locus-tag class description LDP97_00015 PF00072 Response regulator receiver domain LDP97_00020 PF00854 POT family LDP97_00025 PF00483 Nucleotidyl transferase LDP97_00035 PF00459 Inositol monophosphatase family LDP97_00040 PF03795 YCII-related domain LDP97_00045 PF04279 Intracellular septation protein A LDP97_00050 PF00282 Pyridoxal-dependent decarboxylase conserved domain LDP97_00055 PF03006 Haemolysin-III related LDP97_00060 PF06826 Predicted Permease Membrane Region LDP97_00060 PF02080 TrkA-C domain LDP97_00095 PF00072 Response regulator receiver domain LDP97_00095 PF01584 CheW-like domain LDP97_00100 PF13472 GDSL-like Lipase/Acylhydrolase family LDP97_00105 PF00005 ABC transporter LDP97_00115 PF08338 Domain of unknown function (DUF1731) LDP97_00115 PF01370 NAD dependent epimerase/dehydratase family LDP97_00120 PF12792 CSS motif domain associated with EAL LDP97_00120 PF00563 EAL domain LDP97_00125 PF00155 Aminotransferase class I and II LDP97_00130 PF04389 Peptidase family M28 LDP97_00130 PF01483 Proprotein convertase P-domain LDP97_00135 PF02390 Putative methyltransferase LDP97_00140 PF04320 Protein with unknown function (DUF469) LDP97_00145 PF04960 Glutaminase LDP97_00150 PF00581 Rhodanese-like domain LDP97_00155 PF00082 Subtilase family LDP97_00155 PF05922 Peptidase inhibitor I9 LDP97_00160 PF06004 Bacterial protein of unknown function (DUF903) LDP97_00165 PF00005 ABC transporter LDP97_00165 PF00664 ABC transporter transmembrane region LDP97_00170 PF00561 alpha/beta hydrolase fold LDP97_00185 PF00801 PKD domain LDP97_00185 PF05547 Immune inhibitor A peptidase M6 LDP97_00190 PF06877 Regulator of ribonuclease activity B LDP97_00195 PF03707 Bacterial signalling protein N terminal repeat LDP97_00195 PF00990 Diguanylate cyclase, GGDEF domain LDP97_00195 PF00563 EAL domain LDP97_00215 PF09905 DNA-binding protein VF530 LDP97_00220 PF02666 Phosphatidylserine decarboxylase LDP97_00225 PF03193 RsgA GTPase LDP97_00230 PF00929 Exonuclease LDP97_00270 PF00313 'Cold-shock' DNA-binding domain LDP97_00280 PF00672 HAMP domain LDP97_00280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_00285 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDP97_00290 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDP97_00295 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDP97_00315 PF00704 Glycosyl hydrolases family 18 LDP97_00315 PF06483 Chitinase C LDP97_00330 PF02472 Biopolymer transport protein ExbD/TolR LDP97_00335 PF01618 MotA/TolQ/ExbB proton channel family LDP97_00340 PF01618 MotA/TolQ/ExbB proton channel family LDP97_00350 PF00593 TonB dependent receptor LDP97_00350 PF07715 TonB-dependent Receptor Plug Domain LDP97_00355 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_00360 PF12911 N-terminal TM domain of oligopeptide transport permease C LDP97_00360 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_00370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_00370 PF00005 ABC transporter LDP97_00375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_00375 PF00005 ABC transporter LDP97_00380 PF07687 Peptidase dimerisation domain LDP97_00380 PF01546 Peptidase family M20/M25/M40 LDP97_00385 PF00156 Phosphoribosyl transferase domain LDP97_00390 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LDP97_00395 PF07417 Sigma factor-binding transcriptional regulator Crl LDP97_00400 PF00696 Amino acid kinase family LDP97_00400 PF01472 PUA domain LDP97_00405 PF00171 Aldehyde dehydrogenase family LDP97_00415 PF00582 Universal stress protein family LDP97_00430 PF00384 Molybdopterin oxidoreductase LDP97_00430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDP97_00430 PF04324 BFD-like [2Fe-2S] binding domain LDP97_00430 PF01568 Molydopterin dinucleotide binding domain LDP97_00435 PF10414 Sirohaem synthase dimerisation region LDP97_00435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDP97_00435 PF14824 Sirohaem biosynthesis protein central LDP97_00445 PF00005 ABC transporter LDP97_00450 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_00455 PF00005 ABC transporter LDP97_00460 PF04324 BFD-like [2Fe-2S] binding domain LDP97_00460 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDP97_00460 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDP97_00460 PF13806 Rieske-like [2Fe-2S] domain LDP97_00460 PF18267 Rubredoxin NAD+ reductase C-terminal domain LDP97_00460 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_00465 PF04324 BFD-like [2Fe-2S] binding domain LDP97_00465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDP97_00465 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_00465 PF13806 Rieske-like [2Fe-2S] domain LDP97_00465 PF18267 Rubredoxin NAD+ reductase C-terminal domain LDP97_00465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDP97_00470 PF00294 pfkB family carbohydrate kinase LDP97_00475 PF04227 Indigoidine synthase A like protein LDP97_00480 PF00194 Eukaryotic-type carbonic anhydrase LDP97_00485 PF03150 Di-haem cytochrome c peroxidase LDP97_00485 PF00034 Cytochrome c LDP97_00520 PF00550 Phosphopantetheine attachment site LDP97_00525 PF00550 Phosphopantetheine attachment site LDP97_00535 PF00501 AMP-binding enzyme LDP97_00535 PF13193 AMP-binding enzyme C-terminal domain LDP97_00540 PF07977 FabA-like domain LDP97_00550 PF00221 Aromatic amino acid lyase LDP97_00575 PF02801 Beta-ketoacyl synthase, C-terminal domain LDP97_00575 PF00109 Beta-ketoacyl synthase, N-terminal domain LDP97_00590 PF02801 Beta-ketoacyl synthase, C-terminal domain LDP97_00590 PF00109 Beta-ketoacyl synthase, N-terminal domain LDP97_00600 PF00994 Probable molybdopterin binding domain LDP97_00615 PF06738 Putative threonine/serine exporter LDP97_00620 PF12821 Threonine/Serine exporter, ThrE LDP97_00625 PF00186 Dihydrofolate reductase LDP97_00630 PF00005 ABC transporter LDP97_00630 PF00571 CBS domain LDP97_00635 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_00640 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LDP97_00645 PF01507 Phosphoadenosine phosphosulfate reductase family LDP97_00650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDP97_00650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDP97_00655 PF00667 FAD binding domain LDP97_00655 PF00258 Flavodoxin LDP97_00655 PF00175 Oxidoreductase NAD-binding domain LDP97_00660 PF02567 Phenazine biosynthesis-like protein LDP97_00665 PF00152 tRNA synthetases class II (D, K and N) LDP97_00665 PF01336 OB-fold nucleic acid binding domain LDP97_00675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_00675 PF00672 HAMP domain LDP97_00675 PF02743 Cache domain LDP97_00680 PF03616 Sodium/glutamate symporter LDP97_00685 PF17763 Glutaminase/Asparaginase C-terminal domain LDP97_00685 PF00710 Asparaginase, N-terminal LDP97_00690 PF07023 Protein of unknown function (DUF1315) LDP97_00695 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDP97_00695 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDP97_00710 PF01343 Peptidase family S49 LDP97_00715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDP97_00715 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_00720 PF00881 Nitroreductase family LDP97_00725 PF14602 Hexapeptide repeat of succinyl-transferase LDP97_00725 PF12464 Maltose acetyltransferase LDP97_00730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDP97_00730 PF01842 ACT domain LDP97_00730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDP97_00740 PF00107 Zinc-binding dehydrogenase LDP97_00740 PF08240 Alcohol dehydrogenase GroES-like domain LDP97_00745 PF03466 LysR substrate binding domain LDP97_00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_00750 PF00367 phosphotransferase system, EIIB LDP97_00750 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDP97_00750 PF02378 Phosphotransferase system, EIIC LDP97_00755 PF00474 Sodium:solute symporter family LDP97_00765 PF00289 Biotin carboxylase, N-terminal domain LDP97_00765 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDP97_00765 PF02785 Biotin carboxylase C-terminal domain LDP97_00770 PF00364 Biotin-requiring enzyme LDP97_00775 PF01220 Dehydroquinase class II LDP97_00780 PF16177 Acetyl-coenzyme A synthetase N-terminus LDP97_00780 PF00501 AMP-binding enzyme LDP97_00780 PF13193 AMP-binding enzyme C-terminal domain LDP97_00790 PF00563 EAL domain LDP97_00790 PF00990 Diguanylate cyclase, GGDEF domain LDP97_00790 PF03707 Bacterial signalling protein N terminal repeat LDP97_00790 PF13188 PAS domain LDP97_00810 PF02613 Nitrate reductase delta subunit LDP97_00825 PF00464 Serine hydroxymethyltransferase LDP97_00840 PF03477 ATP cone domain LDP97_00845 PF01872 RibD C-terminal domain LDP97_00845 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDP97_00850 PF00677 Lumazine binding domain LDP97_00855 PF00925 GTP cyclohydrolase II LDP97_00855 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LDP97_00865 PF00885 6,7-dimethyl-8-ribityllumazine synthase LDP97_00870 PF01029 NusB family LDP97_00875 PF02769 AIR synthase related protein, C-terminal domain LDP97_00875 PF00586 AIR synthase related protein, N-terminal domain LDP97_00880 PF04608 Phosphatidylglycerophosphatase A LDP97_00885 PF00005 ABC transporter LDP97_00885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_00890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_00895 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_00900 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_00900 PF12911 N-terminal TM domain of oligopeptide transport permease C LDP97_00905 PF02780 Transketolase, C-terminal domain LDP97_00905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LDP97_00905 PF02779 Transketolase, pyrimidine binding domain LDP97_00910 PF00348 Polyprenyl synthetase LDP97_00915 PF02609 Exonuclease VII small subunit LDP97_00920 PF01618 MotA/TolQ/ExbB proton channel family LDP97_00925 PF00691 OmpA family LDP97_00925 PF13677 Membrane MotB of proton-channel complex MotA/MotB LDP97_00930 PF01272 Transcription elongation factor, GreA/GreB, C-term LDP97_00930 PF03449 Transcription elongation factor, N-terminal LDP97_00940 PF01985 CRS1 / YhbY (CRM) domain LDP97_00945 PF01728 FtsJ-like methyltransferase LDP97_00950 PF17862 AAA+ lid domain LDP97_00950 PF00004 ATPase family associated with various cellular activities (AAA) LDP97_00950 PF06480 FtsH Extracellular LDP97_00950 PF01434 Peptidase family M41 LDP97_00955 PF00809 Pterin binding enzyme LDP97_00960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDP97_00960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDP97_00960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDP97_00960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDP97_00965 PF00121 Triosephosphate isomerase LDP97_00970 PF03840 Preprotein translocase SecG subunit LDP97_00985 PF02576 RimP N-terminal domain LDP97_00985 PF17384 RimP C-terminal SH3 domain LDP97_00990 PF08529 NusA N-terminal domain LDP97_00990 PF00575 S1 RNA binding domain LDP97_00990 PF13184 NusA-like KH domain LDP97_00995 PF04760 Translation initiation factor IF-2, N-terminal region LDP97_00995 PF11987 Translation-initiation factor 2 LDP97_00995 PF00009 Elongation factor Tu GTP binding domain LDP97_00995 PF08364 Bacterial translation initiation factor IF-2 associated region LDP97_01000 PF02033 Ribosome-binding factor A LDP97_01005 PF09157 Pseudouridine synthase II TruB, C-terminal LDP97_01005 PF01509 TruB family pseudouridylate synthase (N terminal domain) LDP97_01005 PF16198 tRNA pseudouridylate synthase B C-terminal domain LDP97_01010 PF00312 Ribosomal protein S15 LDP97_01015 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LDP97_01015 PF01138 3' exoribonuclease family, domain 1 LDP97_01015 PF03725 3' exoribonuclease family, domain 2 LDP97_01015 PF00575 S1 RNA binding domain LDP97_01015 PF00013 KH domain LDP97_01025 PF00563 EAL domain LDP97_01025 PF00990 Diguanylate cyclase, GGDEF domain LDP97_01025 PF03707 Bacterial signalling protein N terminal repeat LDP97_01030 PF02635 DsrE/DsrF-like family LDP97_01040 PF00206 Lyase LDP97_01040 PF10415 Fumarase C C-terminus LDP97_01045 PF03575 Peptidase family S51 LDP97_01050 PF02554 Carbon starvation protein CstA LDP97_01050 PF13722 5TM C-terminal transporter carbon starvation CstA LDP97_01055 PF04397 LytTr DNA-binding domain LDP97_01055 PF00072 Response regulator receiver domain LDP97_01065 PF00196 Bacterial regulatory proteins, luxR family LDP97_01065 PF00072 Response regulator receiver domain LDP97_01070 PF00512 His Kinase A (phospho-acceptor) domain LDP97_01070 PF00989 PAS fold LDP97_01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_01075 PF13247 4Fe-4S dicluster domain LDP97_01080 PF03916 Polysulphide reductase, NrfD LDP97_01085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDP97_01085 PF01568 Molydopterin dinucleotide binding domain LDP97_01085 PF00384 Molybdopterin oxidoreductase LDP97_01110 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LDP97_01115 PF17969 L,D-transpeptidase C-terminal domain LDP97_01115 PF03734 L,D-transpeptidase catalytic domain LDP97_01125 PF01523 Putative modulator of DNA gyrase LDP97_01130 PF01523 Putative modulator of DNA gyrase LDP97_01135 PF00258 Flavodoxin LDP97_01140 PF02899 Phage integrase, N-terminal SAM-like domain LDP97_01140 PF00589 Phage integrase family LDP97_01145 PF01741 Large-conductance mechanosensitive channel, MscL LDP97_01150 PF13098 Thioredoxin-like domain LDP97_01150 PF10411 Disulfide bond isomerase protein N-terminus LDP97_01155 PF01368 DHH family LDP97_01155 PF17768 RecJ OB domain LDP97_01155 PF02272 DHHA1 domain LDP97_01160 PF13411 MerR HTH family regulatory protein LDP97_01180 PF02508 Rnf-Nqr subunit, membrane protein LDP97_01185 PF06821 Serine hydrolase LDP97_01195 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LDP97_01195 PF04055 Radical SAM superfamily LDP97_01200 PF03099 Biotin/lipoate A/B protein ligase family LDP97_01205 PF04359 Protein of unknown function (DUF493) LDP97_01215 PF07943 Penicillin-binding protein 5, C-terminal domain LDP97_01215 PF00768 D-alanyl-D-alanine carboxypeptidase LDP97_01220 PF03330 Lytic transglycolase LDP97_01220 PF05036 Sporulation related domain LDP97_01225 PF13406 Transglycosylase SLT domain LDP97_01235 PF03717 Penicillin-binding Protein dimerisation domain LDP97_01235 PF00905 Penicillin binding protein transpeptidase domain LDP97_01240 PF02590 Predicted SPOUT methyltransferase LDP97_01250 PF01467 Cytidylyltransferase-like LDP97_01265 PF08264 Anticodon-binding domain of tRNA LDP97_01265 PF13603 Leucyl-tRNA synthetase, Domain 2 LDP97_01265 PF00133 tRNA synthetases class I (I, L, M and V) LDP97_01270 PF07295 Zinc-ribbon containing domain LDP97_01275 PF00795 Carbon-nitrogen hydrolase LDP97_01280 PF00571 CBS domain LDP97_01280 PF03471 Transporter associated domain LDP97_01285 PF02130 Uncharacterized protein family UPF0054 LDP97_01290 PF02562 PhoH-like protein LDP97_01295 PF04055 Radical SAM superfamily LDP97_01295 PF01938 TRAM domain LDP97_01295 PF00919 Uncharacterized protein family UPF0004 LDP97_01300 PF01494 FAD binding domain LDP97_01305 PF00857 Isochorismatase family LDP97_01310 PF00313 'Cold-shock' DNA-binding domain LDP97_01315 PF00990 Diguanylate cyclase, GGDEF domain LDP97_01315 PF05230 MASE2 domain LDP97_01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_01320 PF03466 LysR substrate binding domain LDP97_01330 PF13419 Haloacid dehalogenase-like hydrolase LDP97_01340 PF00990 Diguanylate cyclase, GGDEF domain LDP97_01350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDP97_01350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDP97_01360 PF09997 Predicted membrane protein (DUF2238) LDP97_01365 PF01132 Elongation factor P (EF-P) OB domain LDP97_01365 PF08207 Elongation factor P (EF-P) KOW-like domain LDP97_01365 PF09285 Elongation factor P, C-terminal LDP97_01375 PF00478 IMP dehydrogenase / GMP reductase domain LDP97_01385 PF08521 Two-component sensor kinase N-terminal LDP97_01385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_01385 PF00512 His Kinase A (phospho-acceptor) domain LDP97_01390 PF00072 Response regulator receiver domain LDP97_01390 PF00486 Transcriptional regulatory protein, C terminal LDP97_01410 PF00501 AMP-binding enzyme LDP97_01425 PF06224 Winged helix DNA-binding domain LDP97_01445 PF02313 Fumarate reductase subunit D LDP97_01450 PF02300 Fumarate reductase subunit C LDP97_01455 PF13085 2Fe-2S iron-sulfur cluster binding domain LDP97_01455 PF13183 4Fe-4S dicluster domain LDP97_01460 PF02910 Fumarate reductase flavoprotein C-term LDP97_01460 PF00890 FAD binding domain LDP97_01465 PF00672 HAMP domain LDP97_01465 PF02743 Cache domain LDP97_01465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_01470 PF03009 Glycerophosphoryl diester phosphodiesterase family LDP97_01475 PF12795 Mechanosensitive ion channel porin domain LDP97_01475 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDP97_01475 PF00924 Mechanosensitive ion channel LDP97_01485 PF01476 LysM domain LDP97_01485 PF08525 Opacity-associated protein A N-terminal motif LDP97_01485 PF01551 Peptidase family M23 LDP97_01500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_01500 PF03466 LysR substrate binding domain LDP97_01515 PF00672 HAMP domain LDP97_01515 PF02743 Cache domain LDP97_01515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_01520 PF03466 LysR substrate binding domain LDP97_01525 PF17092 Penicillin-binding protein OB-like domain LDP97_01525 PF00912 Transglycosylase LDP97_01525 PF00905 Penicillin binding protein transpeptidase domain LDP97_01530 PF11104 Type IV pilus assembly protein PilM; LDP97_01540 PF04350 Pilus assembly protein, PilO LDP97_01550 PF00263 Bacterial type II and III secretion system protein LDP97_01550 PF11741 AMIN domain LDP97_01550 PF03958 Bacterial type II/III secretion system short domain LDP97_01550 PF07660 Secretin and TonB N terminus short domain LDP97_01555 PF01202 Shikimate kinase LDP97_01560 PF01761 3-dehydroquinate synthase LDP97_01570 PF02086 D12 class N6 adenine-specific DNA methyltransferase LDP97_01575 PF00834 Ribulose-phosphate 3 epimerase family LDP97_01580 PF13419 Haloacid dehalogenase-like hydrolase LDP97_01585 PF00579 tRNA synthetases class I (W and Y) LDP97_01595 PF00117 Glutamine amidotransferase class-I LDP97_01600 PF00202 Aminotransferase class-III LDP97_01605 PF04958 Arginine N-succinyltransferase beta subunit LDP97_01610 PF00171 Aldehyde dehydrogenase family LDP97_01620 PF13419 Haloacid dehalogenase-like hydrolase LDP97_01625 PF07690 Major Facilitator Superfamily LDP97_01630 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LDP97_01630 PF10371 Domain of unknown function LDP97_01630 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LDP97_01630 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LDP97_01630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDP97_01640 PF00128 Alpha amylase, catalytic domain LDP97_01640 PF16657 Maltogenic Amylase, C-terminal domain LDP97_01650 PF04266 ASCH domain LDP97_01660 PF01048 Phosphorylase superfamily LDP97_01665 PF04973 Nicotinamide mononucleotide transporter LDP97_01670 PF03600 Citrate transporter LDP97_01670 PF02080 TrkA-C domain LDP97_01725 PF06071 Protein of unknown function (DUF933) LDP97_01725 PF01926 50S ribosome-binding GTPase LDP97_01730 PF01195 Peptidyl-tRNA hydrolase LDP97_01735 PF00149 Calcineurin-like phosphoesterase LDP97_01735 PF02872 5'-nucleotidase, C-terminal domain LDP97_01740 PF14572 Phosphoribosyl synthetase-associated domain LDP97_01740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LDP97_01750 PF00288 GHMP kinases N terminal domain LDP97_01750 PF08544 GHMP kinases C terminal LDP97_01755 PF03550 Outer membrane lipoprotein LolB LDP97_01760 PF01488 Shikimate / quinate 5-dehydrogenase LDP97_01760 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LDP97_01760 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LDP97_01765 PF03462 PCRF domain LDP97_01765 PF00472 RF-1 domain LDP97_01770 PF17827 PrmC N-terminal domain LDP97_01770 PF13847 Methyltransferase domain LDP97_01780 PF13369 Transglutaminase-like superfamily LDP97_01785 PF00793 DAHP synthetase I family LDP97_01790 PF00375 Sodium:dicarboxylate symporter family LDP97_01795 PF01228 Glycine radical LDP97_01800 PF03167 Uracil DNA glycosylase superfamily LDP97_01815 PF00923 Transaldolase/Fructose-6-phosphate aldolase LDP97_01820 PF01235 Sodium:alanine symporter family LDP97_01825 PF13559 Domain of unknown function (DUF4129) LDP97_01825 PF11992 Domain of unknown function (DUF3488) LDP97_01825 PF01841 Transglutaminase-like superfamily LDP97_01835 PF17863 AAA lid domain LDP97_01835 PF07726 ATPase family associated with various cellular activities (AAA) LDP97_01840 PF00144 Beta-lactamase LDP97_01845 PF00854 POT family LDP97_01850 PF03652 Holliday junction resolvase LDP97_01855 PF02622 Uncharacterized ACR, COG1678 LDP97_01860 PF00672 HAMP domain LDP97_01860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_01860 PF12729 Four helix bundle sensory module for signal transduction LDP97_01865 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LDP97_01865 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LDP97_01870 PF04452 RNA methyltransferase LDP97_01875 PF04231 Endonuclease I LDP97_01880 PF10263 SprT-like family LDP97_01880 PF17283 SprT-like zinc ribbon domain LDP97_01885 PF00438 S-adenosylmethionine synthetase, N-terminal domain LDP97_01885 PF02773 S-adenosylmethionine synthetase, C-terminal domain LDP97_01885 PF02772 S-adenosylmethionine synthetase, central domain LDP97_01890 PF02779 Transketolase, pyrimidine binding domain LDP97_01890 PF02780 Transketolase, C-terminal domain LDP97_01890 PF00456 Transketolase, thiamine diphosphate binding domain LDP97_01895 PF00486 Transcriptional regulatory protein, C terminal LDP97_01935 PF12792 CSS motif domain associated with EAL LDP97_01935 PF00563 EAL domain LDP97_01940 PF12697 Alpha/beta hydrolase family LDP97_01945 PF01042 Endoribonuclease L-PSP LDP97_01950 PF01965 DJ-1/PfpI family LDP97_01955 PF03702 Anhydro-N-acetylmuramic acid kinase LDP97_01960 PF01476 LysM domain LDP97_01960 PF08525 Opacity-associated protein A N-terminal motif LDP97_01960 PF01551 Peptidase family M23 LDP97_01965 PF00579 tRNA synthetases class I (W and Y) LDP97_01970 PF01204 Trehalase LDP97_01980 PF01161 Phosphatidylethanolamine-binding protein LDP97_01985 PF00709 Adenylosuccinate synthetase LDP97_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_01990 PF03466 LysR substrate binding domain LDP97_02000 PF00155 Aminotransferase class I and II LDP97_02005 PF07690 Major Facilitator Superfamily LDP97_02010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_02010 PF03466 LysR substrate binding domain LDP97_02015 PF00106 short chain dehydrogenase LDP97_02020 PF01343 Peptidase family S49 LDP97_02020 PF08496 Peptidase family S49 N-terminal LDP97_02025 PF04996 Succinylarginine dihydrolase LDP97_02030 PF01751 Toprim domain LDP97_02030 PF01131 DNA topoisomerase LDP97_02030 PF01396 Topoisomerase DNA binding C4 zinc finger LDP97_02030 PF08272 Topoisomerase I zinc-ribbon-like LDP97_02045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_02045 PF08447 PAS fold LDP97_02050 PF02838 Glycosyl hydrolase family 20, domain 2 LDP97_02050 PF00728 Glycosyl hydrolase family 20, catalytic domain LDP97_02055 PF01869 BadF/BadG/BcrA/BcrD ATPase family LDP97_02065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_02065 PF00005 ABC transporter LDP97_02070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_02070 PF00005 ABC transporter LDP97_02075 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_02075 PF12911 N-terminal TM domain of oligopeptide transport permease C LDP97_02080 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_02085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_02090 PF00512 His Kinase A (phospho-acceptor) domain LDP97_02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_02090 PF09308 LuxQ, periplasmic LDP97_02090 PF00072 Response regulator receiver domain LDP97_02110 PF10725 Protein of unknown function (DUF2517) LDP97_02120 PF05114 Protein of unknown function (DUF692) LDP97_02140 PF13426 PAS domain LDP97_02140 PF08447 PAS fold LDP97_02140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_02155 PF04632 Fusaric acid resistance protein family LDP97_02160 PF03453 MoeA N-terminal region (domain I and II) LDP97_02160 PF03454 MoeA C-terminal region (domain IV) LDP97_02160 PF00994 Probable molybdopterin binding domain LDP97_02165 PF12804 MobA-like NTP transferase domain LDP97_02170 PF00005 ABC transporter LDP97_02175 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_02180 PF12849 PBP superfamily domain LDP97_02185 PF00072 Response regulator receiver domain LDP97_02185 PF02954 Bacterial regulatory protein, Fis family LDP97_02185 PF00158 Sigma-54 interaction domain LDP97_02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_02190 PF00512 His Kinase A (phospho-acceptor) domain LDP97_02190 PF00989 PAS fold LDP97_02195 PF12727 PBP superfamily domain LDP97_02195 PF12728 Helix-turn-helix domain LDP97_02200 PF02634 FdhD/NarQ family LDP97_02240 PF12838 4Fe-4S dicluster domain LDP97_02240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDP97_02240 PF00384 Molybdopterin oxidoreductase LDP97_02240 PF01568 Molydopterin dinucleotide binding domain LDP97_02240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDP97_02240 PF01568 Molydopterin dinucleotide binding domain LDP97_02240 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LDP97_02240 PF00384 Molybdopterin oxidoreductase LDP97_02240 PF12838 4Fe-4S dicluster domain LDP97_02240 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LDP97_02245 PF13247 4Fe-4S dicluster domain LDP97_02255 PF00072 Response regulator receiver domain LDP97_02260 PF03949 Malic enzyme, NAD binding domain LDP97_02260 PF00390 Malic enzyme, N-terminal domain LDP97_02265 PF16998 17 kDa outer membrane surface antigen LDP97_02265 PF05433 Glycine zipper 2TM domain LDP97_02275 PF00860 Permease family LDP97_02280 PF10282 Lactonase, 7-bladed beta-propeller LDP97_02290 PF00924 Mechanosensitive ion channel LDP97_02290 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDP97_02290 PF12795 Mechanosensitive ion channel porin domain LDP97_02295 PF00224 Pyruvate kinase, barrel domain LDP97_02295 PF02887 Pyruvate kinase, alpha/beta domain LDP97_02305 PF04389 Peptidase family M28 LDP97_02305 PF04151 Bacterial pre-peptidase C-terminal domain LDP97_02310 PF02254 TrkA-N domain LDP97_02310 PF00999 Sodium/hydrogen exchanger family LDP97_02320 PF04381 Putative exonuclease, RdgC LDP97_02330 PF00149 Calcineurin-like phosphoesterase LDP97_02330 PF12320 Type 5 capsule protein repressor C-terminal domain LDP97_02335 PF13476 AAA domain LDP97_02350 PF01292 Prokaryotic cytochrome b561 LDP97_02360 PF00990 Diguanylate cyclase, GGDEF domain LDP97_02365 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDP97_02370 PF05524 PEP-utilising enzyme, N-terminal LDP97_02370 PF02896 PEP-utilising enzyme, TIM barrel domain LDP97_02370 PF00391 PEP-utilising enzyme, mobile domain LDP97_02375 PF00381 PTS HPr component phosphorylation site LDP97_02380 PF00291 Pyridoxal-phosphate dependent enzyme LDP97_02385 PF02861 Clp amino terminal domain, pathogenicity island component LDP97_02385 PF17871 AAA lid domain LDP97_02385 PF00004 ATPase family associated with various cellular activities (AAA) LDP97_02385 PF07724 AAA domain (Cdc48 subfamily) LDP97_02385 PF10431 C-terminal, D2-small domain, of ClpB protein LDP97_02395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDP97_02395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDP97_02400 PF01980 tRNA-methyltransferase O LDP97_02400 PF18389 TrmO C-terminal domain LDP97_02420 PF00664 ABC transporter transmembrane region LDP97_02420 PF00005 ABC transporter LDP97_02425 PF00664 ABC transporter transmembrane region LDP97_02425 PF00005 ABC transporter LDP97_02440 PF00486 Transcriptional regulatory protein, C terminal LDP97_02440 PF00072 Response regulator receiver domain LDP97_02450 PF03737 Aldolase/RraA LDP97_02465 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LDP97_02470 PF00588 SpoU rRNA Methylase family LDP97_02475 PF03447 Homoserine dehydrogenase, NAD binding domain LDP97_02475 PF00742 Homoserine dehydrogenase LDP97_02475 PF13840 ACT domain LDP97_02475 PF01842 ACT domain LDP97_02475 PF00696 Amino acid kinase family LDP97_02480 PF00288 GHMP kinases N terminal domain LDP97_02480 PF08544 GHMP kinases C terminal LDP97_02485 PF00291 Pyridoxal-phosphate dependent enzyme LDP97_02485 PF14821 Threonine synthase N terminus LDP97_02490 PF13474 SnoaL-like domain LDP97_02505 PF00005 ABC transporter LDP97_02505 PF12848 ABC transporter LDP97_02515 PF02463 RecF/RecN/SMC N terminal domain LDP97_02525 PF01048 Phosphorylase superfamily LDP97_02540 PF00072 Response regulator receiver domain LDP97_02540 PF00989 PAS fold LDP97_02540 PF01627 Hpt domain LDP97_02540 PF00512 His Kinase A (phospho-acceptor) domain LDP97_02540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_02540 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_02545 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LDP97_02550 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDP97_02550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDP97_02555 PF02690 Na+/Pi-cotransporter LDP97_02565 PF13520 Amino acid permease LDP97_02575 PF00324 Amino acid permease LDP97_02580 PF00202 Aminotransferase class-III LDP97_02585 PF00171 Aldehyde dehydrogenase family LDP97_02590 PF07883 Cupin domain LDP97_02590 PF01381 Helix-turn-helix LDP97_02595 PF01266 FAD dependent oxidoreductase LDP97_02610 PF00816 H-NS histone family LDP97_02615 PF00793 DAHP synthetase I family LDP97_02620 PF08021 Siderophore-interacting FAD-binding domain LDP97_02620 PF04954 Siderophore-interacting protein LDP97_02625 PF02321 Outer membrane efflux protein LDP97_02630 PF12704 MacB-like periplasmic core domain LDP97_02630 PF00005 ABC transporter LDP97_02630 PF02687 FtsX-like permease family LDP97_02635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_02645 PF01368 DHH family LDP97_02645 PF02833 DHHA2 domain LDP97_02650 PF02463 RecF/RecN/SMC N terminal domain LDP97_02655 PF01513 ATP-NAD kinase LDP97_02660 PF01025 GrpE LDP97_02665 PF00012 Hsp70 protein LDP97_02670 PF00226 DnaJ domain LDP97_02670 PF00684 DnaJ central domain LDP97_02670 PF01556 DnaJ C terminal domain LDP97_02675 PF02264 LamB porin LDP97_02675 PF11471 Maltoporin periplasmic N-terminal extension LDP97_02680 PF00294 pfkB family carbohydrate kinase LDP97_02685 PF00367 phosphotransferase system, EIIB LDP97_02685 PF02378 Phosphotransferase system, EIIC LDP97_02690 PF08244 Glycosyl hydrolases family 32 C terminal LDP97_02690 PF00251 Glycosyl hydrolases family 32 N-terminal domain LDP97_02695 PF00356 Bacterial regulatory proteins, lacI family LDP97_02695 PF13407 Periplasmic binding protein domain LDP97_02700 PF02308 MgtC family LDP97_02715 PF01022 Bacterial regulatory protein, arsR family LDP97_02720 PF04143 Sulphur transport LDP97_02735 PF00873 AcrB/AcrD/AcrF family LDP97_02740 PF00563 EAL domain LDP97_02740 PF03707 Bacterial signalling protein N terminal repeat LDP97_02740 PF00990 Diguanylate cyclase, GGDEF domain LDP97_02745 PF03099 Biotin/lipoate A/B protein ligase family LDP97_02745 PF10437 Bacterial lipoate protein ligase C-terminus LDP97_02765 PF00873 AcrB/AcrD/AcrF family LDP97_02770 PF00529 HlyD membrane-fusion protein of T1SS LDP97_02770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_02780 PF00873 AcrB/AcrD/AcrF family LDP97_02785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_02790 PF03372 Endonuclease/Exonuclease/phosphatase family LDP97_02805 PF07690 Major Facilitator Superfamily LDP97_02810 PF02424 ApbE family LDP97_02815 PF00127 Copper binding proteins, plastocyanin/azurin family LDP97_02830 PF01156 Inosine-uridine preferring nucleoside hydrolase LDP97_02840 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LDP97_02840 PF00034 Cytochrome c LDP97_02850 PF06481 COX Aromatic Rich Motif LDP97_02850 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LDP97_02855 PF00115 Cytochrome C and Quinol oxidase polypeptide I LDP97_02860 PF00510 Cytochrome c oxidase subunit III LDP97_02865 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LDP97_02870 PF01040 UbiA prenyltransferase family LDP97_02875 PF07690 Major Facilitator Superfamily LDP97_02885 PF00072 Response regulator receiver domain LDP97_02885 PF00672 HAMP domain LDP97_02885 PF01627 Hpt domain LDP97_02885 PF00512 His Kinase A (phospho-acceptor) domain LDP97_02885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_02890 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDP97_02900 PF00072 Response regulator receiver domain LDP97_02900 PF00486 Transcriptional regulatory protein, C terminal LDP97_02905 PF03264 NapC/NirT cytochrome c family, N-terminal region LDP97_02910 PF00384 Molybdopterin oxidoreductase LDP97_02910 PF18364 Molybdopterin oxidoreductase N-terminal domain LDP97_02910 PF01568 Molydopterin dinucleotide binding domain LDP97_02915 PF02613 Nitrate reductase delta subunit LDP97_02955 PF04002 RadC-like JAB domain LDP97_02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_02995 PF03466 LysR substrate binding domain LDP97_03010 PF00696 Amino acid kinase family LDP97_03015 PF06545 Protein of unknown function (DUF1116) LDP97_03020 PF00549 CoA-ligase LDP97_03020 PF02629 CoA binding domain LDP97_03025 PF00857 Isochorismatase family LDP97_03045 PF05930 Prophage CP4-57 regulatory protein (AlpA) LDP97_03065 PF01773 Na+ dependent nucleoside transporter N-terminus LDP97_03065 PF07662 Na+ dependent nucleoside transporter C-terminus LDP97_03065 PF07670 Nucleoside recognition LDP97_03105 PF00290 Tryptophan synthase alpha chain LDP97_03110 PF00291 Pyridoxal-phosphate dependent enzyme LDP97_03115 PF00218 Indole-3-glycerol phosphate synthase LDP97_03115 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LDP97_03120 PF00591 Glycosyl transferase family, a/b domain LDP97_03120 PF02885 Glycosyl transferase family, helical bundle domain LDP97_03125 PF02885 Glycosyl transferase family, helical bundle domain LDP97_03125 PF00117 Glutamine amidotransferase class-I LDP97_03125 PF00591 Glycosyl transferase family, a/b domain LDP97_03130 PF00425 chorismate binding enzyme LDP97_03130 PF04715 Anthranilate synthase component I, N terminal region LDP97_03135 PF02811 PHP domain LDP97_03140 PF01300 Telomere recombination LDP97_03145 PF02616 Segregation and condensation protein ScpA LDP97_03150 PF04079 Segregation and condensation complex subunit ScpB LDP97_03155 PF00849 RNA pseudouridylate synthase LDP97_03155 PF01479 S4 domain LDP97_03175 PF00440 Bacterial regulatory proteins, tetR family LDP97_03175 PF08361 MAATS-type transcriptional repressor, C-terminal region LDP97_03180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_03180 PF00529 HlyD membrane-fusion protein of T1SS LDP97_03185 PF00873 AcrB/AcrD/AcrF family LDP97_03190 PF16363 GDP-mannose 4,6 dehydratase LDP97_03195 PF00483 Nucleotidyl transferase LDP97_03200 PF05523 WxcM-like, C-terminal LDP97_03205 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal LDP97_03205 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_03205 PF14602 Hexapeptide repeat of succinyl-transferase LDP97_03210 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDP97_03215 PF01943 Polysaccharide biosynthesis protein LDP97_03235 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_03235 PF12464 Maltose acetyltransferase LDP97_03250 PF13439 Glycosyltransferase Family 4 LDP97_03250 PF00534 Glycosyl transferases group 1 LDP97_03255 PF16363 GDP-mannose 4,6 dehydratase LDP97_03260 PF01370 NAD dependent epimerase/dehydratase family LDP97_03265 PF00293 NUDIX domain LDP97_03270 PF01050 Mannose-6-phosphate isomerase LDP97_03270 PF00483 Nucleotidyl transferase LDP97_03275 PF00535 Glycosyl transferase family 2 LDP97_03280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDP97_03280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDP97_03280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDP97_03280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDP97_03285 PF00953 Glycosyl transferase family 4 LDP97_03290 PF04321 RmlD substrate binding domain LDP97_03295 PF00483 Nucleotidyl transferase LDP97_03300 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LDP97_03305 PF02706 Chain length determinant protein LDP97_03335 PF06082 Exopolysaccharide biosynthesis protein YbjH LDP97_03345 PF04337 Protein of unknown function, DUF480 LDP97_03350 PF04434 SWIM zinc finger LDP97_03350 PF00271 Helicase conserved C-terminal domain LDP97_03350 PF00176 SNF2 family N-terminal domain LDP97_03355 PF05472 DNA replication terminus site-binding protein (Ter protein) LDP97_03365 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LDP97_03370 PF00676 Dehydrogenase E1 component LDP97_03375 PF02779 Transketolase, pyrimidine binding domain LDP97_03375 PF02780 Transketolase, C-terminal domain LDP97_03380 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDP97_03380 PF00364 Biotin-requiring enzyme LDP97_03380 PF02817 e3 binding domain LDP97_03385 PF00313 'Cold-shock' DNA-binding domain LDP97_03410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_03415 PF00892 EamA-like transporter family LDP97_03420 PF08220 DeoR-like helix-turn-helix domain LDP97_03420 PF00455 DeoR C terminal sensor domain LDP97_03425 PF01228 Glycine radical LDP97_03425 PF02901 Pyruvate formate lyase-like LDP97_03430 PF04055 Radical SAM superfamily LDP97_03435 PF00923 Transaldolase/Fructose-6-phosphate aldolase LDP97_03445 PF01966 HD domain LDP97_03445 PF11871 Domain of unknown function (DUF3391) LDP97_03450 PF01479 S4 domain LDP97_03450 PF00849 RNA pseudouridylate synthase LDP97_03460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_03465 PF12850 Calcineurin-like phosphoesterase superfamily domain LDP97_03480 PF13144 Chaperone for flagella basal body P-ring formation LDP97_03485 PF01584 CheW-like domain LDP97_03485 PF00072 Response regulator receiver domain LDP97_03490 PF03705 CheR methyltransferase, all-alpha domain LDP97_03490 PF01739 CheR methyltransferase, SAM binding domain LDP97_03495 PF00460 Flagella basal body rod protein LDP97_03500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDP97_03500 PF00460 Flagella basal body rod protein LDP97_03510 PF07559 Flagellar basal body protein FlaE LDP97_03510 PF00460 Flagella basal body rod protein LDP97_03510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDP97_03515 PF00460 Flagella basal body rod protein LDP97_03515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDP97_03520 PF00460 Flagella basal body rod protein LDP97_03520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDP97_03525 PF02107 Flagellar L-ring protein LDP97_03530 PF02119 Flagellar P-ring protein LDP97_03535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LDP97_03535 PF10135 Rod binding protein LDP97_03540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDP97_03540 PF00460 Flagella basal body rod protein LDP97_03545 PF00669 Bacterial flagellin N-terminal helical region LDP97_03550 PF03448 MgtE intracellular N domain LDP97_03550 PF01769 Divalent cation transporter LDP97_03550 PF00571 CBS domain LDP97_03555 PF02541 Ppx/GppA phosphatase family LDP97_03560 PF13089 Polyphosphate kinase N-terminal domain LDP97_03560 PF02503 Polyphosphate kinase middle domain LDP97_03560 PF13090 Polyphosphate kinase C-terminal domain 2 LDP97_03560 PF17941 Polyphosphate kinase C-terminal domain 1 LDP97_03565 PF01842 ACT domain LDP97_03575 PF00158 Sigma-54 interaction domain LDP97_03575 PF06490 Flagellar regulatory protein FleQ LDP97_03575 PF02954 Bacterial regulatory protein, Fis family LDP97_03580 PF13188 PAS domain LDP97_03580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_03580 PF00512 His Kinase A (phospho-acceptor) domain LDP97_03585 PF00158 Sigma-54 interaction domain LDP97_03585 PF00072 Response regulator receiver domain LDP97_03585 PF02954 Bacterial regulatory protein, Fis family LDP97_03590 PF01784 NIF3 (NGG1p interacting factor 3) LDP97_03595 PF00551 Formyl transferase LDP97_03600 PF00586 AIR synthase related protein, N-terminal domain LDP97_03600 PF02769 AIR synthase related protein, C-terminal domain LDP97_03615 PF00308 Bacterial dnaA protein LDP97_03620 PF00463 Isocitrate lyase family LDP97_03625 PF01274 Malate synthase LDP97_03640 PF14437 MafB19-like deaminase LDP97_03645 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_03650 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_03655 PF00005 ABC transporter LDP97_03660 PF01895 PhoU domain LDP97_03665 PF01595 Cyclin M transmembrane N-terminal domain LDP97_03665 PF03471 Transporter associated domain LDP97_03665 PF00571 CBS domain LDP97_03675 PF02574 Homocysteine S-methyltransferase LDP97_03675 PF02965 Vitamin B12 dependent methionine synthase, activation domain LDP97_03675 PF00809 Pterin binding enzyme LDP97_03675 PF02310 B12 binding domain LDP97_03675 PF02607 B12 binding domain LDP97_03680 PF13520 Amino acid permease LDP97_03685 PF04116 Fatty acid hydroxylase superfamily LDP97_03695 PF00005 ABC transporter LDP97_03700 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_03705 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_03710 PF00990 Diguanylate cyclase, GGDEF domain LDP97_03715 PF07690 Major Facilitator Superfamily LDP97_03720 PF07730 Histidine kinase LDP97_03720 PF05231 MASE1 LDP97_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_03725 PF00072 Response regulator receiver domain LDP97_03725 PF00196 Bacterial regulatory proteins, luxR family LDP97_03730 PF14760 Rnk N-terminus LDP97_03730 PF01272 Transcription elongation factor, GreA/GreB, C-term LDP97_03745 PF00245 Alkaline phosphatase LDP97_03750 PF00245 Alkaline phosphatase LDP97_03755 PF01926 50S ribosome-binding GTPase LDP97_03760 PF07690 Major Facilitator Superfamily LDP97_03765 PF00850 Histone deacetylase domain LDP97_03775 PF06733 DEAD_2 LDP97_03775 PF13307 Helicase C-terminal domain LDP97_03780 PF13609 Gram-negative porin LDP97_03790 PF00155 Aminotransferase class I and II LDP97_03795 PF05872 Bacterial protein of unknown function (DUF853) LDP97_03880 PF00155 Aminotransferase class I and II LDP97_03880 PF00392 Bacterial regulatory proteins, gntR family LDP97_03885 PF00701 Dihydrodipicolinate synthetase family LDP97_03895 PF01037 Lrp/AsnC ligand binding domain LDP97_03935 PF09722 Protein of unknown function (DUF2384) LDP97_03950 PF00816 H-NS histone family LDP97_03995 PF00664 ABC transporter transmembrane region LDP97_03995 PF00005 ABC transporter LDP97_04000 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LDP97_04005 PF03966 Trm112p-like protein LDP97_04010 PF02348 Cytidylyltransferase LDP97_04015 PF00072 Response regulator receiver domain LDP97_04015 PF00196 Bacterial regulatory proteins, luxR family LDP97_04020 PF08459 UvrC Helix-hairpin-helix N-terminal LDP97_04020 PF01541 GIY-YIG catalytic domain LDP97_04020 PF02151 UvrB/uvrC motif LDP97_04025 PF01066 CDP-alcohol phosphatidyltransferase LDP97_04045 PF00589 Phage integrase family LDP97_04045 PF13356 Arm DNA-binding domain LDP97_04085 PF00171 Aldehyde dehydrogenase family LDP97_04095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDP97_04095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDP97_04095 PF00205 Thiamine pyrophosphate enzyme, central domain LDP97_04105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDP97_04105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDP97_04110 PF13407 Periplasmic binding protein domain LDP97_04115 PF00005 ABC transporter LDP97_04120 PF02653 Branched-chain amino acid transport system / permease component LDP97_04125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDP97_04125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDP97_04130 PF00294 pfkB family carbohydrate kinase LDP97_04135 PF01261 Xylose isomerase-like TIM barrel LDP97_04140 PF04962 KduI/IolB family LDP97_04195 PF01757 Acyltransferase family LDP97_04210 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB LDP97_04215 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LDP97_04235 PF00037 4Fe-4S binding domain LDP97_04235 PF13247 4Fe-4S dicluster domain LDP97_04240 PF03916 Polysulphide reductase, NrfD LDP97_04245 PF00149 Calcineurin-like phosphoesterase LDP97_04255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDP97_04260 PF09190 DALR domain LDP97_04260 PF01406 tRNA synthetases class I (C) catalytic domain LDP97_04280 PF13185 GAF domain LDP97_04280 PF00990 Diguanylate cyclase, GGDEF domain LDP97_04310 PF01169 Uncharacterized protein family UPF0016 LDP97_04315 PF01253 Translation initiation factor SUI1 LDP97_04325 PF07664 Ferrous iron transport protein B C terminus LDP97_04325 PF02421 Ferrous iron transport protein B LDP97_04325 PF07670 Nucleoside recognition LDP97_04340 PF00483 Nucleotidyl transferase LDP97_04345 PF00437 Type II/IV secretion system protein LDP97_04355 PF00989 PAS fold LDP97_04355 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_04355 PF00072 Response regulator receiver domain LDP97_04355 PF01627 Hpt domain LDP97_04355 PF00512 His Kinase A (phospho-acceptor) domain LDP97_04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_04360 PF01032 FecCD transport family LDP97_04365 PF00005 ABC transporter LDP97_04370 PF00583 Acetyltransferase (GNAT) family LDP97_04375 PF00793 DAHP synthetase I family LDP97_04380 PF01219 Prokaryotic diacylglycerol kinase LDP97_04385 PF01842 ACT domain LDP97_04385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDP97_04385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDP97_04390 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LDP97_04395 PF01812 5-formyltetrahydrofolate cyclo-ligase family LDP97_04410 PF01113 Dihydrodipicolinate reductase, N-terminus LDP97_04410 PF05173 Dihydrodipicolinate reductase, C-terminus LDP97_04415 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LDP97_04415 PF00117 Glutamine amidotransferase class-I LDP97_04420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDP97_04420 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LDP97_04420 PF02142 MGS-like domain LDP97_04425 PF00682 HMGL-like LDP97_04425 PF08502 LeuA allosteric (dimerisation) domain LDP97_04430 PF07759 Protein of unknown function (DUF1615) LDP97_04455 PF13302 Acetyltransferase (GNAT) domain LDP97_04460 PF00271 Helicase conserved C-terminal domain LDP97_04460 PF00270 DEAD/DEAH box helicase LDP97_04470 PF14521 Lysine-specific metallo-endopeptidase LDP97_04485 PF09278 MerR, DNA binding LDP97_04485 PF00376 MerR family regulatory protein LDP97_04500 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_04505 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_04510 PF00005 ABC transporter LDP97_04515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LDP97_04515 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_04520 PF00310 Glutamine amidotransferases class-II LDP97_04520 PF04898 Glutamate synthase central domain LDP97_04520 PF01645 Conserved region in glutamate synthase LDP97_04520 PF01493 GXGXG motif LDP97_04525 PF04055 Radical SAM superfamily LDP97_04525 PF16199 Radical_SAM C-terminal domain LDP97_04530 PF03412 Peptidase C39 family LDP97_04530 PF00664 ABC transporter transmembrane region LDP97_04530 PF00005 ABC transporter LDP97_04575 PF00324 Amino acid permease LDP97_04585 PF03618 Kinase/pyrophosphorylase LDP97_04590 PF02896 PEP-utilising enzyme, TIM barrel domain LDP97_04590 PF00391 PEP-utilising enzyme, mobile domain LDP97_04590 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LDP97_04600 PF00933 Glycosyl hydrolase family 3 N terminal domain LDP97_04600 PF14310 Fibronectin type III-like domain LDP97_04600 PF01915 Glycosyl hydrolase family 3 C-terminal domain LDP97_04610 PF01483 Proprotein convertase P-domain LDP97_04610 PF00082 Subtilase family LDP97_04625 PF01292 Prokaryotic cytochrome b561 LDP97_04635 PF07969 Amidohydrolase family LDP97_04640 PF03180 NLPA lipoprotein LDP97_04645 PF01569 PAP2 superfamily LDP97_04650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDP97_04650 PF11890 Domain of unknown function (DUF3410) LDP97_04650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDP97_04655 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDP97_04655 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDP97_04665 PF01416 tRNA pseudouridine synthase LDP97_04670 PF01039 Carboxyl transferase domain LDP97_04670 PF17848 Acetyl-coA carboxylase zinc finger domain LDP97_04675 PF02875 Mur ligase family, glutamate ligase domain LDP97_04675 PF08245 Mur ligase middle domain LDP97_04680 PF05036 Sporulation related domain LDP97_04685 PF04358 DsrC like protein LDP97_04690 PF12805 FUSC-like inner membrane protein yccS LDP97_04695 PF01027 Inhibitor of apoptosis-promoting Bax1 LDP97_04705 PF00069 Protein kinase domain LDP97_04760 PF04002 RadC-like JAB domain LDP97_04810 PF00211 Adenylate and Guanylate cyclase catalytic domain LDP97_04810 PF00069 Protein kinase domain LDP97_04820 PF12705 PD-(D/E)XK nuclease superfamily LDP97_04820 PF00580 UvrD/REP helicase N-terminal domain LDP97_04820 PF13361 UvrD-like helicase C-terminal domain LDP97_04825 PF02463 RecF/RecN/SMC N terminal domain LDP97_04825 PF06470 SMC proteins Flexible Hinge Domain LDP97_04835 PF05930 Prophage CP4-57 regulatory protein (AlpA) LDP97_04845 PF05638 Type VI secretion system effector, Hcp LDP97_04855 PF04717 Type VI secretion system, phage-baseplate injector LDP97_04885 PF00005 ABC transporter LDP97_04885 PF03459 TOBE domain LDP97_04890 PF13356 Arm DNA-binding domain LDP97_04890 PF00589 Phage integrase family LDP97_04905 PF08019 Phosphoethanolamine transferase EptA/EptB LDP97_04905 PF00884 Sulfatase LDP97_04915 PF09924 Uncharacterised conserved protein (DUF2156) LDP97_04915 PF03706 Lysylphosphatidylglycerol synthase TM region LDP97_04925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_04925 PF08447 PAS fold LDP97_04930 PF00563 EAL domain LDP97_04930 PF00990 Diguanylate cyclase, GGDEF domain LDP97_04930 PF13426 PAS domain LDP97_04935 PF00849 RNA pseudouridylate synthase LDP97_04945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDP97_04950 PF04209 homogentisate 1,2-dioxygenase LDP97_04960 PF14497 Glutathione S-transferase, C-terminal domain LDP97_04960 PF02798 Glutathione S-transferase, N-terminal domain LDP97_04965 PF00043 Glutathione S-transferase, C-terminal domain LDP97_04965 PF13417 Glutathione S-transferase, N-terminal domain LDP97_04975 PF00733 Asparagine synthase LDP97_04975 PF13537 Glutamine amidotransferase domain LDP97_04985 PF00999 Sodium/hydrogen exchanger family LDP97_04985 PF02254 TrkA-N domain LDP97_04990 PF13344 Haloacid dehalogenase-like hydrolase LDP97_04995 PF00962 Adenosine/AMP deaminase LDP97_05000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDP97_05005 PF03471 Transporter associated domain LDP97_05005 PF03741 Integral membrane protein TerC family LDP97_05015 PF02913 FAD linked oxidases, C-terminal domain LDP97_05015 PF01565 FAD binding domain LDP97_05015 PF13183 4Fe-4S dicluster domain LDP97_05025 PF03061 Thioesterase superfamily LDP97_05030 PF03880 DbpA RNA binding domain LDP97_05030 PF00270 DEAD/DEAH box helicase LDP97_05030 PF00271 Helicase conserved C-terminal domain LDP97_05035 PF03553 Na+/H+ antiporter family LDP97_05035 PF13726 Na+-H+ antiporter family LDP97_05040 PF00929 Exonuclease LDP97_05045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_05045 PF00672 HAMP domain LDP97_05045 PF12729 Four helix bundle sensory module for signal transduction LDP97_05050 PF18393 MotY N-terminal domain LDP97_05050 PF00691 OmpA family LDP97_05055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDP97_05060 PF00633 Helix-hairpin-helix motif LDP97_05060 PF00730 HhH-GPD superfamily base excision DNA repair protein LDP97_05060 PF10576 Iron-sulfur binding domain of endonuclease III LDP97_05065 PF02508 Rnf-Nqr subunit, membrane protein LDP97_05070 PF04205 FMN-binding domain LDP97_05075 PF03116 NQR2, RnfD, RnfE family LDP97_05080 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LDP97_05080 PF12838 4Fe-4S dicluster domain LDP97_05080 PF13375 RnfC Barrel sandwich hybrid domain LDP97_05080 PF10531 SLBB domain LDP97_05085 PF04060 Putative Fe-S cluster LDP97_05090 PF02508 Rnf-Nqr subunit, membrane protein LDP97_05095 PF00892 EamA-like transporter family LDP97_05115 PF07055 Enoyl reductase FAD binding domain LDP97_05115 PF12241 Trans-2-enoyl-CoA reductase catalytic region LDP97_05115 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LDP97_05120 PF03606 C4-dicarboxylate anaerobic carrier LDP97_05125 PF00155 Aminotransferase class I and II LDP97_05135 PF00462 Glutaredoxin LDP97_05140 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LDP97_05145 PF00271 Helicase conserved C-terminal domain LDP97_05145 PF04851 Type III restriction enzyme, res subunit LDP97_05150 PF00529 HlyD membrane-fusion protein of T1SS LDP97_05150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_05155 PF11742 Protein of unknown function (DUF3302) LDP97_05160 PF02554 Carbon starvation protein CstA LDP97_05165 PF04397 LytTr DNA-binding domain LDP97_05165 PF00072 Response regulator receiver domain LDP97_05170 PF07694 5TMR of 5TMR-LYT LDP97_05170 PF06580 Histidine kinase LDP97_05175 PF01966 HD domain LDP97_05180 PF00465 Iron-containing alcohol dehydrogenase LDP97_05180 PF00171 Aldehyde dehydrogenase family LDP97_05190 PF01914 MarC family integral membrane protein LDP97_05195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_05200 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_05205 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_05205 PF12911 N-terminal TM domain of oligopeptide transport permease C LDP97_05210 PF00005 ABC transporter LDP97_05210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_05220 PF00005 ABC transporter LDP97_05220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_05225 PF03741 Integral membrane protein TerC family LDP97_05230 PF00842 Alanine racemase, C-terminal domain LDP97_05230 PF01168 Alanine racemase, N-terminal domain LDP97_05240 PF00375 Sodium:dicarboxylate symporter family LDP97_05255 PF01979 Amidohydrolase family LDP97_05265 PF00672 HAMP domain LDP97_05265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_05270 PF01230 HIT domain LDP97_05305 PF07549 SecD/SecF GG Motif LDP97_05305 PF13721 SecD export protein N-terminal TM region LDP97_05305 PF02355 Protein export membrane protein LDP97_05310 PF02355 Protein export membrane protein LDP97_05310 PF07549 SecD/SecF GG Motif LDP97_05320 PF05661 Protein of unknown function (DUF808) LDP97_05325 PF08439 Oligopeptidase F LDP97_05325 PF01432 Peptidase family M3 LDP97_05330 PF01432 Peptidase family M3 LDP97_05330 PF08439 Oligopeptidase F LDP97_05335 PF00860 Permease family LDP97_05340 PF05728 Uncharacterised protein family (UPF0227) LDP97_05345 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_05365 PF01906 Putative heavy-metal-binding LDP97_05375 PF14824 Sirohaem biosynthesis protein central LDP97_05375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDP97_05375 PF10414 Sirohaem synthase dimerisation region LDP97_05380 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDP97_05380 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDP97_05380 PF13187 4Fe-4S dicluster domain LDP97_05385 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LDP97_05385 PF00175 Oxidoreductase NAD-binding domain LDP97_05390 PF17179 4Fe-4S dicluster domain LDP97_05395 PF01734 Patatin-like phospholipase LDP97_05400 PF02016 LD-carboxypeptidase N-terminal domain LDP97_05400 PF17676 LD-carboxypeptidase C-terminal domain LDP97_05405 PF00884 Sulfatase LDP97_05415 PF00696 Amino acid kinase family LDP97_05415 PF01842 ACT domain LDP97_05420 PF00696 Amino acid kinase family LDP97_05420 PF00583 Acetyltransferase (GNAT) family LDP97_05425 PF01625 Peptide methionine sulfoxide reductase LDP97_05445 PF00561 alpha/beta hydrolase fold LDP97_05450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDP97_05460 PF03466 LysR substrate binding domain LDP97_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_05465 PF02652 L-lactate permease LDP97_05470 PF02754 Cysteine-rich domain LDP97_05475 PF11870 Domain of unknown function (DUF3390) LDP97_05475 PF13183 4Fe-4S dicluster domain LDP97_05475 PF02589 LUD domain LDP97_05480 PF02589 LUD domain LDP97_05485 PF02913 FAD linked oxidases, C-terminal domain LDP97_05485 PF01565 FAD binding domain LDP97_05505 PF12704 MacB-like periplasmic core domain LDP97_05505 PF02687 FtsX-like permease family LDP97_05510 PF00005 ABC transporter LDP97_05520 PF07690 Major Facilitator Superfamily LDP97_05535 PF01593 Flavin containing amine oxidoreductase LDP97_05540 PF03239 Iron permease FTR1 family LDP97_05555 PF03350 Uncharacterized protein family, UPF0114 LDP97_05570 PF01740 STAS domain LDP97_05570 PF00916 Sulfate permease family LDP97_05605 PF07715 TonB-dependent Receptor Plug Domain LDP97_05605 PF00593 TonB dependent receptor LDP97_05635 PF00842 Alanine racemase, C-terminal domain LDP97_05635 PF01168 Alanine racemase, N-terminal domain LDP97_05640 PF00672 HAMP domain LDP97_05640 PF12729 Four helix bundle sensory module for signal transduction LDP97_05640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_05645 PF03707 Bacterial signalling protein N terminal repeat LDP97_05645 PF00563 EAL domain LDP97_05645 PF00990 Diguanylate cyclase, GGDEF domain LDP97_05650 PF01339 CheB methylesterase LDP97_05650 PF00072 Response regulator receiver domain LDP97_05655 PF03705 CheR methyltransferase, all-alpha domain LDP97_05655 PF01739 CheR methyltransferase, SAM binding domain LDP97_05660 PF01584 CheW-like domain LDP97_05665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_05665 PF17202 Single cache domain 3 LDP97_05665 PF00672 HAMP domain LDP97_05670 PF01584 CheW-like domain LDP97_05670 PF09078 CheY binding LDP97_05670 PF02895 Signal transducing histidine kinase, homodimeric domain LDP97_05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_05670 PF01627 Hpt domain LDP97_05680 PF00072 Response regulator receiver domain LDP97_05685 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LDP97_05685 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LDP97_05690 PF13247 4Fe-4S dicluster domain LDP97_05695 PF03916 Polysulphide reductase, NrfD LDP97_05700 PF00374 Nickel-dependent hydrogenase LDP97_05705 PF01750 Hydrogenase maturation protease LDP97_05710 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE LDP97_05715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_05720 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_05725 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_05725 PF12911 N-terminal TM domain of oligopeptide transport permease C LDP97_05730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_05730 PF00005 ABC transporter LDP97_05735 PF00005 ABC transporter LDP97_05735 PF08402 TOBE domain LDP97_05740 PF02492 CobW/HypB/UreG, nucleotide-binding domain LDP97_05750 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LDP97_05755 PF02769 AIR synthase related protein, C-terminal domain LDP97_05755 PF00586 AIR synthase related protein, N-terminal domain LDP97_05760 PF01924 Hydrogenase formation hypA family LDP97_05765 PF01455 HupF/HypC family LDP97_05770 PF00708 Acylphosphatase LDP97_05770 PF17788 HypF Kae1-like domain LDP97_05770 PF01300 Telomere recombination LDP97_05770 PF07503 HypF finger LDP97_05775 PF09106 Elongation factor SelB, winged helix LDP97_05775 PF09107 Elongation factor SelB, winged helix LDP97_05775 PF09105 Elongation factor SelB, winged helix LDP97_05775 PF00009 Elongation factor Tu GTP binding domain LDP97_05775 PF03144 Elongation factor Tu domain 2 LDP97_05780 PF12390 Selenocysteine synthase N terminal LDP97_05780 PF03841 L-seryl-tRNA selenium transferase LDP97_05790 PF01750 Hydrogenase maturation protease LDP97_05795 PF07450 Formate hydrogenlyase maturation protein HycH LDP97_05800 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LDP97_05805 PF12838 4Fe-4S dicluster domain LDP97_05810 PF00374 Nickel-dependent hydrogenase LDP97_05810 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LDP97_05810 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LDP97_05815 PF00146 NADH dehydrogenase LDP97_05820 PF00361 Proton-conducting membrane transporter LDP97_05825 PF00037 4Fe-4S binding domain LDP97_05825 PF12798 4Fe-4S binding domain LDP97_05830 PF02705 K+ potassium transporter LDP97_05845 PF12800 4Fe-4S binding domain LDP97_05845 PF13247 4Fe-4S dicluster domain LDP97_05860 PF01590 GAF domain LDP97_05860 PF02954 Bacterial regulatory protein, Fis family LDP97_05860 PF00158 Sigma-54 interaction domain LDP97_05865 PF02634 FdhD/NarQ family LDP97_05870 PF13662 Toprim domain LDP97_05870 PF02132 RecR protein LDP97_05875 PF00183 Hsp90 protein LDP97_05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_05880 PF05191 Adenylate kinase, active site lid LDP97_05885 PF00762 Ferrochelatase LDP97_05895 PF00294 pfkB family carbohydrate kinase LDP97_05915 PF00483 Nucleotidyl transferase LDP97_05925 PF07273 Protein of unknown function (DUF1439) LDP97_05930 PF00425 chorismate binding enzyme LDP97_05935 PF00501 AMP-binding enzyme LDP97_05935 PF13193 AMP-binding enzyme C-terminal domain LDP97_05940 PF00857 Isochorismatase family LDP97_05940 PF00550 Phosphopantetheine attachment site LDP97_05945 PF00501 AMP-binding enzyme LDP97_05945 PF13193 AMP-binding enzyme C-terminal domain LDP97_05945 PF00668 Condensation domain LDP97_05945 PF00975 Thioesterase domain LDP97_05945 PF00550 Phosphopantetheine attachment site LDP97_05955 PF00550 Phosphopantetheine attachment site LDP97_05955 PF07993 Male sterility protein LDP97_05955 PF00668 Condensation domain LDP97_05955 PF13193 AMP-binding enzyme C-terminal domain LDP97_05955 PF00501 AMP-binding enzyme LDP97_05960 PF00975 Thioesterase domain LDP97_05960 PF00501 AMP-binding enzyme LDP97_05960 PF13193 AMP-binding enzyme C-terminal domain LDP97_05960 PF00550 Phosphopantetheine attachment site LDP97_05960 PF00668 Condensation domain LDP97_05965 PF01497 Periplasmic binding protein LDP97_05970 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LDP97_05970 PF01648 4'-phosphopantetheinyl transferase superfamily LDP97_05975 PF00005 ABC transporter LDP97_05980 PF01032 FecCD transport family LDP97_05985 PF01032 FecCD transport family LDP97_05990 PF07715 TonB-dependent Receptor Plug Domain LDP97_05990 PF00593 TonB dependent receptor LDP97_06005 PF11143 Protein of unknown function (DUF2919) LDP97_06010 PF01544 CorA-like Mg2+ transporter protein LDP97_06020 PF01012 Electron transfer flavoprotein domain LDP97_06025 PF00766 Electron transfer flavoprotein FAD-binding domain LDP97_06025 PF01012 Electron transfer flavoprotein domain LDP97_06030 PF00266 Aminotransferase class-V LDP97_06035 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDP97_06040 PF00793 DAHP synthetase I family LDP97_06045 PF00672 HAMP domain LDP97_06045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_06050 PF04055 Radical SAM superfamily LDP97_06055 PF13742 OB-fold nucleic acid binding domain LDP97_06055 PF02601 Exonuclease VII, large subunit LDP97_06060 PF00892 EamA-like transporter family LDP97_06065 PF02472 Biopolymer transport protein ExbD/TolR LDP97_06070 PF01618 MotA/TolQ/ExbB proton channel family LDP97_06080 PF02705 K+ potassium transporter LDP97_06085 PF00571 CBS domain LDP97_06085 PF00478 IMP dehydrogenase / GMP reductase domain LDP97_06090 PF00117 Glutamine amidotransferase class-I LDP97_06090 PF00958 GMP synthase C terminal domain LDP97_06090 PF02540 NAD synthase LDP97_06095 PF00589 Phage integrase family LDP97_06095 PF13356 Arm DNA-binding domain LDP97_06150 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDP97_06150 PF12833 Helix-turn-helix domain LDP97_06150 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDP97_06150 PF02805 Metal binding domain of Ada LDP97_06165 PF05724 Thiopurine S-methyltransferase (TPMT) LDP97_06170 PF00675 Insulinase (Peptidase family M16) LDP97_06170 PF05193 Peptidase M16 inactive domain LDP97_06175 PF00300 Histidine phosphatase superfamily (branch 1) LDP97_06185 PF00892 EamA-like transporter family LDP97_06190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_06195 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LDP97_06200 PF03461 TRCF domain LDP97_06200 PF00271 Helicase conserved C-terminal domain LDP97_06200 PF00270 DEAD/DEAH box helicase LDP97_06200 PF02559 CarD-like/TRCF domain LDP97_06200 PF17757 UvrB interaction domain LDP97_06210 PF12704 MacB-like periplasmic core domain LDP97_06210 PF02687 FtsX-like permease family LDP97_06215 PF00005 ABC transporter LDP97_06220 PF02687 FtsX-like permease family LDP97_06220 PF12704 MacB-like periplasmic core domain LDP97_06235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDP97_06235 PF05698 Bacterial trigger factor protein (TF) C-terminus LDP97_06235 PF05697 Bacterial trigger factor protein (TF) LDP97_06240 PF00574 Clp protease LDP97_06245 PF06689 ClpX C4-type zinc finger LDP97_06245 PF07724 AAA domain (Cdc48 subfamily) LDP97_06245 PF10431 C-terminal, D2-small domain, of ClpB protein LDP97_06250 PF05362 Lon protease (S16) C-terminal proteolytic domain LDP97_06250 PF00004 ATPase family associated with various cellular activities (AAA) LDP97_06250 PF02190 ATP-dependent protease La (LON) substrate-binding domain LDP97_06255 PF00216 Bacterial DNA-binding protein LDP97_06260 PF13145 PPIC-type PPIASE domain LDP97_06265 PF12848 ABC transporter LDP97_06265 PF00005 ABC transporter LDP97_06270 PF00474 Sodium:solute symporter family LDP97_06275 PF04341 Protein of unknown function, DUF485 LDP97_06290 PF00378 Enoyl-CoA hydratase/isomerase LDP97_06325 PF01235 Sodium:alanine symporter family LDP97_06335 PF06167 Glucose-regulated metallo-peptidase M90 LDP97_06340 PF01184 GPR1/FUN34/yaaH family LDP97_06360 PF00376 MerR family regulatory protein LDP97_06360 PF09278 MerR, DNA binding LDP97_06365 PF00682 HMGL-like LDP97_06370 PF00364 Biotin-requiring enzyme LDP97_06370 PF00289 Biotin carboxylase, N-terminal domain LDP97_06370 PF02785 Biotin carboxylase C-terminal domain LDP97_06370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDP97_06375 PF00378 Enoyl-CoA hydratase/isomerase LDP97_06380 PF01039 Carboxyl transferase domain LDP97_06385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDP97_06385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDP97_06385 PF02770 Acyl-CoA dehydrogenase, middle domain LDP97_06390 PF00171 Aldehyde dehydrogenase family LDP97_06395 PF02770 Acyl-CoA dehydrogenase, middle domain LDP97_06395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDP97_06395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDP97_06400 PF00378 Enoyl-CoA hydratase/isomerase LDP97_06405 PF00378 Enoyl-CoA hydratase/isomerase LDP97_06410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LDP97_06410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LDP97_06420 PF13520 Amino acid permease LDP97_06425 PF01925 Sulfite exporter TauE/SafE LDP97_06450 PF00563 EAL domain LDP97_06450 PF00990 Diguanylate cyclase, GGDEF domain LDP97_06450 PF08448 PAS fold LDP97_06455 PF00512 His Kinase A (phospho-acceptor) domain LDP97_06455 PF00072 Response regulator receiver domain LDP97_06455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_06455 PF09456 RcsC Alpha-Beta-Loop (ABL) LDP97_06470 PF04002 RadC-like JAB domain LDP97_06485 PF00239 Resolvase, N terminal domain LDP97_06485 PF02796 Helix-turn-helix domain of resolvase LDP97_06505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_06505 PF03466 LysR substrate binding domain LDP97_06510 PF12146 Serine aminopeptidase, S33 LDP97_06515 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LDP97_06515 PF07676 WD40-like Beta Propeller Repeat LDP97_06515 PF00326 Prolyl oligopeptidase family LDP97_06525 PF03466 LysR substrate binding domain LDP97_06525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_06530 PF00248 Aldo/keto reductase family LDP97_06540 PF00248 Aldo/keto reductase family LDP97_06545 PF07694 5TMR of 5TMR-LYT LDP97_06545 PF00990 Diguanylate cyclase, GGDEF domain LDP97_06550 PF03466 LysR substrate binding domain LDP97_06550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_06555 PF00232 Glycosyl hydrolase family 1 LDP97_06560 PF00563 EAL domain LDP97_06560 PF13188 PAS domain LDP97_06560 PF03707 Bacterial signalling protein N terminal repeat LDP97_06560 PF00990 Diguanylate cyclase, GGDEF domain LDP97_06570 PF01966 HD domain LDP97_06580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_06580 PF03466 LysR substrate binding domain LDP97_06585 PF01261 Xylose isomerase-like TIM barrel LDP97_06590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDP97_06590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDP97_06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_06595 PF03466 LysR substrate binding domain LDP97_06605 PF03279 Bacterial lipid A biosynthesis acyltransferase LDP97_06610 PF03279 Bacterial lipid A biosynthesis acyltransferase LDP97_06625 PF17151 Periplasmic sensor domain LDP97_06625 PF00990 Diguanylate cyclase, GGDEF domain LDP97_06635 PF00136 DNA polymerase family B LDP97_06635 PF03104 DNA polymerase family B, exonuclease domain LDP97_06665 PF01554 MatE LDP97_06670 PF06786 Uncharacterised protein family (UPF0253) LDP97_06675 PF00677 Lumazine binding domain LDP97_06685 PF13419 Haloacid dehalogenase-like hydrolase LDP97_06690 PF02222 ATP-grasp domain LDP97_06690 PF01370 NAD dependent epimerase/dehydratase family LDP97_06695 PF00892 EamA-like transporter family LDP97_06700 PF02525 Flavodoxin-like fold LDP97_06725 PF17783 CvfB-like winged helix domain LDP97_06725 PF13509 S1 domain LDP97_06735 PF04269 Protein of unknown function, DUF440 LDP97_06740 PF00912 Transglycosylase LDP97_06745 PF04269 Protein of unknown function, DUF440 LDP97_06750 PF03776 Septum formation topological specificity factor MinE LDP97_06755 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LDP97_06760 PF03775 Septum formation inhibitor MinC, C-terminal domain LDP97_06760 PF05209 Septum formation inhibitor MinC, N-terminal domain LDP97_06765 PF05166 YcgL domain LDP97_06770 PF13406 Transglycosylase SLT domain LDP97_06775 PF03313 Serine dehydratase alpha chain LDP97_06775 PF03315 Serine dehydratase beta chain LDP97_06780 PF03315 Serine dehydratase beta chain LDP97_06780 PF03313 Serine dehydratase alpha chain LDP97_06785 PF06865 Pyrimidine/purine nucleoside phosphorylase LDP97_06790 PF00375 Sodium:dicarboxylate symporter family LDP97_06795 PF09278 MerR, DNA binding LDP97_06795 PF00376 MerR family regulatory protein LDP97_06800 PF02803 Thiolase, C-terminal domain LDP97_06800 PF00108 Thiolase, N-terminal domain LDP97_06805 PF00563 EAL domain LDP97_06805 PF08668 HDOD domain LDP97_06815 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LDP97_06825 PF04542 Sigma-70 region 2 LDP97_06825 PF08281 Sigma-70, region 4 LDP97_06850 PF01882 Protein of unknown function DUF58 LDP97_06855 PF17863 AAA lid domain LDP97_06855 PF07726 ATPase family associated with various cellular activities (AAA) LDP97_06860 PF02803 Thiolase, C-terminal domain LDP97_06860 PF00108 Thiolase, N-terminal domain LDP97_06865 PF00378 Enoyl-CoA hydratase/isomerase LDP97_06865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDP97_06865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDP97_06875 PF07152 YaeQ protein LDP97_06885 PF06074 Protein of unknown function (DUF935) LDP97_06920 PF10123 Mu-like prophage I protein LDP97_06925 PF02954 Bacterial regulatory protein, Fis family LDP97_06925 PF13188 PAS domain LDP97_06925 PF00158 Sigma-54 interaction domain LDP97_06930 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDP97_06930 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDP97_06935 PF00291 Pyridoxal-phosphate dependent enzyme LDP97_06940 PF07687 Peptidase dimerisation domain LDP97_06940 PF01546 Peptidase family M20/M25/M40 LDP97_06945 PF01979 Amidohydrolase family LDP97_06950 PF00696 Amino acid kinase family LDP97_06955 PF00892 EamA-like transporter family LDP97_06960 PF02625 XdhC and CoxI family LDP97_06960 PF13478 XdhC Rossmann domain LDP97_06970 PF12804 MobA-like NTP transferase domain LDP97_06975 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LDP97_06975 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_06980 PF01979 Amidohydrolase family LDP97_06985 PF00941 FAD binding domain in molybdopterin dehydrogenase LDP97_06990 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LDP97_06990 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LDP97_06990 PF01799 [2Fe-2S] binding domain LDP97_06995 PF00860 Permease family LDP97_07000 PF01979 Amidohydrolase family LDP97_07005 PF00860 Permease family LDP97_07010 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LDP97_07010 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LDP97_07015 PF00941 FAD binding domain in molybdopterin dehydrogenase LDP97_07015 PF03450 CO dehydrogenase flavoprotein C-terminal domain LDP97_07020 PF01799 [2Fe-2S] binding domain LDP97_07020 PF00111 2Fe-2S iron-sulfur cluster binding domain LDP97_07030 PF05433 Glycine zipper 2TM domain LDP97_07040 PF03606 C4-dicarboxylate anaerobic carrier LDP97_07045 PF00501 AMP-binding enzyme LDP97_07045 PF13193 AMP-binding enzyme C-terminal domain LDP97_07050 PF01502 Phosphoribosyl-AMP cyclohydrolase LDP97_07050 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LDP97_07055 PF00977 Histidine biosynthesis protein LDP97_07060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_07060 PF00512 His Kinase A (phospho-acceptor) domain LDP97_07060 PF01627 Hpt domain LDP97_07060 PF00072 Response regulator receiver domain LDP97_07065 PF00990 Diguanylate cyclase, GGDEF domain LDP97_07065 PF08448 PAS fold LDP97_07070 PF00072 Response regulator receiver domain LDP97_07075 PF00977 Histidine biosynthesis protein LDP97_07080 PF00117 Glutamine amidotransferase class-I LDP97_07085 PF08645 Polynucleotide kinase 3 phosphatase LDP97_07085 PF00475 Imidazoleglycerol-phosphate dehydratase LDP97_07090 PF00155 Aminotransferase class I and II LDP97_07095 PF00815 Histidinol dehydrogenase LDP97_07100 PF01634 ATP phosphoribosyltransferase LDP97_07100 PF08029 HisG, C-terminal domain LDP97_07110 PF13307 Helicase C-terminal domain LDP97_07110 PF04851 Type III restriction enzyme, res subunit LDP97_07115 PF00814 Glycoprotease family LDP97_07125 PF12697 Alpha/beta hydrolase family LDP97_07125 PF08241 Methyltransferase domain LDP97_07130 PF00501 AMP-binding enzyme LDP97_07130 PF13193 AMP-binding enzyme C-terminal domain LDP97_07135 PF01612 3'-5' exonuclease LDP97_07135 PF00570 HRDC domain LDP97_07140 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_07255 PF02796 Helix-turn-helix domain of resolvase LDP97_07255 PF00239 Resolvase, N terminal domain LDP97_07265 PF00239 Resolvase, N terminal domain LDP97_07265 PF13408 Recombinase zinc beta ribbon domain LDP97_07265 PF07508 Recombinase LDP97_07275 PF01207 Dihydrouridine synthase (Dus) LDP97_07280 PF04304 Protein of unknown function (DUF454) LDP97_07285 PF00156 Phosphoribosyl transferase domain LDP97_07290 PF12169 DNA polymerase III subunits gamma and tau domain III LDP97_07290 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LDP97_07290 PF12170 DNA polymerase III tau subunit V interacting with alpha LDP97_07295 PF02575 YbaB/EbfC DNA-binding family LDP97_07300 PF12167 Arm DNA-binding domain LDP97_07300 PF00589 Phage integrase family LDP97_07325 PF12684 PDDEXK-like domain of unknown function (DUF3799) LDP97_07325 PF06630 Enterobacterial exodeoxyribonuclease VIII LDP97_07430 PF00199 Catalase LDP97_07430 PF06628 Catalase-related immune-responsive LDP97_07440 PF00080 Copper/zinc superoxide dismutase (SODC) LDP97_07455 PF09669 Phage regulatory protein Rha (Phage_pRha) LDP97_07455 PF03374 Phage antirepressor protein KilAC domain LDP97_07460 PF05772 NinB protein LDP97_07475 PF01338 Bacillus thuringiensis toxin LDP97_07480 PF13438 Domain of unknown function (DUF4113) LDP97_07480 PF00817 impB/mucB/samB family LDP97_07480 PF11799 impB/mucB/samB family C-terminal domain LDP97_07480 PF11798 IMS family HHH motif LDP97_07485 PF00717 Peptidase S24-like LDP97_07505 PF00816 H-NS histone family LDP97_07665 PF00072 Response regulator receiver domain LDP97_07665 PF00196 Bacterial regulatory proteins, luxR family LDP97_07670 PF00571 CBS domain LDP97_07670 PF01368 DHH family LDP97_07670 PF02272 DHHA1 domain LDP97_07670 PF01743 Poly A polymerase head domain LDP97_07675 PF00271 Helicase conserved C-terminal domain LDP97_07675 PF00270 DEAD/DEAH box helicase LDP97_07675 PF11898 Domain of unknown function (DUF3418) LDP97_07675 PF04408 Helicase associated domain (HA2) LDP97_07675 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LDP97_07685 PF01386 Ribosomal L25p family LDP97_07690 PF00072 Response regulator receiver domain LDP97_07690 PF01627 Hpt domain LDP97_07690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDP97_07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_07690 PF00672 HAMP domain LDP97_07690 PF00512 His Kinase A (phospho-acceptor) domain LDP97_07695 PF00072 Response regulator receiver domain LDP97_07700 PF00753 Metallo-beta-lactamase superfamily LDP97_07710 PF00586 AIR synthase related protein, N-terminal domain LDP97_07710 PF02769 AIR synthase related protein, C-terminal domain LDP97_07725 PF10672 S-adenosylmethionine-dependent methyltransferase LDP97_07725 PF17785 PUA-like domain LDP97_07730 PF12729 Four helix bundle sensory module for signal transduction LDP97_07730 PF00672 HAMP domain LDP97_07730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_07735 PF00708 Acylphosphatase LDP97_07740 PF00043 Glutathione S-transferase, C-terminal domain LDP97_07740 PF02798 Glutathione S-transferase, N-terminal domain LDP97_07745 PF08264 Anticodon-binding domain of tRNA LDP97_07745 PF09334 tRNA synthetases class I (M) LDP97_07745 PF01588 Putative tRNA binding domain LDP97_07750 PF10609 NUBPL iron-transfer P-loop NTPase LDP97_07755 PF00485 Phosphoribulokinase / Uridine kinase family LDP97_07760 PF00692 dUTPase LDP97_07765 PF01384 Phosphate transporter family LDP97_07770 PF12111 Polyribonucleotide phosphorylase C terminal LDP97_07770 PF10150 Ribonuclease E/G family LDP97_07770 PF00575 S1 RNA binding domain LDP97_07775 PF00849 RNA pseudouridylate synthase LDP97_07775 PF01479 S4 domain LDP97_07785 PF02545 Maf-like protein LDP97_07790 PF07690 Major Facilitator Superfamily LDP97_07795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_07795 PF03466 LysR substrate binding domain LDP97_07805 PF02620 Large ribosomal RNA subunit accumulation protein YceD LDP97_07810 PF01783 Ribosomal L32p protein family LDP97_07815 PF02504 Fatty acid synthesis protein LDP97_07820 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDP97_07820 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDP97_07825 PF00698 Acyl transferase domain LDP97_07835 PF00550 Phosphopantetheine attachment site LDP97_07840 PF00109 Beta-ketoacyl synthase, N-terminal domain LDP97_07840 PF02801 Beta-ketoacyl synthase, C-terminal domain LDP97_07845 PF01063 Amino-transferase class IV LDP97_07850 PF02618 YceG-like family LDP97_07855 PF02223 Thymidylate kinase LDP97_07860 PF09115 DNA polymerase III, delta subunit, C terminal LDP97_07865 PF01026 TatD related DNase LDP97_07875 PF00589 Phage integrase family LDP97_07885 PF01189 16S rRNA methyltransferase RsmB/F LDP97_07885 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LDP97_07885 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LDP97_07890 PF02470 MlaD protein LDP97_07895 PF04403 Paraquat-inducible protein A LDP97_07910 PF00285 Citrate synthase, C-terminal domain LDP97_07915 PF03972 MmgE/PrpD family LDP97_07930 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LDP97_07930 PF06974 Protein of unknown function (DUF1298) LDP97_07955 PF00106 short chain dehydrogenase LDP97_07965 PF07130 YebG protein LDP97_07975 PF13654 AAA domain LDP97_07975 PF05362 Lon protease (S16) C-terminal proteolytic domain LDP97_07980 PF07977 FabA-like domain LDP97_07985 PF04957 Ribosome modulation factor LDP97_07995 PF12848 ABC transporter LDP97_07995 PF16326 ABC transporter C-terminal domain LDP97_07995 PF00005 ABC transporter LDP97_08005 PF02926 THUMP domain LDP97_08005 PF01170 Putative RNA methylase family UPF0020 LDP97_08005 PF10672 S-adenosylmethionine-dependent methyltransferase LDP97_08010 PF07126 Cell-division protein ZapC LDP97_08015 PF01180 Dihydroorotate dehydrogenase LDP97_08020 PF05088 Bacterial NAD-glutamate dehydrogenase LDP97_08030 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LDP97_08030 PF11940 Domain of unknown function (DUF3458) Ig-like fold LDP97_08030 PF01433 Peptidase family M1 domain LDP97_08035 PF11818 C-terminal domain of tail specific protease (DUF3340) LDP97_08035 PF00595 PDZ domain LDP97_08035 PF03572 Peptidase family S41 LDP97_08035 PF17804 Tail specific protease N-terminal domain LDP97_08040 PF17516 ProQ C-terminal domain LDP97_08040 PF04352 ProQ/FINO family LDP97_08045 PF13185 GAF domain LDP97_08055 PF00115 Cytochrome C and Quinol oxidase polypeptide I LDP97_08070 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LDP97_08070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LDP97_08080 PF00403 Heavy-metal-associated domain LDP97_08095 PF13545 Crp-like helix-turn-helix domain LDP97_08095 PF00027 Cyclic nucleotide-binding domain LDP97_08100 PF00582 Universal stress protein family LDP97_08105 PF01171 PP-loop family LDP97_08120 PF14497 Glutathione S-transferase, C-terminal domain LDP97_08120 PF02798 Glutathione S-transferase, N-terminal domain LDP97_08125 PF05025 RbsD / FucU transport protein family LDP97_08130 PF00005 ABC transporter LDP97_08135 PF02653 Branched-chain amino acid transport system / permease component LDP97_08140 PF13407 Periplasmic binding protein domain LDP97_08145 PF00294 pfkB family carbohydrate kinase LDP97_08150 PF00356 Bacterial regulatory proteins, lacI family LDP97_08165 PF02146 Sir2 family LDP97_08180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_08180 PF00512 His Kinase A (phospho-acceptor) domain LDP97_08180 PF09456 RcsC Alpha-Beta-Loop (ABL) LDP97_08180 PF00072 Response regulator receiver domain LDP97_08185 PF00216 Bacterial DNA-binding protein LDP97_08190 PF01588 Putative tRNA binding domain LDP97_08190 PF03483 B3/4 domain LDP97_08190 PF03147 Ferredoxin-fold anticodon binding domain LDP97_08190 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LDP97_08190 PF03484 tRNA synthetase B5 domain LDP97_08195 PF01409 tRNA synthetases class II core domain (F) LDP97_08195 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LDP97_08200 PF00453 Ribosomal protein L20 LDP97_08205 PF01632 Ribosomal protein L35 LDP97_08210 PF05198 Translation initiation factor IF-3, N-terminal domain LDP97_08210 PF00707 Translation initiation factor IF-3, C-terminal domain LDP97_08215 PF02824 TGS domain LDP97_08215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDP97_08215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDP97_08215 PF03129 Anticodon binding domain LDP97_08225 PF04055 Radical SAM superfamily LDP97_08235 PF03989 DNA gyrase C-terminal domain, beta-propeller LDP97_08235 PF00521 DNA gyrase/topoisomerase IV, subunit A LDP97_08245 PF13419 Haloacid dehalogenase-like hydrolase LDP97_08250 PF03477 ATP cone domain LDP97_08250 PF02867 Ribonucleotide reductase, barrel domain LDP97_08250 PF00317 Ribonucleotide reductase, all-alpha domain LDP97_08255 PF00268 Ribonucleotide reductase, small chain LDP97_08260 PF00111 2Fe-2S iron-sulfur cluster binding domain LDP97_08265 PF06725 3D domain LDP97_08265 PF03562 MltA specific insert domain LDP97_08270 PF06945 Protein of unknown function (DUF1289) LDP97_08280 PF03613 PTS system mannose/fructose/sorbose family IID component LDP97_08285 PF03609 PTS system sorbose-specific iic component LDP97_08290 PF03610 PTS system fructose IIA component LDP97_08290 PF03830 PTS system sorbose subfamily IIB component LDP97_08305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDP97_08305 PF00356 Bacterial regulatory proteins, lacI family LDP97_08310 PF06560 Glucose-6-phosphate isomerase (GPI) LDP97_08315 PF02378 Phosphotransferase system, EIIC LDP97_08315 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDP97_08320 PF00294 pfkB family carbohydrate kinase LDP97_08325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDP97_08325 PF00381 PTS HPr component phosphorylation site LDP97_08330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDP97_08330 PF00356 Bacterial regulatory proteins, lacI family LDP97_08335 PF03222 Tryptophan/tyrosine permease family LDP97_08355 PF00270 DEAD/DEAH box helicase LDP97_08355 PF00271 Helicase conserved C-terminal domain LDP97_08365 PF01264 Chorismate synthase LDP97_08370 PF05175 Methyltransferase small domain LDP97_08375 PF01713 Smr domain LDP97_08385 PF08448 PAS fold LDP97_08385 PF00990 Diguanylate cyclase, GGDEF domain LDP97_08390 PF00300 Histidine phosphatase superfamily (branch 1) LDP97_08405 PF08329 Chitinase A, N-terminal domain LDP97_08405 PF00704 Glycosyl hydrolases family 18 LDP97_08415 PF03831 PhnA domain LDP97_08415 PF08274 PhnA Zinc-Ribbon LDP97_08430 PF02567 Phenazine biosynthesis-like protein LDP97_08445 PF01327 Polypeptide deformylase LDP97_08460 PF05036 Sporulation related domain LDP97_08460 PF03330 Lytic transglycolase LDP97_08465 PF04310 MukB N-terminal LDP97_08465 PF16330 MukB hinge domain LDP97_08470 PF04288 MukE-like family LDP97_08475 PF03882 MukF winged-helix domain LDP97_08475 PF17193 MukF C-terminal domain LDP97_08475 PF17192 MukF middle domain LDP97_08480 PF13847 Methyltransferase domain LDP97_08485 PF02698 DUF218 domain LDP97_08490 PF00121 Triosephosphate isomerase LDP97_08495 PF00365 Phosphofructokinase LDP97_08500 PF07687 Peptidase dimerisation domain LDP97_08500 PF01546 Peptidase family M20/M25/M40 LDP97_08505 PF13419 Haloacid dehalogenase-like hydrolase LDP97_08510 PF02789 Cytosol aminopeptidase family, N-terminal domain LDP97_08510 PF00883 Cytosol aminopeptidase family, catalytic domain LDP97_08550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDP97_08550 PF00128 Alpha amylase, catalytic domain LDP97_08560 PF11398 Protein of unknown function (DUF2813) LDP97_08565 PF12833 Helix-turn-helix domain LDP97_08565 PF14525 AraC-binding-like domain LDP97_08575 PF03466 LysR substrate binding domain LDP97_08575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_08580 PF01925 Sulfite exporter TauE/SafE LDP97_08590 PF03942 DTW domain LDP97_08595 PF18029 Glyoxalase-like domain LDP97_08595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDP97_08600 PF07478 D-ala D-ala ligase C-terminus LDP97_08600 PF01820 D-ala D-ala ligase N-terminus LDP97_08610 PF00255 Glutathione peroxidase LDP97_08615 PF00270 DEAD/DEAH box helicase LDP97_08615 PF00271 Helicase conserved C-terminal domain LDP97_08620 PF13673 Acetyltransferase (GNAT) domain LDP97_08630 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LDP97_08640 PF01928 CYTH domain LDP97_08650 PF00583 Acetyltransferase (GNAT) family LDP97_08655 PF00465 Iron-containing alcohol dehydrogenase LDP97_08660 PF03992 Antibiotic biosynthesis monooxygenase LDP97_08665 PF08543 Phosphomethylpyrimidine kinase LDP97_08685 PF00561 alpha/beta hydrolase fold LDP97_08685 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LDP97_08690 PF01575 MaoC like domain LDP97_08705 PF00664 ABC transporter transmembrane region LDP97_08705 PF00005 ABC transporter LDP97_08710 PF00664 ABC transporter transmembrane region LDP97_08710 PF00005 ABC transporter LDP97_08715 PF00072 Response regulator receiver domain LDP97_08715 PF01627 Hpt domain LDP97_08715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDP97_08715 PF00512 His Kinase A (phospho-acceptor) domain LDP97_08715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_08715 PF00672 HAMP domain LDP97_08720 PF00085 Thioredoxin LDP97_08725 PF00939 Sodium:sulfate symporter transmembrane region LDP97_08730 PF00343 Carbohydrate phosphorylase LDP97_08750 PF04715 Anthranilate synthase component I, N terminal region LDP97_08750 PF00425 chorismate binding enzyme LDP97_08755 PF00293 NUDIX domain LDP97_08760 PF03222 Tryptophan/tyrosine permease family LDP97_08765 PF00375 Sodium:dicarboxylate symporter family LDP97_08770 PF00570 HRDC domain LDP97_08770 PF09382 RQC domain LDP97_08770 PF00270 DEAD/DEAH box helicase LDP97_08770 PF00271 Helicase conserved C-terminal domain LDP97_08770 PF16124 RecQ zinc-binding LDP97_08775 PF08298 PrkA AAA domain LDP97_08775 PF06798 PrkA serine protein kinase C-terminal domain LDP97_08780 PF04285 Protein of unknown function (DUF444) LDP97_08785 PF04293 SpoVR like protein LDP97_08790 PF07840 FadR C-terminal domain LDP97_08790 PF00392 Bacterial regulatory proteins, gntR family LDP97_08795 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LDP97_08800 PF02600 Disulfide bond formation protein DsbB LDP97_08805 PF09335 SNARE associated Golgi protein LDP97_08815 PF00271 Helicase conserved C-terminal domain LDP97_08815 PF04851 Type III restriction enzyme, res subunit LDP97_08815 PF02151 UvrB/uvrC motif LDP97_08815 PF12344 Ultra-violet resistance protein B LDP97_08815 PF17757 UvrB interaction domain LDP97_08825 PF06826 Predicted Permease Membrane Region LDP97_08825 PF02080 TrkA-C domain LDP97_08830 PF01464 Transglycosylase SLT domain LDP97_08830 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_08845 PF01970 Tripartite tricarboxylate transporter TctA family LDP97_08850 PF08279 HTH domain LDP97_08850 PF00072 Response regulator receiver domain LDP97_08850 PF12431 Transcriptional regulator LDP97_08855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_08855 PF00989 PAS fold LDP97_08855 PF17203 Single cache domain 3 LDP97_08855 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LDP97_08860 PF01047 MarR family LDP97_08860 PF00480 ROK family LDP97_08865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_08865 PF00672 HAMP domain LDP97_08865 PF17200 Single Cache domain 2 LDP97_08870 PF02810 SEC-C motif LDP97_08875 PF01266 FAD dependent oxidoreductase LDP97_08875 PF04324 BFD-like [2Fe-2S] binding domain LDP97_08880 PF00890 FAD binding domain LDP97_08885 PF13183 4Fe-4S dicluster domain LDP97_08885 PF02754 Cysteine-rich domain LDP97_08900 PF02335 Cytochrome c552 LDP97_08905 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LDP97_08905 PF13435 Cytochrome c554 and c-prime LDP97_08910 PF00037 4Fe-4S binding domain LDP97_08910 PF13247 4Fe-4S dicluster domain LDP97_08915 PF03916 Polysulphide reductase, NrfD LDP97_08920 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LDP97_08920 PF01578 Cytochrome C assembly protein LDP97_08925 PF08534 Redoxin LDP97_08930 PF03918 Cytochrome C biogenesis protein LDP97_08935 PF00293 NUDIX domain LDP97_08940 PF00768 D-alanyl-D-alanine carboxypeptidase LDP97_08945 PF01212 Beta-eliminating lyase LDP97_08955 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LDP97_08960 PF01266 FAD dependent oxidoreductase LDP97_08970 PF07969 Amidohydrolase family LDP97_08975 PF00571 CBS domain LDP97_08975 PF00478 IMP dehydrogenase / GMP reductase domain LDP97_08985 PF08267 Cobalamin-independent synthase, N-terminal domain LDP97_08985 PF01717 Cobalamin-independent synthase, Catalytic domain LDP97_08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_08990 PF03466 LysR substrate binding domain LDP97_09000 PF07715 TonB-dependent Receptor Plug Domain LDP97_09000 PF00593 TonB dependent receptor LDP97_09005 PF12833 Helix-turn-helix domain LDP97_09010 PF00106 short chain dehydrogenase LDP97_09015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_09015 PF03466 LysR substrate binding domain LDP97_09020 PF13460 NAD(P)H-binding LDP97_09030 PF01053 Cys/Met metabolism PLP-dependent enzyme LDP97_09035 PF05193 Peptidase M16 inactive domain LDP97_09035 PF00675 Insulinase (Peptidase family M16) LDP97_09040 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDP97_09040 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDP97_09045 PF00893 Small Multidrug Resistance protein LDP97_09050 PF18381 YcaO cyclodehydratase C-terminal domain LDP97_09050 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LDP97_09055 PF01226 Formate/nitrite transporter LDP97_09060 PF01228 Glycine radical LDP97_09060 PF02901 Pyruvate formate lyase-like LDP97_09070 PF00202 Aminotransferase class-III LDP97_09075 PF00266 Aminotransferase class-V LDP97_09080 PF00392 Bacterial regulatory proteins, gntR family LDP97_09080 PF07702 UTRA domain LDP97_09090 PF00005 ABC transporter LDP97_09095 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_09100 PF01266 FAD dependent oxidoreductase LDP97_09105 PF03692 Putative zinc- or iron-chelating domain LDP97_09120 PF00549 CoA-ligase LDP97_09120 PF02629 CoA binding domain LDP97_09125 PF08442 ATP-grasp domain LDP97_09125 PF00549 CoA-ligase LDP97_09130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDP97_09130 PF00364 Biotin-requiring enzyme LDP97_09130 PF02817 e3 binding domain LDP97_09135 PF16078 2-oxoglutarate dehydrogenase N-terminus LDP97_09135 PF00676 Dehydrogenase E1 component LDP97_09135 PF16870 2-oxoglutarate dehydrogenase C-terminal LDP97_09135 PF02779 Transketolase, pyrimidine binding domain LDP97_09140 PF13085 2Fe-2S iron-sulfur cluster binding domain LDP97_09145 PF02910 Fumarate reductase flavoprotein C-term LDP97_09145 PF00890 FAD binding domain LDP97_09150 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LDP97_09155 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LDP97_09160 PF00285 Citrate synthase, C-terminal domain LDP97_09175 PF00109 Beta-ketoacyl synthase, N-terminal domain LDP97_09175 PF02801 Beta-ketoacyl synthase, C-terminal domain LDP97_09180 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LDP97_09180 PF01266 FAD dependent oxidoreductase LDP97_09190 PF03606 C4-dicarboxylate anaerobic carrier LDP97_09205 PF01863 Protein of unknown function DUF45 LDP97_09220 PF01197 Ribosomal protein L31 LDP97_09225 PF00444 Ribosomal protein L36 LDP97_09230 PF05726 Pirin C-terminal cupin domain LDP97_09230 PF02678 Pirin LDP97_09235 PF03466 LysR substrate binding domain LDP97_09235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_09240 PF12833 Helix-turn-helix domain LDP97_09240 PF02311 AraC-like ligand binding domain LDP97_09245 PF02653 Branched-chain amino acid transport system / permease component LDP97_09250 PF00005 ABC transporter LDP97_09255 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDP97_09260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDP97_09265 PF00596 Class II Aldolase and Adducin N-terminal domain LDP97_09270 PF02610 L-arabinose isomerase LDP97_09270 PF11762 L-arabinose isomerase C-terminal domain LDP97_09275 PF00929 Exonuclease LDP97_09275 PF08411 Exonuclease C-terminal LDP97_09290 PF03788 LrgA family LDP97_09295 PF04172 LrgB-like family LDP97_09300 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDP97_09300 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LDP97_09305 PF00501 AMP-binding enzyme LDP97_09310 PF08891 YfcL protein LDP97_09320 PF03741 Integral membrane protein TerC family LDP97_09325 PF00691 OmpA family LDP97_09330 PF00990 Diguanylate cyclase, GGDEF domain LDP97_09330 PF17152 Periplasmic sensor domain LDP97_09335 PF13689 YfiR/HmsC-like LDP97_09340 PF18024 Helix-turn-helix domain LDP97_09340 PF00158 Sigma-54 interaction domain LDP97_09350 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LDP97_09355 PF05128 Domain of unknown function (DUF697) LDP97_09360 PF04317 YcjX-like family, DUF463 LDP97_09370 PF06667 Phage shock protein B LDP97_09375 PF04012 PspA/IM30 family LDP97_09380 PF00158 Sigma-54 interaction domain LDP97_09380 PF02954 Bacterial regulatory protein, Fis family LDP97_09385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_09390 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_09395 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_09395 PF12911 N-terminal TM domain of oligopeptide transport permease C LDP97_09400 PF00005 ABC transporter LDP97_09400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_09405 PF00005 ABC transporter LDP97_09410 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LDP97_09415 PF00156 Phosphoribosyl transferase domain LDP97_09420 PF02674 Colicin V production protein LDP97_09425 PF02403 Seryl-tRNA synthetase N-terminal domain LDP97_09425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDP97_09430 PF00004 ATPase family associated with various cellular activities (AAA) LDP97_09430 PF16193 AAA C-terminal domain LDP97_09430 PF12002 MgsA AAA+ ATPase C terminal LDP97_09435 PF03548 Outer membrane lipoprotein carrier protein LolA LDP97_09440 PF01580 FtsK/SpoIIIE family LDP97_09440 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LDP97_09440 PF17854 FtsK alpha domain LDP97_09440 PF09397 Ftsk gamma domain LDP97_09445 PF01037 Lrp/AsnC ligand binding domain LDP97_09450 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDP97_09450 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDP97_09455 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_09460 PF00990 Diguanylate cyclase, GGDEF domain LDP97_09460 PF17158 Membrane-associated sensor, integral membrane domain LDP97_09465 PF05433 Glycine zipper 2TM domain LDP97_09470 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LDP97_09475 PF04377 Arginine-tRNA-protein transferase, C terminus LDP97_09475 PF04376 Arginine-tRNA-protein transferase, N terminus LDP97_09480 PF01176 Translation initiation factor 1A / IF-1 LDP97_09485 PF07724 AAA domain (Cdc48 subfamily) LDP97_09485 PF17871 AAA lid domain LDP97_09485 PF00004 ATPase family associated with various cellular activities (AAA) LDP97_09485 PF02861 Clp amino terminal domain, pathogenicity island component LDP97_09485 PF10431 C-terminal, D2-small domain, of ClpB protein LDP97_09490 PF02617 ATP-dependent Clp protease adaptor protein ClpS LDP97_09495 PF00313 'Cold-shock' DNA-binding domain LDP97_09500 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LDP97_09500 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LDP97_09540 PF00182 Chitinase class I LDP97_09545 PF04717 Type VI secretion system, phage-baseplate injector LDP97_09550 PF05638 Type VI secretion system effector, Hcp LDP97_09565 PF10722 Putative bacterial sensory transduction regulator LDP97_09575 PF00265 Thymidine kinase LDP97_09580 PF03553 Na+/H+ antiporter family LDP97_09585 PF00816 H-NS histone family LDP97_09590 PF01923 Cobalamin adenosyltransferase LDP97_09595 PF12843 Putative quorum-sensing-regulated virulence factor LDP97_09600 PF04055 Radical SAM superfamily LDP97_09605 PF06508 Queuosine biosynthesis protein QueC LDP97_09620 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LDP97_09625 PF18073 Rubredoxin metal binding domain LDP97_09635 PF00216 Bacterial DNA-binding protein LDP97_09640 PF00575 S1 RNA binding domain LDP97_09645 PF02224 Cytidylate kinase LDP97_09650 PF00925 GTP cyclohydrolase II LDP97_09655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_09655 PF03466 LysR substrate binding domain LDP97_09660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_09660 PF03466 LysR substrate binding domain LDP97_09665 PF07690 Major Facilitator Superfamily LDP97_09680 PF00881 Nitroreductase family LDP97_09685 PF00563 EAL domain LDP97_09685 PF00990 Diguanylate cyclase, GGDEF domain LDP97_09685 PF03707 Bacterial signalling protein N terminal repeat LDP97_09685 PF13188 PAS domain LDP97_09695 PF03466 LysR substrate binding domain LDP97_09695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_09700 PF00072 Response regulator receiver domain LDP97_09710 PF01212 Beta-eliminating lyase LDP97_09725 PF00248 Aldo/keto reductase family LDP97_09730 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LDP97_09740 PF03411 Penicillin-insensitive murein endopeptidase LDP97_09750 PF04536 TPM domain LDP97_09765 PF01618 MotA/TolQ/ExbB proton channel family LDP97_09770 PF00691 OmpA family LDP97_09770 PF13677 Membrane MotB of proton-channel complex MotA/MotB LDP97_09775 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LDP97_09780 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LDP97_09785 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LDP97_09785 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LDP97_09795 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LDP97_09795 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LDP97_09800 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LDP97_09800 PF00384 Molybdopterin oxidoreductase LDP97_09800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDP97_09805 PF00146 NADH dehydrogenase LDP97_09810 PF12838 4Fe-4S dicluster domain LDP97_09815 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LDP97_09820 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LDP97_09825 PF00361 Proton-conducting membrane transporter LDP97_09825 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LDP97_09830 PF00361 Proton-conducting membrane transporter LDP97_09835 PF00361 Proton-conducting membrane transporter LDP97_09845 PF02769 AIR synthase related protein, C-terminal domain LDP97_09845 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LDP97_09845 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LDP97_09850 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_09850 PF01464 Transglycosylase SLT domain LDP97_09855 PF07191 zinc-ribbons LDP97_09860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LDP97_09860 PF01926 50S ribosome-binding GTPase LDP97_09865 PF13360 PQQ-like domain LDP97_09870 PF09976 Tetratricopeptide repeat-like domain LDP97_09875 PF13393 Histidyl-tRNA synthetase LDP97_09875 PF03129 Anticodon binding domain LDP97_09880 PF04551 GcpE protein LDP97_09885 PF13464 Domain of unknown function (DUF4115) LDP97_09895 PF04055 Radical SAM superfamily LDP97_09900 PF00334 Nucleoside diphosphate kinase LDP97_09905 PF12404 Peptidase LDP97_09905 PF00883 Cytosol aminopeptidase family, catalytic domain LDP97_09910 PF12404 Peptidase LDP97_09910 PF00883 Cytosol aminopeptidase family, catalytic domain LDP97_09915 PF00111 2Fe-2S iron-sulfur cluster binding domain LDP97_09920 PF00012 Hsp70 protein LDP97_09925 PF07743 HSCB C-terminal oligomerisation domain LDP97_09930 PF01521 Iron-sulphur cluster biosynthesis LDP97_09935 PF01592 NifU-like N terminal domain LDP97_09940 PF00266 Aminotransferase class-V LDP97_09945 PF02082 Transcriptional regulator LDP97_09950 PF00588 SpoU rRNA Methylase family LDP97_09960 PF02036 SCP-2 sterol transfer family LDP97_09965 PF01136 Peptidase family U32 LDP97_09970 PF01136 Peptidase family U32 LDP97_09975 PF07719 Tetratricopeptide repeat LDP97_09975 PF13181 Tetratricopeptide repeat LDP97_09985 PF07549 SecD/SecF GG Motif LDP97_09985 PF02355 Protein export membrane protein LDP97_09990 PF02355 Protein export membrane protein LDP97_09990 PF13721 SecD export protein N-terminal TM region LDP97_09990 PF07549 SecD/SecF GG Motif LDP97_09995 PF02699 Preprotein translocase subunit LDP97_10000 PF01702 Queuine tRNA-ribosyltransferase LDP97_10005 PF02547 Queuosine biosynthesis protein LDP97_10010 PF00571 CBS domain LDP97_10015 PF10417 C-terminal domain of 1-Cys peroxiredoxin LDP97_10015 PF00578 AhpC/TSA family LDP97_10020 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_10020 PF13192 Thioredoxin domain LDP97_10025 PF07690 Major Facilitator Superfamily LDP97_10035 PF08241 Methyltransferase domain LDP97_10040 PF03960 ArsC family LDP97_10045 PF01758 Sodium Bile acid symporter family LDP97_10050 PF01022 Bacterial regulatory protein, arsR family LDP97_10055 PF02347 Glycine cleavage system P-protein LDP97_10060 PF01597 Glycine cleavage H-protein LDP97_10065 PF01571 Aminomethyltransferase folate-binding domain LDP97_10065 PF08669 Glycine cleavage T-protein C-terminal barrel domain LDP97_10070 PF01494 FAD binding domain LDP97_10075 PF01494 FAD binding domain LDP97_10080 PF03695 Uncharacterised protein family (UPF0149) LDP97_10085 PF05164 Cell division protein ZapA LDP97_10095 PF07690 Major Facilitator Superfamily LDP97_10100 PF00043 Glutathione S-transferase, C-terminal domain LDP97_10100 PF02798 Glutathione S-transferase, N-terminal domain LDP97_10110 PF00459 Inositol monophosphatase family LDP97_10115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_10115 PF12729 Four helix bundle sensory module for signal transduction LDP97_10115 PF00672 HAMP domain LDP97_10120 PF02535 ZIP Zinc transporter LDP97_10130 PF01048 Phosphorylase superfamily LDP97_10140 PF01497 Periplasmic binding protein LDP97_10145 PF02719 Polysaccharide biosynthesis protein LDP97_10150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDP97_10165 PF00202 Aminotransferase class-III LDP97_10175 PF03102 NeuB family LDP97_10175 PF08666 SAF domain LDP97_10200 PF02561 Flagellar protein FliS LDP97_10205 PF07196 Flagellin hook IN motif LDP97_10205 PF02465 Flagellar hook-associated protein 2 N-terminus LDP97_10205 PF07195 Flagellar hook-associated protein 2 C-terminus LDP97_10215 PF00700 Bacterial flagellin C-terminal helical region LDP97_10215 PF07196 Flagellin hook IN motif LDP97_10215 PF00669 Bacterial flagellin N-terminal helical region LDP97_10225 PF00669 Bacterial flagellin N-terminal helical region LDP97_10225 PF07196 Flagellin hook IN motif LDP97_10225 PF00700 Bacterial flagellin C-terminal helical region LDP97_10230 PF00669 Bacterial flagellin N-terminal helical region LDP97_10230 PF07196 Flagellin hook IN motif LDP97_10230 PF00700 Bacterial flagellin C-terminal helical region LDP97_10235 PF03458 UPF0126 domain LDP97_10245 PF02926 THUMP domain LDP97_10245 PF02568 Thiamine biosynthesis protein (ThiI) LDP97_10255 PF06832 Penicillin-Binding Protein C-terminus Family LDP97_10255 PF00912 Transglycosylase LDP97_10255 PF00905 Penicillin binding protein transpeptidase domain LDP97_10260 PF07678 A-macroglobulin TED domain LDP97_10260 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LDP97_10260 PF17962 Bacterial macroglobulin domain 6 LDP97_10260 PF00207 Alpha-2-macroglobulin family LDP97_10260 PF07703 Alpha-2-macroglobulin bait region domain LDP97_10260 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LDP97_10260 PF01835 MG2 domain LDP97_10260 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LDP97_10260 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LDP97_10265 PF07687 Peptidase dimerisation domain LDP97_10265 PF01546 Peptidase family M20/M25/M40 LDP97_10270 PF01594 AI-2E family transporter LDP97_10275 PF02321 Outer membrane efflux protein LDP97_10280 PF00529 HlyD membrane-fusion protein of T1SS LDP97_10280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_10295 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_10295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDP97_10300 PF03707 Bacterial signalling protein N terminal repeat LDP97_10300 PF00990 Diguanylate cyclase, GGDEF domain LDP97_10300 PF00563 EAL domain LDP97_10305 PF04055 Radical SAM superfamily LDP97_10315 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_10320 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_10325 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_10330 PF00005 ABC transporter LDP97_10335 PF03956 Lysine exporter LysO LDP97_10340 PF01979 Amidohydrolase family LDP97_10345 PF04336 Acyl carrier protein phosphodiesterase LDP97_10360 PF03960 ArsC family LDP97_10365 PF00578 AhpC/TSA family LDP97_10370 PF13181 Tetratricopeptide repeat LDP97_10370 PF01435 Peptidase family M48 LDP97_10375 PF01206 Sulfurtransferase TusA LDP97_10380 PF01594 AI-2E family transporter LDP97_10390 PF00561 alpha/beta hydrolase fold LDP97_10395 PF03976 Polyphosphate kinase 2 (PPK2) LDP97_10400 PF08402 TOBE domain LDP97_10400 PF00005 ABC transporter LDP97_10405 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_10410 PF14785 Maltose transport system permease protein MalF P2 domain LDP97_10410 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_10415 PF01547 Bacterial extracellular solute-binding protein LDP97_10420 PF04245 37-kD nucleoid-associated bacterial protein LDP97_10425 PF07208 Protein of unknown function (DUF1414) LDP97_10430 PF00884 Sulfatase LDP97_10430 PF11893 Domain of unknown function (DUF3413) LDP97_10440 PF00593 TonB dependent receptor LDP97_10440 PF07715 TonB-dependent Receptor Plug Domain LDP97_10445 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LDP97_10445 PF00326 Prolyl oligopeptidase family LDP97_10465 PF03974 Ecotin LDP97_10470 PF04219 Protein of unknown function, DUF LDP97_10475 PF03466 LysR substrate binding domain LDP97_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_10480 PF01817 Chorismate mutase type II LDP97_10480 PF02153 Prephenate dehydrogenase LDP97_10485 PF00793 DAHP synthetase I family LDP97_10490 PF03009 Glycerophosphoryl diester phosphodiesterase family LDP97_10495 PF01266 FAD dependent oxidoreductase LDP97_10495 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LDP97_10505 PF00455 DeoR C terminal sensor domain LDP97_10505 PF08220 DeoR-like helix-turn-helix domain LDP97_10510 PF07690 Major Facilitator Superfamily LDP97_10515 PF00230 Major intrinsic protein LDP97_10520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDP97_10520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDP97_10525 PF03466 LysR substrate binding domain LDP97_10525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_10545 PF00248 Aldo/keto reductase family LDP97_10550 PF07690 Major Facilitator Superfamily LDP97_10560 PF02322 Cytochrome bd terminal oxidase subunit II LDP97_10565 PF01654 Cytochrome bd terminal oxidase subunit I LDP97_10570 PF00392 Bacterial regulatory proteins, gntR family LDP97_10570 PF00155 Aminotransferase class I and II LDP97_10580 PF04391 Protein of unknown function (DUF533) LDP97_10595 PF10689 Protein of unknown function (DUF2496) LDP97_10605 PF07690 Major Facilitator Superfamily LDP97_10610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_10610 PF03466 LysR substrate binding domain LDP97_10620 PF07690 Major Facilitator Superfamily LDP97_10625 PF00849 RNA pseudouridylate synthase LDP97_10625 PF01479 S4 domain LDP97_10630 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LDP97_10630 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LDP97_10650 PF00271 Helicase conserved C-terminal domain LDP97_10650 PF04851 Type III restriction enzyme, res subunit LDP97_10655 PF00300 Histidine phosphatase superfamily (branch 1) LDP97_10660 PF13309 HTH domain LDP97_10660 PF08348 YheO-like PAS domain LDP97_10665 PF03313 Serine dehydratase alpha chain LDP97_10670 PF01042 Endoribonuclease L-PSP LDP97_10680 PF00672 HAMP domain LDP97_10680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_10695 PF17810 Arginine decarboxylase helical bundle domain LDP97_10695 PF17944 Arginine decarboxylase C-terminal helical extension LDP97_10695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDP97_10700 PF01546 Peptidase family M20/M25/M40 LDP97_10700 PF07687 Peptidase dimerisation domain LDP97_10725 PF04264 YceI-like domain LDP97_10730 PF03466 LysR substrate binding domain LDP97_10730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_10740 PF01268 Formate--tetrahydrofolate ligase LDP97_10745 PF00672 HAMP domain LDP97_10745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_10745 PF17200 Single Cache domain 2 LDP97_10750 PF01227 GTP cyclohydrolase I LDP97_10755 PF00994 Probable molybdopterin binding domain LDP97_10755 PF03454 MoeA C-terminal region (domain IV) LDP97_10755 PF03453 MoeA N-terminal region (domain I and II) LDP97_10760 PF00899 ThiF family LDP97_10765 PF00561 alpha/beta hydrolase fold LDP97_10770 PF00005 ABC transporter LDP97_10770 PF03459 TOBE domain LDP97_10775 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_10785 PF02391 MoaE protein LDP97_10790 PF02597 ThiS family LDP97_10795 PF01967 MoaC family LDP97_10800 PF00994 Probable molybdopterin binding domain LDP97_10805 PF03264 NapC/NirT cytochrome c family, N-terminal region LDP97_10810 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LDP97_10815 PF13237 4Fe-4S dicluster domain LDP97_10815 PF12801 4Fe-4S binding domain LDP97_10820 PF12838 4Fe-4S dicluster domain LDP97_10820 PF12800 4Fe-4S binding domain LDP97_10825 PF01568 Molydopterin dinucleotide binding domain LDP97_10825 PF10518 TAT (twin-arginine translocation) pathway signal sequence LDP97_10825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDP97_10825 PF00384 Molybdopterin oxidoreductase LDP97_10835 PF00037 4Fe-4S binding domain LDP97_10835 PF12800 4Fe-4S binding domain LDP97_10835 PF13187 4Fe-4S dicluster domain LDP97_10840 PF06463 Molybdenum Cofactor Synthesis C LDP97_10840 PF04055 Radical SAM superfamily LDP97_10845 PF00672 HAMP domain LDP97_10845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_10845 PF07730 Histidine kinase LDP97_10845 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LDP97_10850 PF00196 Bacterial regulatory proteins, luxR family LDP97_10850 PF00072 Response regulator receiver domain LDP97_10860 PF00072 Response regulator receiver domain LDP97_10860 PF01627 Hpt domain LDP97_10860 PF00512 His Kinase A (phospho-acceptor) domain LDP97_10860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_10860 PF17149 Periplasmic sensor domain found in signal transduction proteins LDP97_10860 PF00672 HAMP domain LDP97_10870 PF01933 Uncharacterised protein family UPF0052 LDP97_10880 PF13230 Glutamine amidotransferases class-II LDP97_10885 PF13580 SIS domain LDP97_10890 PF09317 Domain of unknown function (DUF1974) LDP97_10890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDP97_10890 PF02770 Acyl-CoA dehydrogenase, middle domain LDP97_10890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDP97_10895 PF11849 Domain of unknown function (DUF3369) LDP97_10905 PF00929 Exonuclease LDP97_10910 PF00075 RNase H LDP97_10915 PF08241 Methyltransferase domain LDP97_10920 PF16123 Hydroxyacylglutathione hydrolase C-terminus LDP97_10920 PF00753 Metallo-beta-lactamase superfamily LDP97_10925 PF01476 LysM domain LDP97_10925 PF01464 Transglycosylase SLT domain LDP97_10930 PF03372 Endonuclease/Exonuclease/phosphatase family LDP97_10940 PF03061 Thioesterase superfamily LDP97_10950 PF00356 Bacterial regulatory proteins, lacI family LDP97_10955 PF14718 Soluble lytic murein transglycosylase L domain LDP97_10955 PF01464 Transglycosylase SLT domain LDP97_10960 PF03707 Bacterial signalling protein N terminal repeat LDP97_10960 PF00563 EAL domain LDP97_10960 PF00990 Diguanylate cyclase, GGDEF domain LDP97_10965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LDP97_10985 PF04357 TamB, inner membrane protein subunit of TAM complex LDP97_10990 PF01103 Surface antigen LDP97_10990 PF07244 Surface antigen variable number repeat LDP97_10990 PF17243 POTRA domain TamA domain 1 LDP97_11005 PF01625 Peptide methionine sulfoxide reductase LDP97_11015 PF02627 Carboxymuconolactone decarboxylase family LDP97_11020 PF00403 Heavy-metal-associated domain LDP97_11020 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_11020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDP97_11025 PF13416 Bacterial extracellular solute-binding protein LDP97_11035 PF00005 ABC transporter LDP97_11040 PF01066 CDP-alcohol phosphatidyltransferase LDP97_11045 PF13406 Transglycosylase SLT domain LDP97_11050 PF01047 MarR family LDP97_11060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDP97_11060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDP97_11060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDP97_11060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDP97_11065 PF03925 SeqA protein C-terminal domain LDP97_11065 PF17206 SeqA protein N-terminal domain LDP97_11070 PF12697 Alpha/beta hydrolase family LDP97_11080 PF01402 Ribbon-helix-helix protein, copG family LDP97_11085 PF00258 Flavodoxin LDP97_11095 PF01475 Ferric uptake regulator family LDP97_11100 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDP97_11100 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LDP97_11110 PF02838 Glycosyl hydrolase family 20, domain 2 LDP97_11110 PF03173 Putative carbohydrate binding domain LDP97_11110 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LDP97_11110 PF00728 Glycosyl hydrolase family 20, catalytic domain LDP97_11115 PF02378 Phosphotransferase system, EIIC LDP97_11115 PF00367 phosphotransferase system, EIIB LDP97_11115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDP97_11120 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LDP97_11125 PF01979 Amidohydrolase family LDP97_11130 PF01047 MarR family LDP97_11130 PF00480 ROK family LDP97_11135 PF08019 Phosphoethanolamine transferase EptA/EptB LDP97_11135 PF00884 Sulfatase LDP97_11140 PF01709 Transcriptional regulator LDP97_11145 PF00152 tRNA synthetases class II (D, K and N) LDP97_11145 PF01336 OB-fold nucleic acid binding domain LDP97_11145 PF02938 GAD domain LDP97_11150 PF01904 Protein of unknown function DUF72 LDP97_11155 PF13649 Methyltransferase domain LDP97_11160 PF08003 Protein of unknown function (DUF1698) LDP97_11180 PF10417 C-terminal domain of 1-Cys peroxiredoxin LDP97_11180 PF00578 AhpC/TSA family LDP97_11185 PF03466 LysR substrate binding domain LDP97_11185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_11195 PF00877 NlpC/P60 family LDP97_11205 PF00171 Aldehyde dehydrogenase family LDP97_11210 PF00440 Bacterial regulatory proteins, tetR family LDP97_11210 PF08359 YsiA-like protein, C-terminal region LDP97_11220 PF00465 Iron-containing alcohol dehydrogenase LDP97_11230 PF00291 Pyridoxal-phosphate dependent enzyme LDP97_11250 PF01554 MatE LDP97_11270 PF01804 Penicillin amidase LDP97_11275 PF10371 Domain of unknown function LDP97_11275 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LDP97_11275 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LDP97_11275 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LDP97_11275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDP97_11280 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_11280 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LDP97_11280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LDP97_11285 PF00111 2Fe-2S iron-sulfur cluster binding domain LDP97_11285 PF03473 MOSC domain LDP97_11285 PF03476 MOSC N-terminal beta barrel domain LDP97_11285 PF00111 2Fe-2S iron-sulfur cluster binding domain LDP97_11285 PF03473 MOSC domain LDP97_11285 PF03476 MOSC N-terminal beta barrel domain LDP97_11290 PF13426 PAS domain LDP97_11290 PF08447 PAS fold LDP97_11290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_11295 PF01435 Peptidase family M48 LDP97_11305 PF12697 Alpha/beta hydrolase family LDP97_11305 PF08241 Methyltransferase domain LDP97_11310 PF00155 Aminotransferase class I and II LDP97_11315 PF06968 Biotin and Thiamin Synthesis associated domain LDP97_11315 PF04055 Radical SAM superfamily LDP97_11320 PF00202 Aminotransferase class-III LDP97_11335 PF00152 tRNA synthetases class II (D, K and N) LDP97_11335 PF01336 OB-fold nucleic acid binding domain LDP97_11340 PF03605 Anaerobic c4-dicarboxylate membrane transporter LDP97_11350 PF07687 Peptidase dimerisation domain LDP97_11350 PF01546 Peptidase family M20/M25/M40 LDP97_11355 PF03606 C4-dicarboxylate anaerobic carrier LDP97_11365 PF03466 LysR substrate binding domain LDP97_11365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_11370 PF03960 ArsC family LDP97_11375 PF07687 Peptidase dimerisation domain LDP97_11375 PF01546 Peptidase family M20/M25/M40 LDP97_11380 PF02557 D-alanyl-D-alanine carboxypeptidase LDP97_11390 PF03471 Transporter associated domain LDP97_11390 PF00999 Sodium/hydrogen exchanger family LDP97_11390 PF02080 TrkA-C domain LDP97_11400 PF02080 TrkA-C domain LDP97_11400 PF00999 Sodium/hydrogen exchanger family LDP97_11400 PF03471 Transporter associated domain LDP97_11410 PF01810 LysE type translocator LDP97_11415 PF00672 HAMP domain LDP97_11415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_11420 PF07509 Protein of unknown function (DUF1523) LDP97_11435 PF01156 Inosine-uridine preferring nucleoside hydrolase LDP97_11440 PF00849 RNA pseudouridylate synthase LDP97_11445 PF01048 Phosphorylase superfamily LDP97_11450 PF00465 Iron-containing alcohol dehydrogenase LDP97_11485 PF00437 Type II/IV secretion system protein LDP97_11500 PF00263 Bacterial type II and III secretion system protein LDP97_11500 PF04972 BON domain LDP97_11500 PF13629 Pilus formation protein N terminal region LDP97_11530 PF04355 SmpA / OmlA family LDP97_11535 PF13460 NAD(P)H-binding LDP97_11540 PF03658 RnfH family Ubiquitin LDP97_11545 PF03364 Polyketide cyclase / dehydrase and lipid transport LDP97_11550 PF01668 SmpB protein LDP97_11560 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LDP97_11560 PF00271 Helicase conserved C-terminal domain LDP97_11560 PF04851 Type III restriction enzyme, res subunit LDP97_11560 PF08463 EcoEI R protein C-terminal LDP97_11635 PF10124 Mu-like prophage major head subunit gpT LDP97_11640 PF10123 Mu-like prophage I protein LDP97_11660 PF06074 Protein of unknown function (DUF935) LDP97_11665 PF03237 Terminase-like family LDP97_11670 PF11985 Protein of unknown function (DUF3486) LDP97_11675 PF08461 Ribonuclease R winged-helix domain LDP97_11715 PF08765 Mor transcription activator family LDP97_11785 PF08463 EcoEI R protein C-terminal LDP97_11785 PF00271 Helicase conserved C-terminal domain LDP97_11785 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LDP97_11785 PF04851 Type III restriction enzyme, res subunit LDP97_11790 PF12161 HsdM N-terminal domain LDP97_11790 PF02384 N-6 DNA Methylase LDP97_11795 PF01420 Type I restriction modification DNA specificity domain LDP97_11825 PF03466 LysR substrate binding domain LDP97_11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_11830 PF02447 GntP family permease LDP97_11835 PF00291 Pyridoxal-phosphate dependent enzyme LDP97_11845 PF00180 Isocitrate/isopropylmalate dehydrogenase LDP97_11850 PF12833 Helix-turn-helix domain LDP97_11855 PF01238 Phosphomannose isomerase type I LDP97_11880 PF00155 Aminotransferase class I and II LDP97_11885 PF02378 Phosphotransferase system, EIIC LDP97_11885 PF00367 phosphotransferase system, EIIB LDP97_11890 PF00356 Bacterial regulatory proteins, lacI family LDP97_11890 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDP97_11905 PF00583 Acetyltransferase (GNAT) family LDP97_11925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDP97_11925 PF02378 Phosphotransferase system, EIIC LDP97_11925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDP97_11930 PF07690 Major Facilitator Superfamily LDP97_11935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDP97_11945 PF00849 RNA pseudouridylate synthase LDP97_11950 PF00293 NUDIX domain LDP97_11960 PF04356 Protein of unknown function (DUF489) LDP97_11965 PF08328 Adenylosuccinate lyase C-terminal LDP97_11965 PF00206 Lyase LDP97_11970 PF08007 Cupin superfamily protein LDP97_11980 PF13508 Acetyltransferase (GNAT) domain LDP97_11990 PF02798 Glutathione S-transferase, N-terminal domain LDP97_11995 PF01243 Pyridoxamine 5'-phosphate oxidase LDP97_11995 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LDP97_12010 PF01029 NusB family LDP97_12010 PF01189 16S rRNA methyltransferase RsmB/F LDP97_12015 PF00462 Glutaredoxin LDP97_12020 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LDP97_12020 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LDP97_12025 PF04333 MlaA lipoprotein LDP97_12030 PF03918 Cytochrome C biogenesis protein LDP97_12035 PF03918 Cytochrome C biogenesis protein LDP97_12040 PF08534 Redoxin LDP97_12045 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LDP97_12045 PF01578 Cytochrome C assembly protein LDP97_12050 PF03100 CcmE LDP97_12055 PF04995 Heme exporter protein D (CcmD) LDP97_12060 PF01578 Cytochrome C assembly protein LDP97_12065 PF03379 CcmB protein LDP97_12070 PF00005 ABC transporter LDP97_12080 PF01584 CheW-like domain LDP97_12090 PF13614 AAA domain LDP97_12095 PF00691 OmpA family LDP97_12095 PF13677 Membrane MotB of proton-channel complex MotA/MotB LDP97_12100 PF01618 MotA/TolQ/ExbB proton channel family LDP97_12105 PF00072 Response regulator receiver domain LDP97_12105 PF01339 CheB methylesterase LDP97_12110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_12110 PF02895 Signal transducing histidine kinase, homodimeric domain LDP97_12110 PF00072 Response regulator receiver domain LDP97_12110 PF01627 Hpt domain LDP97_12110 PF01584 CheW-like domain LDP97_12115 PF04344 Chemotaxis phosphatase, CheZ LDP97_12120 PF00072 Response regulator receiver domain LDP97_12125 PF04542 Sigma-70 region 2 LDP97_12125 PF04539 Sigma-70 region 3 LDP97_12125 PF04545 Sigma-70, region 4 LDP97_12130 PF10609 NUBPL iron-transfer P-loop NTPase LDP97_12135 PF00448 SRP54-type protein, GTPase domain LDP97_12140 PF00771 FHIPEP family LDP97_12145 PF01312 FlhB HrpN YscU SpaS Family LDP97_12150 PF01311 Bacterial export proteins, family 1 LDP97_12155 PF01313 Bacterial export proteins, family 3 LDP97_12160 PF00813 FliP family LDP97_12165 PF04347 Flagellar biosynthesis protein, FliO LDP97_12170 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDP97_12175 PF02154 Flagellar motor switch protein FliM LDP97_12175 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDP97_12195 PF18269 T3SS EscN ATPase C-terminal domain LDP97_12195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDP97_12205 PF14841 FliG middle domain LDP97_12205 PF01706 FliG C-terminal domain LDP97_12205 PF14842 FliG N-terminal domain LDP97_12210 PF08345 Flagellar M-ring protein C-terminal LDP97_12210 PF01514 Secretory protein of YscJ/FliF family LDP97_12215 PF02049 Flagellar hook-basal body complex protein FliE LDP97_12225 PF00072 Response regulator receiver domain LDP97_12230 PF04055 Radical SAM superfamily LDP97_12230 PF18693 TRAM domain LDP97_12230 PF00919 Uncharacterized protein family UPF0004 LDP97_12240 PF16671 Actin cross-linking domain LDP97_12240 PF12146 Serine aminopeptidase, S33 LDP97_12240 PF11647 Membrane Localization Domain LDP97_12240 PF11713 Peptidase C80 family LDP97_12240 PF07634 RtxA repeat LDP97_12245 PF02794 RTX toxin acyltransferase family LDP97_12255 PF03412 Peptidase C39 family LDP97_12255 PF00005 ABC transporter LDP97_12255 PF00664 ABC transporter transmembrane region LDP97_12265 PF00664 ABC transporter transmembrane region LDP97_12265 PF00005 ABC transporter LDP97_12265 PF03412 Peptidase C39 family LDP97_12270 PF00072 Response regulator receiver domain LDP97_12270 PF00486 Transcriptional regulatory protein, C terminal LDP97_12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_12280 PF02685 Glucokinase LDP97_12285 PF01418 Helix-turn-helix domain, rpiR family LDP97_12285 PF01380 SIS domain LDP97_12290 PF00224 Pyruvate kinase, barrel domain LDP97_12290 PF02887 Pyruvate kinase, alpha/beta domain LDP97_12300 PF00873 AcrB/AcrD/AcrF family LDP97_12305 PF02770 Acyl-CoA dehydrogenase, middle domain LDP97_12305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDP97_12305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDP97_12305 PF09317 Domain of unknown function (DUF1974) LDP97_12310 PF00440 Bacterial regulatory proteins, tetR family LDP97_12360 PF00384 Molybdopterin oxidoreductase LDP97_12365 PF02634 FdhD/NarQ family LDP97_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_12370 PF03466 LysR substrate binding domain LDP97_12390 PF00936 BMC domain LDP97_12395 PF00936 BMC domain LDP97_12400 PF00936 BMC domain LDP97_12405 PF00171 Aldehyde dehydrogenase family LDP97_12405 PF00465 Iron-containing alcohol dehydrogenase LDP97_12415 PF00465 Iron-containing alcohol dehydrogenase LDP97_12415 PF00171 Aldehyde dehydrogenase family LDP97_12420 PF01228 Glycine radical LDP97_12420 PF02901 Pyruvate formate lyase-like LDP97_12425 PF13187 4Fe-4S dicluster domain LDP97_12425 PF04055 Radical SAM superfamily LDP97_12430 PF00936 BMC domain LDP97_12435 PF06130 Phosphate propanoyltransferase LDP97_12445 PF00893 Small Multidrug Resistance protein LDP97_12450 PF00893 Small Multidrug Resistance protein LDP97_12475 PF09264 Vibrio cholerae sialidase, lectin insertion LDP97_12475 PF13088 BNR repeat-like domain LDP97_12480 PF04074 YhcH/YjgK/YiaL LDP97_12485 PF00474 Sodium:solute symporter family LDP97_12490 PF00480 ROK family LDP97_12495 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LDP97_12500 PF01418 Helix-turn-helix domain, rpiR family LDP97_12500 PF01380 SIS domain LDP97_12505 PF00701 Dihydrodipicolinate synthetase family LDP97_12510 PF00141 Peroxidase LDP97_12515 PF08220 DeoR-like helix-turn-helix domain LDP97_12515 PF00455 DeoR C terminal sensor domain LDP97_12520 PF07690 Major Facilitator Superfamily LDP97_12525 PF07881 L-fucose isomerase, first N-terminal domain LDP97_12525 PF02952 L-fucose isomerase, C-terminal domain LDP97_12525 PF07882 L-fucose isomerase, second N-terminal domain LDP97_12530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDP97_12530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDP97_12540 PF05025 RbsD / FucU transport protein family LDP97_12545 PF00465 Iron-containing alcohol dehydrogenase LDP97_12550 PF00005 ABC transporter LDP97_12550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDP97_12555 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_12555 PF12911 N-terminal TM domain of oligopeptide transport permease C LDP97_12560 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_12565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_12580 PF01476 LysM domain LDP97_12580 PF03734 L,D-transpeptidase catalytic domain LDP97_12580 PF17969 L,D-transpeptidase C-terminal domain LDP97_12590 PF01575 MaoC like domain LDP97_12595 PF05971 RNA methyltransferase LDP97_12600 PF00877 NlpC/P60 family LDP97_12605 PF01648 4'-phosphopantetheinyl transferase superfamily LDP97_12610 PF00085 Thioredoxin LDP97_12620 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LDP97_12625 PF01842 ACT domain LDP97_12625 PF00551 Formyl transferase LDP97_12635 PF13091 PLD-like domain LDP97_12635 PF13396 Phospholipase_D-nuclease N-terminal LDP97_12650 PF01551 Peptidase family M23 LDP97_12655 PF00128 Alpha amylase, catalytic domain LDP97_12660 PF01464 Transglycosylase SLT domain LDP97_12660 PF01551 Peptidase family M23 LDP97_12660 PF10145 Phage-related minor tail protein LDP97_12665 PF00230 Major intrinsic protein LDP97_12670 PF02075 Crossover junction endodeoxyribonuclease RuvC LDP97_12675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDP97_12700 PF11842 Domain of unknown function (DUF3362) LDP97_12700 PF04055 Radical SAM superfamily LDP97_12700 PF08497 Radical SAM N-terminal LDP97_12710 PF00873 AcrB/AcrD/AcrF family LDP97_12715 PF00529 HlyD membrane-fusion protein of T1SS LDP97_12715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_12720 PF00990 Diguanylate cyclase, GGDEF domain LDP97_12725 PF01734 Patatin-like phospholipase LDP97_12730 PF00209 Sodium:neurotransmitter symporter family LDP97_12745 PF00691 OmpA family LDP97_12745 PF01389 OmpA-like transmembrane domain LDP97_12750 PF00691 OmpA family LDP97_12750 PF01389 OmpA-like transmembrane domain LDP97_12755 PF01389 OmpA-like transmembrane domain LDP97_12755 PF00691 OmpA family LDP97_12760 PF00390 Malic enzyme, N-terminal domain LDP97_12760 PF03949 Malic enzyme, NAD binding domain LDP97_12765 PF12833 Helix-turn-helix domain LDP97_12770 PF01554 MatE LDP97_12775 PF10692 Protein of unknown function (DUF2498) LDP97_12780 PF00990 Diguanylate cyclase, GGDEF domain LDP97_12780 PF00072 Response regulator receiver domain LDP97_12785 PF00860 Permease family LDP97_12795 PF01235 Sodium:alanine symporter family LDP97_12800 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDP97_12800 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LDP97_12805 PF01699 Sodium/calcium exchanger protein LDP97_12810 PF08534 Redoxin LDP97_12820 PF00293 NUDIX domain LDP97_12840 PF00005 ABC transporter LDP97_12845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDP97_12845 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDP97_12850 PF03932 CutC family LDP97_12855 PF00480 ROK family LDP97_12865 PF01435 Peptidase family M48 LDP97_12870 PF12849 PBP superfamily domain LDP97_12875 PF11808 Phosphate regulon sensor protein PhoR LDP97_12875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_12875 PF00512 His Kinase A (phospho-acceptor) domain LDP97_12875 PF00989 PAS fold LDP97_12880 PF00072 Response regulator receiver domain LDP97_12880 PF00486 Transcriptional regulatory protein, C terminal LDP97_12885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDP97_12890 PF02515 CoA-transferase family III LDP97_12895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDP97_12895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDP97_12895 PF02770 Acyl-CoA dehydrogenase, middle domain LDP97_12900 PF01590 GAF domain LDP97_12900 PF02954 Bacterial regulatory protein, Fis family LDP97_12900 PF00158 Sigma-54 interaction domain LDP97_12905 PF00171 Aldehyde dehydrogenase family LDP97_12915 PF00892 EamA-like transporter family LDP97_12920 PF12431 Transcriptional regulator LDP97_12920 PF00072 Response regulator receiver domain LDP97_12925 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LDP97_12925 PF17203 Single cache domain 3 LDP97_12925 PF00989 PAS fold LDP97_12925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_12930 PF00390 Malic enzyme, N-terminal domain LDP97_12930 PF03949 Malic enzyme, NAD binding domain LDP97_12935 PF03390 2-hydroxycarboxylate transporter family LDP97_12945 PF01047 MarR family LDP97_12950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_12950 PF00529 HlyD membrane-fusion protein of T1SS LDP97_12975 PF01679 Proteolipid membrane potential modulator LDP97_12985 PF13597 Anaerobic ribonucleoside-triphosphate reductase LDP97_12985 PF03477 ATP cone domain LDP97_12995 PF03120 NAD-dependent DNA ligase OB-fold domain LDP97_12995 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LDP97_12995 PF12826 Helix-hairpin-helix motif LDP97_12995 PF01653 NAD-dependent DNA ligase adenylation domain LDP97_12995 PF00533 BRCA1 C Terminus (BRCT) domain LDP97_13000 PF04354 ZipA, C-terminal FtsZ-binding domain LDP97_13005 PF06470 SMC proteins Flexible Hinge Domain LDP97_13005 PF02463 RecF/RecN/SMC N terminal domain LDP97_13015 PF03458 UPF0126 domain LDP97_13025 PF05951 Bacterial protein of unknown function (DUF882) LDP97_13030 PF01471 Putative peptidoglycan binding domain LDP97_13030 PF03734 L,D-transpeptidase catalytic domain LDP97_13045 PF00535 Glycosyl transferase family 2 LDP97_13060 PF00128 Alpha amylase, catalytic domain LDP97_13070 PF00196 Bacterial regulatory proteins, luxR family LDP97_13070 PF00072 Response regulator receiver domain LDP97_13090 PF02254 TrkA-N domain LDP97_13090 PF00999 Sodium/hydrogen exchanger family LDP97_13090 PF02080 TrkA-C domain LDP97_13095 PF00990 Diguanylate cyclase, GGDEF domain LDP97_13100 PF11734 TilS substrate C-terminal domain LDP97_13100 PF09179 TilS substrate binding domain LDP97_13100 PF01171 PP-loop family LDP97_13105 PF01431 Peptidase family M13 LDP97_13105 PF05649 Peptidase family M13 LDP97_13115 PF16326 ABC transporter C-terminal domain LDP97_13115 PF00005 ABC transporter LDP97_13115 PF12848 ABC transporter LDP97_13120 PF13302 Acetyltransferase (GNAT) domain LDP97_13125 PF13520 Amino acid permease LDP97_13130 PF03466 LysR substrate binding domain LDP97_13130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_13135 PF12706 Beta-lactamase superfamily domain LDP97_13145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_13145 PF03466 LysR substrate binding domain LDP97_13155 PF08543 Phosphomethylpyrimidine kinase LDP97_13160 PF01276 Orn/Lys/Arg decarboxylase, major domain LDP97_13160 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LDP97_13160 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LDP97_13165 PF13520 Amino acid permease LDP97_13170 PF18500 CadC C-terminal domain 1 LDP97_13170 PF00486 Transcriptional regulatory protein, C terminal LDP97_13175 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LDP97_13180 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDP97_13180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDP97_13180 PF14579 Helix-hairpin-helix motif LDP97_13180 PF02811 PHP domain LDP97_13180 PF01336 OB-fold nucleic acid binding domain LDP97_13185 PF01351 Ribonuclease HII LDP97_13190 PF02684 Lipid-A-disaccharide synthetase LDP97_13195 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_13195 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LDP97_13200 PF07977 FabA-like domain LDP97_13205 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_13205 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LDP97_13210 PF03938 Outer membrane protein (OmpH-like) LDP97_13215 PF01103 Surface antigen LDP97_13215 PF07244 Surface antigen variable number repeat LDP97_13220 PF17820 PDZ domain LDP97_13220 PF02163 Peptidase family M50 LDP97_13225 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LDP97_13225 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LDP97_13225 PF13288 DXP reductoisomerase C-terminal domain LDP97_13235 PF01255 Putative undecaprenyl diphosphate synthase LDP97_13240 PF01765 Ribosome recycling factor LDP97_13245 PF00696 Amino acid kinase family LDP97_13250 PF00889 Elongation factor TS LDP97_13255 PF00318 Ribosomal protein S2 LDP97_13260 PF00557 Metallopeptidase family M24 LDP97_13265 PF08335 GlnD PII-uridylyltransferase LDP97_13265 PF01842 ACT domain LDP97_13265 PF01909 Nucleotidyltransferase domain LDP97_13265 PF01966 HD domain LDP97_13270 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_13270 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LDP97_13270 PF14602 Hexapeptide repeat of succinyl-transferase LDP97_13275 PF11944 Protein of unknown function (DUF3461) LDP97_13280 PF00367 phosphotransferase system, EIIB LDP97_13280 PF02378 Phosphotransferase system, EIIC LDP97_13285 PF07148 Maltose operon periplasmic protein precursor (MalM) LDP97_13290 PF02264 LamB porin LDP97_13295 PF00258 Flavodoxin LDP97_13300 PF00849 RNA pseudouridylate synthase LDP97_13305 PF04287 tRNA pseudouridine synthase C LDP97_13330 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LDP97_13335 PF07348 Syd protein (SUKH-2) LDP97_13340 PF14489 QueF-like protein LDP97_13340 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LDP97_13350 PF00990 Diguanylate cyclase, GGDEF domain LDP97_13355 PF11892 Domain of unknown function (DUF3412) LDP97_13355 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LDP97_13355 PF03641 Possible lysine decarboxylase LDP97_13360 PF01367 5'-3' exonuclease, C-terminal SAM fold LDP97_13360 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDP97_13365 PF00180 Isocitrate/isopropylmalate dehydrogenase LDP97_13365 PF18324 Hypothetical protein TT1725 LDP97_13375 PF01728 FtsJ-like methyltransferase LDP97_13375 PF18125 RlmM ferredoxin-like domain LDP97_13380 PF04241 Protein of unknown function (DUF423) LDP97_13390 PF03466 LysR substrate binding domain LDP97_13390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_13395 PF00672 HAMP domain LDP97_13395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_13400 PF00817 impB/mucB/samB family LDP97_13400 PF11799 impB/mucB/samB family C-terminal domain LDP97_13400 PF11798 IMS family HHH motif LDP97_13415 PF02424 ApbE family LDP97_13420 PF00175 Oxidoreductase NAD-binding domain LDP97_13420 PF00970 Oxidoreductase FAD-binding domain LDP97_13420 PF00111 2Fe-2S iron-sulfur cluster binding domain LDP97_13425 PF02508 Rnf-Nqr subunit, membrane protein LDP97_13430 PF02508 Rnf-Nqr subunit, membrane protein LDP97_13435 PF04205 FMN-binding domain LDP97_13440 PF03116 NQR2, RnfD, RnfE family LDP97_13445 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LDP97_13445 PF11973 NQRA C-terminal domain LDP97_13450 PF01722 BolA-like protein LDP97_13455 PF05175 Methyltransferase small domain LDP97_13465 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDP97_13475 PF07690 Major Facilitator Superfamily LDP97_13480 PF03502 Nucleoside-specific channel-forming protein, Tsx LDP97_13485 PF04461 Protein of unknown function (DUF520) LDP97_13490 PF02558 Ketopantoate reductase PanE/ApbA LDP97_13490 PF08546 Ketopantoate reductase PanE/ApbA C terminal LDP97_13495 PF01965 DJ-1/PfpI family LDP97_13500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDP97_13500 PF00205 Thiamine pyrophosphate enzyme, central domain LDP97_13500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDP97_13505 PF03306 Alpha-acetolactate decarboxylase LDP97_13510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_13510 PF03466 LysR substrate binding domain LDP97_13530 PF03496 ADP-ribosyltransferase exoenzyme LDP97_13530 PF03534 Salmonella virulence plasmid 65kDa B protein LDP97_13545 PF05638 Type VI secretion system effector, Hcp LDP97_13550 PF03472 Autoinducer binding domain LDP97_13550 PF00196 Bacterial regulatory proteins, luxR family LDP97_13560 PF06965 Na+/H+ antiporter 1 LDP97_13560 PF13462 Thioredoxin LDP97_13565 PF16363 GDP-mannose 4,6 dehydratase LDP97_13570 PF00042 Globin LDP97_13570 PF00175 Oxidoreductase NAD-binding domain LDP97_13570 PF00970 Oxidoreductase FAD-binding domain LDP97_13575 PF03063 Prismane/CO dehydrogenase family LDP97_13580 PF00210 Ferritin-like domain LDP97_13620 PF00106 short chain dehydrogenase LDP97_13630 PF00875 DNA photolyase LDP97_13630 PF03441 FAD binding domain of DNA photolyase LDP97_13635 PF13411 MerR HTH family regulatory protein LDP97_13640 PF08349 Protein of unknown function (DUF1722) LDP97_13670 PF01817 Chorismate mutase type II LDP97_13670 PF00800 Prephenate dehydratase LDP97_13700 PF09588 YqaJ-like viral recombinase domain LDP97_13745 PF04002 RadC-like JAB domain LDP97_13755 PF04055 Radical SAM superfamily LDP97_13760 PF06508 Queuosine biosynthesis protein QueC LDP97_13785 PF01242 6-pyruvoyl tetrahydropterin synthase LDP97_13800 PF00270 DEAD/DEAH box helicase LDP97_13800 PF00271 Helicase conserved C-terminal domain LDP97_13800 PF09382 RQC domain LDP97_13800 PF16124 RecQ zinc-binding LDP97_13800 PF00570 HRDC domain LDP97_13820 PF09382 RQC domain LDP97_13820 PF00570 HRDC domain LDP97_13820 PF00271 Helicase conserved C-terminal domain LDP97_13820 PF16124 RecQ zinc-binding LDP97_13820 PF00270 DEAD/DEAH box helicase LDP97_13825 PF12137 RNA polymerase recycling family C-terminal LDP97_13825 PF00176 SNF2 family N-terminal domain LDP97_13825 PF18339 RapA N-terminal Tudor like domain 1 LDP97_13825 PF18337 RapA N-terminal Tudor like domain LDP97_13825 PF00271 Helicase conserved C-terminal domain LDP97_13830 PF00717 Peptidase S24-like LDP97_13850 PF07715 TonB-dependent Receptor Plug Domain LDP97_13850 PF00593 TonB dependent receptor LDP97_13870 PF00005 ABC transporter LDP97_13875 PF00158 Sigma-54 interaction domain LDP97_13875 PF01590 GAF domain LDP97_13895 PF01032 FecCD transport family LDP97_13900 PF00005 ABC transporter LDP97_13910 PF13649 Methyltransferase domain LDP97_13950 PF03976 Polyphosphate kinase 2 (PPK2) LDP97_13955 PF01740 STAS domain LDP97_13955 PF00916 Sulfate permease family LDP97_13960 PF07995 Glucose / Sorbosone dehydrogenase LDP97_13970 PF00672 HAMP domain LDP97_13970 PF02743 Cache domain LDP97_13970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_13975 PF03573 outer membrane porin, OprD family LDP97_13980 PF00106 short chain dehydrogenase LDP97_14005 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LDP97_14015 PF06029 AlkA N-terminal domain LDP97_14015 PF02805 Metal binding domain of Ada LDP97_14015 PF00730 HhH-GPD superfamily base excision DNA repair protein LDP97_14015 PF12833 Helix-turn-helix domain LDP97_14020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDP97_14020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDP97_14030 PF12392 Collagenase LDP97_14030 PF01136 Peptidase family U32 LDP97_14035 PF01810 LysE type translocator LDP97_14040 PF03466 LysR substrate binding domain LDP97_14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_14045 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDP97_14045 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDP97_14050 PF02743 Cache domain LDP97_14050 PF00672 HAMP domain LDP97_14050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_14055 PF00072 Response regulator receiver domain LDP97_14065 PF01584 CheW-like domain LDP97_14065 PF02895 Signal transducing histidine kinase, homodimeric domain LDP97_14065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_14065 PF01627 Hpt domain LDP97_14065 PF07194 P2 response regulator binding domain LDP97_14070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_14070 PF12729 Four helix bundle sensory module for signal transduction LDP97_14070 PF00672 HAMP domain LDP97_14075 PF01584 CheW-like domain LDP97_14080 PF00672 HAMP domain LDP97_14080 PF02203 Tar ligand binding domain homologue LDP97_14080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_14085 PF01739 CheR methyltransferase, SAM binding domain LDP97_14085 PF03705 CheR methyltransferase, all-alpha domain LDP97_14090 PF03975 CheD chemotactic sensory transduction LDP97_14095 PF01339 CheB methylesterase LDP97_14095 PF00072 Response regulator receiver domain LDP97_14100 PF00266 Aminotransferase class-V LDP97_14120 PF00563 EAL domain LDP97_14120 PF01590 GAF domain LDP97_14120 PF00990 Diguanylate cyclase, GGDEF domain LDP97_14120 PF00989 PAS fold LDP97_14125 PF01136 Peptidase family U32 LDP97_14125 PF16325 Peptidase family U32 C-terminal domain LDP97_14130 PF12838 4Fe-4S dicluster domain LDP97_14140 PF01168 Alanine racemase, N-terminal domain LDP97_14140 PF00842 Alanine racemase, C-terminal domain LDP97_14145 PF03796 DnaB-like helicase C terminal domain LDP97_14145 PF00772 DnaB-like helicase N terminal domain LDP97_14155 PF12792 CSS motif domain associated with EAL LDP97_14155 PF00563 EAL domain LDP97_14160 PF02872 5'-nucleotidase, C-terminal domain LDP97_14160 PF00149 Calcineurin-like phosphoesterase LDP97_14180 PF02954 Bacterial regulatory protein, Fis family LDP97_14180 PF00072 Response regulator receiver domain LDP97_14180 PF00158 Sigma-54 interaction domain LDP97_14185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDP97_14185 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDP97_14195 PF04102 SlyX LDP97_14200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDP97_14205 PF09526 Probable metal-binding protein (DUF2387) LDP97_14215 PF00072 Response regulator receiver domain LDP97_14215 PF01584 CheW-like domain LDP97_14220 PF00561 alpha/beta hydrolase fold LDP97_14225 PF00563 EAL domain LDP97_14225 PF00990 Diguanylate cyclase, GGDEF domain LDP97_14225 PF00360 Phytochrome region LDP97_14225 PF01590 GAF domain LDP97_14230 PF06794 Uncharacterised protein family (UPF0270) LDP97_14235 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDP97_14235 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDP97_14235 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDP97_14240 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDP97_14245 PF00535 Glycosyl transferase family 2 LDP97_14250 PF01370 NAD dependent epimerase/dehydratase family LDP97_14250 PF02911 Formyl transferase, C-terminal domain LDP97_14250 PF00551 Formyl transferase LDP97_14255 PF01522 Polysaccharide deacetylase LDP97_14260 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LDP97_14265 PF00892 EamA-like transporter family LDP97_14270 PF00893 Small Multidrug Resistance protein LDP97_14275 PF00485 Phosphoribulokinase / Uridine kinase family LDP97_14290 PF02566 OsmC-like protein LDP97_14295 PF00027 Cyclic nucleotide-binding domain LDP97_14295 PF13545 Crp-like helix-turn-helix domain LDP97_14300 PF13847 Methyltransferase domain LDP97_14305 PF18416 N-acetylglucosamine binding protein domain 2 LDP97_14305 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LDP97_14310 PF17945 Beta/Gamma crystallin LDP97_14310 PF12561 ToxR activated gene A lipoprotein domain LDP97_14315 PF08329 Chitinase A, N-terminal domain LDP97_14315 PF00704 Glycosyl hydrolases family 18 LDP97_14320 PF00989 PAS fold LDP97_14320 PF00512 His Kinase A (phospho-acceptor) domain LDP97_14320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_14330 PF13443 Cro/C1-type HTH DNA-binding domain LDP97_14335 PF12832 MFS_1 like family LDP97_14340 PF07715 TonB-dependent Receptor Plug Domain LDP97_14340 PF00593 TonB dependent receptor LDP97_14360 PF01243 Pyridoxamine 5'-phosphate oxidase LDP97_14365 PF06228 Haem utilisation ChuX/HutX LDP97_14375 PF01032 FecCD transport family LDP97_14380 PF00005 ABC transporter LDP97_14390 PF01370 NAD dependent epimerase/dehydratase family LDP97_14400 PF01791 DeoC/LacD family aldolase LDP97_14405 PF01773 Na+ dependent nucleoside transporter N-terminus LDP97_14405 PF07662 Na+ dependent nucleoside transporter C-terminus LDP97_14405 PF07670 Nucleoside recognition LDP97_14410 PF01048 Phosphorylase superfamily LDP97_14415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_14415 PF03466 LysR substrate binding domain LDP97_14430 PF01464 Transglycosylase SLT domain LDP97_14435 PF01048 Phosphorylase superfamily LDP97_14530 PF01343 Peptidase family S49 LDP97_14545 PF03354 Phage Terminase LDP97_14595 PF00004 ATPase family associated with various cellular activities (AAA) LDP97_14600 PF01555 DNA methylase LDP97_14605 PF10122 Mu-like prophage protein Com LDP97_14695 PF01381 Helix-turn-helix LDP97_14695 PF00717 Peptidase S24-like LDP97_14735 PF00589 Phage integrase family LDP97_14735 PF12167 Arm DNA-binding domain LDP97_14740 PF00005 ABC transporter LDP97_14740 PF12848 ABC transporter LDP97_14750 PF00860 Permease family LDP97_14755 PF00226 DnaJ domain LDP97_14755 PF05099 Tellurite resistance protein TerB LDP97_14760 PF00483 Nucleotidyl transferase LDP97_14765 PF01636 Phosphotransferase enzyme family LDP97_14770 PF04453 LPS transport system D LDP97_14770 PF03968 OstA-like protein LDP97_14775 PF09312 SurA N-terminal domain LDP97_14775 PF00639 PPIC-type PPIASE domain LDP97_14780 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LDP97_14785 PF00398 Ribosomal RNA adenine dimethylase LDP97_14790 PF04379 ApaG domain LDP97_14795 PF00149 Calcineurin-like phosphoesterase LDP97_14805 PF00296 Luciferase-like monooxygenase LDP97_14825 PF13193 AMP-binding enzyme C-terminal domain LDP97_14825 PF00501 AMP-binding enzyme LDP97_14830 PF07670 Nucleoside recognition LDP97_14835 PF01926 50S ribosome-binding GTPase LDP97_14835 PF01018 GTP1/OBG LDP97_14840 PF01016 Ribosomal L27 protein LDP97_14845 PF00829 Ribosomal prokaryotic L21 protein LDP97_14850 PF00348 Polyprenyl synthetase LDP97_14855 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LDP97_14860 PF01145 SPFH domain / Band 7 family LDP97_14865 PF12221 Bacterial membrane protein N terminal LDP97_14865 PF01145 SPFH domain / Band 7 family LDP97_14870 PF13167 GTP-binding GTPase N-terminal LDP97_14870 PF01926 50S ribosome-binding GTPase LDP97_14870 PF16360 GTP-binding GTPase Middle Region LDP97_14875 PF17209 Hfq protein LDP97_14885 PF01119 DNA mismatch repair protein, C-terminal domain LDP97_14885 PF08676 MutL C terminal dimerisation domain LDP97_14890 PF01520 N-acetylmuramoyl-L-alanine amidase LDP97_14895 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LDP97_14900 PF01256 Carbohydrate kinase LDP97_14900 PF03853 YjeF-related protein N-terminus LDP97_14905 PF08331 Domain of unknown function (DUF1730) LDP97_14910 PF00480 ROK family LDP97_14920 PF00005 ABC transporter LDP97_14920 PF09383 NIL domain LDP97_14925 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_14930 PF03180 NLPA lipoprotein LDP97_14935 PF02357 Transcription termination factor nusG LDP97_14940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_14940 PF00672 HAMP domain LDP97_14940 PF12729 Four helix bundle sensory module for signal transduction LDP97_14945 PF00563 EAL domain LDP97_14945 PF00990 Diguanylate cyclase, GGDEF domain LDP97_14945 PF03707 Bacterial signalling protein N terminal repeat LDP97_14950 PF00512 His Kinase A (phospho-acceptor) domain LDP97_14950 PF09456 RcsC Alpha-Beta-Loop (ABL) LDP97_14950 PF00072 Response regulator receiver domain LDP97_14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_14960 PF01966 HD domain LDP97_14960 PF13286 Phosphohydrolase-associated domain LDP97_14965 PF00072 Response regulator receiver domain LDP97_14965 PF00512 His Kinase A (phospho-acceptor) domain LDP97_14965 PF18415 Histidine kinase receptor ArcB trans-membrane domain LDP97_14965 PF01627 Hpt domain LDP97_14965 PF00989 PAS fold LDP97_14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_14985 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LDP97_14990 PF03466 LysR substrate binding domain LDP97_14990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_15000 PF01259 SAICAR synthetase LDP97_15005 PF06804 NlpB/DapX lipoprotein LDP97_15010 PF00701 Dihydrodipicolinate synthetase family LDP97_15015 PF01842 ACT domain LDP97_15020 PF00578 AhpC/TSA family LDP97_15025 PF03887 YfbU domain LDP97_15030 PF04217 Protein of unknown function, DUF412 LDP97_15035 PF00871 Acetokinase family LDP97_15040 PF01515 Phosphate acetyl/butaryl transferase LDP97_15040 PF07085 DRTGG domain LDP97_15045 PF10369 Small subunit of acetolactate synthase LDP97_15050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDP97_15050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDP97_15050 PF00205 Thiamine pyrophosphate enzyme, central domain LDP97_15065 PF01569 PAP2 superfamily LDP97_15075 PF00682 HMGL-like LDP97_15075 PF08502 LeuA allosteric (dimerisation) domain LDP97_15080 PF00180 Isocitrate/isopropylmalate dehydrogenase LDP97_15085 PF00330 Aconitase family (aconitate hydratase) LDP97_15090 PF00694 Aconitase C-terminal domain LDP97_15110 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_15115 PF00005 ABC transporter LDP97_15120 PF02562 PhoH-like protein LDP97_15120 PF13638 PIN domain LDP97_15130 PF02867 Ribonucleotide reductase, barrel domain LDP97_15130 PF00317 Ribonucleotide reductase, all-alpha domain LDP97_15130 PF08343 Ribonucleotide reductase N-terminal LDP97_15160 PF12137 RNA polymerase recycling family C-terminal LDP97_15160 PF00176 SNF2 family N-terminal domain LDP97_15160 PF00271 Helicase conserved C-terminal domain LDP97_15160 PF18337 RapA N-terminal Tudor like domain LDP97_15160 PF18339 RapA N-terminal Tudor like domain 1 LDP97_15165 PF00849 RNA pseudouridylate synthase LDP97_15180 PF00563 EAL domain LDP97_15180 PF03707 Bacterial signalling protein N terminal repeat LDP97_15180 PF00990 Diguanylate cyclase, GGDEF domain LDP97_15180 PF13188 PAS domain LDP97_15190 PF00118 TCP-1/cpn60 chaperonin family LDP97_15195 PF00166 Chaperonin 10 Kd subunit LDP97_15200 PF01554 MatE LDP97_15205 PF04186 FxsA cytoplasmic membrane protein LDP97_15210 PF00206 Lyase LDP97_15210 PF10415 Fumarase C C-terminus LDP97_15215 PF03605 Anaerobic c4-dicarboxylate membrane transporter LDP97_15220 PF00267 Gram-negative porin LDP97_15225 PF07690 Major Facilitator Superfamily LDP97_15230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_15230 PF03466 LysR substrate binding domain LDP97_15235 PF07504 Fungalysin/Thermolysin Propeptide Motif LDP97_15235 PF03413 Peptidase propeptide and YPEB domain LDP97_15235 PF01447 Thermolysin metallopeptidase, catalytic domain LDP97_15235 PF02868 Thermolysin metallopeptidase, alpha-helical domain LDP97_15235 PF04151 Bacterial pre-peptidase C-terminal domain LDP97_15245 PF13302 Acetyltransferase (GNAT) domain LDP97_15255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDP97_15255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDP97_15260 PF07690 Major Facilitator Superfamily LDP97_15265 PF01725 Ham1 family LDP97_15270 PF06969 HemN C-terminal domain LDP97_15270 PF04055 Radical SAM superfamily LDP97_15275 PF03889 Alternative ribosome-rescue factor A LDP97_15280 PF01872 RibD C-terminal domain LDP97_15285 PF13411 MerR HTH family regulatory protein LDP97_15290 PF02142 MGS-like domain LDP97_15290 PF01808 AICARFT/IMPCHase bienzyme LDP97_15295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LDP97_15295 PF02844 Phosphoribosylglycinamide synthetase, N domain LDP97_15295 PF02843 Phosphoribosylglycinamide synthetase, C domain LDP97_15310 PF00128 Alpha amylase, catalytic domain LDP97_15325 PF03979 Sigma-70 factor, region 1.1 LDP97_15325 PF00140 Sigma-70 factor, region 1.2 LDP97_15325 PF04542 Sigma-70 region 2 LDP97_15325 PF04546 Sigma-70, non-essential region LDP97_15325 PF04545 Sigma-70, region 4 LDP97_15325 PF04539 Sigma-70 region 3 LDP97_15330 PF01807 CHC2 zinc finger LDP97_15330 PF08275 DNA primase catalytic core, N-terminal domain LDP97_15330 PF08278 DNA primase DnaG DnaB-binding LDP97_15330 PF10410 DnaB-helicase binding domain of primase LDP97_15335 PF09424 Yqey-like protein LDP97_15340 PF01165 Ribosomal protein S21 LDP97_15345 PF00814 Glycoprotease family LDP97_15350 PF04539 Sigma-70 region 3 LDP97_15350 PF04542 Sigma-70 region 2 LDP97_15350 PF00140 Sigma-70 factor, region 1.2 LDP97_15350 PF04545 Sigma-70, region 4 LDP97_15355 PF01476 LysM domain LDP97_15355 PF01551 Peptidase family M23 LDP97_15360 PF09335 SNARE associated Golgi protein LDP97_15370 PF01975 Survival protein SurE LDP97_15375 PF01142 tRNA pseudouridine synthase D (TruD) LDP97_15380 PF02542 YgbB family LDP97_15385 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LDP97_15390 PF04977 Septum formation initiator LDP97_15395 PF03952 Enolase, N-terminal domain LDP97_15395 PF00113 Enolase, C-terminal TIM barrel domain LDP97_15400 PF06418 CTP synthase N-terminus LDP97_15400 PF00117 Glutamine amidotransferase class-I LDP97_15405 PF03819 MazG nucleotide pyrophosphohydrolase domain LDP97_15410 PF13291 ACT domain LDP97_15410 PF02824 TGS domain LDP97_15410 PF04607 Region found in RelA / SpoT proteins LDP97_15415 PF05958 tRNA (Uracil-5-)-methyltransferase LDP97_15415 PF01938 TRAM domain LDP97_15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_15420 PF00512 His Kinase A (phospho-acceptor) domain LDP97_15420 PF01627 Hpt domain LDP97_15420 PF00072 Response regulator receiver domain LDP97_15420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDP97_15420 PF00672 HAMP domain LDP97_15425 PF07308 Protein of unknown function (DUF1456) LDP97_15430 PF01510 N-acetylmuramoyl-L-alanine amidase LDP97_15435 PF00455 DeoR C terminal sensor domain LDP97_15435 PF08220 DeoR-like helix-turn-helix domain LDP97_15440 PF08013 Tagatose 6 phosphate kinase LDP97_15445 PF01380 SIS domain LDP97_15450 PF03830 PTS system sorbose subfamily IIB component LDP97_15455 PF03609 PTS system sorbose-specific iic component LDP97_15460 PF03613 PTS system mannose/fructose/sorbose family IID component LDP97_15465 PF03610 PTS system fructose IIA component LDP97_15470 PF01979 Amidohydrolase family LDP97_15475 PF01116 Fructose-bisphosphate aldolase class-II LDP97_15485 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LDP97_15490 PF11967 Recombination protein O N terminal LDP97_15490 PF02565 Recombination protein O C terminal LDP97_15495 PF07650 KH domain LDP97_15495 PF01926 50S ribosome-binding GTPase LDP97_15500 PF00035 Double-stranded RNA binding motif LDP97_15500 PF14622 Ribonuclease-III-like LDP97_15505 PF10502 Signal peptidase, peptidase S26 LDP97_15510 PF00679 Elongation factor G C-terminus LDP97_15510 PF00009 Elongation factor Tu GTP binding domain LDP97_15510 PF03144 Elongation factor Tu domain 2 LDP97_15510 PF06421 GTP-binding protein LepA C-terminus LDP97_15520 PF03888 MucB/RseB N-terminal domain LDP97_15520 PF17188 MucB/RseB C-terminal domain LDP97_15525 PF03872 Anti sigma-E protein RseA, N-terminal domain LDP97_15525 PF03873 Anti sigma-E protein RseA, C-terminal domain LDP97_15530 PF08281 Sigma-70, region 4 LDP97_15530 PF04542 Sigma-70 region 2 LDP97_15535 PF00890 FAD binding domain LDP97_15535 PF02910 Fumarate reductase flavoprotein C-term LDP97_15545 PF03937 Flavinator of succinate dehydrogenase LDP97_15550 PF01571 Aminomethyltransferase folate-binding domain LDP97_15555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_15555 PF03466 LysR substrate binding domain LDP97_15570 PF03091 CutA1 divalent ion tolerance protein LDP97_15575 PF11412 Disulphide bond corrector protein DsbC LDP97_15575 PF02683 Cytochrome C biogenesis protein transmembrane region LDP97_15585 PF01266 FAD dependent oxidoreductase LDP97_15590 PF01116 Fructose-bisphosphate aldolase class-II LDP97_15595 PF00162 Phosphoglycerate kinase LDP97_15600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDP97_15600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDP97_15605 PF00480 ROK family LDP97_15610 PF01208 Uroporphyrinogen decarboxylase (URO-D) LDP97_15615 PF00293 NUDIX domain LDP97_15615 PF09297 NADH pyrophosphatase zinc ribbon domain LDP97_15620 PF00171 Aldehyde dehydrogenase family LDP97_15620 PF01619 Proline dehydrogenase LDP97_15620 PF14850 DNA-binding domain of Proline dehydrogenase LDP97_15620 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LDP97_15625 PF08239 Bacterial SH3 domain LDP97_15630 PF00027 Cyclic nucleotide-binding domain LDP97_15630 PF00520 Ion transport protein LDP97_15635 PF02743 Cache domain LDP97_15635 PF00672 HAMP domain LDP97_15635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_15645 PF03710 Glutamate-ammonia ligase adenylyltransferase LDP97_15645 PF08335 GlnD PII-uridylyltransferase LDP97_15665 PF00326 Prolyl oligopeptidase family LDP97_15665 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LDP97_15670 PF00291 Pyridoxal-phosphate dependent enzyme LDP97_15675 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_15680 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_15685 PF00005 ABC transporter LDP97_15690 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_15695 PF02687 FtsX-like permease family LDP97_15695 PF12704 MacB-like periplasmic core domain LDP97_15695 PF00005 ABC transporter LDP97_15700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_15705 PF00486 Transcriptional regulatory protein, C terminal LDP97_15705 PF00072 Response regulator receiver domain LDP97_15710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_15710 PF16527 Two-component sensor protein CpxA, periplasmic domain LDP97_15710 PF00672 HAMP domain LDP97_15710 PF00512 His Kinase A (phospho-acceptor) domain LDP97_15715 PF09297 NADH pyrophosphatase zinc ribbon domain LDP97_15715 PF00293 NUDIX domain LDP97_15715 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LDP97_15745 PF03060 Nitronate monooxygenase LDP97_15755 PF00445 Ribonuclease T2 family LDP97_15770 PF03150 Di-haem cytochrome c peroxidase LDP97_15770 PF00034 Cytochrome c LDP97_15775 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase LDP97_15790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_15790 PF03466 LysR substrate binding domain LDP97_15795 PF00271 Helicase conserved C-terminal domain LDP97_15795 PF00270 DEAD/DEAH box helicase LDP97_15805 PF00753 Metallo-beta-lactamase superfamily LDP97_15815 PF01425 Amidase LDP97_15820 PF04371 Porphyromonas-type peptidyl-arginine deiminase LDP97_15825 PF03466 LysR substrate binding domain LDP97_15825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_15835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDP97_15840 PF00583 Acetyltransferase (GNAT) family LDP97_15860 PF00009 Elongation factor Tu GTP binding domain LDP97_15860 PF03144 Elongation factor Tu domain 2 LDP97_15860 PF16658 Class II release factor RF3, C-terminal domain LDP97_15865 PF00990 Diguanylate cyclase, GGDEF domain LDP97_15865 PF00072 Response regulator receiver domain LDP97_15870 PF00990 Diguanylate cyclase, GGDEF domain LDP97_15875 PF05762 VWA domain containing CoxE-like protein LDP97_15880 PF12592 Protein of unknown function (DUF3763) LDP97_15880 PF07728 AAA domain (dynein-related subfamily) LDP97_15880 PF17868 AAA lid domain LDP97_15890 PF00583 Acetyltransferase (GNAT) family LDP97_15900 PF00501 AMP-binding enzyme LDP97_15910 PF04262 Glutamate-cysteine ligase LDP97_15915 PF05193 Peptidase M16 inactive domain LDP97_15915 PF00675 Insulinase (Peptidase family M16) LDP97_15920 PF09335 SNARE associated Golgi protein LDP97_15925 PF14765 Polyketide synthase dehydratase LDP97_15925 PF02801 Beta-ketoacyl synthase, C-terminal domain LDP97_15925 PF08990 Erythronolide synthase docking LDP97_15925 PF00698 Acyl transferase domain LDP97_15925 PF08659 KR domain LDP97_15925 PF00109 Beta-ketoacyl synthase, N-terminal domain LDP97_15925 PF16197 Ketoacyl-synthetase C-terminal extension LDP97_15925 PF08240 Alcohol dehydrogenase GroES-like domain LDP97_15925 PF00550 Phosphopantetheine attachment site LDP97_15945 PF00970 Oxidoreductase FAD-binding domain LDP97_15945 PF00175 Oxidoreductase NAD-binding domain LDP97_15950 PF01281 Ribosomal protein L9, N-terminal domain LDP97_15950 PF03948 Ribosomal protein L9, C-terminal domain LDP97_15955 PF01084 Ribosomal protein S18 LDP97_15960 PF01250 Ribosomal protein S6 LDP97_15965 PF01566 Natural resistance-associated macrophage protein LDP97_15985 PF13673 Acetyltransferase (GNAT) domain LDP97_15995 PF00588 SpoU rRNA Methylase family LDP97_15995 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDP97_16000 PF00575 S1 RNA binding domain LDP97_16000 PF00773 RNB domain LDP97_16000 PF17876 Cold shock domain LDP97_16000 PF08461 Ribonuclease R winged-helix domain LDP97_16000 PF08206 Ribonuclease B OB domain LDP97_16005 PF00990 Diguanylate cyclase, GGDEF domain LDP97_16010 PF02664 S-Ribosylhomocysteinase (LuxS) LDP97_16020 PF00543 Nitrogen regulatory protein P-II LDP97_16025 PF00795 Carbon-nitrogen hydrolase LDP97_16025 PF02540 NAD synthase LDP97_16060 PF05567 Neisseria PilC beta-propeller domain LDP97_16085 PF02401 LytB protein LDP97_16090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDP97_16095 PF01252 Signal peptidase (SPase) II LDP97_16100 PF00133 tRNA synthetases class I (I, L, M and V) LDP97_16100 PF06827 Zinc finger found in FPG and IleRS LDP97_16100 PF08264 Anticodon-binding domain of tRNA LDP97_16105 PF06574 FAD synthetase LDP97_16105 PF01687 Riboflavin kinase LDP97_16115 PF03023 Lipid II flippase MurJ LDP97_16120 PF01649 Ribosomal protein S20 LDP97_16125 PF01022 Bacterial regulatory protein, arsR family LDP97_16130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_16130 PF03466 LysR substrate binding domain LDP97_16140 PF06965 Na+/H+ antiporter 1 LDP97_16145 PF00303 Thymidylate synthase LDP97_16150 PF01790 Prolipoprotein diacylglyceryl transferase LDP97_16155 PF01590 GAF domain LDP97_16155 PF05524 PEP-utilising enzyme, N-terminal LDP97_16155 PF02896 PEP-utilising enzyme, TIM barrel domain LDP97_16155 PF00391 PEP-utilising enzyme, mobile domain LDP97_16160 PF00293 NUDIX domain LDP97_16165 PF02976 DNA mismatch repair enzyme MutH LDP97_16175 PF01245 Ribosomal protein L19 LDP97_16180 PF01746 tRNA (Guanine-1)-methyltransferase LDP97_16185 PF05239 PRC-barrel domain LDP97_16185 PF01782 RimM N-terminal domain LDP97_16190 PF00886 Ribosomal protein S16 LDP97_16195 PF02978 Signal peptide binding domain LDP97_16195 PF00448 SRP54-type protein, GTPase domain LDP97_16195 PF02881 SRP54-type protein, helical bundle domain LDP97_16200 PF01578 Cytochrome C assembly protein LDP97_16205 PF00571 CBS domain LDP97_16205 PF03471 Transporter associated domain LDP97_16205 PF01595 Cyclin M transmembrane N-terminal domain LDP97_16210 PF02082 Transcriptional regulator LDP97_16215 PF00970 Oxidoreductase FAD-binding domain LDP97_16215 PF00042 Globin LDP97_16215 PF00175 Oxidoreductase NAD-binding domain LDP97_16220 PF08238 Sel1 repeat LDP97_16225 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LDP97_16225 PF00056 lactate/malate dehydrogenase, NAD binding domain LDP97_16230 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_16235 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_16240 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_16245 PF00005 ABC transporter LDP97_16250 PF01316 Arginine repressor, DNA binding domain LDP97_16250 PF02863 Arginine repressor, C-terminal domain LDP97_16255 PF04261 Dyp-type peroxidase family LDP97_16260 PF00005 ABC transporter LDP97_16260 PF08402 TOBE domain LDP97_16270 PF13416 Bacterial extracellular solute-binding protein LDP97_16275 PF00543 Nitrogen regulatory protein P-II LDP97_16280 PF00472 RF-1 domain LDP97_16285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDP97_16285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDP97_16290 PF07662 Na+ dependent nucleoside transporter C-terminus LDP97_16290 PF01773 Na+ dependent nucleoside transporter N-terminus LDP97_16290 PF07670 Nucleoside recognition LDP97_16295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_16295 PF03466 LysR substrate binding domain LDP97_16300 PF00255 Glutathione peroxidase LDP97_16310 PF02595 Glycerate kinase family LDP97_16315 PF02447 GntP family permease LDP97_16320 PF05651 Putative sugar diacid recognition LDP97_16320 PF17853 GGDEF-like domain LDP97_16320 PF13556 PucR C-terminal helix-turn-helix domain LDP97_16330 PF06062 Uncharacterised protein family (UPF0231) LDP97_16345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_16345 PF08447 PAS fold LDP97_16350 PF03372 Endonuclease/Exonuclease/phosphatase family LDP97_16365 PF00270 DEAD/DEAH box helicase LDP97_16365 PF00271 Helicase conserved C-terminal domain LDP97_16375 PF08534 Redoxin LDP97_16380 PF00403 Heavy-metal-associated domain LDP97_16385 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDP97_16385 PF17967 Pullulanase N2 domain LDP97_16385 PF18494 Pullulanase Ins domain LDP97_16385 PF03714 Bacterial pullanase-associated domain LDP97_16385 PF11852 Domain of unknown function (DUF3372) LDP97_16400 PF02583 Metal-sensitive transcriptional repressor LDP97_16405 PF00155 Aminotransferase class I and II LDP97_16410 PF03466 LysR substrate binding domain LDP97_16410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_16420 PF04055 Radical SAM superfamily LDP97_16425 PF11230 Protein of unknown function (DUF3029) LDP97_16445 PF14684 Tricorn protease C1 domain LDP97_16445 PF14685 Tricorn protease PDZ domain LDP97_16445 PF07676 WD40-like Beta Propeller Repeat LDP97_16445 PF03572 Peptidase family S41 LDP97_16475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_16475 PF00672 HAMP domain LDP97_16475 PF12729 Four helix bundle sensory module for signal transduction LDP97_16480 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LDP97_16480 PF18416 N-acetylglucosamine binding protein domain 2 LDP97_16485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_16485 PF03466 LysR substrate binding domain LDP97_16490 PF00005 ABC transporter LDP97_16490 PF12857 TOBE-like domain LDP97_16495 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_16500 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_16515 PF13194 Domain of unknown function (DUF4010) LDP97_16520 PF14602 Hexapeptide repeat of succinyl-transferase LDP97_16520 PF12464 Maltose acetyltransferase LDP97_16545 PF14698 Argininosuccinate lyase C-terminal LDP97_16545 PF00206 Lyase LDP97_16550 PF00764 Arginosuccinate synthase LDP97_16555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDP97_16555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDP97_16560 PF00696 Amino acid kinase family LDP97_16565 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDP97_16565 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDP97_16570 PF07687 Peptidase dimerisation domain LDP97_16570 PF01546 Peptidase family M20/M25/M40 LDP97_16575 PF00311 Phosphoenolpyruvate carboxylase LDP97_16585 PF00696 Amino acid kinase family LDP97_16585 PF00742 Homoserine dehydrogenase LDP97_16585 PF03447 Homoserine dehydrogenase, NAD binding domain LDP97_16590 PF01053 Cys/Met metabolism PLP-dependent enzyme LDP97_16595 PF01340 Met Apo-repressor, MetJ LDP97_16600 PF06445 GyrI-like small molecule binding domain LDP97_16600 PF12833 Helix-turn-helix domain LDP97_16605 PF01588 Putative tRNA binding domain LDP97_16610 PF03222 Tryptophan/tyrosine permease family LDP97_16615 PF00459 Inositol monophosphatase family LDP97_16620 PF00293 NUDIX domain LDP97_16625 PF13419 Haloacid dehalogenase-like hydrolase LDP97_16630 PF01479 S4 domain LDP97_16630 PF00579 tRNA synthetases class I (W and Y) LDP97_16635 PF00196 Bacterial regulatory proteins, luxR family LDP97_16640 PF01203 Type II secretion system (T2SS), protein N LDP97_16645 PF04612 Type II secretion system (T2SS), protein M LDP97_16650 PF12693 GspL periplasmic domain LDP97_16650 PF05134 Type II secretion system (T2SS), protein L LDP97_16655 PF03934 Type II secretion system (T2SS), protein K LDP97_16660 PF07963 Prokaryotic N-terminal methylation motif LDP97_16660 PF11612 Type II secretion system (T2SS), protein J LDP97_16665 PF07963 Prokaryotic N-terminal methylation motif LDP97_16665 PF02501 Type II secretion system (T2SS), protein I LDP97_16675 PF07963 Prokaryotic N-terminal methylation motif LDP97_16675 PF08334 Type II secretion system (T2SS), protein G LDP97_16680 PF00482 Type II secretion system (T2SS), protein F LDP97_16685 PF00437 Type II/IV secretion system protein LDP97_16690 PF00263 Bacterial type II and III secretion system protein LDP97_16690 PF03958 Bacterial type II/III secretion system short domain LDP97_16695 PF11356 Type II secretion system protein C LDP97_16700 PF01479 S4 domain LDP97_16705 PF01430 Hsp33 protein LDP97_16710 PF01293 Phosphoenolpyruvate carboxykinase LDP97_16715 PF00392 Bacterial regulatory proteins, gntR family LDP97_16720 PF01321 Creatinase/Prolidase N-terminal domain LDP97_16720 PF00557 Metallopeptidase family M24 LDP97_16725 PF11756 Nitrous oxide-stimulated promoter LDP97_16730 PF00583 Acetyltransferase (GNAT) family LDP97_16735 PF05433 Glycine zipper 2TM domain LDP97_16740 PF02872 5'-nucleotidase, C-terminal domain LDP97_16740 PF00149 Calcineurin-like phosphoesterase LDP97_16745 PF01810 LysE type translocator LDP97_16750 PF03472 Autoinducer binding domain LDP97_16750 PF00196 Bacterial regulatory proteins, luxR family LDP97_16755 PF00765 Autoinducer synthase LDP97_16760 PF03466 LysR substrate binding domain LDP97_16760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_16765 PF17876 Cold shock domain LDP97_16765 PF08206 Ribonuclease B OB domain LDP97_16765 PF00773 RNB domain LDP97_16770 PF00440 Bacterial regulatory proteins, tetR family LDP97_16780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDP97_16780 PF02378 Phosphotransferase system, EIIC LDP97_16780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDP97_16785 PF08125 Mannitol dehydrogenase C-terminal domain LDP97_16785 PF01232 Mannitol dehydrogenase Rossmann domain LDP97_16790 PF05068 Mannitol repressor LDP97_16795 PF03471 Transporter associated domain LDP97_16795 PF00999 Sodium/hydrogen exchanger family LDP97_16795 PF02080 TrkA-C domain LDP97_16815 PF01544 CorA-like Mg2+ transporter protein LDP97_16820 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LDP97_16835 PF04307 LexA-binding, inner membrane-associated putative hydrolase LDP97_16840 PF07670 Nucleoside recognition LDP97_16840 PF07662 Na+ dependent nucleoside transporter C-terminus LDP97_16840 PF01773 Na+ dependent nucleoside transporter N-terminus LDP97_16845 PF03880 DbpA RNA binding domain LDP97_16845 PF00270 DEAD/DEAH box helicase LDP97_16845 PF00271 Helicase conserved C-terminal domain LDP97_16870 PF01040 UbiA prenyltransferase family LDP97_16875 PF00425 chorismate binding enzyme LDP97_16880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDP97_16880 PF16582 Middle domain of thiamine pyrophosphate LDP97_16880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDP97_16885 PF12697 Alpha/beta hydrolase family LDP97_16890 PF00378 Enoyl-CoA hydratase/isomerase LDP97_16895 PF13378 Enolase C-terminal domain-like LDP97_16900 PF00501 AMP-binding enzyme LDP97_16910 PF00419 Fimbrial protein LDP97_16915 PF00419 Fimbrial protein LDP97_16920 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDP97_16920 PF02753 Pili assembly chaperone PapD, C-terminal domain LDP97_16925 PF00577 Outer membrane usher protein LDP97_16925 PF13954 PapC N-terminal domain LDP97_16925 PF13953 PapC C-terminal domain LDP97_16935 PF00419 Fimbrial protein LDP97_16945 PF08453 Peptidase family M9 N-terminal LDP97_16945 PF01752 Collagenase LDP97_16950 PF02698 DUF218 domain LDP97_16955 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LDP97_16955 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LDP97_16965 PF00561 alpha/beta hydrolase fold LDP97_16970 PF03280 Proteobacterial lipase chaperone protein LDP97_16985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_16985 PF12793 Sugar transport-related sRNA regulator N-term LDP97_16995 PF01053 Cys/Met metabolism PLP-dependent enzyme LDP97_17005 PF00465 Iron-containing alcohol dehydrogenase LDP97_17020 PF03577 Peptidase family C69 LDP97_17025 PF00106 short chain dehydrogenase LDP97_17045 PF02308 MgtC family LDP97_17050 PF00128 Alpha amylase, catalytic domain LDP97_17050 PF02903 Alpha amylase, N-terminal ig-like domain LDP97_17050 PF16657 Maltogenic Amylase, C-terminal domain LDP97_17065 PF00884 Sulfatase LDP97_17070 PF01037 Lrp/AsnC ligand binding domain LDP97_17080 PF04204 Homoserine O-succinyltransferase LDP97_17085 PF12072 Domain of unknown function (DUF3552) LDP97_17085 PF00013 KH domain LDP97_17085 PF01966 HD domain LDP97_17090 PF00994 Probable molybdopterin binding domain LDP97_17090 PF02464 Competence-damaged protein LDP97_17100 PF00005 ABC transporter LDP97_17120 PF07722 Peptidase C26 LDP97_17130 PF00027 Cyclic nucleotide-binding domain LDP97_17130 PF13545 Crp-like helix-turn-helix domain LDP97_17140 PF13419 Haloacid dehalogenase-like hydrolase LDP97_17145 PF00589 Phage integrase family LDP97_17145 PF02899 Phage integrase, N-terminal SAM-like domain LDP97_17155 PF01678 Diaminopimelate epimerase LDP97_17160 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDP97_17160 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LDP97_17170 PF01491 Frataxin-like domain LDP97_17175 PF02230 Phospholipase/Carboxylesterase LDP97_17180 PF12633 Adenylate cyclase NT domain LDP97_17180 PF01295 Adenylate cyclase, class-I LDP97_17185 PF03900 Porphobilinogen deaminase, C-terminal domain LDP97_17185 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LDP97_17190 PF02602 Uroporphyrinogen-III synthase HemD LDP97_17195 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LDP97_17205 PF03692 Putative zinc- or iron-chelating domain LDP97_17210 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LDP97_17225 PF07715 TonB-dependent Receptor Plug Domain LDP97_17225 PF00593 TonB dependent receptor LDP97_17250 PF01638 HxlR-like helix-turn-helix LDP97_17255 PF08803 Putative mono-oxygenase ydhR LDP97_17270 PF06055 Exopolysaccharide synthesis, ExoD LDP97_17280 PF00990 Diguanylate cyclase, GGDEF domain LDP97_17280 PF17151 Periplasmic sensor domain LDP97_17295 PF13036 Peptidoglycan-synthase activator LpoB LDP97_17305 PF04055 Radical SAM superfamily LDP97_17305 PF06968 Biotin and Thiamin Synthesis associated domain LDP97_17310 PF05690 Thiazole biosynthesis protein ThiG LDP97_17320 PF00899 ThiF family LDP97_17325 PF02581 Thiamine monophosphate synthase LDP97_17330 PF01964 Radical SAM ThiC family LDP97_17330 PF13667 ThiC-associated domain LDP97_17335 PF03440 Aerolysin/Pertussis toxin (APT) domain LDP97_17335 PF01117 Aerolysin toxin LDP97_17350 PF00486 Transcriptional regulatory protein, C terminal LDP97_17350 PF00072 Response regulator receiver domain LDP97_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_17360 PF05525 Branched-chain amino acid transport protein LDP97_17365 PF08443 RimK-like ATP-grasp domain LDP97_17365 PF18030 RimK PreATP-grasp domain LDP97_17370 PF02310 B12 binding domain LDP97_17370 PF02607 B12 binding domain LDP97_17370 PF02965 Vitamin B12 dependent methionine synthase, activation domain LDP97_17370 PF00809 Pterin binding enzyme LDP97_17370 PF02574 Homocysteine S-methyltransferase LDP97_17375 PF00999 Sodium/hydrogen exchanger family LDP97_17415 PF04320 Protein with unknown function (DUF469) LDP97_17420 PF00419 Fimbrial protein LDP97_17435 PF13953 PapC C-terminal domain LDP97_17435 PF13954 PapC N-terminal domain LDP97_17435 PF00577 Outer membrane usher protein LDP97_17440 PF02753 Pili assembly chaperone PapD, C-terminal domain LDP97_17440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDP97_17455 PF00419 Fimbrial protein LDP97_17475 PF08668 HDOD domain LDP97_17485 PF04228 Putative neutral zinc metallopeptidase LDP97_17490 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LDP97_17505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_17505 PF08447 PAS fold LDP97_17505 PF13426 PAS domain LDP97_17510 PF08678 Rsbr N terminal LDP97_17510 PF01740 STAS domain LDP97_17515 PF13581 Histidine kinase-like ATPase domain LDP97_17520 PF00672 HAMP domain LDP97_17520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_17520 PF00512 His Kinase A (phospho-acceptor) domain LDP97_17520 PF00072 Response regulator receiver domain LDP97_17520 PF01627 Hpt domain LDP97_17520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDP97_17525 PF00072 Response regulator receiver domain LDP97_17535 PF07690 Major Facilitator Superfamily LDP97_17540 PF01914 MarC family integral membrane protein LDP97_17550 PF13580 SIS domain LDP97_17555 PF02378 Phosphotransferase system, EIIC LDP97_17555 PF00367 phosphotransferase system, EIIB LDP97_17570 PF01380 SIS domain LDP97_17570 PF01418 Helix-turn-helix domain, rpiR family LDP97_17575 PF01523 Putative modulator of DNA gyrase LDP97_17580 PF00795 Carbon-nitrogen hydrolase LDP97_17590 PF13116 Protein of unknown function LDP97_17590 PF13502 AsmA-like C-terminal region LDP97_17595 PF10150 Ribonuclease E/G family LDP97_17595 PF00575 S1 RNA binding domain LDP97_17600 PF02545 Maf-like protein LDP97_17605 PF04093 rod shape-determining protein MreD LDP97_17610 PF04085 rod shape-determining protein MreC LDP97_17640 PF14245 Type IV pilin PilA LDP97_17640 PF07963 Prokaryotic N-terminal methylation motif LDP97_17645 PF07963 Prokaryotic N-terminal methylation motif LDP97_17645 PF00114 Pilin (bacterial filament) LDP97_17650 PF07963 Prokaryotic N-terminal methylation motif LDP97_17660 PF00482 Type II secretion system (T2SS), protein F LDP97_17665 PF00437 Type II/IV secretion system protein LDP97_17665 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LDP97_17675 PF13401 AAA domain LDP97_17675 PF09077 Mu B transposition protein, C terminal LDP97_17680 PF03958 Bacterial type II/III secretion system short domain LDP97_17680 PF00263 Bacterial type II and III secretion system protein LDP97_17710 PF00990 Diguanylate cyclase, GGDEF domain LDP97_17710 PF17157 Gammaproteobacterial periplasmic sensor domain LDP97_17710 PF00563 EAL domain LDP97_17715 PF00563 EAL domain LDP97_17715 PF12792 CSS motif domain associated with EAL LDP97_17720 PF01699 Sodium/calcium exchanger protein LDP97_17725 PF00221 Aromatic amino acid lyase LDP97_17730 PF17391 Urocanase N-terminal domain LDP97_17730 PF01175 Urocanase Rossmann-like domain LDP97_17730 PF17392 Urocanase C-terminal domain LDP97_17735 PF00491 Arginase family LDP97_17740 PF01979 Amidohydrolase family LDP97_17745 PF07702 UTRA domain LDP97_17745 PF00392 Bacterial regulatory proteins, gntR family LDP97_17750 PF00484 Carbonic anhydrase LDP97_17755 PF04542 Sigma-70 region 2 LDP97_17755 PF04545 Sigma-70, region 4 LDP97_17755 PF00140 Sigma-70 factor, region 1.2 LDP97_17760 PF18075 FtsX extracellular domain LDP97_17765 PF00005 ABC transporter LDP97_17770 PF00448 SRP54-type protein, GTPase domain LDP97_17770 PF02881 SRP54-type protein, helical bundle domain LDP97_17790 PF00440 Bacterial regulatory proteins, tetR family LDP97_17800 PF13091 PLD-like domain LDP97_17810 PF01464 Transglycosylase SLT domain LDP97_17820 PF02416 mttA/Hcf106 family LDP97_17825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_17825 PF03466 LysR substrate binding domain LDP97_17830 PF01914 MarC family integral membrane protein LDP97_17835 PF10678 Protein of unknown function (DUF2492) LDP97_17840 PF00375 Sodium:dicarboxylate symporter family LDP97_17850 PF03466 LysR substrate binding domain LDP97_17850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_17855 PF13533 Biotin-lipoyl like LDP97_17860 PF07690 Major Facilitator Superfamily LDP97_17865 PF07947 YhhN family LDP97_17885 PF00326 Prolyl oligopeptidase family LDP97_17885 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LDP97_17900 PF00106 short chain dehydrogenase LDP97_17905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_17905 PF03466 LysR substrate binding domain LDP97_17910 PF02525 Flavodoxin-like fold LDP97_17915 PF02254 TrkA-N domain LDP97_17915 PF00999 Sodium/hydrogen exchanger family LDP97_17955 PF01196 Ribosomal protein L17 LDP97_17960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LDP97_17960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LDP97_17960 PF01000 RNA polymerase Rpb3/RpoA insert domain LDP97_17965 PF00163 Ribosomal protein S4/S9 N-terminal domain LDP97_17965 PF01479 S4 domain LDP97_17970 PF00411 Ribosomal protein S11 LDP97_17975 PF00416 Ribosomal protein S13/S18 LDP97_17980 PF00444 Ribosomal protein L36 LDP97_17985 PF00344 SecY translocase LDP97_17990 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LDP97_17995 PF00327 Ribosomal protein L30p/L7e LDP97_18000 PF03719 Ribosomal protein S5, C-terminal domain LDP97_18000 PF00333 Ribosomal protein S5, N-terminal domain LDP97_18005 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LDP97_18010 PF00347 Ribosomal protein L6 LDP97_18015 PF00410 Ribosomal protein S8 LDP97_18020 PF00253 Ribosomal protein S14p/S29e LDP97_18025 PF00673 ribosomal L5P family C-terminus LDP97_18025 PF00281 Ribosomal protein L5 LDP97_18030 PF00467 KOW motif LDP97_18030 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LDP97_18035 PF00238 Ribosomal protein L14p/L23e LDP97_18040 PF00366 Ribosomal protein S17 LDP97_18045 PF00831 Ribosomal L29 protein LDP97_18050 PF00252 Ribosomal protein L16p/L10e LDP97_18055 PF07650 KH domain LDP97_18055 PF00189 Ribosomal protein S3, C-terminal domain LDP97_18060 PF00237 Ribosomal protein L22p/L17e LDP97_18065 PF00203 Ribosomal protein S19 LDP97_18070 PF00181 Ribosomal Proteins L2, RNA binding domain LDP97_18070 PF03947 Ribosomal Proteins L2, C-terminal domain LDP97_18075 PF00276 Ribosomal protein L23 LDP97_18080 PF00573 Ribosomal protein L4/L1 family LDP97_18085 PF00297 Ribosomal protein L3 LDP97_18090 PF00338 Ribosomal protein S10p/S20e LDP97_18100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_18100 PF00672 HAMP domain LDP97_18100 PF00512 His Kinase A (phospho-acceptor) domain LDP97_18105 PF00486 Transcriptional regulatory protein, C terminal LDP97_18105 PF00072 Response regulator receiver domain LDP97_18110 PF01272 Transcription elongation factor, GreA/GreB, C-term LDP97_18110 PF03449 Transcription elongation factor, N-terminal LDP97_18115 PF17674 HHH domain LDP97_18115 PF00575 S1 RNA binding domain LDP97_18115 PF09371 Tex-like protein N-terminal domain LDP97_18115 PF16921 Tex protein YqgF-like domain LDP97_18135 PF00561 alpha/beta hydrolase fold LDP97_18140 PF00156 Phosphoribosyl transferase domain LDP97_18145 PF01521 Iron-sulphur cluster biosynthesis LDP97_18145 PF01106 NifU-like domain LDP97_18150 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LDP97_18150 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LDP97_18155 PF02556 Preprotein translocase subunit SecB LDP97_18160 PF00581 Rhodanese-like domain LDP97_18165 PF01676 Metalloenzyme superfamily LDP97_18165 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LDP97_18170 PF01551 Peptidase family M23 LDP97_18180 PF00356 Bacterial regulatory proteins, lacI family LDP97_18180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDP97_18185 PF01081 KDPG and KHG aldolase LDP97_18190 PF00920 Dehydratase family LDP97_18195 PF01202 Shikimate kinase LDP97_18200 PF02447 GntP family permease LDP97_18205 PF13091 PLD-like domain LDP97_18210 PF00270 DEAD/DEAH box helicase LDP97_18210 PF00271 Helicase conserved C-terminal domain LDP97_18210 PF17191 RecG wedge domain LDP97_18220 PF00583 Acetyltransferase (GNAT) family LDP97_18220 PF09500 Putative thioesterase (yiiD_Cterm) LDP97_18230 PF02580 D-Tyr-tRNA(Tyr) deacylase LDP97_18235 PF03631 Virulence factor BrkB LDP97_18240 PF00679 Elongation factor G C-terminus LDP97_18240 PF03144 Elongation factor Tu domain 2 LDP97_18240 PF00009 Elongation factor Tu GTP binding domain LDP97_18245 PF00120 Glutamine synthetase, catalytic domain LDP97_18245 PF03951 Glutamine synthetase, beta-Grasp domain LDP97_18255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_18255 PF00989 PAS fold LDP97_18255 PF00512 His Kinase A (phospho-acceptor) domain LDP97_18260 PF02954 Bacterial regulatory protein, Fis family LDP97_18260 PF00072 Response regulator receiver domain LDP97_18260 PF00158 Sigma-54 interaction domain LDP97_18265 PF00962 Adenosine/AMP deaminase LDP97_18270 PF06969 HemN C-terminal domain LDP97_18270 PF04055 Radical SAM superfamily LDP97_18275 PF10675 Protein of unknown function (DUF2489) LDP97_18280 PF04220 Der GTPase activator (YihI) LDP97_18285 PF00034 Cytochrome c LDP97_18290 PF01926 50S ribosome-binding GTPase LDP97_18295 PF07369 Protein of unknown function (DUF1488) LDP97_18300 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LDP97_18300 PF01488 Shikimate / quinate 5-dehydrogenase LDP97_18300 PF08501 Shikimate dehydrogenase substrate binding domain LDP97_18305 PF01218 Coproporphyrinogen III oxidase LDP97_18310 PF01300 Telomere recombination LDP97_18315 PF00731 AIR carboxylase LDP97_18320 PF01396 Topoisomerase DNA binding C4 zinc finger LDP97_18325 PF04361 Protein of unknown function (DUF494) LDP97_18330 PF02481 DNA recombination-mediator protein A LDP97_18330 PF17782 DprA winged helix domain LDP97_18340 PF01327 Polypeptide deformylase LDP97_18345 PF02911 Formyl transferase, C-terminal domain LDP97_18345 PF00551 Formyl transferase LDP97_18350 PF01189 16S rRNA methyltransferase RsmB/F LDP97_18350 PF01029 NusB family LDP97_18355 PF02080 TrkA-C domain LDP97_18355 PF02254 TrkA-N domain LDP97_18360 PF02386 Cation transport protein LDP97_18365 PF02646 RmuC family LDP97_18380 PF02082 Transcriptional regulator LDP97_18385 PF00294 pfkB family carbohydrate kinase LDP97_18390 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDP97_18390 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDP97_18395 PF00117 Glutamine amidotransferase class-I LDP97_18395 PF00958 GMP synthase C terminal domain LDP97_18395 PF02540 NAD synthase LDP97_18400 PF00171 Aldehyde dehydrogenase family LDP97_18405 PF00202 Aminotransferase class-III LDP97_18410 PF01381 Helix-turn-helix LDP97_18410 PF07883 Cupin domain LDP97_18415 PF00171 Aldehyde dehydrogenase family LDP97_18425 PF00892 EamA-like transporter family LDP97_18430 PF12833 Helix-turn-helix domain LDP97_18435 PF01810 LysE type translocator LDP97_18440 PF00690 Cation transporter/ATPase, N-terminus LDP97_18440 PF00689 Cation transporting ATPase, C-terminus LDP97_18445 PF04143 Sulphur transport LDP97_18450 PF01810 LysE type translocator LDP97_18460 PF06206 CpeT/CpcT family (DUF1001) LDP97_18485 PF14001 YdfZ protein LDP97_18495 PF03466 LysR substrate binding domain LDP97_18495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_18515 PF00580 UvrD/REP helicase N-terminal domain LDP97_18515 PF13361 UvrD-like helicase C-terminal domain LDP97_18520 PF02608 ABC transporter substrate-binding protein PnrA-like LDP97_18525 PF00005 ABC transporter LDP97_18530 PF02653 Branched-chain amino acid transport system / permease component LDP97_18535 PF02653 Branched-chain amino acid transport system / permease component LDP97_18540 PF03466 LysR substrate binding domain LDP97_18540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_18545 PF08240 Alcohol dehydrogenase GroES-like domain LDP97_18545 PF00107 Zinc-binding dehydrogenase LDP97_18550 PF00756 Putative esterase LDP97_18560 PF12867 DinB superfamily LDP97_18560 PF03781 Sulfatase-modifying factor enzyme 1 LDP97_18565 PF13593 SBF-like CPA transporter family (DUF4137) LDP97_18570 PF13520 Amino acid permease LDP97_18575 PF01588 Putative tRNA binding domain LDP97_18580 PF13520 Amino acid permease LDP97_18585 PF04074 YhcH/YjgK/YiaL LDP97_18590 PF02837 Glycosyl hydrolases family 2, sugar binding domain LDP97_18590 PF02929 Beta galactosidase small chain LDP97_18590 PF16353 Domain of unknown function(DUF4981) LDP97_18590 PF00703 Glycosyl hydrolases family 2 LDP97_18590 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LDP97_18595 PF00356 Bacterial regulatory proteins, lacI family LDP97_18635 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_18640 PF01612 3'-5' exonuclease LDP97_18640 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDP97_18640 PF00476 DNA polymerase family A LDP97_18640 PF01367 5'-3' exonuclease, C-terminal SAM fold LDP97_18650 PF06005 Cell division protein ZapB LDP97_18660 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_18660 PF06426 Serine acetyltransferase, N-terminal LDP97_18665 PF01545 Cation efflux family LDP97_18665 PF16916 Dimerisation domain of Zinc Transporter LDP97_18670 PF00486 Transcriptional regulatory protein, C terminal LDP97_18670 PF00072 Response regulator receiver domain LDP97_18675 PF00672 HAMP domain LDP97_18675 PF00512 His Kinase A (phospho-acceptor) domain LDP97_18675 PF16527 Two-component sensor protein CpxA, periplasmic domain LDP97_18675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_18680 PF00588 SpoU rRNA Methylase family LDP97_18685 PF01554 MatE LDP97_18690 PF02630 SCO1/SenC LDP97_18700 PF00717 Peptidase S24-like LDP97_18700 PF01726 LexA DNA binding domain LDP97_18705 PF01553 Acyltransferase LDP97_18710 PF01040 UbiA prenyltransferase family LDP97_18715 PF04345 Chorismate lyase LDP97_18720 PF03748 Flagellar basal body-associated protein FliL LDP97_18735 PF08240 Alcohol dehydrogenase GroES-like domain LDP97_18735 PF00107 Zinc-binding dehydrogenase LDP97_18740 PF00356 Bacterial regulatory proteins, lacI family LDP97_18740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDP97_18745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDP97_18755 PF03611 PTS system sugar-specific permease component LDP97_18760 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LDP97_18765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDP97_18770 PF00535 Glycosyl transferase family 2 LDP97_18775 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDP97_18780 PF01467 Cytidylyltransferase-like LDP97_18785 PF04393 Protein of unknown function (DUF535) LDP97_18790 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LDP97_18790 PF06827 Zinc finger found in FPG and IleRS LDP97_18790 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LDP97_18800 PF00471 Ribosomal protein L33 LDP97_18805 PF00830 Ribosomal L28 family LDP97_18810 PF04002 RadC-like JAB domain LDP97_18815 PF04127 DNA / pantothenate metabolism flavoprotein LDP97_18815 PF02441 Flavoprotein LDP97_18820 PF00692 dUTPase LDP97_18825 PF00440 Bacterial regulatory proteins, tetR family LDP97_18830 PF05552 Conserved TM helix LDP97_18830 PF00924 Mechanosensitive ion channel LDP97_18840 PF00342 Phosphoglucose isomerase LDP97_18850 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LDP97_18850 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LDP97_18855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_18855 PF03466 LysR substrate binding domain LDP97_18870 PF00583 Acetyltransferase (GNAT) family LDP97_18870 PF13380 CoA binding domain LDP97_18870 PF13607 Succinyl-CoA ligase like flavodoxin domain LDP97_18895 PF12724 Flavodoxin domain LDP97_18900 PF02386 Cation transport protein LDP97_18905 PF01205 Uncharacterized protein family UPF0029 LDP97_18905 PF09186 Domain of unknown function (DUF1949) LDP97_18910 PF00557 Metallopeptidase family M24 LDP97_18915 PF00501 AMP-binding enzyme LDP97_18915 PF13193 AMP-binding enzyme C-terminal domain LDP97_18920 PF00378 Enoyl-CoA hydratase/isomerase LDP97_18920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDP97_18920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDP97_18925 PF02803 Thiolase, C-terminal domain LDP97_18925 PF00108 Thiolase, N-terminal domain LDP97_18930 PF00072 Response regulator receiver domain LDP97_18930 PF00486 Transcriptional regulatory protein, C terminal LDP97_18935 PF00672 HAMP domain LDP97_18935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_18935 PF00512 His Kinase A (phospho-acceptor) domain LDP97_18940 PF01547 Bacterial extracellular solute-binding protein LDP97_18950 PF01206 Sulfurtransferase TusA LDP97_18955 PF01042 Endoribonuclease L-PSP LDP97_18965 PF00691 OmpA family LDP97_18965 PF13488 Glycine zipper LDP97_18970 PF00857 Isochorismatase family LDP97_18975 PF03352 Methyladenine glycosylase LDP97_18980 PF02091 Glycyl-tRNA synthetase alpha subunit LDP97_18985 PF02092 Glycyl-tRNA synthetase beta subunit LDP97_18985 PF05746 DALR anticodon binding domain LDP97_19000 PF01747 ATP-sulfurylase LDP97_19000 PF14306 PUA-like domain LDP97_19020 PF03222 Tryptophan/tyrosine permease family LDP97_19025 PF12801 4Fe-4S binding domain LDP97_19035 PF18113 Rubredoxin binding C-terminal domain LDP97_19035 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_19040 PF00753 Metallo-beta-lactamase superfamily LDP97_19040 PF00301 Rubredoxin LDP97_19040 PF00258 Flavodoxin LDP97_19045 PF01590 GAF domain LDP97_19045 PF00158 Sigma-54 interaction domain LDP97_19050 PF00392 Bacterial regulatory proteins, gntR family LDP97_19050 PF07702 UTRA domain LDP97_19055 PF00367 phosphotransferase system, EIIB LDP97_19055 PF02378 Phosphotransferase system, EIIC LDP97_19060 PF02056 Family 4 glycosyl hydrolase LDP97_19060 PF11975 Family 4 glycosyl hydrolase C-terminal domain LDP97_19065 PF00356 Bacterial regulatory proteins, lacI family LDP97_19070 PF13458 Periplasmic binding protein LDP97_19075 PF02653 Branched-chain amino acid transport system / permease component LDP97_19080 PF02653 Branched-chain amino acid transport system / permease component LDP97_19080 PF11862 Domain of unknown function (DUF3382) LDP97_19085 PF00005 ABC transporter LDP97_19085 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDP97_19090 PF00005 ABC transporter LDP97_19105 PF00581 Rhodanese-like domain LDP97_19110 PF01694 Rhomboid family LDP97_19110 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LDP97_19115 PF12262 Bacterial virulence factor lipase N-terminal LDP97_19120 PF04380 Membrane fusogenic activity LDP97_19125 PF00175 Oxidoreductase NAD-binding domain LDP97_19130 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LDP97_19140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDP97_19140 PF07498 Rho termination factor, N-terminal domain LDP97_19140 PF07497 Rho termination factor, RNA-binding domain LDP97_19145 PF00085 Thioredoxin LDP97_19150 PF00270 DEAD/DEAH box helicase LDP97_19150 PF00271 Helicase conserved C-terminal domain LDP97_19155 PF02541 Ppx/GppA phosphatase family LDP97_19170 PF04445 Putative SAM-dependent methyltransferase LDP97_19175 PF00563 EAL domain LDP97_19175 PF00990 Diguanylate cyclase, GGDEF domain LDP97_19175 PF03707 Bacterial signalling protein N terminal repeat LDP97_19180 PF01432 Peptidase family M3 LDP97_19185 PF00490 Delta-aminolevulinic acid dehydratase LDP97_19190 PF01026 TatD related DNase LDP97_19195 PF00902 Sec-independent protein translocase protein (TatC) LDP97_19200 PF02416 mttA/Hcf106 family LDP97_19205 PF02416 mttA/Hcf106 family LDP97_19210 PF03109 ABC1 family LDP97_19215 PF02036 SCP-2 sterol transfer family LDP97_19220 PF01209 ubiE/COQ5 methyltransferase family LDP97_19225 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDP97_19230 PF07969 Amidohydrolase family LDP97_19270 PF03544 Gram-negative bacterial TonB protein C-terminal LDP97_19275 PF02472 Biopolymer transport protein ExbD/TolR LDP97_19280 PF01618 MotA/TolQ/ExbB proton channel family LDP97_19285 PF01618 MotA/TolQ/ExbB proton channel family LDP97_19295 PF03472 Autoinducer binding domain LDP97_19295 PF00196 Bacterial regulatory proteins, luxR family LDP97_19300 PF01380 SIS domain LDP97_19305 PF08220 DeoR-like helix-turn-helix domain LDP97_19305 PF00455 DeoR C terminal sensor domain LDP97_19310 PF00486 Transcriptional regulatory protein, C terminal LDP97_19310 PF00072 Response regulator receiver domain LDP97_19315 PF00672 HAMP domain LDP97_19315 PF00512 His Kinase A (phospho-acceptor) domain LDP97_19315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_19320 PF00905 Penicillin binding protein transpeptidase domain LDP97_19325 PF06123 Inner membrane protein CreD LDP97_19330 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_19330 PF12804 MobA-like NTP transferase domain LDP97_19330 PF14602 Hexapeptide repeat of succinyl-transferase LDP97_19335 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LDP97_19335 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LDP97_19340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDP97_19340 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDP97_19345 PF00231 ATP synthase LDP97_19350 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDP97_19350 PF00306 ATP synthase alpha/beta chain, C terminal domain LDP97_19350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDP97_19355 PF00213 ATP synthase delta (OSCP) subunit LDP97_19360 PF00430 ATP synthase B/B' CF(0) LDP97_19365 PF00137 ATP synthase subunit C LDP97_19370 PF00119 ATP synthase A chain LDP97_19380 PF17762 HTH domain found in ParB protein LDP97_19380 PF02195 ParB-like nuclease domain LDP97_19385 PF13614 AAA domain LDP97_19390 PF02527 rRNA small subunit methyltransferase G LDP97_19395 PF01134 Glucose inhibited division protein A LDP97_19395 PF13932 GidA associated domain LDP97_19400 PF00258 Flavodoxin LDP97_19405 PF07715 TonB-dependent Receptor Plug Domain LDP97_19405 PF00593 TonB dependent receptor LDP97_19410 PF00005 ABC transporter LDP97_19415 PF00005 ABC transporter LDP97_19425 PF01032 FecCD transport family LDP97_19430 PF01926 50S ribosome-binding GTPase LDP97_19430 PF12631 MnmE helical domain LDP97_19430 PF10396 GTP-binding protein TrmE N-terminus LDP97_19435 PF14849 YidC periplasmic domain LDP97_19435 PF02096 60Kd inner membrane protein LDP97_19440 PF01809 Putative membrane protein insertion efficiency factor LDP97_19445 PF00825 Ribonuclease P LDP97_19450 PF00468 Ribosomal protein L34 LDP97_19455 PF00005 ABC transporter LDP97_19460 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_19465 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_19470 PF00308 Bacterial dnaA protein LDP97_19470 PF11638 DnaA N-terminal domain LDP97_19470 PF08299 Bacterial dnaA protein helix-turn-helix LDP97_19475 PF00712 DNA polymerase III beta subunit, N-terminal domain LDP97_19475 PF02767 DNA polymerase III beta subunit, central domain LDP97_19475 PF02768 DNA polymerase III beta subunit, C-terminal domain LDP97_19480 PF02463 RecF/RecN/SMC N terminal domain LDP97_19485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_19485 PF01751 Toprim domain LDP97_19485 PF00204 DNA gyrase B LDP97_19485 PF00986 DNA gyrase B subunit, carboxyl terminus LDP97_19485 PF18053 DNA gyrase B subunit insert domain LDP97_19495 PF08279 HTH domain LDP97_19495 PF13280 WYL domain LDP97_19500 PF00011 Hsp20/alpha crystallin family LDP97_19505 PF00011 Hsp20/alpha crystallin family LDP97_19510 PF00155 Aminotransferase class I and II LDP97_19525 PF07690 Major Facilitator Superfamily LDP97_19530 PF00072 Response regulator receiver domain LDP97_19530 PF00486 Transcriptional regulatory protein, C terminal LDP97_19535 PF13493 Domain of unknown function (DUF4118) LDP97_19535 PF13492 GAF domain LDP97_19535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_19535 PF00512 His Kinase A (phospho-acceptor) domain LDP97_19535 PF02702 Osmosensitive K+ channel His kinase sensor domain LDP97_19540 PF02669 K+-transporting ATPase, c chain LDP97_19550 PF03814 Potassium-transporting ATPase A subunit LDP97_19555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDP97_19555 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_19560 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_19560 PF00512 His Kinase A (phospho-acceptor) domain LDP97_19560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_19565 PF00873 AcrB/AcrD/AcrF family LDP97_19570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_19575 PF00440 Bacterial regulatory proteins, tetR family LDP97_19605 PF02887 Pyruvate kinase, alpha/beta domain LDP97_19605 PF00224 Pyruvate kinase, barrel domain LDP97_19610 PF07690 Major Facilitator Superfamily LDP97_19620 PF00672 HAMP domain LDP97_19620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_19620 PF00512 His Kinase A (phospho-acceptor) domain LDP97_19625 PF02954 Bacterial regulatory protein, Fis family LDP97_19625 PF00072 Response regulator receiver domain LDP97_19625 PF14532 Sigma-54 interaction domain LDP97_19640 PF12146 Serine aminopeptidase, S33 LDP97_19645 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_19650 PF12105 SpoU, rRNA methylase, C-terminal LDP97_19650 PF00588 SpoU rRNA Methylase family LDP97_19655 PF13291 ACT domain LDP97_19655 PF04607 Region found in RelA / SpoT proteins LDP97_19655 PF02824 TGS domain LDP97_19660 PF01192 RNA polymerase Rpb6 LDP97_19665 PF00625 Guanylate kinase LDP97_19670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDP97_19685 PF00892 EamA-like transporter family LDP97_19705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_19705 PF03466 LysR substrate binding domain LDP97_19710 PF00579 tRNA synthetases class I (W and Y) LDP97_19715 PF00582 Universal stress protein family LDP97_19720 PF07055 Enoyl reductase FAD binding domain LDP97_19720 PF12241 Trans-2-enoyl-CoA reductase catalytic region LDP97_19720 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LDP97_19725 PF00990 Diguanylate cyclase, GGDEF domain LDP97_19730 PF00210 Ferritin-like domain LDP97_19740 PF07690 Major Facilitator Superfamily LDP97_19745 PF01810 LysE type translocator LDP97_19760 PF15976 CS1-pili formation C-terminal LDP97_19760 PF16967 E-set like domain LDP97_19765 PF18649 EcpB C-terminal domain LDP97_19770 PF16449 Fimbrillin MatB LDP97_19775 PF00196 Bacterial regulatory proteins, luxR family LDP97_19775 PF00072 Response regulator receiver domain LDP97_19780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_19780 PF00512 His Kinase A (phospho-acceptor) domain LDP97_19780 PF01627 Hpt domain LDP97_19780 PF00989 PAS fold LDP97_19780 PF00072 Response regulator receiver domain LDP97_19780 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDP97_19790 PF07694 5TMR of 5TMR-LYT LDP97_19790 PF06580 Histidine kinase LDP97_19790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_19795 PF00072 Response regulator receiver domain LDP97_19795 PF04397 LytTr DNA-binding domain LDP97_19800 PF07690 Major Facilitator Superfamily LDP97_19805 PF02222 ATP-grasp domain LDP97_19805 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LDP97_19810 PF00731 AIR carboxylase LDP97_19825 PF03466 LysR substrate binding domain LDP97_19825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_19830 PF07715 TonB-dependent Receptor Plug Domain LDP97_19830 PF00593 TonB dependent receptor LDP97_19835 PF01177 Asp/Glu/Hydantoin racemase LDP97_19870 PF00899 ThiF family LDP97_19875 PF02657 Fe-S metabolism associated domain LDP97_19880 PF00266 Aminotransferase class-V LDP97_19885 PF00580 UvrD/REP helicase N-terminal domain LDP97_19885 PF13361 UvrD-like helicase C-terminal domain LDP97_19890 PF03707 Bacterial signalling protein N terminal repeat LDP97_19890 PF00990 Diguanylate cyclase, GGDEF domain LDP97_19890 PF00563 EAL domain LDP97_19895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LDP97_19900 PF08240 Alcohol dehydrogenase GroES-like domain LDP97_19900 PF00107 Zinc-binding dehydrogenase LDP97_19905 PF00155 Aminotransferase class I and II LDP97_19910 PF00440 Bacterial regulatory proteins, tetR family LDP97_19910 PF08360 QacR-like protein, C-terminal region LDP97_19915 PF01370 NAD dependent epimerase/dehydratase family LDP97_19930 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) LDP97_19950 PF08340 Domain of unknown function (DUF1732) LDP97_19950 PF03755 YicC-like family, N-terminal region LDP97_19955 PF01138 3' exoribonuclease family, domain 1 LDP97_19955 PF03725 3' exoribonuclease family, domain 2 LDP97_19960 PF00156 Phosphoribosyl transferase domain LDP97_19965 PF00403 Heavy-metal-associated domain LDP97_19970 PF00376 MerR family regulatory protein LDP97_19970 PF09278 MerR, DNA binding LDP97_19975 PF00563 EAL domain LDP97_19975 PF00360 Phytochrome region LDP97_19975 PF00990 Diguanylate cyclase, GGDEF domain LDP97_19975 PF01590 GAF domain LDP97_19980 PF06288 Protein of unknown function (DUF1040) LDP97_19985 PF13746 4Fe-4S dicluster domain LDP97_19985 PF12801 4Fe-4S binding domain LDP97_19985 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LDP97_19990 PF01636 Phosphotransferase enzyme family LDP97_19995 PF01323 DSBA-like thioredoxin domain LDP97_20000 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_20005 PF00005 ABC transporter LDP97_20015 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LDP97_20015 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LDP97_20020 PF00857 Isochorismatase family LDP97_20030 PF04463 Protein of unknown function (DUF523) LDP97_20035 PF01553 Acyltransferase LDP97_20040 PF01553 Acyltransferase LDP97_20045 PF01078 Magnesium chelatase, subunit ChlI LDP97_20045 PF13335 Magnesium chelatase, subunit ChlI C-terminal LDP97_20050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDP97_20050 PF00205 Thiamine pyrophosphate enzyme, central domain LDP97_20050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDP97_20060 PF01063 Amino-transferase class IV LDP97_20065 PF00920 Dehydratase family LDP97_20070 PF00291 Pyridoxal-phosphate dependent enzyme LDP97_20070 PF00585 C-terminal regulatory domain of Threonine dehydratase LDP97_20075 PF01389 OmpA-like transmembrane domain LDP97_20075 PF00691 OmpA family LDP97_20085 PF00270 DEAD/DEAH box helicase LDP97_20085 PF00271 Helicase conserved C-terminal domain LDP97_20085 PF17764 3′ DNA-binding domain (3′BD) LDP97_20085 PF18074 Primosomal protein N C-terminal domain LDP97_20085 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LDP97_20090 PF01197 Ribosomal protein L31 LDP97_20095 PF11066 Protein of unknown function (DUF2867) LDP97_20095 PF13460 NAD(P)H-binding LDP97_20100 PF00390 Malic enzyme, N-terminal domain LDP97_20100 PF03949 Malic enzyme, NAD binding domain LDP97_20110 PF00512 His Kinase A (phospho-acceptor) domain LDP97_20110 PF00672 HAMP domain LDP97_20110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_20115 PF00486 Transcriptional regulatory protein, C terminal LDP97_20115 PF00072 Response regulator receiver domain LDP97_20120 PF05958 tRNA (Uracil-5-)-methyltransferase LDP97_20135 PF00128 Alpha amylase, catalytic domain LDP97_20135 PF02903 Alpha amylase, N-terminal ig-like domain LDP97_20150 PF00012 Hsp70 protein LDP97_20155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDP97_20155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDP97_20160 PF05981 CreA protein LDP97_20175 PF01258 Prokaryotic dksA/traR C4-type zinc finger LDP97_20180 PF00120 Glutamine synthetase, catalytic domain LDP97_20185 PF00202 Aminotransferase class-III LDP97_20190 PF13416 Bacterial extracellular solute-binding protein LDP97_20195 PF13416 Bacterial extracellular solute-binding protein LDP97_20200 PF08402 TOBE domain LDP97_20200 PF00005 ABC transporter LDP97_20205 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_20210 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_20215 PF03473 MOSC domain LDP97_20215 PF03475 3-alpha domain LDP97_20230 PF03061 Thioesterase superfamily LDP97_20235 PF09382 RQC domain LDP97_20235 PF16124 RecQ zinc-binding LDP97_20235 PF00570 HRDC domain LDP97_20235 PF00271 Helicase conserved C-terminal domain LDP97_20235 PF00270 DEAD/DEAH box helicase LDP97_20240 PF00034 Cytochrome c LDP97_20245 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LDP97_20255 PF02592 Putative vitamin uptake transporter LDP97_20260 PF03737 Aldolase/RraA LDP97_20265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_20265 PF00672 HAMP domain LDP97_20270 PF03448 MgtE intracellular N domain LDP97_20270 PF00571 CBS domain LDP97_20270 PF01769 Divalent cation transporter LDP97_20275 PF10414 Sirohaem synthase dimerisation region LDP97_20275 PF14824 Sirohaem biosynthesis protein central LDP97_20275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDP97_20280 PF01226 Formate/nitrite transporter LDP97_20285 PF13806 Rieske-like [2Fe-2S] domain LDP97_20290 PF04324 BFD-like [2Fe-2S] binding domain LDP97_20290 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDP97_20290 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDP97_20290 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_20290 PF18267 Rubredoxin NAD+ reductase C-terminal domain LDP97_20295 PF03466 LysR substrate binding domain LDP97_20295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_20300 PF07690 Major Facilitator Superfamily LDP97_20305 PF10431 C-terminal, D2-small domain, of ClpB protein LDP97_20305 PF00004 ATPase family associated with various cellular activities (AAA) LDP97_20305 PF07724 AAA domain (Cdc48 subfamily) LDP97_20310 PF00227 Proteasome subunit LDP97_20320 PF03485 Arginyl tRNA synthetase N terminal domain LDP97_20320 PF05746 DALR anticodon binding domain LDP97_20320 PF00750 tRNA synthetases class I (R) LDP97_20330 PF04542 Sigma-70 region 2 LDP97_20330 PF04545 Sigma-70, region 4 LDP97_20335 PF12973 ChrR Cupin-like domain LDP97_20340 PF02673 Bacitracin resistance protein BacA LDP97_20345 PF00248 Aldo/keto reductase family LDP97_20350 PF01263 Aldose 1-epimerase LDP97_20355 PF08544 GHMP kinases C terminal LDP97_20355 PF00288 GHMP kinases N terminal domain LDP97_20355 PF10509 Galactokinase galactose-binding signature LDP97_20360 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LDP97_20360 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LDP97_20365 PF16363 GDP-mannose 4,6 dehydratase LDP97_20370 PF00356 Bacterial regulatory proteins, lacI family LDP97_20375 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LDP97_20375 PF00703 Glycosyl hydrolases family 2 LDP97_20375 PF16353 Domain of unknown function(DUF4981) LDP97_20375 PF02929 Beta galactosidase small chain LDP97_20375 PF02837 Glycosyl hydrolases family 2, sugar binding domain LDP97_20380 PF13407 Periplasmic binding protein domain LDP97_20385 PF00005 ABC transporter LDP97_20390 PF02653 Branched-chain amino acid transport system / permease component LDP97_20395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_20395 PF02743 Cache domain LDP97_20395 PF00672 HAMP domain LDP97_20420 PF00696 Amino acid kinase family LDP97_20425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDP97_20425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDP97_20430 PF03606 C4-dicarboxylate anaerobic carrier LDP97_20435 PF01316 Arginine repressor, DNA binding domain LDP97_20435 PF02863 Arginine repressor, C-terminal domain LDP97_20440 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LDP97_20440 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LDP97_20445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDP97_20445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDP97_20465 PF02666 Phosphatidylserine decarboxylase LDP97_20470 PF02743 Cache domain LDP97_20470 PF00672 HAMP domain LDP97_20470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_20475 PF08212 Lipocalin-like domain LDP97_20480 PF06719 AraC-type transcriptional regulator N-terminus LDP97_20480 PF12833 Helix-turn-helix domain LDP97_20485 PF00465 Iron-containing alcohol dehydrogenase LDP97_20490 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDP97_20490 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LDP97_20490 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDP97_20495 PF02233 NAD(P) transhydrogenase beta subunit LDP97_20505 PF13309 HTH domain LDP97_20505 PF08348 YheO-like PAS domain LDP97_20510 PF03313 Serine dehydratase alpha chain LDP97_20515 PF00375 Sodium:dicarboxylate symporter family LDP97_20520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDP97_20520 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_20525 PF13525 Outer membrane lipoprotein LDP97_20530 PF00849 RNA pseudouridylate synthase LDP97_20530 PF01479 S4 domain LDP97_20535 PF02578 Multi-copper polyphenol oxidoreductase laccase LDP97_20540 PF10431 C-terminal, D2-small domain, of ClpB protein LDP97_20540 PF00004 ATPase family associated with various cellular activities (AAA) LDP97_20540 PF07724 AAA domain (Cdc48 subfamily) LDP97_20540 PF17871 AAA lid domain LDP97_20540 PF02861 Clp amino terminal domain, pathogenicity island component LDP97_20550 PF03590 Aspartate-ammonia ligase LDP97_20555 PF01037 Lrp/AsnC ligand binding domain LDP97_20565 PF10063 Uncharacterized integral membrane protein (DUF2301) LDP97_20570 PF00478 IMP dehydrogenase / GMP reductase domain LDP97_20570 PF00571 CBS domain LDP97_20590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_20590 PF00512 His Kinase A (phospho-acceptor) domain LDP97_20600 PF00072 Response regulator receiver domain LDP97_20600 PF00158 Sigma-54 interaction domain LDP97_20605 PF06496 Protein of unknown function (DUF1097) LDP97_20610 PF00174 Oxidoreductase molybdopterin binding domain LDP97_20615 PF01794 Ferric reductase like transmembrane component LDP97_20630 PF00072 Response regulator receiver domain LDP97_20630 PF00486 Transcriptional regulatory protein, C terminal LDP97_20635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_20645 PF00384 Molybdopterin oxidoreductase LDP97_20645 PF18364 Molybdopterin oxidoreductase N-terminal domain LDP97_20645 PF01568 Molydopterin dinucleotide binding domain LDP97_20650 PF03264 NapC/NirT cytochrome c family, N-terminal region LDP97_20655 PF01751 Toprim domain LDP97_20655 PF01131 DNA topoisomerase LDP97_20670 PF12852 Cupin LDP97_20670 PF12833 Helix-turn-helix domain LDP97_20675 PF02386 Cation transport protein LDP97_20680 PF02080 TrkA-C domain LDP97_20680 PF02254 TrkA-N domain LDP97_20685 PF01565 FAD binding domain LDP97_20685 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LDP97_20690 PF08279 HTH domain LDP97_20690 PF02237 Biotin protein ligase C terminal domain LDP97_20690 PF03099 Biotin/lipoate A/B protein ligase family LDP97_20695 PF00485 Phosphoribulokinase / Uridine kinase family LDP97_20710 PF03143 Elongation factor Tu C-terminal domain LDP97_20710 PF00009 Elongation factor Tu GTP binding domain LDP97_20710 PF03144 Elongation factor Tu domain 2 LDP97_20720 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LDP97_20725 PF00467 KOW motif LDP97_20725 PF02357 Transcription termination factor nusG LDP97_20730 PF03946 Ribosomal protein L11, N-terminal domain LDP97_20730 PF00298 Ribosomal protein L11, RNA binding domain LDP97_20735 PF00687 Ribosomal protein L1p/L10e family LDP97_20740 PF00466 Ribosomal protein L10 LDP97_20745 PF16320 Ribosomal protein L7/L12 dimerisation domain LDP97_20745 PF00542 Ribosomal protein L7/L12 C-terminal domain LDP97_20750 PF04563 RNA polymerase beta subunit LDP97_20750 PF04561 RNA polymerase Rpb2, domain 2 LDP97_20750 PF04565 RNA polymerase Rpb2, domain 3 LDP97_20750 PF10385 RNA polymerase beta subunit external 1 domain LDP97_20750 PF00562 RNA polymerase Rpb2, domain 6 LDP97_20750 PF04560 RNA polymerase Rpb2, domain 7 LDP97_20755 PF04998 RNA polymerase Rpb1, domain 5 LDP97_20755 PF05000 RNA polymerase Rpb1, domain 4 LDP97_20755 PF04997 RNA polymerase Rpb1, domain 1 LDP97_20755 PF00623 RNA polymerase Rpb1, domain 2 LDP97_20755 PF04983 RNA polymerase Rpb1, domain 3 LDP97_20765 PF13309 HTH domain LDP97_20765 PF08348 YheO-like PAS domain LDP97_20770 PF01042 Endoribonuclease L-PSP LDP97_20775 PF02635 DsrE/DsrF-like family LDP97_20780 PF02635 DsrE/DsrF-like family LDP97_20785 PF04077 DsrH like protein LDP97_20790 PF00164 Ribosomal protein S12/S23 LDP97_20795 PF00177 Ribosomal protein S7p/S5e LDP97_20800 PF00679 Elongation factor G C-terminus LDP97_20800 PF14492 Elongation Factor G, domain II LDP97_20800 PF03764 Elongation factor G, domain IV LDP97_20800 PF00009 Elongation factor Tu GTP binding domain LDP97_20800 PF03144 Elongation factor Tu domain 2 LDP97_20805 PF03143 Elongation factor Tu C-terminal domain LDP97_20805 PF00009 Elongation factor Tu GTP binding domain LDP97_20805 PF03144 Elongation factor Tu domain 2 LDP97_20850 PF00860 Permease family LDP97_20855 PF02733 Dak1 domain LDP97_20860 PF02734 DAK2 domain LDP97_20865 PF03610 PTS system fructose IIA component LDP97_20865 PF05524 PEP-utilising enzyme, N-terminal LDP97_20865 PF00391 PEP-utilising enzyme, mobile domain LDP97_20865 PF00381 PTS HPr component phosphorylation site LDP97_20870 PF00465 Iron-containing alcohol dehydrogenase LDP97_20875 PF02954 Bacterial regulatory protein, Fis family LDP97_20875 PF00989 PAS fold LDP97_20875 PF00158 Sigma-54 interaction domain LDP97_20880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_20880 PF03466 LysR substrate binding domain LDP97_20885 PF04371 Porphyromonas-type peptidyl-arginine deiminase LDP97_20890 PF00106 short chain dehydrogenase LDP97_20895 PF01594 AI-2E family transporter LDP97_20900 PF00293 NUDIX domain LDP97_20925 PF00199 Catalase LDP97_20925 PF06628 Catalase-related immune-responsive LDP97_20930 PF00583 Acetyltransferase (GNAT) family LDP97_20950 PF00990 Diguanylate cyclase, GGDEF domain LDP97_20960 PF08402 TOBE domain LDP97_20960 PF00005 ABC transporter LDP97_20970 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_20985 PF00392 Bacterial regulatory proteins, gntR family LDP97_20985 PF07702 UTRA domain LDP97_20995 PF03466 LysR substrate binding domain LDP97_20995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_21005 PF17954 Quercetinase C-terminal cupin domain LDP97_21005 PF02678 Pirin LDP97_21010 PF07681 DoxX LDP97_21015 PF17946 RecC C-terminal domain LDP97_21020 PF12705 PD-(D/E)XK nuclease superfamily LDP97_21020 PF00580 UvrD/REP helicase N-terminal domain LDP97_21020 PF13361 UvrD-like helicase C-terminal domain LDP97_21025 PF13538 UvrD-like helicase C-terminal domain LDP97_21035 PF02463 RecF/RecN/SMC N terminal domain LDP97_21040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDP97_21050 PF00990 Diguanylate cyclase, GGDEF domain LDP97_21070 PF00486 Transcriptional regulatory protein, C terminal LDP97_21070 PF00072 Response regulator receiver domain LDP97_21075 PF00512 His Kinase A (phospho-acceptor) domain LDP97_21075 PF00672 HAMP domain LDP97_21075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_21080 PF00563 EAL domain LDP97_21080 PF00360 Phytochrome region LDP97_21080 PF00990 Diguanylate cyclase, GGDEF domain LDP97_21080 PF01590 GAF domain LDP97_21085 PF00593 TonB dependent receptor LDP97_21085 PF07715 TonB-dependent Receptor Plug Domain LDP97_21090 PF00313 'Cold-shock' DNA-binding domain LDP97_21100 PF01545 Cation efflux family LDP97_21100 PF16916 Dimerisation domain of Zinc Transporter LDP97_21110 PF00436 Single-strand binding protein family LDP97_21115 PF00196 Bacterial regulatory proteins, luxR family LDP97_21120 PF00005 ABC transporter LDP97_21120 PF17760 UvrA interaction domain LDP97_21120 PF17755 UvrA DNA-binding domain LDP97_21130 PF00990 Diguanylate cyclase, GGDEF domain LDP97_21135 PF03922 OmpW family LDP97_21140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_21140 PF00672 HAMP domain LDP97_21155 PF02219 Methylenetetrahydrofolate reductase LDP97_21165 PF03594 Benzoate membrane transport protein LDP97_21170 PF07883 Cupin domain LDP97_21170 PF01381 Helix-turn-helix LDP97_21205 PF04363 Protein of unknown function (DUF496) LDP97_21215 PF04751 Protein of unknown function (DUF615) LDP97_21220 PF01523 Putative modulator of DNA gyrase LDP97_21225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDP97_21230 PF01722 BolA-like protein LDP97_21240 PF05494 MlaC protein LDP97_21245 PF02470 MlaD protein LDP97_21250 PF02405 Permease MlaE LDP97_21255 PF00005 ABC transporter LDP97_21260 PF00571 CBS domain LDP97_21260 PF01380 SIS domain LDP97_21270 PF06835 Lipopolysaccharide-assembly, LptC-related LDP97_21275 PF03968 OstA-like protein LDP97_21280 PF00005 ABC transporter LDP97_21280 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDP97_21285 PF04963 Sigma-54 factor, core binding domain LDP97_21285 PF00309 Sigma-54 factor, Activator interacting domain (AID) LDP97_21285 PF04552 Sigma-54, DNA binding domain LDP97_21290 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LDP97_21295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDP97_21300 PF03668 P-loop ATPase protein family LDP97_21305 PF00381 PTS HPr component phosphorylation site LDP97_21310 PF08279 HTH domain LDP97_21310 PF00874 PRD domain LDP97_21310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDP97_21310 PF05043 Mga helix-turn-helix domain LDP97_21315 PF07071 KDGP aldolase LDP97_21320 PF03841 L-seryl-tRNA selenium transferase LDP97_21325 PF01979 Amidohydrolase family LDP97_21355 PF13180 PDZ domain LDP97_21360 PF13180 PDZ domain LDP97_21360 PF00595 PDZ domain LDP97_21370 PF03969 AFG1-like ATPase LDP97_21375 PF00572 Ribosomal protein L13 LDP97_21380 PF00380 Ribosomal protein S9/S16 LDP97_21385 PF00355 Rieske [2Fe-2S] domain LDP97_21385 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LDP97_21390 PF00032 Cytochrome b(C-terminal)/b6/petD LDP97_21390 PF00033 Cytochrome b/b6/petB LDP97_21395 PF02167 Cytochrome C1 family LDP97_21400 PF00043 Glutathione S-transferase, C-terminal domain LDP97_21400 PF02798 Glutathione S-transferase, N-terminal domain LDP97_21405 PF04386 Stringent starvation protein B LDP97_21410 PF04972 BON domain LDP97_21415 PF13580 SIS domain LDP97_21420 PF02021 Uncharacterised protein family UPF0102 LDP97_21425 PF04348 LppC putative lipoprotein LDP97_21430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDP97_21440 PF02381 MraZ protein, putative antitoxin-like LDP97_21445 PF01795 MraW methylase family LDP97_21450 PF04999 Cell division protein FtsL LDP97_21455 PF03717 Penicillin-binding Protein dimerisation domain LDP97_21455 PF00905 Penicillin binding protein transpeptidase domain LDP97_21460 PF01225 Mur ligase family, catalytic domain LDP97_21460 PF02875 Mur ligase family, glutamate ligase domain LDP97_21460 PF08245 Mur ligase middle domain LDP97_21465 PF01225 Mur ligase family, catalytic domain LDP97_21465 PF02875 Mur ligase family, glutamate ligase domain LDP97_21465 PF08245 Mur ligase middle domain LDP97_21470 PF00953 Glycosyl transferase family 4 LDP97_21470 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LDP97_21475 PF02875 Mur ligase family, glutamate ligase domain LDP97_21475 PF08245 Mur ligase middle domain LDP97_21480 PF01098 Cell cycle protein LDP97_21485 PF04101 Glycosyltransferase family 28 C-terminal domain LDP97_21485 PF03033 Glycosyltransferase family 28 N-terminal domain LDP97_21490 PF01225 Mur ligase family, catalytic domain LDP97_21490 PF02875 Mur ligase family, glutamate ligase domain LDP97_21490 PF08245 Mur ligase middle domain LDP97_21495 PF03799 Cell division protein FtsQ LDP97_21495 PF08478 POTRA domain, FtsQ-type LDP97_21500 PF02491 SHS2 domain inserted in FTSA LDP97_21505 PF12327 FtsZ family, C-terminal domain LDP97_21505 PF00091 Tubulin/FtsZ family, GTPase domain LDP97_21510 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LDP97_21520 PF02810 SEC-C motif LDP97_21520 PF07516 SecA Wing and Scaffold domain LDP97_21520 PF01043 SecA preprotein cross-linking domain LDP97_21520 PF07517 SecA DEAD-like domain LDP97_21530 PF00293 NUDIX domain LDP97_21535 PF03884 DNA gyrase inhibitor YacG LDP97_21540 PF07072 Cell division protein LDP97_21545 PF01121 Dephospho-CoA kinase LDP97_21550 PF06750 Bacterial Peptidase A24 N-terminal domain LDP97_21550 PF01478 Type IV leader peptidase family LDP97_21555 PF00482 Type II secretion system (T2SS), protein F LDP97_21560 PF00437 Type II/IV secretion system protein LDP97_21560 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LDP97_21565 PF07963 Prokaryotic N-terminal methylation motif LDP97_21570 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LDP97_21570 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LDP97_21580 PF01510 N-acetylmuramoyl-L-alanine amidase LDP97_21585 PF07729 FCD domain LDP97_21585 PF00392 Bacterial regulatory proteins, gntR family LDP97_21590 PF17831 Pyruvate dehydrogenase E1 component middle domain LDP97_21590 PF00456 Transketolase, thiamine diphosphate binding domain LDP97_21595 PF02817 e3 binding domain LDP97_21595 PF00364 Biotin-requiring enzyme LDP97_21595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDP97_21600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDP97_21600 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDP97_21605 PF05231 MASE1 LDP97_21605 PF00563 EAL domain LDP97_21605 PF08447 PAS fold LDP97_21605 PF08448 PAS fold LDP97_21605 PF13426 PAS domain LDP97_21605 PF00990 Diguanylate cyclase, GGDEF domain LDP97_21615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_21615 PF00672 HAMP domain LDP97_21615 PF12729 Four helix bundle sensory module for signal transduction LDP97_21620 PF12729 Four helix bundle sensory module for signal transduction LDP97_21620 PF00672 HAMP domain LDP97_21620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_21625 PF01734 Patatin-like phospholipase LDP97_21630 PF11791 Aconitate B N-terminal domain LDP97_21630 PF06434 Aconitate hydratase 2 N-terminus LDP97_21630 PF00330 Aconitase family (aconitate hydratase) LDP97_21640 PF03466 LysR substrate binding domain LDP97_21640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_21645 PF01810 LysE type translocator LDP97_21655 PF02492 CobW/HypB/UreG, nucleotide-binding domain LDP97_21655 PF07683 Cobalamin synthesis protein cobW C-terminal domain LDP97_21660 PF07690 Major Facilitator Superfamily LDP97_21670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LDP97_21675 PF02152 Dihydroneopterin aldolase LDP97_21680 PF02660 Glycerol-3-phosphate acyltransferase LDP97_21720 PF07670 Nucleoside recognition LDP97_21725 PF01584 CheW-like domain LDP97_21725 PF00072 Response regulator receiver domain LDP97_21730 PF00106 short chain dehydrogenase LDP97_21735 PF13718 GNAT acetyltransferase 2 LDP97_21735 PF17176 tRNA-binding domain LDP97_21735 PF05127 Helicase LDP97_21735 PF08351 Domain of unknown function (DUF1726) LDP97_21750 PF00210 Ferritin-like domain LDP97_21760 PF02142 MGS-like domain LDP97_21775 PF17763 Glutaminase/Asparaginase C-terminal domain LDP97_21775 PF00710 Asparaginase, N-terminal LDP97_21790 PF00356 Bacterial regulatory proteins, lacI family LDP97_21795 PF00367 phosphotransferase system, EIIB LDP97_21795 PF02378 Phosphotransferase system, EIIC LDP97_21800 PF11941 Domain of unknown function (DUF3459) LDP97_21800 PF00128 Alpha amylase, catalytic domain LDP97_21805 PF12464 Maltose acetyltransferase LDP97_21805 PF14602 Hexapeptide repeat of succinyl-transferase LDP97_21810 PF01037 Lrp/AsnC ligand binding domain LDP97_21815 PF00892 EamA-like transporter family LDP97_21825 PF00171 Aldehyde dehydrogenase family LDP97_21830 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_21835 PF00528 Binding-protein-dependent transport system inner membrane component LDP97_21840 PF08402 TOBE domain LDP97_21840 PF00005 ABC transporter LDP97_21845 PF13416 Bacterial extracellular solute-binding protein LDP97_21850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_21850 PF03466 LysR substrate binding domain LDP97_21855 PF03553 Na+/H+ antiporter family LDP97_21875 PF08323 Starch synthase catalytic domain LDP97_21875 PF00534 Glycosyl transferases group 1 LDP97_21880 PF00483 Nucleotidyl transferase LDP97_21885 PF08468 Methyltransferase small domain N-terminal LDP97_21885 PF05175 Methyltransferase small domain LDP97_21890 PF00701 Dihydrodipicolinate synthetase family LDP97_21895 PF00360 Phytochrome region LDP97_21895 PF01590 GAF domain LDP97_21895 PF00990 Diguanylate cyclase, GGDEF domain LDP97_21895 PF00563 EAL domain LDP97_21905 PF13419 Haloacid dehalogenase-like hydrolase LDP97_21910 PF17209 Hfq protein LDP97_21915 PF04403 Paraquat-inducible protein A LDP97_21920 PF02470 MlaD protein LDP97_21925 PF03886 ABC-type transport auxiliary lipoprotein component LDP97_21930 PF00691 OmpA family LDP97_21930 PF01389 OmpA-like transmembrane domain LDP97_21940 PF00657 GDSL-like Lipase/Acylhydrolase LDP97_21945 PF04076 Bacterial OB fold (BOF) protein LDP97_21950 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LDP97_21950 PF01464 Transglycosylase SLT domain LDP97_21955 PF04362 Bacterial Fe(2+) trafficking LDP97_21960 PF10576 Iron-sulfur binding domain of endonuclease III LDP97_21960 PF00633 Helix-hairpin-helix motif LDP97_21960 PF00730 HhH-GPD superfamily base excision DNA repair protein LDP97_21960 PF14815 NUDIX domain LDP97_21965 PF16537 Type II secretion system protein B LDP97_21970 PF01471 Putative peptidoglycan binding domain LDP97_21970 PF13401 AAA domain LDP97_21975 PF01743 Poly A polymerase head domain LDP97_21975 PF12627 Probable RNA and SrmB- binding site of polymerase A LDP97_21975 PF01966 HD domain LDP97_21990 PF04172 LrgB-like family LDP97_21995 PF03788 LrgA family LDP97_22000 PF03466 LysR substrate binding domain LDP97_22000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_22005 PF00392 Bacterial regulatory proteins, gntR family LDP97_22005 PF00155 Aminotransferase class I and II LDP97_22025 PF04073 Aminoacyl-tRNA editing domain LDP97_22030 PF01384 Phosphate transporter family LDP97_22035 PF01865 Protein of unknown function DUF47 LDP97_22050 PF03279 Bacterial lipid A biosynthesis acyltransferase LDP97_22055 PF00294 pfkB family carbohydrate kinase LDP97_22055 PF01467 Cytidylyltransferase-like LDP97_22060 PF02321 Outer membrane efflux protein LDP97_22065 PF00293 NUDIX domain LDP97_22070 PF06853 Protein of unknown function (DUF1249) LDP97_22075 PF00149 Calcineurin-like phosphoesterase LDP97_22080 PF05728 Uncharacterised protein family (UPF0227) LDP97_22085 PF00293 NUDIX domain LDP97_22095 PF07869 Protein of unknown function (DUF1656) LDP97_22100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDP97_22100 PF00529 HlyD membrane-fusion protein of T1SS LDP97_22105 PF04632 Fusaric acid resistance protein family LDP97_22110 PF00204 DNA gyrase B LDP97_22110 PF00986 DNA gyrase B subunit, carboxyl terminus LDP97_22110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDP97_22110 PF01751 Toprim domain LDP97_22115 PF03989 DNA gyrase C-terminal domain, beta-propeller LDP97_22115 PF00521 DNA gyrase/topoisomerase IV, subunit A LDP97_22150 PF00226 DnaJ domain LDP97_22150 PF01556 DnaJ C terminal domain LDP97_22150 PF00684 DnaJ central domain LDP97_22155 PF00578 AhpC/TSA family LDP97_22180 PF01553 Acyltransferase LDP97_22185 PF04012 PspA/IM30 family LDP97_22200 PF01541 GIY-YIG catalytic domain LDP97_22210 PF00892 EamA-like transporter family LDP97_22215 PF03167 Uracil DNA glycosylase superfamily LDP97_22220 PF00892 EamA-like transporter family LDP97_22230 PF00950 ABC 3 transport family LDP97_22235 PF00005 ABC transporter LDP97_22240 PF01297 Zinc-uptake complex component A periplasmic LDP97_22260 PF01476 LysM domain LDP97_22260 PF08525 Opacity-associated protein A N-terminal motif LDP97_22260 PF01551 Peptidase family M23 LDP97_22265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDP97_22270 PF04222 Protein of unknown function (DUF416) LDP97_22285 PF02028 BCCT, betaine/carnitine/choline family transporter LDP97_22290 PF00488 MutS domain V LDP97_22290 PF05190 MutS family domain IV LDP97_22290 PF05188 MutS domain II LDP97_22290 PF05192 MutS domain III LDP97_22290 PF01624 MutS domain I LDP97_22295 PF00589 Phage integrase family LDP97_22295 PF13356 Arm DNA-binding domain LDP97_22330 PF02464 Competence-damaged protein LDP97_22335 PF00154 recA bacterial DNA recombination protein LDP97_22340 PF02631 RecX family LDP97_22345 PF02272 DHHA1 domain LDP97_22345 PF01411 tRNA synthetases class II (A) LDP97_22345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDP97_22350 PF13840 ACT domain LDP97_22350 PF01842 ACT domain LDP97_22350 PF00696 Amino acid kinase family LDP97_22355 PF02599 Global regulator protein family LDP97_22395 PF00768 D-alanyl-D-alanine carboxypeptidase LDP97_22400 PF09335 SNARE associated Golgi protein LDP97_22405 PF03471 Transporter associated domain LDP97_22405 PF00571 CBS domain LDP97_22405 PF01595 Cyclin M transmembrane N-terminal domain LDP97_22410 PF10458 Valyl tRNA synthetase tRNA binding arm LDP97_22410 PF08264 Anticodon-binding domain of tRNA LDP97_22410 PF00133 tRNA synthetases class I (I, L, M and V) LDP97_22415 PF04364 DNA polymerase III chi subunit, HolC LDP97_22420 PF00883 Cytosol aminopeptidase family, catalytic domain LDP97_22420 PF02789 Cytosol aminopeptidase family, N-terminal domain LDP97_22425 PF03739 Lipopolysaccharide export system permease LptF/LptG LDP97_22430 PF03739 Lipopolysaccharide export system permease LptF/LptG LDP97_22445 PF00589 Phage integrase family LDP97_22445 PF13356 Arm DNA-binding domain LDP97_22460 PF10548 P22AR C-terminal domain LDP97_22460 PF08346 AntA/AntB antirepressor LDP97_22495 PF00909 Ammonium Transporter Family LDP97_22500 PF01938 TRAM domain LDP97_22500 PF05958 tRNA (Uracil-5-)-methyltransferase LDP97_22510 PF07963 Prokaryotic N-terminal methylation motif LDP97_22515 PF01026 TatD related DNase LDP97_22520 PF07670 Nucleoside recognition LDP97_22520 PF01773 Na+ dependent nucleoside transporter N-terminus LDP97_22520 PF07662 Na+ dependent nucleoside transporter C-terminus LDP97_22530 PF01791 DeoC/LacD family aldolase LDP97_22535 PF02885 Glycosyl transferase family, helical bundle domain LDP97_22535 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LDP97_22535 PF00591 Glycosyl transferase family, a/b domain LDP97_22540 PF01676 Metalloenzyme superfamily LDP97_22545 PF01048 Phosphorylase superfamily LDP97_22550 PF00563 EAL domain LDP97_22550 PF08448 PAS fold LDP97_22550 PF08447 PAS fold LDP97_22550 PF05231 MASE1 LDP97_22550 PF00990 Diguanylate cyclase, GGDEF domain LDP97_22550 PF13426 PAS domain LDP97_22560 PF18429 Domain of unknown function (DUF5609) LDP97_22575 PF18073 Rubredoxin metal binding domain LDP97_22580 PF07238 PilZ domain LDP97_22585 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LDP97_22590 PF00216 Bacterial DNA-binding protein LDP97_22605 PF01207 Dihydrouridine synthase (Dus) LDP97_22610 PF01475 Ferric uptake regulator family LDP97_22625 PF05525 Branched-chain amino acid transport protein LDP97_22630 PF05525 Branched-chain amino acid transport protein LDP97_22635 PF05175 Methyltransferase small domain LDP97_22640 PF00271 Helicase conserved C-terminal domain LDP97_22640 PF00270 DEAD/DEAH box helicase LDP97_22645 PF03883 Peroxide stress protein YaaA LDP97_22650 PF00437 Type II/IV secretion system protein LDP97_22655 PF00437 Type II/IV secretion system protein LDP97_22660 PF01168 Alanine racemase, N-terminal domain LDP97_22665 PF14748 Pyrroline-5-carboxylate reductase dimerisation LDP97_22665 PF03807 NADP oxidoreductase coenzyme F420-dependent LDP97_22670 PF02325 YGGT family LDP97_22675 PF02594 Uncharacterised ACR, YggU family COG1872 LDP97_22690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDP97_22700 PF00132 Bacterial transferase hexapeptide (six repeats) LDP97_22705 PF10952 Protein of unknown function (DUF2753) LDP97_22710 PF00378 Enoyl-CoA hydratase/isomerase LDP97_22725 PF00106 short chain dehydrogenase LDP97_22730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDP97_22730 PF04073 Aminoacyl-tRNA editing domain LDP97_22730 PF03129 Anticodon binding domain LDP97_22735 PF00672 HAMP domain LDP97_22735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_22740 PF07499 RuvA, C-terminal domain LDP97_22740 PF01330 RuvA N terminal domain LDP97_22745 PF17864 RuvB AAA lid domain LDP97_22745 PF05491 RuvB C-terminal winged helix domain LDP97_22745 PF05496 Holliday junction DNA helicase RuvB P-loop domain LDP97_22750 PF01654 Cytochrome bd terminal oxidase subunit I LDP97_22755 PF02322 Cytochrome bd terminal oxidase subunit II LDP97_22760 PF08173 Membrane bound YbgT-like protein LDP97_22765 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LDP97_22770 PF03061 Thioesterase superfamily LDP97_22775 PF01618 MotA/TolQ/ExbB proton channel family LDP97_22780 PF02472 Biopolymer transport protein ExbD/TolR LDP97_22790 PF07676 WD40-like Beta Propeller Repeat LDP97_22790 PF04052 TolB amino-terminal domain LDP97_22795 PF00691 OmpA family LDP97_22800 PF13174 Tetratricopeptide repeat LDP97_22800 PF16331 TolA binding protein trimerisation LDP97_22875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_22875 PF00672 HAMP domain LDP97_22880 PF02445 Quinolinate synthetase A protein LDP97_22885 PF01263 Aldose 1-epimerase LDP97_22890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDP97_22890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDP97_22895 PF02446 4-alpha-glucanotransferase LDP97_22900 PF00128 Alpha amylase, catalytic domain LDP97_22900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDP97_22900 PF02806 Alpha amylase, C-terminal all-beta domain LDP97_22905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDP97_22905 PF00128 Alpha amylase, catalytic domain LDP97_22910 PF01641 SelR domain LDP97_22920 PF00293 NUDIX domain LDP97_22925 PF16884 N-terminal domain of oxidoreductase LDP97_22925 PF00107 Zinc-binding dehydrogenase LDP97_22930 PF02566 OsmC-like protein LDP97_22935 PF01047 MarR family LDP97_22950 PF01037 Lrp/AsnC ligand binding domain LDP97_22965 PF07690 Major Facilitator Superfamily LDP97_22985 PF00209 Sodium:neurotransmitter symporter family LDP97_22995 PF00209 Sodium:neurotransmitter symporter family LDP97_23020 PF00392 Bacterial regulatory proteins, gntR family LDP97_23020 PF00155 Aminotransferase class I and II LDP97_23030 PF01810 LysE type translocator LDP97_23035 PF01177 Asp/Glu/Hydantoin racemase LDP97_23040 PF00394 Multicopper oxidase LDP97_23040 PF07732 Multicopper oxidase LDP97_23040 PF07731 Multicopper oxidase LDP97_23050 PF04074 YhcH/YjgK/YiaL LDP97_23055 PF00871 Acetokinase family LDP97_23060 PF00924 Mechanosensitive ion channel LDP97_23065 PF17969 L,D-transpeptidase C-terminal domain LDP97_23065 PF03734 L,D-transpeptidase catalytic domain LDP97_23070 PF00474 Sodium:solute symporter family LDP97_23075 PF00561 alpha/beta hydrolase fold LDP97_23115 PF02525 Flavodoxin-like fold LDP97_23120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDP97_23120 PF03466 LysR substrate binding domain LDP97_23125 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LDP97_23135 PF12848 ABC transporter LDP97_23135 PF00005 ABC transporter LDP97_23140 PF00571 CBS domain LDP97_23140 PF01380 SIS domain LDP97_23145 PF01957 NfeD-like C-terminal, partner-binding LDP97_23150 PF16200 C-terminal region of band_7 LDP97_23150 PF01145 SPFH domain / Band 7 family LDP97_23155 PF10414 Sirohaem synthase dimerisation region LDP97_23155 PF14824 Sirohaem biosynthesis protein central LDP97_23155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDP97_23160 PF01507 Phosphoadenosine phosphosulfate reductase family LDP97_23165 PF00009 Elongation factor Tu GTP binding domain LDP97_23170 PF03600 Citrate transporter LDP97_23170 PF02080 TrkA-C domain LDP97_23205 PF08447 PAS fold LDP97_23205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDP97_23225 PF00005 ABC transporter LDP97_23240 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LDP97_23255 PF00719 Inorganic pyrophosphatase LDP97_23260 PF02875 Mur ligase family, glutamate ligase domain LDP97_23260 PF08245 Mur ligase middle domain LDP97_23260 PF01225 Mur ligase family, catalytic domain LDP97_23265 PF02441 Flavoprotein LDP97_23270 PF00440 Bacterial regulatory proteins, tetR family LDP97_23275 PF00156 Phosphoribosyl transferase domain LDP97_23280 PF00005 ABC transporter LDP97_23285 PF01061 ABC-2 type transporter LDP97_23290 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component LDP97_23295 PF01869 BadF/BadG/BcrA/BcrD ATPase family LDP97_23315 PF02569 Pantoate-beta-alanine ligase LDP97_23320 PF02548 Ketopantoate hydroxymethyltransferase LDP97_23325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LDP97_23330 PF12627 Probable RNA and SrmB- binding site of polymerase A LDP97_23330 PF12626 Polymerase A arginine-rich C-terminus LDP97_23330 PF01743 Poly A polymerase head domain LDP97_23335 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDP97_23340 PF01258 Prokaryotic dksA/traR C4-type zinc finger LDP97_23345 PF03749 Sugar fermentation stimulation protein RE domain LDP97_23345 PF17746 SfsA N-terminal OB domain LDP97_23355 PF00271 Helicase conserved C-terminal domain LDP97_23355 PF08482 ATP-dependent helicase C-terminal LDP97_23355 PF00270 DEAD/DEAH box helicase LDP97_23355 PF04408 Helicase associated domain (HA2) LDP97_23360 PF00912 Transglycosylase LDP97_23360 PF14814 Bifunctional transglycosylase second domain LDP97_23360 PF00905 Penicillin binding protein transpeptidase domain LDP97_23365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDP97_23370 PF00893 Small Multidrug Resistance protein LDP97_23375 PF00893 Small Multidrug Resistance protein LDP97_23385 PF11849 Domain of unknown function (DUF3369) LDP97_23395 PF01569 PAP2 superfamily LDP97_23410 PF00202 Aminotransferase class-III LDP97_23415 PF00654 Voltage gated chloride channel LDP97_23425 PF01521 Iron-sulphur cluster biosynthesis LDP97_23450 PF01810 LysE type translocator LDP97_23465 PF05930 Prophage CP4-57 regulatory protein (AlpA) LDP97_23525 PF04002 RadC-like JAB domain LDP97_23575 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LDP97_23580 PF02384 N-6 DNA Methylase LDP97_23600 PF02463 RecF/RecN/SMC N terminal domain LDP97_23610 PF02954 Bacterial regulatory protein, Fis family LDP97_23615 PF01207 Dihydrouridine synthase (Dus) LDP97_23620 PF02321 Outer membrane efflux protein LDP97_23625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion