 V428_15080 PF09925 V428_15080 V428_15085 PF14351 V428_15085 V428_15090 PF14345 V428_15090 V428_15095 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_15100 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_15105 PF00990 GGDEF domain V428_15105 PF13492 GAF domain V428_15125 PF01406 tRNA synthetases class I (C) catalytic domain V428_15125 PF09190 DALR domain V428_15130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V428_15135 PF14091 V428_15135 V428_15140 PF00149 Calcineurin-like phosphoesterase V428_15145 PF03916 V428_15145 V428_15150 PF13247 4Fe-4S dicluster domain V428_15155 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V428_15155 PF13435 Cytochrome c554 and c-prime V428_15160 PF00034 Cytochrome c V428_15160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_15170 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V428_15175 PF11854 V428_15175 V428_15185 PF01757 V428_15185 V428_15205 PF04224 V428_15205 V428_15210 PF02627 Carboxymuconolactone decarboxylase family V428_15220 PF00665 Integrase core domain V428_15220 PF13276 V428_15220 V428_15225 PF01527 Transposase V428_15235 PF04962 KduI/IolB family V428_15240 PF01261 Xylose isomerase-like TIM barrel V428_15245 PF00294 pfkB family carbohydrate kinase V428_15245 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) V428_15250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_15250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_15255 PF02653 V428_15255 V428_15260 PF00005 ABC transporter V428_15265 PF13407 Periplasmic binding protein domain V428_15270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_15270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_15280 PF00205 Thiamine pyrophosphate enzyme, central domain V428_15280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_15280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_15285 PF01380 SIS domain V428_15285 PF01418 Helix-turn-helix domain, rpiR family V428_15290 PF00171 Aldehyde dehydrogenase family V428_15295 PF13356 Domain of unknown function (DUF4102) V428_15300 PF03050 V428_15300 V428_15300 PF13817 V428_15300 V428_15305 PF06048 V428_15305 V428_15330 PF00589 Phage integrase family V428_15330 PF13356 Domain of unknown function (DUF4102) V428_15350 PF01066 CDP-alcohol phosphatidyltransferase V428_15355 PF01541 GIY-YIG catalytic domain V428_15355 PF02151 UvrB/uvrC motif V428_15355 PF08459 UvrC Helix-hairpin-helix N-terminal V428_15355 PF14520 Helix-hairpin-helix domain V428_15360 PF00072 Response regulator receiver domain V428_15360 PF00196 Bacterial regulatory proteins, luxR family V428_15365 PF02348 Cytidylyltransferase V428_15370 PF03966 Trm112p-like protein V428_15375 PF02606 Tetraacyldisaccharide-1-P 4'-kinase V428_15380 PF00005 ABC transporter V428_15380 PF00664 ABC transporter transmembrane region V428_15400 PF11692 V428_15400 V428_15410 PF02661 Fic/DOC family V428_15410 PF13776 V428_15410 V428_15415 PF00816 H-NS histone family V428_15420 PF09722 V428_15420 V428_15510 PF13567 V428_15510 V428_15515 PF09835 V428_15515 V428_15520 PF09835 V428_15520 V428_15525 PF05872 V428_15525 V428_15530 PF00155 Aminotransferase class I and II V428_15540 PF13609 Gram-negative porin V428_15545 PF06733 DEAD_2 V428_15545 PF13307 Helicase C-terminal domain V428_15550 PF09829 V428_15550 V428_15555 PF00850 Histone deacetylase domain V428_15560 PF07690 Major Facilitator Superfamily V428_15565 PF01926 50S ribosome-binding GTPase V428_15570 PF00245 Alkaline phosphatase V428_15575 PF00245 Alkaline phosphatase V428_15585 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_15590 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_15590 PF14760 Rnk N-terminus V428_15595 PF00072 Response regulator receiver domain V428_15595 PF00196 Bacterial regulatory proteins, luxR family V428_15600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_15600 PF05231 V428_15600 V428_15600 PF07730 Histidine kinase V428_15605 PF07690 Major Facilitator Superfamily V428_15610 PF00990 GGDEF domain V428_15615 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_15620 PF00528 Binding-protein-dependent transport system inner membrane component V428_15625 PF00005 ABC transporter V428_15630 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_15635 PF04116 V428_15635 V428_15640 PF13520 Amino acid permease V428_15645 PF02574 Homocysteine S-methyltransferase V428_15655 PF01595 V428_15655 V428_15655 PF03471 Transporter associated domain V428_15660 PF01895 PhoU domain V428_15670 PF00005 ABC transporter V428_15675 PF00528 Binding-protein-dependent transport system inner membrane component V428_15680 PF00528 Binding-protein-dependent transport system inner membrane component V428_15685 PF14437 V428_15685 V428_15700 PF01274 Malate synthase V428_15705 PF00463 Isocitrate lyase family V428_15710 PF00308 Bacterial dnaA protein V428_15715 PF09839 V428_15715 V428_15720 PF14681 Uracil phosphoribosyltransferase V428_15725 PF00586 AIR synthase related protein, N-terminal domain V428_15725 PF02769 AIR synthase related protein, C-terminal domain V428_15730 PF00551 Formyl transferase V428_15735 PF01784 NIF3 (NGG1p interacting factor 3) V428_15740 PF00072 Response regulator receiver domain V428_15740 PF00158 Sigma-54 interaction domain V428_15740 PF02954 Bacterial regulatory protein, Fis family V428_15745 PF00512 His Kinase A (phospho-acceptor) domain V428_15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_15745 PF13188 PAS domain V428_15750 PF00158 Sigma-54 interaction domain V428_15750 PF02954 Bacterial regulatory protein, Fis family V428_15750 PF06490 V428_15750 V428_15755 PF01396 V428_15755 V428_15755 PF10881 V428_15755 V428_15760 PF13740 ACT domain V428_15765 PF02503 Polyphosphate kinase middle domain V428_15765 PF13089 Polyphosphate kinase N-terminal domain V428_15765 PF13090 Polyphosphate kinase C-terminal domain V428_15770 PF02541 Ppx/GppA phosphatase family V428_15775 PF00571 CBS domain V428_15775 PF01769 Divalent cation transporter V428_15780 PF00669 Bacterial flagellin N-terminal helical region V428_15785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15790 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase V428_15790 PF10135 V428_15790 V428_15795 PF02119 V428_15795 V428_15800 PF02107 V428_15800 V428_15805 PF00460 Flagella basal body rod protein V428_15805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15810 PF00460 Flagella basal body rod protein V428_15810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15815 PF00460 Flagella basal body rod protein V428_15815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15815 PF07559 Flagellar basal body protein FlaE V428_15820 PF03963 V428_15820 V428_15820 PF13860 FlgD Ig-like domain V428_15820 PF13861 FlgD Tudor-like domain V428_15825 PF00460 Flagella basal body rod protein V428_15825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_15830 PF00460 Flagella basal body rod protein V428_15835 PF01739 CheR methyltransferase, SAM binding domain V428_15835 PF03705 CheR methyltransferase, all-alpha domain V428_15840 PF00072 Response regulator receiver domain V428_15840 PF01584 CheW-like domain V428_15845 PF13144 SAF-like V428_15850 PF04316 Anti-sigma-28 factor, FlgM V428_15855 PF05130 FlgN protein V428_15860 PF12850 Calcineurin-like phosphoesterase superfamily domain V428_15865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_15870 PF00892 EamA-like transporter family V428_15875 PF00849 RNA pseudouridylate synthase V428_15875 PF01479 S4 domain V428_15880 PF11871 V428_15880 V428_15880 PF13487 HD domain V428_15890 PF00923 Transaldolase V428_15895 PF04055 Radical SAM superfamily V428_15895 PF13353 4Fe-4S single cluster domain V428_15900 PF01228 Glycine radical V428_15900 PF02901 Pyruvate formate lyase V428_15905 PF00455 V428_15905 V428_15905 PF08220 DeoR-like helix-turn-helix domain V428_15910 PF00892 EamA-like transporter family V428_15915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_15920 PF11042 V428_15920 V428_15940 PF00313 'Cold-shock' DNA-binding domain V428_15945 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_15945 PF00364 Biotin-requiring enzyme V428_15945 PF02817 e3 binding domain V428_15950 PF02779 Transketolase, pyrimidine binding domain V428_15950 PF02780 Transketolase, C-terminal domain V428_15955 PF00676 Dehydrogenase E1 component V428_15960 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V428_15965 PF06568 V428_15965 V428_15970 PF05472 DNA replication terminus site-binding protein (Ter protein) V428_15975 PF00176 SNF2 family N-terminal domain V428_15975 PF00271 Helicase conserved C-terminal domain V428_15980 PF04337 Protein of unknown function, DUF480 V428_15985 PF04932 V428_15985 V428_15985 PF11846 V428_15985 V428_15985 PF15864 V428_15985 V428_15990 PF06082 V428_15990 V428_15995 PF06251 Capsule biosynthesis GfcC V428_16000 PF02706 Chain length determinant protein V428_16000 PF13807 V428_16000 V428_16005 PF02563 Polysaccharide biosynthesis/export protein V428_16005 PF06251 Capsule biosynthesis GfcC V428_16005 PF10531 SLBB domain V428_16010 PF02706 Chain length determinant protein V428_16010 PF13807 V428_16010 V428_16020 PF00483 Nucleotidyl transferase V428_16025 PF04321 RmlD substrate binding domain V428_16030 PF00953 Glycosyl transferase family 4 V428_16045 PF00483 Nucleotidyl transferase V428_16045 PF01050 Mannose-6-phosphate isomerase V428_16055 PF01370 NAD dependent epimerase/dehydratase family V428_16060 PF16363 V428_16060 V428_16065 PF13692 Glycosyl transferases group 1 V428_16080 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_16095 PF16363 V428_16095 V428_16100 PF00873 AcrB/AcrD/AcrF family V428_16105 PF00529 HlyD family secretion protein V428_16105 PF16576 V428_16105 V428_16110 PF00440 Bacterial regulatory proteins, tetR family V428_16110 PF08361 MAATS-type transcriptional repressor, C-terminal region V428_16120 PF13489 Methyltransferase domain V428_16125 PF00375 Sodium:dicarboxylate symporter family V428_16130 PF13622 Thioesterase-like superfamily V428_16135 PF00849 RNA pseudouridylate synthase V428_16135 PF01479 S4 domain V428_16140 PF04079 Putative transcriptional regulators (Ypuh-like) V428_16145 PF02616 ScpA/B protein V428_16150 PF01300 Telomere recombination V428_16155 PF02811 PHP domain V428_16160 PF00425 chorismate binding enzyme V428_16160 PF04715 Anthranilate synthase component I, N terminal region V428_16165 PF00117 Glutamine amidotransferase class-I V428_16170 PF00591 Glycosyl transferase family, a/b domain V428_16170 PF02885 Glycosyl transferase family, helical bundle domain V428_16175 PF00218 Indole-3-glycerol phosphate synthase V428_16175 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase V428_16180 PF00291 Pyridoxal-phosphate dependent enzyme V428_16185 PF00290 Tryptophan synthase alpha chain V428_16205 PF11730 V428_16205 V428_16215 PF00030 Beta/Gamma crystallin V428_16220 PF08816 Inhibitor of vertebrate lysozyme (Ivy) V428_16225 PF01773 Na+ dependent nucleoside transporter N-terminus V428_16225 PF07662 Na+ dependent nucleoside transporter C-terminus V428_16225 PF07670 Nucleoside recognition V428_16230 PF02698 DUF218 domain V428_16230 PF13428 Tetratricopeptide repeat V428_16240 PF09704 CRISPR-associated protein (Cas_Cas5) V428_16255 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_16260 PF11726 V428_16260 V428_16265 PF11392 V428_16265 V428_16270 PF00857 Isochorismatase family V428_16275 PF00549 CoA-ligase V428_16275 PF02629 CoA binding domain V428_16280 PF06545 Protein of unknown function (DUF1116) V428_16285 PF00696 Amino acid kinase family V428_16290 PF06094 AIG2-like family V428_16295 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin V428_16300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_16300 PF03466 LysR substrate binding domain V428_16305 PF01381 Helix-turn-helix V428_16330 PF10980 Protein of unknown function (DUF2787) V428_16345 PF04002 RadC-like JAB domain V428_16390 PF02613 Nitrate reductase delta subunit V428_16395 PF00384 Molybdopterin oxidoreductase V428_16395 PF01568 Molydopterin dinucleotide binding domain V428_16400 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_16405 PF00072 Response regulator receiver domain V428_16405 PF00486 Transcriptional regulatory protein, C terminal V428_16410 PF04828 Glutathione-dependent formaldehyde-activating enzyme V428_16415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_16420 PF00072 Response regulator receiver domain V428_16420 PF00512 His Kinase A (phospho-acceptor) domain V428_16420 PF00672 HAMP domain V428_16420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_16425 PF07690 Major Facilitator Superfamily V428_16430 PF01040 UbiA prenyltransferase family V428_16435 PF03626 V428_16435 V428_16440 PF00510 Cytochrome c oxidase subunit III V428_16445 PF00115 Cytochrome C and Quinol oxidase polypeptide I V428_16450 PF00116 Cytochrome C oxidase subunit II, periplasmic domain V428_16450 PF06481 COX Aromatic Rich Motif V428_16455 PF13450 NAD(P)-binding Rossmann-like domain V428_16460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_16465 PF12321 V428_16465 V428_16470 PF01156 Inosine-uridine preferring nucleoside hydrolase V428_16475 PF05962 HutD V428_16485 PF00127 Copper binding proteins, plastocyanin/azurin family V428_16490 PF02424 ApbE family V428_16495 PF07690 Major Facilitator Superfamily V428_16500 PF00072 Response regulator receiver domain V428_16500 PF13432 Tetratricopeptide repeat V428_16500 PF14559 Tetratricopeptide repeat V428_16505 PF00805 Pentapeptide repeats (8 copies) V428_16505 PF07885 Ion channel V428_16510 PF03372 Endonuclease/Exonuclease/phosphatase family V428_16515 PF16576 V428_16515 V428_16520 PF00873 AcrB/AcrD/AcrF family V428_16530 PF11604 Copper binding periplasmic protein CusF V428_16530 PF16576 V428_16530 V428_16535 PF00873 AcrB/AcrD/AcrF family V428_16540 PF11604 Copper binding periplasmic protein CusF V428_16550 PF00282 Pyridoxal-dependent decarboxylase conserved domain V428_16555 PF03099 Biotin/lipoate A/B protein ligase family V428_16555 PF10437 Bacterial lipoate protein ligase C-terminus V428_16560 PF00990 GGDEF domain V428_16560 PF01814 Hemerythrin HHE cation binding domain V428_16560 PF08448 PAS fold V428_16560 PF09084 NMT1/THI5 like V428_16565 PF00873 AcrB/AcrD/AcrF family V428_16570 PF16576 V428_16570 V428_16580 PF04143 V428_16580 V428_16585 PF01022 Bacterial regulatory protein, arsR family V428_16590 PF11127 Protein of unknown function (DUF2892) V428_16600 PF02308 V428_16600 V428_16605 PF00356 Bacterial regulatory proteins, lacI family V428_16605 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_16610 PF00251 Glycosyl hydrolases family 32 N-terminal domain V428_16610 PF08244 Glycosyl hydrolases family 32 C terminal V428_16615 PF00367 phosphotransferase system, EIIB V428_16615 PF02378 Phosphotransferase system, EIIC V428_16620 PF00294 pfkB family carbohydrate kinase V428_16625 PF02264 LamB porin V428_16625 PF11471 V428_16625 V428_16630 PF00226 DnaJ domain V428_16630 PF00684 DnaJ central domain V428_16630 PF01556 DnaJ C terminal domain V428_16635 PF00012 Hsp70 protein V428_16640 PF01025 GrpE V428_16645 PF01513 ATP-NAD kinase V428_16650 PF02463 RecF/RecN/SMC N terminal domain V428_16660 PF01368 DHH family V428_16660 PF02833 DHHA2 domain V428_16665 PF00582 Universal stress protein family V428_16670 PF16576 V428_16670 V428_16675 PF00005 ABC transporter V428_16675 PF02687 V428_16675 V428_16675 PF12704 MacB-like periplasmic core domain V428_16680 PF02321 Outer membrane efflux protein V428_16685 PF04954 Siderophore-interacting protein V428_16685 PF08021 Siderophore-interacting FAD-binding domain V428_16690 PF00793 DAHP synthetase I family V428_16695 PF00816 H-NS histone family V428_16700 PF13673 Acetyltransferase (GNAT) domain V428_16705 PF08327 Activator of Hsp90 ATPase homolog 1-like protein V428_16710 PF01266 FAD dependent oxidoreductase V428_16715 PF07883 Cupin domain V428_16715 PF13560 Helix-turn-helix domain V428_16720 PF00171 Aldehyde dehydrogenase family V428_16725 PF00202 Aminotransferase class-III V428_16735 PF13520 Amino acid permease V428_16745 PF13520 Amino acid permease V428_16755 PF02690 V428_16755 V428_16760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_16760 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_16770 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase V428_16775 PF00072 Response regulator receiver domain V428_16775 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_16775 PF00512 His Kinase A (phospho-acceptor) domain V428_16775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_16775 PF08448 PAS fold V428_16780 PF00027 Cyclic nucleotide-binding domain V428_16785 PF07690 Major Facilitator Superfamily V428_16790 PF01048 Phosphorylase superfamily V428_16810 PF00005 ABC transporter V428_16825 PF14534 Domain of unknown function (DUF4440) V428_16830 PF00291 Pyridoxal-phosphate dependent enzyme V428_16830 PF14821 Threonine synthase N terminus V428_16835 PF00288 GHMP kinases N terminal domain V428_16835 PF08544 GHMP kinases C terminal V428_16840 PF00696 Amino acid kinase family V428_16840 PF00742 Homoserine dehydrogenase V428_16840 PF01842 ACT domain V428_16840 PF03447 Homoserine dehydrogenase, NAD binding domain V428_16840 PF13840 ACT domain V428_16845 PF00588 SpoU rRNA Methylase family V428_16850 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) V428_16855 PF03724 META domain V428_16865 PF03737 Demethylmenaquinone methyltransferase V428_16870 PF11697 V428_16870 V428_16880 PF00072 Response regulator receiver domain V428_16880 PF00486 Transcriptional regulatory protein, C terminal V428_16895 PF00005 ABC transporter V428_16895 PF00664 ABC transporter transmembrane region V428_16900 PF00005 ABC transporter V428_16900 PF00664 ABC transporter transmembrane region V428_16905 PF16358 V428_16905 V428_16910 PF04343 V428_16910 V428_16915 PF01370 NAD dependent epimerase/dehydratase family V428_16920 PF01980 Uncharacterised protein family UPF0066 V428_16925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V428_16925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V428_16930 PF05762 VWA domain containing CoxE-like protein V428_16935 PF00004 ATPase family associated with various cellular activities (AAA) V428_16940 PF00291 Pyridoxal-phosphate dependent enzyme V428_16945 PF00381 PTS HPr component phosphorylation site V428_16950 PF00391 PEP-utilising enzyme, mobile domain V428_16950 PF02896 PEP-utilising enzyme, TIM barrel domain V428_16950 PF05524 PEP-utilising enzyme, N-terminal V428_16955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V428_16960 PF00990 GGDEF domain V428_16970 PF01292 Prokaryotic cytochrome b561 V428_16975 PF04519 V428_16975 V428_16980 PF13476 AAA domain V428_16980 PF13558 Putative exonuclease SbcCD, C subunit V428_16990 PF00149 Calcineurin-like phosphoesterase V428_16990 PF12320 Type 5 capsule protein repressor C-terminal domain V428_16995 PF13508 Acetyltransferase (GNAT) domain V428_17000 PF04381 Putative exonuclease, RdgC V428_17010 PF01019 Gamma-glutamyltranspeptidase V428_17015 PF00999 Sodium/hydrogen exchanger family V428_17015 PF02254 TrkA-N domain V428_17020 PF04389 Peptidase family M28 V428_17030 PF00224 Pyruvate kinase, barrel domain V428_17030 PF02887 Pyruvate kinase, alpha/beta domain V428_17035 PF00924 Mechanosensitive ion channel V428_17035 PF12794 V428_17035 V428_17035 PF12795 V428_17035 V428_17045 PF10282 Lactonase, 7-bladed beta-propeller V428_17050 PF00860 Permease family V428_17060 PF16998 V428_17060 V428_17065 PF00390 Malic enzyme, N-terminal domain V428_17065 PF03949 Malic enzyme, NAD binding domain V428_17070 PF00072 Response regulator receiver domain V428_17070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_17075 PF01292 Prokaryotic cytochrome b561 V428_17080 PF13247 4Fe-4S dicluster domain V428_17085 PF00384 Molybdopterin oxidoreductase V428_17085 PF01568 Molydopterin dinucleotide binding domain V428_17085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_17095 PF02613 Nitrate reductase delta subunit V428_17100 PF00037 4Fe-4S binding domain V428_17105 PF11748 V428_17105 V428_17110 PF11749 V428_17110 V428_17125 PF02634 FdhD/NarQ family V428_17130 PF12727 PBP superfamily domain V428_17130 PF12728 Helix-turn-helix domain V428_17135 PF00512 His Kinase A (phospho-acceptor) domain V428_17135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_17135 PF17202 V428_17135 V428_17140 PF00072 Response regulator receiver domain V428_17140 PF00158 Sigma-54 interaction domain V428_17140 PF02954 Bacterial regulatory protein, Fis family V428_17145 PF12849 PBP superfamily domain V428_17150 PF00528 Binding-protein-dependent transport system inner membrane component V428_17155 PF00005 ABC transporter V428_17160 PF12804 MobA-like NTP transferase domain V428_17165 PF00994 Probable molybdopterin binding domain V428_17165 PF03205 Molybdopterin guanine dinucleotide synthesis protein B V428_17165 PF03453 MoeA N-terminal region (domain I and II) V428_17165 PF03454 MoeA C-terminal region (domain IV) V428_17170 PF04632 V428_17170 V428_17175 PF13487 HD domain V428_17180 PF11810 V428_17180 V428_17185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_17185 PF08447 PAS fold V428_17185 PF08448 PAS fold V428_17190 PF00583 Acetyltransferase (GNAT) family V428_17195 PF07681 V428_17195 V428_17200 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) V428_17205 PF05114 Protein of unknown function (DUF692) V428_17210 PF10048 V428_17210 V428_17215 PF10725 V428_17215 V428_17235 PF00072 Response regulator receiver domain V428_17235 PF00512 His Kinase A (phospho-acceptor) domain V428_17235 PF00672 HAMP domain V428_17235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_17240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_17245 PF00528 Binding-protein-dependent transport system inner membrane component V428_17250 PF00528 Binding-protein-dependent transport system inner membrane component V428_17250 PF12911 V428_17250 V428_17255 PF00005 ABC transporter V428_17255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_17260 PF00005 ABC transporter V428_17260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_17265 PF00759 Glycosyl hydrolase family 9 V428_17265 PF02927 N-terminal ig-like domain of cellulase V428_17270 PF01869 BadF/BadG/BcrA/BcrD ATPase family V428_17275 PF00728 Glycosyl hydrolase family 20, catalytic domain V428_17275 PF02838 Glycosyl hydrolase family 20, domain 2 V428_17290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_17300 PF01131 DNA topoisomerase V428_17300 PF01396 V428_17300 V428_17300 PF01751 Toprim domain V428_17300 PF08272 Topoisomerase I zinc-ribbon-like V428_17305 PF04996 Succinylarginine dihydrolase V428_17310 PF01343 Peptidase family S49 V428_17310 PF08496 V428_17310 V428_17315 PF00106 short chain dehydrogenase V428_17320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17320 PF03466 LysR substrate binding domain V428_17325 PF07690 Major Facilitator Superfamily V428_17330 PF00155 Aminotransferase class I and II V428_17335 PF16868 V428_17335 V428_17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17340 PF03466 LysR substrate binding domain V428_17345 PF00709 Adenylosuccinate synthetase V428_17350 PF01161 Phosphatidylethanolamine-binding protein V428_17355 PF12833 Helix-turn-helix domain V428_17360 PF01204 Trehalase V428_17365 PF00579 tRNA synthetases class I (W and Y) V428_17365 PF01479 S4 domain V428_17370 PF01551 Peptidase family M23 V428_17370 PF04225 Opacity-associated protein A LysM-like domain V428_17370 PF08525 V428_17370 V428_17385 PF03702 Uncharacterised protein family (UPF0075) V428_17395 PF01965 DJ-1/PfpI family V428_17400 PF01042 Endoribonuclease L-PSP V428_17425 PF00456 Transketolase, thiamine diphosphate binding domain V428_17425 PF02779 Transketolase, pyrimidine binding domain V428_17425 PF02780 Transketolase, C-terminal domain V428_17430 PF00438 S-adenosylmethionine synthetase, N-terminal domain V428_17430 PF02772 S-adenosylmethionine synthetase, central domain V428_17430 PF02773 S-adenosylmethionine synthetase, C-terminal domain V428_17435 PF10263 V428_17435 V428_17435 PF17283 V428_17435 V428_17440 PF04231 Endonuclease I V428_17445 PF04452 RNA methyltransferase V428_17450 PF02951 Prokaryotic glutathione synthetase, N-terminal domain V428_17450 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain V428_17455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_17455 PF12729 V428_17455 V428_17460 PF02622 Uncharacterized ACR, COG1678 V428_17465 PF03652 Uncharacterised protein family (UPF0081) V428_17470 PF00854 POT family V428_17475 PF00144 Beta-lactamase V428_17480 PF07726 ATPase family associated with various cellular activities (AAA) V428_17485 PF01882 V428_17485 V428_17490 PF01841 Transglutaminase-like superfamily V428_17490 PF11992 V428_17490 V428_17495 PF01235 V428_17495 V428_17500 PF00923 Transaldolase V428_17505 PF12065 V428_17505 V428_17510 PF01814 Hemerythrin HHE cation binding domain V428_17515 PF03167 Uracil DNA glycosylase superfamily V428_17520 PF01228 Glycine radical V428_17525 PF00375 Sodium:dicarboxylate symporter family V428_17530 PF00793 DAHP synthetase I family V428_17535 PF13369 V428_17535 V428_17535 PF13371 Tetratricopeptide repeat V428_17540 PF04247 V428_17540 V428_17545 PF13847 Methyltransferase domain V428_17550 PF00472 RF-1 domain V428_17550 PF03462 PCRF domain V428_17555 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain V428_17555 PF01488 Shikimate / quinate 5-dehydrogenase V428_17555 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain V428_17560 PF03550 Outer membrane lipoprotein LolB V428_17565 PF00288 GHMP kinases N terminal domain V428_17565 PF08544 GHMP kinases C terminal V428_17575 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase V428_17575 PF14572 Phosphoribosyl synthetase-associated domain V428_17580 PF00149 Calcineurin-like phosphoesterase V428_17580 PF02872 5'-nucleotidase, C-terminal domain V428_17585 PF01195 Peptidyl-tRNA hydrolase V428_17590 PF01926 50S ribosome-binding GTPase V428_17590 PF06071 Protein of unknown function (DUF933) V428_17635 PF02080 TrkA-C domain V428_17635 PF03600 Citrate transporter V428_17640 PF04973 V428_17640 V428_17645 PF01048 Phosphorylase superfamily V428_17650 PF00027 Cyclic nucleotide-binding domain V428_17655 PF04266 ASCH domain V428_17660 PF07784 V428_17660 V428_17665 PF00128 Alpha amylase, catalytic domain V428_17665 PF11941 Domain of unknown function (DUF3459) V428_17675 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V428_17675 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V428_17675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_17675 PF10371 Domain of unknown function V428_17675 PF12838 4Fe-4S dicluster domain V428_17675 PF17147 V428_17675 V428_17680 PF07690 Major Facilitator Superfamily V428_17685 PF13419 Haloacid dehalogenase-like hydrolase V428_17690 PF07063 Domain of unknown function (DUF1338) V428_17695 PF00171 Aldehyde dehydrogenase family V428_17700 PF04958 Arginine N-succinyltransferase beta subunit V428_17705 PF00202 Aminotransferase class-III V428_17710 PF00117 Glutamine amidotransferase class-I V428_17720 PF00579 tRNA synthetases class I (W and Y) V428_17725 PF13419 Haloacid dehalogenase-like hydrolase V428_17730 PF00834 Ribulose-phosphate 3 epimerase family V428_17735 PF02086 D12 class N6 adenine-specific DNA methyltransferase V428_17740 PF05036 Sporulation related domain V428_17745 PF01761 3-dehydroquinate synthase V428_17750 PF01202 Shikimate kinase V428_17755 PF00263 V428_17755 V428_17755 PF03958 Bacterial type II/III secretion system short domain V428_17760 PF04351 Pilus assembly protein, PilP V428_17765 PF04350 Pilus assembly protein, PilO V428_17770 PF05137 V428_17770 V428_17775 PF11104 Type IV pilus assembly protein PilM; V428_17780 PF00905 Penicillin binding protein transpeptidase domain V428_17780 PF00912 Transglycosylase V428_17780 PF17092 V428_17780 V428_17785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17785 PF03466 LysR substrate binding domain V428_17790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_17790 PF00672 HAMP domain V428_17790 PF12729 V428_17790 V428_17805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17805 PF03466 LysR substrate binding domain V428_17820 PF01551 Peptidase family M23 V428_17825 PF01554 MatE V428_17830 PF00924 Mechanosensitive ion channel V428_17830 PF12794 V428_17830 V428_17830 PF12795 V428_17830 V428_17835 PF03009 Glycerophosphoryl diester phosphodiesterase family V428_17840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_17840 PF00672 HAMP domain V428_17840 PF02743 Cache domain V428_17845 PF00890 FAD binding domain V428_17845 PF02910 Fumarate reductase flavoprotein C-term V428_17850 PF13085 2Fe-2S iron-sulfur cluster binding domain V428_17850 PF13183 4Fe-4S dicluster domain V428_17855 PF02300 Fumarate reductase subunit C V428_17860 PF02313 Fumarate reductase subunit D V428_17870 PF00440 Bacterial regulatory proteins, tetR family V428_17880 PF06224 V428_17880 V428_17885 PF13489 Methyltransferase domain V428_17890 PF12261 V428_17890 V428_17895 PF00501 AMP-binding enzyme V428_17900 PF14518 Iron-containing redox enzyme V428_17905 PF00106 short chain dehydrogenase V428_17910 PF13181 Tetratricopeptide repeat V428_17915 PF00072 Response regulator receiver domain V428_17915 PF00486 Transcriptional regulatory protein, C terminal V428_17920 PF00512 His Kinase A (phospho-acceptor) domain V428_17920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_17920 PF08521 V428_17920 V428_17925 PF05618 Putative ATP-dependant zinc protease V428_17930 PF00478 IMP dehydrogenase / GMP reductase domain V428_17935 PF10093 V428_17935 V428_17940 PF01132 Elongation factor P (EF-P) OB domain V428_17940 PF08207 Elongation factor P (EF-P) KOW-like domain V428_17940 PF09285 Elongation factor P, C-terminal V428_17945 PF09997 V428_17945 V428_17950 PF12048 V428_17950 V428_17955 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_17955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_17960 PF13488 V428_17960 V428_17965 PF00990 GGDEF domain V428_17970 PF00881 Nitroreductase family V428_17975 PF13419 Haloacid dehalogenase-like hydrolase V428_17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_17985 PF03466 LysR substrate binding domain V428_17990 PF00990 GGDEF domain V428_17990 PF08448 PAS fold V428_17995 PF00313 'Cold-shock' DNA-binding domain V428_17995 PF05901 V428_17995 V428_18000 PF00857 Isochorismatase family V428_18005 PF01494 FAD binding domain V428_18010 PF00919 Uncharacterized protein family UPF0004 V428_18010 PF01938 TRAM domain V428_18010 PF04055 Radical SAM superfamily V428_18015 PF02562 PhoH-like protein V428_18020 PF02130 Uncharacterized protein family UPF0054 V428_18025 PF00571 CBS domain V428_18025 PF03471 Transporter associated domain V428_18030 PF00795 Carbon-nitrogen hydrolase V428_18035 PF07295 V428_18035 V428_18040 PF00133 tRNA synthetases class I (I, L, M and V) V428_18040 PF08264 Anticodon-binding domain of tRNA V428_18040 PF13603 Leucyl-tRNA synthetase, Domain 2 V428_18045 PF04390 Lipopolysaccharide-assembly V428_18050 PF06144 DNA polymerase III, delta subunit V428_18050 PF14840 Processivity clamp loader gamma complex DNA pol III C-term V428_18055 PF01467 Cytidylyltransferase V428_18060 PF02410 Oligomerisation domain V428_18065 PF02590 Predicted SPOUT methyltransferase V428_18070 PF00905 Penicillin binding protein transpeptidase domain V428_18070 PF03717 Penicillin-binding Protein dimerisation domain V428_18075 PF01098 V428_18075 V428_18085 PF13406 Transglycosylase SLT domain V428_18090 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel V428_18090 PF05036 Sporulation related domain V428_18095 PF00768 D-alanyl-D-alanine carboxypeptidase V428_18095 PF07943 Penicillin-binding protein 5, C-terminal domain V428_18100 PF04359 Protein of unknown function (DUF493) V428_18105 PF03099 Biotin/lipoate A/B protein ligase family V428_18115 PF04055 Radical SAM superfamily V428_18115 PF16881 V428_18115 V428_18120 PF00583 Acetyltransferase (GNAT) family V428_18125 PF06821 Serine hydrolase V428_18130 PF02508 V428_18130 V428_18145 PF13411 MerR HTH family regulatory protein V428_18145 PF13649 Methyltransferase domain V428_18150 PF01368 DHH family V428_18150 PF02272 DHHA1 domain V428_18155 PF10411 Disulfide bond isomerase protein N-terminus V428_18155 PF13098 Thioredoxin-like domain V428_18160 PF01741 Large-conductance mechanosensitive channel, MscL V428_18165 PF00589 Phage integrase family V428_18165 PF02899 Phage integrase, N-terminal SAM-like domain V428_18170 PF00258 Flavodoxin V428_18175 PF01523 Putative modulator of DNA gyrase V428_18180 PF01523 Putative modulator of DNA gyrase V428_18190 PF01476 LysM domain V428_18190 PF03734 L,D-transpeptidase catalytic domain V428_18195 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase V428_18200 PF02668 Taurine catabolism dioxygenase TauD, TfdA family V428_18205 PF05141 Pyoverdine/dityrosine biosynthesis protein V428_18215 PF01734 Patatin-like phospholipase V428_18220 PF03372 Endonuclease/Exonuclease/phosphatase family V428_18225 PF00384 Molybdopterin oxidoreductase V428_18225 PF01568 Molydopterin dinucleotide binding domain V428_18230 PF03916 V428_18230 V428_18235 PF13247 4Fe-4S dicluster domain V428_18240 PF00512 His Kinase A (phospho-acceptor) domain V428_18240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_18240 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein V428_18245 PF00072 Response regulator receiver domain V428_18245 PF00196 Bacterial regulatory proteins, luxR family V428_18255 PF00072 Response regulator receiver domain V428_18255 PF04397 LytTr DNA-binding domain V428_18265 PF02554 V428_18265 V428_18265 PF13722 V428_18265 V428_18270 PF03575 Peptidase family S51 V428_18275 PF00206 Lyase V428_18275 PF10415 Fumarase C C-terminus V428_18280 PF06476 V428_18280 V428_18285 PF02635 DsrE/DsrF-like family V428_18290 PF00990 GGDEF domain V428_18290 PF11563 Protoglobin V428_18300 PF00013 KH domain V428_18300 PF00575 S1 RNA binding domain V428_18300 PF01138 3' exoribonuclease family, domain 1 V428_18300 PF03725 3' exoribonuclease family, domain 2 V428_18300 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain V428_18305 PF00312 Ribosomal protein S15 V428_18310 PF01509 TruB family pseudouridylate synthase (N terminal domain) V428_18310 PF09157 Pseudouridine synthase II TruB, C-terminal V428_18310 PF16198 V428_18310 V428_18315 PF02033 Ribosome-binding factor A V428_18320 PF00009 Elongation factor Tu GTP binding domain V428_18320 PF04760 Translation initiation factor IF-2, N-terminal region V428_18320 PF08364 V428_18320 V428_18320 PF11987 Translation-initiation factor 2 V428_18325 PF08529 NusA N-terminal domain V428_18325 PF13184 NusA-like KH domain V428_18325 PF14520 Helix-hairpin-helix domain V428_18330 PF02576 Uncharacterised BCR, YhbC family COG0779 V428_18330 PF17384 V428_18330 V428_18345 PF03840 Preprotein translocase SecG subunit V428_18350 PF00121 Triosephosphate isomerase V428_18355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V428_18355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V428_18355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V428_18355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V428_18360 PF00809 Pterin binding enzyme V428_18365 PF00004 ATPase family associated with various cellular activities (AAA) V428_18365 PF01434 Peptidase family M41 V428_18365 PF06480 FtsH Extracellular V428_18370 PF01728 FtsJ-like methyltransferase V428_18375 PF01985 CRS1 / YhbY (CRM) domain V428_18385 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_18385 PF03449 Transcription elongation factor, N-terminal V428_18390 PF00691 OmpA family V428_18390 PF13677 V428_18390 V428_18395 PF01618 V428_18395 V428_18400 PF02609 Exonuclease VII small subunit V428_18405 PF00348 Polyprenyl synthetase V428_18410 PF02779 Transketolase, pyrimidine binding domain V428_18410 PF02780 Transketolase, C-terminal domain V428_18410 PF13292 1-deoxy-D-xylulose-5-phosphate synthase V428_18415 PF00528 Binding-protein-dependent transport system inner membrane component V428_18415 PF12911 V428_18415 V428_18420 PF00528 Binding-protein-dependent transport system inner membrane component V428_18425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_18430 PF00005 ABC transporter V428_18430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_18435 PF04608 Phosphatidylglycerophosphatase A V428_18440 PF00586 AIR synthase related protein, N-terminal domain V428_18440 PF02769 AIR synthase related protein, C-terminal domain V428_18445 PF01029 NusB family V428_18450 PF00885 6,7-dimethyl-8-ribityllumazine synthase V428_18460 PF00925 GTP cyclohydrolase II V428_18460 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V428_18465 PF00677 Lumazine binding domain V428_18470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V428_18470 PF01872 RibD C-terminal domain V428_18475 PF03477 ATP cone domain V428_18480 PF07978 NIPSNAP V428_18490 PF00464 Serine hydroxymethyltransferase V428_18500 PF04828 Glutathione-dependent formaldehyde-activating enzyme V428_18505 PF02613 Nitrate reductase delta subunit V428_18525 PF00563 EAL domain V428_18525 PF00990 GGDEF domain V428_18525 PF08448 PAS fold V428_18525 PF13426 PAS domain V428_18535 PF00501 AMP-binding enzyme V428_18535 PF13193 AMP-binding enzyme C-terminal domain V428_18535 PF16177 V428_18535 V428_18545 PF01220 Dehydroquinase class II V428_18550 PF00364 Biotin-requiring enzyme V428_18555 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain V428_18555 PF02785 Biotin carboxylase C-terminal domain V428_18555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_18560 PF06196 V428_18560 V428_18565 PF00474 Sodium:solute symporter family V428_18570 PF00367 phosphotransferase system, EIIB V428_18570 PF02378 Phosphotransferase system, EIIC V428_18575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_18575 PF03466 LysR substrate binding domain V428_18580 PF08240 Alcohol dehydrogenase GroES-like domain V428_18580 PF13602 Zinc-binding dehydrogenase V428_18585 PF06325 Ribosomal protein L11 methyltransferase (PrmA) V428_18590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_18590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_18595 PF00132 Bacterial transferase hexapeptide (six repeats) V428_18595 PF12464 Maltose acetyltransferase V428_18600 PF00881 Nitroreductase family V428_18605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_18605 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_18610 PF01343 Peptidase family S49 V428_18615 PF00293 NUDIX domain V428_18620 PF11207 V428_18620 V428_18625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_18625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_18630 PF07023 V428_18630 V428_18635 PF00710 Asparaginase V428_18640 PF03616 V428_18640 V428_18645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_18645 PF00672 HAMP domain V428_18645 PF02743 Cache domain V428_18650 PF00472 RF-1 domain V428_18650 PF03462 PCRF domain V428_18655 PF00152 tRNA synthetases class II (D, K and N) V428_18655 PF01336 OB-fold nucleic acid binding domain V428_18660 PF02567 Phenazine biosynthesis-like protein V428_18665 PF00175 Oxidoreductase NAD-binding domain V428_18665 PF00258 Flavodoxin V428_18665 PF00667 FAD binding domain V428_18670 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_18670 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_18675 PF01507 Phosphoadenosine phosphosulfate reductase family V428_18680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system V428_18685 PF00528 Binding-protein-dependent transport system inner membrane component V428_18690 PF00005 ABC transporter V428_18690 PF00571 CBS domain V428_18695 PF00186 Dihydrofolate reductase V428_18700 PF12821 V428_18700 V428_18705 PF06738 V428_18705 V428_18710 PF11333 V428_18710 V428_18715 PF00994 Probable molybdopterin binding domain V428_18720 PF10807 V428_18720 V428_18725 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_18725 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_18730 PF13561 Enoyl-(Acyl carrier protein) reductase V428_18740 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_18740 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_18745 PF11659 V428_18745 V428_18755 PF03548 Outer membrane lipoprotein carrier protein LolA V428_18760 PF03061 Thioesterase superfamily V428_18765 PF00221 Aromatic amino acid lyase V428_18770 PF00535 Glycosyl transferase family 2 V428_18770 PF03279 V428_18770 V428_18775 PF07977 FabA-like domain V428_18780 PF00501 AMP-binding enzyme V428_18790 PF00550 Phosphopantetheine attachment site V428_18795 PF00550 Phosphopantetheine attachment site V428_18800 PF01553 Acyltransferase V428_18805 PF13723 V428_18805 V428_18815 PF00891 O-methyltransferase V428_18825 PF01223 DNA/RNA non-specific endonuclease V428_18830 PF00034 Cytochrome c V428_18830 PF03150 Di-haem cytochrome c peroxidase V428_18835 PF00194 Eukaryotic-type carbonic anhydrase V428_18840 PF04227 Indigoidine synthase A like protein V428_18845 PF00294 pfkB family carbohydrate kinase V428_18845 PF13412 Winged helix-turn-helix DNA-binding V428_18850 PF13806 Rieske-like [2Fe-2S] domain V428_18855 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_18855 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_18855 PF04324 BFD-like [2Fe-2S] binding domain V428_18855 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_18860 PF00005 ABC transporter V428_18865 PF00528 Binding-protein-dependent transport system inner membrane component V428_18870 PF13379 NMT1-like family V428_18875 PF03861 ANTAR domain V428_18880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_18885 PF00384 Molybdopterin oxidoreductase V428_18885 PF01568 Molydopterin dinucleotide binding domain V428_18885 PF04324 BFD-like [2Fe-2S] binding domain V428_18885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_18890 PF00588 SpoU rRNA Methylase family V428_18900 PF00582 Universal stress protein family V428_18905 PF13645 V428_18905 V428_18910 PF00171 Aldehyde dehydrogenase family V428_18915 PF00696 Amino acid kinase family V428_18915 PF01472 PUA domain V428_18920 PF07417 Transcriptional regulator Crl V428_18925 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) V428_18930 PF00156 Phosphoribosyl transferase domain V428_18935 PF01546 Peptidase family M20/M25/M40 V428_18935 PF07687 Peptidase dimerisation domain V428_18945 PF00005 ABC transporter V428_18945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_18950 PF00005 ABC transporter V428_18950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_18955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_18960 PF00528 Binding-protein-dependent transport system inner membrane component V428_18965 PF00528 Binding-protein-dependent transport system inner membrane component V428_18970 PF00593 TonB dependent receptor V428_18970 PF07715 TonB-dependent Receptor Plug Domain V428_18975 PF11932 V428_18975 V428_18980 PF01618 V428_18980 V428_18985 PF01618 V428_18985 V428_18990 PF02472 Biopolymer transport protein ExbD/TolR V428_18995 PF03544 Gram-negative bacterial TonB protein C-terminal V428_19000 PF13181 Tetratricopeptide repeat V428_19000 PF13432 Tetratricopeptide repeat V428_19005 PF00704 Glycosyl hydrolases family 18 V428_19005 PF06483 V428_19005 V428_19045 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_19050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_19050 PF00672 HAMP domain V428_19055 PF04225 Opacity-associated protein A LysM-like domain V428_19060 PF00313 'Cold-shock' DNA-binding domain V428_19090 PF00929 Exonuclease V428_19095 PF03193 Protein of unknown function, DUF258 V428_19100 PF02666 V428_19100 V428_19105 PF09905 Uncharacterized conserved protein (DUF2132) V428_19110 PF11173 V428_19110 V428_19125 PF00563 EAL domain V428_19125 PF00990 GGDEF domain V428_19125 PF08448 PAS fold V428_19125 PF13188 PAS domain V428_19130 PF06877 Regulator of ribonuclease activity B V428_19135 PF05547 V428_19135 V428_19155 PF00561 alpha/beta hydrolase fold V428_19160 PF00005 ABC transporter V428_19160 PF00664 ABC transporter transmembrane region V428_19165 PF06004 Bacterial protein of unknown function (DUF903) V428_19170 PF00082 Subtilase family V428_19175 PF00581 Rhodanese-like domain V428_19180 PF04960 Glutaminase V428_19185 PF04320 V428_19185 V428_19190 PF02390 Putative methyltransferase V428_19195 PF04389 Peptidase family M28 V428_19200 PF00155 Aminotransferase class I and II V428_19205 PF00563 EAL domain V428_19205 PF12792 V428_19205 V428_19210 PF01370 NAD dependent epimerase/dehydratase family V428_19210 PF08338 Domain of unknown function (DUF1731) V428_19215 PF02687 V428_19215 V428_19220 PF00005 ABC transporter V428_19225 PF13472 GDSL-like Lipase/Acylhydrolase family V428_19230 PF00072 Response regulator receiver domain V428_19230 PF01584 CheW-like domain V428_19240 PF02080 TrkA-C domain V428_19240 PF06826 V428_19240 V428_19245 PF03006 V428_19245 V428_19250 PF00282 Pyridoxal-dependent decarboxylase conserved domain V428_19255 PF04279 V428_19255 V428_19260 PF03795 YCII-related domain V428_19265 PF00459 Inositol monophosphatase family V428_19270 PF12836 Helix-hairpin-helix motif V428_19275 PF00483 Nucleotidyl transferase V428_19280 PF00854 POT family V428_19285 PF00072 Response regulator receiver domain V428_19295 PF01695 IstB-like ATP binding protein V428_19300 PF13460 NADH(P)-binding V428_19305 PF12698 ABC-2 family transporter protein V428_19310 PF12698 ABC-2 family transporter protein V428_19315 PF13437 HlyD family secretion protein V428_19315 PF13533 Biotin-lipoyl like V428_19320 PF02321 Outer membrane efflux protein V428_19330 PF01207 Dihydrouridine synthase (Dus) V428_19335 PF02954 Bacterial regulatory protein, Fis family V428_19340 PF01810 V428_19340 V428_19365 PF01521 Iron-sulphur cluster biosynthesis V428_19375 PF00654 Voltage gated chloride channel V428_19380 PF00202 Aminotransferase class-III V428_19390 PF01925 V428_19390 V428_19395 PF01569 PAP2 superfamily V428_19400 PF11157 V428_19400 V428_19405 PF00072 Response regulator receiver domain V428_19405 PF01966 HD domain V428_19405 PF11849 V428_19405 V428_19410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_19410 PF03466 LysR substrate binding domain V428_19415 PF00893 Small Multidrug Resistance protein V428_19420 PF00893 Small Multidrug Resistance protein V428_19425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_19430 PF00905 Penicillin binding protein transpeptidase domain V428_19430 PF00912 Transglycosylase V428_19430 PF14814 Bifunctional transglycosylase second domain V428_19435 PF00270 DEAD/DEAH box helicase V428_19435 PF00271 Helicase conserved C-terminal domain V428_19435 PF04408 Helicase associated domain (HA2) V428_19435 PF08482 V428_19435 V428_19440 PF13563 2'-5' RNA ligase superfamily V428_19445 PF03749 Sugar fermentation stimulation protein V428_19450 PF01258 Prokaryotic dksA/traR C4-type zinc finger V428_19455 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_19460 PF01743 Poly A polymerase head domain V428_19460 PF12626 Polymerase A arginine-rich C-terminus V428_19460 PF12627 Probable RNA and SrmB- binding site of polymerase A V428_19465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V428_19470 PF02548 Ketopantoate hydroxymethyltransferase V428_19475 PF02569 Pantoate-beta-alanine ligase V428_19480 PF00581 Rhodanese-like domain V428_19490 PF11823 V428_19490 V428_19495 PF01869 BadF/BadG/BcrA/BcrD ATPase family V428_19500 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component V428_19505 PF01061 V428_19505 V428_19510 PF00005 ABC transporter V428_19515 PF00156 Phosphoribosyl transferase domain V428_19520 PF00440 Bacterial regulatory proteins, tetR family V428_19525 PF02441 Flavoprotein V428_19530 PF01225 Mur ligase family, catalytic domain V428_19530 PF02875 Mur ligase family, glutamate ligase domain V428_19530 PF08245 Mur ligase middle domain V428_19535 PF00719 Inorganic pyrophosphatase V428_19550 PF09695 V428_19550 V428_19560 PF10986 V428_19560 V428_19565 PF00005 ABC transporter V428_19570 PF02687 V428_19570 V428_19570 PF12704 MacB-like periplasmic core domain V428_19575 PF11736 Protein of unknown function (DUF3299) V428_19580 PF10987 V428_19580 V428_19585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_19585 PF08447 PAS fold V428_19590 PF13280 V428_19590 V428_19600 PF16162 V428_19600 V428_19605 PF01583 Adenylylsulphate kinase V428_19610 PF02080 TrkA-C domain V428_19610 PF03600 Citrate transporter V428_19615 PF00009 Elongation factor Tu GTP binding domain V428_19620 PF01507 Phosphoadenosine phosphosulfate reductase family V428_19625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_19625 PF10414 Sirohaem synthase dimerisation region V428_19625 PF13241 Putative NAD(P)-binding V428_19625 PF14824 Sirohaem biosynthesis protein central V428_19630 PF01145 SPFH domain / Band 7 family V428_19635 PF01957 NfeD-like C-terminal, partner-binding V428_19640 PF00571 CBS domain V428_19645 PF00005 ABC transporter V428_19645 PF12848 ABC transporter V428_19645 PF16326 V428_19645 V428_19650 PF09523 V428_19650 V428_19655 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ V428_19660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_19660 PF03466 LysR substrate binding domain V428_19665 PF02525 Flavodoxin-like fold V428_19675 PF09834 V428_19675 V428_19680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_19700 PF00561 alpha/beta hydrolase fold V428_19705 PF00474 Sodium:solute symporter family V428_19710 PF03734 L,D-transpeptidase catalytic domain V428_19715 PF00924 Mechanosensitive ion channel V428_19720 PF00871 Acetokinase family V428_19725 PF04074 Domain of unknown function (DUF386) V428_19730 PF01553 Acyltransferase V428_19735 PF07731 Multicopper oxidase V428_19735 PF07732 Multicopper oxidase V428_19740 PF01177 Asp/Glu/Hydantoin racemase V428_19745 PF01810 V428_19745 V428_19750 PF01810 V428_19750 V428_19755 PF00155 Aminotransferase class I and II V428_19755 PF00392 Bacterial regulatory proteins, gntR family V428_19770 PF11340 V428_19770 V428_19780 PF00209 Sodium:neurotransmitter symporter family V428_19785 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_19790 PF00209 Sodium:neurotransmitter symporter family V428_19795 PF03171 2OG-Fe(II) oxygenase superfamily V428_19795 PF14226 non-haem dioxygenase in morphine synthesis N-terminal V428_19800 PF10973 V428_19800 V428_19805 PF08282 haloacid dehalogenase-like hydrolase V428_19810 PF07690 Major Facilitator Superfamily V428_19815 PF08279 HTH domain V428_19820 PF01037 AsnC family V428_19820 PF13412 Winged helix-turn-helix DNA-binding V428_19835 PF01047 MarR family V428_19840 PF02566 OsmC-like protein V428_19845 PF00107 Zinc-binding dehydrogenase V428_19845 PF16884 V428_19845 V428_19850 PF00293 NUDIX domain V428_19855 PF02417 V428_19855 V428_19860 PF01641 SelR domain V428_19865 PF00128 Alpha amylase, catalytic domain V428_19865 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_19870 PF00128 Alpha amylase, catalytic domain V428_19870 PF02806 Alpha amylase, C-terminal all-beta domain V428_19870 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_19875 PF02446 4-alpha-glucanotransferase V428_19880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_19880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_19885 PF01263 Aldose 1-epimerase V428_19890 PF02445 Quinolinate synthetase A protein V428_19895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_19895 PF02743 Cache domain V428_19940 PF13174 Tetratricopeptide repeat V428_19940 PF13432 Tetratricopeptide repeat V428_19940 PF16331 V428_19940 V428_19945 PF00691 OmpA family V428_19950 PF04052 TolB amino-terminal domain V428_19950 PF07676 WD40-like Beta Propeller Repeat V428_19955 PF06519 TolA C-terminal V428_19960 PF02472 Biopolymer transport protein ExbD/TolR V428_19965 PF01618 V428_19965 V428_19970 PF03061 Thioesterase superfamily V428_19975 PF09600 V428_19975 V428_19980 PF08173 V428_19980 V428_19985 PF02322 V428_19985 V428_19990 PF01654 V428_19990 V428_19995 PF05491 Holliday junction DNA helicase ruvB C-terminus V428_19995 PF05496 Holliday junction DNA helicase ruvB N-terminus V428_20000 PF01330 RuvA N terminal domain V428_20000 PF07499 RuvA, C-terminal domain V428_20000 PF14520 Helix-hairpin-helix domain V428_20005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_20005 PF00672 HAMP domain V428_20010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_20010 PF03129 Anticodon binding domain V428_20010 PF04073 Aminoacyl-tRNA editing domain V428_20015 PF00106 short chain dehydrogenase V428_20025 PF04314 Protein of unknown function (DUF461) V428_20030 PF00378 Enoyl-CoA hydratase/isomerase family V428_20035 PF10952 V428_20035 V428_20045 PF00132 Bacterial transferase hexapeptide (six repeats) V428_20050 PF08857 Putative ParB-like nuclease V428_20055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_20065 PF14467 Domain of unknown function (DUF4426) V428_20070 PF02594 Uncharacterised ACR, YggU family COG1872 V428_20075 PF02325 V428_20075 V428_20080 PF03807 NADP oxidoreductase coenzyme F420-dependent V428_20080 PF14748 Pyrroline-5-carboxylate reductase dimerisation V428_20085 PF01168 Alanine racemase, N-terminal domain V428_20090 PF00437 Type II/IV secretion system protein V428_20095 PF00437 Type II/IV secretion system protein V428_20100 PF03883 V428_20100 V428_20105 PF00270 DEAD/DEAH box helicase V428_20105 PF00271 Helicase conserved C-terminal domain V428_20110 PF05175 Methyltransferase small domain V428_20115 PF05525 V428_20115 V428_20120 PF05525 V428_20120 V428_20130 PF13690 Chemotaxis phosphatase CheX V428_20135 PF01475 Ferric uptake regulator family V428_20140 PF01207 Dihydrouridine synthase (Dus) V428_20155 PF00216 Bacterial DNA-binding protein V428_20160 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ V428_20165 PF07238 PilZ domain V428_20170 PF13481 AAA domain V428_20170 PF13541 Subunit ChlI of Mg-chelatase V428_20175 PF07238 PilZ domain V428_20180 PF00561 alpha/beta hydrolase fold V428_20185 PF12710 haloacid dehalogenase-like hydrolase V428_20190 PF10144 V428_20190 V428_20195 PF00989 PAS fold V428_20195 PF00990 GGDEF domain V428_20195 PF01590 GAF domain V428_20195 PF08447 PAS fold V428_20195 PF08448 PAS fold V428_20200 PF01048 Phosphorylase superfamily V428_20205 PF01676 Metalloenzyme superfamily V428_20210 PF00591 Glycosyl transferase family, a/b domain V428_20210 PF02885 Glycosyl transferase family, helical bundle domain V428_20210 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain V428_20215 PF01791 DeoC/LacD family aldolase V428_20225 PF01773 Na+ dependent nucleoside transporter N-terminus V428_20225 PF07662 Na+ dependent nucleoside transporter C-terminus V428_20225 PF07670 Nucleoside recognition V428_20230 PF01026 TatD related DNase V428_20235 PF07963 Prokaryotic N-terminal methylation motif V428_20240 PF01938 TRAM domain V428_20240 PF05958 tRNA (Uracil-5-)-methyltransferase V428_20245 PF00909 Ammonium Transporter Family V428_20250 PF00589 Phage integrase family V428_20260 PF00717 Peptidase S24-like V428_20275 PF06892 V428_20275 V428_20285 PF01381 Helix-turn-helix V428_20315 PF05840 V428_20315 V428_20350 PF04606 V428_20350 V428_20370 PF03237 Terminase-like family V428_20370 PF06056 Putative ATPase subunit of terminase (gpP-like) V428_20370 PF17289 V428_20370 V428_20375 PF05929 V428_20375 V428_20380 PF05125 V428_20380 V428_20385 PF05944 V428_20385 V428_20390 PF05926 V428_20390 V428_20395 PF06891 V428_20395 V428_20400 PF05069 V428_20400 V428_20405 PF10758 V428_20405 V428_20410 PF10772 V428_20410 V428_20415 PF01258 Prokaryotic dksA/traR C4-type zinc finger V428_20420 PF05106 V428_20420 V428_20425 PF00959 Phage lysozyme V428_20440 PF10963 V428_20440 V428_20445 PF10145 V428_20445 V428_20450 PF10761 V428_20450 V428_20455 PF04865 V428_20455 V428_20460 PF09684 V428_20460 V428_20465 PF12571 V428_20465 V428_20465 PF13472 GDSL-like Lipase/Acylhydrolase family V428_20490 PF06271 V428_20490 V428_20495 PF03739 V428_20495 V428_20505 PF03739 V428_20505 V428_20510 PF00883 Cytosol aminopeptidase family, catalytic domain V428_20510 PF02789 Cytosol aminopeptidase family, N-terminal domain V428_20515 PF04364 DNA polymerase III chi subunit, HolC V428_20520 PF00133 tRNA synthetases class I (I, L, M and V) V428_20520 PF08264 Anticodon-binding domain of tRNA V428_20520 PF10458 Valyl tRNA synthetase tRNA binding arm V428_20525 PF00571 CBS domain V428_20525 PF01595 V428_20525 V428_20525 PF03471 Transporter associated domain V428_20530 PF09335 V428_20530 V428_20535 PF00768 D-alanyl-D-alanine carboxypeptidase V428_20570 PF02599 Global regulator protein family V428_20575 PF00696 Amino acid kinase family V428_20575 PF01842 ACT domain V428_20575 PF13840 ACT domain V428_20580 PF01411 tRNA synthetases class II (A) V428_20580 PF02272 DHHA1 domain V428_20580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V428_20585 PF02631 RecX family V428_20590 PF00154 recA bacterial DNA recombination protein V428_20595 PF02464 Competence-damaged protein V428_20615 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_20620 PF00488 MutS domain V V428_20620 PF01624 MutS domain I V428_20620 PF05188 MutS domain II V428_20620 PF05190 MutS family domain IV V428_20620 PF05192 MutS domain III V428_20625 PF02028 BCCT family transporter V428_20635 PF01047 MarR family V428_20640 PF04222 Protein of unknown function (DUF416) V428_20645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_20650 PF01551 Peptidase family M23 V428_20650 PF04225 Opacity-associated protein A LysM-like domain V428_20655 PF16448 V428_20655 V428_20660 PF16868 V428_20660 V428_20665 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP V428_20670 PF01297 Periplasmic solute binding protein family V428_20675 PF00005 ABC transporter V428_20680 PF00950 V428_20680 V428_20690 PF00892 EamA-like transporter family V428_20695 PF03167 Uracil DNA glycosylase superfamily V428_20700 PF00892 EamA-like transporter family V428_20705 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_20710 PF01541 GIY-YIG catalytic domain V428_20715 PF09583 V428_20715 V428_20720 PF04024 V428_20720 V428_20725 PF04012 V428_20725 V428_20730 PF01553 Acyltransferase V428_20740 PF02683 V428_20740 V428_20740 PF11412 Disulphide bond corrector protein DsbC V428_20740 PF13899 Thioredoxin-like V428_20745 PF13462 Thioredoxin V428_20755 PF08534 Redoxin V428_20760 PF00226 DnaJ domain V428_20795 PF00521 DNA gyrase/topoisomerase IV, subunit A V428_20795 PF03989 DNA gyrase C-terminal domain, beta-propeller V428_20800 PF00204 DNA gyrase B V428_20800 PF00986 DNA gyrase B subunit, carboxyl terminus V428_20800 PF01751 Toprim domain V428_20800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_20805 PF04632 V428_20805 V428_20810 PF16576 V428_20810 V428_20815 PF07869 V428_20815 V428_20820 PF04828 Glutathione-dependent formaldehyde-activating enzyme V428_20825 PF00293 NUDIX domain V428_20825 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal V428_20830 PF05728 Uncharacterised protein family (UPF0227) V428_20835 PF00149 Calcineurin-like phosphoesterase V428_20840 PF06853 V428_20840 V428_20845 PF00293 NUDIX domain V428_20850 PF02321 Outer membrane efflux protein V428_20855 PF00294 pfkB family carbohydrate kinase V428_20855 PF01467 Cytidylyltransferase V428_20860 PF03279 V428_20860 V428_20865 PF03544 Gram-negative bacterial TonB protein C-terminal V428_20870 PF01928 CYTH domain V428_20875 PF01865 Protein of unknown function DUF47 V428_20880 PF01384 V428_20880 V428_20885 PF04073 Aminoacyl-tRNA editing domain V428_20890 PF13302 Acetyltransferase (GNAT) domain V428_20895 PF00581 Rhodanese-like domain V428_20900 PF02566 OsmC-like protein V428_20905 PF00155 Aminotransferase class I and II V428_20905 PF00392 Bacterial regulatory proteins, gntR family V428_20910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_20910 PF03466 LysR substrate binding domain V428_20915 PF03788 V428_20915 V428_20920 PF04172 V428_20920 V428_20935 PF01743 Poly A polymerase head domain V428_20935 PF01966 HD domain V428_20935 PF12627 Probable RNA and SrmB- binding site of polymerase A V428_20945 PF01471 Putative peptidoglycan binding domain V428_20945 PF13401 AAA domain V428_20950 PF16537 V428_20950 V428_20955 PF00633 Helix-hairpin-helix motif V428_20955 PF00730 HhH-GPD superfamily base excision DNA repair protein V428_20955 PF10576 Iron-sulfur binding domain of endonuclease III V428_20955 PF14815 NUDIX domain V428_20960 PF04362 Bacterial Fe(2+) trafficking V428_20965 PF01464 Transglycosylase SLT domain V428_20965 PF11873 Domain of unknown function (DUF3393) V428_20970 PF04076 Bacterial OB fold (BOF) protein V428_20975 PF00657 GDSL-like Lipase/Acylhydrolase V428_20980 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_20985 PF00691 OmpA family V428_20985 PF01389 OmpA-like transmembrane domain V428_20990 PF03886 Protein of unknown function (DUF330) V428_20995 PF02470 V428_20995 V428_21000 PF04403 V428_21000 V428_21005 PF17209 V428_21005 V428_21010 PF13419 Haloacid dehalogenase-like hydrolase V428_21015 PF08668 HDOD domain V428_21020 PF00990 GGDEF domain V428_21025 PF00701 Dihydrodipicolinate synthetase family V428_21030 PF05175 Methyltransferase small domain V428_21030 PF08468 Methyltransferase small domain N-terminal V428_21035 PF00132 Bacterial transferase hexapeptide (six repeats) V428_21035 PF00483 Nucleotidyl transferase V428_21040 PF00534 Glycosyl transferases group 1 V428_21040 PF08323 Starch synthase catalytic domain V428_21070 PF10719 V428_21070 V428_21080 PF03553 V428_21080 V428_21085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_21085 PF03466 LysR substrate binding domain V428_21090 PF13416 Bacterial extracellular solute-binding protein V428_21095 PF00005 ABC transporter V428_21095 PF08402 TOBE domain V428_21100 PF00528 Binding-protein-dependent transport system inner membrane component V428_21105 PF00528 Binding-protein-dependent transport system inner membrane component V428_21110 PF00171 Aldehyde dehydrogenase family V428_21120 PF00892 EamA-like transporter family V428_21125 PF01037 AsnC family V428_21125 PF13404 AsnC-type helix-turn-helix domain V428_21130 PF12464 Maltose acetyltransferase V428_21130 PF14602 Hexapeptide repeat of succinyl-transferase V428_21135 PF00128 Alpha amylase, catalytic domain V428_21135 PF16657 V428_21135 V428_21140 PF00367 phosphotransferase system, EIIB V428_21140 PF02378 Phosphotransferase system, EIIC V428_21145 PF00356 Bacterial regulatory proteins, lacI family V428_21145 PF13377 Periplasmic binding protein-like domain V428_21150 PF03547 V428_21150 V428_21155 PF00403 Heavy-metal-associated domain V428_21160 PF00710 Asparaginase V428_21165 PF01699 Sodium/calcium exchanger protein V428_21170 PF14163 V428_21170 V428_21175 PF02142 MGS-like domain V428_21180 PF05960 Bacterial protein of unknown function (DUF885) V428_21185 PF00210 Ferritin-like domain V428_21190 PF04324 BFD-like [2Fe-2S] binding domain V428_21195 PF10115 V428_21195 V428_21200 PF05127 Helicase V428_21200 PF08351 Domain of unknown function (DUF1726) V428_21200 PF13718 GNAT acetyltransferase 2 V428_21200 PF17176 V428_21200 V428_21205 PF00106 short chain dehydrogenase V428_21210 PF00072 Response regulator receiver domain V428_21210 PF01584 CheW-like domain V428_21220 PF08020 Protein of unknown function (DUF1706) V428_21230 PF07885 Ion channel V428_21255 PF02660 V428_21255 V428_21260 PF02152 Dihydroneopterin aldolase V428_21265 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V428_21270 PF04073 Aminoacyl-tRNA editing domain V428_21275 PF07690 Major Facilitator Superfamily V428_21280 PF02492 CobW/HypB/UreG, nucleotide-binding domain V428_21280 PF07683 Cobalamin synthesis protein cobW C-terminal domain V428_21290 PF01810 V428_21290 V428_21295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_21295 PF03466 LysR substrate binding domain V428_21305 PF00330 Aconitase family (aconitate hydratase) V428_21305 PF06434 Aconitate hydratase 2 N-terminus V428_21305 PF11791 Aconitate B N-terminal domain V428_21310 PF01734 Patatin-like phospholipase V428_21315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_21315 PF00672 HAMP domain V428_21315 PF02743 Cache domain V428_21320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_21320 PF12729 V428_21320 V428_21330 PF00990 GGDEF domain V428_21330 PF01590 GAF domain V428_21335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_21335 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_21340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_21340 PF00364 Biotin-requiring enzyme V428_21340 PF02817 e3 binding domain V428_21345 PF00456 Transketolase, thiamine diphosphate binding domain V428_21350 PF00392 Bacterial regulatory proteins, gntR family V428_21350 PF07729 FCD domain V428_21355 PF01510 N-acetylmuramoyl-L-alanine amidase V428_21360 PF13975 V428_21360 V428_21365 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain V428_21365 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain V428_21375 PF00437 Type II/IV secretion system protein V428_21375 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V428_21380 PF00482 Type II secretion system (T2SS), protein F V428_21385 PF01478 Type IV leader peptidase family V428_21385 PF06750 V428_21385 V428_21390 PF01121 Dephospho-CoA kinase V428_21395 PF07072 Protein of unknown function (DUF1342) V428_21400 PF03884 Domain of unknown function (DUF329) V428_21405 PF00293 NUDIX domain V428_21410 PF14559 Tetratricopeptide repeat V428_21415 PF01043 SecA preprotein cross-linking domain V428_21415 PF02810 SEC-C motif V428_21415 PF07516 SecA Wing and Scaffold domain V428_21415 PF07517 SecA DEAD-like domain V428_21420 PF01551 Peptidase family M23 V428_21425 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase V428_21430 PF00091 Tubulin/FtsZ family, GTPase domain V428_21430 PF12327 FtsZ family, C-terminal domain V428_21435 PF02491 SHS2 domain inserted in FTSA V428_21435 PF14450 Cell division protein FtsA V428_21440 PF03799 Cell division protein FtsQ V428_21440 PF08478 POTRA domain, FtsQ-type V428_21445 PF01225 Mur ligase family, catalytic domain V428_21445 PF02875 Mur ligase family, glutamate ligase domain V428_21445 PF08245 Mur ligase middle domain V428_21450 PF03033 Glycosyltransferase family 28 N-terminal domain V428_21450 PF04101 Glycosyltransferase family 28 C-terminal domain V428_21455 PF01098 V428_21455 V428_21460 PF02875 Mur ligase family, glutamate ligase domain V428_21460 PF08245 Mur ligase middle domain V428_21465 PF00953 Glycosyl transferase family 4 V428_21465 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 V428_21470 PF01225 Mur ligase family, catalytic domain V428_21470 PF02875 Mur ligase family, glutamate ligase domain V428_21470 PF08245 Mur ligase middle domain V428_21475 PF01225 Mur ligase family, catalytic domain V428_21475 PF02875 Mur ligase family, glutamate ligase domain V428_21475 PF08245 Mur ligase middle domain V428_21480 PF00905 Penicillin binding protein transpeptidase domain V428_21480 PF03717 Penicillin-binding Protein dimerisation domain V428_21485 PF04999 V428_21485 V428_21490 PF01795 MraW methylase family V428_21495 PF02381 MraZ protein V428_21500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_21505 PF04348 LppC putative lipoprotein V428_21510 PF02021 Uncharacterised protein family UPF0102 V428_21515 PF13580 SIS domain V428_21520 PF04972 BON domain V428_21525 PF04386 Stringent starvation protein B V428_21530 PF00043 Glutathione S-transferase, C-terminal domain V428_21530 PF13417 Glutathione S-transferase, N-terminal domain V428_21535 PF02167 Cytochrome C1 family V428_21540 PF00032 Cytochrome b(C-terminal)/b6/petD V428_21540 PF00033 Cytochrome b(N-terminal)/b6/petB V428_21545 PF00355 Rieske [2Fe-2S] domain V428_21545 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal V428_21550 PF00380 Ribosomal protein S9/S16 V428_21555 PF00572 Ribosomal protein L13 V428_21560 PF03969 AFG1-like ATPase V428_21565 PF06295 V428_21565 V428_21570 PF00595 PDZ domain (Also known as DHR or GLGF) V428_21570 PF13180 PDZ domain V428_21570 PF13365 Trypsin-like peptidase domain V428_21575 PF13180 PDZ domain V428_21575 PF13365 Trypsin-like peptidase domain V428_21585 PF14272 V428_21585 V428_21590 PF14189 V428_21590 V428_21595 PF14188 V428_21595 V428_21600 PF14187 V428_21600 V428_21605 PF01979 Amidohydrolase family V428_21610 PF03841 L-seryl-tRNA selenium transferase V428_21615 PF07071 Protein of unknown function (DUF1341) V428_21620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_21620 PF00874 PRD domain V428_21620 PF05043 Mga helix-turn-helix domain V428_21620 PF08279 HTH domain V428_21625 PF00381 PTS HPr component phosphorylation site V428_21630 PF03668 V428_21630 V428_21635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_21640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V428_21645 PF00309 V428_21645 V428_21645 PF04552 Sigma-54, DNA binding domain V428_21645 PF04963 Sigma-54 factor, core binding domain V428_21650 PF00005 ABC transporter V428_21650 PF12399 Branched-chain amino acid ATP-binding cassette transporter V428_21655 PF03968 OstA-like protein V428_21660 PF06835 Lipopolysaccharide-assembly, LptC-related V428_21665 PF08282 haloacid dehalogenase-like hydrolase V428_21670 PF00571 CBS domain V428_21670 PF01380 SIS domain V428_21675 PF00005 ABC transporter V428_21680 PF02405 V428_21680 V428_21685 PF02470 V428_21685 V428_21690 PF05494 Toluene tolerance, Ttg2 V428_21695 PF13466 STAS domain V428_21700 PF01722 BolA-like protein V428_21705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V428_21710 PF01523 Putative modulator of DNA gyrase V428_21715 PF04751 Protein of unknown function (DUF615) V428_21720 PF00912 Transglycosylase V428_21725 PF04363 V428_21725 V428_21755 PF05940 V428_21755 V428_21760 PF01381 Helix-turn-helix V428_21760 PF07883 Cupin domain V428_21765 PF03594 V428_21765 V428_21770 PF11301 V428_21770 V428_21775 PF02219 Methylenetetrahydrofolate reductase V428_21785 PF13673 Acetyltransferase (GNAT) domain V428_21790 PF01547 Bacterial extracellular solute-binding protein V428_21795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_21795 PF12729 V428_21795 V428_21800 PF03922 OmpW family V428_21815 PF00005 ABC transporter V428_21820 PF00196 Bacterial regulatory proteins, luxR family V428_21825 PF00436 Single-strand binding protein family V428_21830 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_21840 PF01545 Cation efflux family V428_21840 PF16916 V428_21840 V428_21845 PF11656 V428_21845 V428_21850 PF00313 'Cold-shock' DNA-binding domain V428_21855 PF00593 TonB dependent receptor V428_21855 PF07715 TonB-dependent Receptor Plug Domain V428_21860 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_21860 PF00990 GGDEF domain V428_21865 PF00512 His Kinase A (phospho-acceptor) domain V428_21865 PF00672 HAMP domain V428_21865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_21870 PF00072 Response regulator receiver domain V428_21870 PF00486 Transcriptional regulatory protein, C terminal V428_21895 PF00990 GGDEF domain V428_21895 PF08447 PAS fold V428_21905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_21910 PF13304 AAA domain V428_21915 PF13538 UvrD-like helicase C-terminal domain V428_21915 PF13604 AAA domain V428_21920 PF00580 UvrD/REP helicase N-terminal domain V428_21920 PF12705 PD-(D/E)XK nuclease superfamily V428_21920 PF13361 UvrD-like helicase C-terminal domain V428_21925 PF04257 Exodeoxyribonuclease V, gamma subunit V428_21930 PF07681 V428_21930 V428_21935 PF02678 Pirin V428_21945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_21945 PF03466 LysR substrate binding domain V428_21950 PF13443 Cro/C1-type HTH DNA-binding domain V428_21955 PF00392 Bacterial regulatory proteins, gntR family V428_21955 PF07702 UTRA domain V428_21960 PF13343 Bacterial extracellular solute-binding protein V428_21965 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase V428_21970 PF00528 Binding-protein-dependent transport system inner membrane component V428_21975 PF00528 Binding-protein-dependent transport system inner membrane component V428_21980 PF00005 ABC transporter V428_21980 PF08402 TOBE domain V428_21985 PF12710 haloacid dehalogenase-like hydrolase V428_21990 PF00990 GGDEF domain V428_21990 PF02743 Cache domain V428_21995 PF09980 V428_21995 V428_22000 PF00892 EamA-like transporter family V428_22005 PF06445 GyrI-like small molecule binding domain V428_22005 PF12833 Helix-turn-helix domain V428_22010 PF00583 Acetyltransferase (GNAT) family V428_22015 PF00199 Catalase V428_22015 PF06628 Catalase-related immune-responsive V428_22020 PF07383 V428_22020 V428_22030 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_22040 PF00293 NUDIX domain V428_22040 PF01569 PAP2 superfamily V428_22045 PF01594 V428_22045 V428_22050 PF00106 short chain dehydrogenase V428_22055 PF04371 Porphyromonas-type peptidyl-arginine deiminase V428_22060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_22060 PF03466 LysR substrate binding domain V428_22065 PF00158 Sigma-54 interaction domain V428_22065 PF00989 PAS fold V428_22065 PF02954 Bacterial regulatory protein, Fis family V428_22070 PF00465 Iron-containing alcohol dehydrogenase V428_22075 PF00381 PTS HPr component phosphorylation site V428_22075 PF03610 PTS system fructose IIA component V428_22080 PF02734 DAK2 domain V428_22085 PF02733 Dak1 domain V428_22090 PF00860 Permease family V428_22095 PF07883 Cupin domain V428_22130 PF13242 HAD-hyrolase-like V428_22140 PF00009 Elongation factor Tu GTP binding domain V428_22140 PF00679 Elongation factor G C-terminus V428_22140 PF03144 Elongation factor Tu domain 2 V428_22140 PF03764 Elongation factor G, domain IV V428_22140 PF14492 Elongation Factor G, domain II V428_22145 PF00177 Ribosomal protein S7p/S5e V428_22150 PF00164 Ribosomal protein S12/S23 V428_22155 PF04077 DsrH like protein V428_22160 PF02635 DsrE/DsrF-like family V428_22165 PF02635 DsrE/DsrF-like family V428_22170 PF01042 Endoribonuclease L-PSP V428_22175 PF08348 V428_22175 V428_22175 PF13309 V428_22175 V428_22180 PF12762 V428_22180 V428_22185 PF00623 RNA polymerase Rpb1, domain 2 V428_22185 PF04983 RNA polymerase Rpb1, domain 3 V428_22185 PF04997 RNA polymerase Rpb1, domain 1 V428_22185 PF04998 RNA polymerase Rpb1, domain 5 V428_22185 PF05000 RNA polymerase Rpb1, domain 4 V428_22190 PF00562 RNA polymerase Rpb2, domain 6 V428_22190 PF04560 RNA polymerase Rpb2, domain 7 V428_22190 PF04561 RNA polymerase Rpb2, domain 2 V428_22190 PF04563 RNA polymerase beta subunit V428_22190 PF04565 RNA polymerase Rpb2, domain 3 V428_22190 PF10385 RNA polymerase beta subunit external 1 domain V428_22195 PF00542 Ribosomal protein L7/L12 C-terminal domain V428_22195 PF16320 V428_22195 V428_22200 PF00466 Ribosomal protein L10 V428_22205 PF00687 Ribosomal protein L1p/L10e family V428_22210 PF00298 Ribosomal protein L11, RNA binding domain V428_22210 PF03946 Ribosomal protein L11, N-terminal domain V428_22215 PF00467 KOW motif V428_22215 PF02357 Transcription termination factor nusG V428_22220 PF00584 SecE/Sec61-gamma subunits of protein translocation complex V428_22245 PF00485 Phosphoribulokinase / Uridine kinase family V428_22250 PF02237 Biotin protein ligase C terminal domain V428_22250 PF03099 Biotin/lipoate A/B protein ligase family V428_22250 PF08279 HTH domain V428_22255 PF01565 FAD binding domain V428_22255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain V428_22260 PF02254 TrkA-N domain V428_22265 PF02386 Cation transport protein V428_22270 PF12833 Helix-turn-helix domain V428_22270 PF12852 Cupin V428_22275 PF02627 Carboxymuconolactone decarboxylase family V428_22280 PF04224 V428_22280 V428_22285 PF01131 DNA topoisomerase V428_22285 PF01751 Toprim domain V428_22290 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_22295 PF00384 Molybdopterin oxidoreductase V428_22295 PF01568 Molydopterin dinucleotide binding domain V428_22295 PF10518 TAT (twin-arginine translocation) pathway signal sequence V428_22305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_22310 PF00072 Response regulator receiver domain V428_22310 PF00486 Transcriptional regulatory protein, C terminal V428_22320 PF13670 V428_22320 V428_22325 PF01794 V428_22325 V428_22330 PF00174 Oxidoreductase molybdopterin binding domain V428_22340 PF06496 V428_22340 V428_22345 PF00072 Response regulator receiver domain V428_22345 PF00158 Sigma-54 interaction domain V428_22355 PF00512 His Kinase A (phospho-acceptor) domain V428_22355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_22365 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V428_22370 PF13561 Enoyl-(Acyl carrier protein) reductase V428_22375 PF00571 CBS domain V428_22380 PF10063 V428_22380 V428_22385 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_22390 PF01037 AsnC family V428_22390 PF13412 Winged helix-turn-helix DNA-binding V428_22395 PF03590 Aspartate-ammonia ligase V428_22400 PF00753 Metallo-beta-lactamase superfamily V428_22405 PF00004 ATPase family associated with various cellular activities (AAA) V428_22405 PF02861 Clp amino terminal domain V428_22405 PF07724 AAA domain (Cdc48 subfamily) V428_22405 PF10431 C-terminal, D2-small domain, of ClpB protein V428_22410 PF02578 Multi-copper polyphenol oxidoreductase laccase V428_22415 PF00849 RNA pseudouridylate synthase V428_22415 PF01479 S4 domain V428_22420 PF13525 Outer membrane lipoprotein V428_22425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_22425 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_22430 PF00375 Sodium:dicarboxylate symporter family V428_22435 PF03313 V428_22435 V428_22440 PF08348 V428_22440 V428_22440 PF13309 V428_22440 V428_22445 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_22450 PF02233 NAD(P) transhydrogenase beta subunit V428_22455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V428_22455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V428_22455 PF12769 Domain of unknown function (DUF3814) V428_22460 PF00465 Iron-containing alcohol dehydrogenase V428_22465 PF06719 V428_22465 V428_22465 PF12833 Helix-turn-helix domain V428_22470 PF08212 Lipocalin-like domain V428_22475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_22475 PF00672 HAMP domain V428_22475 PF02743 Cache domain V428_22480 PF02666 V428_22480 V428_22480 PF12588 V428_22480 V428_22495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_22495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_22500 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain V428_22500 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain V428_22505 PF01316 Arginine repressor, DNA binding domain V428_22505 PF02863 Arginine repressor, C-terminal domain V428_22510 PF03606 V428_22510 V428_22515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_22515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_22520 PF00696 Amino acid kinase family V428_22525 PF02274 Amidinotransferase V428_22535 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V428_22545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_22550 PF02653 V428_22550 V428_22555 PF00005 ABC transporter V428_22560 PF13407 Periplasmic binding protein domain V428_22565 PF00703 Glycosyl hydrolases family 2 V428_22565 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V428_22565 PF02837 Glycosyl hydrolases family 2, sugar binding domain V428_22565 PF02929 Beta galactosidase small chain V428_22565 PF16353 V428_22565 V428_22570 PF00356 Bacterial regulatory proteins, lacI family V428_22570 PF13377 Periplasmic binding protein-like domain V428_22575 PF16363 V428_22575 V428_22580 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain V428_22580 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain V428_22585 PF00288 GHMP kinases N terminal domain V428_22585 PF08544 GHMP kinases C terminal V428_22585 PF10509 Galactokinase galactose-binding signature V428_22590 PF01263 Aldose 1-epimerase V428_22595 PF00248 Aldo/keto reductase family V428_22600 PF02673 V428_22600 V428_22605 PF12973 ChrR Cupin-like domain V428_22610 PF04542 Sigma-70 region 2 V428_22610 PF04545 Sigma-70, region 4 V428_22615 PF02190 ATP-dependent protease La (LON) domain V428_22620 PF00750 tRNA synthetases class I (R) V428_22620 PF03485 Arginyl tRNA synthetase N terminal domain V428_22620 PF05746 DALR anticodon binding domain V428_22625 PF05036 Sporulation related domain V428_22630 PF00227 Proteasome subunit V428_22635 PF00004 ATPase family associated with various cellular activities (AAA) V428_22635 PF07724 AAA domain (Cdc48 subfamily) V428_22635 PF10431 C-terminal, D2-small domain, of ClpB protein V428_22640 PF07690 Major Facilitator Superfamily V428_22645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_22645 PF03466 LysR substrate binding domain V428_22650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_22650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_22650 PF04324 BFD-like [2Fe-2S] binding domain V428_22650 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_22660 PF13806 Rieske-like [2Fe-2S] domain V428_22665 PF01226 Formate/nitrite transporter V428_22670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_22670 PF10414 Sirohaem synthase dimerisation region V428_22670 PF13241 Putative NAD(P)-binding V428_22670 PF14824 Sirohaem biosynthesis protein central V428_22675 PF00571 CBS domain V428_22675 PF01769 Divalent cation transporter V428_22675 PF03448 MgtE intracellular N domain V428_22680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_22685 PF03737 Demethylmenaquinone methyltransferase V428_22690 PF02592 V428_22690 V428_22695 PF12305 V428_22695 V428_22700 PF02696 V428_22700 V428_22705 PF00034 Cytochrome c V428_22710 PF00270 DEAD/DEAH box helicase V428_22710 PF00271 Helicase conserved C-terminal domain V428_22710 PF00570 HRDC domain V428_22710 PF09382 RQC domain V428_22710 PF16124 V428_22710 V428_22715 PF03061 Thioesterase superfamily V428_22730 PF03473 MOSC domain V428_22730 PF03475 3-alpha domain V428_22735 PF00528 Binding-protein-dependent transport system inner membrane component V428_22740 PF00528 Binding-protein-dependent transport system inner membrane component V428_22745 PF00005 ABC transporter V428_22745 PF08402 TOBE domain V428_22750 PF13416 Bacterial extracellular solute-binding protein V428_22755 PF13416 Bacterial extracellular solute-binding protein V428_22760 PF00202 Aminotransferase class-III V428_22765 PF00120 Glutamine synthetase, catalytic domain V428_22770 PF01258 Prokaryotic dksA/traR C4-type zinc finger V428_22780 PF06127 V428_22780 V428_22785 PF05981 V428_22785 V428_22790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_22790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_22795 PF00012 Hsp70 protein V428_22800 PF03724 META domain V428_22805 PF08668 HDOD domain V428_22810 PF00128 Alpha amylase, catalytic domain V428_22810 PF16657 V428_22810 V428_22815 PF01923 Cobalamin adenosyltransferase V428_22825 PF05958 tRNA (Uracil-5-)-methyltransferase V428_22830 PF00072 Response regulator receiver domain V428_22830 PF00486 Transcriptional regulatory protein, C terminal V428_22835 PF00512 His Kinase A (phospho-acceptor) domain V428_22835 PF00672 HAMP domain V428_22835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_22845 PF00390 Malic enzyme, N-terminal domain V428_22845 PF03949 Malic enzyme, NAD binding domain V428_22850 PF11066 V428_22850 V428_22850 PF13460 NADH(P)-binding V428_22855 PF01197 Ribosomal protein L31 V428_22860 PF00270 DEAD/DEAH box helicase V428_22860 PF00271 Helicase conserved C-terminal domain V428_22870 PF00691 OmpA family V428_22870 PF01389 OmpA-like transmembrane domain V428_22875 PF00291 Pyridoxal-phosphate dependent enzyme V428_22875 PF00585 C-terminal regulatory domain of Threonine dehydratase V428_22880 PF00920 Dehydratase family V428_22885 PF01063 Aminotransferase class IV V428_22890 PF13710 ACT domain V428_22895 PF00205 Thiamine pyrophosphate enzyme, central domain V428_22895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_22895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_22900 PF01078 Magnesium chelatase, subunit ChlI V428_22900 PF13335 V428_22900 V428_22900 PF13541 Subunit ChlI of Mg-chelatase V428_22905 PF01553 Acyltransferase V428_22910 PF01553 Acyltransferase V428_22915 PF04463 V428_22915 V428_22925 PF00857 Isochorismatase family V428_22930 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family V428_22935 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein V428_22940 PF00005 ABC transporter V428_22945 PF00528 Binding-protein-dependent transport system inner membrane component V428_22950 PF01323 DSBA-like thioredoxin domain V428_22955 PF01636 Phosphotransferase enzyme family V428_22960 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase V428_22960 PF12801 V428_22960 V428_22960 PF13746 4Fe-4S dicluster domain V428_22965 PF06288 Protein of unknown function (DUF1040) V428_22970 PF00990 GGDEF domain V428_22975 PF00376 MerR family regulatory protein V428_22975 PF09278 MerR, DNA binding V428_22980 PF00122 E1-E2 ATPase V428_22980 PF00403 Heavy-metal-associated domain V428_22980 PF00702 haloacid dehalogenase-like hydrolase V428_22985 PF00156 Phosphoribosyl transferase domain V428_22990 PF01138 3' exoribonuclease family, domain 1 V428_22990 PF03725 3' exoribonuclease family, domain 2 V428_22995 PF03755 V428_22995 V428_22995 PF08340 V428_22995 V428_23000 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_23005 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_23015 PF01755 V428_23015 V428_23020 PF04932 V428_23020 V428_23025 PF01522 Polysaccharide deacetylase V428_23025 PF13439 Glycosyltransferase Family 4 V428_23025 PF13692 Glycosyl transferases group 1 V428_23030 PF01370 NAD dependent epimerase/dehydratase family V428_23035 PF00440 Bacterial regulatory proteins, tetR family V428_23035 PF13972 Bacterial transcriptional repressor V428_23040 PF00155 Aminotransferase class I and II V428_23045 PF00107 Zinc-binding dehydrogenase V428_23045 PF08240 Alcohol dehydrogenase GroES-like domain V428_23050 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_23055 PF00563 EAL domain V428_23055 PF00990 GGDEF domain V428_23060 PF00580 UvrD/REP helicase N-terminal domain V428_23060 PF13361 UvrD-like helicase C-terminal domain V428_23065 PF00266 Aminotransferase class-V V428_23070 PF02657 Fe-S metabolism associated domain V428_23075 PF00899 ThiF family V428_23110 PF03544 Gram-negative bacterial TonB protein C-terminal V428_23115 PF02472 Biopolymer transport protein ExbD/TolR V428_23120 PF01618 V428_23120 V428_23125 PF01618 V428_23125 V428_23130 PF11932 V428_23130 V428_23135 PF00196 Bacterial regulatory proteins, luxR family V428_23135 PF03472 Autoinducer binding domain V428_23140 PF01380 SIS domain V428_23140 PF13522 Glutamine amidotransferase domain V428_23145 PF00455 V428_23145 V428_23145 PF08220 DeoR-like helix-turn-helix domain V428_23150 PF00072 Response regulator receiver domain V428_23150 PF00486 Transcriptional regulatory protein, C terminal V428_23155 PF00512 His Kinase A (phospho-acceptor) domain V428_23155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_23160 PF00905 Penicillin binding protein transpeptidase domain V428_23165 PF06123 V428_23165 V428_23170 PF00132 Bacterial transferase hexapeptide (six repeats) V428_23170 PF12804 MobA-like NTP transferase domain V428_23175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain V428_23175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain V428_23180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_23180 PF02874 ATP synthase alpha/beta family, beta-barrel domain V428_23185 PF00231 ATP synthase V428_23190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_23190 PF00306 ATP synthase alpha/beta chain, C terminal domain V428_23190 PF02874 ATP synthase alpha/beta family, beta-barrel domain V428_23195 PF00213 ATP synthase delta (OSCP) subunit V428_23200 PF00430 ATP synthase B/B' CF(0) V428_23205 PF00137 ATP synthase subunit C V428_23210 PF00119 ATP synthase A chain V428_23215 PF03899 V428_23215 V428_23220 PF02195 ParB-like nuclease domain V428_23225 PF13614 AAA domain V428_23230 PF02527 rRNA small subunit methyltransferase G V428_23235 PF01134 Glucose inhibited division protein A V428_23235 PF13932 GidA associated domain 3 V428_23240 PF00258 Flavodoxin V428_23245 PF00593 TonB dependent receptor V428_23245 PF07715 TonB-dependent Receptor Plug Domain V428_23250 PF00005 ABC transporter V428_23255 PF00005 ABC transporter V428_23260 PF01497 Periplasmic binding protein V428_23265 PF01032 FecCD transport family V428_23270 PF01926 50S ribosome-binding GTPase V428_23270 PF10396 GTP-binding protein TrmE N-terminus V428_23270 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE V428_23275 PF02096 60Kd inner membrane protein V428_23275 PF14849 YidC periplasmic domain V428_23280 PF00825 Ribonuclease P V428_23285 PF00468 Ribosomal protein L34 V428_23290 PF00005 ABC transporter V428_23295 PF00528 Binding-protein-dependent transport system inner membrane component V428_23300 PF00497 Bacterial extracellular solute-binding proteins, family 3