locus-tag class description AhyD4_00005 PF11638 DnaA N-terminal domain AhyD4_00005 PF08299 Bacterial dnaA protein helix-turn-helix AhyD4_00005 PF00308 Bacterial dnaA protein AhyD4_00010 PF02767 DNA polymerase III beta subunit, central domain AhyD4_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AhyD4_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AhyD4_00015 PF02463 RecF/RecN/SMC N terminal domain AhyD4_00020 PF00204 DNA gyrase B AhyD4_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AhyD4_00020 PF18053 DNA gyrase B subunit insert domain AhyD4_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_00020 PF01751 Toprim domain AhyD4_00030 PF08279 HTH domain AhyD4_00030 PF13280 WYL domain AhyD4_00035 PF00011 Hsp20/alpha crystallin family AhyD4_00040 PF00011 Hsp20/alpha crystallin family AhyD4_00045 PF00155 Aminotransferase class I and II AhyD4_00060 PF07690 Major Facilitator Superfamily AhyD4_00065 PF00486 Transcriptional regulatory protein, C terminal AhyD4_00065 PF00072 Response regulator receiver domain AhyD4_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain AhyD4_00070 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_00070 PF13492 GAF domain AhyD4_00070 PF13493 Domain of unknown function (DUF4118) AhyD4_00075 PF02669 K+-transporting ATPase, c chain AhyD4_00085 PF03814 Potassium-transporting ATPase A subunit AhyD4_00090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AhyD4_00090 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_00095 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_00095 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_00100 PF00873 AcrB/AcrD/AcrF family AhyD4_00105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_00110 PF00440 Bacterial regulatory proteins, tetR family AhyD4_00140 PF02887 Pyruvate kinase, alpha/beta domain AhyD4_00140 PF00224 Pyruvate kinase, barrel domain AhyD4_00145 PF07690 Major Facilitator Superfamily AhyD4_00155 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_00155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_00155 PF00672 HAMP domain AhyD4_00160 PF02954 Bacterial regulatory protein, Fis family AhyD4_00160 PF00072 Response regulator receiver domain AhyD4_00160 PF14532 Sigma-54 interaction domain AhyD4_00175 PF12146 Serine aminopeptidase, S33 AhyD4_00180 PF00132 Bacterial transferase hexapeptide (six repeats) AhyD4_00185 PF12105 SpoU, rRNA methylase, C-terminal AhyD4_00185 PF00588 SpoU rRNA Methylase family AhyD4_00190 PF13291 ACT domain AhyD4_00190 PF04607 Region found in RelA / SpoT proteins AhyD4_00190 PF02824 TGS domain AhyD4_00195 PF01192 RNA polymerase Rpb6 AhyD4_00200 PF00625 Guanylate kinase AhyD4_00205 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AhyD4_00220 PF00892 EamA-like transporter family AhyD4_00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_00235 PF03466 LysR substrate binding domain AhyD4_00240 PF00579 tRNA synthetases class I (W and Y) AhyD4_00245 PF00582 Universal stress protein family AhyD4_00250 PF07055 Enoyl reductase FAD binding domain AhyD4_00250 PF12241 Trans-2-enoyl-CoA reductase catalytic region AhyD4_00250 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AhyD4_00255 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_00260 PF00210 Ferritin-like domain AhyD4_00270 PF07690 Major Facilitator Superfamily AhyD4_00275 PF01810 LysE type translocator AhyD4_00290 PF16967 E-set like domain AhyD4_00290 PF15976 CS1-pili formation C-terminal AhyD4_00295 PF18649 EcpB C-terminal domain AhyD4_00300 PF16449 Fimbrillin MatB AhyD4_00305 PF00196 Bacterial regulatory proteins, luxR family AhyD4_00305 PF00072 Response regulator receiver domain AhyD4_00310 PF01627 Hpt domain AhyD4_00310 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_00310 PF00072 Response regulator receiver domain AhyD4_00310 PF00989 PAS fold AhyD4_00310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_00310 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_00320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_00320 PF07694 5TMR of 5TMR-LYT AhyD4_00320 PF06580 Histidine kinase AhyD4_00325 PF04397 LytTr DNA-binding domain AhyD4_00325 PF00072 Response regulator receiver domain AhyD4_00330 PF07690 Major Facilitator Superfamily AhyD4_00335 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AhyD4_00335 PF02222 ATP-grasp domain AhyD4_00340 PF00731 AIR carboxylase AhyD4_00355 PF03466 LysR substrate binding domain AhyD4_00355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_00360 PF00593 TonB dependent receptor AhyD4_00360 PF07715 TonB-dependent Receptor Plug Domain AhyD4_00365 PF01177 Asp/Glu/Hydantoin racemase AhyD4_00420 PF01695 IstB-like ATP binding protein AhyD4_00425 PF00665 Integrase core domain AhyD4_00425 PF02796 Helix-turn-helix domain of resolvase AhyD4_00470 PF04002 RadC-like JAB domain AhyD4_00515 PF05930 Prophage CP4-57 regulatory protein (AlpA) AhyD4_00520 PF00816 H-NS histone family AhyD4_00535 PF03472 Autoinducer binding domain AhyD4_00535 PF00196 Bacterial regulatory proteins, luxR family AhyD4_00540 PF05638 Type VI secretion system effector, Hcp AhyD4_00545 PF04717 Type VI secretion system, phage-baseplate injector AhyD4_00585 PF15608 PELOTA RNA binding domain AhyD4_00585 PF11202 Phosphoribosyl transferase (PRTase) AhyD4_00605 PF02342 TerD domain AhyD4_00610 PF02342 TerD domain AhyD4_00615 PF05099 Tellurite resistance protein TerB AhyD4_00620 PF03741 Integral membrane protein TerC family AhyD4_00625 PF02342 TerD domain AhyD4_00630 PF02342 TerD domain AhyD4_00640 PF02342 TerD domain AhyD4_00645 PF00589 Phage integrase family AhyD4_00645 PF13356 Arm DNA-binding domain AhyD4_00650 PF00899 ThiF family AhyD4_00655 PF02657 Fe-S metabolism associated domain AhyD4_00660 PF00266 Aminotransferase class-V AhyD4_00665 PF00580 UvrD/REP helicase N-terminal domain AhyD4_00665 PF13361 UvrD-like helicase C-terminal domain AhyD4_00670 PF00563 EAL domain AhyD4_00670 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_00670 PF03707 Bacterial signalling protein N terminal repeat AhyD4_00675 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AhyD4_00680 PF08240 Alcohol dehydrogenase GroES-like domain AhyD4_00680 PF00107 Zinc-binding dehydrogenase AhyD4_00685 PF00155 Aminotransferase class I and II AhyD4_00690 PF00440 Bacterial regulatory proteins, tetR family AhyD4_00690 PF08360 QacR-like protein, C-terminal region AhyD4_00695 PF01370 NAD dependent epimerase/dehydratase family AhyD4_00710 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) AhyD4_00730 PF08340 Domain of unknown function (DUF1732) AhyD4_00730 PF03755 YicC-like family, N-terminal region AhyD4_00735 PF03725 3' exoribonuclease family, domain 2 AhyD4_00735 PF01138 3' exoribonuclease family, domain 1 AhyD4_00740 PF00156 Phosphoribosyl transferase domain AhyD4_00745 PF00403 Heavy-metal-associated domain AhyD4_00750 PF00376 MerR family regulatory protein AhyD4_00750 PF09278 MerR, DNA binding AhyD4_00755 PF00360 Phytochrome region AhyD4_00755 PF01590 GAF domain AhyD4_00755 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_00755 PF00563 EAL domain AhyD4_00760 PF06288 Protein of unknown function (DUF1040) AhyD4_00765 PF13746 4Fe-4S dicluster domain AhyD4_00765 PF12801 4Fe-4S binding domain AhyD4_00765 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AhyD4_00770 PF01636 Phosphotransferase enzyme family AhyD4_00775 PF01323 DSBA-like thioredoxin domain AhyD4_00780 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_00785 PF00005 ABC transporter AhyD4_00795 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AhyD4_00795 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AhyD4_00800 PF00857 Isochorismatase family AhyD4_00810 PF04463 Protein of unknown function (DUF523) AhyD4_00815 PF01553 Acyltransferase AhyD4_00820 PF01553 Acyltransferase AhyD4_00825 PF01078 Magnesium chelatase, subunit ChlI AhyD4_00825 PF13335 Magnesium chelatase, subunit ChlI C-terminal AhyD4_00830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AhyD4_00830 PF00205 Thiamine pyrophosphate enzyme, central domain AhyD4_00830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AhyD4_00840 PF01063 Amino-transferase class IV AhyD4_00845 PF00920 Dehydratase family AhyD4_00850 PF00291 Pyridoxal-phosphate dependent enzyme AhyD4_00850 PF00585 C-terminal regulatory domain of Threonine dehydratase AhyD4_00855 PF00691 OmpA family AhyD4_00855 PF01389 OmpA-like transmembrane domain AhyD4_00865 PF18074 Primosomal protein N C-terminal domain AhyD4_00865 PF00271 Helicase conserved C-terminal domain AhyD4_00865 PF17764 3′ DNA-binding domain (3′BD) AhyD4_00865 PF00270 DEAD/DEAH box helicase AhyD4_00865 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AhyD4_00870 PF01197 Ribosomal protein L31 AhyD4_00875 PF11066 Protein of unknown function (DUF2867) AhyD4_00875 PF13460 NAD(P)H-binding AhyD4_00880 PF03949 Malic enzyme, NAD binding domain AhyD4_00880 PF00390 Malic enzyme, N-terminal domain AhyD4_00890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_00890 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_00890 PF00672 HAMP domain AhyD4_00895 PF00486 Transcriptional regulatory protein, C terminal AhyD4_00895 PF00072 Response regulator receiver domain AhyD4_00900 PF05958 tRNA (Uracil-5-)-methyltransferase AhyD4_00915 PF02903 Alpha amylase, N-terminal ig-like domain AhyD4_00915 PF00128 Alpha amylase, catalytic domain AhyD4_00930 PF00012 Hsp70 protein AhyD4_00935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AhyD4_00935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AhyD4_00940 PF05981 CreA protein AhyD4_00955 PF01258 Prokaryotic dksA/traR C4-type zinc finger AhyD4_00960 PF00120 Glutamine synthetase, catalytic domain AhyD4_00965 PF00202 Aminotransferase class-III AhyD4_00970 PF13416 Bacterial extracellular solute-binding protein AhyD4_00975 PF13416 Bacterial extracellular solute-binding protein AhyD4_00980 PF08402 TOBE domain AhyD4_00980 PF00005 ABC transporter AhyD4_00985 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_00990 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_00995 PF03473 MOSC domain AhyD4_00995 PF03475 3-alpha domain AhyD4_01010 PF03061 Thioesterase superfamily AhyD4_01015 PF09382 RQC domain AhyD4_01015 PF16124 RecQ zinc-binding AhyD4_01015 PF00570 HRDC domain AhyD4_01015 PF00271 Helicase conserved C-terminal domain AhyD4_01015 PF00270 DEAD/DEAH box helicase AhyD4_01020 PF00034 Cytochrome c AhyD4_01025 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AhyD4_01035 PF02592 Putative vitamin uptake transporter AhyD4_01040 PF03737 Aldolase/RraA AhyD4_01045 PF00672 HAMP domain AhyD4_01045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_01050 PF00571 CBS domain AhyD4_01050 PF01769 Divalent cation transporter AhyD4_01050 PF03448 MgtE intracellular N domain AhyD4_01055 PF10414 Sirohaem synthase dimerisation region AhyD4_01055 PF14824 Sirohaem biosynthesis protein central AhyD4_01055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AhyD4_01060 PF01226 Formate/nitrite transporter AhyD4_01065 PF13806 Rieske-like [2Fe-2S] domain AhyD4_01070 PF04324 BFD-like [2Fe-2S] binding domain AhyD4_01070 PF18267 Rubredoxin NAD+ reductase C-terminal domain AhyD4_01070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AhyD4_01070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AhyD4_01070 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_01075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_01075 PF03466 LysR substrate binding domain AhyD4_01080 PF07690 Major Facilitator Superfamily AhyD4_01085 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_01085 PF07724 AAA domain (Cdc48 subfamily) AhyD4_01085 PF10431 C-terminal, D2-small domain, of ClpB protein AhyD4_01090 PF00227 Proteasome subunit AhyD4_01100 PF00750 tRNA synthetases class I (R) AhyD4_01100 PF05746 DALR anticodon binding domain AhyD4_01100 PF03485 Arginyl tRNA synthetase N terminal domain AhyD4_01110 PF04545 Sigma-70, region 4 AhyD4_01110 PF04542 Sigma-70 region 2 AhyD4_01115 PF12973 ChrR Cupin-like domain AhyD4_01120 PF02673 Bacitracin resistance protein BacA AhyD4_01125 PF00248 Aldo/keto reductase family AhyD4_01130 PF01263 Aldose 1-epimerase AhyD4_01135 PF10509 Galactokinase galactose-binding signature AhyD4_01135 PF08544 GHMP kinases C terminal AhyD4_01135 PF00288 GHMP kinases N terminal domain AhyD4_01140 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AhyD4_01140 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AhyD4_01145 PF16363 GDP-mannose 4,6 dehydratase AhyD4_01150 PF00356 Bacterial regulatory proteins, lacI family AhyD4_01155 PF16353 Domain of unknown function(DUF4981) AhyD4_01155 PF00703 Glycosyl hydrolases family 2 AhyD4_01155 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AhyD4_01155 PF02837 Glycosyl hydrolases family 2, sugar binding domain AhyD4_01155 PF02929 Beta galactosidase small chain AhyD4_01160 PF13407 Periplasmic binding protein domain AhyD4_01165 PF00005 ABC transporter AhyD4_01170 PF02653 Branched-chain amino acid transport system / permease component AhyD4_01175 PF02743 Cache domain AhyD4_01175 PF00672 HAMP domain AhyD4_01175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_01195 PF00696 Amino acid kinase family AhyD4_01200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AhyD4_01200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AhyD4_01205 PF03606 C4-dicarboxylate anaerobic carrier AhyD4_01210 PF01316 Arginine repressor, DNA binding domain AhyD4_01210 PF02863 Arginine repressor, C-terminal domain AhyD4_01215 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AhyD4_01215 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AhyD4_01220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AhyD4_01220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AhyD4_01235 PF02666 Phosphatidylserine decarboxylase AhyD4_01240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_01240 PF00672 HAMP domain AhyD4_01240 PF02743 Cache domain AhyD4_01245 PF08212 Lipocalin-like domain AhyD4_01250 PF06719 AraC-type transcriptional regulator N-terminus AhyD4_01250 PF12833 Helix-turn-helix domain AhyD4_01255 PF00465 Iron-containing alcohol dehydrogenase AhyD4_01260 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AhyD4_01260 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AhyD4_01260 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AhyD4_01265 PF02233 NAD(P) transhydrogenase beta subunit AhyD4_01275 PF08348 YheO-like PAS domain AhyD4_01275 PF13309 HTH domain AhyD4_01280 PF03313 Serine dehydratase alpha chain AhyD4_01285 PF00375 Sodium:dicarboxylate symporter family AhyD4_01290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AhyD4_01290 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_01295 PF13525 Outer membrane lipoprotein AhyD4_01300 PF00849 RNA pseudouridylate synthase AhyD4_01300 PF01479 S4 domain AhyD4_01310 PF17871 AAA lid domain AhyD4_01310 PF02861 Clp amino terminal domain, pathogenicity island component AhyD4_01310 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_01310 PF10431 C-terminal, D2-small domain, of ClpB protein AhyD4_01310 PF07724 AAA domain (Cdc48 subfamily) AhyD4_01320 PF03590 Aspartate-ammonia ligase AhyD4_01325 PF01037 Lrp/AsnC ligand binding domain AhyD4_01335 PF10063 Uncharacterized integral membrane protein (DUF2301) AhyD4_01340 PF00571 CBS domain AhyD4_01340 PF00478 IMP dehydrogenase / GMP reductase domain AhyD4_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_01355 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_01365 PF00072 Response regulator receiver domain AhyD4_01365 PF00158 Sigma-54 interaction domain AhyD4_01370 PF06496 Protein of unknown function (DUF1097) AhyD4_01375 PF00174 Oxidoreductase molybdopterin binding domain AhyD4_01380 PF01794 Ferric reductase like transmembrane component AhyD4_01395 PF00486 Transcriptional regulatory protein, C terminal AhyD4_01395 PF00072 Response regulator receiver domain AhyD4_01400 PF08918 PhoQ Sensor AhyD4_01400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_01410 PF00384 Molybdopterin oxidoreductase AhyD4_01410 PF18364 Molybdopterin oxidoreductase N-terminal domain AhyD4_01410 PF01568 Molydopterin dinucleotide binding domain AhyD4_01415 PF03264 NapC/NirT cytochrome c family, N-terminal region AhyD4_01420 PF01131 DNA topoisomerase AhyD4_01420 PF01751 Toprim domain AhyD4_01435 PF12852 Cupin AhyD4_01435 PF12833 Helix-turn-helix domain AhyD4_01440 PF02386 Cation transport protein AhyD4_01445 PF02254 TrkA-N domain AhyD4_01445 PF02080 TrkA-C domain AhyD4_01450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AhyD4_01450 PF01565 FAD binding domain AhyD4_01455 PF08279 HTH domain AhyD4_01455 PF03099 Biotin/lipoate A/B protein ligase family AhyD4_01455 PF02237 Biotin protein ligase C terminal domain AhyD4_01460 PF00485 Phosphoribulokinase / Uridine kinase family AhyD4_01475 PF00009 Elongation factor Tu GTP binding domain AhyD4_01475 PF03143 Elongation factor Tu C-terminal domain AhyD4_01475 PF03144 Elongation factor Tu domain 2 AhyD4_01485 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AhyD4_01490 PF02357 Transcription termination factor nusG AhyD4_01490 PF00467 KOW motif AhyD4_01495 PF03946 Ribosomal protein L11, N-terminal domain AhyD4_01495 PF00298 Ribosomal protein L11, RNA binding domain AhyD4_01500 PF00687 Ribosomal protein L1p/L10e family AhyD4_01505 PF00466 Ribosomal protein L10 AhyD4_01510 PF00542 Ribosomal protein L7/L12 C-terminal domain AhyD4_01510 PF16320 Ribosomal protein L7/L12 dimerisation domain AhyD4_01515 PF04561 RNA polymerase Rpb2, domain 2 AhyD4_01515 PF04560 RNA polymerase Rpb2, domain 7 AhyD4_01515 PF00562 RNA polymerase Rpb2, domain 6 AhyD4_01515 PF10385 RNA polymerase beta subunit external 1 domain AhyD4_01515 PF04563 RNA polymerase beta subunit AhyD4_01515 PF04565 RNA polymerase Rpb2, domain 3 AhyD4_01520 PF04983 RNA polymerase Rpb1, domain 3 AhyD4_01520 PF04997 RNA polymerase Rpb1, domain 1 AhyD4_01520 PF00623 RNA polymerase Rpb1, domain 2 AhyD4_01520 PF05000 RNA polymerase Rpb1, domain 4 AhyD4_01520 PF04998 RNA polymerase Rpb1, domain 5 AhyD4_01530 PF13309 HTH domain AhyD4_01530 PF08348 YheO-like PAS domain AhyD4_01535 PF01042 Endoribonuclease L-PSP AhyD4_01540 PF02635 DsrE/DsrF-like family AhyD4_01545 PF02635 DsrE/DsrF-like family AhyD4_01550 PF04077 DsrH like protein AhyD4_01560 PF00177 Ribosomal protein S7p/S5e AhyD4_01565 PF03764 Elongation factor G, domain IV AhyD4_01565 PF00009 Elongation factor Tu GTP binding domain AhyD4_01565 PF14492 Elongation Factor G, domain II AhyD4_01565 PF03144 Elongation factor Tu domain 2 AhyD4_01565 PF00679 Elongation factor G C-terminus AhyD4_01570 PF00009 Elongation factor Tu GTP binding domain AhyD4_01570 PF03143 Elongation factor Tu C-terminal domain AhyD4_01570 PF03144 Elongation factor Tu domain 2 AhyD4_01615 PF00860 Permease family AhyD4_01620 PF02733 Dak1 domain AhyD4_01625 PF02734 DAK2 domain AhyD4_01630 PF00391 PEP-utilising enzyme, mobile domain AhyD4_01630 PF03610 PTS system fructose IIA component AhyD4_01630 PF05524 PEP-utilising enzyme, N-terminal AhyD4_01630 PF00381 PTS HPr component phosphorylation site AhyD4_01635 PF00465 Iron-containing alcohol dehydrogenase AhyD4_01640 PF00158 Sigma-54 interaction domain AhyD4_01640 PF00989 PAS fold AhyD4_01640 PF02954 Bacterial regulatory protein, Fis family AhyD4_01645 PF03466 LysR substrate binding domain AhyD4_01645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_01650 PF04371 Porphyromonas-type peptidyl-arginine deiminase AhyD4_01655 PF00106 short chain dehydrogenase AhyD4_01660 PF01594 AI-2E family transporter AhyD4_01665 PF00293 NUDIX domain AhyD4_01690 PF00199 Catalase AhyD4_01690 PF06628 Catalase-related immune-responsive AhyD4_01695 PF00583 Acetyltransferase (GNAT) family AhyD4_01715 PF17158 Membrane-associated sensor, integral membrane domain AhyD4_01715 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_01725 PF00005 ABC transporter AhyD4_01725 PF08402 TOBE domain AhyD4_01735 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_01750 PF07702 UTRA domain AhyD4_01750 PF00392 Bacterial regulatory proteins, gntR family AhyD4_01760 PF03466 LysR substrate binding domain AhyD4_01760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_01770 PF17954 Quercetinase C-terminal cupin domain AhyD4_01770 PF02678 Pirin AhyD4_01775 PF07681 DoxX AhyD4_01780 PF17946 RecC C-terminal domain AhyD4_01785 PF12705 PD-(D/E)XK nuclease superfamily AhyD4_01785 PF00580 UvrD/REP helicase N-terminal domain AhyD4_01785 PF13361 UvrD-like helicase C-terminal domain AhyD4_01790 PF13538 UvrD-like helicase C-terminal domain AhyD4_01795 PF02463 RecF/RecN/SMC N terminal domain AhyD4_01800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AhyD4_01810 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_01810 PF17151 Periplasmic sensor domain AhyD4_01835 PF00072 Response regulator receiver domain AhyD4_01835 PF00486 Transcriptional regulatory protein, C terminal AhyD4_01840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_01840 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_01840 PF00672 HAMP domain AhyD4_01845 PF01590 GAF domain AhyD4_01845 PF00563 EAL domain AhyD4_01845 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_01845 PF00360 Phytochrome region AhyD4_01850 PF07715 TonB-dependent Receptor Plug Domain AhyD4_01850 PF00593 TonB dependent receptor AhyD4_01855 PF00313 'Cold-shock' DNA-binding domain AhyD4_01865 PF16916 Dimerisation domain of Zinc Transporter AhyD4_01865 PF01545 Cation efflux family AhyD4_01875 PF00436 Single-strand binding protein family AhyD4_01880 PF00196 Bacterial regulatory proteins, luxR family AhyD4_01885 PF17760 UvrA interaction domain AhyD4_01885 PF00005 ABC transporter AhyD4_01885 PF17755 UvrA DNA-binding domain AhyD4_01895 PF03922 OmpW family AhyD4_01900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_01900 PF00672 HAMP domain AhyD4_01915 PF02219 Methylenetetrahydrofolate reductase AhyD4_01925 PF03594 Benzoate membrane transport protein AhyD4_01930 PF01381 Helix-turn-helix AhyD4_01930 PF07883 Cupin domain AhyD4_01960 PF04363 Protein of unknown function (DUF496) AhyD4_01970 PF04751 Protein of unknown function (DUF615) AhyD4_01975 PF01523 Putative modulator of DNA gyrase AhyD4_01980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AhyD4_01985 PF01722 BolA-like protein AhyD4_01995 PF05494 MlaC protein AhyD4_02000 PF02470 MlaD protein AhyD4_02005 PF02405 Permease MlaE AhyD4_02010 PF00005 ABC transporter AhyD4_02015 PF00571 CBS domain AhyD4_02015 PF01380 SIS domain AhyD4_02025 PF06835 Lipopolysaccharide-assembly, LptC-related AhyD4_02030 PF03968 OstA-like protein AhyD4_02035 PF00005 ABC transporter AhyD4_02035 PF12399 Branched-chain amino acid ATP-binding cassette transporter AhyD4_02040 PF04552 Sigma-54, DNA binding domain AhyD4_02040 PF00309 Sigma-54 factor, Activator interacting domain (AID) AhyD4_02040 PF04963 Sigma-54 factor, core binding domain AhyD4_02045 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AhyD4_02050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AhyD4_02055 PF03668 P-loop ATPase protein family AhyD4_02060 PF00381 PTS HPr component phosphorylation site AhyD4_02065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AhyD4_02065 PF00874 PRD domain AhyD4_02065 PF05043 Mga helix-turn-helix domain AhyD4_02065 PF08279 HTH domain AhyD4_02070 PF07071 KDGP aldolase AhyD4_02075 PF03841 L-seryl-tRNA selenium transferase AhyD4_02080 PF01979 Amidohydrolase family AhyD4_02110 PF13180 PDZ domain AhyD4_02115 PF00595 PDZ domain AhyD4_02115 PF13180 PDZ domain AhyD4_02125 PF03969 AFG1-like ATPase AhyD4_02130 PF00572 Ribosomal protein L13 AhyD4_02135 PF00380 Ribosomal protein S9/S16 AhyD4_02140 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AhyD4_02140 PF00355 Rieske [2Fe-2S] domain AhyD4_02145 PF00033 Cytochrome b/b6/petB AhyD4_02145 PF00032 Cytochrome b(C-terminal)/b6/petD AhyD4_02150 PF02167 Cytochrome C1 family AhyD4_02155 PF02798 Glutathione S-transferase, N-terminal domain AhyD4_02155 PF00043 Glutathione S-transferase, C-terminal domain AhyD4_02160 PF04386 Stringent starvation protein B AhyD4_02165 PF04972 BON domain AhyD4_02170 PF13580 SIS domain AhyD4_02175 PF02021 Uncharacterised protein family UPF0102 AhyD4_02180 PF04348 LppC putative lipoprotein AhyD4_02185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AhyD4_02195 PF02381 MraZ protein, putative antitoxin-like AhyD4_02200 PF01795 MraW methylase family AhyD4_02205 PF04999 Cell division protein FtsL AhyD4_02210 PF03717 Penicillin-binding Protein dimerisation domain AhyD4_02210 PF00905 Penicillin binding protein transpeptidase domain AhyD4_02215 PF02875 Mur ligase family, glutamate ligase domain AhyD4_02215 PF01225 Mur ligase family, catalytic domain AhyD4_02215 PF08245 Mur ligase middle domain AhyD4_02220 PF08245 Mur ligase middle domain AhyD4_02220 PF02875 Mur ligase family, glutamate ligase domain AhyD4_02220 PF01225 Mur ligase family, catalytic domain AhyD4_02225 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AhyD4_02225 PF00953 Glycosyl transferase family 4 AhyD4_02230 PF02875 Mur ligase family, glutamate ligase domain AhyD4_02230 PF08245 Mur ligase middle domain AhyD4_02235 PF01098 Cell cycle protein AhyD4_02240 PF04101 Glycosyltransferase family 28 C-terminal domain AhyD4_02240 PF03033 Glycosyltransferase family 28 N-terminal domain AhyD4_02245 PF08245 Mur ligase middle domain AhyD4_02245 PF02875 Mur ligase family, glutamate ligase domain AhyD4_02245 PF01225 Mur ligase family, catalytic domain AhyD4_02250 PF08478 POTRA domain, FtsQ-type AhyD4_02250 PF03799 Cell division protein FtsQ AhyD4_02255 PF02491 SHS2 domain inserted in FTSA AhyD4_02260 PF12327 FtsZ family, C-terminal domain AhyD4_02260 PF00091 Tubulin/FtsZ family, GTPase domain AhyD4_02265 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AhyD4_02275 PF01043 SecA preprotein cross-linking domain AhyD4_02275 PF07517 SecA DEAD-like domain AhyD4_02275 PF02810 SEC-C motif AhyD4_02275 PF07516 SecA Wing and Scaffold domain AhyD4_02285 PF00293 NUDIX domain AhyD4_02290 PF03884 DNA gyrase inhibitor YacG AhyD4_02295 PF07072 Cell division protein AhyD4_02300 PF01121 Dephospho-CoA kinase AhyD4_02305 PF06750 Bacterial Peptidase A24 N-terminal domain AhyD4_02305 PF01478 Type IV leader peptidase family AhyD4_02310 PF00482 Type II secretion system (T2SS), protein F AhyD4_02315 PF00437 Type II/IV secretion system protein AhyD4_02315 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AhyD4_02320 PF07963 Prokaryotic N-terminal methylation motif AhyD4_02325 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AhyD4_02325 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AhyD4_02340 PF07729 FCD domain AhyD4_02340 PF00392 Bacterial regulatory proteins, gntR family AhyD4_02345 PF00456 Transketolase, thiamine diphosphate binding domain AhyD4_02345 PF17831 Pyruvate dehydrogenase E1 component middle domain AhyD4_02350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AhyD4_02350 PF02817 e3 binding domain AhyD4_02350 PF00364 Biotin-requiring enzyme AhyD4_02355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AhyD4_02355 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_02360 PF00563 EAL domain AhyD4_02360 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_02360 PF05231 MASE1 AhyD4_02360 PF08447 PAS fold AhyD4_02360 PF08448 PAS fold AhyD4_02360 PF13426 PAS domain AhyD4_02370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_02370 PF12729 Four helix bundle sensory module for signal transduction AhyD4_02370 PF00672 HAMP domain AhyD4_02375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_02375 PF00672 HAMP domain AhyD4_02375 PF12729 Four helix bundle sensory module for signal transduction AhyD4_02380 PF01734 Patatin-like phospholipase AhyD4_02385 PF00330 Aconitase family (aconitate hydratase) AhyD4_02385 PF06434 Aconitate hydratase 2 N-terminus AhyD4_02385 PF11791 Aconitate B N-terminal domain AhyD4_02395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_02395 PF03466 LysR substrate binding domain AhyD4_02400 PF01810 LysE type translocator AhyD4_02410 PF02492 CobW/HypB/UreG, nucleotide-binding domain AhyD4_02410 PF07683 Cobalamin synthesis protein cobW C-terminal domain AhyD4_02415 PF07690 Major Facilitator Superfamily AhyD4_02425 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AhyD4_02430 PF02152 Dihydroneopterin aldolase AhyD4_02435 PF02660 Glycerol-3-phosphate acyltransferase AhyD4_02480 PF01584 CheW-like domain AhyD4_02480 PF00072 Response regulator receiver domain AhyD4_02485 PF00106 short chain dehydrogenase AhyD4_02490 PF08351 Domain of unknown function (DUF1726) AhyD4_02490 PF13718 GNAT acetyltransferase 2 AhyD4_02490 PF05127 Helicase AhyD4_02490 PF17176 tRNA-binding domain AhyD4_02505 PF00210 Ferritin-like domain AhyD4_02515 PF02142 MGS-like domain AhyD4_02530 PF00710 Asparaginase, N-terminal AhyD4_02530 PF17763 Glutaminase/Asparaginase C-terminal domain AhyD4_02545 PF00356 Bacterial regulatory proteins, lacI family AhyD4_02550 PF02378 Phosphotransferase system, EIIC AhyD4_02550 PF00367 phosphotransferase system, EIIB AhyD4_02555 PF00128 Alpha amylase, catalytic domain AhyD4_02555 PF11941 Domain of unknown function (DUF3459) AhyD4_02560 PF14602 Hexapeptide repeat of succinyl-transferase AhyD4_02560 PF12464 Maltose acetyltransferase AhyD4_02565 PF01037 Lrp/AsnC ligand binding domain AhyD4_02570 PF00892 EamA-like transporter family AhyD4_02580 PF00171 Aldehyde dehydrogenase family AhyD4_02585 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_02590 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_02595 PF08402 TOBE domain AhyD4_02595 PF00005 ABC transporter AhyD4_02600 PF13416 Bacterial extracellular solute-binding protein AhyD4_02605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_02605 PF03466 LysR substrate binding domain AhyD4_02610 PF03553 Na+/H+ antiporter family AhyD4_02650 PF08323 Starch synthase catalytic domain AhyD4_02650 PF00534 Glycosyl transferases group 1 AhyD4_02655 PF00483 Nucleotidyl transferase AhyD4_02660 PF08468 Methyltransferase small domain N-terminal AhyD4_02660 PF05175 Methyltransferase small domain AhyD4_02665 PF00701 Dihydrodipicolinate synthetase family AhyD4_02670 PF00360 Phytochrome region AhyD4_02670 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_02670 PF01590 GAF domain AhyD4_02670 PF00563 EAL domain AhyD4_02680 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_02685 PF17209 Hfq protein AhyD4_02690 PF04403 Paraquat-inducible protein A AhyD4_02695 PF02470 MlaD protein AhyD4_02700 PF03886 ABC-type transport auxiliary lipoprotein component AhyD4_02705 PF01389 OmpA-like transmembrane domain AhyD4_02705 PF00691 OmpA family AhyD4_02715 PF00657 GDSL-like Lipase/Acylhydrolase AhyD4_02720 PF04076 Bacterial OB fold (BOF) protein AhyD4_02725 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AhyD4_02725 PF01464 Transglycosylase SLT domain AhyD4_02730 PF04362 Bacterial Fe(2+) trafficking AhyD4_02735 PF00730 HhH-GPD superfamily base excision DNA repair protein AhyD4_02735 PF10576 Iron-sulfur binding domain of endonuclease III AhyD4_02735 PF00633 Helix-hairpin-helix motif AhyD4_02735 PF14815 NUDIX domain AhyD4_02740 PF16537 Type II secretion system protein B AhyD4_02745 PF01471 Putative peptidoglycan binding domain AhyD4_02745 PF13401 AAA domain AhyD4_02755 PF01966 HD domain AhyD4_02755 PF12627 Probable RNA and SrmB- binding site of polymerase A AhyD4_02755 PF01743 Poly A polymerase head domain AhyD4_02770 PF04172 LrgB-like family AhyD4_02775 PF03788 LrgA family AhyD4_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_02780 PF03466 LysR substrate binding domain AhyD4_02785 PF00155 Aminotransferase class I and II AhyD4_02785 PF00392 Bacterial regulatory proteins, gntR family AhyD4_02805 PF04073 Aminoacyl-tRNA editing domain AhyD4_02810 PF01384 Phosphate transporter family AhyD4_02815 PF01865 Protein of unknown function DUF47 AhyD4_02830 PF03279 Bacterial lipid A biosynthesis acyltransferase AhyD4_02835 PF01467 Cytidylyltransferase-like AhyD4_02835 PF00294 pfkB family carbohydrate kinase AhyD4_02840 PF02321 Outer membrane efflux protein AhyD4_02845 PF00293 NUDIX domain AhyD4_02850 PF06853 Protein of unknown function (DUF1249) AhyD4_02855 PF00149 Calcineurin-like phosphoesterase AhyD4_02860 PF05728 Uncharacterised protein family (UPF0227) AhyD4_02865 PF00293 NUDIX domain AhyD4_02875 PF07869 Protein of unknown function (DUF1656) AhyD4_02880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_02880 PF00529 HlyD membrane-fusion protein of T1SS AhyD4_02885 PF04632 Fusaric acid resistance protein family AhyD4_02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_02890 PF00204 DNA gyrase B AhyD4_02890 PF01751 Toprim domain AhyD4_02890 PF00986 DNA gyrase B subunit, carboxyl terminus AhyD4_02895 PF00521 DNA gyrase/topoisomerase IV, subunit A AhyD4_02895 PF03989 DNA gyrase C-terminal domain, beta-propeller AhyD4_02930 PF00226 DnaJ domain AhyD4_02930 PF01556 DnaJ C terminal domain AhyD4_02930 PF00684 DnaJ central domain AhyD4_02935 PF00578 AhpC/TSA family AhyD4_02960 PF01553 Acyltransferase AhyD4_02965 PF04012 PspA/IM30 family AhyD4_02980 PF01541 GIY-YIG catalytic domain AhyD4_02990 PF00892 EamA-like transporter family AhyD4_02995 PF03167 Uracil DNA glycosylase superfamily AhyD4_03000 PF00892 EamA-like transporter family AhyD4_03010 PF00950 ABC 3 transport family AhyD4_03015 PF00005 ABC transporter AhyD4_03020 PF01297 Zinc-uptake complex component A periplasmic AhyD4_03040 PF01476 LysM domain AhyD4_03040 PF08525 Opacity-associated protein A N-terminal motif AhyD4_03040 PF01551 Peptidase family M23 AhyD4_03045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AhyD4_03050 PF04222 Protein of unknown function (DUF416) AhyD4_03065 PF02028 BCCT, betaine/carnitine/choline family transporter AhyD4_03070 PF05188 MutS domain II AhyD4_03070 PF01624 MutS domain I AhyD4_03070 PF05192 MutS domain III AhyD4_03070 PF05190 MutS family domain IV AhyD4_03070 PF00488 MutS domain V AhyD4_03085 PF02464 Competence-damaged protein AhyD4_03090 PF00154 recA bacterial DNA recombination protein AhyD4_03095 PF02631 RecX family AhyD4_03100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AhyD4_03100 PF01411 tRNA synthetases class II (A) AhyD4_03100 PF02272 DHHA1 domain AhyD4_03105 PF01842 ACT domain AhyD4_03105 PF13840 ACT domain AhyD4_03105 PF00696 Amino acid kinase family AhyD4_03110 PF02599 Global regulator protein family AhyD4_03145 PF00768 D-alanyl-D-alanine carboxypeptidase AhyD4_03150 PF09335 SNARE associated Golgi protein AhyD4_03155 PF00571 CBS domain AhyD4_03155 PF03471 Transporter associated domain AhyD4_03155 PF01595 Cyclin M transmembrane N-terminal domain AhyD4_03160 PF10458 Valyl tRNA synthetase tRNA binding arm AhyD4_03160 PF00133 tRNA synthetases class I (I, L, M and V) AhyD4_03160 PF08264 Anticodon-binding domain of tRNA AhyD4_03165 PF04364 DNA polymerase III chi subunit, HolC AhyD4_03170 PF00883 Cytosol aminopeptidase family, catalytic domain AhyD4_03170 PF02789 Cytosol aminopeptidase family, N-terminal domain AhyD4_03175 PF03739 Lipopolysaccharide export system permease LptF/LptG AhyD4_03180 PF03739 Lipopolysaccharide export system permease LptF/LptG AhyD4_03195 PF13356 Arm DNA-binding domain AhyD4_03195 PF00589 Phage integrase family AhyD4_03210 PF08346 AntA/AntB antirepressor AhyD4_03210 PF10548 P22AR C-terminal domain AhyD4_03235 PF00909 Ammonium Transporter Family AhyD4_03240 PF05958 tRNA (Uracil-5-)-methyltransferase AhyD4_03240 PF01938 TRAM domain AhyD4_03245 PF07963 Prokaryotic N-terminal methylation motif AhyD4_03245 PF00114 Pilin (bacterial filament) AhyD4_03250 PF01026 TatD related DNase AhyD4_03255 PF01773 Na+ dependent nucleoside transporter N-terminus AhyD4_03255 PF07662 Na+ dependent nucleoside transporter C-terminus AhyD4_03255 PF07670 Nucleoside recognition AhyD4_03265 PF01791 DeoC/LacD family aldolase AhyD4_03270 PF02885 Glycosyl transferase family, helical bundle domain AhyD4_03270 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AhyD4_03270 PF00591 Glycosyl transferase family, a/b domain AhyD4_03275 PF01676 Metalloenzyme superfamily AhyD4_03280 PF01048 Phosphorylase superfamily AhyD4_03285 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_03285 PF00563 EAL domain AhyD4_03285 PF05231 MASE1 AhyD4_03285 PF08448 PAS fold AhyD4_03285 PF13426 PAS domain AhyD4_03285 PF08447 PAS fold AhyD4_03295 PF18429 Domain of unknown function (DUF5609) AhyD4_03310 PF18073 Rubredoxin metal binding domain AhyD4_03315 PF07238 PilZ domain AhyD4_03320 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AhyD4_03325 PF00216 Bacterial DNA-binding protein AhyD4_03335 PF01207 Dihydrouridine synthase (Dus) AhyD4_03355 PF05525 Branched-chain amino acid transport protein AhyD4_03360 PF05525 Branched-chain amino acid transport protein AhyD4_03365 PF05175 Methyltransferase small domain AhyD4_03370 PF00271 Helicase conserved C-terminal domain AhyD4_03370 PF00270 DEAD/DEAH box helicase AhyD4_03375 PF03883 Peroxide stress protein YaaA AhyD4_03380 PF00437 Type II/IV secretion system protein AhyD4_03385 PF00437 Type II/IV secretion system protein AhyD4_03390 PF01168 Alanine racemase, N-terminal domain AhyD4_03395 PF03807 NADP oxidoreductase coenzyme F420-dependent AhyD4_03395 PF14748 Pyrroline-5-carboxylate reductase dimerisation AhyD4_03400 PF02325 YGGT family AhyD4_03405 PF02594 Uncharacterised ACR, YggU family COG1872 AhyD4_03420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_03430 PF00132 Bacterial transferase hexapeptide (six repeats) AhyD4_03435 PF10952 Protein of unknown function (DUF2753) AhyD4_03440 PF00378 Enoyl-CoA hydratase/isomerase AhyD4_03455 PF00106 short chain dehydrogenase AhyD4_03460 PF04073 Aminoacyl-tRNA editing domain AhyD4_03460 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AhyD4_03460 PF03129 Anticodon binding domain AhyD4_03465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_03465 PF00672 HAMP domain AhyD4_03470 PF01330 RuvA N terminal domain AhyD4_03470 PF07499 RuvA, C-terminal domain AhyD4_03475 PF17864 RuvB AAA lid domain AhyD4_03475 PF05491 RuvB C-terminal winged helix domain AhyD4_03475 PF05496 Holliday junction DNA helicase RuvB P-loop domain AhyD4_03480 PF01654 Cytochrome bd terminal oxidase subunit I AhyD4_03485 PF02322 Cytochrome bd terminal oxidase subunit II AhyD4_03490 PF08173 Membrane bound YbgT-like protein AhyD4_03495 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) AhyD4_03500 PF03061 Thioesterase superfamily AhyD4_03505 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_03510 PF02472 Biopolymer transport protein ExbD/TolR AhyD4_03520 PF04052 TolB amino-terminal domain AhyD4_03520 PF07676 WD40-like Beta Propeller Repeat AhyD4_03525 PF00691 OmpA family AhyD4_03530 PF13174 Tetratricopeptide repeat AhyD4_03530 PF16331 TolA binding protein trimerisation AhyD4_03585 PF00672 HAMP domain AhyD4_03585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_03590 PF02445 Quinolinate synthetase A protein AhyD4_03595 PF01263 Aldose 1-epimerase AhyD4_03600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AhyD4_03600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AhyD4_03605 PF02446 4-alpha-glucanotransferase AhyD4_03610 PF02806 Alpha amylase, C-terminal all-beta domain AhyD4_03610 PF00128 Alpha amylase, catalytic domain AhyD4_03610 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AhyD4_03615 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AhyD4_03615 PF00128 Alpha amylase, catalytic domain AhyD4_03620 PF01641 SelR domain AhyD4_03630 PF00293 NUDIX domain AhyD4_03635 PF00107 Zinc-binding dehydrogenase AhyD4_03635 PF16884 N-terminal domain of oxidoreductase AhyD4_03640 PF02566 OsmC-like protein AhyD4_03645 PF01047 MarR family AhyD4_03660 PF01037 Lrp/AsnC ligand binding domain AhyD4_03670 PF07690 Major Facilitator Superfamily AhyD4_03690 PF00209 Sodium:neurotransmitter symporter family AhyD4_03700 PF00209 Sodium:neurotransmitter symporter family AhyD4_03725 PF00392 Bacterial regulatory proteins, gntR family AhyD4_03725 PF00155 Aminotransferase class I and II AhyD4_03735 PF01810 LysE type translocator AhyD4_03740 PF01177 Asp/Glu/Hydantoin racemase AhyD4_03745 PF07732 Multicopper oxidase AhyD4_03745 PF00394 Multicopper oxidase AhyD4_03745 PF07731 Multicopper oxidase AhyD4_03755 PF04074 YhcH/YjgK/YiaL AhyD4_03760 PF00871 Acetokinase family AhyD4_03765 PF00924 Mechanosensitive ion channel AhyD4_03770 PF17969 L,D-transpeptidase C-terminal domain AhyD4_03770 PF03734 L,D-transpeptidase catalytic domain AhyD4_03775 PF00474 Sodium:solute symporter family AhyD4_03780 PF00561 alpha/beta hydrolase fold AhyD4_03805 PF02525 Flavodoxin-like fold AhyD4_03810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_03810 PF03466 LysR substrate binding domain AhyD4_03815 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AhyD4_03825 PF12848 ABC transporter AhyD4_03825 PF00005 ABC transporter AhyD4_03830 PF00571 CBS domain AhyD4_03830 PF01380 SIS domain AhyD4_03835 PF01957 NfeD-like C-terminal, partner-binding AhyD4_03840 PF16200 C-terminal region of band_7 AhyD4_03840 PF01145 SPFH domain / Band 7 family AhyD4_03845 PF14824 Sirohaem biosynthesis protein central AhyD4_03845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AhyD4_03845 PF10414 Sirohaem synthase dimerisation region AhyD4_03850 PF01507 Phosphoadenosine phosphosulfate reductase family AhyD4_03855 PF00009 Elongation factor Tu GTP binding domain AhyD4_03860 PF03600 Citrate transporter AhyD4_03860 PF02080 TrkA-C domain AhyD4_03885 PF08447 PAS fold AhyD4_03885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_03905 PF00005 ABC transporter AhyD4_03920 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AhyD4_03935 PF00719 Inorganic pyrophosphatase AhyD4_03940 PF01225 Mur ligase family, catalytic domain AhyD4_03940 PF02875 Mur ligase family, glutamate ligase domain AhyD4_03940 PF08245 Mur ligase middle domain AhyD4_03945 PF02441 Flavoprotein AhyD4_03950 PF00440 Bacterial regulatory proteins, tetR family AhyD4_03955 PF00156 Phosphoribosyl transferase domain AhyD4_03960 PF00005 ABC transporter AhyD4_03965 PF01061 ABC-2 type transporter AhyD4_03970 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component AhyD4_03975 PF01869 BadF/BadG/BcrA/BcrD ATPase family AhyD4_03995 PF02569 Pantoate-beta-alanine ligase AhyD4_04000 PF02548 Ketopantoate hydroxymethyltransferase AhyD4_04005 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AhyD4_04010 PF12626 Polymerase A arginine-rich C-terminus AhyD4_04010 PF01743 Poly A polymerase head domain AhyD4_04010 PF12627 Probable RNA and SrmB- binding site of polymerase A AhyD4_04015 PF00749 tRNA synthetases class I (E and Q), catalytic domain AhyD4_04020 PF01258 Prokaryotic dksA/traR C4-type zinc finger AhyD4_04025 PF17746 SfsA N-terminal OB domain AhyD4_04025 PF03749 Sugar fermentation stimulation protein RE domain AhyD4_04035 PF04408 Helicase associated domain (HA2) AhyD4_04035 PF08482 ATP-dependent helicase C-terminal AhyD4_04035 PF00270 DEAD/DEAH box helicase AhyD4_04035 PF00271 Helicase conserved C-terminal domain AhyD4_04040 PF00912 Transglycosylase AhyD4_04040 PF00905 Penicillin binding protein transpeptidase domain AhyD4_04040 PF14814 Bifunctional transglycosylase second domain AhyD4_04045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AhyD4_04050 PF00893 Small Multidrug Resistance protein AhyD4_04055 PF00893 Small Multidrug Resistance protein AhyD4_04065 PF11849 Domain of unknown function (DUF3369) AhyD4_04075 PF01569 PAP2 superfamily AhyD4_04090 PF00202 Aminotransferase class-III AhyD4_04095 PF00654 Voltage gated chloride channel AhyD4_04105 PF01521 Iron-sulphur cluster biosynthesis AhyD4_04130 PF01810 LysE type translocator AhyD4_04135 PF02954 Bacterial regulatory protein, Fis family AhyD4_04140 PF01207 Dihydrouridine synthase (Dus) AhyD4_04145 PF02321 Outer membrane efflux protein AhyD4_04150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_04180 PF00072 Response regulator receiver domain AhyD4_04185 PF00854 POT family AhyD4_04190 PF00483 Nucleotidyl transferase AhyD4_04200 PF00459 Inositol monophosphatase family AhyD4_04205 PF03795 YCII-related domain AhyD4_04210 PF04279 Intracellular septation protein A AhyD4_04215 PF00282 Pyridoxal-dependent decarboxylase conserved domain AhyD4_04220 PF03006 Haemolysin-III related AhyD4_04225 PF06826 Predicted Permease Membrane Region AhyD4_04225 PF02080 TrkA-C domain AhyD4_04240 PF01584 CheW-like domain AhyD4_04240 PF00072 Response regulator receiver domain AhyD4_04245 PF13472 GDSL-like Lipase/Acylhydrolase family AhyD4_04250 PF00005 ABC transporter AhyD4_04260 PF08338 Domain of unknown function (DUF1731) AhyD4_04260 PF01370 NAD dependent epimerase/dehydratase family AhyD4_04265 PF12792 CSS motif domain associated with EAL AhyD4_04265 PF00563 EAL domain AhyD4_04270 PF00155 Aminotransferase class I and II AhyD4_04275 PF01483 Proprotein convertase P-domain AhyD4_04275 PF04389 Peptidase family M28 AhyD4_04280 PF02390 Putative methyltransferase AhyD4_04285 PF04320 Protein with unknown function (DUF469) AhyD4_04290 PF04960 Glutaminase AhyD4_04295 PF00581 Rhodanese-like domain AhyD4_04300 PF05922 Peptidase inhibitor I9 AhyD4_04300 PF00082 Subtilase family AhyD4_04305 PF06004 Bacterial protein of unknown function (DUF903) AhyD4_04310 PF00664 ABC transporter transmembrane region AhyD4_04310 PF00005 ABC transporter AhyD4_04315 PF00561 alpha/beta hydrolase fold AhyD4_04330 PF05547 Immune inhibitor A peptidase M6 AhyD4_04330 PF00801 PKD domain AhyD4_04335 PF06877 Regulator of ribonuclease activity B AhyD4_04340 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_04340 PF03707 Bacterial signalling protein N terminal repeat AhyD4_04340 PF00563 EAL domain AhyD4_04360 PF09905 DNA-binding protein VF530 AhyD4_04365 PF02666 Phosphatidylserine decarboxylase AhyD4_04370 PF03193 RsgA GTPase AhyD4_04375 PF00929 Exonuclease AhyD4_04410 PF00313 'Cold-shock' DNA-binding domain AhyD4_04420 PF00672 HAMP domain AhyD4_04420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_04425 PF00749 tRNA synthetases class I (E and Q), catalytic domain AhyD4_04430 PF00749 tRNA synthetases class I (E and Q), catalytic domain AhyD4_04460 PF06483 Chitinase C AhyD4_04460 PF00704 Glycosyl hydrolases family 18 AhyD4_04475 PF02472 Biopolymer transport protein ExbD/TolR AhyD4_04480 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_04485 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_04495 PF00593 TonB dependent receptor AhyD4_04495 PF07715 TonB-dependent Receptor Plug Domain AhyD4_04500 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_04505 PF12911 N-terminal TM domain of oligopeptide transport permease C AhyD4_04505 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_04515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_04515 PF00005 ABC transporter AhyD4_04520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_04520 PF00005 ABC transporter AhyD4_04525 PF01546 Peptidase family M20/M25/M40 AhyD4_04525 PF07687 Peptidase dimerisation domain AhyD4_04530 PF00156 Phosphoribosyl transferase domain AhyD4_04540 PF07417 Sigma factor-binding transcriptional regulator Crl AhyD4_04545 PF01472 PUA domain AhyD4_04545 PF00696 Amino acid kinase family AhyD4_04550 PF00171 Aldehyde dehydrogenase family AhyD4_04560 PF00582 Universal stress protein family AhyD4_04575 PF04324 BFD-like [2Fe-2S] binding domain AhyD4_04575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_04575 PF00384 Molybdopterin oxidoreductase AhyD4_04575 PF01568 Molydopterin dinucleotide binding domain AhyD4_04580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AhyD4_04580 PF14824 Sirohaem biosynthesis protein central AhyD4_04580 PF10414 Sirohaem synthase dimerisation region AhyD4_04590 PF00005 ABC transporter AhyD4_04595 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_04600 PF00005 ABC transporter AhyD4_04605 PF18267 Rubredoxin NAD+ reductase C-terminal domain AhyD4_04605 PF13806 Rieske-like [2Fe-2S] domain AhyD4_04605 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AhyD4_04605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_04605 PF04324 BFD-like [2Fe-2S] binding domain AhyD4_04605 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AhyD4_04610 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_04610 PF13806 Rieske-like [2Fe-2S] domain AhyD4_04610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AhyD4_04610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AhyD4_04610 PF04324 BFD-like [2Fe-2S] binding domain AhyD4_04610 PF18267 Rubredoxin NAD+ reductase C-terminal domain AhyD4_04615 PF00294 pfkB family carbohydrate kinase AhyD4_04620 PF04227 Indigoidine synthase A like protein AhyD4_04625 PF00194 Eukaryotic-type carbonic anhydrase AhyD4_04630 PF00034 Cytochrome c AhyD4_04630 PF03150 Di-haem cytochrome c peroxidase AhyD4_04665 PF00550 Phosphopantetheine attachment site AhyD4_04670 PF00550 Phosphopantetheine attachment site AhyD4_04680 PF13193 AMP-binding enzyme C-terminal domain AhyD4_04680 PF00501 AMP-binding enzyme AhyD4_04685 PF07977 FabA-like domain AhyD4_04695 PF00221 Aromatic amino acid lyase AhyD4_04720 PF00109 Beta-ketoacyl synthase, N-terminal domain AhyD4_04720 PF02801 Beta-ketoacyl synthase, C-terminal domain AhyD4_04735 PF02801 Beta-ketoacyl synthase, C-terminal domain AhyD4_04735 PF00109 Beta-ketoacyl synthase, N-terminal domain AhyD4_04745 PF00994 Probable molybdopterin binding domain AhyD4_04755 PF06738 Putative threonine/serine exporter AhyD4_04760 PF12821 Threonine/Serine exporter, ThrE AhyD4_04765 PF00186 Dihydrofolate reductase AhyD4_04770 PF00005 ABC transporter AhyD4_04770 PF00571 CBS domain AhyD4_04775 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_04780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AhyD4_04785 PF01507 Phosphoadenosine phosphosulfate reductase family AhyD4_04790 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AhyD4_04790 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AhyD4_04795 PF00667 FAD binding domain AhyD4_04795 PF00258 Flavodoxin AhyD4_04795 PF00175 Oxidoreductase NAD-binding domain AhyD4_04800 PF02567 Phenazine biosynthesis-like protein AhyD4_04805 PF00152 tRNA synthetases class II (D, K and N) AhyD4_04805 PF01336 OB-fold nucleic acid binding domain AhyD4_04810 PF00472 RF-1 domain AhyD4_04810 PF03462 PCRF domain AhyD4_04815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_04815 PF00672 HAMP domain AhyD4_04815 PF02743 Cache domain AhyD4_04820 PF03616 Sodium/glutamate symporter AhyD4_04825 PF00710 Asparaginase, N-terminal AhyD4_04825 PF17763 Glutaminase/Asparaginase C-terminal domain AhyD4_04830 PF07023 Protein of unknown function (DUF1315) AhyD4_04835 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AhyD4_04835 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AhyD4_04850 PF01343 Peptidase family S49 AhyD4_04855 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_04855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AhyD4_04860 PF00881 Nitroreductase family AhyD4_04865 PF14602 Hexapeptide repeat of succinyl-transferase AhyD4_04865 PF12464 Maltose acetyltransferase AhyD4_04870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AhyD4_04870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AhyD4_04870 PF01842 ACT domain AhyD4_04880 PF00107 Zinc-binding dehydrogenase AhyD4_04880 PF08240 Alcohol dehydrogenase GroES-like domain AhyD4_04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_04885 PF03466 LysR substrate binding domain AhyD4_04890 PF02378 Phosphotransferase system, EIIC AhyD4_04890 PF00367 phosphotransferase system, EIIB AhyD4_04890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AhyD4_04895 PF00474 Sodium:solute symporter family AhyD4_04905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AhyD4_04905 PF00289 Biotin carboxylase, N-terminal domain AhyD4_04905 PF02785 Biotin carboxylase C-terminal domain AhyD4_04910 PF00364 Biotin-requiring enzyme AhyD4_04915 PF01220 Dehydroquinase class II AhyD4_04920 PF13193 AMP-binding enzyme C-terminal domain AhyD4_04920 PF00501 AMP-binding enzyme AhyD4_04920 PF16177 Acetyl-coenzyme A synthetase N-terminus AhyD4_04930 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_04930 PF03707 Bacterial signalling protein N terminal repeat AhyD4_04930 PF00563 EAL domain AhyD4_04930 PF13188 PAS domain AhyD4_04950 PF02613 Nitrate reductase delta subunit AhyD4_04965 PF00464 Serine hydroxymethyltransferase AhyD4_04980 PF03477 ATP cone domain AhyD4_04985 PF01872 RibD C-terminal domain AhyD4_04985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AhyD4_04990 PF00677 Lumazine binding domain AhyD4_04995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AhyD4_04995 PF00925 GTP cyclohydrolase II AhyD4_05005 PF00885 6,7-dimethyl-8-ribityllumazine synthase AhyD4_05010 PF01029 NusB family AhyD4_05015 PF02769 AIR synthase related protein, C-terminal domain AhyD4_05015 PF00586 AIR synthase related protein, N-terminal domain AhyD4_05020 PF04608 Phosphatidylglycerophosphatase A AhyD4_05025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_05025 PF00005 ABC transporter AhyD4_05030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_05040 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_05040 PF12911 N-terminal TM domain of oligopeptide transport permease C AhyD4_05045 PF02779 Transketolase, pyrimidine binding domain AhyD4_05045 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AhyD4_05045 PF02780 Transketolase, C-terminal domain AhyD4_05050 PF00348 Polyprenyl synthetase AhyD4_05055 PF02609 Exonuclease VII small subunit AhyD4_05060 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_05065 PF00691 OmpA family AhyD4_05065 PF13677 Membrane MotB of proton-channel complex MotA/MotB AhyD4_05070 PF03449 Transcription elongation factor, N-terminal AhyD4_05070 PF01272 Transcription elongation factor, GreA/GreB, C-term AhyD4_05080 PF01985 CRS1 / YhbY (CRM) domain AhyD4_05085 PF01728 FtsJ-like methyltransferase AhyD4_05090 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_05090 PF17862 AAA+ lid domain AhyD4_05090 PF06480 FtsH Extracellular AhyD4_05090 PF01434 Peptidase family M41 AhyD4_05095 PF00809 Pterin binding enzyme AhyD4_05100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AhyD4_05100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AhyD4_05100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AhyD4_05100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AhyD4_05105 PF00121 Triosephosphate isomerase AhyD4_05110 PF03840 Preprotein translocase SecG subunit AhyD4_05125 PF17384 RimP C-terminal SH3 domain AhyD4_05125 PF02576 RimP N-terminal domain AhyD4_05130 PF00575 S1 RNA binding domain AhyD4_05130 PF08529 NusA N-terminal domain AhyD4_05130 PF13184 NusA-like KH domain AhyD4_05135 PF04760 Translation initiation factor IF-2, N-terminal region AhyD4_05135 PF08364 Bacterial translation initiation factor IF-2 associated region AhyD4_05135 PF00009 Elongation factor Tu GTP binding domain AhyD4_05135 PF11987 Translation-initiation factor 2 AhyD4_05140 PF02033 Ribosome-binding factor A AhyD4_05145 PF16198 tRNA pseudouridylate synthase B C-terminal domain AhyD4_05145 PF09157 Pseudouridine synthase II TruB, C-terminal AhyD4_05145 PF01509 TruB family pseudouridylate synthase (N terminal domain) AhyD4_05150 PF00312 Ribosomal protein S15 AhyD4_05155 PF01138 3' exoribonuclease family, domain 1 AhyD4_05155 PF00013 KH domain AhyD4_05155 PF00575 S1 RNA binding domain AhyD4_05155 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AhyD4_05155 PF03725 3' exoribonuclease family, domain 2 AhyD4_05165 PF03707 Bacterial signalling protein N terminal repeat AhyD4_05165 PF00563 EAL domain AhyD4_05165 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_05170 PF02635 DsrE/DsrF-like family AhyD4_05180 PF10415 Fumarase C C-terminus AhyD4_05180 PF00206 Lyase AhyD4_05185 PF03575 Peptidase family S51 AhyD4_05190 PF02554 Carbon starvation protein CstA AhyD4_05190 PF13722 5TM C-terminal transporter carbon starvation CstA AhyD4_05195 PF04397 LytTr DNA-binding domain AhyD4_05195 PF00072 Response regulator receiver domain AhyD4_05205 PF00072 Response regulator receiver domain AhyD4_05205 PF00196 Bacterial regulatory proteins, luxR family AhyD4_05210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_05210 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_05210 PF00989 PAS fold AhyD4_05215 PF13247 4Fe-4S dicluster domain AhyD4_05220 PF03916 Polysulphide reductase, NrfD AhyD4_05225 PF01568 Molydopterin dinucleotide binding domain AhyD4_05225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_05225 PF00384 Molybdopterin oxidoreductase AhyD4_05255 PF03734 L,D-transpeptidase catalytic domain AhyD4_05255 PF17969 L,D-transpeptidase C-terminal domain AhyD4_05265 PF01523 Putative modulator of DNA gyrase AhyD4_05270 PF01523 Putative modulator of DNA gyrase AhyD4_05275 PF00258 Flavodoxin AhyD4_05280 PF00589 Phage integrase family AhyD4_05280 PF02899 Phage integrase, N-terminal SAM-like domain AhyD4_05285 PF01741 Large-conductance mechanosensitive channel, MscL AhyD4_05290 PF10411 Disulfide bond isomerase protein N-terminus AhyD4_05290 PF13098 Thioredoxin-like domain AhyD4_05295 PF02272 DHHA1 domain AhyD4_05295 PF01368 DHH family AhyD4_05295 PF17768 RecJ OB domain AhyD4_05300 PF13411 MerR HTH family regulatory protein AhyD4_05315 PF02508 Rnf-Nqr subunit, membrane protein AhyD4_05320 PF06821 Serine hydrolase AhyD4_05330 PF04055 Radical SAM superfamily AhyD4_05330 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AhyD4_05335 PF03099 Biotin/lipoate A/B protein ligase family AhyD4_05340 PF04359 Protein of unknown function (DUF493) AhyD4_05345 PF00768 D-alanyl-D-alanine carboxypeptidase AhyD4_05345 PF07943 Penicillin-binding protein 5, C-terminal domain AhyD4_05350 PF03330 Lytic transglycolase AhyD4_05350 PF05036 Sporulation related domain AhyD4_05355 PF13406 Transglycosylase SLT domain AhyD4_05360 PF01098 Cell cycle protein AhyD4_05365 PF00905 Penicillin binding protein transpeptidase domain AhyD4_05365 PF03717 Penicillin-binding Protein dimerisation domain AhyD4_05370 PF02590 Predicted SPOUT methyltransferase AhyD4_05380 PF01467 Cytidylyltransferase-like AhyD4_05395 PF13603 Leucyl-tRNA synthetase, Domain 2 AhyD4_05395 PF00133 tRNA synthetases class I (I, L, M and V) AhyD4_05395 PF08264 Anticodon-binding domain of tRNA AhyD4_05400 PF07295 Zinc-ribbon containing domain AhyD4_05405 PF00795 Carbon-nitrogen hydrolase AhyD4_05410 PF03471 Transporter associated domain AhyD4_05410 PF00571 CBS domain AhyD4_05415 PF02130 Uncharacterized protein family UPF0054 AhyD4_05420 PF02562 PhoH-like protein AhyD4_05425 PF01938 TRAM domain AhyD4_05425 PF04055 Radical SAM superfamily AhyD4_05425 PF00919 Uncharacterized protein family UPF0004 AhyD4_05430 PF01494 FAD binding domain AhyD4_05435 PF00857 Isochorismatase family AhyD4_05440 PF00313 'Cold-shock' DNA-binding domain AhyD4_05445 PF05230 MASE2 domain AhyD4_05445 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_05460 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_05470 PF08448 PAS fold AhyD4_05470 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_05480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AhyD4_05480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AhyD4_05490 PF09997 Predicted membrane protein (DUF2238) AhyD4_05495 PF01132 Elongation factor P (EF-P) OB domain AhyD4_05495 PF08207 Elongation factor P (EF-P) KOW-like domain AhyD4_05495 PF09285 Elongation factor P, C-terminal AhyD4_05505 PF00478 IMP dehydrogenase / GMP reductase domain AhyD4_05515 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_05515 PF08521 Two-component sensor kinase N-terminal AhyD4_05515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_05520 PF00486 Transcriptional regulatory protein, C terminal AhyD4_05520 PF00072 Response regulator receiver domain AhyD4_05540 PF00501 AMP-binding enzyme AhyD4_05555 PF06224 Winged helix DNA-binding domain AhyD4_05575 PF02313 Fumarate reductase subunit D AhyD4_05580 PF02300 Fumarate reductase subunit C AhyD4_05585 PF13085 2Fe-2S iron-sulfur cluster binding domain AhyD4_05585 PF13183 4Fe-4S dicluster domain AhyD4_05590 PF02910 Fumarate reductase flavoprotein C-term AhyD4_05590 PF00890 FAD binding domain AhyD4_05595 PF02743 Cache domain AhyD4_05595 PF00672 HAMP domain AhyD4_05595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_05600 PF03009 Glycerophosphoryl diester phosphodiesterase family AhyD4_05605 PF00924 Mechanosensitive ion channel AhyD4_05605 PF12795 Mechanosensitive ion channel porin domain AhyD4_05605 PF12794 Mechanosensitive ion channel inner membrane domain 1 AhyD4_05615 PF08525 Opacity-associated protein A N-terminal motif AhyD4_05615 PF01551 Peptidase family M23 AhyD4_05615 PF01476 LysM domain AhyD4_05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_05630 PF03466 LysR substrate binding domain AhyD4_05645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_05645 PF02743 Cache domain AhyD4_05645 PF00672 HAMP domain AhyD4_05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_05650 PF03466 LysR substrate binding domain AhyD4_05655 PF00905 Penicillin binding protein transpeptidase domain AhyD4_05655 PF00912 Transglycosylase AhyD4_05655 PF17092 Penicillin-binding protein OB-like domain AhyD4_05680 PF03958 Bacterial type II/III secretion system short domain AhyD4_05680 PF07660 Secretin and TonB N terminus short domain AhyD4_05680 PF11741 AMIN domain AhyD4_05680 PF00263 Bacterial type II and III secretion system protein AhyD4_05685 PF01202 Shikimate kinase AhyD4_05690 PF01761 3-dehydroquinate synthase AhyD4_05700 PF02086 D12 class N6 adenine-specific DNA methyltransferase AhyD4_05705 PF00834 Ribulose-phosphate 3 epimerase family AhyD4_05710 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_05715 PF00579 tRNA synthetases class I (W and Y) AhyD4_05725 PF00117 Glutamine amidotransferase class-I AhyD4_05730 PF00202 Aminotransferase class-III AhyD4_05735 PF04958 Arginine N-succinyltransferase beta subunit AhyD4_05740 PF00171 Aldehyde dehydrogenase family AhyD4_05750 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_05755 PF07690 Major Facilitator Superfamily AhyD4_05760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AhyD4_05760 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AhyD4_05760 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AhyD4_05760 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AhyD4_05760 PF10371 Domain of unknown function AhyD4_05770 PF00128 Alpha amylase, catalytic domain AhyD4_05770 PF16657 Maltogenic Amylase, C-terminal domain AhyD4_05790 PF01048 Phosphorylase superfamily AhyD4_05795 PF04973 Nicotinamide mononucleotide transporter AhyD4_05800 PF03600 Citrate transporter AhyD4_05800 PF02080 TrkA-C domain AhyD4_05845 PF01926 50S ribosome-binding GTPase AhyD4_05845 PF06071 Protein of unknown function (DUF933) AhyD4_05850 PF01195 Peptidyl-tRNA hydrolase AhyD4_05855 PF02872 5'-nucleotidase, C-terminal domain AhyD4_05855 PF00149 Calcineurin-like phosphoesterase AhyD4_05860 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AhyD4_05860 PF14572 Phosphoribosyl synthetase-associated domain AhyD4_05875 PF03550 Outer membrane lipoprotein LolB AhyD4_05880 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AhyD4_05880 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AhyD4_05880 PF01488 Shikimate / quinate 5-dehydrogenase AhyD4_05885 PF03462 PCRF domain AhyD4_05885 PF00472 RF-1 domain AhyD4_05890 PF13847 Methyltransferase domain AhyD4_05890 PF17827 PrmC N-terminal domain AhyD4_05900 PF13369 Transglutaminase-like superfamily AhyD4_05905 PF00793 DAHP synthetase I family AhyD4_05910 PF00375 Sodium:dicarboxylate symporter family AhyD4_05915 PF01228 Glycine radical AhyD4_05920 PF03167 Uracil DNA glycosylase superfamily AhyD4_05935 PF00923 Transaldolase/Fructose-6-phosphate aldolase AhyD4_05940 PF01235 Sodium:alanine symporter family AhyD4_05945 PF11992 Domain of unknown function (DUF3488) AhyD4_05945 PF13559 Domain of unknown function (DUF4129) AhyD4_05945 PF01841 Transglutaminase-like superfamily AhyD4_05955 PF07726 ATPase family associated with various cellular activities (AAA) AhyD4_05955 PF17863 AAA lid domain AhyD4_05960 PF00144 Beta-lactamase AhyD4_05965 PF00854 POT family AhyD4_05970 PF03652 Holliday junction resolvase AhyD4_05975 PF02622 Uncharacterized ACR, COG1678 AhyD4_05980 PF12729 Four helix bundle sensory module for signal transduction AhyD4_05980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_05980 PF00672 HAMP domain AhyD4_05985 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AhyD4_05985 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AhyD4_05990 PF04452 RNA methyltransferase AhyD4_05995 PF04231 Endonuclease I AhyD4_06000 PF10263 SprT-like family AhyD4_06000 PF17283 SprT-like zinc ribbon domain AhyD4_06005 PF02772 S-adenosylmethionine synthetase, central domain AhyD4_06005 PF02773 S-adenosylmethionine synthetase, C-terminal domain AhyD4_06005 PF00438 S-adenosylmethionine synthetase, N-terminal domain AhyD4_06010 PF02780 Transketolase, C-terminal domain AhyD4_06010 PF02779 Transketolase, pyrimidine binding domain AhyD4_06010 PF00456 Transketolase, thiamine diphosphate binding domain AhyD4_06020 PF12792 CSS motif domain associated with EAL AhyD4_06020 PF00563 EAL domain AhyD4_06030 PF01042 Endoribonuclease L-PSP AhyD4_06035 PF01965 DJ-1/PfpI family AhyD4_06045 PF03702 Anhydro-N-acetylmuramic acid kinase AhyD4_06050 PF01551 Peptidase family M23 AhyD4_06050 PF08525 Opacity-associated protein A N-terminal motif AhyD4_06050 PF01476 LysM domain AhyD4_06055 PF00579 tRNA synthetases class I (W and Y) AhyD4_06060 PF01204 Trehalase AhyD4_06070 PF01161 Phosphatidylethanolamine-binding protein AhyD4_06080 PF03466 LysR substrate binding domain AhyD4_06080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_06090 PF00155 Aminotransferase class I and II AhyD4_06095 PF07690 Major Facilitator Superfamily AhyD4_06100 PF03466 LysR substrate binding domain AhyD4_06100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_06105 PF00106 short chain dehydrogenase AhyD4_06110 PF01343 Peptidase family S49 AhyD4_06110 PF08496 Peptidase family S49 N-terminal AhyD4_06115 PF04996 Succinylarginine dihydrolase AhyD4_06120 PF08272 Topoisomerase I zinc-ribbon-like AhyD4_06120 PF01131 DNA topoisomerase AhyD4_06120 PF01396 Topoisomerase DNA binding C4 zinc finger AhyD4_06120 PF01751 Toprim domain AhyD4_06135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_06135 PF08447 PAS fold AhyD4_06140 PF02838 Glycosyl hydrolase family 20, domain 2 AhyD4_06140 PF00728 Glycosyl hydrolase family 20, catalytic domain AhyD4_06145 PF01869 BadF/BadG/BcrA/BcrD ATPase family AhyD4_06155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_06155 PF00005 ABC transporter AhyD4_06160 PF00005 ABC transporter AhyD4_06160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_06165 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_06165 PF12911 N-terminal TM domain of oligopeptide transport permease C AhyD4_06170 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_06175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_06180 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_06180 PF09308 LuxQ, periplasmic AhyD4_06180 PF00072 Response regulator receiver domain AhyD4_06180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_06200 PF10725 Protein of unknown function (DUF2517) AhyD4_06210 PF05114 Protein of unknown function (DUF692) AhyD4_06230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_06230 PF08447 PAS fold AhyD4_06230 PF13426 PAS domain AhyD4_06245 PF04632 Fusaric acid resistance protein family AhyD4_06250 PF03453 MoeA N-terminal region (domain I and II) AhyD4_06250 PF03454 MoeA C-terminal region (domain IV) AhyD4_06250 PF00994 Probable molybdopterin binding domain AhyD4_06255 PF12804 MobA-like NTP transferase domain AhyD4_06260 PF00005 ABC transporter AhyD4_06265 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_06270 PF12849 PBP superfamily domain AhyD4_06275 PF00158 Sigma-54 interaction domain AhyD4_06275 PF00072 Response regulator receiver domain AhyD4_06275 PF02954 Bacterial regulatory protein, Fis family AhyD4_06280 PF00989 PAS fold AhyD4_06280 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_06280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_06285 PF12727 PBP superfamily domain AhyD4_06285 PF12728 Helix-turn-helix domain AhyD4_06290 PF02634 FdhD/NarQ family AhyD4_06325 PF12838 4Fe-4S dicluster domain AhyD4_06325 PF00384 Molybdopterin oxidoreductase AhyD4_06325 PF01568 Molydopterin dinucleotide binding domain AhyD4_06325 PF12838 4Fe-4S dicluster domain AhyD4_06325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_06325 PF00384 Molybdopterin oxidoreductase AhyD4_06325 PF01568 Molydopterin dinucleotide binding domain AhyD4_06325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_06325 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AhyD4_06325 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AhyD4_06330 PF13247 4Fe-4S dicluster domain AhyD4_06340 PF00072 Response regulator receiver domain AhyD4_06345 PF00390 Malic enzyme, N-terminal domain AhyD4_06345 PF03949 Malic enzyme, NAD binding domain AhyD4_06350 PF05433 Glycine zipper 2TM domain AhyD4_06350 PF16998 17 kDa outer membrane surface antigen AhyD4_06360 PF00860 Permease family AhyD4_06365 PF10282 Lactonase, 7-bladed beta-propeller AhyD4_06375 PF12794 Mechanosensitive ion channel inner membrane domain 1 AhyD4_06375 PF00924 Mechanosensitive ion channel AhyD4_06375 PF12795 Mechanosensitive ion channel porin domain AhyD4_06380 PF00224 Pyruvate kinase, barrel domain AhyD4_06380 PF02887 Pyruvate kinase, alpha/beta domain AhyD4_06390 PF04151 Bacterial pre-peptidase C-terminal domain AhyD4_06390 PF04389 Peptidase family M28 AhyD4_06395 PF00999 Sodium/hydrogen exchanger family AhyD4_06395 PF02254 TrkA-N domain AhyD4_06405 PF04381 Putative exonuclease, RdgC AhyD4_06415 PF12320 Type 5 capsule protein repressor C-terminal domain AhyD4_06415 PF00149 Calcineurin-like phosphoesterase AhyD4_06420 PF13476 AAA domain AhyD4_06435 PF01292 Prokaryotic cytochrome b561 AhyD4_06445 PF17151 Periplasmic sensor domain AhyD4_06445 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_06450 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AhyD4_06455 PF02896 PEP-utilising enzyme, TIM barrel domain AhyD4_06455 PF00391 PEP-utilising enzyme, mobile domain AhyD4_06455 PF05524 PEP-utilising enzyme, N-terminal AhyD4_06460 PF00381 PTS HPr component phosphorylation site AhyD4_06465 PF00291 Pyridoxal-phosphate dependent enzyme AhyD4_06470 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_06470 PF07724 AAA domain (Cdc48 subfamily) AhyD4_06470 PF17871 AAA lid domain AhyD4_06470 PF10431 C-terminal, D2-small domain, of ClpB protein AhyD4_06470 PF02861 Clp amino terminal domain, pathogenicity island component AhyD4_06480 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AhyD4_06480 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AhyD4_06485 PF01980 tRNA-methyltransferase O AhyD4_06485 PF18389 TrmO C-terminal domain AhyD4_06505 PF00664 ABC transporter transmembrane region AhyD4_06505 PF00005 ABC transporter AhyD4_06510 PF00005 ABC transporter AhyD4_06510 PF00664 ABC transporter transmembrane region AhyD4_06525 PF00072 Response regulator receiver domain AhyD4_06525 PF00486 Transcriptional regulatory protein, C terminal AhyD4_06535 PF03737 Aldolase/RraA AhyD4_06550 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AhyD4_06555 PF00588 SpoU rRNA Methylase family AhyD4_06560 PF03447 Homoserine dehydrogenase, NAD binding domain AhyD4_06560 PF01842 ACT domain AhyD4_06560 PF00742 Homoserine dehydrogenase AhyD4_06560 PF13840 ACT domain AhyD4_06560 PF00696 Amino acid kinase family AhyD4_06565 PF00288 GHMP kinases N terminal domain AhyD4_06565 PF08544 GHMP kinases C terminal AhyD4_06570 PF14821 Threonine synthase N terminus AhyD4_06570 PF00291 Pyridoxal-phosphate dependent enzyme AhyD4_06575 PF13474 SnoaL-like domain AhyD4_06590 PF00005 ABC transporter AhyD4_06590 PF12848 ABC transporter AhyD4_06600 PF01048 Phosphorylase superfamily AhyD4_06615 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_06615 PF00072 Response regulator receiver domain AhyD4_06615 PF01627 Hpt domain AhyD4_06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_06615 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_06615 PF00989 PAS fold AhyD4_06620 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AhyD4_06625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AhyD4_06625 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AhyD4_06630 PF02690 Na+/Pi-cotransporter AhyD4_06640 PF13520 Amino acid permease AhyD4_06650 PF00324 Amino acid permease AhyD4_06655 PF00202 Aminotransferase class-III AhyD4_06660 PF00171 Aldehyde dehydrogenase family AhyD4_06665 PF07883 Cupin domain AhyD4_06665 PF01381 Helix-turn-helix AhyD4_06670 PF01266 FAD dependent oxidoreductase AhyD4_06685 PF00816 H-NS histone family AhyD4_06690 PF00793 DAHP synthetase I family AhyD4_06700 PF08021 Siderophore-interacting FAD-binding domain AhyD4_06700 PF04954 Siderophore-interacting protein AhyD4_06705 PF02321 Outer membrane efflux protein AhyD4_06710 PF00005 ABC transporter AhyD4_06710 PF02687 FtsX-like permease family AhyD4_06710 PF12704 MacB-like periplasmic core domain AhyD4_06715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_06725 PF01368 DHH family AhyD4_06725 PF02833 DHHA2 domain AhyD4_06735 PF02463 RecF/RecN/SMC N terminal domain AhyD4_06740 PF01513 ATP-NAD kinase AhyD4_06745 PF01025 GrpE AhyD4_06750 PF00012 Hsp70 protein AhyD4_06755 PF00226 DnaJ domain AhyD4_06755 PF00684 DnaJ central domain AhyD4_06755 PF01556 DnaJ C terminal domain AhyD4_06760 PF11471 Maltoporin periplasmic N-terminal extension AhyD4_06760 PF02264 LamB porin AhyD4_06765 PF00294 pfkB family carbohydrate kinase AhyD4_06770 PF02378 Phosphotransferase system, EIIC AhyD4_06770 PF00367 phosphotransferase system, EIIB AhyD4_06775 PF00251 Glycosyl hydrolases family 32 N-terminal domain AhyD4_06775 PF08244 Glycosyl hydrolases family 32 C terminal AhyD4_06780 PF13407 Periplasmic binding protein domain AhyD4_06780 PF00356 Bacterial regulatory proteins, lacI family AhyD4_06785 PF02308 MgtC family AhyD4_06800 PF01022 Bacterial regulatory protein, arsR family AhyD4_06805 PF04143 Sulphur transport AhyD4_06820 PF00873 AcrB/AcrD/AcrF family AhyD4_06825 PF00563 EAL domain AhyD4_06825 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_06825 PF03707 Bacterial signalling protein N terminal repeat AhyD4_06830 PF03099 Biotin/lipoate A/B protein ligase family AhyD4_06830 PF10437 Bacterial lipoate protein ligase C-terminus AhyD4_06850 PF00873 AcrB/AcrD/AcrF family AhyD4_06855 PF00529 HlyD membrane-fusion protein of T1SS AhyD4_06855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_06865 PF00873 AcrB/AcrD/AcrF family AhyD4_06870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_06875 PF03372 Endonuclease/Exonuclease/phosphatase family AhyD4_06890 PF07690 Major Facilitator Superfamily AhyD4_06895 PF02424 ApbE family AhyD4_06900 PF00127 Copper binding proteins, plastocyanin/azurin family AhyD4_06915 PF01156 Inosine-uridine preferring nucleoside hydrolase AhyD4_06925 PF00034 Cytochrome c AhyD4_06925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AhyD4_06935 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AhyD4_06935 PF06481 COX Aromatic Rich Motif AhyD4_06940 PF00115 Cytochrome C and Quinol oxidase polypeptide I AhyD4_06945 PF00510 Cytochrome c oxidase subunit III AhyD4_06950 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AhyD4_06955 PF01040 UbiA prenyltransferase family AhyD4_06960 PF07690 Major Facilitator Superfamily AhyD4_06970 PF00072 Response regulator receiver domain AhyD4_06970 PF01627 Hpt domain AhyD4_06970 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_06970 PF00672 HAMP domain AhyD4_06975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AhyD4_06985 PF00486 Transcriptional regulatory protein, C terminal AhyD4_06985 PF00072 Response regulator receiver domain AhyD4_06995 PF01568 Molydopterin dinucleotide binding domain AhyD4_06995 PF00384 Molybdopterin oxidoreductase AhyD4_06995 PF18364 Molybdopterin oxidoreductase N-terminal domain AhyD4_07000 PF02613 Nitrate reductase delta subunit AhyD4_07040 PF04002 RadC-like JAB domain AhyD4_07080 PF03466 LysR substrate binding domain AhyD4_07080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_07095 PF00696 Amino acid kinase family AhyD4_07100 PF06545 Protein of unknown function (DUF1116) AhyD4_07105 PF02629 CoA binding domain AhyD4_07105 PF00549 CoA-ligase AhyD4_07110 PF00857 Isochorismatase family AhyD4_07125 PF05930 Prophage CP4-57 regulatory protein (AlpA) AhyD4_07145 PF07670 Nucleoside recognition AhyD4_07145 PF07662 Na+ dependent nucleoside transporter C-terminus AhyD4_07145 PF01773 Na+ dependent nucleoside transporter N-terminus AhyD4_07175 PF00290 Tryptophan synthase alpha chain AhyD4_07180 PF00291 Pyridoxal-phosphate dependent enzyme AhyD4_07185 PF00218 Indole-3-glycerol phosphate synthase AhyD4_07185 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AhyD4_07190 PF00591 Glycosyl transferase family, a/b domain AhyD4_07190 PF02885 Glycosyl transferase family, helical bundle domain AhyD4_07195 PF00117 Glutamine amidotransferase class-I AhyD4_07195 PF02885 Glycosyl transferase family, helical bundle domain AhyD4_07195 PF00591 Glycosyl transferase family, a/b domain AhyD4_07200 PF00425 chorismate binding enzyme AhyD4_07200 PF04715 Anthranilate synthase component I, N terminal region AhyD4_07205 PF02811 PHP domain AhyD4_07210 PF01300 Telomere recombination AhyD4_07215 PF02616 Segregation and condensation protein ScpA AhyD4_07220 PF04079 Segregation and condensation complex subunit ScpB AhyD4_07225 PF00849 RNA pseudouridylate synthase AhyD4_07225 PF01479 S4 domain AhyD4_07245 PF00440 Bacterial regulatory proteins, tetR family AhyD4_07245 PF08361 MAATS-type transcriptional repressor, C-terminal region AhyD4_07250 PF00529 HlyD membrane-fusion protein of T1SS AhyD4_07250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_07255 PF00873 AcrB/AcrD/AcrF family AhyD4_07260 PF16363 GDP-mannose 4,6 dehydratase AhyD4_07265 PF00483 Nucleotidyl transferase AhyD4_07270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AhyD4_07275 PF01943 Polysaccharide biosynthesis protein AhyD4_07285 PF16363 GDP-mannose 4,6 dehydratase AhyD4_07290 PF01370 NAD dependent epimerase/dehydratase family AhyD4_07295 PF01050 Mannose-6-phosphate isomerase AhyD4_07295 PF00483 Nucleotidyl transferase AhyD4_07300 PF00535 Glycosyl transferase family 2 AhyD4_07310 PF00953 Glycosyl transferase family 4 AhyD4_07315 PF04321 RmlD substrate binding domain AhyD4_07320 PF00483 Nucleotidyl transferase AhyD4_07330 PF02706 Chain length determinant protein AhyD4_07350 PF06082 Exopolysaccharide biosynthesis protein YbjH AhyD4_07360 PF04337 Protein of unknown function, DUF480 AhyD4_07365 PF00271 Helicase conserved C-terminal domain AhyD4_07365 PF00176 SNF2 family N-terminal domain AhyD4_07365 PF04434 SWIM zinc finger AhyD4_07370 PF05472 DNA replication terminus site-binding protein (Ter protein) AhyD4_07380 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AhyD4_07385 PF00676 Dehydrogenase E1 component AhyD4_07390 PF02779 Transketolase, pyrimidine binding domain AhyD4_07390 PF02780 Transketolase, C-terminal domain AhyD4_07395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AhyD4_07395 PF02817 e3 binding domain AhyD4_07395 PF00364 Biotin-requiring enzyme AhyD4_07400 PF00313 'Cold-shock' DNA-binding domain AhyD4_07425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_07430 PF00892 EamA-like transporter family AhyD4_07435 PF08220 DeoR-like helix-turn-helix domain AhyD4_07435 PF00455 DeoR C terminal sensor domain AhyD4_07445 PF04055 Radical SAM superfamily AhyD4_07450 PF00923 Transaldolase/Fructose-6-phosphate aldolase AhyD4_07460 PF11871 Domain of unknown function (DUF3391) AhyD4_07460 PF01966 HD domain AhyD4_07465 PF01479 S4 domain AhyD4_07465 PF00849 RNA pseudouridylate synthase AhyD4_07475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_07480 PF12850 Calcineurin-like phosphoesterase superfamily domain AhyD4_07495 PF13144 Chaperone for flagella basal body P-ring formation AhyD4_07500 PF01584 CheW-like domain AhyD4_07500 PF00072 Response regulator receiver domain AhyD4_07505 PF03705 CheR methyltransferase, all-alpha domain AhyD4_07505 PF01739 CheR methyltransferase, SAM binding domain AhyD4_07510 PF00460 Flagella basal body rod protein AhyD4_07515 PF00460 Flagella basal body rod protein AhyD4_07515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AhyD4_07525 PF00460 Flagella basal body rod protein AhyD4_07525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AhyD4_07525 PF07559 Flagellar basal body protein FlaE AhyD4_07530 PF00460 Flagella basal body rod protein AhyD4_07530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AhyD4_07535 PF00460 Flagella basal body rod protein AhyD4_07535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AhyD4_07540 PF02107 Flagellar L-ring protein AhyD4_07545 PF02119 Flagellar P-ring protein AhyD4_07550 PF10135 Rod binding protein AhyD4_07550 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AhyD4_07555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AhyD4_07555 PF00460 Flagella basal body rod protein AhyD4_07560 PF00669 Bacterial flagellin N-terminal helical region AhyD4_07565 PF00571 CBS domain AhyD4_07565 PF03448 MgtE intracellular N domain AhyD4_07565 PF01769 Divalent cation transporter AhyD4_07570 PF02541 Ppx/GppA phosphatase family AhyD4_07575 PF02503 Polyphosphate kinase middle domain AhyD4_07575 PF17941 Polyphosphate kinase C-terminal domain 1 AhyD4_07575 PF13089 Polyphosphate kinase N-terminal domain AhyD4_07575 PF13090 Polyphosphate kinase C-terminal domain 2 AhyD4_07580 PF01842 ACT domain AhyD4_07590 PF00158 Sigma-54 interaction domain AhyD4_07590 PF02954 Bacterial regulatory protein, Fis family AhyD4_07590 PF00072 Response regulator receiver domain AhyD4_07595 PF00989 PAS fold AhyD4_07595 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_07595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_07600 PF00158 Sigma-54 interaction domain AhyD4_07600 PF02954 Bacterial regulatory protein, Fis family AhyD4_07605 PF01784 NIF3 (NGG1p interacting factor 3) AhyD4_07610 PF00551 Formyl transferase AhyD4_07615 PF02769 AIR synthase related protein, C-terminal domain AhyD4_07615 PF00586 AIR synthase related protein, N-terminal domain AhyD4_07630 PF00308 Bacterial dnaA protein AhyD4_07635 PF00463 Isocitrate lyase family AhyD4_07640 PF01274 Malate synthase AhyD4_07650 PF14437 MafB19-like deaminase AhyD4_07655 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_07660 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_07670 PF01895 PhoU domain AhyD4_07675 PF00571 CBS domain AhyD4_07675 PF03471 Transporter associated domain AhyD4_07675 PF01595 Cyclin M transmembrane N-terminal domain AhyD4_07685 PF02310 B12 binding domain AhyD4_07685 PF02607 B12 binding domain AhyD4_07685 PF00809 Pterin binding enzyme AhyD4_07685 PF02574 Homocysteine S-methyltransferase AhyD4_07685 PF02965 Vitamin B12 dependent methionine synthase, activation domain AhyD4_07690 PF13520 Amino acid permease AhyD4_07695 PF04116 Fatty acid hydroxylase superfamily AhyD4_07705 PF00005 ABC transporter AhyD4_07710 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_07715 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_07725 PF07690 Major Facilitator Superfamily AhyD4_07730 PF05231 MASE1 AhyD4_07730 PF07730 Histidine kinase AhyD4_07730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_07735 PF00196 Bacterial regulatory proteins, luxR family AhyD4_07735 PF00072 Response regulator receiver domain AhyD4_07740 PF01272 Transcription elongation factor, GreA/GreB, C-term AhyD4_07740 PF14760 Rnk N-terminus AhyD4_07760 PF00245 Alkaline phosphatase AhyD4_07765 PF00245 Alkaline phosphatase AhyD4_07770 PF01926 50S ribosome-binding GTPase AhyD4_07775 PF07690 Major Facilitator Superfamily AhyD4_07780 PF00850 Histone deacetylase domain AhyD4_07790 PF06733 DEAD_2 AhyD4_07790 PF13307 Helicase C-terminal domain AhyD4_07795 PF13609 Gram-negative porin AhyD4_07805 PF00155 Aminotransferase class I and II AhyD4_07810 PF05872 Bacterial protein of unknown function (DUF853) AhyD4_07875 PF00155 Aminotransferase class I and II AhyD4_07875 PF00392 Bacterial regulatory proteins, gntR family AhyD4_07880 PF00701 Dihydrodipicolinate synthetase family AhyD4_07890 PF01037 Lrp/AsnC ligand binding domain AhyD4_07920 PF00816 H-NS histone family AhyD4_07960 PF00664 ABC transporter transmembrane region AhyD4_07960 PF00005 ABC transporter AhyD4_07965 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AhyD4_07970 PF03966 Trm112p-like protein AhyD4_07975 PF02348 Cytidylyltransferase AhyD4_07980 PF00072 Response regulator receiver domain AhyD4_07980 PF00196 Bacterial regulatory proteins, luxR family AhyD4_07985 PF02151 UvrB/uvrC motif AhyD4_07985 PF01541 GIY-YIG catalytic domain AhyD4_07985 PF08459 UvrC Helix-hairpin-helix N-terminal AhyD4_07990 PF01066 CDP-alcohol phosphatidyltransferase AhyD4_08010 PF00589 Phage integrase family AhyD4_08010 PF13356 Arm DNA-binding domain AhyD4_08035 PF03050 Transposase IS66 family AhyD4_08035 PF13817 IS66 C-terminal element AhyD4_08035 PF13007 Transposase C of IS166 homeodomain AhyD4_08035 PF13005 zinc-finger binding domain of transposase IS66 AhyD4_08045 PF00171 Aldehyde dehydrogenase family AhyD4_08055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AhyD4_08055 PF00205 Thiamine pyrophosphate enzyme, central domain AhyD4_08055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AhyD4_08060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AhyD4_08060 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AhyD4_08065 PF13407 Periplasmic binding protein domain AhyD4_08070 PF00005 ABC transporter AhyD4_08075 PF02653 Branched-chain amino acid transport system / permease component AhyD4_08080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AhyD4_08080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AhyD4_08085 PF00294 pfkB family carbohydrate kinase AhyD4_08090 PF01261 Xylose isomerase-like TIM barrel AhyD4_08095 PF04962 KduI/IolB family AhyD4_08100 PF05598 Transposase domain (DUF772) AhyD4_08100 PF01609 Transposase DDE domain AhyD4_08105 PF01527 Transposase AhyD4_08110 PF13276 HTH-like domain AhyD4_08110 PF00665 Integrase core domain AhyD4_08145 PF01757 Acyltransferase family AhyD4_08155 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB AhyD4_08160 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AhyD4_08180 PF00037 4Fe-4S binding domain AhyD4_08180 PF13247 4Fe-4S dicluster domain AhyD4_08185 PF03916 Polysulphide reductase, NrfD AhyD4_08190 PF00149 Calcineurin-like phosphoesterase AhyD4_08200 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AhyD4_08205 PF01406 tRNA synthetases class I (C) catalytic domain AhyD4_08205 PF09190 DALR domain AhyD4_08220 PF13185 GAF domain AhyD4_08220 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_08250 PF01169 Uncharacterized protein family UPF0016 AhyD4_08255 PF01253 Translation initiation factor SUI1 AhyD4_08265 PF07670 Nucleoside recognition AhyD4_08265 PF07664 Ferrous iron transport protein B C terminus AhyD4_08265 PF02421 Ferrous iron transport protein B AhyD4_08280 PF00483 Nucleotidyl transferase AhyD4_08285 PF00437 Type II/IV secretion system protein AhyD4_08295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_08295 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_08295 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_08295 PF01627 Hpt domain AhyD4_08295 PF00989 PAS fold AhyD4_08295 PF00072 Response regulator receiver domain AhyD4_08300 PF01032 FecCD transport family AhyD4_08305 PF00005 ABC transporter AhyD4_08310 PF00583 Acetyltransferase (GNAT) family AhyD4_08315 PF00793 DAHP synthetase I family AhyD4_08320 PF01219 Prokaryotic diacylglycerol kinase AhyD4_08325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AhyD4_08325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AhyD4_08325 PF01842 ACT domain AhyD4_08330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AhyD4_08335 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AhyD4_08340 PF01812 5-formyltetrahydrofolate cyclo-ligase family AhyD4_08350 PF01113 Dihydrodipicolinate reductase, N-terminus AhyD4_08350 PF05173 Dihydrodipicolinate reductase, C-terminus AhyD4_08355 PF00117 Glutamine amidotransferase class-I AhyD4_08355 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AhyD4_08360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AhyD4_08360 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AhyD4_08360 PF02142 MGS-like domain AhyD4_08365 PF00682 HMGL-like AhyD4_08365 PF08502 LeuA allosteric (dimerisation) domain AhyD4_08370 PF07759 Protein of unknown function (DUF1615) AhyD4_08395 PF13302 Acetyltransferase (GNAT) domain AhyD4_08400 PF00270 DEAD/DEAH box helicase AhyD4_08400 PF00271 Helicase conserved C-terminal domain AhyD4_08410 PF14521 Lysine-specific metallo-endopeptidase AhyD4_08425 PF09278 MerR, DNA binding AhyD4_08425 PF00376 MerR family regulatory protein AhyD4_08440 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_08445 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_08455 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AhyD4_08455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_08460 PF04898 Glutamate synthase central domain AhyD4_08460 PF01493 GXGXG motif AhyD4_08460 PF01645 Conserved region in glutamate synthase AhyD4_08460 PF00310 Glutamine amidotransferases class-II AhyD4_08465 PF04055 Radical SAM superfamily AhyD4_08465 PF16199 Radical_SAM C-terminal domain AhyD4_08470 PF00664 ABC transporter transmembrane region AhyD4_08470 PF03412 Peptidase C39 family AhyD4_08470 PF00005 ABC transporter AhyD4_08520 PF00324 Amino acid permease AhyD4_08530 PF03618 Kinase/pyrophosphorylase AhyD4_08535 PF00391 PEP-utilising enzyme, mobile domain AhyD4_08535 PF02896 PEP-utilising enzyme, TIM barrel domain AhyD4_08535 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AhyD4_08545 PF01915 Glycosyl hydrolase family 3 C-terminal domain AhyD4_08545 PF00933 Glycosyl hydrolase family 3 N terminal domain AhyD4_08545 PF14310 Fibronectin type III-like domain AhyD4_08555 PF01483 Proprotein convertase P-domain AhyD4_08555 PF00082 Subtilase family AhyD4_08575 PF07969 Amidohydrolase family AhyD4_08580 PF03180 NLPA lipoprotein AhyD4_08585 PF01569 PAP2 superfamily AhyD4_08590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AhyD4_08590 PF11890 Domain of unknown function (DUF3410) AhyD4_08590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AhyD4_08595 PF01118 Semialdehyde dehydrogenase, NAD binding domain AhyD4_08595 PF02774 Semialdehyde dehydrogenase, dimerisation domain AhyD4_08605 PF01416 tRNA pseudouridine synthase AhyD4_08610 PF01039 Carboxyl transferase domain AhyD4_08610 PF17848 Acetyl-coA carboxylase zinc finger domain AhyD4_08615 PF08245 Mur ligase middle domain AhyD4_08615 PF02875 Mur ligase family, glutamate ligase domain AhyD4_08620 PF05036 Sporulation related domain AhyD4_08625 PF04358 DsrC like protein AhyD4_08630 PF12805 FUSC-like inner membrane protein yccS AhyD4_08635 PF01027 Inhibitor of apoptosis-promoting Bax1 AhyD4_08655 PF00884 Sulfatase AhyD4_08655 PF08019 Phosphoethanolamine transferase EptA/EptB AhyD4_08665 PF03706 Lysylphosphatidylglycerol synthase TM region AhyD4_08665 PF09924 Uncharacterised conserved protein (DUF2156) AhyD4_08675 PF08447 PAS fold AhyD4_08675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_08680 PF00563 EAL domain AhyD4_08680 PF13426 PAS domain AhyD4_08680 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_08685 PF00849 RNA pseudouridylate synthase AhyD4_08695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AhyD4_08700 PF04209 homogentisate 1,2-dioxygenase AhyD4_08710 PF02798 Glutathione S-transferase, N-terminal domain AhyD4_08710 PF14497 Glutathione S-transferase, C-terminal domain AhyD4_08715 PF13417 Glutathione S-transferase, N-terminal domain AhyD4_08715 PF00043 Glutathione S-transferase, C-terminal domain AhyD4_08725 PF13537 Glutamine amidotransferase domain AhyD4_08725 PF00733 Asparagine synthase AhyD4_08735 PF02254 TrkA-N domain AhyD4_08735 PF00999 Sodium/hydrogen exchanger family AhyD4_08740 PF13344 Haloacid dehalogenase-like hydrolase AhyD4_08745 PF00962 Adenosine/AMP deaminase AhyD4_08750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AhyD4_08755 PF03471 Transporter associated domain AhyD4_08755 PF03741 Integral membrane protein TerC family AhyD4_08765 PF13183 4Fe-4S dicluster domain AhyD4_08765 PF01565 FAD binding domain AhyD4_08765 PF02913 FAD linked oxidases, C-terminal domain AhyD4_08775 PF03061 Thioesterase superfamily AhyD4_08780 PF03880 DbpA RNA binding domain AhyD4_08780 PF00271 Helicase conserved C-terminal domain AhyD4_08780 PF00270 DEAD/DEAH box helicase AhyD4_08785 PF13726 Na+-H+ antiporter family AhyD4_08785 PF03553 Na+/H+ antiporter family AhyD4_08790 PF00929 Exonuclease AhyD4_08795 PF12729 Four helix bundle sensory module for signal transduction AhyD4_08795 PF00672 HAMP domain AhyD4_08795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_08800 PF18393 MotY N-terminal domain AhyD4_08800 PF00691 OmpA family AhyD4_08805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AhyD4_08810 PF00730 HhH-GPD superfamily base excision DNA repair protein AhyD4_08810 PF00633 Helix-hairpin-helix motif AhyD4_08810 PF10576 Iron-sulfur binding domain of endonuclease III AhyD4_08815 PF02508 Rnf-Nqr subunit, membrane protein AhyD4_08820 PF04205 FMN-binding domain AhyD4_08825 PF03116 NQR2, RnfD, RnfE family AhyD4_08830 PF13375 RnfC Barrel sandwich hybrid domain AhyD4_08830 PF12838 4Fe-4S dicluster domain AhyD4_08830 PF10531 SLBB domain AhyD4_08830 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AhyD4_08835 PF04060 Putative Fe-S cluster AhyD4_08840 PF02508 Rnf-Nqr subunit, membrane protein AhyD4_08845 PF00892 EamA-like transporter family AhyD4_08855 PF08447 PAS fold AhyD4_08855 PF13426 PAS domain AhyD4_08855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_08860 PF07055 Enoyl reductase FAD binding domain AhyD4_08860 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AhyD4_08860 PF12241 Trans-2-enoyl-CoA reductase catalytic region AhyD4_08865 PF03606 C4-dicarboxylate anaerobic carrier AhyD4_08870 PF00155 Aminotransferase class I and II AhyD4_08880 PF00462 Glutaredoxin AhyD4_08885 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AhyD4_08890 PF04851 Type III restriction enzyme, res subunit AhyD4_08890 PF00271 Helicase conserved C-terminal domain AhyD4_08895 PF00529 HlyD membrane-fusion protein of T1SS AhyD4_08895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_08900 PF11742 Protein of unknown function (DUF3302) AhyD4_08905 PF02554 Carbon starvation protein CstA AhyD4_08910 PF04397 LytTr DNA-binding domain AhyD4_08910 PF00072 Response regulator receiver domain AhyD4_08915 PF06580 Histidine kinase AhyD4_08915 PF07694 5TMR of 5TMR-LYT AhyD4_08920 PF01966 HD domain AhyD4_08925 PF00171 Aldehyde dehydrogenase family AhyD4_08925 PF00465 Iron-containing alcohol dehydrogenase AhyD4_08935 PF01914 MarC family integral membrane protein AhyD4_08940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_08945 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_08950 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_08950 PF12911 N-terminal TM domain of oligopeptide transport permease C AhyD4_08955 PF00005 ABC transporter AhyD4_08955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_08965 PF00005 ABC transporter AhyD4_08965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_08970 PF03741 Integral membrane protein TerC family AhyD4_08975 PF01168 Alanine racemase, N-terminal domain AhyD4_08975 PF00842 Alanine racemase, C-terminal domain AhyD4_08985 PF00375 Sodium:dicarboxylate symporter family AhyD4_09000 PF01979 Amidohydrolase family AhyD4_09010 PF00672 HAMP domain AhyD4_09010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_09015 PF01230 HIT domain AhyD4_09050 PF02355 Protein export membrane protein AhyD4_09050 PF13721 SecD export protein N-terminal TM region AhyD4_09050 PF07549 SecD/SecF GG Motif AhyD4_09055 PF02355 Protein export membrane protein AhyD4_09055 PF07549 SecD/SecF GG Motif AhyD4_09065 PF05661 Protein of unknown function (DUF808) AhyD4_09070 PF08439 Oligopeptidase F AhyD4_09070 PF01432 Peptidase family M3 AhyD4_09075 PF01432 Peptidase family M3 AhyD4_09075 PF08439 Oligopeptidase F AhyD4_09080 PF00860 Permease family AhyD4_09085 PF05728 Uncharacterised protein family (UPF0227) AhyD4_09090 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_09110 PF01906 Putative heavy-metal-binding AhyD4_09120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AhyD4_09120 PF14824 Sirohaem biosynthesis protein central AhyD4_09120 PF10414 Sirohaem synthase dimerisation region AhyD4_09125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AhyD4_09125 PF13187 4Fe-4S dicluster domain AhyD4_09125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AhyD4_09130 PF00175 Oxidoreductase NAD-binding domain AhyD4_09130 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AhyD4_09135 PF17179 4Fe-4S dicluster domain AhyD4_09140 PF01734 Patatin-like phospholipase AhyD4_09145 PF17676 LD-carboxypeptidase C-terminal domain AhyD4_09145 PF02016 LD-carboxypeptidase N-terminal domain AhyD4_09150 PF00884 Sulfatase AhyD4_09160 PF00696 Amino acid kinase family AhyD4_09160 PF01842 ACT domain AhyD4_09165 PF00583 Acetyltransferase (GNAT) family AhyD4_09165 PF00696 Amino acid kinase family AhyD4_09170 PF01625 Peptide methionine sulfoxide reductase AhyD4_09195 PF00561 alpha/beta hydrolase fold AhyD4_09200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AhyD4_09210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_09210 PF03466 LysR substrate binding domain AhyD4_09215 PF02652 L-lactate permease AhyD4_09220 PF02754 Cysteine-rich domain AhyD4_09225 PF11870 Domain of unknown function (DUF3390) AhyD4_09225 PF13183 4Fe-4S dicluster domain AhyD4_09225 PF02589 LUD domain AhyD4_09230 PF02589 LUD domain AhyD4_09235 PF02913 FAD linked oxidases, C-terminal domain AhyD4_09235 PF01565 FAD binding domain AhyD4_09250 PF00005 ABC transporter AhyD4_09260 PF07690 Major Facilitator Superfamily AhyD4_09275 PF01593 Flavin containing amine oxidoreductase AhyD4_09280 PF03239 Iron permease FTR1 family AhyD4_09295 PF03350 Uncharacterized protein family, UPF0114 AhyD4_09310 PF00916 Sulfate permease family AhyD4_09310 PF01740 STAS domain AhyD4_09345 PF01527 Transposase AhyD4_09355 PF01527 Transposase AhyD4_09365 PF13276 HTH-like domain AhyD4_09365 PF13333 Integrase core domain AhyD4_09365 PF00665 Integrase core domain AhyD4_09380 PF00842 Alanine racemase, C-terminal domain AhyD4_09380 PF01168 Alanine racemase, N-terminal domain AhyD4_09385 PF00672 HAMP domain AhyD4_09385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_09385 PF12729 Four helix bundle sensory module for signal transduction AhyD4_09390 PF00563 EAL domain AhyD4_09390 PF03707 Bacterial signalling protein N terminal repeat AhyD4_09390 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_09395 PF01339 CheB methylesterase AhyD4_09395 PF00072 Response regulator receiver domain AhyD4_09400 PF01739 CheR methyltransferase, SAM binding domain AhyD4_09400 PF03705 CheR methyltransferase, all-alpha domain AhyD4_09405 PF01584 CheW-like domain AhyD4_09410 PF17202 Single cache domain 3 AhyD4_09410 PF00672 HAMP domain AhyD4_09410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_09415 PF02895 Signal transducing histidine kinase, homodimeric domain AhyD4_09415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_09415 PF01627 Hpt domain AhyD4_09415 PF09078 CheY binding AhyD4_09415 PF01584 CheW-like domain AhyD4_09425 PF00072 Response regulator receiver domain AhyD4_09430 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AhyD4_09430 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AhyD4_09435 PF13247 4Fe-4S dicluster domain AhyD4_09440 PF03916 Polysulphide reductase, NrfD AhyD4_09445 PF00374 Nickel-dependent hydrogenase AhyD4_09450 PF01750 Hydrogenase maturation protease AhyD4_09455 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE AhyD4_09460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_09465 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_09470 PF12911 N-terminal TM domain of oligopeptide transport permease C AhyD4_09470 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_09475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_09475 PF00005 ABC transporter AhyD4_09480 PF00005 ABC transporter AhyD4_09480 PF08402 TOBE domain AhyD4_09485 PF02492 CobW/HypB/UreG, nucleotide-binding domain AhyD4_09490 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AhyD4_09495 PF00586 AIR synthase related protein, N-terminal domain AhyD4_09495 PF02769 AIR synthase related protein, C-terminal domain AhyD4_09500 PF01924 Hydrogenase formation hypA family AhyD4_09505 PF01455 HupF/HypC family AhyD4_09510 PF07503 HypF finger AhyD4_09510 PF01300 Telomere recombination AhyD4_09510 PF17788 HypF Kae1-like domain AhyD4_09510 PF00708 Acylphosphatase AhyD4_09515 PF03144 Elongation factor Tu domain 2 AhyD4_09515 PF00009 Elongation factor Tu GTP binding domain AhyD4_09515 PF09105 Elongation factor SelB, winged helix AhyD4_09515 PF09106 Elongation factor SelB, winged helix AhyD4_09515 PF09107 Elongation factor SelB, winged helix AhyD4_09520 PF03841 L-seryl-tRNA selenium transferase AhyD4_09520 PF12390 Selenocysteine synthase N terminal AhyD4_09525 PF01750 Hydrogenase maturation protease AhyD4_09530 PF07450 Formate hydrogenlyase maturation protein HycH AhyD4_09535 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AhyD4_09540 PF12838 4Fe-4S dicluster domain AhyD4_09545 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AhyD4_09545 PF00374 Nickel-dependent hydrogenase AhyD4_09545 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AhyD4_09550 PF00146 NADH dehydrogenase AhyD4_09555 PF00361 Proton-conducting membrane transporter AhyD4_09560 PF00037 4Fe-4S binding domain AhyD4_09560 PF12798 4Fe-4S binding domain AhyD4_09565 PF02705 K+ potassium transporter AhyD4_09570 PF13247 4Fe-4S dicluster domain AhyD4_09570 PF12800 4Fe-4S binding domain AhyD4_09575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_09575 PF01568 Molydopterin dinucleotide binding domain AhyD4_09575 PF00384 Molybdopterin oxidoreductase AhyD4_09580 PF01568 Molydopterin dinucleotide binding domain AhyD4_09580 PF00384 Molybdopterin oxidoreductase AhyD4_09580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_09590 PF00158 Sigma-54 interaction domain AhyD4_09590 PF02954 Bacterial regulatory protein, Fis family AhyD4_09590 PF01590 GAF domain AhyD4_09595 PF02634 FdhD/NarQ family AhyD4_09600 PF02132 RecR protein AhyD4_09600 PF13662 Toprim domain AhyD4_09605 PF00183 Hsp90 protein AhyD4_09605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_09610 PF05191 Adenylate kinase, active site lid AhyD4_09615 PF00762 Ferrochelatase AhyD4_09625 PF00294 pfkB family carbohydrate kinase AhyD4_09645 PF00483 Nucleotidyl transferase AhyD4_09655 PF07273 Protein of unknown function (DUF1439) AhyD4_09660 PF00425 chorismate binding enzyme AhyD4_09665 PF13193 AMP-binding enzyme C-terminal domain AhyD4_09665 PF00501 AMP-binding enzyme AhyD4_09670 PF00550 Phosphopantetheine attachment site AhyD4_09670 PF00857 Isochorismatase family AhyD4_09675 PF00668 Condensation domain AhyD4_09675 PF00550 Phosphopantetheine attachment site AhyD4_09675 PF13193 AMP-binding enzyme C-terminal domain AhyD4_09675 PF00975 Thioesterase domain AhyD4_09675 PF00501 AMP-binding enzyme AhyD4_09685 PF07993 Male sterility protein AhyD4_09685 PF00668 Condensation domain AhyD4_09685 PF00550 Phosphopantetheine attachment site AhyD4_09685 PF13193 AMP-binding enzyme C-terminal domain AhyD4_09685 PF00501 AMP-binding enzyme AhyD4_09690 PF00975 Thioesterase domain AhyD4_09690 PF13193 AMP-binding enzyme C-terminal domain AhyD4_09690 PF00501 AMP-binding enzyme AhyD4_09690 PF00668 Condensation domain AhyD4_09690 PF00550 Phosphopantetheine attachment site AhyD4_09695 PF01497 Periplasmic binding protein AhyD4_09700 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AhyD4_09700 PF01648 4'-phosphopantetheinyl transferase superfamily AhyD4_09705 PF00005 ABC transporter AhyD4_09710 PF01032 FecCD transport family AhyD4_09715 PF01032 FecCD transport family AhyD4_09720 PF07715 TonB-dependent Receptor Plug Domain AhyD4_09720 PF00593 TonB dependent receptor AhyD4_09735 PF11143 Protein of unknown function (DUF2919) AhyD4_09740 PF01544 CorA-like Mg2+ transporter protein AhyD4_09750 PF01012 Electron transfer flavoprotein domain AhyD4_09755 PF00766 Electron transfer flavoprotein FAD-binding domain AhyD4_09755 PF01012 Electron transfer flavoprotein domain AhyD4_09760 PF00266 Aminotransferase class-V AhyD4_09765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AhyD4_09770 PF00793 DAHP synthetase I family AhyD4_09775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_09775 PF00672 HAMP domain AhyD4_09780 PF04055 Radical SAM superfamily AhyD4_09785 PF02601 Exonuclease VII, large subunit AhyD4_09785 PF13742 OB-fold nucleic acid binding domain AhyD4_09790 PF00892 EamA-like transporter family AhyD4_09795 PF02472 Biopolymer transport protein ExbD/TolR AhyD4_09800 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_09810 PF02705 K+ potassium transporter AhyD4_09815 PF00478 IMP dehydrogenase / GMP reductase domain AhyD4_09815 PF00571 CBS domain AhyD4_09820 PF02540 NAD synthase AhyD4_09820 PF00117 Glutamine amidotransferase class-I AhyD4_09820 PF00958 GMP synthase C terminal domain AhyD4_09825 PF00589 Phage integrase family AhyD4_09825 PF13356 Arm DNA-binding domain AhyD4_09875 PF12833 Helix-turn-helix domain AhyD4_09875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AhyD4_09875 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AhyD4_09875 PF02805 Metal binding domain of Ada AhyD4_09890 PF05724 Thiopurine S-methyltransferase (TPMT) AhyD4_09895 PF00675 Insulinase (Peptidase family M16) AhyD4_09895 PF05193 Peptidase M16 inactive domain AhyD4_09900 PF00300 Histidine phosphatase superfamily (branch 1) AhyD4_09910 PF00892 EamA-like transporter family AhyD4_09915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_09920 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AhyD4_09925 PF03461 TRCF domain AhyD4_09925 PF17757 UvrB interaction domain AhyD4_09925 PF00271 Helicase conserved C-terminal domain AhyD4_09925 PF00270 DEAD/DEAH box helicase AhyD4_09925 PF02559 CarD-like/TRCF domain AhyD4_09935 PF02687 FtsX-like permease family AhyD4_09935 PF12704 MacB-like periplasmic core domain AhyD4_09940 PF00005 ABC transporter AhyD4_09945 PF12704 MacB-like periplasmic core domain AhyD4_09945 PF02687 FtsX-like permease family AhyD4_09960 PF05697 Bacterial trigger factor protein (TF) AhyD4_09960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AhyD4_09960 PF05698 Bacterial trigger factor protein (TF) C-terminus AhyD4_09965 PF00574 Clp protease AhyD4_09970 PF07724 AAA domain (Cdc48 subfamily) AhyD4_09970 PF06689 ClpX C4-type zinc finger AhyD4_09970 PF10431 C-terminal, D2-small domain, of ClpB protein AhyD4_09975 PF02190 ATP-dependent protease La (LON) substrate-binding domain AhyD4_09975 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_09975 PF05362 Lon protease (S16) C-terminal proteolytic domain AhyD4_09985 PF13145 PPIC-type PPIASE domain AhyD4_09990 PF00005 ABC transporter AhyD4_09990 PF12848 ABC transporter AhyD4_09995 PF00474 Sodium:solute symporter family AhyD4_10000 PF04341 Protein of unknown function, DUF485 AhyD4_10015 PF00378 Enoyl-CoA hydratase/isomerase AhyD4_10050 PF01235 Sodium:alanine symporter family AhyD4_10060 PF06167 Glucose-regulated metallo-peptidase M90 AhyD4_10065 PF01184 GPR1/FUN34/yaaH family AhyD4_10080 PF00376 MerR family regulatory protein AhyD4_10080 PF09278 MerR, DNA binding AhyD4_10085 PF00682 HMGL-like AhyD4_10090 PF00364 Biotin-requiring enzyme AhyD4_10090 PF00289 Biotin carboxylase, N-terminal domain AhyD4_10090 PF02785 Biotin carboxylase C-terminal domain AhyD4_10090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AhyD4_10095 PF00378 Enoyl-CoA hydratase/isomerase AhyD4_10100 PF01039 Carboxyl transferase domain AhyD4_10105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AhyD4_10105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AhyD4_10105 PF02770 Acyl-CoA dehydrogenase, middle domain AhyD4_10110 PF00171 Aldehyde dehydrogenase family AhyD4_10115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AhyD4_10115 PF02770 Acyl-CoA dehydrogenase, middle domain AhyD4_10115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AhyD4_10120 PF00378 Enoyl-CoA hydratase/isomerase AhyD4_10125 PF00378 Enoyl-CoA hydratase/isomerase AhyD4_10130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AhyD4_10130 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AhyD4_10140 PF13520 Amino acid permease AhyD4_10145 PF01925 Sulfite exporter TauE/SafE AhyD4_10180 PF04002 RadC-like JAB domain AhyD4_10190 PF00239 Resolvase, N terminal domain AhyD4_10190 PF02796 Helix-turn-helix domain of resolvase AhyD4_10205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_10205 PF03466 LysR substrate binding domain AhyD4_10210 PF12146 Serine aminopeptidase, S33 AhyD4_10215 PF00326 Prolyl oligopeptidase family AhyD4_10215 PF07676 WD40-like Beta Propeller Repeat AhyD4_10215 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AhyD4_10225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_10225 PF03466 LysR substrate binding domain AhyD4_10230 PF00248 Aldo/keto reductase family AhyD4_10240 PF00248 Aldo/keto reductase family AhyD4_10245 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_10245 PF07694 5TMR of 5TMR-LYT AhyD4_10250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_10250 PF03466 LysR substrate binding domain AhyD4_10255 PF00232 Glycosyl hydrolase family 1 AhyD4_10260 PF00563 EAL domain AhyD4_10260 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_10260 PF03707 Bacterial signalling protein N terminal repeat AhyD4_10260 PF13188 PAS domain AhyD4_10270 PF01966 HD domain AhyD4_10280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_10280 PF03466 LysR substrate binding domain AhyD4_10285 PF01261 Xylose isomerase-like TIM barrel AhyD4_10290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AhyD4_10290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AhyD4_10295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_10295 PF03466 LysR substrate binding domain AhyD4_10305 PF03279 Bacterial lipid A biosynthesis acyltransferase AhyD4_10310 PF03279 Bacterial lipid A biosynthesis acyltransferase AhyD4_10325 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_10325 PF17151 Periplasmic sensor domain AhyD4_10335 PF00136 DNA polymerase family B AhyD4_10335 PF03104 DNA polymerase family B, exonuclease domain AhyD4_10365 PF01554 MatE AhyD4_10370 PF06786 Uncharacterised protein family (UPF0253) AhyD4_10375 PF00677 Lumazine binding domain AhyD4_10385 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_10390 PF02222 ATP-grasp domain AhyD4_10390 PF01370 NAD dependent epimerase/dehydratase family AhyD4_10395 PF00892 EamA-like transporter family AhyD4_10400 PF02525 Flavodoxin-like fold AhyD4_10425 PF13509 S1 domain AhyD4_10425 PF17783 CvfB-like winged helix domain AhyD4_10435 PF04269 Protein of unknown function, DUF440 AhyD4_10440 PF00912 Transglycosylase AhyD4_10445 PF04269 Protein of unknown function, DUF440 AhyD4_10450 PF03776 Septum formation topological specificity factor MinE AhyD4_10455 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AhyD4_10460 PF03775 Septum formation inhibitor MinC, C-terminal domain AhyD4_10460 PF05209 Septum formation inhibitor MinC, N-terminal domain AhyD4_10465 PF05166 YcgL domain AhyD4_10470 PF13406 Transglycosylase SLT domain AhyD4_10475 PF03313 Serine dehydratase alpha chain AhyD4_10475 PF03315 Serine dehydratase beta chain AhyD4_10480 PF03313 Serine dehydratase alpha chain AhyD4_10480 PF03315 Serine dehydratase beta chain AhyD4_10485 PF06865 Pyrimidine/purine nucleoside phosphorylase AhyD4_10490 PF00375 Sodium:dicarboxylate symporter family AhyD4_10495 PF00376 MerR family regulatory protein AhyD4_10495 PF09278 MerR, DNA binding AhyD4_10500 PF02803 Thiolase, C-terminal domain AhyD4_10500 PF00108 Thiolase, N-terminal domain AhyD4_10505 PF00563 EAL domain AhyD4_10505 PF08668 HDOD domain AhyD4_10515 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AhyD4_10525 PF04542 Sigma-70 region 2 AhyD4_10525 PF08281 Sigma-70, region 4 AhyD4_10550 PF01882 Protein of unknown function DUF58 AhyD4_10555 PF17863 AAA lid domain AhyD4_10555 PF07726 ATPase family associated with various cellular activities (AAA) AhyD4_10560 PF02803 Thiolase, C-terminal domain AhyD4_10560 PF00108 Thiolase, N-terminal domain AhyD4_10565 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AhyD4_10565 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AhyD4_10565 PF00378 Enoyl-CoA hydratase/isomerase AhyD4_10570 PF07152 YaeQ protein AhyD4_10590 PF10123 Mu-like prophage I protein AhyD4_10600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AhyD4_10600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AhyD4_10605 PF00291 Pyridoxal-phosphate dependent enzyme AhyD4_10610 PF07687 Peptidase dimerisation domain AhyD4_10610 PF01546 Peptidase family M20/M25/M40 AhyD4_10615 PF01979 Amidohydrolase family AhyD4_10620 PF00696 Amino acid kinase family AhyD4_10625 PF00892 EamA-like transporter family AhyD4_10630 PF02625 XdhC and CoxI family AhyD4_10630 PF13478 XdhC Rossmann domain AhyD4_10640 PF12804 MobA-like NTP transferase domain AhyD4_10645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AhyD4_10645 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_10650 PF01979 Amidohydrolase family AhyD4_10655 PF00941 FAD binding domain in molybdopterin dehydrogenase AhyD4_10660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AhyD4_10660 PF01799 [2Fe-2S] binding domain AhyD4_10660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AhyD4_10665 PF00860 Permease family AhyD4_10670 PF01979 Amidohydrolase family AhyD4_10675 PF00860 Permease family AhyD4_10680 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AhyD4_10680 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AhyD4_10685 PF00941 FAD binding domain in molybdopterin dehydrogenase AhyD4_10685 PF03450 CO dehydrogenase flavoprotein C-terminal domain AhyD4_10690 PF00111 2Fe-2S iron-sulfur cluster binding domain AhyD4_10690 PF01799 [2Fe-2S] binding domain AhyD4_10700 PF05433 Glycine zipper 2TM domain AhyD4_10710 PF03606 C4-dicarboxylate anaerobic carrier AhyD4_10715 PF13193 AMP-binding enzyme C-terminal domain AhyD4_10715 PF00501 AMP-binding enzyme AhyD4_10720 PF01502 Phosphoribosyl-AMP cyclohydrolase AhyD4_10720 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AhyD4_10725 PF00977 Histidine biosynthesis protein AhyD4_10730 PF01627 Hpt domain AhyD4_10730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_10730 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_10730 PF00072 Response regulator receiver domain AhyD4_10740 PF00072 Response regulator receiver domain AhyD4_10745 PF00977 Histidine biosynthesis protein AhyD4_10750 PF00117 Glutamine amidotransferase class-I AhyD4_10755 PF08645 Polynucleotide kinase 3 phosphatase AhyD4_10755 PF00475 Imidazoleglycerol-phosphate dehydratase AhyD4_10760 PF00155 Aminotransferase class I and II AhyD4_10765 PF00815 Histidinol dehydrogenase AhyD4_10770 PF01634 ATP phosphoribosyltransferase AhyD4_10770 PF08029 HisG, C-terminal domain AhyD4_10780 PF04851 Type III restriction enzyme, res subunit AhyD4_10780 PF13307 Helicase C-terminal domain AhyD4_10785 PF00814 Glycoprotease family AhyD4_10795 PF08241 Methyltransferase domain AhyD4_10795 PF12697 Alpha/beta hydrolase family AhyD4_10800 PF13193 AMP-binding enzyme C-terminal domain AhyD4_10800 PF00501 AMP-binding enzyme AhyD4_10805 PF00570 HRDC domain AhyD4_10805 PF01612 3'-5' exonuclease AhyD4_10810 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_10915 PF02796 Helix-turn-helix domain of resolvase AhyD4_10915 PF00239 Resolvase, N terminal domain AhyD4_10925 PF00239 Resolvase, N terminal domain AhyD4_10925 PF07508 Recombinase AhyD4_10925 PF13408 Recombinase zinc beta ribbon domain AhyD4_10935 PF01207 Dihydrouridine synthase (Dus) AhyD4_10940 PF04304 Protein of unknown function (DUF454) AhyD4_10945 PF00156 Phosphoribosyl transferase domain AhyD4_10950 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AhyD4_10950 PF12169 DNA polymerase III subunits gamma and tau domain III AhyD4_10950 PF12170 DNA polymerase III tau subunit V interacting with alpha AhyD4_10955 PF02575 YbaB/EbfC DNA-binding family AhyD4_10960 PF00589 Phage integrase family AhyD4_10960 PF12167 Arm DNA-binding domain AhyD4_10990 PF06630 Enterobacterial exodeoxyribonuclease VIII AhyD4_10990 PF12684 PDDEXK-like domain of unknown function (DUF3799) AhyD4_11090 PF06628 Catalase-related immune-responsive AhyD4_11090 PF00199 Catalase AhyD4_11100 PF00080 Copper/zinc superoxide dismutase (SODC) AhyD4_11115 PF09669 Phage regulatory protein Rha (Phage_pRha) AhyD4_11115 PF03374 Phage antirepressor protein KilAC domain AhyD4_11120 PF05772 NinB protein AhyD4_11135 PF01338 Bacillus thuringiensis toxin AhyD4_11140 PF11799 impB/mucB/samB family C-terminal domain AhyD4_11140 PF00817 impB/mucB/samB family AhyD4_11140 PF11798 IMS family HHH motif AhyD4_11140 PF13438 Domain of unknown function (DUF4113) AhyD4_11145 PF00717 Peptidase S24-like AhyD4_11160 PF00816 H-NS histone family AhyD4_11310 PF00072 Response regulator receiver domain AhyD4_11310 PF00196 Bacterial regulatory proteins, luxR family AhyD4_11320 PF00270 DEAD/DEAH box helicase AhyD4_11320 PF11898 Domain of unknown function (DUF3418) AhyD4_11320 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AhyD4_11320 PF04408 Helicase associated domain (HA2) AhyD4_11320 PF00271 Helicase conserved C-terminal domain AhyD4_11330 PF01386 Ribosomal L25p family AhyD4_11335 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_11335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_11335 PF00672 HAMP domain AhyD4_11335 PF00072 Response regulator receiver domain AhyD4_11335 PF01627 Hpt domain AhyD4_11335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AhyD4_11340 PF00072 Response regulator receiver domain AhyD4_11345 PF00753 Metallo-beta-lactamase superfamily AhyD4_11355 PF00586 AIR synthase related protein, N-terminal domain AhyD4_11355 PF02769 AIR synthase related protein, C-terminal domain AhyD4_11375 PF10672 S-adenosylmethionine-dependent methyltransferase AhyD4_11375 PF17785 PUA-like domain AhyD4_11380 PF12729 Four helix bundle sensory module for signal transduction AhyD4_11380 PF00672 HAMP domain AhyD4_11380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_11385 PF00708 Acylphosphatase AhyD4_11390 PF02798 Glutathione S-transferase, N-terminal domain AhyD4_11390 PF00043 Glutathione S-transferase, C-terminal domain AhyD4_11395 PF09334 tRNA synthetases class I (M) AhyD4_11395 PF01588 Putative tRNA binding domain AhyD4_11395 PF08264 Anticodon-binding domain of tRNA AhyD4_11400 PF10609 NUBPL iron-transfer P-loop NTPase AhyD4_11405 PF00485 Phosphoribulokinase / Uridine kinase family AhyD4_11410 PF00692 dUTPase AhyD4_11415 PF01384 Phosphate transporter family AhyD4_11420 PF00575 S1 RNA binding domain AhyD4_11420 PF10150 Ribonuclease E/G family AhyD4_11420 PF12111 Polyribonucleotide phosphorylase C terminal AhyD4_11425 PF01479 S4 domain AhyD4_11425 PF00849 RNA pseudouridylate synthase AhyD4_11435 PF02545 Maf-like protein AhyD4_11440 PF07690 Major Facilitator Superfamily AhyD4_11445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_11445 PF03466 LysR substrate binding domain AhyD4_11455 PF02620 Large ribosomal RNA subunit accumulation protein YceD AhyD4_11460 PF01783 Ribosomal L32p protein family AhyD4_11465 PF02504 Fatty acid synthesis protein AhyD4_11470 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AhyD4_11470 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AhyD4_11475 PF00698 Acyl transferase domain AhyD4_11485 PF00550 Phosphopantetheine attachment site AhyD4_11490 PF02801 Beta-ketoacyl synthase, C-terminal domain AhyD4_11490 PF00109 Beta-ketoacyl synthase, N-terminal domain AhyD4_11495 PF01063 Amino-transferase class IV AhyD4_11500 PF02618 YceG-like family AhyD4_11505 PF02223 Thymidylate kinase AhyD4_11510 PF09115 DNA polymerase III, delta subunit, C terminal AhyD4_11515 PF01026 TatD related DNase AhyD4_11520 PF00589 Phage integrase family AhyD4_11530 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AhyD4_11530 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AhyD4_11530 PF01189 16S rRNA methyltransferase RsmB/F AhyD4_11535 PF02470 MlaD protein AhyD4_11540 PF04403 Paraquat-inducible protein A AhyD4_11555 PF00285 Citrate synthase, C-terminal domain AhyD4_11560 PF03972 MmgE/PrpD family AhyD4_11575 PF06974 Protein of unknown function (DUF1298) AhyD4_11575 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AhyD4_11600 PF00106 short chain dehydrogenase AhyD4_11610 PF07130 YebG protein AhyD4_11620 PF05362 Lon protease (S16) C-terminal proteolytic domain AhyD4_11620 PF13654 AAA domain AhyD4_11625 PF07977 FabA-like domain AhyD4_11635 PF12848 ABC transporter AhyD4_11635 PF00005 ABC transporter AhyD4_11635 PF16326 ABC transporter C-terminal domain AhyD4_11645 PF02926 THUMP domain AhyD4_11645 PF01170 Putative RNA methylase family UPF0020 AhyD4_11645 PF10672 S-adenosylmethionine-dependent methyltransferase AhyD4_11650 PF07126 Cell-division protein ZapC AhyD4_11655 PF01180 Dihydroorotate dehydrogenase AhyD4_11660 PF05088 Bacterial NAD-glutamate dehydrogenase AhyD4_11670 PF01433 Peptidase family M1 domain AhyD4_11670 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AhyD4_11670 PF11940 Domain of unknown function (DUF3458) Ig-like fold AhyD4_11675 PF03572 Peptidase family S41 AhyD4_11675 PF00595 PDZ domain AhyD4_11675 PF17804 Tail specific protease N-terminal domain AhyD4_11675 PF11818 C-terminal domain of tail specific protease (DUF3340) AhyD4_11680 PF04352 ProQ/FINO family AhyD4_11680 PF17516 ProQ C-terminal domain AhyD4_11685 PF13185 GAF domain AhyD4_11695 PF00115 Cytochrome C and Quinol oxidase polypeptide I AhyD4_11710 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AhyD4_11710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AhyD4_11720 PF00403 Heavy-metal-associated domain AhyD4_11735 PF13545 Crp-like helix-turn-helix domain AhyD4_11735 PF00027 Cyclic nucleotide-binding domain AhyD4_11740 PF00582 Universal stress protein family AhyD4_11745 PF01171 PP-loop family AhyD4_11760 PF14497 Glutathione S-transferase, C-terminal domain AhyD4_11760 PF02798 Glutathione S-transferase, N-terminal domain AhyD4_11765 PF05025 RbsD / FucU transport protein family AhyD4_11770 PF00005 ABC transporter AhyD4_11775 PF02653 Branched-chain amino acid transport system / permease component AhyD4_11780 PF13407 Periplasmic binding protein domain AhyD4_11785 PF00294 pfkB family carbohydrate kinase AhyD4_11790 PF00356 Bacterial regulatory proteins, lacI family AhyD4_11805 PF02146 Sir2 family AhyD4_11820 PF00072 Response regulator receiver domain AhyD4_11820 PF09456 RcsC Alpha-Beta-Loop (ABL) AhyD4_11820 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_11820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_11825 PF00216 Bacterial DNA-binding protein AhyD4_11830 PF01588 Putative tRNA binding domain AhyD4_11830 PF03483 B3/4 domain AhyD4_11830 PF03484 tRNA synthetase B5 domain AhyD4_11830 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AhyD4_11830 PF03147 Ferredoxin-fold anticodon binding domain AhyD4_11835 PF01409 tRNA synthetases class II core domain (F) AhyD4_11835 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AhyD4_11840 PF00453 Ribosomal protein L20 AhyD4_11845 PF01632 Ribosomal protein L35 AhyD4_11850 PF00707 Translation initiation factor IF-3, C-terminal domain AhyD4_11850 PF05198 Translation initiation factor IF-3, N-terminal domain AhyD4_11855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AhyD4_11855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AhyD4_11855 PF02824 TGS domain AhyD4_11855 PF03129 Anticodon binding domain AhyD4_11865 PF04055 Radical SAM superfamily AhyD4_11870 PF03989 DNA gyrase C-terminal domain, beta-propeller AhyD4_11870 PF00521 DNA gyrase/topoisomerase IV, subunit A AhyD4_11880 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_11885 PF00317 Ribonucleotide reductase, all-alpha domain AhyD4_11885 PF02867 Ribonucleotide reductase, barrel domain AhyD4_11885 PF03477 ATP cone domain AhyD4_11890 PF00268 Ribonucleotide reductase, small chain AhyD4_11895 PF00111 2Fe-2S iron-sulfur cluster binding domain AhyD4_11900 PF03562 MltA specific insert domain AhyD4_11900 PF06725 3D domain AhyD4_11905 PF06945 Protein of unknown function (DUF1289) AhyD4_11915 PF03613 PTS system mannose/fructose/sorbose family IID component AhyD4_11920 PF03609 PTS system sorbose-specific iic component AhyD4_11925 PF03830 PTS system sorbose subfamily IIB component AhyD4_11925 PF03610 PTS system fructose IIA component AhyD4_11940 PF00356 Bacterial regulatory proteins, lacI family AhyD4_11940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AhyD4_11945 PF06560 Glucose-6-phosphate isomerase (GPI) AhyD4_11950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AhyD4_11950 PF02378 Phosphotransferase system, EIIC AhyD4_11955 PF00294 pfkB family carbohydrate kinase AhyD4_11960 PF00381 PTS HPr component phosphorylation site AhyD4_11960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AhyD4_11965 PF00356 Bacterial regulatory proteins, lacI family AhyD4_11965 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AhyD4_11970 PF03222 Tryptophan/tyrosine permease family AhyD4_11990 PF00271 Helicase conserved C-terminal domain AhyD4_11990 PF00270 DEAD/DEAH box helicase AhyD4_12000 PF01264 Chorismate synthase AhyD4_12005 PF05175 Methyltransferase small domain AhyD4_12010 PF01713 Smr domain AhyD4_12020 PF08448 PAS fold AhyD4_12020 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_12025 PF00300 Histidine phosphatase superfamily (branch 1) AhyD4_12050 PF03831 PhnA domain AhyD4_12050 PF08274 PhnA Zinc-Ribbon AhyD4_12065 PF02567 Phenazine biosynthesis-like protein AhyD4_12080 PF01327 Polypeptide deformylase AhyD4_12095 PF05036 Sporulation related domain AhyD4_12095 PF03330 Lytic transglycolase AhyD4_12100 PF16330 MukB hinge domain AhyD4_12100 PF04310 MukB N-terminal AhyD4_12105 PF04288 MukE-like family AhyD4_12110 PF17192 MukF middle domain AhyD4_12110 PF03882 MukF winged-helix domain AhyD4_12110 PF17193 MukF C-terminal domain AhyD4_12120 PF02698 DUF218 domain AhyD4_12125 PF00121 Triosephosphate isomerase AhyD4_12130 PF00365 Phosphofructokinase AhyD4_12135 PF07687 Peptidase dimerisation domain AhyD4_12135 PF01546 Peptidase family M20/M25/M40 AhyD4_12140 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_12145 PF02789 Cytosol aminopeptidase family, N-terminal domain AhyD4_12145 PF00883 Cytosol aminopeptidase family, catalytic domain AhyD4_12185 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AhyD4_12185 PF00128 Alpha amylase, catalytic domain AhyD4_12195 PF11398 Protein of unknown function (DUF2813) AhyD4_12200 PF14525 AraC-binding-like domain AhyD4_12200 PF12833 Helix-turn-helix domain AhyD4_12210 PF03466 LysR substrate binding domain AhyD4_12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_12215 PF01925 Sulfite exporter TauE/SafE AhyD4_12225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AhyD4_12225 PF18029 Glyoxalase-like domain AhyD4_12230 PF07478 D-ala D-ala ligase C-terminus AhyD4_12230 PF01820 D-ala D-ala ligase N-terminus AhyD4_12240 PF00255 Glutathione peroxidase AhyD4_12245 PF00270 DEAD/DEAH box helicase AhyD4_12245 PF00271 Helicase conserved C-terminal domain AhyD4_12250 PF13673 Acetyltransferase (GNAT) domain AhyD4_12260 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AhyD4_12270 PF01928 CYTH domain AhyD4_12280 PF00583 Acetyltransferase (GNAT) family AhyD4_12285 PF00465 Iron-containing alcohol dehydrogenase AhyD4_12290 PF03992 Antibiotic biosynthesis monooxygenase AhyD4_12295 PF08543 Phosphomethylpyrimidine kinase AhyD4_12315 PF00561 alpha/beta hydrolase fold AhyD4_12315 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AhyD4_12320 PF01575 MaoC like domain AhyD4_12335 PF00005 ABC transporter AhyD4_12335 PF00664 ABC transporter transmembrane region AhyD4_12340 PF00005 ABC transporter AhyD4_12340 PF00664 ABC transporter transmembrane region AhyD4_12345 PF00672 HAMP domain AhyD4_12345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_12345 PF00072 Response regulator receiver domain AhyD4_12345 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_12345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AhyD4_12345 PF01627 Hpt domain AhyD4_12350 PF00085 Thioredoxin AhyD4_12360 PF00343 Carbohydrate phosphorylase AhyD4_12380 PF00425 chorismate binding enzyme AhyD4_12380 PF04715 Anthranilate synthase component I, N terminal region AhyD4_12385 PF00293 NUDIX domain AhyD4_12390 PF03222 Tryptophan/tyrosine permease family AhyD4_12395 PF00375 Sodium:dicarboxylate symporter family AhyD4_12400 PF09382 RQC domain AhyD4_12400 PF00270 DEAD/DEAH box helicase AhyD4_12400 PF00271 Helicase conserved C-terminal domain AhyD4_12400 PF16124 RecQ zinc-binding AhyD4_12400 PF00570 HRDC domain AhyD4_12405 PF06798 PrkA serine protein kinase C-terminal domain AhyD4_12405 PF08298 PrkA AAA domain AhyD4_12410 PF04285 Protein of unknown function (DUF444) AhyD4_12415 PF04293 SpoVR like protein AhyD4_12420 PF07840 FadR C-terminal domain AhyD4_12420 PF00392 Bacterial regulatory proteins, gntR family AhyD4_12425 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AhyD4_12430 PF02600 Disulfide bond formation protein DsbB AhyD4_12435 PF09335 SNARE associated Golgi protein AhyD4_12445 PF17757 UvrB interaction domain AhyD4_12445 PF12344 Ultra-violet resistance protein B AhyD4_12445 PF00271 Helicase conserved C-terminal domain AhyD4_12445 PF02151 UvrB/uvrC motif AhyD4_12445 PF04851 Type III restriction enzyme, res subunit AhyD4_12455 PF06826 Predicted Permease Membrane Region AhyD4_12455 PF02080 TrkA-C domain AhyD4_12460 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_12460 PF01464 Transglycosylase SLT domain AhyD4_12475 PF01970 Tripartite tricarboxylate transporter TctA family AhyD4_12480 PF00072 Response regulator receiver domain AhyD4_12480 PF12431 Transcriptional regulator AhyD4_12480 PF08279 HTH domain AhyD4_12485 PF17203 Single cache domain 3 AhyD4_12485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_12485 PF00989 PAS fold AhyD4_12485 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AhyD4_12490 PF01047 MarR family AhyD4_12490 PF00480 ROK family AhyD4_12495 PF17200 Single Cache domain 2 AhyD4_12495 PF00672 HAMP domain AhyD4_12495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_12500 PF02810 SEC-C motif AhyD4_12505 PF04324 BFD-like [2Fe-2S] binding domain AhyD4_12505 PF01266 FAD dependent oxidoreductase AhyD4_12510 PF00890 FAD binding domain AhyD4_12515 PF02754 Cysteine-rich domain AhyD4_12515 PF13183 4Fe-4S dicluster domain AhyD4_12530 PF02335 Cytochrome c552 AhyD4_12535 PF13435 Cytochrome c554 and c-prime AhyD4_12535 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AhyD4_12540 PF13247 4Fe-4S dicluster domain AhyD4_12540 PF00037 4Fe-4S binding domain AhyD4_12545 PF03916 Polysulphide reductase, NrfD AhyD4_12550 PF01578 Cytochrome C assembly protein AhyD4_12550 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AhyD4_12555 PF08534 Redoxin AhyD4_12560 PF03918 Cytochrome C biogenesis protein AhyD4_12565 PF00293 NUDIX domain AhyD4_12570 PF00768 D-alanyl-D-alanine carboxypeptidase AhyD4_12575 PF01212 Beta-eliminating lyase AhyD4_12580 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AhyD4_12585 PF01266 FAD dependent oxidoreductase AhyD4_12595 PF07969 Amidohydrolase family AhyD4_12600 PF00478 IMP dehydrogenase / GMP reductase domain AhyD4_12600 PF00571 CBS domain AhyD4_12610 PF01717 Cobalamin-independent synthase, Catalytic domain AhyD4_12610 PF08267 Cobalamin-independent synthase, N-terminal domain AhyD4_12615 PF03466 LysR substrate binding domain AhyD4_12615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_12625 PF07715 TonB-dependent Receptor Plug Domain AhyD4_12625 PF00593 TonB dependent receptor AhyD4_12630 PF12833 Helix-turn-helix domain AhyD4_12635 PF00106 short chain dehydrogenase AhyD4_12640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_12640 PF03466 LysR substrate binding domain AhyD4_12645 PF13460 NAD(P)H-binding AhyD4_12655 PF01053 Cys/Met metabolism PLP-dependent enzyme AhyD4_12660 PF00675 Insulinase (Peptidase family M16) AhyD4_12660 PF05193 Peptidase M16 inactive domain AhyD4_12665 PF02774 Semialdehyde dehydrogenase, dimerisation domain AhyD4_12665 PF01118 Semialdehyde dehydrogenase, NAD binding domain AhyD4_12670 PF00893 Small Multidrug Resistance protein AhyD4_12675 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AhyD4_12675 PF18381 YcaO cyclodehydratase C-terminal domain AhyD4_12680 PF01226 Formate/nitrite transporter AhyD4_12685 PF01228 Glycine radical AhyD4_12685 PF02901 Pyruvate formate lyase-like AhyD4_12695 PF00202 Aminotransferase class-III AhyD4_12700 PF00266 Aminotransferase class-V AhyD4_12705 PF00392 Bacterial regulatory proteins, gntR family AhyD4_12705 PF07702 UTRA domain AhyD4_12715 PF00005 ABC transporter AhyD4_12720 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_12725 PF01266 FAD dependent oxidoreductase AhyD4_12730 PF03692 Putative zinc- or iron-chelating domain AhyD4_12740 PF00549 CoA-ligase AhyD4_12740 PF02629 CoA binding domain AhyD4_12745 PF00549 CoA-ligase AhyD4_12745 PF08442 ATP-grasp domain AhyD4_12750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AhyD4_12750 PF00364 Biotin-requiring enzyme AhyD4_12750 PF02817 e3 binding domain AhyD4_12755 PF00676 Dehydrogenase E1 component AhyD4_12755 PF16078 2-oxoglutarate dehydrogenase N-terminus AhyD4_12755 PF02779 Transketolase, pyrimidine binding domain AhyD4_12755 PF16870 2-oxoglutarate dehydrogenase C-terminal AhyD4_12760 PF13085 2Fe-2S iron-sulfur cluster binding domain AhyD4_12765 PF00890 FAD binding domain AhyD4_12765 PF02910 Fumarate reductase flavoprotein C-term AhyD4_12770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AhyD4_12775 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AhyD4_12780 PF00285 Citrate synthase, C-terminal domain AhyD4_12795 PF00109 Beta-ketoacyl synthase, N-terminal domain AhyD4_12795 PF02801 Beta-ketoacyl synthase, C-terminal domain AhyD4_12800 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AhyD4_12800 PF01266 FAD dependent oxidoreductase AhyD4_12810 PF03606 C4-dicarboxylate anaerobic carrier AhyD4_12825 PF01863 Protein of unknown function DUF45 AhyD4_12840 PF01197 Ribosomal protein L31 AhyD4_12845 PF00444 Ribosomal protein L36 AhyD4_12850 PF05726 Pirin C-terminal cupin domain AhyD4_12850 PF02678 Pirin AhyD4_12855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_12855 PF03466 LysR substrate binding domain AhyD4_12860 PF02311 AraC-like ligand binding domain AhyD4_12860 PF12833 Helix-turn-helix domain AhyD4_12865 PF02653 Branched-chain amino acid transport system / permease component AhyD4_12870 PF00005 ABC transporter AhyD4_12875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AhyD4_12880 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AhyD4_12885 PF00596 Class II Aldolase and Adducin N-terminal domain AhyD4_12890 PF02610 L-arabinose isomerase AhyD4_12890 PF11762 L-arabinose isomerase C-terminal domain AhyD4_12895 PF00929 Exonuclease AhyD4_12895 PF08411 Exonuclease C-terminal AhyD4_12910 PF03788 LrgA family AhyD4_12915 PF04172 LrgB-like family AhyD4_12920 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AhyD4_12920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AhyD4_12925 PF00501 AMP-binding enzyme AhyD4_12930 PF08891 YfcL protein AhyD4_12940 PF03741 Integral membrane protein TerC family AhyD4_12945 PF00691 OmpA family AhyD4_12950 PF17152 Periplasmic sensor domain AhyD4_12950 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_12955 PF13689 YfiR/HmsC-like AhyD4_12960 PF18024 Helix-turn-helix domain AhyD4_12960 PF00158 Sigma-54 interaction domain AhyD4_12965 PF01329 Pterin 4 alpha carbinolamine dehydratase AhyD4_12970 PF01329 Pterin 4 alpha carbinolamine dehydratase AhyD4_12975 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AhyD4_12980 PF05128 Domain of unknown function (DUF697) AhyD4_12985 PF04317 YcjX-like family, DUF463 AhyD4_12995 PF06667 Phage shock protein B AhyD4_13000 PF04012 PspA/IM30 family AhyD4_13005 PF00158 Sigma-54 interaction domain AhyD4_13005 PF02954 Bacterial regulatory protein, Fis family AhyD4_13010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_13015 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_13020 PF12911 N-terminal TM domain of oligopeptide transport permease C AhyD4_13020 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_13025 PF00005 ABC transporter AhyD4_13025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_13030 PF00005 ABC transporter AhyD4_13035 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AhyD4_13040 PF00156 Phosphoribosyl transferase domain AhyD4_13045 PF02674 Colicin V production protein AhyD4_13050 PF02403 Seryl-tRNA synthetase N-terminal domain AhyD4_13050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AhyD4_13060 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_13060 PF12002 MgsA AAA+ ATPase C terminal AhyD4_13060 PF16193 AAA C-terminal domain AhyD4_13065 PF03548 Outer membrane lipoprotein carrier protein LolA AhyD4_13070 PF01580 FtsK/SpoIIIE family AhyD4_13070 PF09397 Ftsk gamma domain AhyD4_13070 PF17854 FtsK alpha domain AhyD4_13070 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AhyD4_13075 PF01037 Lrp/AsnC ligand binding domain AhyD4_13080 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_13085 PF17158 Membrane-associated sensor, integral membrane domain AhyD4_13085 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_13090 PF05433 Glycine zipper 2TM domain AhyD4_13095 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AhyD4_13100 PF04376 Arginine-tRNA-protein transferase, N terminus AhyD4_13100 PF04377 Arginine-tRNA-protein transferase, C terminus AhyD4_13105 PF01176 Translation initiation factor 1A / IF-1 AhyD4_13110 PF02861 Clp amino terminal domain, pathogenicity island component AhyD4_13110 PF17871 AAA lid domain AhyD4_13110 PF10431 C-terminal, D2-small domain, of ClpB protein AhyD4_13110 PF07724 AAA domain (Cdc48 subfamily) AhyD4_13110 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_13115 PF02617 ATP-dependent Clp protease adaptor protein ClpS AhyD4_13120 PF00313 'Cold-shock' DNA-binding domain AhyD4_13125 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AhyD4_13125 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AhyD4_13155 PF00182 Chitinase class I AhyD4_13165 PF04717 Type VI secretion system, phage-baseplate injector AhyD4_13195 PF02954 Bacterial regulatory protein, Fis family AhyD4_13195 PF00158 Sigma-54 interaction domain AhyD4_13195 PF02830 V4R domain AhyD4_13195 PF06505 Activator of aromatic catabolism AhyD4_13200 PF07724 AAA domain (Cdc48 subfamily) AhyD4_13200 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_13200 PF10431 C-terminal, D2-small domain, of ClpB protein AhyD4_13200 PF17871 AAA lid domain AhyD4_13270 PF04717 Type VI secretion system, phage-baseplate injector AhyD4_13275 PF05638 Type VI secretion system effector, Hcp AhyD4_13290 PF10722 Putative bacterial sensory transduction regulator AhyD4_13300 PF00265 Thymidine kinase AhyD4_13305 PF03553 Na+/H+ antiporter family AhyD4_13310 PF00816 H-NS histone family AhyD4_13315 PF01923 Cobalamin adenosyltransferase AhyD4_13320 PF12843 Putative quorum-sensing-regulated virulence factor AhyD4_13325 PF04055 Radical SAM superfamily AhyD4_13330 PF06508 Queuosine biosynthesis protein QueC AhyD4_13345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AhyD4_13350 PF18073 Rubredoxin metal binding domain AhyD4_13360 PF00216 Bacterial DNA-binding protein AhyD4_13365 PF00575 S1 RNA binding domain AhyD4_13370 PF02224 Cytidylate kinase AhyD4_13375 PF00925 GTP cyclohydrolase II AhyD4_13380 PF03466 LysR substrate binding domain AhyD4_13380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_13385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_13385 PF03466 LysR substrate binding domain AhyD4_13390 PF07690 Major Facilitator Superfamily AhyD4_13405 PF00881 Nitroreductase family AhyD4_13410 PF03707 Bacterial signalling protein N terminal repeat AhyD4_13410 PF13188 PAS domain AhyD4_13410 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_13410 PF00563 EAL domain AhyD4_13420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_13420 PF03466 LysR substrate binding domain AhyD4_13425 PF00072 Response regulator receiver domain AhyD4_13435 PF01212 Beta-eliminating lyase AhyD4_13450 PF00248 Aldo/keto reductase family AhyD4_13455 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AhyD4_13465 PF03411 Penicillin-insensitive murein endopeptidase AhyD4_13475 PF04536 TPM domain AhyD4_13490 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_13495 PF00691 OmpA family AhyD4_13495 PF13677 Membrane MotB of proton-channel complex MotA/MotB AhyD4_13500 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AhyD4_13505 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AhyD4_13510 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AhyD4_13510 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AhyD4_13520 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AhyD4_13520 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AhyD4_13525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_13525 PF00384 Molybdopterin oxidoreductase AhyD4_13525 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AhyD4_13530 PF00146 NADH dehydrogenase AhyD4_13535 PF12838 4Fe-4S dicluster domain AhyD4_13540 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AhyD4_13545 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AhyD4_13550 PF00361 Proton-conducting membrane transporter AhyD4_13550 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AhyD4_13555 PF00361 Proton-conducting membrane transporter AhyD4_13560 PF00361 Proton-conducting membrane transporter AhyD4_13570 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AhyD4_13570 PF02769 AIR synthase related protein, C-terminal domain AhyD4_13570 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AhyD4_13575 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_13575 PF01464 Transglycosylase SLT domain AhyD4_13580 PF07191 zinc-ribbons AhyD4_13585 PF01926 50S ribosome-binding GTPase AhyD4_13585 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AhyD4_13590 PF13360 PQQ-like domain AhyD4_13595 PF09976 Tetratricopeptide repeat-like domain AhyD4_13600 PF03129 Anticodon binding domain AhyD4_13600 PF13393 Histidyl-tRNA synthetase AhyD4_13605 PF04551 GcpE protein AhyD4_13610 PF13464 Domain of unknown function (DUF4115) AhyD4_13620 PF04055 Radical SAM superfamily AhyD4_13625 PF00334 Nucleoside diphosphate kinase AhyD4_13630 PF12404 Peptidase AhyD4_13630 PF00883 Cytosol aminopeptidase family, catalytic domain AhyD4_13635 PF12404 Peptidase AhyD4_13635 PF00883 Cytosol aminopeptidase family, catalytic domain AhyD4_13640 PF00111 2Fe-2S iron-sulfur cluster binding domain AhyD4_13645 PF00012 Hsp70 protein AhyD4_13650 PF07743 HSCB C-terminal oligomerisation domain AhyD4_13655 PF01521 Iron-sulphur cluster biosynthesis AhyD4_13660 PF01592 NifU-like N terminal domain AhyD4_13665 PF00266 Aminotransferase class-V AhyD4_13670 PF02082 Transcriptional regulator AhyD4_13675 PF00588 SpoU rRNA Methylase family AhyD4_13700 PF07719 Tetratricopeptide repeat AhyD4_13700 PF13181 Tetratricopeptide repeat AhyD4_13710 PF07549 SecD/SecF GG Motif AhyD4_13710 PF02355 Protein export membrane protein AhyD4_13715 PF13721 SecD export protein N-terminal TM region AhyD4_13715 PF07549 SecD/SecF GG Motif AhyD4_13715 PF02355 Protein export membrane protein AhyD4_13720 PF02699 Preprotein translocase subunit AhyD4_13725 PF01702 Queuine tRNA-ribosyltransferase AhyD4_13730 PF02547 Queuosine biosynthesis protein AhyD4_13735 PF00571 CBS domain AhyD4_13740 PF00578 AhpC/TSA family AhyD4_13740 PF10417 C-terminal domain of 1-Cys peroxiredoxin AhyD4_13745 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_13745 PF13192 Thioredoxin domain AhyD4_13750 PF07690 Major Facilitator Superfamily AhyD4_13760 PF08241 Methyltransferase domain AhyD4_13765 PF03960 ArsC family AhyD4_13770 PF01758 Sodium Bile acid symporter family AhyD4_13775 PF01022 Bacterial regulatory protein, arsR family AhyD4_13780 PF02347 Glycine cleavage system P-protein AhyD4_13785 PF01597 Glycine cleavage H-protein AhyD4_13790 PF08669 Glycine cleavage T-protein C-terminal barrel domain AhyD4_13790 PF01571 Aminomethyltransferase folate-binding domain AhyD4_13795 PF01494 FAD binding domain AhyD4_13800 PF01494 FAD binding domain AhyD4_13805 PF03695 Uncharacterised protein family (UPF0149) AhyD4_13810 PF05164 Cell division protein ZapA AhyD4_13820 PF07690 Major Facilitator Superfamily AhyD4_13825 PF00043 Glutathione S-transferase, C-terminal domain AhyD4_13825 PF02798 Glutathione S-transferase, N-terminal domain AhyD4_13835 PF00459 Inositol monophosphatase family AhyD4_13840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_13840 PF00672 HAMP domain AhyD4_13845 PF02535 ZIP Zinc transporter AhyD4_13855 PF01048 Phosphorylase superfamily AhyD4_13865 PF01497 Periplasmic binding protein AhyD4_13870 PF02719 Polysaccharide biosynthesis protein AhyD4_13875 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AhyD4_13890 PF00202 Aminotransferase class-III AhyD4_13905 PF03102 NeuB family AhyD4_13905 PF08666 SAF domain AhyD4_13925 PF02561 Flagellar protein FliS AhyD4_13930 PF02465 Flagellar hook-associated protein 2 N-terminus AhyD4_13930 PF07196 Flagellin hook IN motif AhyD4_13930 PF07195 Flagellar hook-associated protein 2 C-terminus AhyD4_13940 PF07196 Flagellin hook IN motif AhyD4_13940 PF00700 Bacterial flagellin C-terminal helical region AhyD4_13940 PF00669 Bacterial flagellin N-terminal helical region AhyD4_13945 PF01527 Transposase AhyD4_13955 PF00669 Bacterial flagellin N-terminal helical region AhyD4_13955 PF00700 Bacterial flagellin C-terminal helical region AhyD4_13955 PF07196 Flagellin hook IN motif AhyD4_13960 PF07196 Flagellin hook IN motif AhyD4_13960 PF00669 Bacterial flagellin N-terminal helical region AhyD4_13960 PF00700 Bacterial flagellin C-terminal helical region AhyD4_13965 PF03458 UPF0126 domain AhyD4_13975 PF02568 Thiamine biosynthesis protein (ThiI) AhyD4_13975 PF02926 THUMP domain AhyD4_13985 PF06832 Penicillin-Binding Protein C-terminus Family AhyD4_13985 PF00912 Transglycosylase AhyD4_13985 PF00905 Penicillin binding protein transpeptidase domain AhyD4_13990 PF07703 Alpha-2-macroglobulin bait region domain AhyD4_13990 PF07678 A-macroglobulin TED domain AhyD4_13990 PF01835 MG2 domain AhyD4_13990 PF17962 Bacterial macroglobulin domain 6 AhyD4_13990 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AhyD4_13990 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AhyD4_13990 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AhyD4_13990 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AhyD4_13990 PF00207 Alpha-2-macroglobulin family AhyD4_13995 PF01546 Peptidase family M20/M25/M40 AhyD4_13995 PF07687 Peptidase dimerisation domain AhyD4_14000 PF01594 AI-2E family transporter AhyD4_14005 PF02321 Outer membrane efflux protein AhyD4_14010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_14010 PF00529 HlyD membrane-fusion protein of T1SS AhyD4_14025 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_14025 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AhyD4_14030 PF00563 EAL domain AhyD4_14030 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_14030 PF03707 Bacterial signalling protein N terminal repeat AhyD4_14035 PF04055 Radical SAM superfamily AhyD4_14045 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_14050 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_14055 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_14060 PF00005 ABC transporter AhyD4_14065 PF03956 Lysine exporter LysO AhyD4_14070 PF01979 Amidohydrolase family AhyD4_14075 PF04336 Acyl carrier protein phosphodiesterase AhyD4_14090 PF03960 ArsC family AhyD4_14095 PF00578 AhpC/TSA family AhyD4_14100 PF13181 Tetratricopeptide repeat AhyD4_14100 PF01435 Peptidase family M48 AhyD4_14105 PF01206 Sulfurtransferase TusA AhyD4_14110 PF01594 AI-2E family transporter AhyD4_14120 PF00561 alpha/beta hydrolase fold AhyD4_14125 PF03976 Polyphosphate kinase 2 (PPK2) AhyD4_14130 PF00005 ABC transporter AhyD4_14130 PF08402 TOBE domain AhyD4_14135 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_14140 PF14785 Maltose transport system permease protein MalF P2 domain AhyD4_14140 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_14145 PF01547 Bacterial extracellular solute-binding protein AhyD4_14150 PF04245 37-kD nucleoid-associated bacterial protein AhyD4_14155 PF07208 Protein of unknown function (DUF1414) AhyD4_14160 PF11893 Domain of unknown function (DUF3413) AhyD4_14160 PF00884 Sulfatase AhyD4_14165 PF00593 TonB dependent receptor AhyD4_14165 PF07715 TonB-dependent Receptor Plug Domain AhyD4_14170 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AhyD4_14170 PF00326 Prolyl oligopeptidase family AhyD4_14190 PF03974 Ecotin AhyD4_14195 PF04219 Protein of unknown function, DUF AhyD4_14200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_14200 PF03466 LysR substrate binding domain AhyD4_14205 PF02153 Prephenate dehydrogenase AhyD4_14205 PF01817 Chorismate mutase type II AhyD4_14210 PF00793 DAHP synthetase I family AhyD4_14215 PF03009 Glycerophosphoryl diester phosphodiesterase family AhyD4_14220 PF01266 FAD dependent oxidoreductase AhyD4_14220 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AhyD4_14225 PF08220 DeoR-like helix-turn-helix domain AhyD4_14225 PF00455 DeoR C terminal sensor domain AhyD4_14230 PF07690 Major Facilitator Superfamily AhyD4_14235 PF00230 Major intrinsic protein AhyD4_14240 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AhyD4_14240 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AhyD4_14245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_14245 PF03466 LysR substrate binding domain AhyD4_14265 PF00248 Aldo/keto reductase family AhyD4_14270 PF07690 Major Facilitator Superfamily AhyD4_14280 PF02322 Cytochrome bd terminal oxidase subunit II AhyD4_14285 PF01654 Cytochrome bd terminal oxidase subunit I AhyD4_14290 PF00392 Bacterial regulatory proteins, gntR family AhyD4_14290 PF00155 Aminotransferase class I and II AhyD4_14300 PF04391 Protein of unknown function (DUF533) AhyD4_14320 PF07690 Major Facilitator Superfamily AhyD4_14325 PF03466 LysR substrate binding domain AhyD4_14325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_14335 PF07690 Major Facilitator Superfamily AhyD4_14340 PF01479 S4 domain AhyD4_14340 PF00849 RNA pseudouridylate synthase AhyD4_14345 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AhyD4_14345 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AhyD4_14365 PF04851 Type III restriction enzyme, res subunit AhyD4_14365 PF00271 Helicase conserved C-terminal domain AhyD4_14370 PF00300 Histidine phosphatase superfamily (branch 1) AhyD4_14375 PF08348 YheO-like PAS domain AhyD4_14375 PF13309 HTH domain AhyD4_14380 PF03313 Serine dehydratase alpha chain AhyD4_14385 PF01042 Endoribonuclease L-PSP AhyD4_14395 PF00672 HAMP domain AhyD4_14395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_14410 PF17944 Arginine decarboxylase C-terminal helical extension AhyD4_14410 PF17810 Arginine decarboxylase helical bundle domain AhyD4_14410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AhyD4_14415 PF07687 Peptidase dimerisation domain AhyD4_14415 PF01546 Peptidase family M20/M25/M40 AhyD4_14440 PF04264 YceI-like domain AhyD4_14445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_14445 PF03466 LysR substrate binding domain AhyD4_14455 PF01268 Formate--tetrahydrofolate ligase AhyD4_14460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_14460 PF00672 HAMP domain AhyD4_14460 PF17200 Single Cache domain 2 AhyD4_14465 PF01227 GTP cyclohydrolase I AhyD4_14470 PF03454 MoeA C-terminal region (domain IV) AhyD4_14470 PF03453 MoeA N-terminal region (domain I and II) AhyD4_14470 PF00994 Probable molybdopterin binding domain AhyD4_14475 PF00899 ThiF family AhyD4_14480 PF00561 alpha/beta hydrolase fold AhyD4_14485 PF00005 ABC transporter AhyD4_14485 PF03459 TOBE domain AhyD4_14490 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_14500 PF02391 MoaE protein AhyD4_14505 PF02597 ThiS family AhyD4_14510 PF01967 MoaC family AhyD4_14515 PF00994 Probable molybdopterin binding domain AhyD4_14520 PF03264 NapC/NirT cytochrome c family, N-terminal region AhyD4_14525 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AhyD4_14530 PF12801 4Fe-4S binding domain AhyD4_14530 PF13237 4Fe-4S dicluster domain AhyD4_14535 PF12838 4Fe-4S dicluster domain AhyD4_14535 PF12800 4Fe-4S binding domain AhyD4_14540 PF10518 TAT (twin-arginine translocation) pathway signal sequence AhyD4_14540 PF01568 Molydopterin dinucleotide binding domain AhyD4_14540 PF00384 Molybdopterin oxidoreductase AhyD4_14540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_14550 PF13187 4Fe-4S dicluster domain AhyD4_14550 PF12800 4Fe-4S binding domain AhyD4_14550 PF00037 4Fe-4S binding domain AhyD4_14555 PF06463 Molybdenum Cofactor Synthesis C AhyD4_14555 PF04055 Radical SAM superfamily AhyD4_14560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_14560 PF00672 HAMP domain AhyD4_14560 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AhyD4_14560 PF07730 Histidine kinase AhyD4_14565 PF00196 Bacterial regulatory proteins, luxR family AhyD4_14565 PF00072 Response regulator receiver domain AhyD4_14575 PF00672 HAMP domain AhyD4_14575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_14575 PF17149 Periplasmic sensor domain found in signal transduction proteins AhyD4_14575 PF01627 Hpt domain AhyD4_14575 PF00072 Response regulator receiver domain AhyD4_14575 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_14585 PF01933 Uncharacterised protein family UPF0052 AhyD4_14595 PF13230 Glutamine amidotransferases class-II AhyD4_14600 PF13580 SIS domain AhyD4_14605 PF02770 Acyl-CoA dehydrogenase, middle domain AhyD4_14605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AhyD4_14605 PF09317 Domain of unknown function (DUF1974) AhyD4_14605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AhyD4_14610 PF11849 Domain of unknown function (DUF3369) AhyD4_14620 PF00929 Exonuclease AhyD4_14625 PF00075 RNase H AhyD4_14630 PF08241 Methyltransferase domain AhyD4_14635 PF16123 Hydroxyacylglutathione hydrolase C-terminus AhyD4_14635 PF00753 Metallo-beta-lactamase superfamily AhyD4_14640 PF01476 LysM domain AhyD4_14640 PF01464 Transglycosylase SLT domain AhyD4_14645 PF03372 Endonuclease/Exonuclease/phosphatase family AhyD4_14655 PF03061 Thioesterase superfamily AhyD4_14665 PF00356 Bacterial regulatory proteins, lacI family AhyD4_14670 PF01464 Transglycosylase SLT domain AhyD4_14670 PF14718 Soluble lytic murein transglycosylase L domain AhyD4_14675 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_14675 PF00563 EAL domain AhyD4_14675 PF03707 Bacterial signalling protein N terminal repeat AhyD4_14680 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AhyD4_14700 PF04357 TamB, inner membrane protein subunit of TAM complex AhyD4_14705 PF07244 Surface antigen variable number repeat AhyD4_14705 PF01103 Surface antigen AhyD4_14705 PF17243 POTRA domain TamA domain 1 AhyD4_14720 PF01625 Peptide methionine sulfoxide reductase AhyD4_14730 PF02627 Carboxymuconolactone decarboxylase family AhyD4_14735 PF00403 Heavy-metal-associated domain AhyD4_14735 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_14735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AhyD4_14740 PF13416 Bacterial extracellular solute-binding protein AhyD4_14750 PF00005 ABC transporter AhyD4_14755 PF01066 CDP-alcohol phosphatidyltransferase AhyD4_14760 PF13406 Transglycosylase SLT domain AhyD4_14765 PF01047 MarR family AhyD4_14775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AhyD4_14775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AhyD4_14775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AhyD4_14775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AhyD4_14780 PF03925 SeqA protein C-terminal domain AhyD4_14780 PF17206 SeqA protein N-terminal domain AhyD4_14785 PF12697 Alpha/beta hydrolase family AhyD4_14795 PF01402 Ribbon-helix-helix protein, copG family AhyD4_14800 PF00258 Flavodoxin AhyD4_14810 PF01475 Ferric uptake regulator family AhyD4_14815 PF00749 tRNA synthetases class I (E and Q), catalytic domain AhyD4_14815 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AhyD4_14820 PF03173 Putative carbohydrate binding domain AhyD4_14820 PF00728 Glycosyl hydrolase family 20, catalytic domain AhyD4_14820 PF02838 Glycosyl hydrolase family 20, domain 2 AhyD4_14820 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AhyD4_14825 PF02378 Phosphotransferase system, EIIC AhyD4_14825 PF00367 phosphotransferase system, EIIB AhyD4_14825 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AhyD4_14830 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AhyD4_14835 PF01979 Amidohydrolase family AhyD4_14840 PF00480 ROK family AhyD4_14840 PF01047 MarR family AhyD4_14845 PF08019 Phosphoethanolamine transferase EptA/EptB AhyD4_14845 PF00884 Sulfatase AhyD4_14850 PF01709 Transcriptional regulator AhyD4_14855 PF01336 OB-fold nucleic acid binding domain AhyD4_14855 PF00152 tRNA synthetases class II (D, K and N) AhyD4_14855 PF02938 GAD domain AhyD4_14860 PF01904 Protein of unknown function DUF72 AhyD4_14865 PF13649 Methyltransferase domain AhyD4_14870 PF08003 Protein of unknown function (DUF1698) AhyD4_14890 PF00578 AhpC/TSA family AhyD4_14890 PF10417 C-terminal domain of 1-Cys peroxiredoxin AhyD4_14895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_14895 PF03466 LysR substrate binding domain AhyD4_14900 PF12563 Hemolytic toxin N terminal AhyD4_14900 PF07968 Leukocidin/Hemolysin toxin family AhyD4_14905 PF00877 NlpC/P60 family AhyD4_14915 PF00171 Aldehyde dehydrogenase family AhyD4_14920 PF00440 Bacterial regulatory proteins, tetR family AhyD4_14920 PF08359 YsiA-like protein, C-terminal region AhyD4_14930 PF00465 Iron-containing alcohol dehydrogenase AhyD4_14940 PF00291 Pyridoxal-phosphate dependent enzyme AhyD4_14960 PF01554 MatE AhyD4_14980 PF01804 Penicillin amidase AhyD4_14985 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AhyD4_14985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AhyD4_14985 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AhyD4_14985 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AhyD4_14985 PF10371 Domain of unknown function AhyD4_14990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_14990 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AhyD4_14990 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AhyD4_14995 PF00111 2Fe-2S iron-sulfur cluster binding domain AhyD4_14995 PF03473 MOSC domain AhyD4_14995 PF03476 MOSC N-terminal beta barrel domain AhyD4_14995 PF03473 MOSC domain AhyD4_14995 PF00111 2Fe-2S iron-sulfur cluster binding domain AhyD4_14995 PF03476 MOSC N-terminal beta barrel domain AhyD4_15000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_15000 PF13426 PAS domain AhyD4_15000 PF08447 PAS fold AhyD4_15005 PF01435 Peptidase family M48 AhyD4_15015 PF08241 Methyltransferase domain AhyD4_15015 PF12697 Alpha/beta hydrolase family AhyD4_15020 PF00155 Aminotransferase class I and II AhyD4_15025 PF04055 Radical SAM superfamily AhyD4_15025 PF06968 Biotin and Thiamin Synthesis associated domain AhyD4_15045 PF00152 tRNA synthetases class II (D, K and N) AhyD4_15045 PF01336 OB-fold nucleic acid binding domain AhyD4_15050 PF03605 Anaerobic c4-dicarboxylate membrane transporter AhyD4_15060 PF01546 Peptidase family M20/M25/M40 AhyD4_15060 PF07687 Peptidase dimerisation domain AhyD4_15065 PF03606 C4-dicarboxylate anaerobic carrier AhyD4_15075 PF03466 LysR substrate binding domain AhyD4_15075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_15080 PF03960 ArsC family AhyD4_15085 PF07687 Peptidase dimerisation domain AhyD4_15085 PF01546 Peptidase family M20/M25/M40 AhyD4_15090 PF02557 D-alanyl-D-alanine carboxypeptidase AhyD4_15095 PF00999 Sodium/hydrogen exchanger family AhyD4_15095 PF03471 Transporter associated domain AhyD4_15095 PF02080 TrkA-C domain AhyD4_15105 PF03471 Transporter associated domain AhyD4_15105 PF02080 TrkA-C domain AhyD4_15105 PF00999 Sodium/hydrogen exchanger family AhyD4_15115 PF01810 LysE type translocator AhyD4_15120 PF00672 HAMP domain AhyD4_15120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_15125 PF07509 Protein of unknown function (DUF1523) AhyD4_15140 PF01156 Inosine-uridine preferring nucleoside hydrolase AhyD4_15145 PF00849 RNA pseudouridylate synthase AhyD4_15150 PF01048 Phosphorylase superfamily AhyD4_15155 PF00465 Iron-containing alcohol dehydrogenase AhyD4_15190 PF00437 Type II/IV secretion system protein AhyD4_15205 PF04972 BON domain AhyD4_15205 PF13629 Pilus formation protein N terminal region AhyD4_15205 PF00263 Bacterial type II and III secretion system protein AhyD4_15235 PF04355 SmpA / OmlA family AhyD4_15240 PF13460 NAD(P)H-binding AhyD4_15250 PF03364 Polyketide cyclase / dehydrase and lipid transport AhyD4_15255 PF01668 SmpB protein AhyD4_15265 PF04851 Type III restriction enzyme, res subunit AhyD4_15265 PF08463 EcoEI R protein C-terminal AhyD4_15265 PF00271 Helicase conserved C-terminal domain AhyD4_15265 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AhyD4_15345 PF10124 Mu-like prophage major head subunit gpT AhyD4_15350 PF10123 Mu-like prophage I protein AhyD4_15370 PF06074 Protein of unknown function (DUF935) AhyD4_15375 PF03237 Terminase-like family AhyD4_15380 PF11985 Protein of unknown function (DUF3486) AhyD4_15385 PF08461 Ribonuclease R winged-helix domain AhyD4_15420 PF08765 Mor transcription activator family AhyD4_15490 PF00271 Helicase conserved C-terminal domain AhyD4_15490 PF08463 EcoEI R protein C-terminal AhyD4_15490 PF04851 Type III restriction enzyme, res subunit AhyD4_15490 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AhyD4_15495 PF02384 N-6 DNA Methylase AhyD4_15495 PF12161 HsdM N-terminal domain AhyD4_15500 PF01420 Type I restriction modification DNA specificity domain AhyD4_15530 PF03466 LysR substrate binding domain AhyD4_15530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_15535 PF02447 GntP family permease AhyD4_15540 PF00291 Pyridoxal-phosphate dependent enzyme AhyD4_15545 PF00180 Isocitrate/isopropylmalate dehydrogenase AhyD4_15550 PF12833 Helix-turn-helix domain AhyD4_15555 PF01238 Phosphomannose isomerase type I AhyD4_15575 PF00155 Aminotransferase class I and II AhyD4_15580 PF00367 phosphotransferase system, EIIB AhyD4_15580 PF02378 Phosphotransferase system, EIIC AhyD4_15585 PF00356 Bacterial regulatory proteins, lacI family AhyD4_15585 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AhyD4_15600 PF00583 Acetyltransferase (GNAT) family AhyD4_15620 PF02378 Phosphotransferase system, EIIC AhyD4_15620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AhyD4_15620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AhyD4_15625 PF07690 Major Facilitator Superfamily AhyD4_15630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AhyD4_15640 PF00849 RNA pseudouridylate synthase AhyD4_15645 PF00293 NUDIX domain AhyD4_15655 PF04356 Protein of unknown function (DUF489) AhyD4_15660 PF08328 Adenylosuccinate lyase C-terminal AhyD4_15660 PF00206 Lyase AhyD4_15665 PF08007 Cupin superfamily protein AhyD4_15675 PF13508 Acetyltransferase (GNAT) domain AhyD4_15685 PF02798 Glutathione S-transferase, N-terminal domain AhyD4_15690 PF01243 Pyridoxamine 5'-phosphate oxidase AhyD4_15690 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AhyD4_15705 PF01029 NusB family AhyD4_15705 PF01189 16S rRNA methyltransferase RsmB/F AhyD4_15710 PF00462 Glutaredoxin AhyD4_15715 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AhyD4_15715 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AhyD4_15720 PF04333 MlaA lipoprotein AhyD4_15725 PF03918 Cytochrome C biogenesis protein AhyD4_15730 PF03918 Cytochrome C biogenesis protein AhyD4_15735 PF08534 Redoxin AhyD4_15740 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AhyD4_15740 PF01578 Cytochrome C assembly protein AhyD4_15745 PF03100 CcmE AhyD4_15750 PF04995 Heme exporter protein D (CcmD) AhyD4_15755 PF01578 Cytochrome C assembly protein AhyD4_15760 PF03379 CcmB protein AhyD4_15765 PF00005 ABC transporter AhyD4_15775 PF01584 CheW-like domain AhyD4_15785 PF13614 AAA domain AhyD4_15790 PF00691 OmpA family AhyD4_15790 PF13677 Membrane MotB of proton-channel complex MotA/MotB AhyD4_15795 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_15800 PF01339 CheB methylesterase AhyD4_15800 PF00072 Response regulator receiver domain AhyD4_15805 PF01584 CheW-like domain AhyD4_15805 PF07194 P2 response regulator binding domain AhyD4_15805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_15805 PF01627 Hpt domain AhyD4_15805 PF02895 Signal transducing histidine kinase, homodimeric domain AhyD4_15810 PF04344 Chemotaxis phosphatase, CheZ AhyD4_15815 PF00072 Response regulator receiver domain AhyD4_15820 PF04539 Sigma-70 region 3 AhyD4_15820 PF04545 Sigma-70, region 4 AhyD4_15820 PF04542 Sigma-70 region 2 AhyD4_15825 PF10609 NUBPL iron-transfer P-loop NTPase AhyD4_15830 PF00448 SRP54-type protein, GTPase domain AhyD4_15835 PF00771 FHIPEP family AhyD4_15840 PF01312 FlhB HrpN YscU SpaS Family AhyD4_15845 PF01311 Bacterial export proteins, family 1 AhyD4_15850 PF01313 Bacterial export proteins, family 3 AhyD4_15855 PF00813 FliP family AhyD4_15860 PF04347 Flagellar biosynthesis protein, FliO AhyD4_15865 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AhyD4_15870 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AhyD4_15870 PF02154 Flagellar motor switch protein FliM AhyD4_15890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AhyD4_15890 PF18269 T3SS EscN ATPase C-terminal domain AhyD4_15900 PF14842 FliG N-terminal domain AhyD4_15900 PF01706 FliG C-terminal domain AhyD4_15900 PF14841 FliG middle domain AhyD4_15905 PF08345 Flagellar M-ring protein C-terminal AhyD4_15905 PF01514 Secretory protein of YscJ/FliF family AhyD4_15910 PF02049 Flagellar hook-basal body complex protein FliE AhyD4_15920 PF00072 Response regulator receiver domain AhyD4_15925 PF04055 Radical SAM superfamily AhyD4_15925 PF18693 TRAM domain AhyD4_15925 PF00919 Uncharacterized protein family UPF0004 AhyD4_15935 PF12146 Serine aminopeptidase, S33 AhyD4_15935 PF11647 Membrane Localization Domain AhyD4_15935 PF11713 Peptidase C80 family AhyD4_15935 PF07634 RtxA repeat AhyD4_15935 PF16671 Actin cross-linking domain AhyD4_15950 PF00005 ABC transporter AhyD4_15950 PF03412 Peptidase C39 family AhyD4_15950 PF00664 ABC transporter transmembrane region AhyD4_15960 PF00664 ABC transporter transmembrane region AhyD4_15960 PF00005 ABC transporter AhyD4_15960 PF03412 Peptidase C39 family AhyD4_15965 PF00072 Response regulator receiver domain AhyD4_15965 PF00486 Transcriptional regulatory protein, C terminal AhyD4_15975 PF02685 Glucokinase AhyD4_15980 PF01380 SIS domain AhyD4_15980 PF01418 Helix-turn-helix domain, rpiR family AhyD4_15985 PF00224 Pyruvate kinase, barrel domain AhyD4_15985 PF02887 Pyruvate kinase, alpha/beta domain AhyD4_15995 PF00873 AcrB/AcrD/AcrF family AhyD4_16000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AhyD4_16000 PF02770 Acyl-CoA dehydrogenase, middle domain AhyD4_16000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AhyD4_16000 PF09317 Domain of unknown function (DUF1974) AhyD4_16005 PF00440 Bacterial regulatory proteins, tetR family AhyD4_16020 PF00384 Molybdopterin oxidoreductase AhyD4_16025 PF02634 FdhD/NarQ family AhyD4_16030 PF03466 LysR substrate binding domain AhyD4_16030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_16050 PF00936 BMC domain AhyD4_16055 PF00936 BMC domain AhyD4_16060 PF00936 BMC domain AhyD4_16065 PF00171 Aldehyde dehydrogenase family AhyD4_16065 PF00465 Iron-containing alcohol dehydrogenase AhyD4_16075 PF00171 Aldehyde dehydrogenase family AhyD4_16075 PF00465 Iron-containing alcohol dehydrogenase AhyD4_16080 PF02901 Pyruvate formate lyase-like AhyD4_16080 PF01228 Glycine radical AhyD4_16085 PF04055 Radical SAM superfamily AhyD4_16085 PF13187 4Fe-4S dicluster domain AhyD4_16090 PF00936 BMC domain AhyD4_16095 PF06130 Phosphate propanoyltransferase AhyD4_16105 PF00893 Small Multidrug Resistance protein AhyD4_16110 PF00893 Small Multidrug Resistance protein AhyD4_16140 PF04074 YhcH/YjgK/YiaL AhyD4_16145 PF00474 Sodium:solute symporter family AhyD4_16150 PF00480 ROK family AhyD4_16155 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AhyD4_16160 PF01418 Helix-turn-helix domain, rpiR family AhyD4_16160 PF01380 SIS domain AhyD4_16165 PF00701 Dihydrodipicolinate synthetase family AhyD4_16170 PF00141 Peroxidase AhyD4_16175 PF00455 DeoR C terminal sensor domain AhyD4_16175 PF08220 DeoR-like helix-turn-helix domain AhyD4_16180 PF07690 Major Facilitator Superfamily AhyD4_16185 PF07882 L-fucose isomerase, second N-terminal domain AhyD4_16185 PF02952 L-fucose isomerase, C-terminal domain AhyD4_16185 PF07881 L-fucose isomerase, first N-terminal domain AhyD4_16190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AhyD4_16190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AhyD4_16200 PF05025 RbsD / FucU transport protein family AhyD4_16205 PF00465 Iron-containing alcohol dehydrogenase AhyD4_16210 PF00005 ABC transporter AhyD4_16210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AhyD4_16215 PF12911 N-terminal TM domain of oligopeptide transport permease C AhyD4_16215 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_16220 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_16225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_16235 PF17969 L,D-transpeptidase C-terminal domain AhyD4_16235 PF03734 L,D-transpeptidase catalytic domain AhyD4_16235 PF01476 LysM domain AhyD4_16250 PF05971 RNA methyltransferase AhyD4_16255 PF00877 NlpC/P60 family AhyD4_16260 PF01648 4'-phosphopantetheinyl transferase superfamily AhyD4_16265 PF00085 Thioredoxin AhyD4_16275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AhyD4_16280 PF00551 Formyl transferase AhyD4_16280 PF01842 ACT domain AhyD4_16290 PF13091 PLD-like domain AhyD4_16290 PF13396 Phospholipase_D-nuclease N-terminal AhyD4_16305 PF01551 Peptidase family M23 AhyD4_16310 PF00128 Alpha amylase, catalytic domain AhyD4_16315 PF10145 Phage-related minor tail protein AhyD4_16315 PF01551 Peptidase family M23 AhyD4_16315 PF01464 Transglycosylase SLT domain AhyD4_16320 PF00230 Major intrinsic protein AhyD4_16325 PF02075 Crossover junction endodeoxyribonuclease RuvC AhyD4_16335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AhyD4_16355 PF08497 Radical SAM N-terminal AhyD4_16355 PF04055 Radical SAM superfamily AhyD4_16355 PF11842 Domain of unknown function (DUF3362) AhyD4_16365 PF00873 AcrB/AcrD/AcrF family AhyD4_16370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_16370 PF00529 HlyD membrane-fusion protein of T1SS AhyD4_16375 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_16380 PF01734 Patatin-like phospholipase AhyD4_16385 PF00209 Sodium:neurotransmitter symporter family AhyD4_16400 PF01389 OmpA-like transmembrane domain AhyD4_16400 PF00691 OmpA family AhyD4_16405 PF01389 OmpA-like transmembrane domain AhyD4_16405 PF00691 OmpA family AhyD4_16410 PF00691 OmpA family AhyD4_16410 PF01389 OmpA-like transmembrane domain AhyD4_16415 PF03949 Malic enzyme, NAD binding domain AhyD4_16415 PF00390 Malic enzyme, N-terminal domain AhyD4_16420 PF12833 Helix-turn-helix domain AhyD4_16425 PF01554 MatE AhyD4_16430 PF10692 Protein of unknown function (DUF2498) AhyD4_16435 PF00072 Response regulator receiver domain AhyD4_16435 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_16440 PF00860 Permease family AhyD4_16450 PF01235 Sodium:alanine symporter family AhyD4_16455 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AhyD4_16455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AhyD4_16460 PF01699 Sodium/calcium exchanger protein AhyD4_16465 PF08534 Redoxin AhyD4_16475 PF00293 NUDIX domain AhyD4_16495 PF00005 ABC transporter AhyD4_16500 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AhyD4_16500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AhyD4_16505 PF03932 CutC family AhyD4_16510 PF00480 ROK family AhyD4_16520 PF01435 Peptidase family M48 AhyD4_16525 PF12849 PBP superfamily domain AhyD4_16530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_16530 PF11808 Phosphate regulon sensor protein PhoR AhyD4_16530 PF00989 PAS fold AhyD4_16530 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_16535 PF00486 Transcriptional regulatory protein, C terminal AhyD4_16535 PF00072 Response regulator receiver domain AhyD4_16540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AhyD4_16545 PF02515 CoA-transferase family III AhyD4_16550 PF02770 Acyl-CoA dehydrogenase, middle domain AhyD4_16550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AhyD4_16550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AhyD4_16555 PF00158 Sigma-54 interaction domain AhyD4_16555 PF02954 Bacterial regulatory protein, Fis family AhyD4_16555 PF01590 GAF domain AhyD4_16560 PF00171 Aldehyde dehydrogenase family AhyD4_16570 PF00892 EamA-like transporter family AhyD4_16575 PF00072 Response regulator receiver domain AhyD4_16575 PF12431 Transcriptional regulator AhyD4_16580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_16580 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AhyD4_16580 PF17203 Single cache domain 3 AhyD4_16580 PF00989 PAS fold AhyD4_16585 PF00390 Malic enzyme, N-terminal domain AhyD4_16585 PF03949 Malic enzyme, NAD binding domain AhyD4_16590 PF03390 2-hydroxycarboxylate transporter family AhyD4_16595 PF01047 MarR family AhyD4_16600 PF00529 HlyD membrane-fusion protein of T1SS AhyD4_16600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_16630 PF13597 Anaerobic ribonucleoside-triphosphate reductase AhyD4_16630 PF03477 ATP cone domain AhyD4_16640 PF03120 NAD-dependent DNA ligase OB-fold domain AhyD4_16640 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AhyD4_16640 PF01653 NAD-dependent DNA ligase adenylation domain AhyD4_16640 PF00533 BRCA1 C Terminus (BRCT) domain AhyD4_16640 PF12826 Helix-hairpin-helix motif AhyD4_16645 PF04354 ZipA, C-terminal FtsZ-binding domain AhyD4_16650 PF06470 SMC proteins Flexible Hinge Domain AhyD4_16650 PF02463 RecF/RecN/SMC N terminal domain AhyD4_16660 PF03458 UPF0126 domain AhyD4_16670 PF05951 Bacterial protein of unknown function (DUF882) AhyD4_16675 PF01471 Putative peptidoglycan binding domain AhyD4_16675 PF03734 L,D-transpeptidase catalytic domain AhyD4_16690 PF00535 Glycosyl transferase family 2 AhyD4_16705 PF00128 Alpha amylase, catalytic domain AhyD4_16715 PF00072 Response regulator receiver domain AhyD4_16715 PF00196 Bacterial regulatory proteins, luxR family AhyD4_16735 PF02254 TrkA-N domain AhyD4_16735 PF00999 Sodium/hydrogen exchanger family AhyD4_16735 PF02080 TrkA-C domain AhyD4_16740 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_16745 PF01171 PP-loop family AhyD4_16745 PF09179 TilS substrate binding domain AhyD4_16745 PF11734 TilS substrate C-terminal domain AhyD4_16750 PF05649 Peptidase family M13 AhyD4_16750 PF01431 Peptidase family M13 AhyD4_16760 PF12848 ABC transporter AhyD4_16760 PF16326 ABC transporter C-terminal domain AhyD4_16760 PF00005 ABC transporter AhyD4_16765 PF13302 Acetyltransferase (GNAT) domain AhyD4_16770 PF13520 Amino acid permease AhyD4_16775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_16775 PF03466 LysR substrate binding domain AhyD4_16780 PF12706 Beta-lactamase superfamily domain AhyD4_16790 PF03466 LysR substrate binding domain AhyD4_16790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_16800 PF08543 Phosphomethylpyrimidine kinase AhyD4_16805 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AhyD4_16805 PF01276 Orn/Lys/Arg decarboxylase, major domain AhyD4_16805 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AhyD4_16810 PF13520 Amino acid permease AhyD4_16815 PF18500 CadC C-terminal domain 1 AhyD4_16815 PF00486 Transcriptional regulatory protein, C terminal AhyD4_16820 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AhyD4_16825 PF02811 PHP domain AhyD4_16825 PF07733 Bacterial DNA polymerase III alpha NTPase domain AhyD4_16825 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AhyD4_16825 PF14579 Helix-hairpin-helix motif AhyD4_16825 PF01336 OB-fold nucleic acid binding domain AhyD4_16830 PF01351 Ribonuclease HII AhyD4_16835 PF02684 Lipid-A-disaccharide synthetase AhyD4_16840 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AhyD4_16840 PF00132 Bacterial transferase hexapeptide (six repeats) AhyD4_16845 PF07977 FabA-like domain AhyD4_16850 PF00132 Bacterial transferase hexapeptide (six repeats) AhyD4_16850 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AhyD4_16855 PF03938 Outer membrane protein (OmpH-like) AhyD4_16860 PF01103 Surface antigen AhyD4_16860 PF07244 Surface antigen variable number repeat AhyD4_16865 PF02163 Peptidase family M50 AhyD4_16865 PF17820 PDZ domain AhyD4_16870 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AhyD4_16870 PF13288 DXP reductoisomerase C-terminal domain AhyD4_16870 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AhyD4_16880 PF01255 Putative undecaprenyl diphosphate synthase AhyD4_16885 PF01765 Ribosome recycling factor AhyD4_16890 PF00696 Amino acid kinase family AhyD4_16895 PF00889 Elongation factor TS AhyD4_16900 PF00318 Ribosomal protein S2 AhyD4_16905 PF00557 Metallopeptidase family M24 AhyD4_16910 PF01966 HD domain AhyD4_16910 PF01909 Nucleotidyltransferase domain AhyD4_16910 PF08335 GlnD PII-uridylyltransferase AhyD4_16910 PF01842 ACT domain AhyD4_16915 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AhyD4_16915 PF14602 Hexapeptide repeat of succinyl-transferase AhyD4_16915 PF00132 Bacterial transferase hexapeptide (six repeats) AhyD4_16920 PF11944 Protein of unknown function (DUF3461) AhyD4_16925 PF02378 Phosphotransferase system, EIIC AhyD4_16925 PF00367 phosphotransferase system, EIIB AhyD4_16930 PF07148 Maltose operon periplasmic protein precursor (MalM) AhyD4_16935 PF02264 LamB porin AhyD4_16940 PF00258 Flavodoxin AhyD4_16945 PF00849 RNA pseudouridylate synthase AhyD4_16950 PF04287 tRNA pseudouridine synthase C AhyD4_16975 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AhyD4_16980 PF07348 Syd protein (SUKH-2) AhyD4_16985 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AhyD4_16985 PF14489 QueF-like protein AhyD4_16995 PF07694 5TMR of 5TMR-LYT AhyD4_16995 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_17000 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AhyD4_17000 PF03641 Possible lysine decarboxylase AhyD4_17000 PF11892 Domain of unknown function (DUF3412) AhyD4_17005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AhyD4_17005 PF01367 5'-3' exonuclease, C-terminal SAM fold AhyD4_17010 PF00180 Isocitrate/isopropylmalate dehydrogenase AhyD4_17010 PF18324 Hypothetical protein TT1725 AhyD4_17020 PF01728 FtsJ-like methyltransferase AhyD4_17020 PF18125 RlmM ferredoxin-like domain AhyD4_17025 PF04241 Protein of unknown function (DUF423) AhyD4_17035 PF03466 LysR substrate binding domain AhyD4_17035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_17040 PF00672 HAMP domain AhyD4_17040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_17045 PF00817 impB/mucB/samB family AhyD4_17045 PF11799 impB/mucB/samB family C-terminal domain AhyD4_17045 PF11798 IMS family HHH motif AhyD4_17060 PF02424 ApbE family AhyD4_17065 PF00175 Oxidoreductase NAD-binding domain AhyD4_17065 PF00111 2Fe-2S iron-sulfur cluster binding domain AhyD4_17065 PF00970 Oxidoreductase FAD-binding domain AhyD4_17070 PF02508 Rnf-Nqr subunit, membrane protein AhyD4_17075 PF02508 Rnf-Nqr subunit, membrane protein AhyD4_17080 PF04205 FMN-binding domain AhyD4_17085 PF03116 NQR2, RnfD, RnfE family AhyD4_17090 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AhyD4_17090 PF11973 NQRA C-terminal domain AhyD4_17095 PF01722 BolA-like protein AhyD4_17100 PF05175 Methyltransferase small domain AhyD4_17110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AhyD4_17120 PF07690 Major Facilitator Superfamily AhyD4_17125 PF03502 Nucleoside-specific channel-forming protein, Tsx AhyD4_17130 PF04461 Protein of unknown function (DUF520) AhyD4_17135 PF08546 Ketopantoate reductase PanE/ApbA C terminal AhyD4_17135 PF02558 Ketopantoate reductase PanE/ApbA AhyD4_17140 PF01965 DJ-1/PfpI family AhyD4_17145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AhyD4_17145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AhyD4_17145 PF00205 Thiamine pyrophosphate enzyme, central domain AhyD4_17150 PF03306 Alpha-acetolactate decarboxylase AhyD4_17155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_17155 PF03466 LysR substrate binding domain AhyD4_17180 PF05638 Type VI secretion system effector, Hcp AhyD4_17185 PF03472 Autoinducer binding domain AhyD4_17185 PF00196 Bacterial regulatory proteins, luxR family AhyD4_17195 PF06965 Na+/H+ antiporter 1 AhyD4_17195 PF13462 Thioredoxin AhyD4_17200 PF16363 GDP-mannose 4,6 dehydratase AhyD4_17205 PF00970 Oxidoreductase FAD-binding domain AhyD4_17205 PF00042 Globin AhyD4_17205 PF00175 Oxidoreductase NAD-binding domain AhyD4_17210 PF03063 Prismane/CO dehydrogenase family AhyD4_17215 PF00210 Ferritin-like domain AhyD4_17255 PF00106 short chain dehydrogenase AhyD4_17265 PF00875 DNA photolyase AhyD4_17265 PF03441 FAD binding domain of DNA photolyase AhyD4_17270 PF13411 MerR HTH family regulatory protein AhyD4_17275 PF08349 Protein of unknown function (DUF1722) AhyD4_17305 PF01817 Chorismate mutase type II AhyD4_17305 PF00800 Prephenate dehydratase AhyD4_17335 PF09588 YqaJ-like viral recombinase domain AhyD4_17380 PF04002 RadC-like JAB domain AhyD4_17390 PF04055 Radical SAM superfamily AhyD4_17395 PF06508 Queuosine biosynthesis protein QueC AhyD4_17410 PF00570 HRDC domain AhyD4_17410 PF00271 Helicase conserved C-terminal domain AhyD4_17410 PF09382 RQC domain AhyD4_17410 PF16124 RecQ zinc-binding AhyD4_17410 PF00270 DEAD/DEAH box helicase AhyD4_17430 PF00271 Helicase conserved C-terminal domain AhyD4_17430 PF16124 RecQ zinc-binding AhyD4_17430 PF00570 HRDC domain AhyD4_17430 PF00270 DEAD/DEAH box helicase AhyD4_17430 PF09382 RQC domain AhyD4_17435 PF18337 RapA N-terminal Tudor like domain AhyD4_17435 PF18339 RapA N-terminal Tudor like domain 1 AhyD4_17435 PF00176 SNF2 family N-terminal domain AhyD4_17435 PF00271 Helicase conserved C-terminal domain AhyD4_17435 PF12137 RNA polymerase recycling family C-terminal AhyD4_17460 PF00593 TonB dependent receptor AhyD4_17460 PF07715 TonB-dependent Receptor Plug Domain AhyD4_17480 PF00005 ABC transporter AhyD4_17480 PF12857 TOBE-like domain AhyD4_17485 PF01590 GAF domain AhyD4_17485 PF00158 Sigma-54 interaction domain AhyD4_17520 PF13649 Methyltransferase domain AhyD4_17540 PF03976 Polyphosphate kinase 2 (PPK2) AhyD4_17545 PF01740 STAS domain AhyD4_17545 PF00916 Sulfate permease family AhyD4_17550 PF07995 Glucose / Sorbosone dehydrogenase AhyD4_17560 PF02743 Cache domain AhyD4_17560 PF00672 HAMP domain AhyD4_17560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_17565 PF03573 outer membrane porin, OprD family AhyD4_17570 PF00106 short chain dehydrogenase AhyD4_17590 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AhyD4_17605 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AhyD4_17605 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AhyD4_17610 PF01136 Peptidase family U32 AhyD4_17610 PF12392 Collagenase AhyD4_17615 PF01810 LysE type translocator AhyD4_17620 PF03466 LysR substrate binding domain AhyD4_17620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_17630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_17630 PF02743 Cache domain AhyD4_17630 PF00672 HAMP domain AhyD4_17635 PF00072 Response regulator receiver domain AhyD4_17645 PF07194 P2 response regulator binding domain AhyD4_17645 PF02895 Signal transducing histidine kinase, homodimeric domain AhyD4_17645 PF01584 CheW-like domain AhyD4_17645 PF01627 Hpt domain AhyD4_17645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_17650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_17650 PF12729 Four helix bundle sensory module for signal transduction AhyD4_17650 PF00672 HAMP domain AhyD4_17655 PF01584 CheW-like domain AhyD4_17660 PF02203 Tar ligand binding domain homologue AhyD4_17660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_17660 PF00672 HAMP domain AhyD4_17665 PF01739 CheR methyltransferase, SAM binding domain AhyD4_17665 PF03705 CheR methyltransferase, all-alpha domain AhyD4_17670 PF03975 CheD chemotactic sensory transduction AhyD4_17675 PF00072 Response regulator receiver domain AhyD4_17675 PF01339 CheB methylesterase AhyD4_17680 PF00266 Aminotransferase class-V AhyD4_17710 PF00563 EAL domain AhyD4_17710 PF01590 GAF domain AhyD4_17710 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_17710 PF00989 PAS fold AhyD4_17720 PF12838 4Fe-4S dicluster domain AhyD4_17725 PF00842 Alanine racemase, C-terminal domain AhyD4_17725 PF01168 Alanine racemase, N-terminal domain AhyD4_17730 PF03796 DnaB-like helicase C terminal domain AhyD4_17730 PF00772 DnaB-like helicase N terminal domain AhyD4_17740 PF00563 EAL domain AhyD4_17740 PF12792 CSS motif domain associated with EAL AhyD4_17745 PF02872 5'-nucleotidase, C-terminal domain AhyD4_17745 PF00149 Calcineurin-like phosphoesterase AhyD4_17765 PF00072 Response regulator receiver domain AhyD4_17765 PF00158 Sigma-54 interaction domain AhyD4_17765 PF02954 Bacterial regulatory protein, Fis family AhyD4_17770 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AhyD4_17770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AhyD4_17780 PF04102 SlyX AhyD4_17785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AhyD4_17790 PF09526 Probable metal-binding protein (DUF2387) AhyD4_17800 PF00072 Response regulator receiver domain AhyD4_17800 PF01584 CheW-like domain AhyD4_17805 PF00561 alpha/beta hydrolase fold AhyD4_17810 PF00563 EAL domain AhyD4_17810 PF00360 Phytochrome region AhyD4_17810 PF01590 GAF domain AhyD4_17810 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_17815 PF06794 Uncharacterised protein family (UPF0270) AhyD4_17820 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AhyD4_17820 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AhyD4_17820 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AhyD4_17825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AhyD4_17830 PF00535 Glycosyl transferase family 2 AhyD4_17835 PF01370 NAD dependent epimerase/dehydratase family AhyD4_17835 PF02911 Formyl transferase, C-terminal domain AhyD4_17835 PF00551 Formyl transferase AhyD4_17840 PF01522 Polysaccharide deacetylase AhyD4_17845 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AhyD4_17850 PF00892 EamA-like transporter family AhyD4_17855 PF00893 Small Multidrug Resistance protein AhyD4_17860 PF00485 Phosphoribulokinase / Uridine kinase family AhyD4_17875 PF02566 OsmC-like protein AhyD4_17880 PF13545 Crp-like helix-turn-helix domain AhyD4_17880 PF00027 Cyclic nucleotide-binding domain AhyD4_17885 PF13847 Methyltransferase domain AhyD4_17890 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AhyD4_17890 PF18416 N-acetylglucosamine binding protein domain 2 AhyD4_17895 PF17945 Beta/Gamma crystallin AhyD4_17895 PF12561 ToxR activated gene A lipoprotein domain AhyD4_17900 PF08329 Chitinase A, N-terminal domain AhyD4_17900 PF00704 Glycosyl hydrolases family 18 AhyD4_17905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_17905 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_17905 PF00989 PAS fold AhyD4_17915 PF13443 Cro/C1-type HTH DNA-binding domain AhyD4_17920 PF12832 MFS_1 like family AhyD4_17925 PF07715 TonB-dependent Receptor Plug Domain AhyD4_17925 PF00593 TonB dependent receptor AhyD4_17945 PF01243 Pyridoxamine 5'-phosphate oxidase AhyD4_17950 PF06228 Haem utilisation ChuX/HutX AhyD4_17960 PF01032 FecCD transport family AhyD4_17965 PF00005 ABC transporter AhyD4_17975 PF01370 NAD dependent epimerase/dehydratase family AhyD4_17985 PF01791 DeoC/LacD family aldolase AhyD4_17990 PF07670 Nucleoside recognition AhyD4_17990 PF07662 Na+ dependent nucleoside transporter C-terminus AhyD4_17990 PF01773 Na+ dependent nucleoside transporter N-terminus AhyD4_17995 PF01048 Phosphorylase superfamily AhyD4_18000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_18000 PF03466 LysR substrate binding domain AhyD4_18015 PF01464 Transglycosylase SLT domain AhyD4_18020 PF01048 Phosphorylase superfamily AhyD4_18115 PF01343 Peptidase family S49 AhyD4_18130 PF03354 Phage Terminase AhyD4_18180 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_18185 PF01555 DNA methylase AhyD4_18265 PF01381 Helix-turn-helix AhyD4_18265 PF00717 Peptidase S24-like AhyD4_18305 PF00589 Phage integrase family AhyD4_18305 PF12167 Arm DNA-binding domain AhyD4_18310 PF12848 ABC transporter AhyD4_18310 PF00005 ABC transporter AhyD4_18320 PF00860 Permease family AhyD4_18325 PF00226 DnaJ domain AhyD4_18325 PF05099 Tellurite resistance protein TerB AhyD4_18330 PF00483 Nucleotidyl transferase AhyD4_18335 PF01636 Phosphotransferase enzyme family AhyD4_18340 PF04453 LPS transport system D AhyD4_18340 PF03968 OstA-like protein AhyD4_18345 PF09312 SurA N-terminal domain AhyD4_18345 PF00639 PPIC-type PPIASE domain AhyD4_18350 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AhyD4_18355 PF00398 Ribosomal RNA adenine dimethylase AhyD4_18360 PF04379 ApaG domain AhyD4_18365 PF00149 Calcineurin-like phosphoesterase AhyD4_18375 PF00296 Luciferase-like monooxygenase AhyD4_18395 PF13193 AMP-binding enzyme C-terminal domain AhyD4_18395 PF00501 AMP-binding enzyme AhyD4_18405 PF01926 50S ribosome-binding GTPase AhyD4_18405 PF01018 GTP1/OBG AhyD4_18410 PF01016 Ribosomal L27 protein AhyD4_18415 PF00829 Ribosomal prokaryotic L21 protein AhyD4_18420 PF00348 Polyprenyl synthetase AhyD4_18425 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AhyD4_18430 PF01145 SPFH domain / Band 7 family AhyD4_18435 PF01145 SPFH domain / Band 7 family AhyD4_18435 PF12221 Bacterial membrane protein N terminal AhyD4_18440 PF13167 GTP-binding GTPase N-terminal AhyD4_18440 PF01926 50S ribosome-binding GTPase AhyD4_18440 PF16360 GTP-binding GTPase Middle Region AhyD4_18445 PF17209 Hfq protein AhyD4_18455 PF08676 MutL C terminal dimerisation domain AhyD4_18455 PF01119 DNA mismatch repair protein, C-terminal domain AhyD4_18460 PF01520 N-acetylmuramoyl-L-alanine amidase AhyD4_18465 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AhyD4_18470 PF01256 Carbohydrate kinase AhyD4_18470 PF03853 YjeF-related protein N-terminus AhyD4_18475 PF08331 Domain of unknown function (DUF1730) AhyD4_18480 PF00480 ROK family AhyD4_18495 PF00005 ABC transporter AhyD4_18495 PF09383 NIL domain AhyD4_18500 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_18505 PF03180 NLPA lipoprotein AhyD4_18510 PF02357 Transcription termination factor nusG AhyD4_18515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_18515 PF00672 HAMP domain AhyD4_18515 PF12729 Four helix bundle sensory module for signal transduction AhyD4_18520 PF00563 EAL domain AhyD4_18520 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_18520 PF03707 Bacterial signalling protein N terminal repeat AhyD4_18525 PF00072 Response regulator receiver domain AhyD4_18525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_18525 PF09456 RcsC Alpha-Beta-Loop (ABL) AhyD4_18525 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_18535 PF13286 Phosphohydrolase-associated domain AhyD4_18535 PF01966 HD domain AhyD4_18540 PF00072 Response regulator receiver domain AhyD4_18540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_18540 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_18540 PF18415 Histidine kinase receptor ArcB trans-membrane domain AhyD4_18540 PF01627 Hpt domain AhyD4_18540 PF00989 PAS fold AhyD4_18560 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AhyD4_18565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_18565 PF03466 LysR substrate binding domain AhyD4_18575 PF01259 SAICAR synthetase AhyD4_18580 PF06804 NlpB/DapX lipoprotein AhyD4_18585 PF00701 Dihydrodipicolinate synthetase family AhyD4_18590 PF01842 ACT domain AhyD4_18595 PF00578 AhpC/TSA family AhyD4_18600 PF03887 YfbU domain AhyD4_18605 PF04217 Protein of unknown function, DUF412 AhyD4_18610 PF00871 Acetokinase family AhyD4_18615 PF01515 Phosphate acetyl/butaryl transferase AhyD4_18615 PF07085 DRTGG domain AhyD4_18620 PF10369 Small subunit of acetolactate synthase AhyD4_18625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AhyD4_18625 PF00205 Thiamine pyrophosphate enzyme, central domain AhyD4_18625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AhyD4_18635 PF01569 PAP2 superfamily AhyD4_18645 PF08502 LeuA allosteric (dimerisation) domain AhyD4_18645 PF00682 HMGL-like AhyD4_18650 PF00180 Isocitrate/isopropylmalate dehydrogenase AhyD4_18655 PF00330 Aconitase family (aconitate hydratase) AhyD4_18660 PF00694 Aconitase C-terminal domain AhyD4_18680 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_18685 PF00005 ABC transporter AhyD4_18690 PF13638 PIN domain AhyD4_18690 PF02562 PhoH-like protein AhyD4_18700 PF02867 Ribonucleotide reductase, barrel domain AhyD4_18700 PF00317 Ribonucleotide reductase, all-alpha domain AhyD4_18700 PF08343 Ribonucleotide reductase N-terminal AhyD4_18730 PF12137 RNA polymerase recycling family C-terminal AhyD4_18730 PF00176 SNF2 family N-terminal domain AhyD4_18730 PF00271 Helicase conserved C-terminal domain AhyD4_18730 PF18339 RapA N-terminal Tudor like domain 1 AhyD4_18730 PF18337 RapA N-terminal Tudor like domain AhyD4_18735 PF00849 RNA pseudouridylate synthase AhyD4_18745 PF00563 EAL domain AhyD4_18745 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_18745 PF03707 Bacterial signalling protein N terminal repeat AhyD4_18745 PF13188 PAS domain AhyD4_18755 PF00118 TCP-1/cpn60 chaperonin family AhyD4_18760 PF00166 Chaperonin 10 Kd subunit AhyD4_18765 PF01554 MatE AhyD4_18770 PF04186 FxsA cytoplasmic membrane protein AhyD4_18775 PF00206 Lyase AhyD4_18775 PF10415 Fumarase C C-terminus AhyD4_18780 PF03605 Anaerobic c4-dicarboxylate membrane transporter AhyD4_18785 PF00267 Gram-negative porin AhyD4_18790 PF07690 Major Facilitator Superfamily AhyD4_18795 PF03466 LysR substrate binding domain AhyD4_18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_18800 PF07504 Fungalysin/Thermolysin Propeptide Motif AhyD4_18800 PF03413 Peptidase propeptide and YPEB domain AhyD4_18800 PF04151 Bacterial pre-peptidase C-terminal domain AhyD4_18800 PF02868 Thermolysin metallopeptidase, alpha-helical domain AhyD4_18800 PF01447 Thermolysin metallopeptidase, catalytic domain AhyD4_18810 PF13302 Acetyltransferase (GNAT) domain AhyD4_18820 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AhyD4_18820 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AhyD4_18825 PF07690 Major Facilitator Superfamily AhyD4_18830 PF01725 Ham1 family AhyD4_18835 PF06969 HemN C-terminal domain AhyD4_18835 PF04055 Radical SAM superfamily AhyD4_18840 PF03889 Alternative ribosome-rescue factor A AhyD4_18845 PF01872 RibD C-terminal domain AhyD4_18850 PF13411 MerR HTH family regulatory protein AhyD4_18855 PF01808 AICARFT/IMPCHase bienzyme AhyD4_18855 PF02142 MGS-like domain AhyD4_18860 PF02843 Phosphoribosylglycinamide synthetase, C domain AhyD4_18860 PF02844 Phosphoribosylglycinamide synthetase, N domain AhyD4_18860 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AhyD4_18875 PF00128 Alpha amylase, catalytic domain AhyD4_18890 PF00140 Sigma-70 factor, region 1.2 AhyD4_18890 PF03979 Sigma-70 factor, region 1.1 AhyD4_18890 PF04539 Sigma-70 region 3 AhyD4_18890 PF04546 Sigma-70, non-essential region AhyD4_18890 PF04545 Sigma-70, region 4 AhyD4_18890 PF04542 Sigma-70 region 2 AhyD4_18895 PF01807 CHC2 zinc finger AhyD4_18895 PF08275 DNA primase catalytic core, N-terminal domain AhyD4_18895 PF08278 DNA primase DnaG DnaB-binding AhyD4_18895 PF10410 DnaB-helicase binding domain of primase AhyD4_18900 PF09424 Yqey-like protein AhyD4_18905 PF00814 Glycoprotease family AhyD4_18910 PF00140 Sigma-70 factor, region 1.2 AhyD4_18910 PF04542 Sigma-70 region 2 AhyD4_18910 PF04545 Sigma-70, region 4 AhyD4_18910 PF04539 Sigma-70 region 3 AhyD4_18915 PF01476 LysM domain AhyD4_18915 PF01551 Peptidase family M23 AhyD4_18920 PF09335 SNARE associated Golgi protein AhyD4_18930 PF01975 Survival protein SurE AhyD4_18935 PF01142 tRNA pseudouridine synthase D (TruD) AhyD4_18940 PF02542 YgbB family AhyD4_18945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AhyD4_18950 PF04977 Septum formation initiator AhyD4_18955 PF03952 Enolase, N-terminal domain AhyD4_18955 PF00113 Enolase, C-terminal TIM barrel domain AhyD4_18960 PF06418 CTP synthase N-terminus AhyD4_18960 PF00117 Glutamine amidotransferase class-I AhyD4_18965 PF03819 MazG nucleotide pyrophosphohydrolase domain AhyD4_18970 PF04607 Region found in RelA / SpoT proteins AhyD4_18970 PF13291 ACT domain AhyD4_18970 PF02824 TGS domain AhyD4_18975 PF05958 tRNA (Uracil-5-)-methyltransferase AhyD4_18975 PF01938 TRAM domain AhyD4_18980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_18980 PF00672 HAMP domain AhyD4_18980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AhyD4_18980 PF00072 Response regulator receiver domain AhyD4_18980 PF01627 Hpt domain AhyD4_18980 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_18985 PF07308 Protein of unknown function (DUF1456) AhyD4_18990 PF01510 N-acetylmuramoyl-L-alanine amidase AhyD4_18995 PF00455 DeoR C terminal sensor domain AhyD4_18995 PF08220 DeoR-like helix-turn-helix domain AhyD4_19000 PF08013 Tagatose 6 phosphate kinase AhyD4_19005 PF01380 SIS domain AhyD4_19010 PF03830 PTS system sorbose subfamily IIB component AhyD4_19015 PF03609 PTS system sorbose-specific iic component AhyD4_19020 PF03613 PTS system mannose/fructose/sorbose family IID component AhyD4_19025 PF03610 PTS system fructose IIA component AhyD4_19030 PF01979 Amidohydrolase family AhyD4_19035 PF01116 Fructose-bisphosphate aldolase class-II AhyD4_19045 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AhyD4_19050 PF02565 Recombination protein O C terminal AhyD4_19050 PF11967 Recombination protein O N terminal AhyD4_19055 PF07650 KH domain AhyD4_19055 PF01926 50S ribosome-binding GTPase AhyD4_19060 PF14622 Ribonuclease-III-like AhyD4_19060 PF00035 Double-stranded RNA binding motif AhyD4_19065 PF10502 Signal peptidase, peptidase S26 AhyD4_19070 PF00679 Elongation factor G C-terminus AhyD4_19070 PF00009 Elongation factor Tu GTP binding domain AhyD4_19070 PF03144 Elongation factor Tu domain 2 AhyD4_19070 PF06421 GTP-binding protein LepA C-terminus AhyD4_19080 PF03888 MucB/RseB N-terminal domain AhyD4_19080 PF17188 MucB/RseB C-terminal domain AhyD4_19085 PF03872 Anti sigma-E protein RseA, N-terminal domain AhyD4_19085 PF03873 Anti sigma-E protein RseA, C-terminal domain AhyD4_19090 PF08281 Sigma-70, region 4 AhyD4_19090 PF04542 Sigma-70 region 2 AhyD4_19095 PF02910 Fumarate reductase flavoprotein C-term AhyD4_19095 PF00890 FAD binding domain AhyD4_19105 PF03937 Flavinator of succinate dehydrogenase AhyD4_19110 PF01571 Aminomethyltransferase folate-binding domain AhyD4_19115 PF03466 LysR substrate binding domain AhyD4_19115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_19130 PF03091 CutA1 divalent ion tolerance protein AhyD4_19135 PF02683 Cytochrome C biogenesis protein transmembrane region AhyD4_19135 PF11412 Disulphide bond corrector protein DsbC AhyD4_19145 PF01266 FAD dependent oxidoreductase AhyD4_19150 PF01116 Fructose-bisphosphate aldolase class-II AhyD4_19155 PF00162 Phosphoglycerate kinase AhyD4_19160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AhyD4_19160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AhyD4_19165 PF00480 ROK family AhyD4_19170 PF01208 Uroporphyrinogen decarboxylase (URO-D) AhyD4_19175 PF00293 NUDIX domain AhyD4_19175 PF09297 NADH pyrophosphatase zinc ribbon domain AhyD4_19180 PF00171 Aldehyde dehydrogenase family AhyD4_19180 PF14850 DNA-binding domain of Proline dehydrogenase AhyD4_19180 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AhyD4_19180 PF01619 Proline dehydrogenase AhyD4_19185 PF08239 Bacterial SH3 domain AhyD4_19190 PF00520 Ion transport protein AhyD4_19190 PF00027 Cyclic nucleotide-binding domain AhyD4_19195 PF02743 Cache domain AhyD4_19195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_19195 PF00672 HAMP domain AhyD4_19205 PF08335 GlnD PII-uridylyltransferase AhyD4_19205 PF03710 Glutamate-ammonia ligase adenylyltransferase AhyD4_19225 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AhyD4_19225 PF00326 Prolyl oligopeptidase family AhyD4_19230 PF00291 Pyridoxal-phosphate dependent enzyme AhyD4_19235 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_19240 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_19245 PF00005 ABC transporter AhyD4_19250 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_19255 PF02687 FtsX-like permease family AhyD4_19255 PF12704 MacB-like periplasmic core domain AhyD4_19255 PF00005 ABC transporter AhyD4_19260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AhyD4_19265 PF00486 Transcriptional regulatory protein, C terminal AhyD4_19265 PF00072 Response regulator receiver domain AhyD4_19270 PF00672 HAMP domain AhyD4_19270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_19270 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_19270 PF16527 Two-component sensor protein CpxA, periplasmic domain AhyD4_19275 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AhyD4_19275 PF00293 NUDIX domain AhyD4_19275 PF09297 NADH pyrophosphatase zinc ribbon domain AhyD4_19310 PF03060 Nitronate monooxygenase AhyD4_19320 PF00445 Ribonuclease T2 family AhyD4_19335 PF03150 Di-haem cytochrome c peroxidase AhyD4_19335 PF00034 Cytochrome c AhyD4_19340 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase AhyD4_19355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_19355 PF03466 LysR substrate binding domain AhyD4_19360 PF00271 Helicase conserved C-terminal domain AhyD4_19360 PF00270 DEAD/DEAH box helicase AhyD4_19370 PF00753 Metallo-beta-lactamase superfamily AhyD4_19375 PF01425 Amidase AhyD4_19380 PF04371 Porphyromonas-type peptidyl-arginine deiminase AhyD4_19385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_19385 PF03466 LysR substrate binding domain AhyD4_19395 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AhyD4_19400 PF00583 Acetyltransferase (GNAT) family AhyD4_19420 PF00009 Elongation factor Tu GTP binding domain AhyD4_19420 PF03144 Elongation factor Tu domain 2 AhyD4_19420 PF16658 Class II release factor RF3, C-terminal domain AhyD4_19425 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_19425 PF00072 Response regulator receiver domain AhyD4_19430 PF00563 EAL domain AhyD4_19430 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_19430 PF13426 PAS domain AhyD4_19435 PF05762 VWA domain containing CoxE-like protein AhyD4_19440 PF12592 Protein of unknown function (DUF3763) AhyD4_19440 PF17868 AAA lid domain AhyD4_19440 PF07728 AAA domain (dynein-related subfamily) AhyD4_19450 PF00583 Acetyltransferase (GNAT) family AhyD4_19460 PF00501 AMP-binding enzyme AhyD4_19470 PF04262 Glutamate-cysteine ligase AhyD4_19475 PF00675 Insulinase (Peptidase family M16) AhyD4_19475 PF05193 Peptidase M16 inactive domain AhyD4_19480 PF09335 SNARE associated Golgi protein AhyD4_19485 PF00698 Acyl transferase domain AhyD4_19485 PF08240 Alcohol dehydrogenase GroES-like domain AhyD4_19485 PF08659 KR domain AhyD4_19485 PF08990 Erythronolide synthase docking AhyD4_19485 PF00109 Beta-ketoacyl synthase, N-terminal domain AhyD4_19485 PF16197 Ketoacyl-synthetase C-terminal extension AhyD4_19485 PF14765 Polyketide synthase dehydratase AhyD4_19485 PF00550 Phosphopantetheine attachment site AhyD4_19485 PF02801 Beta-ketoacyl synthase, C-terminal domain AhyD4_19500 PF00175 Oxidoreductase NAD-binding domain AhyD4_19500 PF00970 Oxidoreductase FAD-binding domain AhyD4_19505 PF01281 Ribosomal protein L9, N-terminal domain AhyD4_19505 PF03948 Ribosomal protein L9, C-terminal domain AhyD4_19510 PF01084 Ribosomal protein S18 AhyD4_19515 PF01250 Ribosomal protein S6 AhyD4_19520 PF01566 Natural resistance-associated macrophage protein AhyD4_19540 PF13673 Acetyltransferase (GNAT) domain AhyD4_19550 PF08032 RNA 2'-O ribose methyltransferase substrate binding AhyD4_19550 PF00588 SpoU rRNA Methylase family AhyD4_19555 PF08461 Ribonuclease R winged-helix domain AhyD4_19555 PF08206 Ribonuclease B OB domain AhyD4_19555 PF17876 Cold shock domain AhyD4_19555 PF00575 S1 RNA binding domain AhyD4_19555 PF00773 RNB domain AhyD4_19560 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_19565 PF02664 S-Ribosylhomocysteinase (LuxS) AhyD4_19575 PF00543 Nitrogen regulatory protein P-II AhyD4_19580 PF00795 Carbon-nitrogen hydrolase AhyD4_19580 PF02540 NAD synthase AhyD4_19615 PF05567 Neisseria PilC beta-propeller domain AhyD4_19640 PF02401 LytB protein AhyD4_19645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AhyD4_19650 PF01252 Signal peptidase (SPase) II AhyD4_19655 PF06827 Zinc finger found in FPG and IleRS AhyD4_19655 PF08264 Anticodon-binding domain of tRNA AhyD4_19655 PF00133 tRNA synthetases class I (I, L, M and V) AhyD4_19660 PF01687 Riboflavin kinase AhyD4_19660 PF06574 FAD synthetase AhyD4_19665 PF03023 Lipid II flippase MurJ AhyD4_19670 PF01649 Ribosomal protein S20 AhyD4_19675 PF01022 Bacterial regulatory protein, arsR family AhyD4_19680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_19680 PF03466 LysR substrate binding domain AhyD4_19690 PF06965 Na+/H+ antiporter 1 AhyD4_19695 PF00303 Thymidylate synthase AhyD4_19700 PF01790 Prolipoprotein diacylglyceryl transferase AhyD4_19705 PF01590 GAF domain AhyD4_19705 PF05524 PEP-utilising enzyme, N-terminal AhyD4_19705 PF02896 PEP-utilising enzyme, TIM barrel domain AhyD4_19705 PF00391 PEP-utilising enzyme, mobile domain AhyD4_19710 PF00293 NUDIX domain AhyD4_19715 PF02976 DNA mismatch repair enzyme MutH AhyD4_19725 PF01245 Ribosomal protein L19 AhyD4_19730 PF01746 tRNA (Guanine-1)-methyltransferase AhyD4_19735 PF05239 PRC-barrel domain AhyD4_19735 PF01782 RimM N-terminal domain AhyD4_19740 PF00886 Ribosomal protein S16 AhyD4_19745 PF02881 SRP54-type protein, helical bundle domain AhyD4_19745 PF02978 Signal peptide binding domain AhyD4_19745 PF00448 SRP54-type protein, GTPase domain AhyD4_19750 PF01578 Cytochrome C assembly protein AhyD4_19755 PF03471 Transporter associated domain AhyD4_19755 PF01595 Cyclin M transmembrane N-terminal domain AhyD4_19755 PF00571 CBS domain AhyD4_19760 PF02082 Transcriptional regulator AhyD4_19765 PF00175 Oxidoreductase NAD-binding domain AhyD4_19765 PF00042 Globin AhyD4_19765 PF00970 Oxidoreductase FAD-binding domain AhyD4_19770 PF08238 Sel1 repeat AhyD4_19775 PF00056 lactate/malate dehydrogenase, NAD binding domain AhyD4_19775 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AhyD4_19780 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_19785 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_19790 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_19795 PF00005 ABC transporter AhyD4_19800 PF01316 Arginine repressor, DNA binding domain AhyD4_19800 PF02863 Arginine repressor, C-terminal domain AhyD4_19805 PF04261 Dyp-type peroxidase family AhyD4_19810 PF00005 ABC transporter AhyD4_19810 PF08402 TOBE domain AhyD4_19820 PF13416 Bacterial extracellular solute-binding protein AhyD4_19825 PF00543 Nitrogen regulatory protein P-II AhyD4_19830 PF00472 RF-1 domain AhyD4_19835 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AhyD4_19835 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AhyD4_19840 PF07662 Na+ dependent nucleoside transporter C-terminus AhyD4_19840 PF01773 Na+ dependent nucleoside transporter N-terminus AhyD4_19840 PF07670 Nucleoside recognition AhyD4_19845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_19845 PF03466 LysR substrate binding domain AhyD4_19850 PF00255 Glutathione peroxidase AhyD4_19860 PF02595 Glycerate kinase family AhyD4_19865 PF02447 GntP family permease AhyD4_19870 PF05651 Putative sugar diacid recognition AhyD4_19870 PF17853 GGDEF-like domain AhyD4_19870 PF13556 PucR C-terminal helix-turn-helix domain AhyD4_19875 PF06062 Uncharacterised protein family (UPF0231) AhyD4_19890 PF08447 PAS fold AhyD4_19890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_19895 PF03372 Endonuclease/Exonuclease/phosphatase family AhyD4_19910 PF00271 Helicase conserved C-terminal domain AhyD4_19910 PF00270 DEAD/DEAH box helicase AhyD4_19920 PF08534 Redoxin AhyD4_19925 PF00403 Heavy-metal-associated domain AhyD4_19930 PF18494 Pullulanase Ins domain AhyD4_19930 PF17967 Pullulanase N2 domain AhyD4_19930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AhyD4_19930 PF03714 Bacterial pullanase-associated domain AhyD4_19930 PF11852 Domain of unknown function (DUF3372) AhyD4_19945 PF02583 Metal-sensitive transcriptional repressor AhyD4_19950 PF00155 Aminotransferase class I and II AhyD4_19955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_19955 PF03466 LysR substrate binding domain AhyD4_19965 PF04055 Radical SAM superfamily AhyD4_19970 PF11230 Protein of unknown function (DUF3029) AhyD4_19990 PF14685 Tricorn protease PDZ domain AhyD4_19990 PF03572 Peptidase family S41 AhyD4_19990 PF07676 WD40-like Beta Propeller Repeat AhyD4_19990 PF14684 Tricorn protease C1 domain AhyD4_20020 PF12729 Four helix bundle sensory module for signal transduction AhyD4_20020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_20020 PF00672 HAMP domain AhyD4_20025 PF18416 N-acetylglucosamine binding protein domain 2 AhyD4_20025 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AhyD4_20030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_20030 PF03466 LysR substrate binding domain AhyD4_20035 PF12857 TOBE-like domain AhyD4_20035 PF00005 ABC transporter AhyD4_20040 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_20045 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_20060 PF13194 Domain of unknown function (DUF4010) AhyD4_20065 PF12464 Maltose acetyltransferase AhyD4_20065 PF14602 Hexapeptide repeat of succinyl-transferase AhyD4_20090 PF00206 Lyase AhyD4_20090 PF14698 Argininosuccinate lyase C-terminal AhyD4_20095 PF00764 Arginosuccinate synthase AhyD4_20100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AhyD4_20100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AhyD4_20105 PF00696 Amino acid kinase family AhyD4_20110 PF02774 Semialdehyde dehydrogenase, dimerisation domain AhyD4_20110 PF01118 Semialdehyde dehydrogenase, NAD binding domain AhyD4_20115 PF07687 Peptidase dimerisation domain AhyD4_20115 PF01546 Peptidase family M20/M25/M40 AhyD4_20120 PF00311 Phosphoenolpyruvate carboxylase AhyD4_20130 PF03447 Homoserine dehydrogenase, NAD binding domain AhyD4_20130 PF00742 Homoserine dehydrogenase AhyD4_20130 PF00696 Amino acid kinase family AhyD4_20135 PF01053 Cys/Met metabolism PLP-dependent enzyme AhyD4_20140 PF01340 Met Apo-repressor, MetJ AhyD4_20145 PF12833 Helix-turn-helix domain AhyD4_20145 PF06445 GyrI-like small molecule binding domain AhyD4_20150 PF01588 Putative tRNA binding domain AhyD4_20155 PF03222 Tryptophan/tyrosine permease family AhyD4_20160 PF00459 Inositol monophosphatase family AhyD4_20165 PF00293 NUDIX domain AhyD4_20170 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_20175 PF00579 tRNA synthetases class I (W and Y) AhyD4_20175 PF01479 S4 domain AhyD4_20180 PF00196 Bacterial regulatory proteins, luxR family AhyD4_20185 PF01203 Type II secretion system (T2SS), protein N AhyD4_20190 PF04612 Type II secretion system (T2SS), protein M AhyD4_20195 PF12693 GspL periplasmic domain AhyD4_20195 PF05134 Type II secretion system (T2SS), protein L AhyD4_20200 PF03934 Type II secretion system (T2SS), protein K AhyD4_20205 PF07963 Prokaryotic N-terminal methylation motif AhyD4_20205 PF11612 Type II secretion system (T2SS), protein J AhyD4_20210 PF02501 Type II secretion system (T2SS), protein I AhyD4_20210 PF07963 Prokaryotic N-terminal methylation motif AhyD4_20215 PF07963 Prokaryotic N-terminal methylation motif AhyD4_20215 PF12019 Type II transport protein GspH AhyD4_20220 PF07963 Prokaryotic N-terminal methylation motif AhyD4_20220 PF08334 Type II secretion system (T2SS), protein G AhyD4_20225 PF00482 Type II secretion system (T2SS), protein F AhyD4_20230 PF00437 Type II/IV secretion system protein AhyD4_20235 PF03958 Bacterial type II/III secretion system short domain AhyD4_20235 PF00263 Bacterial type II and III secretion system protein AhyD4_20240 PF11356 Type II secretion system protein C AhyD4_20245 PF01479 S4 domain AhyD4_20250 PF01430 Hsp33 protein AhyD4_20260 PF00392 Bacterial regulatory proteins, gntR family AhyD4_20265 PF00557 Metallopeptidase family M24 AhyD4_20265 PF01321 Creatinase/Prolidase N-terminal domain AhyD4_20270 PF11756 Nitrous oxide-stimulated promoter AhyD4_20275 PF00583 Acetyltransferase (GNAT) family AhyD4_20280 PF05433 Glycine zipper 2TM domain AhyD4_20285 PF02872 5'-nucleotidase, C-terminal domain AhyD4_20285 PF00149 Calcineurin-like phosphoesterase AhyD4_20290 PF01810 LysE type translocator AhyD4_20295 PF00196 Bacterial regulatory proteins, luxR family AhyD4_20295 PF03472 Autoinducer binding domain AhyD4_20300 PF00765 Autoinducer synthase AhyD4_20305 PF03466 LysR substrate binding domain AhyD4_20305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_20310 PF08206 Ribonuclease B OB domain AhyD4_20310 PF00773 RNB domain AhyD4_20310 PF17876 Cold shock domain AhyD4_20315 PF00440 Bacterial regulatory proteins, tetR family AhyD4_20325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AhyD4_20325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AhyD4_20325 PF02378 Phosphotransferase system, EIIC AhyD4_20330 PF01232 Mannitol dehydrogenase Rossmann domain AhyD4_20330 PF08125 Mannitol dehydrogenase C-terminal domain AhyD4_20335 PF05068 Mannitol repressor AhyD4_20340 PF00999 Sodium/hydrogen exchanger family AhyD4_20340 PF03471 Transporter associated domain AhyD4_20340 PF02080 TrkA-C domain AhyD4_20360 PF01544 CorA-like Mg2+ transporter protein AhyD4_20365 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AhyD4_20380 PF04307 LexA-binding, inner membrane-associated putative hydrolase AhyD4_20385 PF01773 Na+ dependent nucleoside transporter N-terminus AhyD4_20385 PF07670 Nucleoside recognition AhyD4_20385 PF07662 Na+ dependent nucleoside transporter C-terminus AhyD4_20390 PF00271 Helicase conserved C-terminal domain AhyD4_20390 PF00270 DEAD/DEAH box helicase AhyD4_20390 PF03880 DbpA RNA binding domain AhyD4_20415 PF01040 UbiA prenyltransferase family AhyD4_20420 PF00425 chorismate binding enzyme AhyD4_20425 PF16582 Middle domain of thiamine pyrophosphate AhyD4_20425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AhyD4_20425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AhyD4_20430 PF12697 Alpha/beta hydrolase family AhyD4_20435 PF00378 Enoyl-CoA hydratase/isomerase AhyD4_20440 PF13378 Enolase C-terminal domain-like AhyD4_20445 PF00501 AMP-binding enzyme AhyD4_20455 PF00419 Fimbrial protein AhyD4_20460 PF00419 Fimbrial protein AhyD4_20465 PF02753 Pili assembly chaperone PapD, C-terminal domain AhyD4_20465 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AhyD4_20470 PF00577 Outer membrane usher protein AhyD4_20470 PF13954 PapC N-terminal domain AhyD4_20470 PF13953 PapC C-terminal domain AhyD4_20480 PF00419 Fimbrial protein AhyD4_20490 PF01752 Collagenase AhyD4_20490 PF08453 Peptidase family M9 N-terminal AhyD4_20495 PF02698 DUF218 domain AhyD4_20500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AhyD4_20500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AhyD4_20510 PF00561 alpha/beta hydrolase fold AhyD4_20515 PF03280 Proteobacterial lipase chaperone protein AhyD4_20530 PF12793 Sugar transport-related sRNA regulator N-term AhyD4_20530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AhyD4_20535 PF01053 Cys/Met metabolism PLP-dependent enzyme AhyD4_20545 PF00465 Iron-containing alcohol dehydrogenase AhyD4_20560 PF03577 Peptidase family C69 AhyD4_20565 PF00106 short chain dehydrogenase AhyD4_20585 PF02308 MgtC family AhyD4_20590 PF16657 Maltogenic Amylase, C-terminal domain AhyD4_20590 PF02903 Alpha amylase, N-terminal ig-like domain AhyD4_20590 PF00128 Alpha amylase, catalytic domain AhyD4_20605 PF00884 Sulfatase AhyD4_20610 PF01037 Lrp/AsnC ligand binding domain AhyD4_20620 PF04204 Homoserine O-succinyltransferase AhyD4_20625 PF12072 Domain of unknown function (DUF3552) AhyD4_20625 PF01966 HD domain AhyD4_20625 PF00013 KH domain AhyD4_20630 PF00994 Probable molybdopterin binding domain AhyD4_20630 PF02464 Competence-damaged protein AhyD4_20645 PF00005 ABC transporter AhyD4_20665 PF07722 Peptidase C26 AhyD4_20675 PF13545 Crp-like helix-turn-helix domain AhyD4_20675 PF00027 Cyclic nucleotide-binding domain AhyD4_20685 PF13419 Haloacid dehalogenase-like hydrolase AhyD4_20690 PF00589 Phage integrase family AhyD4_20690 PF02899 Phage integrase, N-terminal SAM-like domain AhyD4_20700 PF01678 Diaminopimelate epimerase AhyD4_20705 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AhyD4_20705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AhyD4_20710 PF01491 Frataxin-like domain AhyD4_20715 PF02230 Phospholipase/Carboxylesterase AhyD4_20720 PF12633 Adenylate cyclase NT domain AhyD4_20720 PF01295 Adenylate cyclase, class-I AhyD4_20725 PF03900 Porphobilinogen deaminase, C-terminal domain AhyD4_20725 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AhyD4_20730 PF02602 Uroporphyrinogen-III synthase HemD AhyD4_20735 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AhyD4_20745 PF03692 Putative zinc- or iron-chelating domain AhyD4_20750 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AhyD4_20765 PF07715 TonB-dependent Receptor Plug Domain AhyD4_20765 PF00593 TonB dependent receptor AhyD4_20790 PF01638 HxlR-like helix-turn-helix AhyD4_20795 PF08803 Putative mono-oxygenase ydhR AhyD4_20810 PF06055 Exopolysaccharide synthesis, ExoD AhyD4_20820 PF17151 Periplasmic sensor domain AhyD4_20820 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_20835 PF13036 Peptidoglycan-synthase activator LpoB AhyD4_20845 PF04055 Radical SAM superfamily AhyD4_20845 PF06968 Biotin and Thiamin Synthesis associated domain AhyD4_20850 PF05690 Thiazole biosynthesis protein ThiG AhyD4_20860 PF00899 ThiF family AhyD4_20865 PF02581 Thiamine monophosphate synthase AhyD4_20870 PF13667 ThiC-associated domain AhyD4_20870 PF01964 Radical SAM ThiC family AhyD4_20875 PF03440 Aerolysin/Pertussis toxin (APT) domain AhyD4_20875 PF01117 Aerolysin toxin AhyD4_20890 PF00486 Transcriptional regulatory protein, C terminal AhyD4_20890 PF00072 Response regulator receiver domain AhyD4_20900 PF05525 Branched-chain amino acid transport protein AhyD4_20905 PF08443 RimK-like ATP-grasp domain AhyD4_20905 PF18030 RimK PreATP-grasp domain AhyD4_20910 PF00809 Pterin binding enzyme AhyD4_20910 PF02574 Homocysteine S-methyltransferase AhyD4_20910 PF02965 Vitamin B12 dependent methionine synthase, activation domain AhyD4_20910 PF02607 B12 binding domain AhyD4_20910 PF02310 B12 binding domain AhyD4_20915 PF00999 Sodium/hydrogen exchanger family AhyD4_20945 PF04320 Protein with unknown function (DUF469) AhyD4_20950 PF00419 Fimbrial protein AhyD4_20955 PF01389 OmpA-like transmembrane domain AhyD4_20955 PF00691 OmpA family AhyD4_20960 PF13953 PapC C-terminal domain AhyD4_20960 PF13954 PapC N-terminal domain AhyD4_20960 PF00577 Outer membrane usher protein AhyD4_20965 PF02753 Pili assembly chaperone PapD, C-terminal domain AhyD4_20965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AhyD4_20985 PF00419 Fimbrial protein AhyD4_21010 PF08668 HDOD domain AhyD4_21020 PF04228 Putative neutral zinc metallopeptidase AhyD4_21025 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AhyD4_21040 PF08447 PAS fold AhyD4_21040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AhyD4_21040 PF13426 PAS domain AhyD4_21045 PF08678 Rsbr N terminal AhyD4_21045 PF01740 STAS domain AhyD4_21050 PF13581 Histidine kinase-like ATPase domain AhyD4_21055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AhyD4_21055 PF00072 Response regulator receiver domain AhyD4_21055 PF01627 Hpt domain AhyD4_21055 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_21055 PF00672 HAMP domain AhyD4_21055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_21060 PF00072 Response regulator receiver domain AhyD4_21070 PF07690 Major Facilitator Superfamily AhyD4_21075 PF01914 MarC family integral membrane protein AhyD4_21085 PF13580 SIS domain AhyD4_21090 PF02378 Phosphotransferase system, EIIC AhyD4_21090 PF00367 phosphotransferase system, EIIB AhyD4_21105 PF01380 SIS domain AhyD4_21105 PF01418 Helix-turn-helix domain, rpiR family AhyD4_21110 PF01523 Putative modulator of DNA gyrase AhyD4_21115 PF00795 Carbon-nitrogen hydrolase AhyD4_21125 PF13502 AsmA-like C-terminal region AhyD4_21125 PF13116 Protein of unknown function AhyD4_21130 PF00575 S1 RNA binding domain AhyD4_21130 PF10150 Ribonuclease E/G family AhyD4_21135 PF02545 Maf-like protein AhyD4_21140 PF04093 rod shape-determining protein MreD AhyD4_21145 PF04085 rod shape-determining protein MreC AhyD4_21175 PF07963 Prokaryotic N-terminal methylation motif AhyD4_21175 PF14245 Type IV pilin PilA AhyD4_21180 PF00114 Pilin (bacterial filament) AhyD4_21180 PF07963 Prokaryotic N-terminal methylation motif AhyD4_21195 PF00482 Type II secretion system (T2SS), protein F AhyD4_21200 PF00437 Type II/IV secretion system protein AhyD4_21200 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AhyD4_21210 PF13401 AAA domain AhyD4_21210 PF09077 Mu B transposition protein, C terminal AhyD4_21215 PF00263 Bacterial type II and III secretion system protein AhyD4_21215 PF03958 Bacterial type II/III secretion system short domain AhyD4_21245 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_21245 PF17157 Gammaproteobacterial periplasmic sensor domain AhyD4_21245 PF00563 EAL domain AhyD4_21250 PF12792 CSS motif domain associated with EAL AhyD4_21250 PF00563 EAL domain AhyD4_21255 PF01699 Sodium/calcium exchanger protein AhyD4_21260 PF00221 Aromatic amino acid lyase AhyD4_21265 PF01175 Urocanase Rossmann-like domain AhyD4_21265 PF17392 Urocanase C-terminal domain AhyD4_21265 PF17391 Urocanase N-terminal domain AhyD4_21270 PF00491 Arginase family AhyD4_21275 PF01979 Amidohydrolase family AhyD4_21280 PF00392 Bacterial regulatory proteins, gntR family AhyD4_21280 PF07702 UTRA domain AhyD4_21285 PF00484 Carbonic anhydrase AhyD4_21290 PF04545 Sigma-70, region 4 AhyD4_21290 PF04542 Sigma-70 region 2 AhyD4_21290 PF00140 Sigma-70 factor, region 1.2 AhyD4_21295 PF18075 FtsX extracellular domain AhyD4_21300 PF00005 ABC transporter AhyD4_21305 PF02881 SRP54-type protein, helical bundle domain AhyD4_21305 PF00448 SRP54-type protein, GTPase domain AhyD4_21325 PF00440 Bacterial regulatory proteins, tetR family AhyD4_21335 PF13091 PLD-like domain AhyD4_21340 PF01464 Transglycosylase SLT domain AhyD4_21350 PF02416 mttA/Hcf106 family AhyD4_21355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_21355 PF03466 LysR substrate binding domain AhyD4_21360 PF01914 MarC family integral membrane protein AhyD4_21365 PF10678 Protein of unknown function (DUF2492) AhyD4_21370 PF00375 Sodium:dicarboxylate symporter family AhyD4_21380 PF03466 LysR substrate binding domain AhyD4_21380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_21385 PF13533 Biotin-lipoyl like AhyD4_21390 PF07690 Major Facilitator Superfamily AhyD4_21395 PF07947 YhhN family AhyD4_21410 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AhyD4_21410 PF00326 Prolyl oligopeptidase family AhyD4_21425 PF00106 short chain dehydrogenase AhyD4_21430 PF03466 LysR substrate binding domain AhyD4_21430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_21435 PF02525 Flavodoxin-like fold AhyD4_21440 PF02254 TrkA-N domain AhyD4_21440 PF00999 Sodium/hydrogen exchanger family AhyD4_21480 PF01196 Ribosomal protein L17 AhyD4_21485 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AhyD4_21485 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AhyD4_21485 PF01000 RNA polymerase Rpb3/RpoA insert domain AhyD4_21490 PF01479 S4 domain AhyD4_21490 PF00163 Ribosomal protein S4/S9 N-terminal domain AhyD4_21495 PF00411 Ribosomal protein S11 AhyD4_21500 PF00416 Ribosomal protein S13/S18 AhyD4_21505 PF00344 SecY translocase AhyD4_21510 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AhyD4_21515 PF00333 Ribosomal protein S5, N-terminal domain AhyD4_21515 PF03719 Ribosomal protein S5, C-terminal domain AhyD4_21520 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AhyD4_21525 PF00347 Ribosomal protein L6 AhyD4_21530 PF00410 Ribosomal protein S8 AhyD4_21535 PF00253 Ribosomal protein S14p/S29e AhyD4_21540 PF00281 Ribosomal protein L5 AhyD4_21540 PF00673 ribosomal L5P family C-terminus AhyD4_21545 PF00467 KOW motif AhyD4_21545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AhyD4_21550 PF00238 Ribosomal protein L14p/L23e AhyD4_21555 PF00366 Ribosomal protein S17 AhyD4_21560 PF00831 Ribosomal L29 protein AhyD4_21565 PF00252 Ribosomal protein L16p/L10e AhyD4_21570 PF07650 KH domain AhyD4_21570 PF00189 Ribosomal protein S3, C-terminal domain AhyD4_21575 PF00237 Ribosomal protein L22p/L17e AhyD4_21580 PF00203 Ribosomal protein S19 AhyD4_21585 PF03947 Ribosomal Proteins L2, C-terminal domain AhyD4_21585 PF00181 Ribosomal Proteins L2, RNA binding domain AhyD4_21590 PF00276 Ribosomal protein L23 AhyD4_21595 PF00573 Ribosomal protein L4/L1 family AhyD4_21600 PF00297 Ribosomal protein L3 AhyD4_21605 PF00338 Ribosomal protein S10p/S20e AhyD4_21615 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_21615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_21615 PF00672 HAMP domain AhyD4_21620 PF00072 Response regulator receiver domain AhyD4_21620 PF00486 Transcriptional regulatory protein, C terminal AhyD4_21625 PF01272 Transcription elongation factor, GreA/GreB, C-term AhyD4_21625 PF03449 Transcription elongation factor, N-terminal AhyD4_21630 PF09371 Tex-like protein N-terminal domain AhyD4_21630 PF00575 S1 RNA binding domain AhyD4_21630 PF16921 Tex protein YqgF-like domain AhyD4_21630 PF17674 HHH domain AhyD4_21650 PF00561 alpha/beta hydrolase fold AhyD4_21655 PF00156 Phosphoribosyl transferase domain AhyD4_21660 PF01521 Iron-sulphur cluster biosynthesis AhyD4_21660 PF01106 NifU-like domain AhyD4_21665 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AhyD4_21665 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AhyD4_21670 PF02556 Preprotein translocase subunit SecB AhyD4_21675 PF00581 Rhodanese-like domain AhyD4_21680 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AhyD4_21680 PF01676 Metalloenzyme superfamily AhyD4_21685 PF01551 Peptidase family M23 AhyD4_21695 PF00356 Bacterial regulatory proteins, lacI family AhyD4_21695 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AhyD4_21700 PF01081 KDPG and KHG aldolase AhyD4_21705 PF00920 Dehydratase family AhyD4_21710 PF01202 Shikimate kinase AhyD4_21715 PF02447 GntP family permease AhyD4_21720 PF13091 PLD-like domain AhyD4_21725 PF00271 Helicase conserved C-terminal domain AhyD4_21725 PF17191 RecG wedge domain AhyD4_21725 PF00270 DEAD/DEAH box helicase AhyD4_21735 PF00583 Acetyltransferase (GNAT) family AhyD4_21735 PF09500 Putative thioesterase (yiiD_Cterm) AhyD4_21745 PF02580 D-Tyr-tRNA(Tyr) deacylase AhyD4_21750 PF03631 Virulence factor BrkB AhyD4_21760 PF03951 Glutamine synthetase, beta-Grasp domain AhyD4_21760 PF00120 Glutamine synthetase, catalytic domain AhyD4_21770 PF00989 PAS fold AhyD4_21770 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_21770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_21775 PF02954 Bacterial regulatory protein, Fis family AhyD4_21775 PF00158 Sigma-54 interaction domain AhyD4_21775 PF00072 Response regulator receiver domain AhyD4_21780 PF00962 Adenosine/AMP deaminase AhyD4_21785 PF04055 Radical SAM superfamily AhyD4_21785 PF06969 HemN C-terminal domain AhyD4_21790 PF10675 Protein of unknown function (DUF2489) AhyD4_21795 PF04220 Der GTPase activator (YihI) AhyD4_21805 PF00034 Cytochrome c AhyD4_21810 PF01926 50S ribosome-binding GTPase AhyD4_21815 PF07369 Protein of unknown function (DUF1488) AhyD4_21820 PF08501 Shikimate dehydrogenase substrate binding domain AhyD4_21820 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AhyD4_21820 PF01488 Shikimate / quinate 5-dehydrogenase AhyD4_21825 PF01218 Coproporphyrinogen III oxidase AhyD4_21830 PF01300 Telomere recombination AhyD4_21835 PF00731 AIR carboxylase AhyD4_21840 PF01396 Topoisomerase DNA binding C4 zinc finger AhyD4_21845 PF04361 Protein of unknown function (DUF494) AhyD4_21850 PF17782 DprA winged helix domain AhyD4_21850 PF02481 DNA recombination-mediator protein A AhyD4_21860 PF01327 Polypeptide deformylase AhyD4_21865 PF02911 Formyl transferase, C-terminal domain AhyD4_21865 PF00551 Formyl transferase AhyD4_21870 PF01029 NusB family AhyD4_21870 PF01189 16S rRNA methyltransferase RsmB/F AhyD4_21875 PF02080 TrkA-C domain AhyD4_21875 PF02254 TrkA-N domain AhyD4_21880 PF02386 Cation transport protein AhyD4_21885 PF02646 RmuC family AhyD4_21900 PF02082 Transcriptional regulator AhyD4_21905 PF00294 pfkB family carbohydrate kinase AhyD4_21910 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AhyD4_21910 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AhyD4_21915 PF02540 NAD synthase AhyD4_21915 PF00958 GMP synthase C terminal domain AhyD4_21915 PF00117 Glutamine amidotransferase class-I AhyD4_21925 PF00202 Aminotransferase class-III AhyD4_21930 PF01381 Helix-turn-helix AhyD4_21930 PF07883 Cupin domain AhyD4_21935 PF00171 Aldehyde dehydrogenase family AhyD4_21945 PF00892 EamA-like transporter family AhyD4_21950 PF12833 Helix-turn-helix domain AhyD4_21955 PF01810 LysE type translocator AhyD4_21960 PF00690 Cation transporter/ATPase, N-terminus AhyD4_21960 PF00689 Cation transporting ATPase, C-terminus AhyD4_21965 PF04143 Sulphur transport AhyD4_21970 PF01810 LysE type translocator AhyD4_21980 PF06206 CpeT/CpcT family (DUF1001) AhyD4_22005 PF14001 YdfZ protein AhyD4_22015 PF03466 LysR substrate binding domain AhyD4_22015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_22025 PF13361 UvrD-like helicase C-terminal domain AhyD4_22025 PF00580 UvrD/REP helicase N-terminal domain AhyD4_22050 PF03466 LysR substrate binding domain AhyD4_22050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_22055 PF00107 Zinc-binding dehydrogenase AhyD4_22055 PF08240 Alcohol dehydrogenase GroES-like domain AhyD4_22060 PF00756 Putative esterase AhyD4_22070 PF12867 DinB superfamily AhyD4_22070 PF03781 Sulfatase-modifying factor enzyme 1 AhyD4_22075 PF13593 SBF-like CPA transporter family (DUF4137) AhyD4_22080 PF13520 Amino acid permease AhyD4_22085 PF01588 Putative tRNA binding domain AhyD4_22090 PF13520 Amino acid permease AhyD4_22095 PF04074 YhcH/YjgK/YiaL AhyD4_22100 PF02837 Glycosyl hydrolases family 2, sugar binding domain AhyD4_22100 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AhyD4_22100 PF16353 Domain of unknown function(DUF4981) AhyD4_22100 PF02929 Beta galactosidase small chain AhyD4_22100 PF00703 Glycosyl hydrolases family 2 AhyD4_22105 PF00356 Bacterial regulatory proteins, lacI family AhyD4_22140 PF00132 Bacterial transferase hexapeptide (six repeats) AhyD4_22145 PF00476 DNA polymerase family A AhyD4_22145 PF01612 3'-5' exonuclease AhyD4_22145 PF01367 5'-3' exonuclease, C-terminal SAM fold AhyD4_22145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AhyD4_22155 PF06005 Cell division protein ZapB AhyD4_22165 PF06426 Serine acetyltransferase, N-terminal AhyD4_22165 PF00132 Bacterial transferase hexapeptide (six repeats) AhyD4_22170 PF16916 Dimerisation domain of Zinc Transporter AhyD4_22170 PF01545 Cation efflux family AhyD4_22175 PF00486 Transcriptional regulatory protein, C terminal AhyD4_22175 PF00072 Response regulator receiver domain AhyD4_22180 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_22180 PF16527 Two-component sensor protein CpxA, periplasmic domain AhyD4_22180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_22180 PF00672 HAMP domain AhyD4_22185 PF00588 SpoU rRNA Methylase family AhyD4_22190 PF01554 MatE AhyD4_22195 PF02630 SCO1/SenC AhyD4_22205 PF01726 LexA DNA binding domain AhyD4_22205 PF00717 Peptidase S24-like AhyD4_22210 PF01553 Acyltransferase AhyD4_22215 PF01040 UbiA prenyltransferase family AhyD4_22220 PF04345 Chorismate lyase AhyD4_22225 PF03748 Flagellar basal body-associated protein FliL AhyD4_22235 PF00107 Zinc-binding dehydrogenase AhyD4_22235 PF08240 Alcohol dehydrogenase GroES-like domain AhyD4_22240 PF00356 Bacterial regulatory proteins, lacI family AhyD4_22240 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AhyD4_22245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AhyD4_22255 PF03611 PTS system sugar-specific permease component AhyD4_22260 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AhyD4_22265 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AhyD4_22270 PF00535 Glycosyl transferase family 2 AhyD4_22275 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AhyD4_22280 PF01467 Cytidylyltransferase-like AhyD4_22285 PF04393 Protein of unknown function (DUF535) AhyD4_22290 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AhyD4_22290 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AhyD4_22290 PF06827 Zinc finger found in FPG and IleRS AhyD4_22300 PF00471 Ribosomal protein L33 AhyD4_22305 PF04002 RadC-like JAB domain AhyD4_22310 PF04127 DNA / pantothenate metabolism flavoprotein AhyD4_22310 PF02441 Flavoprotein AhyD4_22315 PF00692 dUTPase AhyD4_22320 PF00440 Bacterial regulatory proteins, tetR family AhyD4_22325 PF05552 Conserved TM helix AhyD4_22325 PF00924 Mechanosensitive ion channel AhyD4_22335 PF00342 Phosphoglucose isomerase AhyD4_22340 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AhyD4_22340 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AhyD4_22345 PF03466 LysR substrate binding domain AhyD4_22345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AhyD4_22360 PF13607 Succinyl-CoA ligase like flavodoxin domain AhyD4_22360 PF00583 Acetyltransferase (GNAT) family AhyD4_22360 PF13380 CoA binding domain AhyD4_22385 PF12724 Flavodoxin domain AhyD4_22390 PF02386 Cation transport protein AhyD4_22395 PF09186 Domain of unknown function (DUF1949) AhyD4_22395 PF01205 Uncharacterized protein family UPF0029 AhyD4_22400 PF00557 Metallopeptidase family M24 AhyD4_22405 PF13193 AMP-binding enzyme C-terminal domain AhyD4_22405 PF00501 AMP-binding enzyme AhyD4_22410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AhyD4_22410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AhyD4_22410 PF00378 Enoyl-CoA hydratase/isomerase AhyD4_22415 PF02803 Thiolase, C-terminal domain AhyD4_22415 PF00108 Thiolase, N-terminal domain AhyD4_22420 PF00072 Response regulator receiver domain AhyD4_22420 PF00486 Transcriptional regulatory protein, C terminal AhyD4_22425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_22425 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_22425 PF00672 HAMP domain AhyD4_22430 PF01547 Bacterial extracellular solute-binding protein AhyD4_22440 PF01206 Sulfurtransferase TusA AhyD4_22445 PF01042 Endoribonuclease L-PSP AhyD4_22450 PF00691 OmpA family AhyD4_22450 PF13488 Glycine zipper AhyD4_22455 PF00857 Isochorismatase family AhyD4_22460 PF03352 Methyladenine glycosylase AhyD4_22465 PF02091 Glycyl-tRNA synthetase alpha subunit AhyD4_22470 PF02092 Glycyl-tRNA synthetase beta subunit AhyD4_22470 PF05746 DALR anticodon binding domain AhyD4_22485 PF14306 PUA-like domain AhyD4_22485 PF01747 ATP-sulfurylase AhyD4_22505 PF03222 Tryptophan/tyrosine permease family AhyD4_22510 PF12801 4Fe-4S binding domain AhyD4_22520 PF18113 Rubredoxin binding C-terminal domain AhyD4_22520 PF07992 Pyridine nucleotide-disulphide oxidoreductase AhyD4_22525 PF00258 Flavodoxin AhyD4_22525 PF00301 Rubredoxin AhyD4_22525 PF00753 Metallo-beta-lactamase superfamily AhyD4_22530 PF01590 GAF domain AhyD4_22530 PF00158 Sigma-54 interaction domain AhyD4_22535 PF07702 UTRA domain AhyD4_22535 PF00392 Bacterial regulatory proteins, gntR family AhyD4_22540 PF02378 Phosphotransferase system, EIIC AhyD4_22540 PF00367 phosphotransferase system, EIIB AhyD4_22545 PF11975 Family 4 glycosyl hydrolase C-terminal domain AhyD4_22545 PF02056 Family 4 glycosyl hydrolase AhyD4_22550 PF00356 Bacterial regulatory proteins, lacI family AhyD4_22555 PF13458 Periplasmic binding protein AhyD4_22560 PF02653 Branched-chain amino acid transport system / permease component AhyD4_22565 PF11862 Domain of unknown function (DUF3382) AhyD4_22565 PF02653 Branched-chain amino acid transport system / permease component AhyD4_22570 PF12399 Branched-chain amino acid ATP-binding cassette transporter AhyD4_22570 PF00005 ABC transporter AhyD4_22575 PF00005 ABC transporter AhyD4_22590 PF00581 Rhodanese-like domain AhyD4_22595 PF01694 Rhomboid family AhyD4_22595 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AhyD4_22600 PF12262 Bacterial virulence factor lipase N-terminal AhyD4_22605 PF04380 Membrane fusogenic activity AhyD4_22610 PF00175 Oxidoreductase NAD-binding domain AhyD4_22615 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AhyD4_22625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AhyD4_22625 PF07498 Rho termination factor, N-terminal domain AhyD4_22625 PF07497 Rho termination factor, RNA-binding domain AhyD4_22630 PF00085 Thioredoxin AhyD4_22635 PF00270 DEAD/DEAH box helicase AhyD4_22635 PF00271 Helicase conserved C-terminal domain AhyD4_22640 PF02541 Ppx/GppA phosphatase family AhyD4_22655 PF04445 Putative SAM-dependent methyltransferase AhyD4_22660 PF03707 Bacterial signalling protein N terminal repeat AhyD4_22660 PF00563 EAL domain AhyD4_22660 PF00990 Diguanylate cyclase, GGDEF domain AhyD4_22665 PF01432 Peptidase family M3 AhyD4_22670 PF00490 Delta-aminolevulinic acid dehydratase AhyD4_22675 PF01026 TatD related DNase AhyD4_22680 PF00902 Sec-independent protein translocase protein (TatC) AhyD4_22685 PF02416 mttA/Hcf106 family AhyD4_22690 PF02416 mttA/Hcf106 family AhyD4_22695 PF03109 ABC1 family AhyD4_22700 PF02036 SCP-2 sterol transfer family AhyD4_22705 PF01209 ubiE/COQ5 methyltransferase family AhyD4_22710 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AhyD4_22715 PF07969 Amidohydrolase family AhyD4_22830 PF03544 Gram-negative bacterial TonB protein C-terminal AhyD4_22835 PF02472 Biopolymer transport protein ExbD/TolR AhyD4_22840 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_22845 PF01618 MotA/TolQ/ExbB proton channel family AhyD4_22855 PF03472 Autoinducer binding domain AhyD4_22855 PF00196 Bacterial regulatory proteins, luxR family AhyD4_22860 PF01380 SIS domain AhyD4_22865 PF08220 DeoR-like helix-turn-helix domain AhyD4_22865 PF00455 DeoR C terminal sensor domain AhyD4_22870 PF00486 Transcriptional regulatory protein, C terminal AhyD4_22870 PF00072 Response regulator receiver domain AhyD4_22875 PF00512 His Kinase A (phospho-acceptor) domain AhyD4_22875 PF00672 HAMP domain AhyD4_22875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AhyD4_22880 PF00905 Penicillin binding protein transpeptidase domain AhyD4_22885 PF06123 Inner membrane protein CreD AhyD4_22890 PF00132 Bacterial transferase hexapeptide (six repeats) AhyD4_22890 PF12804 MobA-like NTP transferase domain AhyD4_22890 PF14602 Hexapeptide repeat of succinyl-transferase AhyD4_22895 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AhyD4_22895 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AhyD4_22900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AhyD4_22900 PF02874 ATP synthase alpha/beta family, beta-barrel domain AhyD4_22905 PF00231 ATP synthase AhyD4_22910 PF00306 ATP synthase alpha/beta chain, C terminal domain AhyD4_22910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AhyD4_22910 PF02874 ATP synthase alpha/beta family, beta-barrel domain AhyD4_22915 PF00213 ATP synthase delta (OSCP) subunit AhyD4_22920 PF00430 ATP synthase B/B' CF(0) AhyD4_22925 PF00137 ATP synthase subunit C AhyD4_22930 PF00119 ATP synthase A chain AhyD4_22940 PF02195 ParB-like nuclease domain AhyD4_22940 PF17762 HTH domain found in ParB protein AhyD4_22945 PF13614 AAA domain AhyD4_22950 PF02527 rRNA small subunit methyltransferase G AhyD4_22955 PF13932 GidA associated domain AhyD4_22955 PF01134 Glucose inhibited division protein A AhyD4_22960 PF00258 Flavodoxin AhyD4_22965 PF07715 TonB-dependent Receptor Plug Domain AhyD4_22965 PF00593 TonB dependent receptor AhyD4_22970 PF00005 ABC transporter AhyD4_22975 PF00005 ABC transporter AhyD4_22985 PF01032 FecCD transport family AhyD4_22990 PF10396 GTP-binding protein TrmE N-terminus AhyD4_22990 PF12631 MnmE helical domain AhyD4_22990 PF01926 50S ribosome-binding GTPase AhyD4_22995 PF14849 YidC periplasmic domain AhyD4_22995 PF02096 60Kd inner membrane protein AhyD4_23000 PF00825 Ribonuclease P AhyD4_23005 PF00468 Ribosomal protein L34 AhyD4_23015 PF00528 Binding-protein-dependent transport system inner membrane component AhyD4_23020 PF00497 Bacterial extracellular solute-binding proteins, family 3 AhyD4_23030 PF04851 Type III restriction enzyme, res subunit AhyD4_23030 PF08774 VRR-NUC domain AhyD4_23035 PF01555 DNA methylase AhyD4_23035 PF18273 Type III R-M EcoP15I C-terminal domain AhyD4_23070 PF02463 RecF/RecN/SMC N terminal domain AhyD4_23105 PF07804 HipA-like C-terminal domain AhyD4_23105 PF13657 HipA N-terminal domain AhyD4_23110 PF01381 Helix-turn-helix AhyD4_23115 PF00589 Phage integrase family AhyD4_23115 PF02899 Phage integrase, N-terminal SAM-like domain AhyD4_23230 PF00111 2Fe-2S iron-sulfur cluster binding domain AhyD4_23295 PF07728 AAA domain (dynein-related subfamily) AhyD4_23295 PF08406 CbbQ/NirQ/NorQ C-terminal AhyD4_23320 PF06986 Type-1V conjugative transfer system mating pair stabilisation AhyD4_23325 PF06834 TraU protein AhyD4_23335 PF12477 Sex factor F TraW protein N terminal AhyD4_23355 PF10411 Disulfide bond isomerase protein N-terminus AhyD4_23355 PF13098 Thioredoxin-like domain AhyD4_23450 PF01751 Toprim domain AhyD4_23450 PF01131 DNA topoisomerase AhyD4_23490 PF08535 KorB domain AhyD4_23490 PF06613 KorB C-terminal beta-barrel domain AhyD4_23490 PF02195 ParB-like nuclease domain AhyD4_23495 PF13614 AAA domain AhyD4_23500 PF01695 IstB-like ATP binding protein AhyD4_23505 PF00665 Integrase core domain AhyD4_23560 PF00004 ATPase family associated with various cellular activities (AAA) AhyD4_23560 PF01434 Peptidase family M41 AhyD4_23560 PF17862 AAA+ lid domain AhyD4_23575 PF00216 Bacterial DNA-binding protein AhyD4_23580 PF00565 Staphylococcal nuclease homologue AhyD4_23640 PF04381 Putative exonuclease, RdgC AhyD4_23725 PF06122 Conjugative relaxosome accessory transposon protein AhyD4_23845 PF13154 Protein of unknown function (DUF3991) AhyD4_23845 PF01076 Plasmid recombination enzyme AhyD4_23870 PF13614 AAA domain