locus-tag class description NRZ28_00005 PF00308 Bacterial dnaA protein NRZ28_00005 PF08299 Bacterial dnaA protein helix-turn-helix NRZ28_00005 PF11638 DnaA N-terminal domain NRZ28_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NRZ28_00010 PF02767 DNA polymerase III beta subunit, central domain NRZ28_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NRZ28_00015 PF02463 RecF/RecN/SMC N terminal domain NRZ28_00020 PF00204 DNA gyrase B NRZ28_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NRZ28_00020 PF18053 DNA gyrase B subunit insert domain NRZ28_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_00020 PF01751 Toprim domain NRZ28_00030 PF13280 WYL domain NRZ28_00030 PF08279 HTH domain NRZ28_00035 PF01965 DJ-1/PfpI family NRZ28_00035 PF12833 Helix-turn-helix domain NRZ28_00040 PF12706 Beta-lactamase superfamily domain NRZ28_00045 PF00011 Hsp20/alpha crystallin family NRZ28_00050 PF00011 Hsp20/alpha crystallin family NRZ28_00055 PF00155 Aminotransferase class I and II NRZ28_00070 PF07690 Major Facilitator Superfamily NRZ28_00075 PF00072 Response regulator receiver domain NRZ28_00075 PF00486 Transcriptional regulatory protein, C terminal NRZ28_00080 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_00080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_00080 PF13492 GAF domain NRZ28_00080 PF02702 Osmosensitive K+ channel His kinase sensor domain NRZ28_00080 PF13493 Domain of unknown function (DUF4118) NRZ28_00085 PF02669 K+-transporting ATPase, c chain NRZ28_00095 PF03814 Potassium-transporting ATPase A subunit NRZ28_00100 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_00100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRZ28_00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_00105 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_00105 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_00110 PF00873 AcrB/AcrD/AcrF family NRZ28_00115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_00120 PF00440 Bacterial regulatory proteins, tetR family NRZ28_00150 PF00224 Pyruvate kinase, barrel domain NRZ28_00150 PF02887 Pyruvate kinase, alpha/beta domain NRZ28_00155 PF07690 Major Facilitator Superfamily NRZ28_00165 PF00672 HAMP domain NRZ28_00165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_00165 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_00170 PF02954 Bacterial regulatory protein, Fis family NRZ28_00170 PF00072 Response regulator receiver domain NRZ28_00170 PF14532 Sigma-54 interaction domain NRZ28_00185 PF12146 Serine aminopeptidase, S33 NRZ28_00190 PF00132 Bacterial transferase hexapeptide (six repeats) NRZ28_00195 PF12105 SpoU, rRNA methylase, C-terminal NRZ28_00195 PF00588 SpoU rRNA Methylase family NRZ28_00200 PF13291 ACT domain NRZ28_00200 PF02824 TGS domain NRZ28_00200 PF04607 Region found in RelA / SpoT proteins NRZ28_00205 PF01192 RNA polymerase Rpb6 NRZ28_00210 PF00625 Guanylate kinase NRZ28_00215 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRZ28_00230 PF00892 EamA-like transporter family NRZ28_00250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_00250 PF03466 LysR substrate binding domain NRZ28_00255 PF00579 tRNA synthetases class I (W and Y) NRZ28_00260 PF00582 Universal stress protein family NRZ28_00270 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRZ28_00270 PF07055 Enoyl reductase FAD binding domain NRZ28_00270 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRZ28_00275 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_00280 PF00210 Ferritin-like domain NRZ28_00290 PF07690 Major Facilitator Superfamily NRZ28_00295 PF01810 LysE type translocator NRZ28_00305 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NRZ28_00305 PF02753 Pili assembly chaperone PapD, C-terminal domain NRZ28_00310 PF00577 Outer membrane usher protein NRZ28_00310 PF13953 PapC C-terminal domain NRZ28_00310 PF13954 PapC N-terminal domain NRZ28_00320 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NRZ28_00320 PF02753 Pili assembly chaperone PapD, C-terminal domain NRZ28_00330 PF00196 Bacterial regulatory proteins, luxR family NRZ28_00330 PF00072 Response regulator receiver domain NRZ28_00335 PF01627 Hpt domain NRZ28_00335 PF00989 PAS fold NRZ28_00335 PF00072 Response regulator receiver domain NRZ28_00335 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_00335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_00335 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_00350 PF01810 LysE type translocator NRZ28_00365 PF16967 E-set like domain NRZ28_00365 PF15976 CS1-pili formation C-terminal NRZ28_00370 PF18649 EcpB C-terminal domain NRZ28_00375 PF16449 Fimbrillin MatB NRZ28_00380 PF00196 Bacterial regulatory proteins, luxR family NRZ28_00380 PF00072 Response regulator receiver domain NRZ28_00395 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_00395 PF00072 Response regulator receiver domain NRZ28_00395 PF00989 PAS fold NRZ28_00395 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_00395 PF01627 Hpt domain NRZ28_00405 PF06580 Histidine kinase NRZ28_00405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_00405 PF07694 5TMR of 5TMR-LYT NRZ28_00410 PF00072 Response regulator receiver domain NRZ28_00410 PF04397 LytTr DNA-binding domain NRZ28_00415 PF07690 Major Facilitator Superfamily NRZ28_00420 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NRZ28_00420 PF02222 ATP-grasp domain NRZ28_00425 PF00731 AIR carboxylase NRZ28_00440 PF03466 LysR substrate binding domain NRZ28_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_00445 PF00593 TonB dependent receptor NRZ28_00445 PF07715 TonB-dependent Receptor Plug Domain NRZ28_00450 PF01177 Asp/Glu/Hydantoin racemase NRZ28_00485 PF00899 ThiF family NRZ28_00490 PF02657 Fe-S metabolism associated domain NRZ28_00495 PF00266 Aminotransferase class-V NRZ28_00500 PF00580 UvrD/REP helicase N-terminal domain NRZ28_00500 PF13361 UvrD-like helicase C-terminal domain NRZ28_00505 PF00563 EAL domain NRZ28_00505 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_00505 PF03707 Bacterial signalling protein N terminal repeat NRZ28_00510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRZ28_00515 PF00107 Zinc-binding dehydrogenase NRZ28_00515 PF08240 Alcohol dehydrogenase GroES-like domain NRZ28_00520 PF00155 Aminotransferase class I and II NRZ28_00525 PF08360 QacR-like protein, C-terminal region NRZ28_00525 PF00440 Bacterial regulatory proteins, tetR family NRZ28_00530 PF01370 NAD dependent epimerase/dehydratase family NRZ28_00545 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NRZ28_00565 PF00593 TonB dependent receptor NRZ28_00565 PF07715 TonB-dependent Receptor Plug Domain NRZ28_00570 PF01497 Periplasmic binding protein NRZ28_00575 PF00005 ABC transporter NRZ28_00580 PF01032 FecCD transport family NRZ28_00585 PF01032 FecCD transport family NRZ28_00590 PF00005 ABC transporter NRZ28_00595 PF00664 ABC transporter transmembrane region NRZ28_00595 PF08021 Siderophore-interacting FAD-binding domain NRZ28_00595 PF04954 Siderophore-interacting protein NRZ28_00595 PF00005 ABC transporter NRZ28_00605 PF00501 AMP-binding enzyme NRZ28_00605 PF13193 AMP-binding enzyme C-terminal domain NRZ28_00605 PF00668 Condensation domain NRZ28_00605 PF00550 Phosphopantetheine attachment site NRZ28_00610 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NRZ28_00615 PF00501 AMP-binding enzyme NRZ28_00615 PF00668 Condensation domain NRZ28_00615 PF00550 Phosphopantetheine attachment site NRZ28_00625 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRZ28_00630 PF08340 Domain of unknown function (DUF1732) NRZ28_00630 PF03755 YicC-like family, N-terminal region NRZ28_00635 PF01138 3' exoribonuclease family, domain 1 NRZ28_00635 PF03725 3' exoribonuclease family, domain 2 NRZ28_00640 PF00156 Phosphoribosyl transferase domain NRZ28_00645 PF00403 Heavy-metal-associated domain NRZ28_00650 PF13411 MerR HTH family regulatory protein NRZ28_00655 PF00563 EAL domain NRZ28_00655 PF01590 GAF domain NRZ28_00655 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_00655 PF00360 Phytochrome region NRZ28_00660 PF06288 Protein of unknown function (DUF1040) NRZ28_00665 PF12801 4Fe-4S binding domain NRZ28_00665 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NRZ28_00665 PF13746 4Fe-4S dicluster domain NRZ28_00670 PF01636 Phosphotransferase enzyme family NRZ28_00675 PF01323 DSBA-like thioredoxin domain NRZ28_00680 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NRZ28_00680 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NRZ28_00685 PF00857 Isochorismatase family NRZ28_00695 PF04463 Protein of unknown function (DUF523) NRZ28_00700 PF01553 Acyltransferase NRZ28_00705 PF01553 Acyltransferase NRZ28_00710 PF01078 Magnesium chelatase, subunit ChlI NRZ28_00710 PF13335 Magnesium chelatase, subunit ChlI C-terminal NRZ28_00715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRZ28_00715 PF00205 Thiamine pyrophosphate enzyme, central domain NRZ28_00715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRZ28_00725 PF01063 Amino-transferase class IV NRZ28_00730 PF00920 Dehydratase family NRZ28_00735 PF00291 Pyridoxal-phosphate dependent enzyme NRZ28_00735 PF00585 C-terminal regulatory domain of Threonine dehydratase NRZ28_00740 PF01389 OmpA-like transmembrane domain NRZ28_00740 PF00691 OmpA family NRZ28_00750 PF00271 Helicase conserved C-terminal domain NRZ28_00750 PF17764 3′ DNA-binding domain (3′BD) NRZ28_00750 PF18074 Primosomal protein N C-terminal domain NRZ28_00750 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NRZ28_00750 PF00270 DEAD/DEAH box helicase NRZ28_00755 PF01197 Ribosomal protein L31 NRZ28_00760 PF11066 Protein of unknown function (DUF2867) NRZ28_00760 PF13460 NAD(P)H-binding NRZ28_00765 PF00390 Malic enzyme, N-terminal domain NRZ28_00765 PF03949 Malic enzyme, NAD binding domain NRZ28_00775 PF00672 HAMP domain NRZ28_00775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_00775 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_00780 PF00072 Response regulator receiver domain NRZ28_00780 PF00486 Transcriptional regulatory protein, C terminal NRZ28_00785 PF05958 tRNA (Uracil-5-)-methyltransferase NRZ28_00820 PF09940 Domain of unknown function (DUF2172) NRZ28_00820 PF16221 winged helix-turn-helix NRZ28_00820 PF16254 Domain of unknown function (DUF4910) NRZ28_00840 PF08666 SAF domain NRZ28_00840 PF03102 NeuB family NRZ28_00850 PF02348 Cytidylyltransferase NRZ28_00870 PF00501 AMP-binding enzyme NRZ28_00870 PF13193 AMP-binding enzyme C-terminal domain NRZ28_00885 PF00535 Glycosyl transferase family 2 NRZ28_00890 PF03275 UDP-galactopyranose mutase NRZ28_00925 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRZ28_00930 PF00733 Asparagine synthase NRZ28_00930 PF13537 Glutamine amidotransferase domain NRZ28_00940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRZ28_00945 PF02719 Polysaccharide biosynthesis protein NRZ28_00950 PF02903 Alpha amylase, N-terminal ig-like domain NRZ28_00950 PF00128 Alpha amylase, catalytic domain NRZ28_00965 PF00012 Hsp70 protein NRZ28_00970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRZ28_00970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRZ28_00975 PF05981 CreA protein NRZ28_00990 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRZ28_00995 PF00120 Glutamine synthetase, catalytic domain NRZ28_01000 PF00202 Aminotransferase class-III NRZ28_01005 PF13416 Bacterial extracellular solute-binding protein NRZ28_01010 PF13416 Bacterial extracellular solute-binding protein NRZ28_01015 PF00005 ABC transporter NRZ28_01015 PF08402 TOBE domain NRZ28_01020 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_01025 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_01030 PF03475 3-alpha domain NRZ28_01030 PF03473 MOSC domain NRZ28_01045 PF03061 Thioesterase superfamily NRZ28_01050 PF16124 RecQ zinc-binding NRZ28_01050 PF00270 DEAD/DEAH box helicase NRZ28_01050 PF09382 RQC domain NRZ28_01050 PF00271 Helicase conserved C-terminal domain NRZ28_01050 PF00570 HRDC domain NRZ28_01055 PF00034 Cytochrome c NRZ28_01060 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NRZ28_01070 PF02592 Putative vitamin uptake transporter NRZ28_01075 PF03737 Aldolase/RraA NRZ28_01080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_01080 PF00672 HAMP domain NRZ28_01085 PF01769 Divalent cation transporter NRZ28_01085 PF03448 MgtE intracellular N domain NRZ28_01085 PF00571 CBS domain NRZ28_01090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRZ28_01090 PF14824 Sirohaem biosynthesis protein central NRZ28_01090 PF10414 Sirohaem synthase dimerisation region NRZ28_01095 PF01226 Formate/nitrite transporter NRZ28_01100 PF13806 Rieske-like [2Fe-2S] domain NRZ28_01110 PF18267 Rubredoxin NAD+ reductase C-terminal domain NRZ28_01110 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_01110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRZ28_01110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRZ28_01110 PF04324 BFD-like [2Fe-2S] binding domain NRZ28_01125 PF00005 ABC transporter NRZ28_01130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_01140 PF10431 C-terminal, D2-small domain, of ClpB protein NRZ28_01140 PF07724 AAA domain (Cdc48 subfamily) NRZ28_01140 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_01145 PF00227 Proteasome subunit NRZ28_01155 PF03485 Arginyl tRNA synthetase N terminal domain NRZ28_01155 PF00750 tRNA synthetases class I (R) NRZ28_01155 PF05746 DALR anticodon binding domain NRZ28_01165 PF04542 Sigma-70 region 2 NRZ28_01165 PF04545 Sigma-70, region 4 NRZ28_01170 PF12973 ChrR Cupin-like domain NRZ28_01175 PF02673 Bacitracin resistance protein BacA NRZ28_01180 PF00248 Aldo/keto reductase family NRZ28_01185 PF01263 Aldose 1-epimerase NRZ28_01190 PF00288 GHMP kinases N terminal domain NRZ28_01190 PF10509 Galactokinase galactose-binding signature NRZ28_01190 PF08544 GHMP kinases C terminal NRZ28_01195 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NRZ28_01195 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NRZ28_01200 PF16363 GDP-mannose 4,6 dehydratase NRZ28_01205 PF00356 Bacterial regulatory proteins, lacI family NRZ28_01210 PF02929 Beta galactosidase small chain NRZ28_01210 PF16353 Domain of unknown function(DUF4981) NRZ28_01210 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRZ28_01210 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRZ28_01210 PF00703 Glycosyl hydrolases family 2 NRZ28_01215 PF13407 Periplasmic binding protein domain NRZ28_01220 PF00005 ABC transporter NRZ28_01225 PF02653 Branched-chain amino acid transport system / permease component NRZ28_01230 PF02743 Cache domain NRZ28_01230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_01230 PF00672 HAMP domain NRZ28_01255 PF00696 Amino acid kinase family NRZ28_01260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRZ28_01260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRZ28_01265 PF03606 C4-dicarboxylate anaerobic carrier NRZ28_01270 PF01316 Arginine repressor, DNA binding domain NRZ28_01270 PF02863 Arginine repressor, C-terminal domain NRZ28_01275 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NRZ28_01275 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NRZ28_01280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRZ28_01280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRZ28_01300 PF02666 Phosphatidylserine decarboxylase NRZ28_01305 PF02743 Cache domain NRZ28_01305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_01305 PF00672 HAMP domain NRZ28_01310 PF08212 Lipocalin-like domain NRZ28_01315 PF06719 AraC-type transcriptional regulator N-terminus NRZ28_01315 PF12833 Helix-turn-helix domain NRZ28_01320 PF00465 Iron-containing alcohol dehydrogenase NRZ28_01325 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRZ28_01325 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRZ28_01325 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRZ28_01330 PF02233 NAD(P) transhydrogenase beta subunit NRZ28_01340 PF03313 Serine dehydratase alpha chain NRZ28_01345 PF00375 Sodium:dicarboxylate symporter family NRZ28_01350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRZ28_01350 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_01355 PF13525 Outer membrane lipoprotein NRZ28_01360 PF01479 S4 domain NRZ28_01360 PF00849 RNA pseudouridylate synthase NRZ28_01365 PF02578 Multi-copper polyphenol oxidoreductase laccase NRZ28_01370 PF17871 AAA lid domain NRZ28_01370 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_01370 PF10431 C-terminal, D2-small domain, of ClpB protein NRZ28_01370 PF02861 Clp amino terminal domain, pathogenicity island component NRZ28_01370 PF07724 AAA domain (Cdc48 subfamily) NRZ28_01380 PF03590 Aspartate-ammonia ligase NRZ28_01385 PF01037 Lrp/AsnC ligand binding domain NRZ28_01395 PF10063 Uncharacterized integral membrane protein (DUF2301) NRZ28_01400 PF00571 CBS domain NRZ28_01400 PF00478 IMP dehydrogenase / GMP reductase domain NRZ28_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_01420 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_01430 PF00072 Response regulator receiver domain NRZ28_01430 PF00158 Sigma-54 interaction domain NRZ28_01435 PF06496 Protein of unknown function (DUF1097) NRZ28_01440 PF00174 Oxidoreductase molybdopterin binding domain NRZ28_01445 PF01794 Ferric reductase like transmembrane component NRZ28_01460 PF00486 Transcriptional regulatory protein, C terminal NRZ28_01460 PF00072 Response regulator receiver domain NRZ28_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_01475 PF00384 Molybdopterin oxidoreductase NRZ28_01475 PF01568 Molydopterin dinucleotide binding domain NRZ28_01475 PF18364 Molybdopterin oxidoreductase N-terminal domain NRZ28_01480 PF03264 NapC/NirT cytochrome c family, N-terminal region NRZ28_01485 PF01751 Toprim domain NRZ28_01485 PF01131 DNA topoisomerase NRZ28_01500 PF12833 Helix-turn-helix domain NRZ28_01500 PF12852 Cupin NRZ28_01505 PF02386 Cation transport protein NRZ28_01510 PF02254 TrkA-N domain NRZ28_01510 PF02080 TrkA-C domain NRZ28_01515 PF01565 FAD binding domain NRZ28_01515 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NRZ28_01520 PF02237 Biotin protein ligase C terminal domain NRZ28_01520 PF03099 Biotin/lipoate A/B protein ligase family NRZ28_01520 PF08279 HTH domain NRZ28_01525 PF00485 Phosphoribulokinase / Uridine kinase family NRZ28_01540 PF03143 Elongation factor Tu C-terminal domain NRZ28_01540 PF03144 Elongation factor Tu domain 2 NRZ28_01540 PF00009 Elongation factor Tu GTP binding domain NRZ28_01550 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NRZ28_01555 PF02357 Transcription termination factor nusG NRZ28_01555 PF00467 KOW motif NRZ28_01560 PF00298 Ribosomal protein L11, RNA binding domain NRZ28_01560 PF03946 Ribosomal protein L11, N-terminal domain NRZ28_01565 PF00687 Ribosomal protein L1p/L10e family NRZ28_01570 PF00466 Ribosomal protein L10 NRZ28_01575 PF16320 Ribosomal protein L7/L12 dimerisation domain NRZ28_01575 PF00542 Ribosomal protein L7/L12 C-terminal domain NRZ28_01580 PF04563 RNA polymerase beta subunit NRZ28_01580 PF04561 RNA polymerase Rpb2, domain 2 NRZ28_01580 PF00562 RNA polymerase Rpb2, domain 6 NRZ28_01580 PF10385 RNA polymerase beta subunit external 1 domain NRZ28_01580 PF04565 RNA polymerase Rpb2, domain 3 NRZ28_01580 PF04560 RNA polymerase Rpb2, domain 7 NRZ28_01585 PF00623 RNA polymerase Rpb1, domain 2 NRZ28_01585 PF04983 RNA polymerase Rpb1, domain 3 NRZ28_01585 PF05000 RNA polymerase Rpb1, domain 4 NRZ28_01585 PF04998 RNA polymerase Rpb1, domain 5 NRZ28_01585 PF04997 RNA polymerase Rpb1, domain 1 NRZ28_01590 PF13309 HTH domain NRZ28_01590 PF08348 YheO-like PAS domain NRZ28_01595 PF01042 Endoribonuclease L-PSP NRZ28_01600 PF02635 DsrE/DsrF-like family NRZ28_01605 PF02635 DsrE/DsrF-like family NRZ28_01610 PF04077 DsrH like protein NRZ28_01615 PF00164 Ribosomal protein S12/S23 NRZ28_01620 PF00177 Ribosomal protein S7p/S5e NRZ28_01625 PF14492 Elongation Factor G, domain II NRZ28_01625 PF00679 Elongation factor G C-terminus NRZ28_01625 PF03144 Elongation factor Tu domain 2 NRZ28_01625 PF00009 Elongation factor Tu GTP binding domain NRZ28_01625 PF03764 Elongation factor G, domain IV NRZ28_01630 PF00009 Elongation factor Tu GTP binding domain NRZ28_01630 PF03144 Elongation factor Tu domain 2 NRZ28_01630 PF03143 Elongation factor Tu C-terminal domain NRZ28_01670 PF00860 Permease family NRZ28_01675 PF02733 Dak1 domain NRZ28_01680 PF02734 DAK2 domain NRZ28_01685 PF03610 PTS system fructose IIA component NRZ28_01685 PF00381 PTS HPr component phosphorylation site NRZ28_01685 PF05524 PEP-utilising enzyme, N-terminal NRZ28_01685 PF00391 PEP-utilising enzyme, mobile domain NRZ28_01690 PF00465 Iron-containing alcohol dehydrogenase NRZ28_01695 PF02954 Bacterial regulatory protein, Fis family NRZ28_01695 PF00989 PAS fold NRZ28_01695 PF00158 Sigma-54 interaction domain NRZ28_01700 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRZ28_01710 PF01594 AI-2E family transporter NRZ28_01715 PF00293 NUDIX domain NRZ28_01740 PF00199 Catalase NRZ28_01740 PF06628 Catalase-related immune-responsive NRZ28_01745 PF00583 Acetyltransferase (GNAT) family NRZ28_01765 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_01775 PF08402 TOBE domain NRZ28_01775 PF00005 ABC transporter NRZ28_01785 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_01800 PF07702 UTRA domain NRZ28_01800 PF00392 Bacterial regulatory proteins, gntR family NRZ28_01810 PF03466 LysR substrate binding domain NRZ28_01810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_01820 PF02678 Pirin NRZ28_01820 PF17954 Quercetinase C-terminal cupin domain NRZ28_01825 PF07681 DoxX NRZ28_01830 PF17946 RecC C-terminal domain NRZ28_01835 PF13361 UvrD-like helicase C-terminal domain NRZ28_01835 PF12705 PD-(D/E)XK nuclease superfamily NRZ28_01835 PF00580 UvrD/REP helicase N-terminal domain NRZ28_01840 PF13538 UvrD-like helicase C-terminal domain NRZ28_01850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRZ28_01860 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_01880 PF00072 Response regulator receiver domain NRZ28_01880 PF00486 Transcriptional regulatory protein, C terminal NRZ28_01885 PF00672 HAMP domain NRZ28_01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_01885 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_01890 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_01890 PF08448 PAS fold NRZ28_01895 PF00593 TonB dependent receptor NRZ28_01895 PF07715 TonB-dependent Receptor Plug Domain NRZ28_01900 PF00313 'Cold-shock' DNA-binding domain NRZ28_01910 PF01545 Cation efflux family NRZ28_01910 PF16916 Dimerisation domain of Zinc Transporter NRZ28_01925 PF00436 Single-strand binding protein family NRZ28_01930 PF00196 Bacterial regulatory proteins, luxR family NRZ28_01935 PF00005 ABC transporter NRZ28_01935 PF17755 UvrA DNA-binding domain NRZ28_01935 PF17760 UvrA interaction domain NRZ28_01940 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_01945 PF03922 OmpW family NRZ28_01950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_01950 PF00672 HAMP domain NRZ28_01950 PF12729 Four helix bundle sensory module for signal transduction NRZ28_01965 PF02219 Methylenetetrahydrofolate reductase NRZ28_01975 PF03594 Benzoate membrane transport protein NRZ28_01980 PF01381 Helix-turn-helix NRZ28_01980 PF07883 Cupin domain NRZ28_02010 PF04363 Protein of unknown function (DUF496) NRZ28_02020 PF04751 Protein of unknown function (DUF615) NRZ28_02025 PF01523 Putative modulator of DNA gyrase NRZ28_02030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRZ28_02035 PF01722 BolA-like protein NRZ28_02045 PF05494 MlaC protein NRZ28_02050 PF02470 MlaD protein NRZ28_02055 PF02405 Permease MlaE NRZ28_02060 PF00005 ABC transporter NRZ28_02065 PF00571 CBS domain NRZ28_02065 PF01380 SIS domain NRZ28_02075 PF06835 Lipopolysaccharide-assembly, LptC-related NRZ28_02080 PF03968 OstA-like protein NRZ28_02085 PF00005 ABC transporter NRZ28_02085 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRZ28_02090 PF00309 Sigma-54 factor, Activator interacting domain (AID) NRZ28_02090 PF04963 Sigma-54 factor, core binding domain NRZ28_02090 PF04552 Sigma-54, DNA binding domain NRZ28_02095 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRZ28_02100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRZ28_02105 PF03668 P-loop ATPase protein family NRZ28_02110 PF00381 PTS HPr component phosphorylation site NRZ28_02115 PF00874 PRD domain NRZ28_02115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRZ28_02115 PF08279 HTH domain NRZ28_02115 PF05043 Mga helix-turn-helix domain NRZ28_02120 PF07071 KDGP aldolase NRZ28_02125 PF03841 L-seryl-tRNA selenium transferase NRZ28_02130 PF01979 Amidohydrolase family NRZ28_02160 PF13180 PDZ domain NRZ28_02165 PF00595 PDZ domain NRZ28_02165 PF13180 PDZ domain NRZ28_02175 PF03969 AFG1-like ATPase NRZ28_02180 PF00572 Ribosomal protein L13 NRZ28_02185 PF00380 Ribosomal protein S9/S16 NRZ28_02190 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NRZ28_02190 PF00355 Rieske [2Fe-2S] domain NRZ28_02195 PF00032 Cytochrome b(C-terminal)/b6/petD NRZ28_02195 PF00033 Cytochrome b/b6/petB NRZ28_02200 PF02167 Cytochrome C1 family NRZ28_02205 PF00043 Glutathione S-transferase, C-terminal domain NRZ28_02205 PF02798 Glutathione S-transferase, N-terminal domain NRZ28_02210 PF04386 Stringent starvation protein B NRZ28_02215 PF04972 BON domain NRZ28_02220 PF13580 SIS domain NRZ28_02225 PF02021 Uncharacterised protein family UPF0102 NRZ28_02230 PF04348 LppC putative lipoprotein NRZ28_02235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRZ28_02245 PF02381 MraZ protein, putative antitoxin-like NRZ28_02250 PF01795 MraW methylase family NRZ28_02255 PF04999 Cell division protein FtsL NRZ28_02260 PF03717 Penicillin-binding Protein dimerisation domain NRZ28_02260 PF00905 Penicillin binding protein transpeptidase domain NRZ28_02265 PF02875 Mur ligase family, glutamate ligase domain NRZ28_02265 PF08245 Mur ligase middle domain NRZ28_02265 PF01225 Mur ligase family, catalytic domain NRZ28_02270 PF01225 Mur ligase family, catalytic domain NRZ28_02270 PF02875 Mur ligase family, glutamate ligase domain NRZ28_02270 PF08245 Mur ligase middle domain NRZ28_02275 PF00953 Glycosyl transferase family 4 NRZ28_02275 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NRZ28_02280 PF02875 Mur ligase family, glutamate ligase domain NRZ28_02280 PF08245 Mur ligase middle domain NRZ28_02285 PF01098 Cell cycle protein NRZ28_02290 PF03033 Glycosyltransferase family 28 N-terminal domain NRZ28_02290 PF04101 Glycosyltransferase family 28 C-terminal domain NRZ28_02295 PF02875 Mur ligase family, glutamate ligase domain NRZ28_02295 PF01225 Mur ligase family, catalytic domain NRZ28_02295 PF08245 Mur ligase middle domain NRZ28_02300 PF03799 Cell division protein FtsQ NRZ28_02300 PF08478 POTRA domain, FtsQ-type NRZ28_02305 PF02491 SHS2 domain inserted in FTSA NRZ28_02310 PF12327 FtsZ family, C-terminal domain NRZ28_02310 PF00091 Tubulin/FtsZ family, GTPase domain NRZ28_02315 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NRZ28_02325 PF02810 SEC-C motif NRZ28_02325 PF07517 SecA DEAD-like domain NRZ28_02325 PF01043 SecA preprotein cross-linking domain NRZ28_02325 PF07516 SecA Wing and Scaffold domain NRZ28_02335 PF00293 NUDIX domain NRZ28_02340 PF03884 DNA gyrase inhibitor YacG NRZ28_02345 PF07072 Cell division protein NRZ28_02350 PF01121 Dephospho-CoA kinase NRZ28_02355 PF06750 Bacterial Peptidase A24 N-terminal domain NRZ28_02355 PF01478 Type IV leader peptidase family NRZ28_02360 PF00482 Type II secretion system (T2SS), protein F NRZ28_02365 PF00437 Type II/IV secretion system protein NRZ28_02365 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRZ28_02370 PF07963 Prokaryotic N-terminal methylation motif NRZ28_02375 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NRZ28_02375 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NRZ28_02385 PF01510 N-acetylmuramoyl-L-alanine amidase NRZ28_02390 PF00392 Bacterial regulatory proteins, gntR family NRZ28_02390 PF07729 FCD domain NRZ28_02395 PF00456 Transketolase, thiamine diphosphate binding domain NRZ28_02395 PF17831 Pyruvate dehydrogenase E1 component middle domain NRZ28_02400 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRZ28_02400 PF00364 Biotin-requiring enzyme NRZ28_02400 PF02817 e3 binding domain NRZ28_02405 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_02405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRZ28_02415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_02415 PF12729 Four helix bundle sensory module for signal transduction NRZ28_02415 PF00672 HAMP domain NRZ28_02420 PF12729 Four helix bundle sensory module for signal transduction NRZ28_02420 PF00672 HAMP domain NRZ28_02420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_02425 PF01734 Patatin-like phospholipase NRZ28_02430 PF00330 Aconitase family (aconitate hydratase) NRZ28_02430 PF06434 Aconitate hydratase 2 N-terminus NRZ28_02430 PF11791 Aconitate B N-terminal domain NRZ28_02435 PF03466 LysR substrate binding domain NRZ28_02435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_02440 PF01810 LysE type translocator NRZ28_02445 PF04030 D-arabinono-1,4-lactone oxidase NRZ28_02445 PF01565 FAD binding domain NRZ28_02450 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRZ28_02450 PF07683 Cobalamin synthesis protein cobW C-terminal domain NRZ28_02455 PF07690 Major Facilitator Superfamily NRZ28_02465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRZ28_02470 PF02152 Dihydroneopterin aldolase NRZ28_02475 PF02660 Glycerol-3-phosphate acyltransferase NRZ28_02510 PF07670 Nucleoside recognition NRZ28_02515 PF00072 Response regulator receiver domain NRZ28_02515 PF01584 CheW-like domain NRZ28_02525 PF08351 Domain of unknown function (DUF1726) NRZ28_02525 PF13718 GNAT acetyltransferase 2 NRZ28_02525 PF05127 Helicase NRZ28_02525 PF17176 tRNA-binding domain NRZ28_02540 PF00210 Ferritin-like domain NRZ28_02550 PF02142 MGS-like domain NRZ28_02565 PF00710 Asparaginase, N-terminal NRZ28_02565 PF17763 Glutaminase/Asparaginase C-terminal domain NRZ28_02580 PF00356 Bacterial regulatory proteins, lacI family NRZ28_02585 PF00367 phosphotransferase system, EIIB NRZ28_02585 PF02378 Phosphotransferase system, EIIC NRZ28_02590 PF00128 Alpha amylase, catalytic domain NRZ28_02590 PF11941 Domain of unknown function (DUF3459) NRZ28_02595 PF14602 Hexapeptide repeat of succinyl-transferase NRZ28_02595 PF12464 Maltose acetyltransferase NRZ28_02605 PF00171 Aldehyde dehydrogenase family NRZ28_02610 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_02615 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_02620 PF00005 ABC transporter NRZ28_02620 PF08402 TOBE domain NRZ28_02625 PF13416 Bacterial extracellular solute-binding protein NRZ28_02630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_02630 PF03466 LysR substrate binding domain NRZ28_02635 PF03553 Na+/H+ antiporter family NRZ28_02655 PF08323 Starch synthase catalytic domain NRZ28_02655 PF00534 Glycosyl transferases group 1 NRZ28_02660 PF00483 Nucleotidyl transferase NRZ28_02665 PF08468 Methyltransferase small domain N-terminal NRZ28_02665 PF05175 Methyltransferase small domain NRZ28_02670 PF00701 Dihydrodipicolinate synthetase family NRZ28_02675 PF00360 Phytochrome region NRZ28_02675 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_02675 PF01590 GAF domain NRZ28_02675 PF00563 EAL domain NRZ28_02685 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_02690 PF17209 Hfq protein NRZ28_02695 PF04403 Paraquat-inducible protein A NRZ28_02700 PF02470 MlaD protein NRZ28_02705 PF03886 ABC-type transport auxiliary lipoprotein component NRZ28_02710 PF01389 OmpA-like transmembrane domain NRZ28_02710 PF00691 OmpA family NRZ28_02720 PF00657 GDSL-like Lipase/Acylhydrolase NRZ28_02725 PF04076 Bacterial OB fold (BOF) protein NRZ28_02730 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NRZ28_02730 PF01464 Transglycosylase SLT domain NRZ28_02735 PF04362 Bacterial Fe(2+) trafficking NRZ28_02740 PF10576 Iron-sulfur binding domain of endonuclease III NRZ28_02740 PF00633 Helix-hairpin-helix motif NRZ28_02740 PF00730 HhH-GPD superfamily base excision DNA repair protein NRZ28_02740 PF14815 NUDIX domain NRZ28_02745 PF16537 Type II secretion system protein B NRZ28_02750 PF13401 AAA domain NRZ28_02750 PF01471 Putative peptidoglycan binding domain NRZ28_02755 PF12627 Probable RNA and SrmB- binding site of polymerase A NRZ28_02755 PF01743 Poly A polymerase head domain NRZ28_02755 PF01966 HD domain NRZ28_02770 PF04172 LrgB-like family NRZ28_02775 PF03788 LrgA family NRZ28_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_02780 PF03466 LysR substrate binding domain NRZ28_02790 PF00155 Aminotransferase class I and II NRZ28_02790 PF00392 Bacterial regulatory proteins, gntR family NRZ28_02810 PF07350 Protein of unknown function (DUF1479) NRZ28_02815 PF04073 Aminoacyl-tRNA editing domain NRZ28_02820 PF01384 Phosphate transporter family NRZ28_02825 PF01865 Protein of unknown function DUF47 NRZ28_02840 PF03279 Bacterial lipid A biosynthesis acyltransferase NRZ28_02845 PF01467 Cytidylyltransferase-like NRZ28_02845 PF00294 pfkB family carbohydrate kinase NRZ28_02850 PF02321 Outer membrane efflux protein NRZ28_02855 PF00293 NUDIX domain NRZ28_02860 PF06853 Protein of unknown function (DUF1249) NRZ28_02865 PF00149 Calcineurin-like phosphoesterase NRZ28_02870 PF05728 Uncharacterised protein family (UPF0227) NRZ28_02875 PF00293 NUDIX domain NRZ28_02885 PF07869 Protein of unknown function (DUF1656) NRZ28_02890 PF00529 HlyD membrane-fusion protein of T1SS NRZ28_02890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_02895 PF04632 Fusaric acid resistance protein family NRZ28_02900 PF00204 DNA gyrase B NRZ28_02900 PF00986 DNA gyrase B subunit, carboxyl terminus NRZ28_02900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_02900 PF01751 Toprim domain NRZ28_02905 PF03989 DNA gyrase C-terminal domain, beta-propeller NRZ28_02905 PF00521 DNA gyrase/topoisomerase IV, subunit A NRZ28_02915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_02915 PF03466 LysR substrate binding domain NRZ28_02920 PF07690 Major Facilitator Superfamily NRZ28_02950 PF01556 DnaJ C terminal domain NRZ28_02950 PF00684 DnaJ central domain NRZ28_02950 PF00226 DnaJ domain NRZ28_02955 PF00578 AhpC/TSA family NRZ28_02975 PF01553 Acyltransferase NRZ28_02980 PF04012 PspA/IM30 family NRZ28_02995 PF01541 GIY-YIG catalytic domain NRZ28_03005 PF00892 EamA-like transporter family NRZ28_03010 PF03167 Uracil DNA glycosylase superfamily NRZ28_03015 PF00892 EamA-like transporter family NRZ28_03020 PF03466 LysR substrate binding domain NRZ28_03020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_03025 PF00950 ABC 3 transport family NRZ28_03030 PF00005 ABC transporter NRZ28_03035 PF01297 Zinc-uptake complex component A periplasmic NRZ28_03055 PF01551 Peptidase family M23 NRZ28_03055 PF08525 Opacity-associated protein A N-terminal motif NRZ28_03055 PF01476 LysM domain NRZ28_03060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRZ28_03065 PF04222 Protein of unknown function (DUF416) NRZ28_03080 PF02028 BCCT, betaine/carnitine/choline family transporter NRZ28_03085 PF01624 MutS domain I NRZ28_03085 PF05188 MutS domain II NRZ28_03085 PF05192 MutS domain III NRZ28_03085 PF05190 MutS family domain IV NRZ28_03085 PF00488 MutS domain V NRZ28_03090 PF02464 Competence-damaged protein NRZ28_03095 PF00154 recA bacterial DNA recombination protein NRZ28_03100 PF02631 RecX family NRZ28_03105 PF02272 DHHA1 domain NRZ28_03105 PF01411 tRNA synthetases class II (A) NRZ28_03105 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRZ28_03110 PF00696 Amino acid kinase family NRZ28_03110 PF01842 ACT domain NRZ28_03110 PF13840 ACT domain NRZ28_03115 PF02599 Global regulator protein family NRZ28_03150 PF00768 D-alanyl-D-alanine carboxypeptidase NRZ28_03155 PF09335 SNARE associated Golgi protein NRZ28_03160 PF03471 Transporter associated domain NRZ28_03160 PF01595 Cyclin M transmembrane N-terminal domain NRZ28_03160 PF00571 CBS domain NRZ28_03165 PF10458 Valyl tRNA synthetase tRNA binding arm NRZ28_03165 PF08264 Anticodon-binding domain of tRNA NRZ28_03165 PF00133 tRNA synthetases class I (I, L, M and V) NRZ28_03170 PF04364 DNA polymerase III chi subunit, HolC NRZ28_03175 PF00883 Cytosol aminopeptidase family, catalytic domain NRZ28_03175 PF02789 Cytosol aminopeptidase family, N-terminal domain NRZ28_03180 PF03739 Lipopolysaccharide export system permease LptF/LptG NRZ28_03185 PF03739 Lipopolysaccharide export system permease LptF/LptG NRZ28_03200 PF00909 Ammonium Transporter Family NRZ28_03205 PF01938 TRAM domain NRZ28_03205 PF05958 tRNA (Uracil-5-)-methyltransferase NRZ28_03215 PF07963 Prokaryotic N-terminal methylation motif NRZ28_03220 PF01026 TatD related DNase NRZ28_03225 PF07670 Nucleoside recognition NRZ28_03225 PF07662 Na+ dependent nucleoside transporter C-terminus NRZ28_03225 PF01773 Na+ dependent nucleoside transporter N-terminus NRZ28_03235 PF01791 DeoC/LacD family aldolase NRZ28_03240 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NRZ28_03240 PF00591 Glycosyl transferase family, a/b domain NRZ28_03240 PF02885 Glycosyl transferase family, helical bundle domain NRZ28_03245 PF01676 Metalloenzyme superfamily NRZ28_03250 PF01048 Phosphorylase superfamily NRZ28_03255 PF13426 PAS domain NRZ28_03255 PF08447 PAS fold NRZ28_03255 PF00563 EAL domain NRZ28_03255 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_03255 PF05231 MASE1 NRZ28_03255 PF08448 PAS fold NRZ28_03265 PF18429 Domain of unknown function (DUF5609) NRZ28_03280 PF18073 Rubredoxin metal binding domain NRZ28_03285 PF07238 PilZ domain NRZ28_03290 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NRZ28_03300 PF00216 Bacterial DNA-binding protein NRZ28_03315 PF01207 Dihydrouridine synthase (Dus) NRZ28_03320 PF01475 Ferric uptake regulator family NRZ28_03335 PF05525 Branched-chain amino acid transport protein NRZ28_03340 PF05525 Branched-chain amino acid transport protein NRZ28_03345 PF05175 Methyltransferase small domain NRZ28_03350 PF00270 DEAD/DEAH box helicase NRZ28_03350 PF00271 Helicase conserved C-terminal domain NRZ28_03355 PF03883 Peroxide stress protein YaaA NRZ28_03360 PF00437 Type II/IV secretion system protein NRZ28_03365 PF00437 Type II/IV secretion system protein NRZ28_03370 PF01168 Alanine racemase, N-terminal domain NRZ28_03375 PF14748 Pyrroline-5-carboxylate reductase dimerisation NRZ28_03375 PF03807 NADP oxidoreductase coenzyme F420-dependent NRZ28_03380 PF02325 YGGT family NRZ28_03385 PF02594 Uncharacterised ACR, YggU family COG1872 NRZ28_03400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_03410 PF00132 Bacterial transferase hexapeptide (six repeats) NRZ28_03415 PF10952 Protein of unknown function (DUF2753) NRZ28_03420 PF00378 Enoyl-CoA hydratase/isomerase NRZ28_03435 PF00106 short chain dehydrogenase NRZ28_03440 PF04073 Aminoacyl-tRNA editing domain NRZ28_03440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRZ28_03440 PF03129 Anticodon binding domain NRZ28_03445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_03445 PF00672 HAMP domain NRZ28_03450 PF07499 RuvA, C-terminal domain NRZ28_03450 PF01330 RuvA N terminal domain NRZ28_03455 PF05491 RuvB C-terminal winged helix domain NRZ28_03455 PF05496 Holliday junction DNA helicase RuvB P-loop domain NRZ28_03455 PF17864 RuvB AAA lid domain NRZ28_03460 PF01654 Cytochrome bd terminal oxidase subunit I NRZ28_03465 PF02322 Cytochrome bd terminal oxidase subunit II NRZ28_03470 PF08173 Membrane bound YbgT-like protein NRZ28_03475 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) NRZ28_03480 PF03061 Thioesterase superfamily NRZ28_03485 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_03490 PF02472 Biopolymer transport protein ExbD/TolR NRZ28_03500 PF07676 WD40-like Beta Propeller Repeat NRZ28_03500 PF04052 TolB amino-terminal domain NRZ28_03505 PF00691 OmpA family NRZ28_03510 PF13174 Tetratricopeptide repeat NRZ28_03510 PF16331 TolA binding protein trimerisation NRZ28_03545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_03545 PF00672 HAMP domain NRZ28_03550 PF02445 Quinolinate synthetase A protein NRZ28_03555 PF01263 Aldose 1-epimerase NRZ28_03560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRZ28_03560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRZ28_03565 PF02446 4-alpha-glucanotransferase NRZ28_03570 PF00128 Alpha amylase, catalytic domain NRZ28_03570 PF02806 Alpha amylase, C-terminal all-beta domain NRZ28_03570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRZ28_03575 PF00128 Alpha amylase, catalytic domain NRZ28_03575 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRZ28_03580 PF01641 SelR domain NRZ28_03590 PF00293 NUDIX domain NRZ28_03595 PF16884 N-terminal domain of oxidoreductase NRZ28_03595 PF00107 Zinc-binding dehydrogenase NRZ28_03600 PF02566 OsmC-like protein NRZ28_03605 PF01047 MarR family NRZ28_03620 PF01037 Lrp/AsnC ligand binding domain NRZ28_03635 PF07690 Major Facilitator Superfamily NRZ28_03655 PF00209 Sodium:neurotransmitter symporter family NRZ28_03665 PF00209 Sodium:neurotransmitter symporter family NRZ28_03690 PF00155 Aminotransferase class I and II NRZ28_03690 PF00392 Bacterial regulatory proteins, gntR family NRZ28_03700 PF01810 LysE type translocator NRZ28_03705 PF01177 Asp/Glu/Hydantoin racemase NRZ28_03710 PF07731 Multicopper oxidase NRZ28_03710 PF00394 Multicopper oxidase NRZ28_03710 PF07731 Multicopper oxidase NRZ28_03710 PF07732 Multicopper oxidase NRZ28_03710 PF00394 Multicopper oxidase NRZ28_03710 PF07732 Multicopper oxidase NRZ28_03720 PF04074 YhcH/YjgK/YiaL NRZ28_03725 PF00871 Acetokinase family NRZ28_03730 PF00924 Mechanosensitive ion channel NRZ28_03735 PF03734 L,D-transpeptidase catalytic domain NRZ28_03735 PF17969 L,D-transpeptidase C-terminal domain NRZ28_03740 PF00474 Sodium:solute symporter family NRZ28_03750 PF06877 Regulator of ribonuclease activity B NRZ28_03765 PF02525 Flavodoxin-like fold NRZ28_03770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_03770 PF03466 LysR substrate binding domain NRZ28_03775 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NRZ28_03785 PF00005 ABC transporter NRZ28_03785 PF12848 ABC transporter NRZ28_03790 PF00571 CBS domain NRZ28_03790 PF01380 SIS domain NRZ28_03795 PF01957 NfeD-like C-terminal, partner-binding NRZ28_03800 PF01145 SPFH domain / Band 7 family NRZ28_03800 PF16200 C-terminal region of band_7 NRZ28_03805 PF10414 Sirohaem synthase dimerisation region NRZ28_03805 PF14824 Sirohaem biosynthesis protein central NRZ28_03805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRZ28_03810 PF01507 Phosphoadenosine phosphosulfate reductase family NRZ28_03815 PF00009 Elongation factor Tu GTP binding domain NRZ28_03820 PF03600 Citrate transporter NRZ28_03820 PF02080 TrkA-C domain NRZ28_03845 PF00043 Glutathione S-transferase, C-terminal domain NRZ28_03845 PF02798 Glutathione S-transferase, N-terminal domain NRZ28_03865 PF00005 ABC transporter NRZ28_03880 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NRZ28_03895 PF00719 Inorganic pyrophosphatase NRZ28_03900 PF08245 Mur ligase middle domain NRZ28_03900 PF02875 Mur ligase family, glutamate ligase domain NRZ28_03900 PF01225 Mur ligase family, catalytic domain NRZ28_03905 PF02441 Flavoprotein NRZ28_03910 PF00440 Bacterial regulatory proteins, tetR family NRZ28_03915 PF00156 Phosphoribosyl transferase domain NRZ28_03920 PF00005 ABC transporter NRZ28_03925 PF01061 ABC-2 type transporter NRZ28_03930 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NRZ28_03935 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRZ28_03955 PF00375 Sodium:dicarboxylate symporter family NRZ28_03960 PF02569 Pantoate-beta-alanine ligase NRZ28_03965 PF02548 Ketopantoate hydroxymethyltransferase NRZ28_03970 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRZ28_03975 PF01743 Poly A polymerase head domain NRZ28_03975 PF12626 Polymerase A arginine-rich C-terminus NRZ28_03975 PF12627 Probable RNA and SrmB- binding site of polymerase A NRZ28_03980 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRZ28_03985 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRZ28_03990 PF03749 Sugar fermentation stimulation protein RE domain NRZ28_03990 PF17746 SfsA N-terminal OB domain NRZ28_04000 PF00270 DEAD/DEAH box helicase NRZ28_04000 PF04408 Helicase associated domain (HA2) NRZ28_04000 PF00271 Helicase conserved C-terminal domain NRZ28_04000 PF08482 ATP-dependent helicase C-terminal NRZ28_04005 PF00912 Transglycosylase NRZ28_04005 PF00905 Penicillin binding protein transpeptidase domain NRZ28_04005 PF14814 Bifunctional transglycosylase second domain NRZ28_04010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRZ28_04015 PF00893 Small Multidrug Resistance protein NRZ28_04020 PF00893 Small Multidrug Resistance protein NRZ28_04030 PF11849 Domain of unknown function (DUF3369) NRZ28_04040 PF01569 PAP2 superfamily NRZ28_04055 PF00202 Aminotransferase class-III NRZ28_04060 PF00654 Voltage gated chloride channel NRZ28_04070 PF01521 Iron-sulphur cluster biosynthesis NRZ28_04095 PF01810 LysE type translocator NRZ28_04100 PF02954 Bacterial regulatory protein, Fis family NRZ28_04105 PF01207 Dihydrouridine synthase (Dus) NRZ28_04110 PF02321 Outer membrane efflux protein NRZ28_04115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_04145 PF00072 Response regulator receiver domain NRZ28_04150 PF00854 POT family NRZ28_04155 PF00483 Nucleotidyl transferase NRZ28_04165 PF00459 Inositol monophosphatase family NRZ28_04170 PF03795 YCII-related domain NRZ28_04175 PF04279 Intracellular septation protein A NRZ28_04180 PF00282 Pyridoxal-dependent decarboxylase conserved domain NRZ28_04185 PF03006 Haemolysin-III related NRZ28_04190 PF06826 Predicted Permease Membrane Region NRZ28_04190 PF02080 TrkA-C domain NRZ28_04250 PF01584 CheW-like domain NRZ28_04250 PF00072 Response regulator receiver domain NRZ28_04255 PF13472 GDSL-like Lipase/Acylhydrolase family NRZ28_04260 PF00005 ABC transporter NRZ28_04270 PF08338 Domain of unknown function (DUF1731) NRZ28_04270 PF01370 NAD dependent epimerase/dehydratase family NRZ28_04275 PF12792 CSS motif domain associated with EAL NRZ28_04275 PF00563 EAL domain NRZ28_04280 PF00155 Aminotransferase class I and II NRZ28_04285 PF01483 Proprotein convertase P-domain NRZ28_04285 PF04389 Peptidase family M28 NRZ28_04290 PF02390 Putative methyltransferase NRZ28_04295 PF04320 Protein with unknown function (DUF469) NRZ28_04300 PF04960 Glutaminase NRZ28_04305 PF00581 Rhodanese-like domain NRZ28_04310 PF06004 Bacterial protein of unknown function (DUF903) NRZ28_04315 PF00664 ABC transporter transmembrane region NRZ28_04315 PF00005 ABC transporter NRZ28_04320 PF00561 alpha/beta hydrolase fold NRZ28_04340 PF05547 Immune inhibitor A peptidase M6 NRZ28_04340 PF00801 PKD domain NRZ28_04345 PF06877 Regulator of ribonuclease activity B NRZ28_04350 PF00563 EAL domain NRZ28_04350 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_04350 PF03707 Bacterial signalling protein N terminal repeat NRZ28_04370 PF09905 DNA-binding protein VF530 NRZ28_04375 PF02666 Phosphatidylserine decarboxylase NRZ28_04380 PF03193 RsgA GTPase NRZ28_04385 PF00929 Exonuclease NRZ28_04440 PF00313 'Cold-shock' DNA-binding domain NRZ28_04450 PF00672 HAMP domain NRZ28_04450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_04455 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRZ28_04490 PF00704 Glycosyl hydrolases family 18 NRZ28_04490 PF06483 Chitinase C NRZ28_04505 PF02472 Biopolymer transport protein ExbD/TolR NRZ28_04510 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_04515 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_04525 PF07715 TonB-dependent Receptor Plug Domain NRZ28_04525 PF00593 TonB dependent receptor NRZ28_04530 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_04535 PF12911 N-terminal TM domain of oligopeptide transport permease C NRZ28_04535 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_04545 PF00005 ABC transporter NRZ28_04545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_04550 PF00005 ABC transporter NRZ28_04550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_04555 PF07687 Peptidase dimerisation domain NRZ28_04555 PF01546 Peptidase family M20/M25/M40 NRZ28_04560 PF00156 Phosphoribosyl transferase domain NRZ28_04565 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NRZ28_04570 PF07417 Sigma factor-binding transcriptional regulator Crl NRZ28_04575 PF00696 Amino acid kinase family NRZ28_04575 PF01472 PUA domain NRZ28_04580 PF00171 Aldehyde dehydrogenase family NRZ28_04590 PF00582 Universal stress protein family NRZ28_04615 PF00294 pfkB family carbohydrate kinase NRZ28_04620 PF04227 Indigoidine synthase A like protein NRZ28_04625 PF00194 Eukaryotic-type carbonic anhydrase NRZ28_04630 PF00034 Cytochrome c NRZ28_04630 PF03150 Di-haem cytochrome c peroxidase NRZ28_04665 PF00550 Phosphopantetheine attachment site NRZ28_04670 PF00550 Phosphopantetheine attachment site NRZ28_04680 PF00501 AMP-binding enzyme NRZ28_04680 PF13193 AMP-binding enzyme C-terminal domain NRZ28_04685 PF07977 FabA-like domain NRZ28_04695 PF00221 Aromatic amino acid lyase NRZ28_04720 PF02801 Beta-ketoacyl synthase, C-terminal domain NRZ28_04720 PF00109 Beta-ketoacyl synthase, N-terminal domain NRZ28_04735 PF00109 Beta-ketoacyl synthase, N-terminal domain NRZ28_04735 PF02801 Beta-ketoacyl synthase, C-terminal domain NRZ28_04745 PF00994 Probable molybdopterin binding domain NRZ28_04755 PF06738 Putative threonine/serine exporter NRZ28_04760 PF12821 Threonine/Serine exporter, ThrE NRZ28_04765 PF00186 Dihydrofolate reductase NRZ28_04770 PF00571 CBS domain NRZ28_04770 PF00005 ABC transporter NRZ28_04775 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_04780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRZ28_04785 PF01507 Phosphoadenosine phosphosulfate reductase family NRZ28_04790 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRZ28_04790 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRZ28_04795 PF00175 Oxidoreductase NAD-binding domain NRZ28_04795 PF00667 FAD binding domain NRZ28_04795 PF00258 Flavodoxin NRZ28_04800 PF02567 Phenazine biosynthesis-like protein NRZ28_04805 PF00152 tRNA synthetases class II (D, K and N) NRZ28_04805 PF01336 OB-fold nucleic acid binding domain NRZ28_04815 PF02743 Cache domain NRZ28_04815 PF00672 HAMP domain NRZ28_04815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_04820 PF03616 Sodium/glutamate symporter NRZ28_04825 PF00710 Asparaginase, N-terminal NRZ28_04825 PF17763 Glutaminase/Asparaginase C-terminal domain NRZ28_04830 PF07023 Protein of unknown function (DUF1315) NRZ28_04835 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRZ28_04835 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRZ28_04850 PF01343 Peptidase family S49 NRZ28_04855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRZ28_04855 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_04860 PF00881 Nitroreductase family NRZ28_04865 PF02743 Cache domain NRZ28_04865 PF00672 HAMP domain NRZ28_04865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_04870 PF14602 Hexapeptide repeat of succinyl-transferase NRZ28_04870 PF12464 Maltose acetyltransferase NRZ28_04885 PF08240 Alcohol dehydrogenase GroES-like domain NRZ28_04885 PF00107 Zinc-binding dehydrogenase NRZ28_04890 PF03466 LysR substrate binding domain NRZ28_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_04895 PF02378 Phosphotransferase system, EIIC NRZ28_04895 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRZ28_04895 PF00367 phosphotransferase system, EIIB NRZ28_04900 PF00474 Sodium:solute symporter family NRZ28_04910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRZ28_04910 PF00289 Biotin carboxylase, N-terminal domain NRZ28_04910 PF02785 Biotin carboxylase C-terminal domain NRZ28_04915 PF00364 Biotin-requiring enzyme NRZ28_04920 PF01220 Dehydroquinase class II NRZ28_04925 PF16177 Acetyl-coenzyme A synthetase N-terminus NRZ28_04925 PF00501 AMP-binding enzyme NRZ28_04925 PF13193 AMP-binding enzyme C-terminal domain NRZ28_04935 PF00563 EAL domain NRZ28_04935 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_04935 PF03707 Bacterial signalling protein N terminal repeat NRZ28_04935 PF13188 PAS domain NRZ28_04955 PF02613 Nitrate reductase delta subunit NRZ28_04970 PF00464 Serine hydroxymethyltransferase NRZ28_04985 PF03477 ATP cone domain NRZ28_04990 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRZ28_04990 PF01872 RibD C-terminal domain NRZ28_04995 PF00677 Lumazine binding domain NRZ28_05000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRZ28_05000 PF00925 GTP cyclohydrolase II NRZ28_05010 PF00885 6,7-dimethyl-8-ribityllumazine synthase NRZ28_05015 PF01029 NusB family NRZ28_05020 PF00586 AIR synthase related protein, N-terminal domain NRZ28_05020 PF02769 AIR synthase related protein, C-terminal domain NRZ28_05025 PF04608 Phosphatidylglycerophosphatase A NRZ28_05030 PF00005 ABC transporter NRZ28_05030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_05035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_05040 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_05045 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_05045 PF12911 N-terminal TM domain of oligopeptide transport permease C NRZ28_05050 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NRZ28_05050 PF02779 Transketolase, pyrimidine binding domain NRZ28_05050 PF02780 Transketolase, C-terminal domain NRZ28_05055 PF00348 Polyprenyl synthetase NRZ28_05060 PF02609 Exonuclease VII small subunit NRZ28_05065 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_05070 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRZ28_05070 PF00691 OmpA family NRZ28_05075 PF01272 Transcription elongation factor, GreA/GreB, C-term NRZ28_05075 PF03449 Transcription elongation factor, N-terminal NRZ28_05085 PF01985 CRS1 / YhbY (CRM) domain NRZ28_05090 PF01728 FtsJ-like methyltransferase NRZ28_05095 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_05095 PF17862 AAA+ lid domain NRZ28_05095 PF06480 FtsH Extracellular NRZ28_05095 PF01434 Peptidase family M41 NRZ28_05100 PF00809 Pterin binding enzyme NRZ28_05105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRZ28_05105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRZ28_05105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRZ28_05105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRZ28_05110 PF00121 Triosephosphate isomerase NRZ28_05115 PF03840 Preprotein translocase SecG subunit NRZ28_05130 PF02576 RimP N-terminal domain NRZ28_05130 PF17384 RimP C-terminal SH3 domain NRZ28_05135 PF00575 S1 RNA binding domain NRZ28_05135 PF13184 NusA-like KH domain NRZ28_05135 PF08529 NusA N-terminal domain NRZ28_05140 PF04760 Translation initiation factor IF-2, N-terminal region NRZ28_05140 PF08364 Bacterial translation initiation factor IF-2 associated region NRZ28_05140 PF11987 Translation-initiation factor 2 NRZ28_05140 PF00009 Elongation factor Tu GTP binding domain NRZ28_05145 PF02033 Ribosome-binding factor A NRZ28_05150 PF09157 Pseudouridine synthase II TruB, C-terminal NRZ28_05150 PF16198 tRNA pseudouridylate synthase B C-terminal domain NRZ28_05150 PF01509 TruB family pseudouridylate synthase (N terminal domain) NRZ28_05155 PF00312 Ribosomal protein S15 NRZ28_05160 PF00575 S1 RNA binding domain NRZ28_05160 PF01138 3' exoribonuclease family, domain 1 NRZ28_05160 PF03725 3' exoribonuclease family, domain 2 NRZ28_05160 PF00013 KH domain NRZ28_05160 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NRZ28_05165 PF07690 Major Facilitator Superfamily NRZ28_05170 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_05175 PF02635 DsrE/DsrF-like family NRZ28_05185 PF10415 Fumarase C C-terminus NRZ28_05185 PF00206 Lyase NRZ28_05190 PF03575 Peptidase family S51 NRZ28_05195 PF02554 Carbon starvation protein CstA NRZ28_05195 PF13722 5TM C-terminal transporter carbon starvation CstA NRZ28_05200 PF04397 LytTr DNA-binding domain NRZ28_05200 PF00072 Response regulator receiver domain NRZ28_05205 PF07694 5TMR of 5TMR-LYT NRZ28_05205 PF06580 Histidine kinase NRZ28_05210 PF00196 Bacterial regulatory proteins, luxR family NRZ28_05210 PF00072 Response regulator receiver domain NRZ28_05230 PF13247 4Fe-4S dicluster domain NRZ28_05235 PF03916 Polysulphide reductase, NrfD NRZ28_05240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRZ28_05240 PF00384 Molybdopterin oxidoreductase NRZ28_05240 PF01568 Molydopterin dinucleotide binding domain NRZ28_05260 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRZ28_05265 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NRZ28_05270 PF03734 L,D-transpeptidase catalytic domain NRZ28_05270 PF17969 L,D-transpeptidase C-terminal domain NRZ28_05280 PF01523 Putative modulator of DNA gyrase NRZ28_05285 PF01523 Putative modulator of DNA gyrase NRZ28_05290 PF00258 Flavodoxin NRZ28_05295 PF02899 Phage integrase, N-terminal SAM-like domain NRZ28_05295 PF00589 Phage integrase family NRZ28_05300 PF01741 Large-conductance mechanosensitive channel, MscL NRZ28_05305 PF10411 Disulfide bond isomerase protein N-terminus NRZ28_05305 PF13098 Thioredoxin-like domain NRZ28_05310 PF01368 DHH family NRZ28_05310 PF02272 DHHA1 domain NRZ28_05310 PF17768 RecJ OB domain NRZ28_05315 PF13411 MerR HTH family regulatory protein NRZ28_05320 PF00583 Acetyltransferase (GNAT) family NRZ28_05330 PF02508 Rnf-Nqr subunit, membrane protein NRZ28_05335 PF06821 Serine hydrolase NRZ28_05350 PF00665 Integrase core domain NRZ28_05365 PF00145 C-5 cytosine-specific DNA methylase NRZ28_05380 PF03852 DNA mismatch endonuclease Vsr NRZ28_05390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_05390 PF13426 PAS domain NRZ28_05390 PF13188 PAS domain NRZ28_05405 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NRZ28_05405 PF04055 Radical SAM superfamily NRZ28_05410 PF03099 Biotin/lipoate A/B protein ligase family NRZ28_05415 PF04359 Protein of unknown function (DUF493) NRZ28_05420 PF00768 D-alanyl-D-alanine carboxypeptidase NRZ28_05420 PF07943 Penicillin-binding protein 5, C-terminal domain NRZ28_05425 PF05036 Sporulation related domain NRZ28_05425 PF03330 Lytic transglycolase NRZ28_05430 PF13406 Transglycosylase SLT domain NRZ28_05435 PF01098 Cell cycle protein NRZ28_05440 PF03717 Penicillin-binding Protein dimerisation domain NRZ28_05440 PF00905 Penicillin binding protein transpeptidase domain NRZ28_05445 PF02590 Predicted SPOUT methyltransferase NRZ28_05455 PF01467 Cytidylyltransferase-like NRZ28_05470 PF13603 Leucyl-tRNA synthetase, Domain 2 NRZ28_05470 PF00133 tRNA synthetases class I (I, L, M and V) NRZ28_05470 PF08264 Anticodon-binding domain of tRNA NRZ28_05475 PF07295 Zinc-ribbon containing domain NRZ28_05480 PF00795 Carbon-nitrogen hydrolase NRZ28_05485 PF00571 CBS domain NRZ28_05485 PF03471 Transporter associated domain NRZ28_05490 PF02130 Uncharacterized protein family UPF0054 NRZ28_05495 PF02562 PhoH-like protein NRZ28_05500 PF00919 Uncharacterized protein family UPF0004 NRZ28_05500 PF01938 TRAM domain NRZ28_05500 PF04055 Radical SAM superfamily NRZ28_05505 PF01494 FAD binding domain NRZ28_05510 PF00857 Isochorismatase family NRZ28_05520 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_05520 PF05230 MASE2 domain NRZ28_05525 PF03466 LysR substrate binding domain NRZ28_05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_05535 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_05545 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_05555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRZ28_05555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRZ28_05565 PF09997 Predicted membrane protein (DUF2238) NRZ28_05570 PF01132 Elongation factor P (EF-P) OB domain NRZ28_05570 PF09285 Elongation factor P, C-terminal NRZ28_05570 PF08207 Elongation factor P (EF-P) KOW-like domain NRZ28_05580 PF00478 IMP dehydrogenase / GMP reductase domain NRZ28_05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_05590 PF08521 Two-component sensor kinase N-terminal NRZ28_05590 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_05595 PF00486 Transcriptional regulatory protein, C terminal NRZ28_05595 PF00072 Response regulator receiver domain NRZ28_05615 PF00501 AMP-binding enzyme NRZ28_05630 PF06224 Winged helix DNA-binding domain NRZ28_05650 PF02313 Fumarate reductase subunit D NRZ28_05655 PF02300 Fumarate reductase subunit C NRZ28_05660 PF13183 4Fe-4S dicluster domain NRZ28_05660 PF13085 2Fe-2S iron-sulfur cluster binding domain NRZ28_05665 PF02910 Fumarate reductase flavoprotein C-term NRZ28_05665 PF00890 FAD binding domain NRZ28_05670 PF00672 HAMP domain NRZ28_05670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_05670 PF02743 Cache domain NRZ28_05675 PF03009 Glycerophosphoryl diester phosphodiesterase family NRZ28_05680 PF12795 Mechanosensitive ion channel porin domain NRZ28_05680 PF00924 Mechanosensitive ion channel NRZ28_05680 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRZ28_05690 PF01551 Peptidase family M23 NRZ28_05690 PF08525 Opacity-associated protein A N-terminal motif NRZ28_05690 PF01476 LysM domain NRZ28_05705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_05705 PF03466 LysR substrate binding domain NRZ28_05720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_05720 PF00672 HAMP domain NRZ28_05720 PF16591 Helical bimodular sensor domain NRZ28_05725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_05725 PF03466 LysR substrate binding domain NRZ28_05730 PF17092 Penicillin-binding protein OB-like domain NRZ28_05730 PF00912 Transglycosylase NRZ28_05730 PF00905 Penicillin binding protein transpeptidase domain NRZ28_05735 PF11104 Type IV pilus assembly protein PilM; NRZ28_05745 PF04350 Pilus assembly protein, PilO NRZ28_05755 PF07660 Secretin and TonB N terminus short domain NRZ28_05755 PF03958 Bacterial type II/III secretion system short domain NRZ28_05755 PF11741 AMIN domain NRZ28_05755 PF00263 Bacterial type II and III secretion system protein NRZ28_05760 PF01202 Shikimate kinase NRZ28_05765 PF01761 3-dehydroquinate synthase NRZ28_05775 PF02086 D12 class N6 adenine-specific DNA methyltransferase NRZ28_05785 PF00834 Ribulose-phosphate 3 epimerase family NRZ28_05790 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_05795 PF00579 tRNA synthetases class I (W and Y) NRZ28_05805 PF00117 Glutamine amidotransferase class-I NRZ28_05810 PF00202 Aminotransferase class-III NRZ28_05815 PF04958 Arginine N-succinyltransferase beta subunit NRZ28_05820 PF00171 Aldehyde dehydrogenase family NRZ28_05830 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_05835 PF07690 Major Facilitator Superfamily NRZ28_05840 PF10371 Domain of unknown function NRZ28_05840 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRZ28_05840 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRZ28_05840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRZ28_05840 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRZ28_05850 PF16657 Maltogenic Amylase, C-terminal domain NRZ28_05850 PF00128 Alpha amylase, catalytic domain NRZ28_05860 PF04266 ASCH domain NRZ28_05870 PF01048 Phosphorylase superfamily NRZ28_05875 PF04973 Nicotinamide mononucleotide transporter NRZ28_05880 PF03600 Citrate transporter NRZ28_05880 PF02080 TrkA-C domain NRZ28_05915 PF01926 50S ribosome-binding GTPase NRZ28_05915 PF06071 Protein of unknown function (DUF933) NRZ28_05920 PF01195 Peptidyl-tRNA hydrolase NRZ28_05925 PF02872 5'-nucleotidase, C-terminal domain NRZ28_05925 PF00149 Calcineurin-like phosphoesterase NRZ28_05930 PF14572 Phosphoribosyl synthetase-associated domain NRZ28_05930 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NRZ28_05940 PF00288 GHMP kinases N terminal domain NRZ28_05940 PF08544 GHMP kinases C terminal NRZ28_05945 PF03550 Outer membrane lipoprotein LolB NRZ28_05950 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NRZ28_05950 PF01488 Shikimate / quinate 5-dehydrogenase NRZ28_05950 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NRZ28_05955 PF03462 PCRF domain NRZ28_05955 PF00472 RF-1 domain NRZ28_05960 PF13847 Methyltransferase domain NRZ28_05960 PF17827 PrmC N-terminal domain NRZ28_05970 PF13369 Transglutaminase-like superfamily NRZ28_05975 PF00793 DAHP synthetase I family NRZ28_05980 PF00375 Sodium:dicarboxylate symporter family NRZ28_05985 PF01228 Glycine radical NRZ28_05990 PF03167 Uracil DNA glycosylase superfamily NRZ28_06005 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRZ28_06010 PF01235 Sodium:alanine symporter family NRZ28_06015 PF11992 Domain of unknown function (DUF3488) NRZ28_06015 PF01841 Transglutaminase-like superfamily NRZ28_06015 PF13559 Domain of unknown function (DUF4129) NRZ28_06025 PF07726 ATPase family associated with various cellular activities (AAA) NRZ28_06025 PF17863 AAA lid domain NRZ28_06030 PF00144 Beta-lactamase NRZ28_06035 PF00854 POT family NRZ28_06040 PF03652 Holliday junction resolvase NRZ28_06045 PF02622 Uncharacterized ACR, COG1678 NRZ28_06050 PF12729 Four helix bundle sensory module for signal transduction NRZ28_06050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_06050 PF00672 HAMP domain NRZ28_06055 PF00672 HAMP domain NRZ28_06055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_06060 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NRZ28_06060 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NRZ28_06065 PF04452 RNA methyltransferase NRZ28_06070 PF04231 Endonuclease I NRZ28_06075 PF17283 SprT-like zinc ribbon domain NRZ28_06075 PF10263 SprT-like family NRZ28_06080 PF02772 S-adenosylmethionine synthetase, central domain NRZ28_06080 PF00438 S-adenosylmethionine synthetase, N-terminal domain NRZ28_06080 PF02773 S-adenosylmethionine synthetase, C-terminal domain NRZ28_06085 PF02779 Transketolase, pyrimidine binding domain NRZ28_06085 PF02780 Transketolase, C-terminal domain NRZ28_06085 PF00456 Transketolase, thiamine diphosphate binding domain NRZ28_06095 PF01042 Endoribonuclease L-PSP NRZ28_06100 PF01965 DJ-1/PfpI family NRZ28_06105 PF03702 Anhydro-N-acetylmuramic acid kinase NRZ28_06110 PF01476 LysM domain NRZ28_06110 PF08525 Opacity-associated protein A N-terminal motif NRZ28_06110 PF01551 Peptidase family M23 NRZ28_06115 PF00579 tRNA synthetases class I (W and Y) NRZ28_06120 PF01204 Trehalase NRZ28_06130 PF01161 Phosphatidylethanolamine-binding protein NRZ28_06135 PF00709 Adenylosuccinate synthetase NRZ28_06140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_06140 PF03466 LysR substrate binding domain NRZ28_06150 PF00155 Aminotransferase class I and II NRZ28_06155 PF07690 Major Facilitator Superfamily NRZ28_06160 PF03466 LysR substrate binding domain NRZ28_06160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_06165 PF00106 short chain dehydrogenase NRZ28_06170 PF08496 Peptidase family S49 N-terminal NRZ28_06170 PF01343 Peptidase family S49 NRZ28_06175 PF04996 Succinylarginine dihydrolase NRZ28_06180 PF01131 DNA topoisomerase NRZ28_06180 PF01751 Toprim domain NRZ28_06180 PF01396 Topoisomerase DNA binding C4 zinc finger NRZ28_06180 PF08272 Topoisomerase I zinc-ribbon-like NRZ28_06195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_06195 PF08447 PAS fold NRZ28_06200 PF02838 Glycosyl hydrolase family 20, domain 2 NRZ28_06200 PF00728 Glycosyl hydrolase family 20, catalytic domain NRZ28_06205 PF01869 BadF/BadG/BcrA/BcrD ATPase family NRZ28_06215 PF00005 ABC transporter NRZ28_06215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_06220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_06220 PF00005 ABC transporter NRZ28_06225 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_06225 PF12911 N-terminal TM domain of oligopeptide transport permease C NRZ28_06230 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_06235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_06240 PF09308 LuxQ, periplasmic NRZ28_06240 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_06240 PF00072 Response regulator receiver domain NRZ28_06240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_06260 PF10725 Protein of unknown function (DUF2517) NRZ28_06270 PF05114 Protein of unknown function (DUF692) NRZ28_06295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_06295 PF08447 PAS fold NRZ28_06295 PF13426 PAS domain NRZ28_06310 PF04632 Fusaric acid resistance protein family NRZ28_06315 PF00994 Probable molybdopterin binding domain NRZ28_06315 PF03454 MoeA C-terminal region (domain IV) NRZ28_06315 PF03453 MoeA N-terminal region (domain I and II) NRZ28_06320 PF12804 MobA-like NTP transferase domain NRZ28_06325 PF00005 ABC transporter NRZ28_06330 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_06335 PF12849 PBP superfamily domain NRZ28_06340 PF00158 Sigma-54 interaction domain NRZ28_06340 PF00072 Response regulator receiver domain NRZ28_06340 PF02954 Bacterial regulatory protein, Fis family NRZ28_06345 PF00989 PAS fold NRZ28_06345 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_06345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_06350 PF12728 Helix-turn-helix domain NRZ28_06350 PF12727 PBP superfamily domain NRZ28_06355 PF02634 FdhD/NarQ family NRZ28_06360 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_06360 PF17866 AAA lid domain NRZ28_06390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRZ28_06390 PF01568 Molydopterin dinucleotide binding domain NRZ28_06390 PF00384 Molybdopterin oxidoreductase NRZ28_06390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRZ28_06390 PF01568 Molydopterin dinucleotide binding domain NRZ28_06390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRZ28_06390 PF00384 Molybdopterin oxidoreductase NRZ28_06390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRZ28_06390 PF12838 4Fe-4S dicluster domain NRZ28_06390 PF12838 4Fe-4S dicluster domain NRZ28_06395 PF13247 4Fe-4S dicluster domain NRZ28_06405 PF00072 Response regulator receiver domain NRZ28_06410 PF03949 Malic enzyme, NAD binding domain NRZ28_06410 PF00390 Malic enzyme, N-terminal domain NRZ28_06415 PF16998 17 kDa outer membrane surface antigen NRZ28_06415 PF05433 Glycine zipper 2TM domain NRZ28_06420 PF01458 Uncharacterized protein family (UPF0051) NRZ28_06425 PF00860 Permease family NRZ28_06430 PF10282 Lactonase, 7-bladed beta-propeller NRZ28_06440 PF00924 Mechanosensitive ion channel NRZ28_06440 PF12795 Mechanosensitive ion channel porin domain NRZ28_06440 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRZ28_06445 PF02887 Pyruvate kinase, alpha/beta domain NRZ28_06445 PF00224 Pyruvate kinase, barrel domain NRZ28_06455 PF04389 Peptidase family M28 NRZ28_06455 PF04151 Bacterial pre-peptidase C-terminal domain NRZ28_06460 PF00999 Sodium/hydrogen exchanger family NRZ28_06460 PF02254 TrkA-N domain NRZ28_06470 PF04381 Putative exonuclease, RdgC NRZ28_06480 PF00149 Calcineurin-like phosphoesterase NRZ28_06480 PF12320 Type 5 capsule protein repressor C-terminal domain NRZ28_06485 PF13476 AAA domain NRZ28_06495 PF01292 Prokaryotic cytochrome b561 NRZ28_06505 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_06510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRZ28_06515 PF05524 PEP-utilising enzyme, N-terminal NRZ28_06515 PF00391 PEP-utilising enzyme, mobile domain NRZ28_06515 PF02896 PEP-utilising enzyme, TIM barrel domain NRZ28_06520 PF00381 PTS HPr component phosphorylation site NRZ28_06525 PF00291 Pyridoxal-phosphate dependent enzyme NRZ28_06530 PF17871 AAA lid domain NRZ28_06530 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_06530 PF07724 AAA domain (Cdc48 subfamily) NRZ28_06530 PF02861 Clp amino terminal domain, pathogenicity island component NRZ28_06530 PF10431 C-terminal, D2-small domain, of ClpB protein NRZ28_06540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRZ28_06540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRZ28_06545 PF01966 HD domain NRZ28_06545 PF00672 HAMP domain NRZ28_06550 PF01980 tRNA-methyltransferase O NRZ28_06550 PF18389 TrmO C-terminal domain NRZ28_06570 PF00664 ABC transporter transmembrane region NRZ28_06570 PF00005 ABC transporter NRZ28_06575 PF00005 ABC transporter NRZ28_06575 PF00664 ABC transporter transmembrane region NRZ28_06590 PF00072 Response regulator receiver domain NRZ28_06590 PF00486 Transcriptional regulatory protein, C terminal NRZ28_06600 PF03737 Aldolase/RraA NRZ28_06615 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NRZ28_06620 PF00588 SpoU rRNA Methylase family NRZ28_06625 PF00696 Amino acid kinase family NRZ28_06625 PF01842 ACT domain NRZ28_06625 PF13840 ACT domain NRZ28_06625 PF00742 Homoserine dehydrogenase NRZ28_06625 PF03447 Homoserine dehydrogenase, NAD binding domain NRZ28_06630 PF08544 GHMP kinases C terminal NRZ28_06630 PF00288 GHMP kinases N terminal domain NRZ28_06635 PF00291 Pyridoxal-phosphate dependent enzyme NRZ28_06635 PF14821 Threonine synthase N terminus NRZ28_06640 PF13474 SnoaL-like domain NRZ28_06655 PF12848 ABC transporter NRZ28_06655 PF00005 ABC transporter NRZ28_06670 PF01048 Phosphorylase superfamily NRZ28_06685 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_06685 PF00072 Response regulator receiver domain NRZ28_06685 PF01627 Hpt domain NRZ28_06685 PF00989 PAS fold NRZ28_06685 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_06690 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NRZ28_06695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRZ28_06695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRZ28_06700 PF02690 Na+/Pi-cotransporter NRZ28_06710 PF13520 Amino acid permease NRZ28_06720 PF00324 Amino acid permease NRZ28_06730 PF00202 Aminotransferase class-III NRZ28_06735 PF00171 Aldehyde dehydrogenase family NRZ28_06740 PF07883 Cupin domain NRZ28_06740 PF01381 Helix-turn-helix NRZ28_06745 PF01266 FAD dependent oxidoreductase NRZ28_06770 PF00816 H-NS histone family NRZ28_06775 PF00793 DAHP synthetase I family NRZ28_06780 PF08021 Siderophore-interacting FAD-binding domain NRZ28_06780 PF04954 Siderophore-interacting protein NRZ28_06785 PF02321 Outer membrane efflux protein NRZ28_06790 PF02687 FtsX-like permease family NRZ28_06790 PF12704 MacB-like periplasmic core domain NRZ28_06790 PF00005 ABC transporter NRZ28_06795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_06805 PF02833 DHHA2 domain NRZ28_06805 PF01368 DHH family NRZ28_06810 PF02463 RecF/RecN/SMC N terminal domain NRZ28_06815 PF01513 ATP-NAD kinase NRZ28_06820 PF01025 GrpE NRZ28_06825 PF00012 Hsp70 protein NRZ28_06830 PF00226 DnaJ domain NRZ28_06830 PF01556 DnaJ C terminal domain NRZ28_06830 PF00684 DnaJ central domain NRZ28_06835 PF11471 Maltoporin periplasmic N-terminal extension NRZ28_06835 PF02264 LamB porin NRZ28_06840 PF00294 pfkB family carbohydrate kinase NRZ28_06845 PF00367 phosphotransferase system, EIIB NRZ28_06845 PF02378 Phosphotransferase system, EIIC NRZ28_06850 PF08244 Glycosyl hydrolases family 32 C terminal NRZ28_06850 PF00251 Glycosyl hydrolases family 32 N-terminal domain NRZ28_06855 PF00356 Bacterial regulatory proteins, lacI family NRZ28_06855 PF13407 Periplasmic binding protein domain NRZ28_06860 PF02308 MgtC family NRZ28_06870 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_06885 PF04143 Sulphur transport NRZ28_06900 PF00873 AcrB/AcrD/AcrF family NRZ28_06905 PF00563 EAL domain NRZ28_06905 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_06905 PF03707 Bacterial signalling protein N terminal repeat NRZ28_06910 PF03099 Biotin/lipoate A/B protein ligase family NRZ28_06910 PF10437 Bacterial lipoate protein ligase C-terminus NRZ28_06930 PF00873 AcrB/AcrD/AcrF family NRZ28_06935 PF00529 HlyD membrane-fusion protein of T1SS NRZ28_06935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_06945 PF00873 AcrB/AcrD/AcrF family NRZ28_06950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_06955 PF03372 Endonuclease/Exonuclease/phosphatase family NRZ28_06970 PF07690 Major Facilitator Superfamily NRZ28_06975 PF02424 ApbE family NRZ28_06980 PF00127 Copper binding proteins, plastocyanin/azurin family NRZ28_06995 PF01156 Inosine-uridine preferring nucleoside hydrolase NRZ28_07005 PF00034 Cytochrome c NRZ28_07005 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRZ28_07015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRZ28_07015 PF06481 COX Aromatic Rich Motif NRZ28_07020 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRZ28_07025 PF00510 Cytochrome c oxidase subunit III NRZ28_07030 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NRZ28_07035 PF01040 UbiA prenyltransferase family NRZ28_07040 PF07690 Major Facilitator Superfamily NRZ28_07050 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRZ28_07055 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_07060 PF00005 ABC transporter NRZ28_07065 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NRZ28_07075 PF07670 Nucleoside recognition NRZ28_07075 PF07662 Na+ dependent nucleoside transporter C-terminus NRZ28_07075 PF01773 Na+ dependent nucleoside transporter N-terminus NRZ28_07095 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRZ28_07120 PF00290 Tryptophan synthase alpha chain NRZ28_07125 PF00291 Pyridoxal-phosphate dependent enzyme NRZ28_07130 PF00218 Indole-3-glycerol phosphate synthase NRZ28_07130 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NRZ28_07135 PF02885 Glycosyl transferase family, helical bundle domain NRZ28_07135 PF00591 Glycosyl transferase family, a/b domain NRZ28_07140 PF02885 Glycosyl transferase family, helical bundle domain NRZ28_07140 PF00591 Glycosyl transferase family, a/b domain NRZ28_07140 PF00117 Glutamine amidotransferase class-I NRZ28_07145 PF04715 Anthranilate synthase component I, N terminal region NRZ28_07145 PF00425 chorismate binding enzyme NRZ28_07150 PF02811 PHP domain NRZ28_07155 PF01300 Telomere recombination NRZ28_07160 PF02616 Segregation and condensation protein ScpA NRZ28_07165 PF04079 Segregation and condensation complex subunit ScpB NRZ28_07170 PF00849 RNA pseudouridylate synthase NRZ28_07170 PF01479 S4 domain NRZ28_07190 PF00440 Bacterial regulatory proteins, tetR family NRZ28_07190 PF08361 MAATS-type transcriptional repressor, C-terminal region NRZ28_07195 PF00529 HlyD membrane-fusion protein of T1SS NRZ28_07195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_07200 PF00873 AcrB/AcrD/AcrF family NRZ28_07205 PF02321 Outer membrane efflux protein NRZ28_07210 PF16363 GDP-mannose 4,6 dehydratase NRZ28_07215 PF04321 RmlD substrate binding domain NRZ28_07220 PF00483 Nucleotidyl transferase NRZ28_07225 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NRZ28_07230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRZ28_07235 PF00583 Acetyltransferase (GNAT) family NRZ28_07235 PF13508 Acetyltransferase (GNAT) domain NRZ28_07240 PF01061 ABC-2 type transporter NRZ28_07245 PF00005 ABC transporter NRZ28_07245 PF14524 Wzt C-terminal domain NRZ28_07250 PF00535 Glycosyl transferase family 2 NRZ28_07255 PF01209 ubiE/COQ5 methyltransferase family NRZ28_07275 PF01370 NAD dependent epimerase/dehydratase family NRZ28_07280 PF00953 Glycosyl transferase family 4 NRZ28_07285 PF02719 Polysaccharide biosynthesis protein NRZ28_07295 PF01047 MarR family NRZ28_07295 PF00480 ROK family NRZ28_07300 PF01979 Amidohydrolase family NRZ28_07305 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NRZ28_07310 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NRZ28_07310 PF00367 phosphotransferase system, EIIB NRZ28_07310 PF02378 Phosphotransferase system, EIIC NRZ28_07315 PF03173 Putative carbohydrate binding domain NRZ28_07315 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NRZ28_07315 PF00728 Glycosyl hydrolase family 20, catalytic domain NRZ28_07315 PF02838 Glycosyl hydrolase family 20, domain 2 NRZ28_07320 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRZ28_07320 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NRZ28_07325 PF01475 Ferric uptake regulator family NRZ28_07335 PF00258 Flavodoxin NRZ28_07340 PF01402 Ribbon-helix-helix protein, copG family NRZ28_07350 PF12697 Alpha/beta hydrolase family NRZ28_07355 PF03925 SeqA protein C-terminal domain NRZ28_07355 PF17206 SeqA protein N-terminal domain NRZ28_07360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRZ28_07360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRZ28_07360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRZ28_07360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRZ28_07370 PF01047 MarR family NRZ28_07375 PF13406 Transglycosylase SLT domain NRZ28_07380 PF01066 CDP-alcohol phosphatidyltransferase NRZ28_07385 PF00005 ABC transporter NRZ28_07395 PF13416 Bacterial extracellular solute-binding protein NRZ28_07400 PF00403 Heavy-metal-associated domain NRZ28_07400 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_07400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRZ28_07405 PF02627 Carboxymuconolactone decarboxylase family NRZ28_07415 PF01625 Peptide methionine sulfoxide reductase NRZ28_07430 PF01103 Surface antigen NRZ28_07430 PF07244 Surface antigen variable number repeat NRZ28_07430 PF17243 POTRA domain TamA domain 1 NRZ28_07435 PF04357 TamB, inner membrane protein subunit of TAM complex NRZ28_07455 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRZ28_07460 PF00563 EAL domain NRZ28_07460 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_07460 PF03707 Bacterial signalling protein N terminal repeat NRZ28_07465 PF01464 Transglycosylase SLT domain NRZ28_07465 PF14718 Soluble lytic murein transglycosylase L domain NRZ28_07470 PF00356 Bacterial regulatory proteins, lacI family NRZ28_07480 PF03061 Thioesterase superfamily NRZ28_07490 PF03372 Endonuclease/Exonuclease/phosphatase family NRZ28_07495 PF01476 LysM domain NRZ28_07495 PF01464 Transglycosylase SLT domain NRZ28_07500 PF16123 Hydroxyacylglutathione hydrolase C-terminus NRZ28_07500 PF00753 Metallo-beta-lactamase superfamily NRZ28_07505 PF08241 Methyltransferase domain NRZ28_07510 PF00075 RNase H NRZ28_07515 PF00929 Exonuclease NRZ28_07525 PF11849 Domain of unknown function (DUF3369) NRZ28_07530 PF02770 Acyl-CoA dehydrogenase, middle domain NRZ28_07530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRZ28_07530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRZ28_07530 PF09317 Domain of unknown function (DUF1974) NRZ28_07535 PF13580 SIS domain NRZ28_07540 PF13230 Glutamine amidotransferases class-II NRZ28_07550 PF01933 Uncharacterised protein family UPF0052 NRZ28_07560 PF00072 Response regulator receiver domain NRZ28_07560 PF00672 HAMP domain NRZ28_07560 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_07560 PF01627 Hpt domain NRZ28_07560 PF17149 Periplasmic sensor domain found in signal transduction proteins NRZ28_07570 PF00196 Bacterial regulatory proteins, luxR family NRZ28_07570 PF00072 Response regulator receiver domain NRZ28_07575 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NRZ28_07575 PF07730 Histidine kinase NRZ28_07575 PF00672 HAMP domain NRZ28_07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_07580 PF06463 Molybdenum Cofactor Synthesis C NRZ28_07580 PF04055 Radical SAM superfamily NRZ28_07585 PF00037 4Fe-4S binding domain NRZ28_07585 PF12800 4Fe-4S binding domain NRZ28_07585 PF13187 4Fe-4S dicluster domain NRZ28_07595 PF01568 Molydopterin dinucleotide binding domain NRZ28_07595 PF00384 Molybdopterin oxidoreductase NRZ28_07595 PF10518 TAT (twin-arginine translocation) pathway signal sequence NRZ28_07595 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRZ28_07600 PF12800 4Fe-4S binding domain NRZ28_07600 PF12838 4Fe-4S dicluster domain NRZ28_07605 PF13237 4Fe-4S dicluster domain NRZ28_07605 PF12801 4Fe-4S binding domain NRZ28_07610 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NRZ28_07615 PF03264 NapC/NirT cytochrome c family, N-terminal region NRZ28_07620 PF00994 Probable molybdopterin binding domain NRZ28_07625 PF01967 MoaC family NRZ28_07630 PF02597 ThiS family NRZ28_07635 PF02391 MoaE protein NRZ28_07645 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_07650 PF00005 ABC transporter NRZ28_07650 PF03459 TOBE domain NRZ28_07655 PF00561 alpha/beta hydrolase fold NRZ28_07660 PF00899 ThiF family NRZ28_07665 PF03454 MoeA C-terminal region (domain IV) NRZ28_07665 PF00994 Probable molybdopterin binding domain NRZ28_07665 PF03453 MoeA N-terminal region (domain I and II) NRZ28_07670 PF01227 GTP cyclohydrolase I NRZ28_07675 PF00672 HAMP domain NRZ28_07675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_07675 PF17200 Single Cache domain 2 NRZ28_07680 PF01268 Formate--tetrahydrofolate ligase NRZ28_07690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_07690 PF03466 LysR substrate binding domain NRZ28_07695 PF04264 YceI-like domain NRZ28_07720 PF07687 Peptidase dimerisation domain NRZ28_07720 PF01546 Peptidase family M20/M25/M40 NRZ28_07735 PF17810 Arginine decarboxylase helical bundle domain NRZ28_07735 PF17944 Arginine decarboxylase C-terminal helical extension NRZ28_07735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRZ28_07750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_07750 PF00672 HAMP domain NRZ28_07760 PF01042 Endoribonuclease L-PSP NRZ28_07765 PF03313 Serine dehydratase alpha chain NRZ28_07770 PF13309 HTH domain NRZ28_07770 PF08348 YheO-like PAS domain NRZ28_07775 PF00300 Histidine phosphatase superfamily (branch 1) NRZ28_07780 PF01844 HNH endonuclease NRZ28_07800 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NRZ28_07800 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NRZ28_07805 PF00849 RNA pseudouridylate synthase NRZ28_07805 PF01479 S4 domain NRZ28_07810 PF09101 Exotoxin A binding NRZ28_07810 PF09009 Exotoxin A catalytic NRZ28_07810 PF09102 Exotoxin A, targeting NRZ28_07815 PF07690 Major Facilitator Superfamily NRZ28_07825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_07825 PF03466 LysR substrate binding domain NRZ28_07830 PF07690 Major Facilitator Superfamily NRZ28_07840 PF10689 Protein of unknown function (DUF2496) NRZ28_07855 PF04391 Protein of unknown function (DUF533) NRZ28_07865 PF00392 Bacterial regulatory proteins, gntR family NRZ28_07865 PF00155 Aminotransferase class I and II NRZ28_07870 PF01654 Cytochrome bd terminal oxidase subunit I NRZ28_07875 PF02322 Cytochrome bd terminal oxidase subunit II NRZ28_07885 PF07690 Major Facilitator Superfamily NRZ28_07890 PF00248 Aldo/keto reductase family NRZ28_07915 PF03466 LysR substrate binding domain NRZ28_07915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_07920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRZ28_07920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NRZ28_07925 PF00230 Major intrinsic protein NRZ28_07930 PF07690 Major Facilitator Superfamily NRZ28_07935 PF08220 DeoR-like helix-turn-helix domain NRZ28_07935 PF00455 DeoR C terminal sensor domain NRZ28_07945 PF01266 FAD dependent oxidoreductase NRZ28_07945 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NRZ28_07950 PF03009 Glycerophosphoryl diester phosphodiesterase family NRZ28_07955 PF00793 DAHP synthetase I family NRZ28_07960 PF01817 Chorismate mutase type II NRZ28_07960 PF02153 Prephenate dehydrogenase NRZ28_07965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_07965 PF03466 LysR substrate binding domain NRZ28_07970 PF04219 Protein of unknown function, DUF NRZ28_07975 PF03974 Ecotin NRZ28_07995 PF00326 Prolyl oligopeptidase family NRZ28_07995 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRZ28_08000 PF00593 TonB dependent receptor NRZ28_08000 PF07715 TonB-dependent Receptor Plug Domain NRZ28_08005 PF11893 Domain of unknown function (DUF3413) NRZ28_08005 PF00884 Sulfatase NRZ28_08010 PF07208 Protein of unknown function (DUF1414) NRZ28_08015 PF04245 37-kD nucleoid-associated bacterial protein NRZ28_08020 PF01547 Bacterial extracellular solute-binding protein NRZ28_08025 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_08025 PF14785 Maltose transport system permease protein MalF P2 domain NRZ28_08030 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_08035 PF00005 ABC transporter NRZ28_08035 PF08402 TOBE domain NRZ28_08040 PF03976 Polyphosphate kinase 2 (PPK2) NRZ28_08045 PF00561 alpha/beta hydrolase fold NRZ28_08055 PF01594 AI-2E family transporter NRZ28_08060 PF01206 Sulfurtransferase TusA NRZ28_08065 PF01435 Peptidase family M48 NRZ28_08065 PF13181 Tetratricopeptide repeat NRZ28_08070 PF00578 AhpC/TSA family NRZ28_08075 PF03960 ArsC family NRZ28_08090 PF04336 Acyl carrier protein phosphodiesterase NRZ28_08100 PF03956 Lysine exporter LysO NRZ28_08105 PF00005 ABC transporter NRZ28_08110 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_08115 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_08120 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_08130 PF04055 Radical SAM superfamily NRZ28_08135 PF00563 EAL domain NRZ28_08135 PF03707 Bacterial signalling protein N terminal repeat NRZ28_08135 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_08140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRZ28_08140 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_08145 PF00207 Alpha-2-macroglobulin family NRZ28_08145 PF07703 Alpha-2-macroglobulin bait region domain NRZ28_08145 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NRZ28_08145 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NRZ28_08145 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NRZ28_08145 PF17962 Bacterial macroglobulin domain 6 NRZ28_08145 PF01835 MG2 domain NRZ28_08145 PF07678 A-macroglobulin TED domain NRZ28_08145 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NRZ28_08150 PF00905 Penicillin binding protein transpeptidase domain NRZ28_08150 PF00912 Transglycosylase NRZ28_08150 PF06832 Penicillin-Binding Protein C-terminus Family NRZ28_08160 PF02568 Thiamine biosynthesis protein (ThiI) NRZ28_08160 PF02926 THUMP domain NRZ28_08170 PF03458 UPF0126 domain NRZ28_08175 PF00700 Bacterial flagellin C-terminal helical region NRZ28_08175 PF00669 Bacterial flagellin N-terminal helical region NRZ28_08180 PF00669 Bacterial flagellin N-terminal helical region NRZ28_08180 PF07196 Flagellin hook IN motif NRZ28_08180 PF00700 Bacterial flagellin C-terminal helical region NRZ28_08190 PF07196 Flagellin hook IN motif NRZ28_08190 PF02465 Flagellar hook-associated protein 2 N-terminus NRZ28_08190 PF07195 Flagellar hook-associated protein 2 C-terminus NRZ28_08195 PF02561 Flagellar protein FliS NRZ28_08210 PF01497 Periplasmic binding protein NRZ28_08220 PF01048 Phosphorylase superfamily NRZ28_08230 PF02535 ZIP Zinc transporter NRZ28_08235 PF12729 Four helix bundle sensory module for signal transduction NRZ28_08235 PF00672 HAMP domain NRZ28_08235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_08240 PF00459 Inositol monophosphatase family NRZ28_08250 PF02798 Glutathione S-transferase, N-terminal domain NRZ28_08250 PF00043 Glutathione S-transferase, C-terminal domain NRZ28_08255 PF07690 Major Facilitator Superfamily NRZ28_08265 PF05164 Cell division protein ZapA NRZ28_08270 PF03695 Uncharacterised protein family (UPF0149) NRZ28_08275 PF01494 FAD binding domain NRZ28_08280 PF01494 FAD binding domain NRZ28_08285 PF01571 Aminomethyltransferase folate-binding domain NRZ28_08285 PF08669 Glycine cleavage T-protein C-terminal barrel domain NRZ28_08290 PF01597 Glycine cleavage H-protein NRZ28_08295 PF02347 Glycine cleavage system P-protein NRZ28_08300 PF01022 Bacterial regulatory protein, arsR family NRZ28_08305 PF01758 Sodium Bile acid symporter family NRZ28_08310 PF03960 ArsC family NRZ28_08315 PF08241 Methyltransferase domain NRZ28_08325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_08325 PF00989 PAS fold NRZ28_08325 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_08330 PF07690 Major Facilitator Superfamily NRZ28_08335 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_08335 PF13192 Thioredoxin domain NRZ28_08340 PF00578 AhpC/TSA family NRZ28_08340 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRZ28_08345 PF00571 CBS domain NRZ28_08350 PF02547 Queuosine biosynthesis protein NRZ28_08355 PF01702 Queuine tRNA-ribosyltransferase NRZ28_08360 PF02699 Preprotein translocase subunit NRZ28_08365 PF13721 SecD export protein N-terminal TM region NRZ28_08365 PF02355 Protein export membrane protein NRZ28_08365 PF07549 SecD/SecF GG Motif NRZ28_08370 PF07549 SecD/SecF GG Motif NRZ28_08370 PF02355 Protein export membrane protein NRZ28_08375 PF00581 Rhodanese-like domain NRZ28_08380 PF07719 Tetratricopeptide repeat NRZ28_08380 PF13181 Tetratricopeptide repeat NRZ28_08385 PF01136 Peptidase family U32 NRZ28_08390 PF01136 Peptidase family U32 NRZ28_08395 PF02036 SCP-2 sterol transfer family NRZ28_08405 PF00588 SpoU rRNA Methylase family NRZ28_08410 PF02082 Transcriptional regulator NRZ28_08415 PF00266 Aminotransferase class-V NRZ28_08420 PF01592 NifU-like N terminal domain NRZ28_08425 PF01521 Iron-sulphur cluster biosynthesis NRZ28_08430 PF07743 HSCB C-terminal oligomerisation domain NRZ28_08435 PF00012 Hsp70 protein NRZ28_08440 PF00111 2Fe-2S iron-sulfur cluster binding domain NRZ28_08445 PF12404 Peptidase NRZ28_08445 PF00883 Cytosol aminopeptidase family, catalytic domain NRZ28_08450 PF00883 Cytosol aminopeptidase family, catalytic domain NRZ28_08450 PF12404 Peptidase NRZ28_08455 PF00334 Nucleoside diphosphate kinase NRZ28_08460 PF04055 Radical SAM superfamily NRZ28_08470 PF13464 Domain of unknown function (DUF4115) NRZ28_08475 PF04551 GcpE protein NRZ28_08480 PF13393 Histidyl-tRNA synthetase NRZ28_08480 PF03129 Anticodon binding domain NRZ28_08485 PF09976 Tetratricopeptide repeat-like domain NRZ28_08490 PF13360 PQQ-like domain NRZ28_08495 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NRZ28_08495 PF01926 50S ribosome-binding GTPase NRZ28_08500 PF07191 zinc-ribbons NRZ28_08505 PF01464 Transglycosylase SLT domain NRZ28_08505 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_08510 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NRZ28_08510 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NRZ28_08510 PF02769 AIR synthase related protein, C-terminal domain NRZ28_08515 PF00361 Proton-conducting membrane transporter NRZ28_08520 PF00361 Proton-conducting membrane transporter NRZ28_08525 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NRZ28_08525 PF00361 Proton-conducting membrane transporter NRZ28_08530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NRZ28_08535 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NRZ28_08540 PF12838 4Fe-4S dicluster domain NRZ28_08545 PF00146 NADH dehydrogenase NRZ28_08550 PF00384 Molybdopterin oxidoreductase NRZ28_08550 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRZ28_08550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NRZ28_08555 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRZ28_08555 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRZ28_08565 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRZ28_08565 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRZ28_08570 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRZ28_08575 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NRZ28_08580 PF00691 OmpA family NRZ28_08580 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRZ28_08585 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_08605 PF04536 TPM domain NRZ28_08615 PF03411 Penicillin-insensitive murein endopeptidase NRZ28_08625 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NRZ28_08630 PF00248 Aldo/keto reductase family NRZ28_08645 PF01212 Beta-eliminating lyase NRZ28_08655 PF00072 Response regulator receiver domain NRZ28_08660 PF03466 LysR substrate binding domain NRZ28_08660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_08670 PF00563 EAL domain NRZ28_08670 PF03707 Bacterial signalling protein N terminal repeat NRZ28_08670 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_08670 PF13188 PAS domain NRZ28_08675 PF00881 Nitroreductase family NRZ28_08690 PF07690 Major Facilitator Superfamily NRZ28_08695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_08695 PF03466 LysR substrate binding domain NRZ28_08700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_08700 PF03466 LysR substrate binding domain NRZ28_08705 PF00925 GTP cyclohydrolase II NRZ28_08710 PF02224 Cytidylate kinase NRZ28_08715 PF00575 S1 RNA binding domain NRZ28_08720 PF00216 Bacterial DNA-binding protein NRZ28_08730 PF18073 Rubredoxin metal binding domain NRZ28_08735 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NRZ28_08750 PF06508 Queuosine biosynthesis protein QueC NRZ28_08755 PF04055 Radical SAM superfamily NRZ28_08760 PF12843 Putative quorum-sensing-regulated virulence factor NRZ28_08765 PF01923 Cobalamin adenosyltransferase NRZ28_08770 PF00816 H-NS histone family NRZ28_08775 PF03553 Na+/H+ antiporter family NRZ28_08780 PF00265 Thymidine kinase NRZ28_08790 PF10722 Putative bacterial sensory transduction regulator NRZ28_08810 PF05638 Type VI secretion system effector, Hcp NRZ28_08815 PF04717 Type VI secretion system, phage-baseplate injector NRZ28_08845 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NRZ28_08855 PF05947 Type VI secretion system, TssF NRZ28_08875 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NRZ28_08885 PF07724 AAA domain (Cdc48 subfamily) NRZ28_08885 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_08885 PF10431 C-terminal, D2-small domain, of ClpB protein NRZ28_08885 PF17871 AAA lid domain NRZ28_08890 PF00158 Sigma-54 interaction domain NRZ28_08890 PF02954 Bacterial regulatory protein, Fis family NRZ28_08905 PF14331 ImcF-related N-terminal domain NRZ28_08905 PF06744 Type VI secretion protein IcmF C-terminal NRZ28_08905 PF06761 Intracellular multiplication and human macrophage-killing NRZ28_08920 PF04717 Type VI secretion system, phage-baseplate injector NRZ28_08955 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NRZ28_08955 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NRZ28_08960 PF00313 'Cold-shock' DNA-binding domain NRZ28_08965 PF02617 ATP-dependent Clp protease adaptor protein ClpS NRZ28_08970 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_08970 PF02861 Clp amino terminal domain, pathogenicity island component NRZ28_08970 PF10431 C-terminal, D2-small domain, of ClpB protein NRZ28_08970 PF07724 AAA domain (Cdc48 subfamily) NRZ28_08970 PF17871 AAA lid domain NRZ28_08975 PF01176 Translation initiation factor 1A / IF-1 NRZ28_08980 PF04377 Arginine-tRNA-protein transferase, C terminus NRZ28_08980 PF04376 Arginine-tRNA-protein transferase, N terminus NRZ28_08985 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NRZ28_08990 PF05433 Glycine zipper 2TM domain NRZ28_08995 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_08995 PF17158 Membrane-associated sensor, integral membrane domain NRZ28_09000 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_09005 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRZ28_09005 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRZ28_09010 PF01037 Lrp/AsnC ligand binding domain NRZ28_09015 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NRZ28_09015 PF09397 Ftsk gamma domain NRZ28_09015 PF01580 FtsK/SpoIIIE family NRZ28_09015 PF17854 FtsK alpha domain NRZ28_09020 PF03548 Outer membrane lipoprotein carrier protein LolA NRZ28_09025 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_09025 PF16193 AAA C-terminal domain NRZ28_09025 PF12002 MgsA AAA+ ATPase C terminal NRZ28_09030 PF02403 Seryl-tRNA synthetase N-terminal domain NRZ28_09030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRZ28_09035 PF02674 Colicin V production protein NRZ28_09040 PF00156 Phosphoribosyl transferase domain NRZ28_09045 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NRZ28_09050 PF00005 ABC transporter NRZ28_09055 PF00005 ABC transporter NRZ28_09055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_09060 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_09060 PF12911 N-terminal TM domain of oligopeptide transport permease C NRZ28_09065 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_09070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_09075 PF02954 Bacterial regulatory protein, Fis family NRZ28_09075 PF00158 Sigma-54 interaction domain NRZ28_09080 PF04012 PspA/IM30 family NRZ28_09085 PF06667 Phage shock protein B NRZ28_09095 PF04317 YcjX-like family, DUF463 NRZ28_09100 PF05128 Domain of unknown function (DUF697) NRZ28_09105 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NRZ28_09110 PF01329 Pterin 4 alpha carbinolamine dehydratase NRZ28_09120 PF18024 Helix-turn-helix domain NRZ28_09120 PF00158 Sigma-54 interaction domain NRZ28_09125 PF13689 YfiR/HmsC-like NRZ28_09130 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_09130 PF17152 Periplasmic sensor domain NRZ28_09135 PF00691 OmpA family NRZ28_09140 PF03741 Integral membrane protein TerC family NRZ28_09150 PF08891 YfcL protein NRZ28_09155 PF00501 AMP-binding enzyme NRZ28_09160 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NRZ28_09160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRZ28_09165 PF04172 LrgB-like family NRZ28_09170 PF03788 LrgA family NRZ28_09185 PF08411 Exonuclease C-terminal NRZ28_09185 PF00929 Exonuclease NRZ28_09190 PF02610 L-arabinose isomerase NRZ28_09190 PF11762 L-arabinose isomerase C-terminal domain NRZ28_09195 PF00596 Class II Aldolase and Adducin N-terminal domain NRZ28_09200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRZ28_09205 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRZ28_09210 PF00005 ABC transporter NRZ28_09215 PF02653 Branched-chain amino acid transport system / permease component NRZ28_09220 PF02311 AraC-like ligand binding domain NRZ28_09220 PF12833 Helix-turn-helix domain NRZ28_09225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_09225 PF03466 LysR substrate binding domain NRZ28_09230 PF02678 Pirin NRZ28_09230 PF05726 Pirin C-terminal cupin domain NRZ28_09235 PF00444 Ribosomal protein L36 NRZ28_09240 PF01197 Ribosomal protein L31 NRZ28_09255 PF01863 Protein of unknown function DUF45 NRZ28_09270 PF03606 C4-dicarboxylate anaerobic carrier NRZ28_09280 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NRZ28_09280 PF01266 FAD dependent oxidoreductase NRZ28_09285 PF00109 Beta-ketoacyl synthase, N-terminal domain NRZ28_09285 PF02801 Beta-ketoacyl synthase, C-terminal domain NRZ28_09300 PF00285 Citrate synthase, C-terminal domain NRZ28_09305 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRZ28_09310 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRZ28_09315 PF02910 Fumarate reductase flavoprotein C-term NRZ28_09315 PF00890 FAD binding domain NRZ28_09320 PF13085 2Fe-2S iron-sulfur cluster binding domain NRZ28_09325 PF16078 2-oxoglutarate dehydrogenase N-terminus NRZ28_09325 PF00676 Dehydrogenase E1 component NRZ28_09325 PF16870 2-oxoglutarate dehydrogenase C-terminal NRZ28_09325 PF02779 Transketolase, pyrimidine binding domain NRZ28_09330 PF02817 e3 binding domain NRZ28_09330 PF00364 Biotin-requiring enzyme NRZ28_09330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRZ28_09335 PF00549 CoA-ligase NRZ28_09335 PF08442 ATP-grasp domain NRZ28_09340 PF00549 CoA-ligase NRZ28_09340 PF02629 CoA binding domain NRZ28_09350 PF03692 Putative zinc- or iron-chelating domain NRZ28_09355 PF01266 FAD dependent oxidoreductase NRZ28_09360 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_09365 PF00005 ABC transporter NRZ28_09375 PF07702 UTRA domain NRZ28_09375 PF00392 Bacterial regulatory proteins, gntR family NRZ28_09380 PF00266 Aminotransferase class-V NRZ28_09385 PF00202 Aminotransferase class-III NRZ28_09395 PF02901 Pyruvate formate lyase-like NRZ28_09395 PF01228 Glycine radical NRZ28_09400 PF01226 Formate/nitrite transporter NRZ28_09405 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NRZ28_09405 PF18381 YcaO cyclodehydratase C-terminal domain NRZ28_09410 PF00893 Small Multidrug Resistance protein NRZ28_09415 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRZ28_09415 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRZ28_09420 PF00675 Insulinase (Peptidase family M16) NRZ28_09420 PF05193 Peptidase M16 inactive domain NRZ28_09425 PF01053 Cys/Met metabolism PLP-dependent enzyme NRZ28_09435 PF13460 NAD(P)H-binding NRZ28_09440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_09440 PF03466 LysR substrate binding domain NRZ28_09445 PF00106 short chain dehydrogenase NRZ28_09450 PF12833 Helix-turn-helix domain NRZ28_09455 PF00593 TonB dependent receptor NRZ28_09455 PF07715 TonB-dependent Receptor Plug Domain NRZ28_09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_09465 PF03466 LysR substrate binding domain NRZ28_09470 PF08267 Cobalamin-independent synthase, N-terminal domain NRZ28_09470 PF01717 Cobalamin-independent synthase, Catalytic domain NRZ28_09480 PF00571 CBS domain NRZ28_09480 PF00478 IMP dehydrogenase / GMP reductase domain NRZ28_09485 PF07969 Amidohydrolase family NRZ28_09495 PF01266 FAD dependent oxidoreductase NRZ28_09500 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NRZ28_09510 PF01212 Beta-eliminating lyase NRZ28_09515 PF01497 Periplasmic binding protein NRZ28_09520 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NRZ28_09520 PF01648 4'-phosphopantetheinyl transferase superfamily NRZ28_09525 PF00005 ABC transporter NRZ28_09530 PF01032 FecCD transport family NRZ28_09535 PF01032 FecCD transport family NRZ28_09540 PF07715 TonB-dependent Receptor Plug Domain NRZ28_09540 PF00593 TonB dependent receptor NRZ28_09555 PF11143 Protein of unknown function (DUF2919) NRZ28_09560 PF01544 CorA-like Mg2+ transporter protein NRZ28_09570 PF01012 Electron transfer flavoprotein domain NRZ28_09575 PF00766 Electron transfer flavoprotein FAD-binding domain NRZ28_09575 PF01012 Electron transfer flavoprotein domain NRZ28_09580 PF00266 Aminotransferase class-V NRZ28_09585 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRZ28_09590 PF00793 DAHP synthetase I family NRZ28_09595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_09595 PF00672 HAMP domain NRZ28_09600 PF04055 Radical SAM superfamily NRZ28_09605 PF13742 OB-fold nucleic acid binding domain NRZ28_09605 PF02601 Exonuclease VII, large subunit NRZ28_09615 PF02472 Biopolymer transport protein ExbD/TolR NRZ28_09620 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_09630 PF02705 K+ potassium transporter NRZ28_09635 PF00478 IMP dehydrogenase / GMP reductase domain NRZ28_09635 PF00571 CBS domain NRZ28_09640 PF02540 NAD synthase NRZ28_09640 PF00958 GMP synthase C terminal domain NRZ28_09640 PF00117 Glutamine amidotransferase class-I NRZ28_09655 PF12833 Helix-turn-helix domain NRZ28_09655 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRZ28_09655 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRZ28_09655 PF02805 Metal binding domain of Ada NRZ28_09670 PF05724 Thiopurine S-methyltransferase (TPMT) NRZ28_09675 PF05193 Peptidase M16 inactive domain NRZ28_09675 PF00675 Insulinase (Peptidase family M16) NRZ28_09680 PF00300 Histidine phosphatase superfamily (branch 1) NRZ28_09690 PF00892 EamA-like transporter family NRZ28_09695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_09700 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NRZ28_09705 PF02559 CarD-like/TRCF domain NRZ28_09705 PF00270 DEAD/DEAH box helicase NRZ28_09705 PF00271 Helicase conserved C-terminal domain NRZ28_09705 PF03461 TRCF domain NRZ28_09705 PF17757 UvrB interaction domain NRZ28_09715 PF02687 FtsX-like permease family NRZ28_09715 PF12704 MacB-like periplasmic core domain NRZ28_09720 PF00005 ABC transporter NRZ28_09725 PF02687 FtsX-like permease family NRZ28_09725 PF12704 MacB-like periplasmic core domain NRZ28_09740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRZ28_09740 PF05698 Bacterial trigger factor protein (TF) C-terminus NRZ28_09740 PF05697 Bacterial trigger factor protein (TF) NRZ28_09745 PF00574 Clp protease NRZ28_09750 PF07724 AAA domain (Cdc48 subfamily) NRZ28_09750 PF06689 ClpX C4-type zinc finger NRZ28_09750 PF10431 C-terminal, D2-small domain, of ClpB protein NRZ28_09755 PF02190 ATP-dependent protease La (LON) substrate-binding domain NRZ28_09755 PF05362 Lon protease (S16) C-terminal proteolytic domain NRZ28_09755 PF00004 ATPase family associated with various cellular activities (AAA) NRZ28_09760 PF00216 Bacterial DNA-binding protein NRZ28_09765 PF13145 PPIC-type PPIASE domain NRZ28_09770 PF00005 ABC transporter NRZ28_09770 PF12848 ABC transporter NRZ28_09775 PF00474 Sodium:solute symporter family NRZ28_09780 PF04341 Protein of unknown function, DUF485 NRZ28_09795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRZ28_09795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRZ28_09795 PF00378 Enoyl-CoA hydratase/isomerase NRZ28_09835 PF01235 Sodium:alanine symporter family NRZ28_09845 PF06167 Glucose-regulated metallo-peptidase M90 NRZ28_09850 PF01184 GPR1/FUN34/yaaH family NRZ28_09865 PF00376 MerR family regulatory protein NRZ28_09865 PF09278 MerR, DNA binding NRZ28_09870 PF00682 HMGL-like NRZ28_09875 PF00289 Biotin carboxylase, N-terminal domain NRZ28_09875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRZ28_09875 PF02785 Biotin carboxylase C-terminal domain NRZ28_09875 PF00364 Biotin-requiring enzyme NRZ28_09880 PF00378 Enoyl-CoA hydratase/isomerase NRZ28_09885 PF01039 Carboxyl transferase domain NRZ28_09890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRZ28_09890 PF02770 Acyl-CoA dehydrogenase, middle domain NRZ28_09890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRZ28_09895 PF00171 Aldehyde dehydrogenase family NRZ28_09900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRZ28_09900 PF02770 Acyl-CoA dehydrogenase, middle domain NRZ28_09900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRZ28_09905 PF00378 Enoyl-CoA hydratase/isomerase NRZ28_09910 PF00378 Enoyl-CoA hydratase/isomerase NRZ28_09915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRZ28_09915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRZ28_09925 PF13520 Amino acid permease NRZ28_09930 PF01925 Sulfite exporter TauE/SafE NRZ28_09965 PF03466 LysR substrate binding domain NRZ28_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_09970 PF00232 Glycosyl hydrolase family 1 NRZ28_09975 PF00563 EAL domain NRZ28_09975 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_09975 PF03707 Bacterial signalling protein N terminal repeat NRZ28_09975 PF13188 PAS domain NRZ28_09985 PF01966 HD domain NRZ28_09995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_09995 PF03466 LysR substrate binding domain NRZ28_10005 PF00933 Glycosyl hydrolase family 3 N terminal domain NRZ28_10010 PF01261 Xylose isomerase-like TIM barrel NRZ28_10015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRZ28_10015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRZ28_10020 PF03466 LysR substrate binding domain NRZ28_10020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_10030 PF03279 Bacterial lipid A biosynthesis acyltransferase NRZ28_10035 PF03279 Bacterial lipid A biosynthesis acyltransferase NRZ28_10050 PF17151 Periplasmic sensor domain NRZ28_10050 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_10060 PF03104 DNA polymerase family B, exonuclease domain NRZ28_10060 PF00136 DNA polymerase family B NRZ28_10090 PF01554 MatE NRZ28_10095 PF06786 Uncharacterised protein family (UPF0253) NRZ28_10100 PF00677 Lumazine binding domain NRZ28_10110 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_10115 PF02222 ATP-grasp domain NRZ28_10115 PF01370 NAD dependent epimerase/dehydratase family NRZ28_10120 PF00892 EamA-like transporter family NRZ28_10125 PF02525 Flavodoxin-like fold NRZ28_10150 PF13509 S1 domain NRZ28_10150 PF17783 CvfB-like winged helix domain NRZ28_10160 PF04269 Protein of unknown function, DUF440 NRZ28_10170 PF00912 Transglycosylase NRZ28_10175 PF04269 Protein of unknown function, DUF440 NRZ28_10180 PF03776 Septum formation topological specificity factor MinE NRZ28_10185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NRZ28_10190 PF03775 Septum formation inhibitor MinC, C-terminal domain NRZ28_10190 PF05209 Septum formation inhibitor MinC, N-terminal domain NRZ28_10195 PF05166 YcgL domain NRZ28_10205 PF03313 Serine dehydratase alpha chain NRZ28_10205 PF03315 Serine dehydratase beta chain NRZ28_10210 PF03313 Serine dehydratase alpha chain NRZ28_10210 PF03315 Serine dehydratase beta chain NRZ28_10215 PF06865 Pyrimidine/purine nucleoside phosphorylase NRZ28_10220 PF00375 Sodium:dicarboxylate symporter family NRZ28_10225 PF00376 MerR family regulatory protein NRZ28_10225 PF09278 MerR, DNA binding NRZ28_10230 PF02803 Thiolase, C-terminal domain NRZ28_10230 PF00108 Thiolase, N-terminal domain NRZ28_10235 PF08668 HDOD domain NRZ28_10235 PF00563 EAL domain NRZ28_10240 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRZ28_10245 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRZ28_10255 PF04542 Sigma-70 region 2 NRZ28_10255 PF08281 Sigma-70, region 4 NRZ28_10280 PF01882 Protein of unknown function DUF58 NRZ28_10285 PF17863 AAA lid domain NRZ28_10285 PF07726 ATPase family associated with various cellular activities (AAA) NRZ28_10290 PF02803 Thiolase, C-terminal domain NRZ28_10290 PF00108 Thiolase, N-terminal domain NRZ28_10295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRZ28_10295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRZ28_10295 PF00378 Enoyl-CoA hydratase/isomerase NRZ28_10305 PF07152 YaeQ protein NRZ28_10315 PF13188 PAS domain NRZ28_10315 PF00158 Sigma-54 interaction domain NRZ28_10315 PF02954 Bacterial regulatory protein, Fis family NRZ28_10320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRZ28_10320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRZ28_10325 PF00291 Pyridoxal-phosphate dependent enzyme NRZ28_10330 PF07687 Peptidase dimerisation domain NRZ28_10330 PF01546 Peptidase family M20/M25/M40 NRZ28_10335 PF01979 Amidohydrolase family NRZ28_10340 PF00696 Amino acid kinase family NRZ28_10345 PF00892 EamA-like transporter family NRZ28_10350 PF02625 XdhC and CoxI family NRZ28_10350 PF13478 XdhC Rossmann domain NRZ28_10360 PF12804 MobA-like NTP transferase domain NRZ28_10365 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_10365 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRZ28_10370 PF01979 Amidohydrolase family NRZ28_10375 PF00941 FAD binding domain in molybdopterin dehydrogenase NRZ28_10380 PF01799 [2Fe-2S] binding domain NRZ28_10380 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRZ28_10380 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRZ28_10385 PF00860 Permease family NRZ28_10390 PF01979 Amidohydrolase family NRZ28_10395 PF00860 Permease family NRZ28_10400 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRZ28_10400 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRZ28_10405 PF03450 CO dehydrogenase flavoprotein C-terminal domain NRZ28_10405 PF00941 FAD binding domain in molybdopterin dehydrogenase NRZ28_10410 PF01799 [2Fe-2S] binding domain NRZ28_10410 PF00111 2Fe-2S iron-sulfur cluster binding domain NRZ28_10420 PF05433 Glycine zipper 2TM domain NRZ28_10430 PF03606 C4-dicarboxylate anaerobic carrier NRZ28_10435 PF00501 AMP-binding enzyme NRZ28_10435 PF13193 AMP-binding enzyme C-terminal domain NRZ28_10440 PF13280 WYL domain NRZ28_10440 PF08279 HTH domain NRZ28_10450 PF01502 Phosphoribosyl-AMP cyclohydrolase NRZ28_10450 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NRZ28_10455 PF00977 Histidine biosynthesis protein NRZ28_10460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_10460 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_10460 PF01627 Hpt domain NRZ28_10460 PF00072 Response regulator receiver domain NRZ28_10465 PF08448 PAS fold NRZ28_10465 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_10470 PF00072 Response regulator receiver domain NRZ28_10475 PF00977 Histidine biosynthesis protein NRZ28_10480 PF00117 Glutamine amidotransferase class-I NRZ28_10485 PF00475 Imidazoleglycerol-phosphate dehydratase NRZ28_10485 PF08645 Polynucleotide kinase 3 phosphatase NRZ28_10490 PF00155 Aminotransferase class I and II NRZ28_10495 PF00815 Histidinol dehydrogenase NRZ28_10500 PF08029 HisG, C-terminal domain NRZ28_10500 PF01634 ATP phosphoribosyltransferase NRZ28_10510 PF04851 Type III restriction enzyme, res subunit NRZ28_10510 PF13307 Helicase C-terminal domain NRZ28_10515 PF00814 Glycoprotease family NRZ28_10525 PF12697 Alpha/beta hydrolase family NRZ28_10525 PF08241 Methyltransferase domain NRZ28_10530 PF00501 AMP-binding enzyme NRZ28_10530 PF13193 AMP-binding enzyme C-terminal domain NRZ28_10535 PF00570 HRDC domain NRZ28_10535 PF01612 3'-5' exonuclease NRZ28_10540 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_10550 PF01207 Dihydrouridine synthase (Dus) NRZ28_10555 PF04304 Protein of unknown function (DUF454) NRZ28_10560 PF00156 Phosphoribosyl transferase domain NRZ28_10565 PF12169 DNA polymerase III subunits gamma and tau domain III NRZ28_10565 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NRZ28_10565 PF12170 DNA polymerase III tau subunit V interacting with alpha NRZ28_10570 PF02575 YbaB/EbfC DNA-binding family NRZ28_10580 PF00196 Bacterial regulatory proteins, luxR family NRZ28_10580 PF00072 Response regulator receiver domain NRZ28_10585 PF02272 DHHA1 domain NRZ28_10585 PF01743 Poly A polymerase head domain NRZ28_10585 PF00571 CBS domain NRZ28_10585 PF01368 DHH family NRZ28_10590 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NRZ28_10590 PF04408 Helicase associated domain (HA2) NRZ28_10590 PF11898 Domain of unknown function (DUF3418) NRZ28_10590 PF00270 DEAD/DEAH box helicase NRZ28_10590 PF00271 Helicase conserved C-terminal domain NRZ28_10600 PF01386 Ribosomal L25p family NRZ28_10605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRZ28_10605 PF01627 Hpt domain NRZ28_10605 PF00072 Response regulator receiver domain NRZ28_10605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_10605 PF00672 HAMP domain NRZ28_10605 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_10610 PF00072 Response regulator receiver domain NRZ28_10615 PF00753 Metallo-beta-lactamase superfamily NRZ28_10625 PF00586 AIR synthase related protein, N-terminal domain NRZ28_10625 PF02769 AIR synthase related protein, C-terminal domain NRZ28_10640 PF10672 S-adenosylmethionine-dependent methyltransferase NRZ28_10640 PF17785 PUA-like domain NRZ28_10645 PF12729 Four helix bundle sensory module for signal transduction NRZ28_10645 PF00672 HAMP domain NRZ28_10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_10650 PF00708 Acylphosphatase NRZ28_10655 PF02798 Glutathione S-transferase, N-terminal domain NRZ28_10655 PF00043 Glutathione S-transferase, C-terminal domain NRZ28_10660 PF08264 Anticodon-binding domain of tRNA NRZ28_10660 PF01588 Putative tRNA binding domain NRZ28_10660 PF09334 tRNA synthetases class I (M) NRZ28_10665 PF10609 NUBPL iron-transfer P-loop NTPase NRZ28_10670 PF00485 Phosphoribulokinase / Uridine kinase family NRZ28_10675 PF00692 dUTPase NRZ28_10680 PF01384 Phosphate transporter family NRZ28_10685 PF12111 Polyribonucleotide phosphorylase C terminal NRZ28_10685 PF10150 Ribonuclease E/G family NRZ28_10685 PF00575 S1 RNA binding domain NRZ28_10690 PF00849 RNA pseudouridylate synthase NRZ28_10690 PF01479 S4 domain NRZ28_10700 PF02545 Maf-like protein NRZ28_10705 PF07690 Major Facilitator Superfamily NRZ28_10710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_10710 PF03466 LysR substrate binding domain NRZ28_10720 PF02620 Large ribosomal RNA subunit accumulation protein YceD NRZ28_10725 PF01783 Ribosomal L32p protein family NRZ28_10730 PF02504 Fatty acid synthesis protein NRZ28_10735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRZ28_10735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRZ28_10740 PF00698 Acyl transferase domain NRZ28_10750 PF00550 Phosphopantetheine attachment site NRZ28_10755 PF00109 Beta-ketoacyl synthase, N-terminal domain NRZ28_10755 PF02801 Beta-ketoacyl synthase, C-terminal domain NRZ28_10760 PF01063 Amino-transferase class IV NRZ28_10765 PF02618 YceG-like family NRZ28_10770 PF02223 Thymidylate kinase NRZ28_10775 PF09115 DNA polymerase III, delta subunit, C terminal NRZ28_10780 PF01026 TatD related DNase NRZ28_10790 PF00589 Phage integrase family NRZ28_10800 PF01189 16S rRNA methyltransferase RsmB/F NRZ28_10800 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NRZ28_10800 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NRZ28_10805 PF02470 MlaD protein NRZ28_10810 PF04403 Paraquat-inducible protein A NRZ28_10825 PF00285 Citrate synthase, C-terminal domain NRZ28_10830 PF03972 MmgE/PrpD family NRZ28_10845 PF06974 Protein of unknown function (DUF1298) NRZ28_10845 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NRZ28_10870 PF00106 short chain dehydrogenase NRZ28_10880 PF07130 YebG protein NRZ28_10900 PF05707 Zonular occludens toxin (Zot) NRZ28_10905 PF10734 Protein of unknown function (DUF2523) NRZ28_10940 PF13654 AAA domain NRZ28_10940 PF05362 Lon protease (S16) C-terminal proteolytic domain NRZ28_10945 PF07977 FabA-like domain NRZ28_10950 PF04957 Ribosome modulation factor NRZ28_10960 PF16326 ABC transporter C-terminal domain NRZ28_10960 PF00005 ABC transporter NRZ28_10960 PF12848 ABC transporter NRZ28_10970 PF10672 S-adenosylmethionine-dependent methyltransferase NRZ28_10970 PF02926 THUMP domain NRZ28_10970 PF01170 Putative RNA methylase family UPF0020 NRZ28_10975 PF07126 Cell-division protein ZapC NRZ28_10980 PF01180 Dihydroorotate dehydrogenase NRZ28_10985 PF05088 Bacterial NAD-glutamate dehydrogenase NRZ28_10995 PF11940 Domain of unknown function (DUF3458) Ig-like fold NRZ28_10995 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NRZ28_10995 PF01433 Peptidase family M1 domain NRZ28_11000 PF11818 C-terminal domain of tail specific protease (DUF3340) NRZ28_11000 PF00595 PDZ domain NRZ28_11000 PF03572 Peptidase family S41 NRZ28_11000 PF17804 Tail specific protease N-terminal domain NRZ28_11005 PF04352 ProQ/FINO family NRZ28_11005 PF17516 ProQ C-terminal domain NRZ28_11010 PF13185 GAF domain NRZ28_11020 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRZ28_11035 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NRZ28_11035 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRZ28_11045 PF00403 Heavy-metal-associated domain NRZ28_11060 PF00027 Cyclic nucleotide-binding domain NRZ28_11060 PF13545 Crp-like helix-turn-helix domain NRZ28_11065 PF00582 Universal stress protein family NRZ28_11070 PF01171 PP-loop family NRZ28_11085 PF13417 Glutathione S-transferase, N-terminal domain NRZ28_11090 PF05025 RbsD / FucU transport protein family NRZ28_11095 PF00005 ABC transporter NRZ28_11100 PF02653 Branched-chain amino acid transport system / permease component NRZ28_11105 PF13407 Periplasmic binding protein domain NRZ28_11110 PF00294 pfkB family carbohydrate kinase NRZ28_11115 PF00356 Bacterial regulatory proteins, lacI family NRZ28_11120 PF03707 Bacterial signalling protein N terminal repeat NRZ28_11120 PF00563 EAL domain NRZ28_11120 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_11145 PF09456 RcsC Alpha-Beta-Loop (ABL) NRZ28_11145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_11145 PF00072 Response regulator receiver domain NRZ28_11145 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_11150 PF00216 Bacterial DNA-binding protein NRZ28_11155 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NRZ28_11155 PF01588 Putative tRNA binding domain NRZ28_11155 PF03147 Ferredoxin-fold anticodon binding domain NRZ28_11155 PF03484 tRNA synthetase B5 domain NRZ28_11155 PF03483 B3/4 domain NRZ28_11160 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NRZ28_11160 PF01409 tRNA synthetases class II core domain (F) NRZ28_11165 PF00453 Ribosomal protein L20 NRZ28_11170 PF01632 Ribosomal protein L35 NRZ28_11175 PF00707 Translation initiation factor IF-3, C-terminal domain NRZ28_11175 PF05198 Translation initiation factor IF-3, N-terminal domain NRZ28_11180 PF03129 Anticodon binding domain NRZ28_11180 PF02824 TGS domain NRZ28_11180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRZ28_11180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRZ28_11190 PF04055 Radical SAM superfamily NRZ28_11200 PF03989 DNA gyrase C-terminal domain, beta-propeller NRZ28_11200 PF00521 DNA gyrase/topoisomerase IV, subunit A NRZ28_11210 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_11215 PF03477 ATP cone domain NRZ28_11215 PF02867 Ribonucleotide reductase, barrel domain NRZ28_11215 PF00317 Ribonucleotide reductase, all-alpha domain NRZ28_11220 PF00268 Ribonucleotide reductase, small chain NRZ28_11225 PF00111 2Fe-2S iron-sulfur cluster binding domain NRZ28_11230 PF03562 MltA specific insert domain NRZ28_11230 PF06725 3D domain NRZ28_11235 PF06945 Protein of unknown function (DUF1289) NRZ28_11245 PF03613 PTS system mannose/fructose/sorbose family IID component NRZ28_11250 PF03609 PTS system sorbose-specific iic component NRZ28_11255 PF03830 PTS system sorbose subfamily IIB component NRZ28_11255 PF03610 PTS system fructose IIA component NRZ28_11270 PF00356 Bacterial regulatory proteins, lacI family NRZ28_11270 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRZ28_11275 PF06560 Glucose-6-phosphate isomerase (GPI) NRZ28_11280 PF02378 Phosphotransferase system, EIIC NRZ28_11280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRZ28_11285 PF00294 pfkB family carbohydrate kinase NRZ28_11290 PF00381 PTS HPr component phosphorylation site NRZ28_11290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRZ28_11295 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRZ28_11295 PF00356 Bacterial regulatory proteins, lacI family NRZ28_11300 PF03222 Tryptophan/tyrosine permease family NRZ28_11315 PF00270 DEAD/DEAH box helicase NRZ28_11315 PF00271 Helicase conserved C-terminal domain NRZ28_11325 PF01264 Chorismate synthase NRZ28_11330 PF05175 Methyltransferase small domain NRZ28_11335 PF01713 Smr domain NRZ28_11345 PF08448 PAS fold NRZ28_11345 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_11350 PF00300 Histidine phosphatase superfamily (branch 1) NRZ28_11365 PF00704 Glycosyl hydrolases family 18 NRZ28_11365 PF08329 Chitinase A, N-terminal domain NRZ28_11375 PF00574 Clp protease NRZ28_11385 PF03831 PhnA domain NRZ28_11385 PF08274 PhnA Zinc-Ribbon NRZ28_11395 PF02567 Phenazine biosynthesis-like protein NRZ28_11425 PF01327 Polypeptide deformylase NRZ28_11440 PF03330 Lytic transglycolase NRZ28_11440 PF05036 Sporulation related domain NRZ28_11445 PF04310 MukB N-terminal NRZ28_11445 PF16330 MukB hinge domain NRZ28_11450 PF04288 MukE-like family NRZ28_11455 PF17193 MukF C-terminal domain NRZ28_11455 PF17192 MukF middle domain NRZ28_11455 PF03882 MukF winged-helix domain NRZ28_11460 PF13847 Methyltransferase domain NRZ28_11465 PF02698 DUF218 domain NRZ28_11470 PF00121 Triosephosphate isomerase NRZ28_11475 PF00365 Phosphofructokinase NRZ28_11480 PF01546 Peptidase family M20/M25/M40 NRZ28_11480 PF07687 Peptidase dimerisation domain NRZ28_11485 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_11490 PF02789 Cytosol aminopeptidase family, N-terminal domain NRZ28_11490 PF00883 Cytosol aminopeptidase family, catalytic domain NRZ28_11510 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRZ28_11510 PF00128 Alpha amylase, catalytic domain NRZ28_11520 PF11398 Protein of unknown function (DUF2813) NRZ28_11530 PF12833 Helix-turn-helix domain NRZ28_11530 PF14525 AraC-binding-like domain NRZ28_11540 PF03466 LysR substrate binding domain NRZ28_11540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_11545 PF01925 Sulfite exporter TauE/SafE NRZ28_11550 PF03942 DTW domain NRZ28_11560 PF01820 D-ala D-ala ligase N-terminus NRZ28_11560 PF07478 D-ala D-ala ligase C-terminus NRZ28_11570 PF00255 Glutathione peroxidase NRZ28_11575 PF00270 DEAD/DEAH box helicase NRZ28_11575 PF00271 Helicase conserved C-terminal domain NRZ28_11580 PF13673 Acetyltransferase (GNAT) domain NRZ28_11590 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NRZ28_11600 PF01928 CYTH domain NRZ28_11615 PF00465 Iron-containing alcohol dehydrogenase NRZ28_11620 PF03992 Antibiotic biosynthesis monooxygenase NRZ28_11625 PF08543 Phosphomethylpyrimidine kinase NRZ28_11645 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NRZ28_11645 PF00561 alpha/beta hydrolase fold NRZ28_11650 PF01575 MaoC like domain NRZ28_11665 PF00664 ABC transporter transmembrane region NRZ28_11665 PF00005 ABC transporter NRZ28_11670 PF00664 ABC transporter transmembrane region NRZ28_11670 PF00005 ABC transporter NRZ28_11675 PF00672 HAMP domain NRZ28_11675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_11675 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_11675 PF01627 Hpt domain NRZ28_11675 PF00072 Response regulator receiver domain NRZ28_11675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRZ28_11680 PF00085 Thioredoxin NRZ28_11685 PF00939 Sodium:sulfate symporter transmembrane region NRZ28_11690 PF00343 Carbohydrate phosphorylase NRZ28_11710 PF00425 chorismate binding enzyme NRZ28_11710 PF04715 Anthranilate synthase component I, N terminal region NRZ28_11715 PF00293 NUDIX domain NRZ28_11720 PF03222 Tryptophan/tyrosine permease family NRZ28_11725 PF00375 Sodium:dicarboxylate symporter family NRZ28_11730 PF00570 HRDC domain NRZ28_11730 PF00271 Helicase conserved C-terminal domain NRZ28_11730 PF09382 RQC domain NRZ28_11730 PF16124 RecQ zinc-binding NRZ28_11730 PF00270 DEAD/DEAH box helicase NRZ28_11735 PF06798 PrkA serine protein kinase C-terminal domain NRZ28_11735 PF08298 PrkA AAA domain NRZ28_11740 PF04285 Protein of unknown function (DUF444) NRZ28_11745 PF04293 SpoVR like protein NRZ28_11750 PF00392 Bacterial regulatory proteins, gntR family NRZ28_11750 PF07840 FadR C-terminal domain NRZ28_11755 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NRZ28_11760 PF02600 Disulfide bond formation protein DsbB NRZ28_11765 PF09335 SNARE associated Golgi protein NRZ28_11775 PF00271 Helicase conserved C-terminal domain NRZ28_11775 PF17757 UvrB interaction domain NRZ28_11775 PF12344 Ultra-violet resistance protein B NRZ28_11775 PF02151 UvrB/uvrC motif NRZ28_11775 PF04851 Type III restriction enzyme, res subunit NRZ28_11785 PF06826 Predicted Permease Membrane Region NRZ28_11785 PF02080 TrkA-C domain NRZ28_11790 PF01464 Transglycosylase SLT domain NRZ28_11790 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_11805 PF01970 Tripartite tricarboxylate transporter TctA family NRZ28_11815 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRZ28_11815 PF17203 Single cache domain 3 NRZ28_11815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_11815 PF00989 PAS fold NRZ28_11820 PF00480 ROK family NRZ28_11820 PF01047 MarR family NRZ28_11825 PF00672 HAMP domain NRZ28_11825 PF17200 Single Cache domain 2 NRZ28_11825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_11830 PF02810 SEC-C motif NRZ28_11835 PF01266 FAD dependent oxidoreductase NRZ28_11835 PF04324 BFD-like [2Fe-2S] binding domain NRZ28_11840 PF00890 FAD binding domain NRZ28_11845 PF13183 4Fe-4S dicluster domain NRZ28_11845 PF02754 Cysteine-rich domain NRZ28_11850 PF02335 Cytochrome c552 NRZ28_11855 PF13435 Cytochrome c554 and c-prime NRZ28_11855 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRZ28_11860 PF13247 4Fe-4S dicluster domain NRZ28_11860 PF00037 4Fe-4S binding domain NRZ28_11865 PF03916 Polysulphide reductase, NrfD NRZ28_11870 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRZ28_11870 PF01578 Cytochrome C assembly protein NRZ28_11875 PF08534 Redoxin NRZ28_11880 PF03918 Cytochrome C biogenesis protein NRZ28_11885 PF00293 NUDIX domain NRZ28_11890 PF00768 D-alanyl-D-alanine carboxypeptidase NRZ28_11895 PF00975 Thioesterase domain NRZ28_11895 PF00550 Phosphopantetheine attachment site NRZ28_11895 PF00501 AMP-binding enzyme NRZ28_11895 PF13193 AMP-binding enzyme C-terminal domain NRZ28_11895 PF00668 Condensation domain NRZ28_11900 PF00550 Phosphopantetheine attachment site NRZ28_11900 PF00668 Condensation domain NRZ28_11900 PF13193 AMP-binding enzyme C-terminal domain NRZ28_11900 PF07993 Male sterility protein NRZ28_11900 PF00501 AMP-binding enzyme NRZ28_11910 PF00550 Phosphopantetheine attachment site NRZ28_11910 PF00501 AMP-binding enzyme NRZ28_11910 PF13193 AMP-binding enzyme C-terminal domain NRZ28_11910 PF00668 Condensation domain NRZ28_11910 PF00975 Thioesterase domain NRZ28_11915 PF00550 Phosphopantetheine attachment site NRZ28_11915 PF00857 Isochorismatase family NRZ28_11920 PF13193 AMP-binding enzyme C-terminal domain NRZ28_11920 PF00501 AMP-binding enzyme NRZ28_11925 PF00425 chorismate binding enzyme NRZ28_11935 PF07273 Protein of unknown function (DUF1439) NRZ28_11945 PF00483 Nucleotidyl transferase NRZ28_11950 PF00563 EAL domain NRZ28_11950 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_11950 PF03707 Bacterial signalling protein N terminal repeat NRZ28_11965 PF00294 pfkB family carbohydrate kinase NRZ28_11975 PF00762 Ferrochelatase NRZ28_11980 PF05191 Adenylate kinase, active site lid NRZ28_11985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_11985 PF00183 Hsp90 protein NRZ28_11990 PF13662 Toprim domain NRZ28_11990 PF02132 RecR protein NRZ28_11995 PF02634 FdhD/NarQ family NRZ28_12000 PF01590 GAF domain NRZ28_12000 PF02954 Bacterial regulatory protein, Fis family NRZ28_12000 PF00158 Sigma-54 interaction domain NRZ28_12015 PF13247 4Fe-4S dicluster domain NRZ28_12015 PF12800 4Fe-4S binding domain NRZ28_12025 PF02705 K+ potassium transporter NRZ28_12035 PF07690 Major Facilitator Superfamily NRZ28_12040 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_12045 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRZ28_12045 PF08240 Alcohol dehydrogenase GroES-like domain NRZ28_12050 PF00202 Aminotransferase class-III NRZ28_12055 PF00037 4Fe-4S binding domain NRZ28_12055 PF12798 4Fe-4S binding domain NRZ28_12060 PF00361 Proton-conducting membrane transporter NRZ28_12065 PF00146 NADH dehydrogenase NRZ28_12070 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRZ28_12070 PF00374 Nickel-dependent hydrogenase NRZ28_12070 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRZ28_12075 PF12838 4Fe-4S dicluster domain NRZ28_12080 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRZ28_12085 PF07450 Formate hydrogenlyase maturation protein HycH NRZ28_12090 PF01750 Hydrogenase maturation protease NRZ28_12100 PF12390 Selenocysteine synthase N terminal NRZ28_12100 PF03841 L-seryl-tRNA selenium transferase NRZ28_12105 PF09106 Elongation factor SelB, winged helix NRZ28_12105 PF09105 Elongation factor SelB, winged helix NRZ28_12105 PF03144 Elongation factor Tu domain 2 NRZ28_12105 PF00009 Elongation factor Tu GTP binding domain NRZ28_12105 PF09107 Elongation factor SelB, winged helix NRZ28_12110 PF00708 Acylphosphatase NRZ28_12110 PF01300 Telomere recombination NRZ28_12110 PF17788 HypF Kae1-like domain NRZ28_12110 PF07503 HypF finger NRZ28_12115 PF01455 HupF/HypC family NRZ28_12120 PF01924 Hydrogenase formation hypA family NRZ28_12125 PF00586 AIR synthase related protein, N-terminal domain NRZ28_12125 PF02769 AIR synthase related protein, C-terminal domain NRZ28_12130 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRZ28_12140 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRZ28_12145 PF00005 ABC transporter NRZ28_12150 PF00005 ABC transporter NRZ28_12150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_12155 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_12155 PF12911 N-terminal TM domain of oligopeptide transport permease C NRZ28_12160 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_12165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_12170 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE NRZ28_12175 PF01750 Hydrogenase maturation protease NRZ28_12180 PF00374 Nickel-dependent hydrogenase NRZ28_12185 PF03916 Polysulphide reductase, NrfD NRZ28_12190 PF13247 4Fe-4S dicluster domain NRZ28_12195 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRZ28_12195 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal NRZ28_12200 PF00072 Response regulator receiver domain NRZ28_12210 PF09078 CheY binding NRZ28_12210 PF01584 CheW-like domain NRZ28_12210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_12210 PF01627 Hpt domain NRZ28_12210 PF02895 Signal transducing histidine kinase, homodimeric domain NRZ28_12215 PF00672 HAMP domain NRZ28_12215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_12215 PF17202 Single cache domain 3 NRZ28_12220 PF01584 CheW-like domain NRZ28_12225 PF01739 CheR methyltransferase, SAM binding domain NRZ28_12225 PF03705 CheR methyltransferase, all-alpha domain NRZ28_12230 PF01339 CheB methylesterase NRZ28_12230 PF00072 Response regulator receiver domain NRZ28_12235 PF03707 Bacterial signalling protein N terminal repeat NRZ28_12235 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_12235 PF00563 EAL domain NRZ28_12240 PF12729 Four helix bundle sensory module for signal transduction NRZ28_12240 PF00672 HAMP domain NRZ28_12240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_12245 PF01168 Alanine racemase, N-terminal domain NRZ28_12245 PF00842 Alanine racemase, C-terminal domain NRZ28_12260 PF01740 STAS domain NRZ28_12260 PF00916 Sulfate permease family NRZ28_12290 PF03239 Iron permease FTR1 family NRZ28_12295 PF01593 Flavin containing amine oxidoreductase NRZ28_12310 PF07690 Major Facilitator Superfamily NRZ28_12320 PF00005 ABC transporter NRZ28_12325 PF02687 FtsX-like permease family NRZ28_12325 PF12704 MacB-like periplasmic core domain NRZ28_12345 PF02913 FAD linked oxidases, C-terminal domain NRZ28_12345 PF01565 FAD binding domain NRZ28_12350 PF02589 LUD domain NRZ28_12355 PF11870 Domain of unknown function (DUF3390) NRZ28_12355 PF02589 LUD domain NRZ28_12355 PF13183 4Fe-4S dicluster domain NRZ28_12360 PF02754 Cysteine-rich domain NRZ28_12365 PF02652 L-lactate permease NRZ28_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_12370 PF03466 LysR substrate binding domain NRZ28_12380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRZ28_12385 PF00561 alpha/beta hydrolase fold NRZ28_12405 PF01625 Peptide methionine sulfoxide reductase NRZ28_12410 PF00696 Amino acid kinase family NRZ28_12410 PF00583 Acetyltransferase (GNAT) family NRZ28_12415 PF00696 Amino acid kinase family NRZ28_12415 PF01842 ACT domain NRZ28_12425 PF00884 Sulfatase NRZ28_12430 PF17676 LD-carboxypeptidase C-terminal domain NRZ28_12430 PF02016 LD-carboxypeptidase N-terminal domain NRZ28_12435 PF01734 Patatin-like phospholipase NRZ28_12445 PF01906 Putative heavy-metal-binding NRZ28_12465 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_12470 PF05728 Uncharacterised protein family (UPF0227) NRZ28_12475 PF00860 Permease family NRZ28_12480 PF01432 Peptidase family M3 NRZ28_12480 PF08439 Oligopeptidase F NRZ28_12485 PF01432 Peptidase family M3 NRZ28_12485 PF08439 Oligopeptidase F NRZ28_12490 PF05661 Protein of unknown function (DUF808) NRZ28_12500 PF07549 SecD/SecF GG Motif NRZ28_12500 PF02355 Protein export membrane protein NRZ28_12505 PF02355 Protein export membrane protein NRZ28_12505 PF13721 SecD export protein N-terminal TM region NRZ28_12505 PF07549 SecD/SecF GG Motif NRZ28_12540 PF01230 HIT domain NRZ28_12545 PF00672 HAMP domain NRZ28_12545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_12555 PF01979 Amidohydrolase family NRZ28_12570 PF00375 Sodium:dicarboxylate symporter family NRZ28_12580 PF01168 Alanine racemase, N-terminal domain NRZ28_12580 PF00842 Alanine racemase, C-terminal domain NRZ28_12585 PF03741 Integral membrane protein TerC family NRZ28_12590 PF00005 ABC transporter NRZ28_12590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_12600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NRZ28_12600 PF00005 ABC transporter NRZ28_12605 PF12911 N-terminal TM domain of oligopeptide transport permease C NRZ28_12605 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_12610 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_12615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_12620 PF01914 MarC family integral membrane protein NRZ28_12630 PF00465 Iron-containing alcohol dehydrogenase NRZ28_12630 PF00171 Aldehyde dehydrogenase family NRZ28_12635 PF01966 HD domain NRZ28_12640 PF07694 5TMR of 5TMR-LYT NRZ28_12640 PF06580 Histidine kinase NRZ28_12645 PF04397 LytTr DNA-binding domain NRZ28_12645 PF00072 Response regulator receiver domain NRZ28_12650 PF02554 Carbon starvation protein CstA NRZ28_12655 PF11742 Protein of unknown function (DUF3302) NRZ28_12660 PF00529 HlyD membrane-fusion protein of T1SS NRZ28_12660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_12665 PF00271 Helicase conserved C-terminal domain NRZ28_12665 PF04851 Type III restriction enzyme, res subunit NRZ28_12670 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NRZ28_12675 PF00462 Glutaredoxin NRZ28_12685 PF00155 Aminotransferase class I and II NRZ28_12690 PF03606 C4-dicarboxylate anaerobic carrier NRZ28_12695 PF07055 Enoyl reductase FAD binding domain NRZ28_12695 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRZ28_12695 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRZ28_12705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_12705 PF08447 PAS fold NRZ28_12705 PF13426 PAS domain NRZ28_12715 PF00892 EamA-like transporter family NRZ28_12720 PF02508 Rnf-Nqr subunit, membrane protein NRZ28_12725 PF04060 Putative Fe-S cluster NRZ28_12730 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRZ28_12730 PF12838 4Fe-4S dicluster domain NRZ28_12730 PF13375 RnfC Barrel sandwich hybrid domain NRZ28_12730 PF10531 SLBB domain NRZ28_12735 PF03116 NQR2, RnfD, RnfE family NRZ28_12740 PF04205 FMN-binding domain NRZ28_12745 PF02508 Rnf-Nqr subunit, membrane protein NRZ28_12750 PF00633 Helix-hairpin-helix motif NRZ28_12750 PF10576 Iron-sulfur binding domain of endonuclease III NRZ28_12750 PF00730 HhH-GPD superfamily base excision DNA repair protein NRZ28_12755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRZ28_12760 PF18393 MotY N-terminal domain NRZ28_12760 PF00691 OmpA family NRZ28_12765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_12765 PF12729 Four helix bundle sensory module for signal transduction NRZ28_12765 PF00672 HAMP domain NRZ28_12770 PF00929 Exonuclease NRZ28_12775 PF03553 Na+/H+ antiporter family NRZ28_12775 PF13726 Na+-H+ antiporter family NRZ28_12780 PF03880 DbpA RNA binding domain NRZ28_12780 PF00271 Helicase conserved C-terminal domain NRZ28_12780 PF00270 DEAD/DEAH box helicase NRZ28_12785 PF03061 Thioesterase superfamily NRZ28_12795 PF02913 FAD linked oxidases, C-terminal domain NRZ28_12795 PF01565 FAD binding domain NRZ28_12795 PF13183 4Fe-4S dicluster domain NRZ28_12805 PF03471 Transporter associated domain NRZ28_12805 PF03741 Integral membrane protein TerC family NRZ28_12810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRZ28_12815 PF00962 Adenosine/AMP deaminase NRZ28_12820 PF13344 Haloacid dehalogenase-like hydrolase NRZ28_12825 PF02254 TrkA-N domain NRZ28_12825 PF00999 Sodium/hydrogen exchanger family NRZ28_12835 PF13537 Glutamine amidotransferase domain NRZ28_12835 PF00733 Asparagine synthase NRZ28_12845 PF14497 Glutathione S-transferase, C-terminal domain NRZ28_12845 PF02798 Glutathione S-transferase, N-terminal domain NRZ28_12855 PF04209 homogentisate 1,2-dioxygenase NRZ28_12860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRZ28_12870 PF00849 RNA pseudouridylate synthase NRZ28_12875 PF00563 EAL domain NRZ28_12875 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_12875 PF13426 PAS domain NRZ28_12880 PF08447 PAS fold NRZ28_12880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_12890 PF03706 Lysylphosphatidylglycerol synthase TM region NRZ28_12890 PF09924 Uncharacterised conserved protein (DUF2156) NRZ28_12895 PF08019 Phosphoethanolamine transferase EptA/EptB NRZ28_12895 PF00884 Sulfatase NRZ28_12910 PF01027 Inhibitor of apoptosis-promoting Bax1 NRZ28_12915 PF12805 FUSC-like inner membrane protein yccS NRZ28_12920 PF04358 DsrC like protein NRZ28_12925 PF05036 Sporulation related domain NRZ28_12930 PF02875 Mur ligase family, glutamate ligase domain NRZ28_12930 PF08245 Mur ligase middle domain NRZ28_12935 PF01039 Carboxyl transferase domain NRZ28_12935 PF17848 Acetyl-coA carboxylase zinc finger domain NRZ28_12940 PF01416 tRNA pseudouridine synthase NRZ28_12950 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRZ28_12950 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRZ28_12955 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRZ28_12955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRZ28_12955 PF11890 Domain of unknown function (DUF3410) NRZ28_12960 PF01569 PAP2 superfamily NRZ28_12965 PF03180 NLPA lipoprotein NRZ28_12975 PF01483 Proprotein convertase P-domain NRZ28_12975 PF00082 Subtilase family NRZ28_12985 PF14310 Fibronectin type III-like domain NRZ28_12985 PF00933 Glycosyl hydrolase family 3 N terminal domain NRZ28_12985 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRZ28_12995 PF00391 PEP-utilising enzyme, mobile domain NRZ28_12995 PF02896 PEP-utilising enzyme, TIM barrel domain NRZ28_12995 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRZ28_13000 PF03618 Kinase/pyrophosphorylase NRZ28_13010 PF00324 Amino acid permease NRZ28_13080 PF03412 Peptidase C39 family NRZ28_13080 PF00664 ABC transporter transmembrane region NRZ28_13080 PF00005 ABC transporter NRZ28_13085 PF04055 Radical SAM superfamily NRZ28_13085 PF16199 Radical_SAM C-terminal domain NRZ28_13090 PF00310 Glutamine amidotransferases class-II NRZ28_13090 PF04898 Glutamate synthase central domain NRZ28_13090 PF01645 Conserved region in glutamate synthase NRZ28_13090 PF01493 GXGXG motif NRZ28_13095 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRZ28_13095 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_13100 PF00005 ABC transporter NRZ28_13105 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_13110 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_13125 PF09278 MerR, DNA binding NRZ28_13125 PF00376 MerR family regulatory protein NRZ28_13140 PF14521 Lysine-specific metallo-endopeptidase NRZ28_13150 PF00271 Helicase conserved C-terminal domain NRZ28_13150 PF00270 DEAD/DEAH box helicase NRZ28_13155 PF13302 Acetyltransferase (GNAT) domain NRZ28_13185 PF07759 Protein of unknown function (DUF1615) NRZ28_13190 PF00682 HMGL-like NRZ28_13190 PF08502 LeuA allosteric (dimerisation) domain NRZ28_13195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRZ28_13195 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NRZ28_13195 PF02142 MGS-like domain NRZ28_13200 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NRZ28_13200 PF00117 Glutamine amidotransferase class-I NRZ28_13205 PF05173 Dihydrodipicolinate reductase, C-terminus NRZ28_13205 PF01113 Dihydrodipicolinate reductase, N-terminus NRZ28_13215 PF01812 5-formyltetrahydrofolate cyclo-ligase family NRZ28_13220 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NRZ28_13225 PF01842 ACT domain NRZ28_13225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRZ28_13225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRZ28_13230 PF01219 Prokaryotic diacylglycerol kinase NRZ28_13235 PF00793 DAHP synthetase I family NRZ28_13240 PF00005 ABC transporter NRZ28_13245 PF01032 FecCD transport family NRZ28_13250 PF01627 Hpt domain NRZ28_13250 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_13250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_13250 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_13250 PF00989 PAS fold NRZ28_13250 PF00072 Response regulator receiver domain NRZ28_13260 PF00437 Type II/IV secretion system protein NRZ28_13265 PF00483 Nucleotidyl transferase NRZ28_13280 PF07664 Ferrous iron transport protein B C terminus NRZ28_13280 PF02421 Ferrous iron transport protein B NRZ28_13280 PF07670 Nucleoside recognition NRZ28_13290 PF01253 Translation initiation factor SUI1 NRZ28_13295 PF01169 Uncharacterized protein family UPF0016 NRZ28_13325 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_13325 PF13185 GAF domain NRZ28_13345 PF01406 tRNA synthetases class I (C) catalytic domain NRZ28_13345 PF09190 DALR domain NRZ28_13350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRZ28_13360 PF00149 Calcineurin-like phosphoesterase NRZ28_13365 PF03916 Polysulphide reductase, NrfD NRZ28_13370 PF00037 4Fe-4S binding domain NRZ28_13370 PF13247 4Fe-4S dicluster domain NRZ28_13375 PF13435 Cytochrome c554 and c-prime NRZ28_13375 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRZ28_13390 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) NRZ28_13395 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB NRZ28_13400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_13400 PF00672 HAMP domain NRZ28_13405 PF13426 PAS domain NRZ28_13405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_13405 PF08447 PAS fold NRZ28_13425 PF01066 CDP-alcohol phosphatidyltransferase NRZ28_13430 PF02151 UvrB/uvrC motif NRZ28_13430 PF08459 UvrC Helix-hairpin-helix N-terminal NRZ28_13430 PF01541 GIY-YIG catalytic domain NRZ28_13435 PF00072 Response regulator receiver domain NRZ28_13435 PF00196 Bacterial regulatory proteins, luxR family NRZ28_13440 PF02348 Cytidylyltransferase NRZ28_13445 PF03966 Trm112p-like protein NRZ28_13450 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NRZ28_13455 PF00005 ABC transporter NRZ28_13455 PF00664 ABC transporter transmembrane region NRZ28_13460 PF03772 Competence protein NRZ28_13460 PF00753 Metallo-beta-lactamase superfamily NRZ28_13475 PF05872 Bacterial protein of unknown function (DUF853) NRZ28_13480 PF00155 Aminotransferase class I and II NRZ28_13490 PF13609 Gram-negative porin NRZ28_13495 PF13307 Helicase C-terminal domain NRZ28_13495 PF06733 DEAD_2 NRZ28_13505 PF00850 Histone deacetylase domain NRZ28_13510 PF07690 Major Facilitator Superfamily NRZ28_13515 PF01926 50S ribosome-binding GTPase NRZ28_13520 PF00245 Alkaline phosphatase NRZ28_13525 PF00245 Alkaline phosphatase NRZ28_13540 PF14760 Rnk N-terminus NRZ28_13540 PF01272 Transcription elongation factor, GreA/GreB, C-term NRZ28_13545 PF00196 Bacterial regulatory proteins, luxR family NRZ28_13545 PF00072 Response regulator receiver domain NRZ28_13550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_13550 PF05231 MASE1 NRZ28_13550 PF07730 Histidine kinase NRZ28_13555 PF07690 Major Facilitator Superfamily NRZ28_13560 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_13565 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_13570 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_13575 PF00005 ABC transporter NRZ28_13590 PF04116 Fatty acid hydroxylase superfamily NRZ28_13595 PF13520 Amino acid permease NRZ28_13600 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRZ28_13600 PF02310 B12 binding domain NRZ28_13600 PF00809 Pterin binding enzyme NRZ28_13600 PF02607 B12 binding domain NRZ28_13600 PF02574 Homocysteine S-methyltransferase NRZ28_13610 PF00571 CBS domain NRZ28_13610 PF01595 Cyclin M transmembrane N-terminal domain NRZ28_13610 PF03471 Transporter associated domain NRZ28_13615 PF01895 PhoU domain NRZ28_13620 PF00005 ABC transporter NRZ28_13625 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_13630 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_13635 PF14437 MafB19-like deaminase NRZ28_13650 PF01274 Malate synthase NRZ28_13655 PF00463 Isocitrate lyase family NRZ28_13660 PF00308 Bacterial dnaA protein NRZ28_13675 PF00586 AIR synthase related protein, N-terminal domain NRZ28_13675 PF02769 AIR synthase related protein, C-terminal domain NRZ28_13680 PF00551 Formyl transferase NRZ28_13685 PF01784 NIF3 (NGG1p interacting factor 3) NRZ28_13690 PF00158 Sigma-54 interaction domain NRZ28_13690 PF02954 Bacterial regulatory protein, Fis family NRZ28_13690 PF00072 Response regulator receiver domain NRZ28_13695 PF13188 PAS domain NRZ28_13695 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_13695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_13700 PF02954 Bacterial regulatory protein, Fis family NRZ28_13700 PF06490 Flagellar regulatory protein FleQ NRZ28_13700 PF00158 Sigma-54 interaction domain NRZ28_13710 PF01842 ACT domain NRZ28_13715 PF02503 Polyphosphate kinase middle domain NRZ28_13715 PF13090 Polyphosphate kinase C-terminal domain 2 NRZ28_13715 PF17941 Polyphosphate kinase C-terminal domain 1 NRZ28_13715 PF13089 Polyphosphate kinase N-terminal domain NRZ28_13720 PF02541 Ppx/GppA phosphatase family NRZ28_13725 PF00571 CBS domain NRZ28_13725 PF03448 MgtE intracellular N domain NRZ28_13725 PF01769 Divalent cation transporter NRZ28_13730 PF00669 Bacterial flagellin N-terminal helical region NRZ28_13735 PF00460 Flagella basal body rod protein NRZ28_13735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRZ28_13740 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NRZ28_13740 PF10135 Rod binding protein NRZ28_13745 PF02119 Flagellar P-ring protein NRZ28_13750 PF02107 Flagellar L-ring protein NRZ28_13755 PF00460 Flagella basal body rod protein NRZ28_13755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRZ28_13760 PF00460 Flagella basal body rod protein NRZ28_13760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRZ28_13765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRZ28_13765 PF00460 Flagella basal body rod protein NRZ28_13765 PF07559 Flagellar basal body protein FlaE NRZ28_13775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRZ28_13775 PF00460 Flagella basal body rod protein NRZ28_13780 PF00460 Flagella basal body rod protein NRZ28_13785 PF01739 CheR methyltransferase, SAM binding domain NRZ28_13785 PF03705 CheR methyltransferase, all-alpha domain NRZ28_13790 PF01584 CheW-like domain NRZ28_13790 PF00072 Response regulator receiver domain NRZ28_13795 PF13144 Chaperone for flagella basal body P-ring formation NRZ28_13810 PF12850 Calcineurin-like phosphoesterase superfamily domain NRZ28_13815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_13825 PF00849 RNA pseudouridylate synthase NRZ28_13825 PF01479 S4 domain NRZ28_13830 PF11871 Domain of unknown function (DUF3391) NRZ28_13830 PF01966 HD domain NRZ28_13840 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRZ28_13845 PF04055 Radical SAM superfamily NRZ28_13850 PF01228 Glycine radical NRZ28_13850 PF02901 Pyruvate formate lyase-like NRZ28_13855 PF00455 DeoR C terminal sensor domain NRZ28_13855 PF08220 DeoR-like helix-turn-helix domain NRZ28_13860 PF00892 EamA-like transporter family NRZ28_13865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_13890 PF00313 'Cold-shock' DNA-binding domain NRZ28_13895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRZ28_13895 PF00364 Biotin-requiring enzyme NRZ28_13895 PF02817 e3 binding domain NRZ28_13900 PF02779 Transketolase, pyrimidine binding domain NRZ28_13900 PF02780 Transketolase, C-terminal domain NRZ28_13905 PF00676 Dehydrogenase E1 component NRZ28_13910 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NRZ28_13920 PF05472 DNA replication terminus site-binding protein (Ter protein) NRZ28_13925 PF00271 Helicase conserved C-terminal domain NRZ28_13925 PF00176 SNF2 family N-terminal domain NRZ28_13925 PF04434 SWIM zinc finger NRZ28_13930 PF04337 Protein of unknown function, DUF480 NRZ28_13940 PF06082 Exopolysaccharide biosynthesis protein YbjH NRZ28_13945 PF06251 Capsule biosynthesis GfcC NRZ28_13950 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF NRZ28_13960 PF13614 AAA domain NRZ28_13960 PF13807 G-rich domain on putative tyrosine kinase NRZ28_13960 PF02706 Chain length determinant protein NRZ28_13965 PF01451 Low molecular weight phosphotyrosine protein phosphatase NRZ28_13970 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NRZ28_13970 PF10531 SLBB domain NRZ28_13970 PF02563 Polysaccharide biosynthesis/export protein NRZ28_13990 PF00535 Glycosyl transferase family 2 NRZ28_14020 PF00953 Glycosyl transferase family 4 NRZ28_14030 PF00884 Sulfatase NRZ28_14030 PF08019 Phosphoethanolamine transferase EptA/EptB NRZ28_14035 PF01709 Transcriptional regulator NRZ28_14040 PF02938 GAD domain NRZ28_14040 PF00152 tRNA synthetases class II (D, K and N) NRZ28_14040 PF01336 OB-fold nucleic acid binding domain NRZ28_14045 PF01904 Protein of unknown function DUF72 NRZ28_14050 PF13649 Methyltransferase domain NRZ28_14055 PF08003 Protein of unknown function (DUF1698) NRZ28_14075 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRZ28_14075 PF00578 AhpC/TSA family NRZ28_14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_14080 PF03466 LysR substrate binding domain NRZ28_14085 PF07968 Leukocidin/Hemolysin toxin family NRZ28_14085 PF12563 Hemolytic toxin N terminal NRZ28_14090 PF00877 NlpC/P60 family NRZ28_14100 PF00171 Aldehyde dehydrogenase family NRZ28_14105 PF08359 YsiA-like protein, C-terminal region NRZ28_14105 PF00440 Bacterial regulatory proteins, tetR family NRZ28_14115 PF00465 Iron-containing alcohol dehydrogenase NRZ28_14125 PF00291 Pyridoxal-phosphate dependent enzyme NRZ28_14145 PF01554 MatE NRZ28_14170 PF10371 Domain of unknown function NRZ28_14170 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NRZ28_14170 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NRZ28_14170 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NRZ28_14170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRZ28_14175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRZ28_14175 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRZ28_14175 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRZ28_14180 PF00111 2Fe-2S iron-sulfur cluster binding domain NRZ28_14180 PF03473 MOSC domain NRZ28_14180 PF03476 MOSC N-terminal beta barrel domain NRZ28_14180 PF00111 2Fe-2S iron-sulfur cluster binding domain NRZ28_14180 PF03473 MOSC domain NRZ28_14180 PF03476 MOSC N-terminal beta barrel domain NRZ28_14185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_14185 PF13426 PAS domain NRZ28_14185 PF08447 PAS fold NRZ28_14190 PF01435 Peptidase family M48 NRZ28_14200 PF12697 Alpha/beta hydrolase family NRZ28_14200 PF08241 Methyltransferase domain NRZ28_14205 PF00155 Aminotransferase class I and II NRZ28_14210 PF04055 Radical SAM superfamily NRZ28_14210 PF06968 Biotin and Thiamin Synthesis associated domain NRZ28_14215 PF00202 Aminotransferase class-III NRZ28_14230 PF00152 tRNA synthetases class II (D, K and N) NRZ28_14230 PF01336 OB-fold nucleic acid binding domain NRZ28_14235 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRZ28_14245 PF01546 Peptidase family M20/M25/M40 NRZ28_14245 PF07687 Peptidase dimerisation domain NRZ28_14250 PF03606 C4-dicarboxylate anaerobic carrier NRZ28_14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_14260 PF03466 LysR substrate binding domain NRZ28_14265 PF03960 ArsC family NRZ28_14270 PF07687 Peptidase dimerisation domain NRZ28_14270 PF01546 Peptidase family M20/M25/M40 NRZ28_14275 PF02557 D-alanyl-D-alanine carboxypeptidase NRZ28_14285 PF03471 Transporter associated domain NRZ28_14285 PF00999 Sodium/hydrogen exchanger family NRZ28_14285 PF02080 TrkA-C domain NRZ28_14295 PF02080 TrkA-C domain NRZ28_14295 PF00999 Sodium/hydrogen exchanger family NRZ28_14295 PF03471 Transporter associated domain NRZ28_14305 PF01810 LysE type translocator NRZ28_14310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_14310 PF00672 HAMP domain NRZ28_14315 PF07509 Protein of unknown function (DUF1523) NRZ28_14330 PF01156 Inosine-uridine preferring nucleoside hydrolase NRZ28_14335 PF00849 RNA pseudouridylate synthase NRZ28_14340 PF01048 Phosphorylase superfamily NRZ28_14345 PF00465 Iron-containing alcohol dehydrogenase NRZ28_14380 PF00437 Type II/IV secretion system protein NRZ28_14395 PF13629 Pilus formation protein N terminal region NRZ28_14395 PF00263 Bacterial type II and III secretion system protein NRZ28_14395 PF04972 BON domain NRZ28_14425 PF04355 SmpA / OmlA family NRZ28_14430 PF13460 NAD(P)H-binding NRZ28_14435 PF03658 RnfH family Ubiquitin NRZ28_14440 PF03364 Polyketide cyclase / dehydrase and lipid transport NRZ28_14445 PF01668 SmpB protein NRZ28_14455 PF00271 Helicase conserved C-terminal domain NRZ28_14455 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NRZ28_14455 PF04851 Type III restriction enzyme, res subunit NRZ28_14455 PF08463 EcoEI R protein C-terminal NRZ28_14460 PF02384 N-6 DNA Methylase NRZ28_14460 PF12161 HsdM N-terminal domain NRZ28_14465 PF01420 Type I restriction modification DNA specificity domain NRZ28_14495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_14495 PF03466 LysR substrate binding domain NRZ28_14500 PF02447 GntP family permease NRZ28_14505 PF00291 Pyridoxal-phosphate dependent enzyme NRZ28_14515 PF00180 Isocitrate/isopropylmalate dehydrogenase NRZ28_14520 PF12833 Helix-turn-helix domain NRZ28_14525 PF01238 Phosphomannose isomerase type I NRZ28_14555 PF00155 Aminotransferase class I and II NRZ28_14560 PF00367 phosphotransferase system, EIIB NRZ28_14560 PF02378 Phosphotransferase system, EIIC NRZ28_14565 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRZ28_14565 PF00356 Bacterial regulatory proteins, lacI family NRZ28_14595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRZ28_14595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRZ28_14595 PF02378 Phosphotransferase system, EIIC NRZ28_14600 PF09013 YopH, N-terminal NRZ28_14610 PF07690 Major Facilitator Superfamily NRZ28_14615 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRZ28_14615 PF02378 Phosphotransferase system, EIIC NRZ28_14615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRZ28_14625 PF00849 RNA pseudouridylate synthase NRZ28_14630 PF00293 NUDIX domain NRZ28_14640 PF04356 Protein of unknown function (DUF489) NRZ28_14645 PF00206 Lyase NRZ28_14645 PF08328 Adenylosuccinate lyase C-terminal NRZ28_14650 PF08007 Cupin superfamily protein NRZ28_14655 PF13508 Acetyltransferase (GNAT) domain NRZ28_14665 PF02798 Glutathione S-transferase, N-terminal domain NRZ28_14670 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NRZ28_14670 PF01243 Pyridoxamine 5'-phosphate oxidase NRZ28_14685 PF01189 16S rRNA methyltransferase RsmB/F NRZ28_14685 PF01029 NusB family NRZ28_14690 PF00462 Glutaredoxin NRZ28_14695 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRZ28_14695 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRZ28_14700 PF04333 MlaA lipoprotein NRZ28_14705 PF03918 Cytochrome C biogenesis protein NRZ28_14710 PF03918 Cytochrome C biogenesis protein NRZ28_14715 PF08534 Redoxin NRZ28_14720 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRZ28_14720 PF01578 Cytochrome C assembly protein NRZ28_14725 PF03100 CcmE NRZ28_14730 PF04995 Heme exporter protein D (CcmD) NRZ28_14735 PF01578 Cytochrome C assembly protein NRZ28_14740 PF03379 CcmB protein NRZ28_14745 PF00005 ABC transporter NRZ28_14755 PF01584 CheW-like domain NRZ28_14765 PF13614 AAA domain NRZ28_14770 PF00691 OmpA family NRZ28_14770 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRZ28_14775 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_14780 PF00072 Response regulator receiver domain NRZ28_14780 PF01339 CheB methylesterase NRZ28_14785 PF00072 Response regulator receiver domain NRZ28_14785 PF01627 Hpt domain NRZ28_14785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_14785 PF01584 CheW-like domain NRZ28_14785 PF02895 Signal transducing histidine kinase, homodimeric domain NRZ28_14790 PF04344 Chemotaxis phosphatase, CheZ NRZ28_14795 PF00072 Response regulator receiver domain NRZ28_14800 PF04542 Sigma-70 region 2 NRZ28_14800 PF04539 Sigma-70 region 3 NRZ28_14800 PF04545 Sigma-70, region 4 NRZ28_14805 PF10609 NUBPL iron-transfer P-loop NTPase NRZ28_14810 PF00448 SRP54-type protein, GTPase domain NRZ28_14815 PF00771 FHIPEP family NRZ28_14820 PF01312 FlhB HrpN YscU SpaS Family NRZ28_14825 PF01311 Bacterial export proteins, family 1 NRZ28_14830 PF01313 Bacterial export proteins, family 3 NRZ28_14835 PF00813 FliP family NRZ28_14840 PF04347 Flagellar biosynthesis protein, FliO NRZ28_14845 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRZ28_14850 PF02154 Flagellar motor switch protein FliM NRZ28_14850 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRZ28_14870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRZ28_14870 PF18269 T3SS EscN ATPase C-terminal domain NRZ28_14880 PF14842 FliG N-terminal domain NRZ28_14880 PF01706 FliG C-terminal domain NRZ28_14880 PF14841 FliG middle domain NRZ28_14885 PF01514 Secretory protein of YscJ/FliF family NRZ28_14885 PF08345 Flagellar M-ring protein C-terminal NRZ28_14890 PF02049 Flagellar hook-basal body complex protein FliE NRZ28_14900 PF00072 Response regulator receiver domain NRZ28_14905 PF18693 TRAM domain NRZ28_14905 PF00919 Uncharacterized protein family UPF0004 NRZ28_14905 PF04055 Radical SAM superfamily NRZ28_14915 PF16671 Actin cross-linking domain NRZ28_14915 PF12146 Serine aminopeptidase, S33 NRZ28_14915 PF11647 Membrane Localization Domain NRZ28_14915 PF11713 Peptidase C80 family NRZ28_14915 PF07634 RtxA repeat NRZ28_14920 PF02794 RTX toxin acyltransferase family NRZ28_14930 PF03412 Peptidase C39 family NRZ28_14930 PF00664 ABC transporter transmembrane region NRZ28_14930 PF00005 ABC transporter NRZ28_14940 PF03412 Peptidase C39 family NRZ28_14940 PF00005 ABC transporter NRZ28_14940 PF00664 ABC transporter transmembrane region NRZ28_14945 PF00486 Transcriptional regulatory protein, C terminal NRZ28_14945 PF00072 Response regulator receiver domain NRZ28_14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_14955 PF02685 Glucokinase NRZ28_14960 PF01418 Helix-turn-helix domain, rpiR family NRZ28_14960 PF01380 SIS domain NRZ28_14965 PF02887 Pyruvate kinase, alpha/beta domain NRZ28_14965 PF00224 Pyruvate kinase, barrel domain NRZ28_14975 PF00873 AcrB/AcrD/AcrF family NRZ28_14980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRZ28_14980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRZ28_14980 PF09317 Domain of unknown function (DUF1974) NRZ28_14980 PF02770 Acyl-CoA dehydrogenase, middle domain NRZ28_14985 PF00440 Bacterial regulatory proteins, tetR family NRZ28_15000 PF00384 Molybdopterin oxidoreductase NRZ28_15005 PF02634 FdhD/NarQ family NRZ28_15010 PF03466 LysR substrate binding domain NRZ28_15010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_15030 PF00936 BMC domain NRZ28_15035 PF00936 BMC domain NRZ28_15040 PF00936 BMC domain NRZ28_15045 PF00171 Aldehyde dehydrogenase family NRZ28_15045 PF00465 Iron-containing alcohol dehydrogenase NRZ28_15055 PF00465 Iron-containing alcohol dehydrogenase NRZ28_15055 PF00171 Aldehyde dehydrogenase family NRZ28_15060 PF01228 Glycine radical NRZ28_15060 PF02901 Pyruvate formate lyase-like NRZ28_15065 PF13187 4Fe-4S dicluster domain NRZ28_15065 PF04055 Radical SAM superfamily NRZ28_15070 PF00936 BMC domain NRZ28_15075 PF06130 Phosphate propanoyltransferase NRZ28_15085 PF00893 Small Multidrug Resistance protein NRZ28_15090 PF00893 Small Multidrug Resistance protein NRZ28_15095 PF00672 HAMP domain NRZ28_15095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_15095 PF13426 PAS domain NRZ28_15095 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_15100 PF00486 Transcriptional regulatory protein, C terminal NRZ28_15100 PF00072 Response regulator receiver domain NRZ28_15105 PF00529 HlyD membrane-fusion protein of T1SS NRZ28_15105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_15110 PF00873 AcrB/AcrD/AcrF family NRZ28_15120 PF17969 L,D-transpeptidase C-terminal domain NRZ28_15120 PF01476 LysM domain NRZ28_15120 PF03734 L,D-transpeptidase catalytic domain NRZ28_15130 PF01575 MaoC like domain NRZ28_15135 PF05971 RNA methyltransferase NRZ28_15140 PF00877 NlpC/P60 family NRZ28_15145 PF01648 4'-phosphopantetheinyl transferase superfamily NRZ28_15150 PF00085 Thioredoxin NRZ28_15160 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRZ28_15165 PF00551 Formyl transferase NRZ28_15165 PF01842 ACT domain NRZ28_15175 PF13396 Phospholipase_D-nuclease N-terminal NRZ28_15175 PF13091 PLD-like domain NRZ28_15180 PF07273 Protein of unknown function (DUF1439) NRZ28_15190 PF01551 Peptidase family M23 NRZ28_15195 PF00128 Alpha amylase, catalytic domain NRZ28_15200 PF01551 Peptidase family M23 NRZ28_15200 PF10145 Phage-related minor tail protein NRZ28_15200 PF01464 Transglycosylase SLT domain NRZ28_15205 PF00230 Major intrinsic protein NRZ28_15210 PF02075 Crossover junction endodeoxyribonuclease RuvC NRZ28_15215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRZ28_15235 PF05656 Protein of unknown function (DUF805) NRZ28_15240 PF12833 Helix-turn-helix domain NRZ28_15270 PF00171 Aldehyde dehydrogenase family NRZ28_15280 PF01810 LysE type translocator NRZ28_15290 PF04055 Radical SAM superfamily NRZ28_15290 PF11842 Domain of unknown function (DUF3362) NRZ28_15290 PF08497 Radical SAM N-terminal NRZ28_15300 PF00873 AcrB/AcrD/AcrF family NRZ28_15305 PF00529 HlyD membrane-fusion protein of T1SS NRZ28_15305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_15310 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_15315 PF01734 Patatin-like phospholipase NRZ28_15320 PF00209 Sodium:neurotransmitter symporter family NRZ28_15335 PF01389 OmpA-like transmembrane domain NRZ28_15335 PF00691 OmpA family NRZ28_15340 PF00691 OmpA family NRZ28_15340 PF01389 OmpA-like transmembrane domain NRZ28_15345 PF01389 OmpA-like transmembrane domain NRZ28_15345 PF00691 OmpA family NRZ28_15350 PF03949 Malic enzyme, NAD binding domain NRZ28_15350 PF00390 Malic enzyme, N-terminal domain NRZ28_15355 PF12833 Helix-turn-helix domain NRZ28_15360 PF01554 MatE NRZ28_15365 PF10692 Protein of unknown function (DUF2498) NRZ28_15370 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_15370 PF00072 Response regulator receiver domain NRZ28_15375 PF00860 Permease family NRZ28_15385 PF01235 Sodium:alanine symporter family NRZ28_15390 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRZ28_15390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRZ28_15395 PF01699 Sodium/calcium exchanger protein NRZ28_15400 PF08534 Redoxin NRZ28_15410 PF00293 NUDIX domain NRZ28_15430 PF00005 ABC transporter NRZ28_15435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRZ28_15435 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRZ28_15440 PF03932 CutC family NRZ28_15445 PF00480 ROK family NRZ28_15455 PF01435 Peptidase family M48 NRZ28_15460 PF12849 PBP superfamily domain NRZ28_15465 PF11808 Phosphate regulon sensor protein PhoR NRZ28_15465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_15465 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_15465 PF00989 PAS fold NRZ28_15470 PF00486 Transcriptional regulatory protein, C terminal NRZ28_15470 PF00072 Response regulator receiver domain NRZ28_15475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRZ28_15480 PF02515 CoA-transferase family III NRZ28_15485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRZ28_15485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRZ28_15485 PF02770 Acyl-CoA dehydrogenase, middle domain NRZ28_15490 PF01590 GAF domain NRZ28_15490 PF02954 Bacterial regulatory protein, Fis family NRZ28_15490 PF00158 Sigma-54 interaction domain NRZ28_15495 PF00171 Aldehyde dehydrogenase family NRZ28_15505 PF00892 EamA-like transporter family NRZ28_15510 PF00072 Response regulator receiver domain NRZ28_15510 PF12431 Transcriptional regulator NRZ28_15515 PF00989 PAS fold NRZ28_15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_15515 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NRZ28_15515 PF17203 Single cache domain 3 NRZ28_15520 PF03949 Malic enzyme, NAD binding domain NRZ28_15520 PF00390 Malic enzyme, N-terminal domain NRZ28_15525 PF03390 2-hydroxycarboxylate transporter family NRZ28_15535 PF01047 MarR family NRZ28_15540 PF00529 HlyD membrane-fusion protein of T1SS NRZ28_15540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_15565 PF01679 Proteolipid membrane potential modulator NRZ28_15575 PF03477 ATP cone domain NRZ28_15575 PF13597 Anaerobic ribonucleoside-triphosphate reductase NRZ28_15585 PF12826 Helix-hairpin-helix motif NRZ28_15585 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NRZ28_15585 PF03120 NAD-dependent DNA ligase OB-fold domain NRZ28_15585 PF01653 NAD-dependent DNA ligase adenylation domain NRZ28_15585 PF00533 BRCA1 C Terminus (BRCT) domain NRZ28_15590 PF04354 ZipA, C-terminal FtsZ-binding domain NRZ28_15595 PF06470 SMC proteins Flexible Hinge Domain NRZ28_15595 PF02463 RecF/RecN/SMC N terminal domain NRZ28_15605 PF03458 UPF0126 domain NRZ28_15615 PF05951 Bacterial protein of unknown function (DUF882) NRZ28_15620 PF01471 Putative peptidoglycan binding domain NRZ28_15620 PF03734 L,D-transpeptidase catalytic domain NRZ28_15635 PF00535 Glycosyl transferase family 2 NRZ28_15650 PF00128 Alpha amylase, catalytic domain NRZ28_15660 PF00196 Bacterial regulatory proteins, luxR family NRZ28_15660 PF00072 Response regulator receiver domain NRZ28_15685 PF02254 TrkA-N domain NRZ28_15685 PF02080 TrkA-C domain NRZ28_15685 PF00999 Sodium/hydrogen exchanger family NRZ28_15690 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_15695 PF01171 PP-loop family NRZ28_15695 PF09179 TilS substrate binding domain NRZ28_15695 PF11734 TilS substrate C-terminal domain NRZ28_15700 PF05649 Peptidase family M13 NRZ28_15700 PF01431 Peptidase family M13 NRZ28_15710 PF00005 ABC transporter NRZ28_15710 PF12848 ABC transporter NRZ28_15720 PF13520 Amino acid permease NRZ28_15730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_15730 PF03466 LysR substrate binding domain NRZ28_15740 PF08543 Phosphomethylpyrimidine kinase NRZ28_15745 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NRZ28_15745 PF01276 Orn/Lys/Arg decarboxylase, major domain NRZ28_15745 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NRZ28_15750 PF13520 Amino acid permease NRZ28_15755 PF18500 CadC C-terminal domain 1 NRZ28_15755 PF00486 Transcriptional regulatory protein, C terminal NRZ28_15760 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NRZ28_15765 PF01336 OB-fold nucleic acid binding domain NRZ28_15765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NRZ28_15765 PF02811 PHP domain NRZ28_15765 PF14579 Helix-hairpin-helix motif NRZ28_15765 PF07733 Bacterial DNA polymerase III alpha NTPase domain NRZ28_15770 PF01351 Ribonuclease HII NRZ28_15775 PF02684 Lipid-A-disaccharide synthetase NRZ28_15780 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NRZ28_15780 PF00132 Bacterial transferase hexapeptide (six repeats) NRZ28_15785 PF07977 FabA-like domain NRZ28_15790 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NRZ28_15790 PF00132 Bacterial transferase hexapeptide (six repeats) NRZ28_15795 PF03938 Outer membrane protein (OmpH-like) NRZ28_15800 PF01103 Surface antigen NRZ28_15800 PF07244 Surface antigen variable number repeat NRZ28_15805 PF17820 PDZ domain NRZ28_15805 PF02163 Peptidase family M50 NRZ28_15810 PF13288 DXP reductoisomerase C-terminal domain NRZ28_15810 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NRZ28_15810 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NRZ28_15820 PF01255 Putative undecaprenyl diphosphate synthase NRZ28_15825 PF01765 Ribosome recycling factor NRZ28_15830 PF00696 Amino acid kinase family NRZ28_15835 PF00889 Elongation factor TS NRZ28_15840 PF00318 Ribosomal protein S2 NRZ28_15845 PF00557 Metallopeptidase family M24 NRZ28_15850 PF01842 ACT domain NRZ28_15850 PF01966 HD domain NRZ28_15850 PF08335 GlnD PII-uridylyltransferase NRZ28_15850 PF01909 Nucleotidyltransferase domain NRZ28_15855 PF14602 Hexapeptide repeat of succinyl-transferase NRZ28_15855 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NRZ28_15855 PF00132 Bacterial transferase hexapeptide (six repeats) NRZ28_15860 PF11944 Protein of unknown function (DUF3461) NRZ28_15865 PF00367 phosphotransferase system, EIIB NRZ28_15865 PF02378 Phosphotransferase system, EIIC NRZ28_15870 PF07148 Maltose operon periplasmic protein precursor (MalM) NRZ28_15875 PF02264 LamB porin NRZ28_15880 PF00258 Flavodoxin NRZ28_15885 PF00849 RNA pseudouridylate synthase NRZ28_15890 PF04287 tRNA pseudouridine synthase C NRZ28_15915 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NRZ28_15920 PF07348 Syd protein (SUKH-2) NRZ28_15925 PF14489 QueF-like protein NRZ28_15925 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NRZ28_15935 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_15940 PF11892 Domain of unknown function (DUF3412) NRZ28_15940 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NRZ28_15940 PF03641 Possible lysine decarboxylase NRZ28_15945 PF01367 5'-3' exonuclease, C-terminal SAM fold NRZ28_15945 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRZ28_15950 PF18324 Hypothetical protein TT1725 NRZ28_15950 PF00180 Isocitrate/isopropylmalate dehydrogenase NRZ28_15960 PF01728 FtsJ-like methyltransferase NRZ28_15960 PF18125 RlmM ferredoxin-like domain NRZ28_15965 PF04241 Protein of unknown function (DUF423) NRZ28_15975 PF03466 LysR substrate binding domain NRZ28_15975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_15980 PF00672 HAMP domain NRZ28_15980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_15985 PF00817 impB/mucB/samB family NRZ28_15985 PF11799 impB/mucB/samB family C-terminal domain NRZ28_15985 PF11798 IMS family HHH motif NRZ28_16000 PF02424 ApbE family NRZ28_16005 PF00970 Oxidoreductase FAD-binding domain NRZ28_16005 PF00111 2Fe-2S iron-sulfur cluster binding domain NRZ28_16005 PF00175 Oxidoreductase NAD-binding domain NRZ28_16010 PF02508 Rnf-Nqr subunit, membrane protein NRZ28_16015 PF02508 Rnf-Nqr subunit, membrane protein NRZ28_16020 PF04205 FMN-binding domain NRZ28_16025 PF03116 NQR2, RnfD, RnfE family NRZ28_16030 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NRZ28_16030 PF11973 NQRA C-terminal domain NRZ28_16035 PF01722 BolA-like protein NRZ28_16040 PF05175 Methyltransferase small domain NRZ28_16050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRZ28_16060 PF07690 Major Facilitator Superfamily NRZ28_16065 PF03502 Nucleoside-specific channel-forming protein, Tsx NRZ28_16070 PF04461 Protein of unknown function (DUF520) NRZ28_16075 PF02558 Ketopantoate reductase PanE/ApbA NRZ28_16075 PF08546 Ketopantoate reductase PanE/ApbA C terminal NRZ28_16080 PF01965 DJ-1/PfpI family NRZ28_16085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRZ28_16085 PF00205 Thiamine pyrophosphate enzyme, central domain NRZ28_16085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRZ28_16090 PF03306 Alpha-acetolactate decarboxylase NRZ28_16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_16095 PF03466 LysR substrate binding domain NRZ28_16125 PF03496 ADP-ribosyltransferase exoenzyme NRZ28_16125 PF03534 Salmonella virulence plasmid 65kDa B protein NRZ28_16140 PF05638 Type VI secretion system effector, Hcp NRZ28_16145 PF03472 Autoinducer binding domain NRZ28_16145 PF00196 Bacterial regulatory proteins, luxR family NRZ28_16155 PF06965 Na+/H+ antiporter 1 NRZ28_16155 PF13462 Thioredoxin NRZ28_16160 PF16363 GDP-mannose 4,6 dehydratase NRZ28_16165 PF00175 Oxidoreductase NAD-binding domain NRZ28_16165 PF00970 Oxidoreductase FAD-binding domain NRZ28_16165 PF00042 Globin NRZ28_16170 PF03063 Prismane/CO dehydrogenase family NRZ28_16175 PF00210 Ferritin-like domain NRZ28_16215 PF00106 short chain dehydrogenase NRZ28_16225 PF03441 FAD binding domain of DNA photolyase NRZ28_16225 PF00875 DNA photolyase NRZ28_16230 PF13411 MerR HTH family regulatory protein NRZ28_16235 PF08349 Protein of unknown function (DUF1722) NRZ28_16265 PF00800 Prephenate dehydratase NRZ28_16265 PF01817 Chorismate mutase type II NRZ28_16295 PF09588 YqaJ-like viral recombinase domain NRZ28_16340 PF04002 RadC-like JAB domain NRZ28_16375 PF09313 Domain of unknown function (DUF1971) NRZ28_16375 PF03848 Tellurite resistance protein TehB NRZ28_16380 PF04471 Restriction endonuclease NRZ28_16380 PF14338 Mrr N-terminal domain NRZ28_16400 PF00717 Peptidase S24-like NRZ28_16405 PF13438 Domain of unknown function (DUF4113) NRZ28_16405 PF00817 impB/mucB/samB family NRZ28_16405 PF11799 impB/mucB/samB family C-terminal domain NRZ28_16405 PF11798 IMS family HHH motif NRZ28_16410 PF02661 Fic/DOC family NRZ28_16410 PF13784 Fic/DOC family N-terminal NRZ28_16435 PF00455 DeoR C terminal sensor domain NRZ28_16435 PF08220 DeoR-like helix-turn-helix domain NRZ28_16440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRZ28_16440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRZ28_16445 PF17042 Nucleotide-binding C-terminal domain NRZ28_16445 PF07005 Sugar-binding N-terminal domain NRZ28_16450 PF00596 Class II Aldolase and Adducin N-terminal domain NRZ28_16455 PF01261 Xylose isomerase-like TIM barrel NRZ28_16460 PF01370 NAD dependent epimerase/dehydratase family NRZ28_16465 PF02447 GntP family permease NRZ28_16475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_16475 PF02743 Cache domain NRZ28_16475 PF00672 HAMP domain NRZ28_16480 PF03573 outer membrane porin, OprD family NRZ28_16485 PF00106 short chain dehydrogenase NRZ28_16510 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NRZ28_16520 PF02805 Metal binding domain of Ada NRZ28_16520 PF00730 HhH-GPD superfamily base excision DNA repair protein NRZ28_16520 PF12833 Helix-turn-helix domain NRZ28_16520 PF06029 AlkA N-terminal domain NRZ28_16525 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRZ28_16525 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRZ28_16530 PF01136 Peptidase family U32 NRZ28_16530 PF12392 Collagenase NRZ28_16535 PF01810 LysE type translocator NRZ28_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_16540 PF03466 LysR substrate binding domain NRZ28_16545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRZ28_16545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRZ28_16550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_16550 PF00672 HAMP domain NRZ28_16550 PF02743 Cache domain NRZ28_16555 PF00072 Response regulator receiver domain NRZ28_16565 PF01627 Hpt domain NRZ28_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_16565 PF02895 Signal transducing histidine kinase, homodimeric domain NRZ28_16565 PF09078 CheY binding NRZ28_16565 PF01584 CheW-like domain NRZ28_16570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_16570 PF00672 HAMP domain NRZ28_16570 PF12729 Four helix bundle sensory module for signal transduction NRZ28_16575 PF01584 CheW-like domain NRZ28_16580 PF00672 HAMP domain NRZ28_16580 PF02203 Tar ligand binding domain homologue NRZ28_16580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_16585 PF01739 CheR methyltransferase, SAM binding domain NRZ28_16585 PF03705 CheR methyltransferase, all-alpha domain NRZ28_16590 PF03975 CheD chemotactic sensory transduction NRZ28_16595 PF01339 CheB methylesterase NRZ28_16595 PF00072 Response regulator receiver domain NRZ28_16600 PF00266 Aminotransferase class-V NRZ28_16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_16625 PF00072 Response regulator receiver domain NRZ28_16625 PF00989 PAS fold NRZ28_16625 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_16625 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_16625 PF01627 Hpt domain NRZ28_16630 PF00196 Bacterial regulatory proteins, luxR family NRZ28_16630 PF00072 Response regulator receiver domain NRZ28_16640 PF15976 CS1-pili formation C-terminal NRZ28_16640 PF16967 E-set like domain NRZ28_16655 PF00563 EAL domain NRZ28_16655 PF01590 GAF domain NRZ28_16655 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_16655 PF00989 PAS fold NRZ28_16660 PF01136 Peptidase family U32 NRZ28_16660 PF16325 Peptidase family U32 C-terminal domain NRZ28_16665 PF12838 4Fe-4S dicluster domain NRZ28_16675 PF00842 Alanine racemase, C-terminal domain NRZ28_16675 PF01168 Alanine racemase, N-terminal domain NRZ28_16680 PF00772 DnaB-like helicase N terminal domain NRZ28_16680 PF03796 DnaB-like helicase C terminal domain NRZ28_16690 PF00563 EAL domain NRZ28_16690 PF12792 CSS motif domain associated with EAL NRZ28_16695 PF02872 5'-nucleotidase, C-terminal domain NRZ28_16695 PF00149 Calcineurin-like phosphoesterase NRZ28_16715 PF02954 Bacterial regulatory protein, Fis family NRZ28_16715 PF00072 Response regulator receiver domain NRZ28_16715 PF00158 Sigma-54 interaction domain NRZ28_16720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRZ28_16720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRZ28_16730 PF04102 SlyX NRZ28_16735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRZ28_16740 PF09526 Probable metal-binding protein (DUF2387) NRZ28_16750 PF01584 CheW-like domain NRZ28_16750 PF00072 Response regulator receiver domain NRZ28_16755 PF00561 alpha/beta hydrolase fold NRZ28_16760 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_16760 PF00360 Phytochrome region NRZ28_16760 PF00563 EAL domain NRZ28_16760 PF01590 GAF domain NRZ28_16765 PF06794 Uncharacterised protein family (UPF0270) NRZ28_16770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRZ28_16770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRZ28_16770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRZ28_16775 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRZ28_16780 PF00535 Glycosyl transferase family 2 NRZ28_16785 PF00551 Formyl transferase NRZ28_16785 PF01370 NAD dependent epimerase/dehydratase family NRZ28_16785 PF02911 Formyl transferase, C-terminal domain NRZ28_16790 PF01522 Polysaccharide deacetylase NRZ28_16795 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NRZ28_16800 PF00892 EamA-like transporter family NRZ28_16805 PF00893 Small Multidrug Resistance protein NRZ28_16810 PF00485 Phosphoribulokinase / Uridine kinase family NRZ28_16825 PF02566 OsmC-like protein NRZ28_16830 PF00027 Cyclic nucleotide-binding domain NRZ28_16830 PF13545 Crp-like helix-turn-helix domain NRZ28_16835 PF13847 Methyltransferase domain NRZ28_16840 PF18416 N-acetylglucosamine binding protein domain 2 NRZ28_16840 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRZ28_16845 PF17945 Beta/Gamma crystallin NRZ28_16845 PF12561 ToxR activated gene A lipoprotein domain NRZ28_16850 PF00704 Glycosyl hydrolases family 18 NRZ28_16850 PF08329 Chitinase A, N-terminal domain NRZ28_16855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_16855 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_16855 PF00989 PAS fold NRZ28_16865 PF13443 Cro/C1-type HTH DNA-binding domain NRZ28_16870 PF12832 MFS_1 like family NRZ28_16875 PF00593 TonB dependent receptor NRZ28_16875 PF07715 TonB-dependent Receptor Plug Domain NRZ28_16895 PF01243 Pyridoxamine 5'-phosphate oxidase NRZ28_16900 PF06228 Haem utilisation ChuX/HutX NRZ28_16910 PF01032 FecCD transport family NRZ28_16915 PF00005 ABC transporter NRZ28_16925 PF01370 NAD dependent epimerase/dehydratase family NRZ28_16935 PF01791 DeoC/LacD family aldolase NRZ28_16940 PF07662 Na+ dependent nucleoside transporter C-terminus NRZ28_16940 PF01773 Na+ dependent nucleoside transporter N-terminus NRZ28_16940 PF07670 Nucleoside recognition NRZ28_16945 PF01048 Phosphorylase superfamily NRZ28_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_16950 PF03466 LysR substrate binding domain NRZ28_16965 PF01464 Transglycosylase SLT domain NRZ28_16970 PF01048 Phosphorylase superfamily NRZ28_16985 PF00005 ABC transporter NRZ28_16985 PF12848 ABC transporter NRZ28_16995 PF00860 Permease family NRZ28_17000 PF00226 DnaJ domain NRZ28_17000 PF05099 Tellurite resistance protein TerB NRZ28_17005 PF00483 Nucleotidyl transferase NRZ28_17010 PF01636 Phosphotransferase enzyme family NRZ28_17015 PF04453 LPS transport system D NRZ28_17015 PF03968 OstA-like protein NRZ28_17020 PF00639 PPIC-type PPIASE domain NRZ28_17020 PF09312 SurA N-terminal domain NRZ28_17025 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NRZ28_17030 PF00398 Ribosomal RNA adenine dimethylase NRZ28_17035 PF04379 ApaG domain NRZ28_17040 PF00149 Calcineurin-like phosphoesterase NRZ28_17050 PF00296 Luciferase-like monooxygenase NRZ28_17070 PF13193 AMP-binding enzyme C-terminal domain NRZ28_17070 PF00501 AMP-binding enzyme NRZ28_17075 PF07670 Nucleoside recognition NRZ28_17080 PF01018 GTP1/OBG NRZ28_17080 PF01926 50S ribosome-binding GTPase NRZ28_17085 PF01016 Ribosomal L27 protein NRZ28_17090 PF00829 Ribosomal prokaryotic L21 protein NRZ28_17095 PF00348 Polyprenyl synthetase NRZ28_17100 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NRZ28_17105 PF01145 SPFH domain / Band 7 family NRZ28_17110 PF01145 SPFH domain / Band 7 family NRZ28_17110 PF12221 Bacterial membrane protein N terminal NRZ28_17115 PF16360 GTP-binding GTPase Middle Region NRZ28_17115 PF13167 GTP-binding GTPase N-terminal NRZ28_17115 PF01926 50S ribosome-binding GTPase NRZ28_17120 PF17209 Hfq protein NRZ28_17130 PF08676 MutL C terminal dimerisation domain NRZ28_17130 PF01119 DNA mismatch repair protein, C-terminal domain NRZ28_17135 PF01520 N-acetylmuramoyl-L-alanine amidase NRZ28_17140 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NRZ28_17145 PF01256 Carbohydrate kinase NRZ28_17145 PF03853 YjeF-related protein N-terminus NRZ28_17150 PF08331 Domain of unknown function (DUF1730) NRZ28_17155 PF00480 ROK family NRZ28_17165 PF00005 ABC transporter NRZ28_17165 PF09383 NIL domain NRZ28_17170 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_17175 PF03180 NLPA lipoprotein NRZ28_17180 PF02357 Transcription termination factor nusG NRZ28_17195 PF12729 Four helix bundle sensory module for signal transduction NRZ28_17195 PF00672 HAMP domain NRZ28_17195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_17200 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_17200 PF00563 EAL domain NRZ28_17200 PF03707 Bacterial signalling protein N terminal repeat NRZ28_17205 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_17205 PF00072 Response regulator receiver domain NRZ28_17205 PF09456 RcsC Alpha-Beta-Loop (ABL) NRZ28_17205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_17215 PF13286 Phosphohydrolase-associated domain NRZ28_17215 PF01966 HD domain NRZ28_17220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_17220 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_17220 PF18415 Histidine kinase receptor ArcB trans-membrane domain NRZ28_17220 PF01627 Hpt domain NRZ28_17220 PF00989 PAS fold NRZ28_17220 PF00072 Response regulator receiver domain NRZ28_17240 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NRZ28_17245 PF03466 LysR substrate binding domain NRZ28_17245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_17255 PF01259 SAICAR synthetase NRZ28_17260 PF06804 NlpB/DapX lipoprotein NRZ28_17265 PF00701 Dihydrodipicolinate synthetase family NRZ28_17270 PF01842 ACT domain NRZ28_17275 PF00578 AhpC/TSA family NRZ28_17280 PF03887 YfbU domain NRZ28_17285 PF04217 Protein of unknown function, DUF412 NRZ28_17290 PF00871 Acetokinase family NRZ28_17295 PF01515 Phosphate acetyl/butaryl transferase NRZ28_17295 PF07085 DRTGG domain NRZ28_17300 PF10369 Small subunit of acetolactate synthase NRZ28_17305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRZ28_17305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRZ28_17305 PF00205 Thiamine pyrophosphate enzyme, central domain NRZ28_17315 PF04101 Glycosyltransferase family 28 C-terminal domain NRZ28_17315 PF03033 Glycosyltransferase family 28 N-terminal domain NRZ28_17320 PF01569 PAP2 superfamily NRZ28_17330 PF00682 HMGL-like NRZ28_17330 PF08502 LeuA allosteric (dimerisation) domain NRZ28_17335 PF00180 Isocitrate/isopropylmalate dehydrogenase NRZ28_17340 PF00330 Aconitase family (aconitate hydratase) NRZ28_17345 PF00694 Aconitase C-terminal domain NRZ28_17365 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_17370 PF00005 ABC transporter NRZ28_17375 PF13638 PIN domain NRZ28_17375 PF02562 PhoH-like protein NRZ28_17385 PF08343 Ribonucleotide reductase N-terminal NRZ28_17385 PF02867 Ribonucleotide reductase, barrel domain NRZ28_17385 PF00317 Ribonucleotide reductase, all-alpha domain NRZ28_17415 PF00271 Helicase conserved C-terminal domain NRZ28_17415 PF12137 RNA polymerase recycling family C-terminal NRZ28_17415 PF00176 SNF2 family N-terminal domain NRZ28_17415 PF18339 RapA N-terminal Tudor like domain 1 NRZ28_17415 PF18337 RapA N-terminal Tudor like domain NRZ28_17420 PF00849 RNA pseudouridylate synthase NRZ28_17430 PF13188 PAS domain NRZ28_17430 PF03707 Bacterial signalling protein N terminal repeat NRZ28_17430 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_17430 PF00563 EAL domain NRZ28_17440 PF00118 TCP-1/cpn60 chaperonin family NRZ28_17445 PF00166 Chaperonin 10 Kd subunit NRZ28_17450 PF01554 MatE NRZ28_17455 PF04186 FxsA cytoplasmic membrane protein NRZ28_17460 PF10415 Fumarase C C-terminus NRZ28_17460 PF00206 Lyase NRZ28_17465 PF03605 Anaerobic c4-dicarboxylate membrane transporter NRZ28_17470 PF00267 Gram-negative porin NRZ28_17475 PF07690 Major Facilitator Superfamily NRZ28_17480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_17480 PF03466 LysR substrate binding domain NRZ28_17485 PF03413 Peptidase propeptide and YPEB domain NRZ28_17485 PF01447 Thermolysin metallopeptidase, catalytic domain NRZ28_17485 PF02868 Thermolysin metallopeptidase, alpha-helical domain NRZ28_17485 PF07504 Fungalysin/Thermolysin Propeptide Motif NRZ28_17485 PF04151 Bacterial pre-peptidase C-terminal domain NRZ28_17490 PF13302 Acetyltransferase (GNAT) domain NRZ28_17495 PF13302 Acetyltransferase (GNAT) domain NRZ28_17505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRZ28_17505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRZ28_17510 PF07690 Major Facilitator Superfamily NRZ28_17515 PF01725 Ham1 family NRZ28_17520 PF04055 Radical SAM superfamily NRZ28_17520 PF06969 HemN C-terminal domain NRZ28_17525 PF03889 Alternative ribosome-rescue factor A NRZ28_17530 PF01872 RibD C-terminal domain NRZ28_17535 PF13411 MerR HTH family regulatory protein NRZ28_17540 PF02142 MGS-like domain NRZ28_17540 PF01808 AICARFT/IMPCHase bienzyme NRZ28_17545 PF02844 Phosphoribosylglycinamide synthetase, N domain NRZ28_17545 PF02843 Phosphoribosylglycinamide synthetase, C domain NRZ28_17545 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NRZ28_17560 PF00128 Alpha amylase, catalytic domain NRZ28_17570 PF04546 Sigma-70, non-essential region NRZ28_17570 PF03979 Sigma-70 factor, region 1.1 NRZ28_17570 PF04539 Sigma-70 region 3 NRZ28_17570 PF04542 Sigma-70 region 2 NRZ28_17570 PF00140 Sigma-70 factor, region 1.2 NRZ28_17570 PF04545 Sigma-70, region 4 NRZ28_17575 PF10410 DnaB-helicase binding domain of primase NRZ28_17575 PF08275 DNA primase catalytic core, N-terminal domain NRZ28_17575 PF01807 CHC2 zinc finger NRZ28_17575 PF08278 DNA primase DnaG DnaB-binding NRZ28_17580 PF09424 Yqey-like protein NRZ28_17585 PF01165 Ribosomal protein S21 NRZ28_17590 PF00814 Glycoprotease family NRZ28_17595 PF00140 Sigma-70 factor, region 1.2 NRZ28_17595 PF04542 Sigma-70 region 2 NRZ28_17595 PF04539 Sigma-70 region 3 NRZ28_17595 PF04545 Sigma-70, region 4 NRZ28_17600 PF01551 Peptidase family M23 NRZ28_17600 PF01476 LysM domain NRZ28_17605 PF09335 SNARE associated Golgi protein NRZ28_17615 PF01975 Survival protein SurE NRZ28_17620 PF01142 tRNA pseudouridine synthase D (TruD) NRZ28_17625 PF02542 YgbB family NRZ28_17630 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRZ28_17635 PF04977 Septum formation initiator NRZ28_17640 PF00113 Enolase, C-terminal TIM barrel domain NRZ28_17640 PF03952 Enolase, N-terminal domain NRZ28_17645 PF06418 CTP synthase N-terminus NRZ28_17645 PF00117 Glutamine amidotransferase class-I NRZ28_17650 PF03819 MazG nucleotide pyrophosphohydrolase domain NRZ28_17655 PF13291 ACT domain NRZ28_17655 PF04607 Region found in RelA / SpoT proteins NRZ28_17655 PF02824 TGS domain NRZ28_17660 PF05958 tRNA (Uracil-5-)-methyltransferase NRZ28_17660 PF01938 TRAM domain NRZ28_17665 PF00672 HAMP domain NRZ28_17665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_17665 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_17665 PF01627 Hpt domain NRZ28_17665 PF00072 Response regulator receiver domain NRZ28_17665 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRZ28_17670 PF07308 Protein of unknown function (DUF1456) NRZ28_17675 PF01510 N-acetylmuramoyl-L-alanine amidase NRZ28_17680 PF08220 DeoR-like helix-turn-helix domain NRZ28_17680 PF00455 DeoR C terminal sensor domain NRZ28_17685 PF08013 Tagatose 6 phosphate kinase NRZ28_17690 PF01380 SIS domain NRZ28_17695 PF03830 PTS system sorbose subfamily IIB component NRZ28_17700 PF03609 PTS system sorbose-specific iic component NRZ28_17705 PF03613 PTS system mannose/fructose/sorbose family IID component NRZ28_17710 PF03610 PTS system fructose IIA component NRZ28_17715 PF01979 Amidohydrolase family NRZ28_17720 PF01116 Fructose-bisphosphate aldolase class-II NRZ28_17730 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NRZ28_17735 PF11967 Recombination protein O N terminal NRZ28_17735 PF02565 Recombination protein O C terminal NRZ28_17740 PF07650 KH domain NRZ28_17740 PF01926 50S ribosome-binding GTPase NRZ28_17745 PF00035 Double-stranded RNA binding motif NRZ28_17745 PF14622 Ribonuclease-III-like NRZ28_17750 PF10502 Signal peptidase, peptidase S26 NRZ28_17755 PF03144 Elongation factor Tu domain 2 NRZ28_17755 PF00679 Elongation factor G C-terminus NRZ28_17755 PF06421 GTP-binding protein LepA C-terminus NRZ28_17755 PF00009 Elongation factor Tu GTP binding domain NRZ28_17765 PF03888 MucB/RseB N-terminal domain NRZ28_17765 PF17188 MucB/RseB C-terminal domain NRZ28_17770 PF03873 Anti sigma-E protein RseA, C-terminal domain NRZ28_17770 PF03872 Anti sigma-E protein RseA, N-terminal domain NRZ28_17775 PF08281 Sigma-70, region 4 NRZ28_17775 PF04542 Sigma-70 region 2 NRZ28_17780 PF00890 FAD binding domain NRZ28_17780 PF02910 Fumarate reductase flavoprotein C-term NRZ28_17790 PF03937 Flavinator of succinate dehydrogenase NRZ28_17795 PF01571 Aminomethyltransferase folate-binding domain NRZ28_17800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_17800 PF03466 LysR substrate binding domain NRZ28_17815 PF03091 CutA1 divalent ion tolerance protein NRZ28_17820 PF11412 Disulphide bond corrector protein DsbC NRZ28_17820 PF02683 Cytochrome C biogenesis protein transmembrane region NRZ28_17835 PF01266 FAD dependent oxidoreductase NRZ28_17840 PF01116 Fructose-bisphosphate aldolase class-II NRZ28_17845 PF00162 Phosphoglycerate kinase NRZ28_17850 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRZ28_17850 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRZ28_17855 PF00480 ROK family NRZ28_17860 PF01208 Uroporphyrinogen decarboxylase (URO-D) NRZ28_17865 PF00293 NUDIX domain NRZ28_17865 PF09297 NADH pyrophosphatase zinc ribbon domain NRZ28_17870 PF14850 DNA-binding domain of Proline dehydrogenase NRZ28_17870 PF00171 Aldehyde dehydrogenase family NRZ28_17870 PF01619 Proline dehydrogenase NRZ28_17870 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NRZ28_17875 PF08239 Bacterial SH3 domain NRZ28_17880 PF00027 Cyclic nucleotide-binding domain NRZ28_17880 PF00520 Ion transport protein NRZ28_17885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_17885 PF00672 HAMP domain NRZ28_17885 PF02743 Cache domain NRZ28_17895 PF08335 GlnD PII-uridylyltransferase NRZ28_17895 PF03710 Glutamate-ammonia ligase adenylyltransferase NRZ28_17920 PF00291 Pyridoxal-phosphate dependent enzyme NRZ28_17925 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_17930 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_17935 PF00005 ABC transporter NRZ28_17940 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_17950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRZ28_17955 PF00486 Transcriptional regulatory protein, C terminal NRZ28_17955 PF00072 Response regulator receiver domain NRZ28_17960 PF16527 Two-component sensor protein CpxA, periplasmic domain NRZ28_17960 PF00672 HAMP domain NRZ28_17960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_17960 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_17965 PF00293 NUDIX domain NRZ28_17965 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NRZ28_17965 PF09297 NADH pyrophosphatase zinc ribbon domain NRZ28_17995 PF03060 Nitronate monooxygenase NRZ28_18005 PF00445 Ribonuclease T2 family NRZ28_18020 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase NRZ28_18035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_18035 PF03466 LysR substrate binding domain NRZ28_18040 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_18045 PF00270 DEAD/DEAH box helicase NRZ28_18045 PF00271 Helicase conserved C-terminal domain NRZ28_18055 PF00753 Metallo-beta-lactamase superfamily NRZ28_18065 PF01425 Amidase NRZ28_18070 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRZ28_18075 PF03466 LysR substrate binding domain NRZ28_18075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_18080 PF04480 Protein of unknown function (DUF559) NRZ28_18090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRZ28_18095 PF00583 Acetyltransferase (GNAT) family NRZ28_18115 PF03144 Elongation factor Tu domain 2 NRZ28_18115 PF00009 Elongation factor Tu GTP binding domain NRZ28_18115 PF16658 Class II release factor RF3, C-terminal domain NRZ28_18120 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_18120 PF00072 Response regulator receiver domain NRZ28_18125 PF13188 PAS domain NRZ28_18125 PF00563 EAL domain NRZ28_18125 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_18125 PF03707 Bacterial signalling protein N terminal repeat NRZ28_18130 PF05762 VWA domain containing CoxE-like protein NRZ28_18135 PF12592 Protein of unknown function (DUF3763) NRZ28_18135 PF17868 AAA lid domain NRZ28_18135 PF07728 AAA domain (dynein-related subfamily) NRZ28_18145 PF00583 Acetyltransferase (GNAT) family NRZ28_18155 PF00501 AMP-binding enzyme NRZ28_18165 PF04262 Glutamate-cysteine ligase NRZ28_18170 PF05193 Peptidase M16 inactive domain NRZ28_18170 PF00675 Insulinase (Peptidase family M16) NRZ28_18175 PF09335 SNARE associated Golgi protein NRZ28_18180 PF02801 Beta-ketoacyl synthase, C-terminal domain NRZ28_18180 PF08990 Erythronolide synthase docking NRZ28_18180 PF16197 Ketoacyl-synthetase C-terminal extension NRZ28_18180 PF00109 Beta-ketoacyl synthase, N-terminal domain NRZ28_18180 PF08659 KR domain NRZ28_18180 PF00550 Phosphopantetheine attachment site NRZ28_18180 PF14765 Polyketide synthase dehydratase NRZ28_18180 PF08240 Alcohol dehydrogenase GroES-like domain NRZ28_18180 PF00698 Acyl transferase domain NRZ28_18200 PF00970 Oxidoreductase FAD-binding domain NRZ28_18200 PF00175 Oxidoreductase NAD-binding domain NRZ28_18205 PF03948 Ribosomal protein L9, C-terminal domain NRZ28_18205 PF01281 Ribosomal protein L9, N-terminal domain NRZ28_18210 PF01084 Ribosomal protein S18 NRZ28_18215 PF01250 Ribosomal protein S6 NRZ28_18220 PF01566 Natural resistance-associated macrophage protein NRZ28_18240 PF13673 Acetyltransferase (GNAT) domain NRZ28_18250 PF00588 SpoU rRNA Methylase family NRZ28_18250 PF08032 RNA 2'-O ribose methyltransferase substrate binding NRZ28_18270 PF08206 Ribonuclease B OB domain NRZ28_18270 PF08461 Ribonuclease R winged-helix domain NRZ28_18270 PF17876 Cold shock domain NRZ28_18270 PF00575 S1 RNA binding domain NRZ28_18270 PF00773 RNB domain NRZ28_18275 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_18280 PF02664 S-Ribosylhomocysteinase (LuxS) NRZ28_18290 PF00543 Nitrogen regulatory protein P-II NRZ28_18295 PF02540 NAD synthase NRZ28_18295 PF00795 Carbon-nitrogen hydrolase NRZ28_18330 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor NRZ28_18330 PF07963 Prokaryotic N-terminal methylation motif NRZ28_18335 PF02401 LytB protein NRZ28_18340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRZ28_18345 PF01252 Signal peptidase (SPase) II NRZ28_18350 PF00133 tRNA synthetases class I (I, L, M and V) NRZ28_18350 PF08264 Anticodon-binding domain of tRNA NRZ28_18350 PF06827 Zinc finger found in FPG and IleRS NRZ28_18355 PF01687 Riboflavin kinase NRZ28_18355 PF06574 FAD synthetase NRZ28_18360 PF03023 Lipid II flippase MurJ NRZ28_18365 PF01649 Ribosomal protein S20 NRZ28_18370 PF01022 Bacterial regulatory protein, arsR family NRZ28_18375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_18375 PF03466 LysR substrate binding domain NRZ28_18385 PF06965 Na+/H+ antiporter 1 NRZ28_18390 PF00303 Thymidylate synthase NRZ28_18395 PF01790 Prolipoprotein diacylglyceryl transferase NRZ28_18400 PF02896 PEP-utilising enzyme, TIM barrel domain NRZ28_18400 PF01590 GAF domain NRZ28_18400 PF05524 PEP-utilising enzyme, N-terminal NRZ28_18400 PF00391 PEP-utilising enzyme, mobile domain NRZ28_18405 PF00293 NUDIX domain NRZ28_18410 PF02976 DNA mismatch repair enzyme MutH NRZ28_18420 PF01245 Ribosomal protein L19 NRZ28_18425 PF01746 tRNA (Guanine-1)-methyltransferase NRZ28_18430 PF05239 PRC-barrel domain NRZ28_18430 PF01782 RimM N-terminal domain NRZ28_18435 PF00886 Ribosomal protein S16 NRZ28_18440 PF02978 Signal peptide binding domain NRZ28_18440 PF00448 SRP54-type protein, GTPase domain NRZ28_18440 PF02881 SRP54-type protein, helical bundle domain NRZ28_18445 PF01578 Cytochrome C assembly protein NRZ28_18450 PF01595 Cyclin M transmembrane N-terminal domain NRZ28_18450 PF00571 CBS domain NRZ28_18450 PF03471 Transporter associated domain NRZ28_18455 PF02082 Transcriptional regulator NRZ28_18460 PF00970 Oxidoreductase FAD-binding domain NRZ28_18460 PF00042 Globin NRZ28_18460 PF00175 Oxidoreductase NAD-binding domain NRZ28_18465 PF08238 Sel1 repeat NRZ28_18470 PF00056 lactate/malate dehydrogenase, NAD binding domain NRZ28_18470 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NRZ28_18475 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_18480 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_18485 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_18490 PF00005 ABC transporter NRZ28_18495 PF01316 Arginine repressor, DNA binding domain NRZ28_18495 PF02863 Arginine repressor, C-terminal domain NRZ28_18500 PF04261 Dyp-type peroxidase family NRZ28_18505 PF00005 ABC transporter NRZ28_18505 PF08402 TOBE domain NRZ28_18515 PF13416 Bacterial extracellular solute-binding protein NRZ28_18520 PF00543 Nitrogen regulatory protein P-II NRZ28_18525 PF00472 RF-1 domain NRZ28_18530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRZ28_18530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRZ28_18535 PF07670 Nucleoside recognition NRZ28_18535 PF07662 Na+ dependent nucleoside transporter C-terminus NRZ28_18535 PF01773 Na+ dependent nucleoside transporter N-terminus NRZ28_18540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_18540 PF03466 LysR substrate binding domain NRZ28_18545 PF00255 Glutathione peroxidase NRZ28_18555 PF02595 Glycerate kinase family NRZ28_18560 PF02447 GntP family permease NRZ28_18565 PF05651 Putative sugar diacid recognition NRZ28_18565 PF17853 GGDEF-like domain NRZ28_18565 PF13556 PucR C-terminal helix-turn-helix domain NRZ28_18570 PF06062 Uncharacterised protein family (UPF0231) NRZ28_18585 PF08447 PAS fold NRZ28_18585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_18590 PF03372 Endonuclease/Exonuclease/phosphatase family NRZ28_18605 PF00271 Helicase conserved C-terminal domain NRZ28_18605 PF00270 DEAD/DEAH box helicase NRZ28_18615 PF08534 Redoxin NRZ28_18620 PF00403 Heavy-metal-associated domain NRZ28_18625 PF11852 Domain of unknown function (DUF3372) NRZ28_18625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRZ28_18625 PF03714 Bacterial pullanase-associated domain NRZ28_18625 PF18494 Pullulanase Ins domain NRZ28_18625 PF17967 Pullulanase N2 domain NRZ28_18640 PF02583 Metal-sensitive transcriptional repressor NRZ28_18645 PF00155 Aminotransferase class I and II NRZ28_18650 PF03466 LysR substrate binding domain NRZ28_18650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_18660 PF04055 Radical SAM superfamily NRZ28_18665 PF11230 Protein of unknown function (DUF3029) NRZ28_18685 PF14684 Tricorn protease C1 domain NRZ28_18685 PF03572 Peptidase family S41 NRZ28_18685 PF07676 WD40-like Beta Propeller Repeat NRZ28_18685 PF14685 Tricorn protease PDZ domain NRZ28_18730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_18730 PF08269 Cache domain NRZ28_18735 PF18416 N-acetylglucosamine binding protein domain 2 NRZ28_18735 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRZ28_18740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_18740 PF03466 LysR substrate binding domain NRZ28_18745 PF12857 TOBE-like domain NRZ28_18745 PF00005 ABC transporter NRZ28_18750 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_18755 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_18770 PF13194 Domain of unknown function (DUF4010) NRZ28_18775 PF12464 Maltose acetyltransferase NRZ28_18775 PF14602 Hexapeptide repeat of succinyl-transferase NRZ28_18805 PF00206 Lyase NRZ28_18805 PF14698 Argininosuccinate lyase C-terminal NRZ28_18810 PF00764 Arginosuccinate synthase NRZ28_18815 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRZ28_18815 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRZ28_18820 PF00696 Amino acid kinase family NRZ28_18825 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRZ28_18825 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRZ28_18830 PF01546 Peptidase family M20/M25/M40 NRZ28_18830 PF07687 Peptidase dimerisation domain NRZ28_18835 PF00311 Phosphoenolpyruvate carboxylase NRZ28_18840 PF00696 Amino acid kinase family NRZ28_18840 PF00742 Homoserine dehydrogenase NRZ28_18840 PF03447 Homoserine dehydrogenase, NAD binding domain NRZ28_18845 PF01053 Cys/Met metabolism PLP-dependent enzyme NRZ28_18850 PF01340 Met Apo-repressor, MetJ NRZ28_18855 PF06445 GyrI-like small molecule binding domain NRZ28_18855 PF12833 Helix-turn-helix domain NRZ28_18860 PF01588 Putative tRNA binding domain NRZ28_18865 PF03222 Tryptophan/tyrosine permease family NRZ28_18870 PF00459 Inositol monophosphatase family NRZ28_18875 PF00293 NUDIX domain NRZ28_18880 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_18885 PF01479 S4 domain NRZ28_18885 PF00579 tRNA synthetases class I (W and Y) NRZ28_18890 PF00196 Bacterial regulatory proteins, luxR family NRZ28_18895 PF01203 Type II secretion system (T2SS), protein N NRZ28_18900 PF04612 Type II secretion system (T2SS), protein M NRZ28_18905 PF12693 GspL periplasmic domain NRZ28_18905 PF05134 Type II secretion system (T2SS), protein L NRZ28_18910 PF03934 Type II secretion system (T2SS), protein K NRZ28_18925 PF07963 Prokaryotic N-terminal methylation motif NRZ28_18925 PF11612 Type II secretion system (T2SS), protein J NRZ28_18930 PF07963 Prokaryotic N-terminal methylation motif NRZ28_18930 PF02501 Type II secretion system (T2SS), protein I NRZ28_18935 PF12019 Type II transport protein GspH NRZ28_18935 PF07963 Prokaryotic N-terminal methylation motif NRZ28_18940 PF07963 Prokaryotic N-terminal methylation motif NRZ28_18940 PF08334 Type II secretion system (T2SS), protein G NRZ28_18945 PF00482 Type II secretion system (T2SS), protein F NRZ28_18950 PF00437 Type II/IV secretion system protein NRZ28_18955 PF00263 Bacterial type II and III secretion system protein NRZ28_18955 PF03958 Bacterial type II/III secretion system short domain NRZ28_18960 PF11356 Type II secretion system protein C NRZ28_18965 PF01479 S4 domain NRZ28_18970 PF01430 Hsp33 protein NRZ28_18975 PF01293 Phosphoenolpyruvate carboxykinase NRZ28_18980 PF00392 Bacterial regulatory proteins, gntR family NRZ28_18985 PF01321 Creatinase/Prolidase N-terminal domain NRZ28_18985 PF00557 Metallopeptidase family M24 NRZ28_18990 PF11756 Nitrous oxide-stimulated promoter NRZ28_18995 PF00583 Acetyltransferase (GNAT) family NRZ28_19000 PF05433 Glycine zipper 2TM domain NRZ28_19005 PF02872 5'-nucleotidase, C-terminal domain NRZ28_19005 PF00149 Calcineurin-like phosphoesterase NRZ28_19010 PF01810 LysE type translocator NRZ28_19015 PF03472 Autoinducer binding domain NRZ28_19015 PF00196 Bacterial regulatory proteins, luxR family NRZ28_19020 PF00765 Autoinducer synthase NRZ28_19025 PF03466 LysR substrate binding domain NRZ28_19025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_19030 PF00773 RNB domain NRZ28_19030 PF08206 Ribonuclease B OB domain NRZ28_19030 PF17876 Cold shock domain NRZ28_19035 PF00440 Bacterial regulatory proteins, tetR family NRZ28_19045 PF02378 Phosphotransferase system, EIIC NRZ28_19045 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRZ28_19045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRZ28_19050 PF01232 Mannitol dehydrogenase Rossmann domain NRZ28_19050 PF08125 Mannitol dehydrogenase C-terminal domain NRZ28_19055 PF05068 Mannitol repressor NRZ28_19060 PF03471 Transporter associated domain NRZ28_19060 PF00999 Sodium/hydrogen exchanger family NRZ28_19060 PF02080 TrkA-C domain NRZ28_19080 PF01544 CorA-like Mg2+ transporter protein NRZ28_19085 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NRZ28_19100 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRZ28_19105 PF07670 Nucleoside recognition NRZ28_19105 PF07662 Na+ dependent nucleoside transporter C-terminus NRZ28_19105 PF01773 Na+ dependent nucleoside transporter N-terminus NRZ28_19110 PF03880 DbpA RNA binding domain NRZ28_19110 PF00270 DEAD/DEAH box helicase NRZ28_19110 PF00271 Helicase conserved C-terminal domain NRZ28_19135 PF01040 UbiA prenyltransferase family NRZ28_19140 PF00425 chorismate binding enzyme NRZ28_19145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRZ28_19145 PF16582 Middle domain of thiamine pyrophosphate NRZ28_19145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRZ28_19150 PF12697 Alpha/beta hydrolase family NRZ28_19155 PF00378 Enoyl-CoA hydratase/isomerase NRZ28_19160 PF13378 Enolase C-terminal domain-like NRZ28_19165 PF00501 AMP-binding enzyme NRZ28_19175 PF00419 Fimbrial protein NRZ28_19185 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NRZ28_19185 PF02753 Pili assembly chaperone PapD, C-terminal domain NRZ28_19190 PF13953 PapC C-terminal domain NRZ28_19190 PF00577 Outer membrane usher protein NRZ28_19190 PF13954 PapC N-terminal domain NRZ28_19200 PF00419 Fimbrial protein NRZ28_19210 PF01752 Collagenase NRZ28_19210 PF08453 Peptidase family M9 N-terminal NRZ28_19215 PF02698 DUF218 domain NRZ28_19220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRZ28_19220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRZ28_19230 PF00561 alpha/beta hydrolase fold NRZ28_19235 PF03280 Proteobacterial lipase chaperone protein NRZ28_19250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NRZ28_19250 PF12793 Sugar transport-related sRNA regulator N-term NRZ28_19260 PF01053 Cys/Met metabolism PLP-dependent enzyme NRZ28_19270 PF00465 Iron-containing alcohol dehydrogenase NRZ28_19285 PF03577 Peptidase family C69 NRZ28_19290 PF00106 short chain dehydrogenase NRZ28_19310 PF02308 MgtC family NRZ28_19315 PF00128 Alpha amylase, catalytic domain NRZ28_19315 PF02903 Alpha amylase, N-terminal ig-like domain NRZ28_19315 PF16657 Maltogenic Amylase, C-terminal domain NRZ28_19330 PF00884 Sulfatase NRZ28_19335 PF01037 Lrp/AsnC ligand binding domain NRZ28_19345 PF04204 Homoserine O-succinyltransferase NRZ28_19350 PF01966 HD domain NRZ28_19350 PF00013 KH domain NRZ28_19350 PF12072 Domain of unknown function (DUF3552) NRZ28_19355 PF02464 Competence-damaged protein NRZ28_19355 PF00994 Probable molybdopterin binding domain NRZ28_19370 PF07722 Peptidase C26 NRZ28_19380 PF00027 Cyclic nucleotide-binding domain NRZ28_19380 PF13545 Crp-like helix-turn-helix domain NRZ28_19390 PF13419 Haloacid dehalogenase-like hydrolase NRZ28_19395 PF02899 Phage integrase, N-terminal SAM-like domain NRZ28_19395 PF00589 Phage integrase family NRZ28_19405 PF01678 Diaminopimelate epimerase NRZ28_19410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRZ28_19410 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRZ28_19420 PF01491 Frataxin-like domain NRZ28_19425 PF02230 Phospholipase/Carboxylesterase NRZ28_19430 PF01295 Adenylate cyclase, class-I NRZ28_19430 PF12633 Adenylate cyclase NT domain NRZ28_19435 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NRZ28_19435 PF03900 Porphobilinogen deaminase, C-terminal domain NRZ28_19440 PF02602 Uroporphyrinogen-III synthase HemD NRZ28_19445 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NRZ28_19455 PF03692 Putative zinc- or iron-chelating domain NRZ28_19460 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NRZ28_19475 PF00593 TonB dependent receptor NRZ28_19475 PF07715 TonB-dependent Receptor Plug Domain NRZ28_19500 PF01638 HxlR-like helix-turn-helix NRZ28_19505 PF08803 Putative mono-oxygenase ydhR NRZ28_19520 PF06055 Exopolysaccharide synthesis, ExoD NRZ28_19530 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_19550 PF13036 Peptidoglycan-synthase activator LpoB NRZ28_19555 PF13302 Acetyltransferase (GNAT) domain NRZ28_19570 PF04055 Radical SAM superfamily NRZ28_19570 PF06968 Biotin and Thiamin Synthesis associated domain NRZ28_19575 PF05690 Thiazole biosynthesis protein ThiG NRZ28_19585 PF00899 ThiF family NRZ28_19590 PF02581 Thiamine monophosphate synthase NRZ28_19595 PF13667 ThiC-associated domain NRZ28_19595 PF01964 Radical SAM ThiC family NRZ28_19600 PF01117 Aerolysin toxin NRZ28_19600 PF03440 Aerolysin/Pertussis toxin (APT) domain NRZ28_19615 PF00072 Response regulator receiver domain NRZ28_19615 PF00486 Transcriptional regulatory protein, C terminal NRZ28_19620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_19625 PF05525 Branched-chain amino acid transport protein NRZ28_19630 PF08443 RimK-like ATP-grasp domain NRZ28_19630 PF18030 RimK PreATP-grasp domain NRZ28_19635 PF02607 B12 binding domain NRZ28_19635 PF02310 B12 binding domain NRZ28_19635 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRZ28_19635 PF00809 Pterin binding enzyme NRZ28_19635 PF02574 Homocysteine S-methyltransferase NRZ28_19640 PF00999 Sodium/hydrogen exchanger family NRZ28_19655 PF08668 HDOD domain NRZ28_19665 PF04228 Putative neutral zinc metallopeptidase NRZ28_19670 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) NRZ28_19685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_19685 PF08447 PAS fold NRZ28_19685 PF13426 PAS domain NRZ28_19690 PF08678 Rsbr N terminal NRZ28_19690 PF01740 STAS domain NRZ28_19695 PF13581 Histidine kinase-like ATPase domain NRZ28_19700 PF00672 HAMP domain NRZ28_19700 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_19700 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRZ28_19700 PF00072 Response regulator receiver domain NRZ28_19700 PF01627 Hpt domain NRZ28_19700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_19705 PF00072 Response regulator receiver domain NRZ28_19715 PF07690 Major Facilitator Superfamily NRZ28_19720 PF01914 MarC family integral membrane protein NRZ28_19735 PF13580 SIS domain NRZ28_19740 PF00367 phosphotransferase system, EIIB NRZ28_19740 PF02378 Phosphotransferase system, EIIC NRZ28_19755 PF01418 Helix-turn-helix domain, rpiR family NRZ28_19755 PF01380 SIS domain NRZ28_19760 PF01523 Putative modulator of DNA gyrase NRZ28_19765 PF00795 Carbon-nitrogen hydrolase NRZ28_19780 PF13116 Protein of unknown function NRZ28_19780 PF13502 AsmA-like C-terminal region NRZ28_19785 PF10150 Ribonuclease E/G family NRZ28_19785 PF00575 S1 RNA binding domain NRZ28_19790 PF02545 Maf-like protein NRZ28_19795 PF04093 rod shape-determining protein MreD NRZ28_19800 PF04085 rod shape-determining protein MreC NRZ28_19830 PF07963 Prokaryotic N-terminal methylation motif NRZ28_19830 PF14245 Type IV pilin PilA NRZ28_19835 PF07963 Prokaryotic N-terminal methylation motif NRZ28_19835 PF00114 Pilin (bacterial filament) NRZ28_19840 PF07963 Prokaryotic N-terminal methylation motif NRZ28_19850 PF00482 Type II secretion system (T2SS), protein F NRZ28_19855 PF00437 Type II/IV secretion system protein NRZ28_19855 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRZ28_19870 PF03958 Bacterial type II/III secretion system short domain NRZ28_19870 PF00263 Bacterial type II and III secretion system protein NRZ28_19900 PF00563 EAL domain NRZ28_19900 PF17157 Gammaproteobacterial periplasmic sensor domain NRZ28_19900 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_19905 PF12792 CSS motif domain associated with EAL NRZ28_19905 PF00563 EAL domain NRZ28_19910 PF01699 Sodium/calcium exchanger protein NRZ28_19915 PF00221 Aromatic amino acid lyase NRZ28_19920 PF01175 Urocanase Rossmann-like domain NRZ28_19920 PF17392 Urocanase C-terminal domain NRZ28_19920 PF17391 Urocanase N-terminal domain NRZ28_19925 PF00491 Arginase family NRZ28_19930 PF01979 Amidohydrolase family NRZ28_19935 PF00392 Bacterial regulatory proteins, gntR family NRZ28_19935 PF07702 UTRA domain NRZ28_19940 PF00484 Carbonic anhydrase NRZ28_19945 PF04545 Sigma-70, region 4 NRZ28_19945 PF00140 Sigma-70 factor, region 1.2 NRZ28_19945 PF04542 Sigma-70 region 2 NRZ28_19950 PF18075 FtsX extracellular domain NRZ28_19955 PF00005 ABC transporter NRZ28_19960 PF00448 SRP54-type protein, GTPase domain NRZ28_19960 PF02881 SRP54-type protein, helical bundle domain NRZ28_19975 PF07226 Protein of unknown function (DUF1422) NRZ28_19980 PF00440 Bacterial regulatory proteins, tetR family NRZ28_19990 PF13091 PLD-like domain NRZ28_20000 PF01464 Transglycosylase SLT domain NRZ28_20010 PF02416 mttA/Hcf106 family NRZ28_20015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_20015 PF03466 LysR substrate binding domain NRZ28_20020 PF01914 MarC family integral membrane protein NRZ28_20025 PF10678 Protein of unknown function (DUF2492) NRZ28_20030 PF00375 Sodium:dicarboxylate symporter family NRZ28_20040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_20040 PF03466 LysR substrate binding domain NRZ28_20045 PF13533 Biotin-lipoyl like NRZ28_20050 PF07690 Major Facilitator Superfamily NRZ28_20055 PF07947 YhhN family NRZ28_20080 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRZ28_20080 PF00326 Prolyl oligopeptidase family NRZ28_20095 PF00106 short chain dehydrogenase NRZ28_20100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_20100 PF03466 LysR substrate binding domain NRZ28_20105 PF02525 Flavodoxin-like fold NRZ28_20110 PF02254 TrkA-N domain NRZ28_20110 PF00999 Sodium/hydrogen exchanger family NRZ28_20150 PF01196 Ribosomal protein L17 NRZ28_20155 PF01000 RNA polymerase Rpb3/RpoA insert domain NRZ28_20155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NRZ28_20155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NRZ28_20160 PF01479 S4 domain NRZ28_20160 PF00163 Ribosomal protein S4/S9 N-terminal domain NRZ28_20165 PF00411 Ribosomal protein S11 NRZ28_20170 PF00416 Ribosomal protein S13/S18 NRZ28_20175 PF00444 Ribosomal protein L36 NRZ28_20180 PF00344 SecY translocase NRZ28_20185 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NRZ28_20190 PF00327 Ribosomal protein L30p/L7e NRZ28_20195 PF00333 Ribosomal protein S5, N-terminal domain NRZ28_20195 PF03719 Ribosomal protein S5, C-terminal domain NRZ28_20200 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NRZ28_20205 PF00347 Ribosomal protein L6 NRZ28_20210 PF00410 Ribosomal protein S8 NRZ28_20215 PF00253 Ribosomal protein S14p/S29e NRZ28_20220 PF00281 Ribosomal protein L5 NRZ28_20220 PF00673 ribosomal L5P family C-terminus NRZ28_20225 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NRZ28_20225 PF00467 KOW motif NRZ28_20230 PF00238 Ribosomal protein L14p/L23e NRZ28_20235 PF00366 Ribosomal protein S17 NRZ28_20240 PF00831 Ribosomal L29 protein NRZ28_20245 PF00252 Ribosomal protein L16p/L10e NRZ28_20250 PF07650 KH domain NRZ28_20250 PF00189 Ribosomal protein S3, C-terminal domain NRZ28_20255 PF00237 Ribosomal protein L22p/L17e NRZ28_20260 PF00203 Ribosomal protein S19 NRZ28_20265 PF00181 Ribosomal Proteins L2, RNA binding domain NRZ28_20265 PF03947 Ribosomal Proteins L2, C-terminal domain NRZ28_20270 PF00276 Ribosomal protein L23 NRZ28_20275 PF00573 Ribosomal protein L4/L1 family NRZ28_20280 PF00297 Ribosomal protein L3 NRZ28_20285 PF00338 Ribosomal protein S10p/S20e NRZ28_20295 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_20295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_20295 PF00672 HAMP domain NRZ28_20300 PF00486 Transcriptional regulatory protein, C terminal NRZ28_20300 PF00072 Response regulator receiver domain NRZ28_20305 PF01272 Transcription elongation factor, GreA/GreB, C-term NRZ28_20305 PF03449 Transcription elongation factor, N-terminal NRZ28_20310 PF17674 HHH domain NRZ28_20310 PF00575 S1 RNA binding domain NRZ28_20310 PF16921 Tex protein YqgF-like domain NRZ28_20310 PF09371 Tex-like protein N-terminal domain NRZ28_20330 PF00561 alpha/beta hydrolase fold NRZ28_20335 PF00156 Phosphoribosyl transferase domain NRZ28_20340 PF01106 NifU-like domain NRZ28_20340 PF01521 Iron-sulphur cluster biosynthesis NRZ28_20345 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NRZ28_20345 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NRZ28_20350 PF02556 Preprotein translocase subunit SecB NRZ28_20355 PF00581 Rhodanese-like domain NRZ28_20360 PF01676 Metalloenzyme superfamily NRZ28_20360 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NRZ28_20365 PF01551 Peptidase family M23 NRZ28_20375 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRZ28_20375 PF00356 Bacterial regulatory proteins, lacI family NRZ28_20380 PF01081 KDPG and KHG aldolase NRZ28_20385 PF00920 Dehydratase family NRZ28_20390 PF01202 Shikimate kinase NRZ28_20395 PF02447 GntP family permease NRZ28_20400 PF13091 PLD-like domain NRZ28_20405 PF17191 RecG wedge domain NRZ28_20405 PF00271 Helicase conserved C-terminal domain NRZ28_20405 PF00270 DEAD/DEAH box helicase NRZ28_20415 PF09500 Putative thioesterase (yiiD_Cterm) NRZ28_20415 PF00583 Acetyltransferase (GNAT) family NRZ28_20425 PF02580 D-Tyr-tRNA(Tyr) deacylase NRZ28_20435 PF03631 Virulence factor BrkB NRZ28_20440 PF03144 Elongation factor Tu domain 2 NRZ28_20440 PF00009 Elongation factor Tu GTP binding domain NRZ28_20440 PF00679 Elongation factor G C-terminus NRZ28_20445 PF03951 Glutamine synthetase, beta-Grasp domain NRZ28_20445 PF00120 Glutamine synthetase, catalytic domain NRZ28_20455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_20455 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_20455 PF00989 PAS fold NRZ28_20460 PF00158 Sigma-54 interaction domain NRZ28_20460 PF02954 Bacterial regulatory protein, Fis family NRZ28_20460 PF00072 Response regulator receiver domain NRZ28_20465 PF00962 Adenosine/AMP deaminase NRZ28_20470 PF06969 HemN C-terminal domain NRZ28_20470 PF04055 Radical SAM superfamily NRZ28_20475 PF10675 Protein of unknown function (DUF2489) NRZ28_20480 PF04220 Der GTPase activator (YihI) NRZ28_20485 PF00034 Cytochrome c NRZ28_20490 PF01926 50S ribosome-binding GTPase NRZ28_20495 PF07369 Protein of unknown function (DUF1488) NRZ28_20500 PF01488 Shikimate / quinate 5-dehydrogenase NRZ28_20500 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NRZ28_20500 PF08501 Shikimate dehydrogenase substrate binding domain NRZ28_20505 PF01218 Coproporphyrinogen III oxidase NRZ28_20510 PF01300 Telomere recombination NRZ28_20515 PF00731 AIR carboxylase NRZ28_20520 PF01396 Topoisomerase DNA binding C4 zinc finger NRZ28_20525 PF04361 Protein of unknown function (DUF494) NRZ28_20530 PF02481 DNA recombination-mediator protein A NRZ28_20530 PF17782 DprA winged helix domain NRZ28_20540 PF01327 Polypeptide deformylase NRZ28_20545 PF02911 Formyl transferase, C-terminal domain NRZ28_20545 PF00551 Formyl transferase NRZ28_20550 PF01189 16S rRNA methyltransferase RsmB/F NRZ28_20550 PF01029 NusB family NRZ28_20555 PF02080 TrkA-C domain NRZ28_20555 PF02254 TrkA-N domain NRZ28_20560 PF02386 Cation transport protein NRZ28_20565 PF02646 RmuC family NRZ28_20580 PF02082 Transcriptional regulator NRZ28_20585 PF00294 pfkB family carbohydrate kinase NRZ28_20590 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRZ28_20590 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRZ28_20595 PF00117 Glutamine amidotransferase class-I NRZ28_20595 PF00958 GMP synthase C terminal domain NRZ28_20595 PF02540 NAD synthase NRZ28_20600 PF00171 Aldehyde dehydrogenase family NRZ28_20605 PF00202 Aminotransferase class-III NRZ28_20610 PF01381 Helix-turn-helix NRZ28_20610 PF07883 Cupin domain NRZ28_20615 PF00171 Aldehyde dehydrogenase family NRZ28_20625 PF00892 EamA-like transporter family NRZ28_20630 PF12833 Helix-turn-helix domain NRZ28_20635 PF01810 LysE type translocator NRZ28_20640 PF00690 Cation transporter/ATPase, N-terminus NRZ28_20640 PF00689 Cation transporting ATPase, C-terminus NRZ28_20645 PF04143 Sulphur transport NRZ28_20660 PF06206 CpeT/CpcT family (DUF1001) NRZ28_20690 PF14001 YdfZ protein NRZ28_20705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_20705 PF03466 LysR substrate binding domain NRZ28_20720 PF00580 UvrD/REP helicase N-terminal domain NRZ28_20720 PF13361 UvrD-like helicase C-terminal domain NRZ28_20725 PF02608 ABC transporter substrate-binding protein PnrA-like NRZ28_20730 PF00005 ABC transporter NRZ28_20735 PF02653 Branched-chain amino acid transport system / permease component NRZ28_20740 PF02653 Branched-chain amino acid transport system / permease component NRZ28_20745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_20745 PF03466 LysR substrate binding domain NRZ28_20750 PF08240 Alcohol dehydrogenase GroES-like domain NRZ28_20750 PF00107 Zinc-binding dehydrogenase NRZ28_20755 PF00756 Putative esterase NRZ28_20765 PF12867 DinB superfamily NRZ28_20765 PF03781 Sulfatase-modifying factor enzyme 1 NRZ28_20770 PF13593 SBF-like CPA transporter family (DUF4137) NRZ28_20775 PF13520 Amino acid permease NRZ28_20780 PF01588 Putative tRNA binding domain NRZ28_20785 PF13520 Amino acid permease NRZ28_20790 PF04074 YhcH/YjgK/YiaL NRZ28_20795 PF00703 Glycosyl hydrolases family 2 NRZ28_20795 PF02929 Beta galactosidase small chain NRZ28_20795 PF16353 Domain of unknown function(DUF4981) NRZ28_20795 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRZ28_20795 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRZ28_20800 PF00356 Bacterial regulatory proteins, lacI family NRZ28_20835 PF00132 Bacterial transferase hexapeptide (six repeats) NRZ28_20840 PF01367 5'-3' exonuclease, C-terminal SAM fold NRZ28_20840 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRZ28_20840 PF00476 DNA polymerase family A NRZ28_20840 PF01612 3'-5' exonuclease NRZ28_20850 PF06005 Cell division protein ZapB NRZ28_20860 PF00132 Bacterial transferase hexapeptide (six repeats) NRZ28_20860 PF06426 Serine acetyltransferase, N-terminal NRZ28_20865 PF01545 Cation efflux family NRZ28_20865 PF16916 Dimerisation domain of Zinc Transporter NRZ28_20870 PF00072 Response regulator receiver domain NRZ28_20870 PF00486 Transcriptional regulatory protein, C terminal NRZ28_20875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_20875 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_20875 PF00672 HAMP domain NRZ28_20875 PF16527 Two-component sensor protein CpxA, periplasmic domain NRZ28_20880 PF00588 SpoU rRNA Methylase family NRZ28_20885 PF01554 MatE NRZ28_20890 PF02630 SCO1/SenC NRZ28_20900 PF01726 LexA DNA binding domain NRZ28_20900 PF00717 Peptidase S24-like NRZ28_20905 PF01553 Acyltransferase NRZ28_20910 PF01040 UbiA prenyltransferase family NRZ28_20915 PF04345 Chorismate lyase NRZ28_20920 PF03748 Flagellar basal body-associated protein FliL NRZ28_20940 PF08240 Alcohol dehydrogenase GroES-like domain NRZ28_20940 PF00107 Zinc-binding dehydrogenase NRZ28_20945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRZ28_20945 PF00356 Bacterial regulatory proteins, lacI family NRZ28_20950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRZ28_20960 PF03611 PTS system sugar-specific permease component NRZ28_20965 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NRZ28_20970 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRZ28_20975 PF00535 Glycosyl transferase family 2 NRZ28_20980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRZ28_20985 PF01467 Cytidylyltransferase-like NRZ28_20990 PF04393 Protein of unknown function (DUF535) NRZ28_20995 PF06827 Zinc finger found in FPG and IleRS NRZ28_20995 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NRZ28_20995 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NRZ28_21005 PF00471 Ribosomal protein L33 NRZ28_21010 PF00830 Ribosomal L28 family NRZ28_21015 PF04002 RadC-like JAB domain NRZ28_21020 PF04127 DNA / pantothenate metabolism flavoprotein NRZ28_21020 PF02441 Flavoprotein NRZ28_21025 PF00692 dUTPase NRZ28_21030 PF00440 Bacterial regulatory proteins, tetR family NRZ28_21035 PF00924 Mechanosensitive ion channel NRZ28_21035 PF05552 Conserved TM helix NRZ28_21045 PF00342 Phosphoglucose isomerase NRZ28_21055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRZ28_21055 PF03466 LysR substrate binding domain NRZ28_21095 PF12724 Flavodoxin domain NRZ28_21100 PF02386 Cation transport protein NRZ28_21105 PF01205 Uncharacterized protein family UPF0029 NRZ28_21105 PF09186 Domain of unknown function (DUF1949) NRZ28_21110 PF00557 Metallopeptidase family M24 NRZ28_21115 PF13193 AMP-binding enzyme C-terminal domain NRZ28_21115 PF00501 AMP-binding enzyme NRZ28_21120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRZ28_21120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRZ28_21120 PF00378 Enoyl-CoA hydratase/isomerase NRZ28_21125 PF02803 Thiolase, C-terminal domain NRZ28_21125 PF00108 Thiolase, N-terminal domain NRZ28_21130 PF00072 Response regulator receiver domain NRZ28_21130 PF00486 Transcriptional regulatory protein, C terminal NRZ28_21135 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_21135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_21135 PF00672 HAMP domain NRZ28_21140 PF01547 Bacterial extracellular solute-binding protein NRZ28_21150 PF01206 Sulfurtransferase TusA NRZ28_21155 PF01042 Endoribonuclease L-PSP NRZ28_21160 PF00691 OmpA family NRZ28_21160 PF13488 Glycine zipper NRZ28_21165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRZ28_21165 PF00672 HAMP domain NRZ28_21165 PF02743 Cache domain NRZ28_21170 PF03352 Methyladenine glycosylase NRZ28_21175 PF02091 Glycyl-tRNA synthetase alpha subunit NRZ28_21180 PF05746 DALR anticodon binding domain NRZ28_21180 PF02092 Glycyl-tRNA synthetase beta subunit NRZ28_21195 PF01202 Shikimate kinase NRZ28_21215 PF03222 Tryptophan/tyrosine permease family NRZ28_21220 PF12801 4Fe-4S binding domain NRZ28_21225 PF07702 UTRA domain NRZ28_21225 PF00392 Bacterial regulatory proteins, gntR family NRZ28_21230 PF02378 Phosphotransferase system, EIIC NRZ28_21230 PF00367 phosphotransferase system, EIIB NRZ28_21235 PF02056 Family 4 glycosyl hydrolase NRZ28_21235 PF11975 Family 4 glycosyl hydrolase C-terminal domain NRZ28_21240 PF00356 Bacterial regulatory proteins, lacI family NRZ28_21245 PF13458 Periplasmic binding protein NRZ28_21250 PF02653 Branched-chain amino acid transport system / permease component NRZ28_21255 PF11862 Domain of unknown function (DUF3382) NRZ28_21255 PF02653 Branched-chain amino acid transport system / permease component NRZ28_21260 PF12399 Branched-chain amino acid ATP-binding cassette transporter NRZ28_21260 PF00005 ABC transporter NRZ28_21265 PF00005 ABC transporter NRZ28_21280 PF00581 Rhodanese-like domain NRZ28_21285 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NRZ28_21285 PF01694 Rhomboid family NRZ28_21290 PF12262 Bacterial virulence factor lipase N-terminal NRZ28_21295 PF04380 Membrane fusogenic activity NRZ28_21300 PF00175 Oxidoreductase NAD-binding domain NRZ28_21305 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NRZ28_21315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRZ28_21315 PF07498 Rho termination factor, N-terminal domain NRZ28_21315 PF07497 Rho termination factor, RNA-binding domain NRZ28_21320 PF00085 Thioredoxin NRZ28_21325 PF00271 Helicase conserved C-terminal domain NRZ28_21325 PF00270 DEAD/DEAH box helicase NRZ28_21330 PF02541 Ppx/GppA phosphatase family NRZ28_21340 PF04445 Putative SAM-dependent methyltransferase NRZ28_21345 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRZ28_21350 PF00563 EAL domain NRZ28_21350 PF00990 Diguanylate cyclase, GGDEF domain NRZ28_21350 PF03707 Bacterial signalling protein N terminal repeat NRZ28_21355 PF01432 Peptidase family M3 NRZ28_21365 PF18416 N-acetylglucosamine binding protein domain 2 NRZ28_21365 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NRZ28_21370 PF00490 Delta-aminolevulinic acid dehydratase NRZ28_21375 PF01026 TatD related DNase NRZ28_21380 PF00902 Sec-independent protein translocase protein (TatC) NRZ28_21385 PF02416 mttA/Hcf106 family NRZ28_21390 PF02416 mttA/Hcf106 family NRZ28_21395 PF03109 ABC1 family NRZ28_21400 PF02036 SCP-2 sterol transfer family NRZ28_21405 PF01209 ubiE/COQ5 methyltransferase family NRZ28_21410 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NRZ28_21415 PF07969 Amidohydrolase family NRZ28_21455 PF03544 Gram-negative bacterial TonB protein C-terminal NRZ28_21460 PF02472 Biopolymer transport protein ExbD/TolR NRZ28_21465 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_21470 PF01618 MotA/TolQ/ExbB proton channel family NRZ28_21480 PF03472 Autoinducer binding domain NRZ28_21480 PF00196 Bacterial regulatory proteins, luxR family NRZ28_21485 PF01380 SIS domain NRZ28_21490 PF00455 DeoR C terminal sensor domain NRZ28_21490 PF08220 DeoR-like helix-turn-helix domain NRZ28_21495 PF00072 Response regulator receiver domain NRZ28_21495 PF00486 Transcriptional regulatory protein, C terminal NRZ28_21500 PF00672 HAMP domain NRZ28_21500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRZ28_21500 PF00512 His Kinase A (phospho-acceptor) domain NRZ28_21505 PF00905 Penicillin binding protein transpeptidase domain NRZ28_21510 PF06123 Inner membrane protein CreD NRZ28_21515 PF14602 Hexapeptide repeat of succinyl-transferase NRZ28_21515 PF12804 MobA-like NTP transferase domain NRZ28_21515 PF00132 Bacterial transferase hexapeptide (six repeats) NRZ28_21520 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NRZ28_21520 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NRZ28_21525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRZ28_21525 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRZ28_21530 PF00231 ATP synthase NRZ28_21535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRZ28_21535 PF00306 ATP synthase alpha/beta chain, C terminal domain NRZ28_21535 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRZ28_21540 PF00213 ATP synthase delta (OSCP) subunit NRZ28_21545 PF00430 ATP synthase B/B' CF(0) NRZ28_21550 PF00137 ATP synthase subunit C NRZ28_21555 PF00119 ATP synthase A chain NRZ28_21565 PF17762 HTH domain found in ParB protein NRZ28_21565 PF02195 ParB-like nuclease domain NRZ28_21570 PF13614 AAA domain NRZ28_21575 PF02527 rRNA small subunit methyltransferase G NRZ28_21580 PF01134 Glucose inhibited division protein A NRZ28_21580 PF13932 GidA associated domain NRZ28_21585 PF00258 Flavodoxin NRZ28_21590 PF07715 TonB-dependent Receptor Plug Domain NRZ28_21590 PF00593 TonB dependent receptor NRZ28_21595 PF00005 ABC transporter NRZ28_21600 PF00005 ABC transporter NRZ28_21610 PF01032 FecCD transport family NRZ28_21615 PF01926 50S ribosome-binding GTPase NRZ28_21615 PF12631 MnmE helical domain NRZ28_21615 PF10396 GTP-binding protein TrmE N-terminus NRZ28_21620 PF02096 60Kd inner membrane protein NRZ28_21620 PF14849 YidC periplasmic domain NRZ28_21625 PF01809 Putative membrane protein insertion efficiency factor NRZ28_21630 PF00825 Ribonuclease P NRZ28_21635 PF00468 Ribosomal protein L34 NRZ28_21640 PF00005 ABC transporter NRZ28_21645 PF00528 Binding-protein-dependent transport system inner membrane component NRZ28_21650 PF00497 Bacterial extracellular solute-binding proteins, family 3