AhyD4_00005 SM00382 ATPases associated with a variety of cellular activities AhyD4_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AhyD4_00010 SM00480 DNA polymerase III beta subunit AhyD4_00020 SM00387 Histidine kinase-like ATPases AhyD4_00020 SM00433 TopoisomeraseII AhyD4_00055 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_00065 SM00448 cheY-homologous receiver domain AhyD4_00065 SM00862 Transcriptional regulatory protein, C terminal AhyD4_00070 SM00387 Histidine kinase-like ATPases AhyD4_00070 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_00095 SM00091 PAS domain AhyD4_00095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_00095 SM00387 Histidine kinase-like ATPases AhyD4_00135 SM00458 Ricin-type beta-trefoil AhyD4_00155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_00155 SM00387 Histidine kinase-like ATPases AhyD4_00155 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_00160 SM00448 cheY-homologous receiver domain AhyD4_00190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_00190 SM00954 Region found in RelA / SpoT proteins AhyD4_00195 SM01409 AhyD4_00195 AhyD4_00200 SM00072 Guanylate kinase homologues. AhyD4_00215 SM00267 diguanylate cyclase AhyD4_00255 SM00267 diguanylate cyclase AhyD4_00305 SM00421 helix_turn_helix, Lux Regulon AhyD4_00305 SM00448 cheY-homologous receiver domain AhyD4_00310 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_00310 SM00387 Histidine kinase-like ATPases AhyD4_00310 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_00310 SM00448 cheY-homologous receiver domain AhyD4_00320 SM00387 Histidine kinase-like ATPases AhyD4_00325 SM00448 cheY-homologous receiver domain AhyD4_00325 SM00850 LytTr DNA-binding domain AhyD4_00340 SM01001 AIR carboxylase AhyD4_00370 SM00360 RNA recognition motif AhyD4_00420 SM00382 ATPases associated with a variety of cellular activities AhyD4_00505 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_00520 SM00528 Domain in histone-like proteins of HNS family AhyD4_00535 SM00421 helix_turn_helix, Lux Regulon AhyD4_00565 SM00671 Sel1-like repeats. AhyD4_00640 SM00327 von Willebrand factor (vWF) type A domain AhyD4_00670 SM00052 Putative diguanylate phosphodiesterase AhyD4_00670 SM00267 diguanylate cyclase AhyD4_00680 SM00829 Enoylreductase AhyD4_00750 SM00422 helix_turn_helix, mercury resistance AhyD4_00755 SM00267 diguanylate cyclase AhyD4_00785 SM00382 ATPases associated with a variety of cellular activities AhyD4_00790 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_00815 SM00563 Phosphate acyltransferases AhyD4_00820 SM00563 Phosphate acyltransferases AhyD4_00825 SM00382 ATPases associated with a variety of cellular activities AhyD4_00865 SM00487 DEAD-like helicases superfamily AhyD4_00865 SM00490 helicase superfamily c-terminal domain AhyD4_00880 SM00919 Malic enzyme, NAD binding domain AhyD4_00880 SM01274 AhyD4_00880 AhyD4_00890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_00890 SM00387 Histidine kinase-like ATPases AhyD4_00890 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_00895 SM00448 cheY-homologous receiver domain AhyD4_00895 SM00862 Transcriptional regulatory protein, C terminal AhyD4_00915 SM00642 Alpha-amylase domain AhyD4_00960 SM01230 AhyD4_00960 AhyD4_00980 SM00382 ATPases associated with a variety of cellular activities AhyD4_01015 SM00341 Helicase and RNase D C-terminal AhyD4_01015 SM00487 DEAD-like helicases superfamily AhyD4_01015 SM00490 helicase superfamily c-terminal domain AhyD4_01015 SM00956 AhyD4_01015 AhyD4_01045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_01045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_01045 SM01358 AhyD4_01045 AhyD4_01050 SM00924 MgtE intracellular N domain AhyD4_01085 SM00382 ATPases associated with a variety of cellular activities AhyD4_01085 SM01086 C-terminal, D2-small domain, of ClpB protein AhyD4_01100 SM00836 DALR anticodon binding domain AhyD4_01100 SM01016 Arginyl tRNA synthetase N terminal dom AhyD4_01105 SM00464 Found in ATP-dependent protease La (LON) AhyD4_01150 SM00354 helix_turn _helix lactose operon repressor AhyD4_01155 SM01038 Beta galactosidase small chain AhyD4_01165 SM00382 ATPases associated with a variety of cellular activities AhyD4_01175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_01175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_01240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_01240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_01250 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_01260 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AhyD4_01260 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AhyD4_01300 SM00363 S4 RNA-binding domain AhyD4_01310 SM00382 ATPases associated with a variety of cellular activities AhyD4_01310 SM01086 C-terminal, D2-small domain, of ClpB protein AhyD4_01315 SM00849 Metallo-beta-lactamase superfamily AhyD4_01325 SM00344 helix_turn_helix ASNC type AhyD4_01330 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_01340 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_01355 SM00387 Histidine kinase-like ATPases AhyD4_01355 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_01365 SM00382 ATPases associated with a variety of cellular activities AhyD4_01365 SM00448 cheY-homologous receiver domain AhyD4_01395 SM00448 cheY-homologous receiver domain AhyD4_01395 SM00862 Transcriptional regulatory protein, C terminal AhyD4_01400 SM00387 Histidine kinase-like ATPases AhyD4_01420 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AhyD4_01420 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AhyD4_01420 SM00493 AhyD4_01420 AhyD4_01435 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_01490 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AhyD4_01490 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AhyD4_01495 SM00649 Ribosomal protein L11/L12 AhyD4_01520 SM00663 RNA polymerase I subunit A N-terminus AhyD4_01525 SM01126 AhyD4_01525 AhyD4_01565 SM00838 Elongation factor G C-terminus AhyD4_01565 SM00889 Elongation factor G, domain IV AhyD4_01625 SM01120 AhyD4_01625 AhyD4_01640 SM00091 PAS domain AhyD4_01655 SM00822 AhyD4_01655 AhyD4_01665 SM00014 Acid phosphatase homologues AhyD4_01690 SM01060 AhyD4_01690 AhyD4_01700 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_01700 SM00871 Bacterial transcription activator, effector binding domain AhyD4_01715 SM00267 diguanylate cyclase AhyD4_01725 SM00382 ATPases associated with a variety of cellular activities AhyD4_01750 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_01750 SM00866 AhyD4_01750 AhyD4_01755 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_01810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_01810 SM00091 PAS domain AhyD4_01810 SM00267 diguanylate cyclase AhyD4_01835 SM00448 cheY-homologous receiver domain AhyD4_01835 SM00862 Transcriptional regulatory protein, C terminal AhyD4_01840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_01840 SM00387 Histidine kinase-like ATPases AhyD4_01840 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_01845 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_01845 SM00267 diguanylate cyclase AhyD4_01855 SM00357 Cold shock protein domain AhyD4_01870 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_01880 SM00421 helix_turn_helix, Lux Regulon AhyD4_01900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_01900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_01930 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_02010 SM00382 ATPases associated with a variety of cellular activities AhyD4_02015 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_02035 SM00382 ATPases associated with a variety of cellular activities AhyD4_02110 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AhyD4_02115 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AhyD4_02165 SM00749 bacterial OsmY and nodulation domain AhyD4_02255 SM00842 Cell division protein FtsA AhyD4_02260 SM00864 Tubulin/FtsZ family, GTPase domain AhyD4_02260 SM00865 Tubulin/FtsZ family, C-terminal domain AhyD4_02275 SM00957 SecA DEAD-like domain AhyD4_02275 SM00958 SecA preprotein cross-linking domain AhyD4_02340 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_02340 SM00895 AhyD4_02340 AhyD4_02360 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AhyD4_02360 SM00267 diguanylate cyclase AhyD4_02370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_02375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_02375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_02410 SM00833 Cobalamin synthesis protein cobW C-terminal domain AhyD4_02430 SM00905 Dihydroneopterin aldolase AhyD4_02435 SM01207 AhyD4_02435 AhyD4_02480 SM00260 Two component signalling adaptor domain AhyD4_02480 SM00448 cheY-homologous receiver domain AhyD4_02515 SM00851 MGS-like domain AhyD4_02530 SM00870 AhyD4_02530 AhyD4_02545 SM00354 helix_turn _helix lactose operon repressor AhyD4_02555 SM00642 Alpha-amylase domain AhyD4_02560 SM01266 AhyD4_02560 AhyD4_02565 SM00344 helix_turn_helix ASNC type AhyD4_02595 SM00382 ATPases associated with a variety of cellular activities AhyD4_02665 SM01130 AhyD4_02665 AhyD4_02670 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AhyD4_02670 SM00267 diguanylate cyclase AhyD4_02710 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_02735 SM00478 endonuclease III AhyD4_02735 SM00525 AhyD4_02735 AhyD4_02745 SM00382 ATPases associated with a variety of cellular activities AhyD4_02755 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_02785 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_02795 SM00450 Rhodanese Homology Domain AhyD4_02820 SM01118 AhyD4_02820 AhyD4_02890 SM00387 Histidine kinase-like ATPases AhyD4_02890 SM00433 TopoisomeraseII AhyD4_02895 SM00434 DNA Topoisomerase IV AhyD4_02930 SM00271 DnaJ molecular chaperone homology domain AhyD4_02960 SM00563 Phosphate acyltransferases AhyD4_02995 SM00986 Uracil DNA glycosylase superfamily AhyD4_02995 SM00987 UreE urease accessory protein, C-terminal domain AhyD4_03015 SM00382 ATPases associated with a variety of cellular activities AhyD4_03055 SM00347 helix_turn_helix multiple antibiotic resistance protein AhyD4_03070 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AhyD4_03070 SM00534 ATPase domain of DNA mismatch repair MUTS family AhyD4_03090 SM00382 ATPases associated with a variety of cellular activities AhyD4_03100 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AhyD4_03155 SM01091 Transporter associated domain AhyD4_03265 SM01133 AhyD4_03265 AhyD4_03270 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AhyD4_03285 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AhyD4_03285 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_03285 SM00091 PAS domain AhyD4_03285 SM00267 diguanylate cyclase AhyD4_03310 SM00382 ATPases associated with a variety of cellular activities AhyD4_03325 SM00411 bacterial (prokaryotic) histone like domain AhyD4_03370 SM00487 DEAD-like helicases superfamily AhyD4_03370 SM00490 helicase superfamily c-terminal domain AhyD4_03385 SM00382 ATPases associated with a variety of cellular activities AhyD4_03405 SM01152 AhyD4_03405 AhyD4_03465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_03465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_03470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AhyD4_03475 SM00382 ATPases associated with a variety of cellular activities AhyD4_03585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_03585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_03600 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AhyD4_03610 SM00642 Alpha-amylase domain AhyD4_03615 SM00642 Alpha-amylase domain AhyD4_03635 SM00829 Enoylreductase AhyD4_03645 SM00347 helix_turn_helix multiple antibiotic resistance protein AhyD4_03660 SM00344 helix_turn_helix ASNC type AhyD4_03725 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_03825 SM00382 ATPases associated with a variety of cellular activities AhyD4_03830 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_03840 SM00244 prohibitin homologues AhyD4_03885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_03905 SM00382 ATPases associated with a variety of cellular activities AhyD4_03960 SM00382 ATPases associated with a variety of cellular activities AhyD4_03990 SM00450 Rhodanese Homology Domain AhyD4_04035 SM00487 DEAD-like helicases superfamily AhyD4_04035 SM00490 helicase superfamily c-terminal domain AhyD4_04035 SM00847 Helicase associated domain (HA2) Add an annotation AhyD4_04065 SM00448 cheY-homologous receiver domain AhyD4_04065 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_04075 SM00014 Acid phosphatase homologues AhyD4_04170 SM00382 ATPases associated with a variety of cellular activities AhyD4_04180 SM00448 cheY-homologous receiver domain AhyD4_04195 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AhyD4_04235 SM00327 von Willebrand factor (vWF) type A domain AhyD4_04240 SM00260 Two component signalling adaptor domain AhyD4_04240 SM00448 cheY-homologous receiver domain AhyD4_04250 SM00382 ATPases associated with a variety of cellular activities AhyD4_04265 SM00052 Putative diguanylate phosphodiesterase AhyD4_04295 SM00450 Rhodanese Homology Domain AhyD4_04310 SM00382 ATPases associated with a variety of cellular activities AhyD4_04340 SM00052 Putative diguanylate phosphodiesterase AhyD4_04340 SM00091 PAS domain AhyD4_04340 SM00267 diguanylate cyclase AhyD4_04375 SM00479 AhyD4_04375 AhyD4_04410 SM00357 Cold shock protein domain AhyD4_04420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_04420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_04460 SM00495 Chitin-binding domain type 3 AhyD4_04460 SM00636 AhyD4_04460 AhyD4_04465 SM00028 Tetratricopeptide repeats AhyD4_04515 SM00382 ATPases associated with a variety of cellular activities AhyD4_04520 SM00382 ATPases associated with a variety of cellular activities AhyD4_04545 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AhyD4_04575 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_04585 SM01012 AhyD4_04585 AhyD4_04600 SM00382 ATPases associated with a variety of cellular activities AhyD4_04625 SM01057 Eukaryotic-type carbonic anhydrase AhyD4_04635 SM00477 DNA/RNA non-specific endonuclease AhyD4_04635 SM00892 DNA/RNA non-specific endonuclease AhyD4_04660 SM00563 Phosphate acyltransferases AhyD4_04720 SM00825 Beta-ketoacyl synthase AhyD4_04730 SM00822 AhyD4_04730 AhyD4_04735 SM00825 Beta-ketoacyl synthase AhyD4_04745 SM00852 Probable molybdopterin binding domain AhyD4_04770 SM00382 ATPases associated with a variety of cellular activities AhyD4_04810 SM00937 AhyD4_04810 AhyD4_04815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_04815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_04825 SM00870 AhyD4_04825 AhyD4_04835 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AhyD4_04865 SM01266 AhyD4_04865 AhyD4_04880 SM00829 Enoylreductase AhyD4_04905 SM00878 Biotin carboxylase C-terminal domain AhyD4_04930 SM00052 Putative diguanylate phosphodiesterase AhyD4_04930 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_04930 SM00091 PAS domain AhyD4_04930 SM00267 diguanylate cyclase AhyD4_05000 SM00020 Trypsin-like serine protease AhyD4_05025 SM00382 ATPases associated with a variety of cellular activities AhyD4_05045 SM00861 Transketolase, pyrimidine binding domain AhyD4_05080 SM01103 AhyD4_05080 AhyD4_05090 SM00382 ATPases associated with a variety of cellular activities AhyD4_05130 SM00316 Ribosomal protein S1-like RNA-binding domain AhyD4_05150 SM01387 AhyD4_05150 AhyD4_05155 SM00316 Ribosomal protein S1-like RNA-binding domain AhyD4_05155 SM00322 K homology RNA-binding domain AhyD4_05165 SM00267 diguanylate cyclase AhyD4_05195 SM00448 cheY-homologous receiver domain AhyD4_05195 SM00850 LytTr DNA-binding domain AhyD4_05205 SM00421 helix_turn_helix, Lux Regulon AhyD4_05205 SM00448 cheY-homologous receiver domain AhyD4_05210 SM00387 Histidine kinase-like ATPases AhyD4_05210 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_05225 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_05300 SM00422 helix_turn_helix, mercury resistance AhyD4_05330 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_05345 SM00936 Penicillin-binding protein 5, C-terminal domain AhyD4_05410 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_05410 SM01091 Transporter associated domain AhyD4_05425 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_05440 SM00357 Cold shock protein domain AhyD4_05445 SM00267 diguanylate cyclase AhyD4_05470 SM00267 diguanylate cyclase AhyD4_05495 SM00841 Elongation factor P, C-terminal AhyD4_05495 SM01185 AhyD4_05495 AhyD4_05505 SM01240 AhyD4_05505 AhyD4_05515 SM00387 Histidine kinase-like ATPases AhyD4_05515 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_05520 SM00448 cheY-homologous receiver domain AhyD4_05520 SM00862 Transcriptional regulatory protein, C terminal AhyD4_05530 SM00822 AhyD4_05530 AhyD4_05535 SM01236 AhyD4_05535 AhyD4_05595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_05595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_05635 SM00849 Metallo-beta-lactamase superfamily AhyD4_05645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_05645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_05660 SM00842 Cell division protein FtsA AhyD4_05680 SM00965 Secretin and TonB N terminus short domain AhyD4_05745 SM01150 AhyD4_05745 AhyD4_05760 SM00890 Domain of unknown function AhyD4_05770 SM00642 Alpha-amylase domain AhyD4_05780 SM01022 AhyD4_05780 AhyD4_05785 SM00100 Cyclic nucleotide-monophosphate binding domain AhyD4_05860 SM01400 AhyD4_05860 AhyD4_05885 SM00937 AhyD4_05885 AhyD4_05920 SM00986 Uracil DNA glycosylase superfamily AhyD4_05920 SM00987 UreE urease accessory protein, C-terminal domain AhyD4_05945 SM00460 Transglutaminase/protease-like homologues AhyD4_05970 SM00732 Likely ribonuclease with RNase H fold. AhyD4_05980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_06000 SM00731 SprT homologues. AhyD4_06010 SM00861 Transketolase, pyrimidine binding domain AhyD4_06020 SM00052 Putative diguanylate phosphodiesterase AhyD4_06055 SM00363 S4 RNA-binding domain AhyD4_06065 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_06075 SM00788 Adenylosuccinate synthetase AhyD4_06120 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AhyD4_06120 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AhyD4_06120 SM00493 AhyD4_06120 AhyD4_06135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_06155 SM00382 ATPases associated with a variety of cellular activities AhyD4_06160 SM00382 ATPases associated with a variety of cellular activities AhyD4_06180 SM00091 PAS domain AhyD4_06180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_06180 SM00387 Histidine kinase-like ATPases AhyD4_06180 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_06180 SM00448 cheY-homologous receiver domain AhyD4_06230 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_06230 SM00091 PAS domain AhyD4_06230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_06240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_06250 SM00852 Probable molybdopterin binding domain AhyD4_06260 SM00382 ATPases associated with a variety of cellular activities AhyD4_06275 SM00382 ATPases associated with a variety of cellular activities AhyD4_06275 SM00448 cheY-homologous receiver domain AhyD4_06280 SM00387 Histidine kinase-like ATPases AhyD4_06280 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_06325 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_06340 SM00387 Histidine kinase-like ATPases AhyD4_06340 SM00448 cheY-homologous receiver domain AhyD4_06345 SM00919 Malic enzyme, NAD binding domain AhyD4_06345 SM01274 AhyD4_06345 AhyD4_06445 SM00267 diguanylate cyclase AhyD4_06470 SM00382 ATPases associated with a variety of cellular activities AhyD4_06505 SM00382 ATPases associated with a variety of cellular activities AhyD4_06510 SM00382 ATPases associated with a variety of cellular activities AhyD4_06525 SM00448 cheY-homologous receiver domain AhyD4_06525 SM00862 Transcriptional regulatory protein, C terminal AhyD4_06590 SM00382 ATPases associated with a variety of cellular activities AhyD4_06615 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_06615 SM00387 Histidine kinase-like ATPases AhyD4_06615 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_06615 SM00448 cheY-homologous receiver domain AhyD4_06615 SM00918 Ligated ion channel L-glutamate- and glycine-binding site AhyD4_06665 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_06685 SM00528 Domain in histone-like proteins of HNS family AhyD4_06710 SM00382 ATPases associated with a variety of cellular activities AhyD4_06725 SM01131 AhyD4_06725 AhyD4_06755 SM00271 DnaJ molecular chaperone homology domain AhyD4_06775 SM00640 Glycosyl hydrolases family 32 AhyD4_06780 SM00354 helix_turn _helix lactose operon repressor AhyD4_06800 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AhyD4_06825 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_06825 SM00091 PAS domain AhyD4_06825 SM00267 diguanylate cyclase AhyD4_06885 SM00028 Tetratricopeptide repeats AhyD4_06885 SM00448 cheY-homologous receiver domain AhyD4_06970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_06970 SM00387 Histidine kinase-like ATPases AhyD4_06970 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_06970 SM00448 cheY-homologous receiver domain AhyD4_06985 SM00448 cheY-homologous receiver domain AhyD4_06985 SM00862 Transcriptional regulatory protein, C terminal AhyD4_07075 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_07155 SM00247 Beta/gamma crystallins AhyD4_07205 SM00481 DNA polymerase alpha chain like domain AhyD4_07225 SM00363 S4 RNA-binding domain AhyD4_07365 SM00487 DEAD-like helicases superfamily AhyD4_07365 SM00490 helicase superfamily c-terminal domain AhyD4_07390 SM00861 Transketolase, pyrimidine binding domain AhyD4_07400 SM00357 Cold shock protein domain AhyD4_07435 SM00420 helix_turn_helix, Deoxyribose operon repressor AhyD4_07435 SM01134 AhyD4_07435 AhyD4_07460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_07465 SM00363 S4 RNA-binding domain AhyD4_07495 SM00858 AhyD4_07495 AhyD4_07500 SM00260 Two component signalling adaptor domain AhyD4_07500 SM00448 cheY-homologous receiver domain AhyD4_07505 SM00138 Methyltransferase, chemotaxis proteins AhyD4_07550 SM00047 Lysozyme subfamily 2 AhyD4_07565 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_07565 SM00924 MgtE intracellular N domain AhyD4_07590 SM00382 ATPases associated with a variety of cellular activities AhyD4_07595 SM00091 PAS domain AhyD4_07595 SM00387 Histidine kinase-like ATPases AhyD4_07595 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_07600 SM00382 ATPases associated with a variety of cellular activities AhyD4_07600 SM00448 cheY-homologous receiver domain AhyD4_07665 SM00382 ATPases associated with a variety of cellular activities AhyD4_07675 SM01091 Transporter associated domain AhyD4_07705 SM00382 ATPases associated with a variety of cellular activities AhyD4_07715 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_07715 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AhyD4_07730 SM00387 Histidine kinase-like ATPases AhyD4_07735 SM00421 helix_turn_helix, Lux Regulon AhyD4_07735 SM00448 cheY-homologous receiver domain AhyD4_07760 SM00098 Alkaline phosphatase homologues AhyD4_07765 SM00098 Alkaline phosphatase homologues AhyD4_07790 SM00491 AhyD4_07790 AhyD4_07870 SM00873 B3/4 domain AhyD4_07875 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_07880 SM01130 AhyD4_07880 AhyD4_07890 SM00344 helix_turn_helix ASNC type AhyD4_07920 SM00528 Domain in histone-like proteins of HNS family AhyD4_07960 SM00382 ATPases associated with a variety of cellular activities AhyD4_07980 SM00421 helix_turn_helix, Lux Regulon AhyD4_07980 SM00448 cheY-homologous receiver domain AhyD4_07985 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AhyD4_07985 SM00465 GIY-YIG type nucleases (URI domain) AhyD4_08070 SM00382 ATPases associated with a variety of cellular activities AhyD4_08205 SM00840 AhyD4_08205 AhyD4_08220 SM00267 diguanylate cyclase AhyD4_08225 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_08230 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_08260 SM00899 AhyD4_08260 AhyD4_08285 SM00382 ATPases associated with a variety of cellular activities AhyD4_08295 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_08305 SM00382 ATPases associated with a variety of cellular activities AhyD4_08355 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AhyD4_08360 SM00851 MGS-like domain AhyD4_08360 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AhyD4_08365 SM00917 LeuA allosteric (dimerisation) domain AhyD4_08385 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AhyD4_08400 SM00487 DEAD-like helicases superfamily AhyD4_08400 SM00490 helicase superfamily c-terminal domain AhyD4_08410 SM01351 AhyD4_08410 AhyD4_08425 SM00422 helix_turn_helix, mercury resistance AhyD4_08440 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_08450 SM00382 ATPases associated with a variety of cellular activities AhyD4_08465 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_08470 SM00382 ATPases associated with a variety of cellular activities AhyD4_08490 SM00052 Putative diguanylate phosphodiesterase AhyD4_08490 SM00267 diguanylate cyclase AhyD4_08505 SM00327 von Willebrand factor (vWF) type A domain AhyD4_08540 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_08545 SM01217 AhyD4_08545 AhyD4_08570 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_08570 SM00871 Bacterial transcription activator, effector binding domain AhyD4_08585 SM00014 Acid phosphatase homologues AhyD4_08595 SM00859 Semialdehyde dehydrogenase, NAD binding domain AhyD4_08675 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_08680 SM00267 diguanylate cyclase AhyD4_08755 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_08755 SM01091 Transporter associated domain AhyD4_08780 SM00487 DEAD-like helicases superfamily AhyD4_08780 SM00490 helicase superfamily c-terminal domain AhyD4_08790 SM00479 AhyD4_08790 AhyD4_08795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_08810 SM00478 endonuclease III AhyD4_08810 SM00525 AhyD4_08810 AhyD4_08820 SM00900 AhyD4_08820 AhyD4_08855 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_08855 SM00091 PAS domain AhyD4_08855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_08890 SM00487 DEAD-like helicases superfamily AhyD4_08890 SM00490 helicase superfamily c-terminal domain AhyD4_08910 SM00448 cheY-homologous receiver domain AhyD4_08910 SM00850 LytTr DNA-binding domain AhyD4_08915 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AhyD4_08920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_08955 SM00382 ATPases associated with a variety of cellular activities AhyD4_08965 SM00382 ATPases associated with a variety of cellular activities AhyD4_08975 SM01005 Alanine racemase, C-terminal domain AhyD4_09010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_09010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_09250 SM00382 ATPases associated with a variety of cellular activities AhyD4_09370 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_09375 SM00873 B3/4 domain AhyD4_09380 SM01005 Alanine racemase, C-terminal domain AhyD4_09385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_09385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_09390 SM00052 Putative diguanylate phosphodiesterase AhyD4_09390 SM00448 cheY-homologous receiver domain AhyD4_09395 SM00448 cheY-homologous receiver domain AhyD4_09400 SM00138 Methyltransferase, chemotaxis proteins AhyD4_09405 SM00260 Two component signalling adaptor domain AhyD4_09410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_09415 SM00073 Histidine Phosphotransfer domain AhyD4_09415 SM00260 Two component signalling adaptor domain AhyD4_09415 SM00387 Histidine kinase-like ATPases AhyD4_09415 SM01231 AhyD4_09415 AhyD4_09425 SM00448 cheY-homologous receiver domain AhyD4_09475 SM00382 ATPases associated with a variety of cellular activities AhyD4_09480 SM00382 ATPases associated with a variety of cellular activities AhyD4_09575 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_09590 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AhyD4_09590 SM00382 ATPases associated with a variety of cellular activities AhyD4_09600 SM00493 AhyD4_09600 AhyD4_09605 SM00387 Histidine kinase-like ATPases AhyD4_09675 SM00823 Phosphopantetheine attachment site AhyD4_09680 SM00822 AhyD4_09680 AhyD4_09685 SM00823 Phosphopantetheine attachment site AhyD4_09705 SM00382 ATPases associated with a variety of cellular activities AhyD4_09750 SM00893 Electron transfer flavoprotein domain AhyD4_09755 SM00893 Electron transfer flavoprotein domain AhyD4_09775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_09775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_09780 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_09815 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_09815 SM01240 AhyD4_09815 AhyD4_09875 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_09885 SM00369 Leucine-rich repeats, typical (most populated) subfamily AhyD4_09900 SM00855 Phosphoglycerate mutase family AhyD4_09925 SM00487 DEAD-like helicases superfamily AhyD4_09925 SM00490 helicase superfamily c-terminal domain AhyD4_09925 SM00982 AhyD4_09925 AhyD4_09925 SM01058 CarD-like/TRCF domain AhyD4_09940 SM00382 ATPases associated with a variety of cellular activities AhyD4_09950 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_09970 SM00382 ATPases associated with a variety of cellular activities AhyD4_09970 SM00994 ClpX C4-type zinc finger AhyD4_09970 SM01086 C-terminal, D2-small domain, of ClpB protein AhyD4_09975 SM00382 ATPases associated with a variety of cellular activities AhyD4_09975 SM00464 Found in ATP-dependent protease La (LON) AhyD4_09990 SM00382 ATPases associated with a variety of cellular activities AhyD4_10005 SM00479 AhyD4_10005 AhyD4_10010 SM00100 Cyclic nucleotide-monophosphate binding domain AhyD4_10010 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_10075 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_10080 SM00422 helix_turn_helix, mercury resistance AhyD4_10090 SM00878 Biotin carboxylase C-terminal domain AhyD4_10090 SM01209 AhyD4_10090 AhyD4_10135 SM00822 AhyD4_10135 AhyD4_10160 SM00885 D5 N terminal like AhyD4_10170 SM00073 Histidine Phosphotransfer domain AhyD4_10190 SM00857 Resolvase, N terminal domain AhyD4_10245 SM00267 diguanylate cyclase AhyD4_10260 SM00052 Putative diguanylate phosphodiesterase AhyD4_10260 SM00267 diguanylate cyclase AhyD4_10270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_10275 SM00822 AhyD4_10275 AhyD4_10285 SM00518 AP endonuclease family 2 AhyD4_10315 SM00090 RIO-like kinase AhyD4_10325 SM00267 diguanylate cyclase AhyD4_10335 SM00486 DNA polymerase type-B family AhyD4_10415 SM00347 helix_turn_helix multiple antibiotic resistance protein AhyD4_10495 SM00422 helix_turn_helix, mercury resistance AhyD4_10505 SM00052 Putative diguanylate phosphodiesterase AhyD4_10535 SM00028 Tetratricopeptide repeats AhyD4_10540 SM00327 von Willebrand factor (vWF) type A domain AhyD4_10570 SM01322 AhyD4_10570 AhyD4_10595 SM00382 ATPases associated with a variety of cellular activities AhyD4_10655 SM01092 CO dehydrogenase flavoprotein C-terminal domain AhyD4_10660 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AhyD4_10680 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AhyD4_10685 SM01092 CO dehydrogenase flavoprotein C-terminal domain AhyD4_10695 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AhyD4_10730 SM00073 Histidine Phosphotransfer domain AhyD4_10730 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_10730 SM00091 PAS domain AhyD4_10730 SM00387 Histidine kinase-like ATPases AhyD4_10730 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_10730 SM00448 cheY-homologous receiver domain AhyD4_10735 SM00091 PAS domain AhyD4_10740 SM00448 cheY-homologous receiver domain AhyD4_10740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_10780 SM00491 AhyD4_10780 AhyD4_10805 SM00341 Helicase and RNase D C-terminal AhyD4_10805 SM00474 3'-5' exonuclease AhyD4_10810 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_10915 SM00857 Resolvase, N terminal domain AhyD4_10950 SM00382 ATPases associated with a variety of cellular activities AhyD4_11010 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_11090 SM01060 AhyD4_11090 AhyD4_11095 SM00248 ankyrin repeats AhyD4_11160 SM00528 Domain in histone-like proteins of HNS family AhyD4_11310 SM00421 helix_turn_helix, Lux Regulon AhyD4_11315 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_11320 SM00382 ATPases associated with a variety of cellular activities AhyD4_11320 SM00487 DEAD-like helicases superfamily AhyD4_11320 SM00490 helicase superfamily c-terminal domain AhyD4_11320 SM00847 Helicase associated domain (HA2) Add an annotation AhyD4_11335 SM00387 Histidine kinase-like ATPases AhyD4_11335 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_11335 SM00448 cheY-homologous receiver domain AhyD4_11340 SM00448 cheY-homologous receiver domain AhyD4_11340 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_11345 SM00849 Metallo-beta-lactamase superfamily AhyD4_11350 SM00450 Rhodanese Homology Domain AhyD4_11375 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AhyD4_11380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_11420 SM00316 Ribosomal protein S1-like RNA-binding domain AhyD4_11425 SM00363 S4 RNA-binding domain AhyD4_11475 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AhyD4_11480 SM00822 AhyD4_11480 AhyD4_11490 SM00825 Beta-ketoacyl synthase AhyD4_11510 SM00382 ATPases associated with a variety of cellular activities AhyD4_11600 SM00822 AhyD4_11600 AhyD4_11635 SM00382 ATPases associated with a variety of cellular activities AhyD4_11645 SM00981 AhyD4_11645 AhyD4_11675 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AhyD4_11675 SM00245 tail specific protease AhyD4_11680 SM00945 ProQ/FINO family AhyD4_11735 SM00100 Cyclic nucleotide-monophosphate binding domain AhyD4_11735 SM00419 helix_turn_helix, cAMP Regulatory protein AhyD4_11770 SM00382 ATPases associated with a variety of cellular activities AhyD4_11790 SM00354 helix_turn _helix lactose operon repressor AhyD4_11820 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_11820 SM00387 Histidine kinase-like ATPases AhyD4_11820 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_11820 SM00448 cheY-homologous receiver domain AhyD4_11825 SM00411 bacterial (prokaryotic) histone like domain AhyD4_11830 SM00873 B3/4 domain AhyD4_11830 SM00874 tRNA synthetase B5 domain AhyD4_11830 SM00896 Ferredoxin-fold anticodon binding domain AhyD4_11855 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AhyD4_11860 SM00671 Sel1-like repeats. AhyD4_11870 SM00434 DNA Topoisomerase IV AhyD4_11900 SM00925 MltA specific insert domain AhyD4_11940 SM00354 helix_turn _helix lactose operon repressor AhyD4_11965 SM00354 helix_turn _helix lactose operon repressor AhyD4_11980 SM00953 AhyD4_11980 AhyD4_11990 SM00487 DEAD-like helicases superfamily AhyD4_11990 SM00490 helicase superfamily c-terminal domain AhyD4_11995 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_12010 SM00463 Small MutS-related domain AhyD4_12020 SM00091 PAS domain AhyD4_12020 SM00267 diguanylate cyclase AhyD4_12025 SM00855 Phosphoglycerate mutase family AhyD4_12050 SM00782 PhnA Zinc-Ribbon AhyD4_12185 SM00642 Alpha-amylase domain AhyD4_12200 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_12220 SM01144 AhyD4_12220 AhyD4_12235 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AhyD4_12245 SM00487 DEAD-like helicases superfamily AhyD4_12245 SM00490 helicase superfamily c-terminal domain AhyD4_12270 SM01118 AhyD4_12270 AhyD4_12335 SM00382 ATPases associated with a variety of cellular activities AhyD4_12340 SM00382 ATPases associated with a variety of cellular activities AhyD4_12345 SM00387 Histidine kinase-like ATPases AhyD4_12345 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_12345 SM00448 cheY-homologous receiver domain AhyD4_12400 SM00487 DEAD-like helicases superfamily AhyD4_12400 SM00490 helicase superfamily c-terminal domain AhyD4_12405 SM00763 PrkA AAA domain AhyD4_12420 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_12445 SM00487 DEAD-like helicases superfamily AhyD4_12445 SM00490 helicase superfamily c-terminal domain AhyD4_12460 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_12480 SM00448 cheY-homologous receiver domain AhyD4_12485 SM00091 PAS domain AhyD4_12485 SM00387 Histidine kinase-like ATPases AhyD4_12495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_12495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_12495 SM01049 AhyD4_12495 AhyD4_12600 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_12630 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_12630 SM00871 Bacterial transcription activator, effector binding domain AhyD4_12635 SM00822 AhyD4_12635 AhyD4_12665 SM00859 Semialdehyde dehydrogenase, NAD binding domain AhyD4_12705 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_12705 SM00866 AhyD4_12705 AhyD4_12715 SM00382 ATPases associated with a variety of cellular activities AhyD4_12740 SM00881 CoA binding domain AhyD4_12755 SM00861 Transketolase, pyrimidine binding domain AhyD4_12795 SM00825 Beta-ketoacyl synthase AhyD4_12860 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_12870 SM00382 ATPases associated with a variety of cellular activities AhyD4_12885 SM01007 Class II Aldolase and Adducin N-terminal domain AhyD4_12950 SM00267 diguanylate cyclase AhyD4_12950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_12960 SM00091 PAS domain AhyD4_12960 SM00382 ATPases associated with a variety of cellular activities AhyD4_13005 SM00382 ATPases associated with a variety of cellular activities AhyD4_13025 SM00382 ATPases associated with a variety of cellular activities AhyD4_13030 SM00382 ATPases associated with a variety of cellular activities AhyD4_13060 SM00382 ATPases associated with a variety of cellular activities AhyD4_13070 SM00843 AhyD4_13070 AhyD4_13075 SM00344 helix_turn_helix ASNC type AhyD4_13085 SM00267 diguanylate cyclase AhyD4_13085 SM00448 cheY-homologous receiver domain AhyD4_13105 SM00316 Ribosomal protein S1-like RNA-binding domain AhyD4_13110 SM00382 ATPases associated with a variety of cellular activities AhyD4_13110 SM01086 C-terminal, D2-small domain, of ClpB protein AhyD4_13120 SM00357 Cold shock protein domain AhyD4_13195 SM00382 ATPases associated with a variety of cellular activities AhyD4_13200 SM00382 ATPases associated with a variety of cellular activities AhyD4_13200 SM01086 C-terminal, D2-small domain, of ClpB protein AhyD4_13250 SM00671 Sel1-like repeats. AhyD4_13295 SM01154 AhyD4_13295 AhyD4_13310 SM00528 Domain in histone-like proteins of HNS family AhyD4_13335 SM01144 AhyD4_13335 AhyD4_13345 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AhyD4_13350 SM00028 Tetratricopeptide repeats AhyD4_13360 SM00411 bacterial (prokaryotic) histone like domain AhyD4_13365 SM00316 Ribosomal protein S1-like RNA-binding domain AhyD4_13410 SM00052 Putative diguanylate phosphodiesterase AhyD4_13410 SM00267 diguanylate cyclase AhyD4_13425 SM00448 cheY-homologous receiver domain AhyD4_13430 SM00091 PAS domain AhyD4_13455 SM00360 RNA recognition motif AhyD4_13520 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AhyD4_13525 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_13525 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AhyD4_13565 SM01126 AhyD4_13565 AhyD4_13570 SM01211 AhyD4_13570 AhyD4_13575 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_13590 SM00564 beta-propeller repeat AhyD4_13610 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_13615 SM00028 Tetratricopeptide repeats AhyD4_13625 SM00562 AhyD4_13625 AhyD4_13650 SM00271 DnaJ molecular chaperone homology domain AhyD4_13700 SM00028 Tetratricopeptide repeats AhyD4_13705 SM00450 Rhodanese Homology Domain AhyD4_13720 SM01323 AhyD4_13720 AhyD4_13735 SM00116 Domain in cystathionine beta-synthase and other proteins. AhyD4_13775 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AhyD4_13840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_13840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_13905 SM00858 AhyD4_13905 AhyD4_13975 SM00981 AhyD4_13975 AhyD4_13990 SM01359 AhyD4_13990 AhyD4_13990 SM01360 AhyD4_13990 AhyD4_14025 SM00450 Rhodanese Homology Domain AhyD4_14030 SM00052 Putative diguanylate phosphodiesterase AhyD4_14030 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_14030 SM00091 PAS domain AhyD4_14030 SM00267 diguanylate cyclase AhyD4_14055 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_14055 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AhyD4_14060 SM00382 ATPases associated with a variety of cellular activities AhyD4_14130 SM00382 ATPases associated with a variety of cellular activities AhyD4_14205 SM00830 Chorismate mutase type II AhyD4_14225 SM00420 helix_turn_helix, Deoxyribose operon repressor AhyD4_14225 SM01134 AhyD4_14225 AhyD4_14290 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_14315 SM00871 Bacterial transcription activator, effector binding domain AhyD4_14340 SM00363 S4 RNA-binding domain AhyD4_14345 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AhyD4_14365 SM00487 DEAD-like helicases superfamily AhyD4_14365 SM00490 helicase superfamily c-terminal domain AhyD4_14370 SM00855 Phosphoglycerate mutase family AhyD4_14395 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_14395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_14420 SM00563 Phosphate acyltransferases AhyD4_14430 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AhyD4_14440 SM00867 YceI-like domain AhyD4_14460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_14460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_14470 SM00852 Probable molybdopterin binding domain AhyD4_14485 SM00382 ATPases associated with a variety of cellular activities AhyD4_14515 SM00852 Probable molybdopterin binding domain AhyD4_14540 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AhyD4_14555 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_14560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_14560 SM00387 Histidine kinase-like ATPases AhyD4_14565 SM00421 helix_turn_helix, Lux Regulon AhyD4_14565 SM00448 cheY-homologous receiver domain AhyD4_14570 SM00464 Found in ATP-dependent protease La (LON) AhyD4_14575 SM00387 Histidine kinase-like ATPases AhyD4_14575 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_14575 SM00448 cheY-homologous receiver domain AhyD4_14580 SM00897 FIST N domain AhyD4_14580 SM01204 AhyD4_14580 AhyD4_14590 SM00073 Histidine Phosphotransfer domain AhyD4_14610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_14620 SM00479 AhyD4_14620 AhyD4_14635 SM00849 Metallo-beta-lactamase superfamily AhyD4_14640 SM00257 Lysin motif AhyD4_14665 SM00354 helix_turn _helix lactose operon repressor AhyD4_14675 SM00052 Putative diguanylate phosphodiesterase AhyD4_14675 SM00267 diguanylate cyclase AhyD4_14750 SM00382 ATPases associated with a variety of cellular activities AhyD4_14765 SM00347 helix_turn_helix multiple antibiotic resistance protein AhyD4_14820 SM01081 Putative carbohydrate binding domain AhyD4_14900 SM00458 Ricin-type beta-trefoil AhyD4_14975 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_14985 SM00890 Domain of unknown function AhyD4_15000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_15025 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_15025 SM00876 Biotin and Thiamin Synthesis associated domain AhyD4_15035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_15095 SM01091 Transporter associated domain AhyD4_15120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_15120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_15190 SM00382 ATPases associated with a variety of cellular activities AhyD4_15210 SM00858 AhyD4_15210 AhyD4_15240 SM00859 Semialdehyde dehydrogenase, NAD binding domain AhyD4_15340 SM00959 Rho termination factor, N-terminal domain AhyD4_15490 SM00487 DEAD-like helicases superfamily AhyD4_15545 SM01329 AhyD4_15545 AhyD4_15550 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_15585 SM00354 helix_turn _helix lactose operon repressor AhyD4_15665 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AhyD4_15765 SM00382 ATPases associated with a variety of cellular activities AhyD4_15775 SM00260 Two component signalling adaptor domain AhyD4_15780 SM00260 Two component signalling adaptor domain AhyD4_15800 SM00448 cheY-homologous receiver domain AhyD4_15805 SM00073 Histidine Phosphotransfer domain AhyD4_15805 SM00260 Two component signalling adaptor domain AhyD4_15805 SM00387 Histidine kinase-like ATPases AhyD4_15805 SM01231 AhyD4_15805 AhyD4_15815 SM00448 cheY-homologous receiver domain AhyD4_15830 SM00382 ATPases associated with a variety of cellular activities AhyD4_15830 SM00962 SRP54-type protein, GTPase domain AhyD4_15890 SM00382 ATPases associated with a variety of cellular activities AhyD4_15920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_15925 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_15950 SM00382 ATPases associated with a variety of cellular activities AhyD4_15960 SM00382 ATPases associated with a variety of cellular activities AhyD4_15965 SM00448 cheY-homologous receiver domain AhyD4_15965 SM00862 Transcriptional regulatory protein, C terminal AhyD4_15970 SM00387 Histidine kinase-like ATPases AhyD4_16010 SM00481 DNA polymerase alpha chain like domain AhyD4_16040 SM00862 Transcriptional regulatory protein, C terminal AhyD4_16050 SM00877 AhyD4_16050 AhyD4_16055 SM00877 AhyD4_16055 AhyD4_16060 SM00877 AhyD4_16060 AhyD4_16090 SM00877 AhyD4_16090 AhyD4_16165 SM01130 AhyD4_16165 AhyD4_16175 SM01134 AhyD4_16175 AhyD4_16195 SM01007 Class II Aldolase and Adducin N-terminal domain AhyD4_16210 SM00382 ATPases associated with a variety of cellular activities AhyD4_16290 SM00155 Phospholipase D. Active site motifs. AhyD4_16310 SM00642 Alpha-amylase domain AhyD4_16355 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_16375 SM00267 diguanylate cyclase AhyD4_16390 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_16415 SM00919 Malic enzyme, NAD binding domain AhyD4_16415 SM01274 AhyD4_16415 AhyD4_16420 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_16435 SM00267 diguanylate cyclase AhyD4_16495 SM00382 ATPases associated with a variety of cellular activities AhyD4_16530 SM00387 Histidine kinase-like ATPases AhyD4_16530 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_16535 SM00448 cheY-homologous receiver domain AhyD4_16535 SM00862 Transcriptional regulatory protein, C terminal AhyD4_16555 SM00382 ATPases associated with a variety of cellular activities AhyD4_16565 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_16575 SM00448 cheY-homologous receiver domain AhyD4_16580 SM00387 Histidine kinase-like ATPases AhyD4_16585 SM00919 Malic enzyme, NAD binding domain AhyD4_16585 SM01274 AhyD4_16585 AhyD4_16595 SM00347 helix_turn_helix multiple antibiotic resistance protein AhyD4_16610 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_16640 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AhyD4_16640 SM00292 breast cancer carboxy-terminal domain AhyD4_16640 SM00532 Ligase N family AhyD4_16645 SM00771 ZipA, C-terminal domain (FtsZ-binding) AhyD4_16680 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_16705 SM00642 Alpha-amylase domain AhyD4_16715 SM00421 helix_turn_helix, Lux Regulon AhyD4_16715 SM00448 cheY-homologous receiver domain AhyD4_16740 SM00267 diguanylate cyclase AhyD4_16745 SM00977 TilS substrate C-terminal domain AhyD4_16760 SM00382 ATPases associated with a variety of cellular activities AhyD4_16780 SM00849 Metallo-beta-lactamase superfamily AhyD4_16815 SM00862 Transcriptional regulatory protein, C terminal AhyD4_16825 SM00481 DNA polymerase alpha chain like domain AhyD4_16855 SM00935 Outer membrane protein (OmpH-like) AhyD4_16865 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AhyD4_16910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_16990 SM00028 Tetratricopeptide repeats AhyD4_16995 SM00267 diguanylate cyclase AhyD4_17005 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AhyD4_17005 SM00475 5'-3' exonuclease AhyD4_17010 SM01329 AhyD4_17010 AhyD4_17040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_17040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_17080 SM00900 AhyD4_17080 AhyD4_17185 SM00421 helix_turn_helix, Lux Regulon AhyD4_17270 SM00422 helix_turn_helix, mercury resistance AhyD4_17305 SM00830 Chorismate mutase type II AhyD4_17345 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_17410 SM00487 DEAD-like helicases superfamily AhyD4_17410 SM00490 helicase superfamily c-terminal domain AhyD4_17430 SM00487 DEAD-like helicases superfamily AhyD4_17430 SM00490 helicase superfamily c-terminal domain AhyD4_17435 SM00487 DEAD-like helicases superfamily AhyD4_17455 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_17495 SM00100 Cyclic nucleotide-monophosphate binding domain AhyD4_17495 SM00419 helix_turn_helix, cAMP Regulatory protein AhyD4_17510 SM00382 ATPases associated with a variety of cellular activities AhyD4_17560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_17560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_17585 SM00463 Small MutS-related domain AhyD4_17630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_17635 SM00448 cheY-homologous receiver domain AhyD4_17645 SM00073 Histidine Phosphotransfer domain AhyD4_17645 SM00260 Two component signalling adaptor domain AhyD4_17645 SM00387 Histidine kinase-like ATPases AhyD4_17645 SM01231 AhyD4_17645 AhyD4_17650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_17650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_17655 SM00260 Two component signalling adaptor domain AhyD4_17660 SM00091 PAS domain AhyD4_17660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_17660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_17665 SM00138 Methyltransferase, chemotaxis proteins AhyD4_17675 SM00448 cheY-homologous receiver domain AhyD4_17710 SM00052 Putative diguanylate phosphodiesterase AhyD4_17725 SM01005 Alanine racemase, C-terminal domain AhyD4_17730 SM00382 ATPases associated with a variety of cellular activities AhyD4_17735 SM00978 AhyD4_17735 AhyD4_17740 SM00052 Putative diguanylate phosphodiesterase AhyD4_17765 SM00382 ATPases associated with a variety of cellular activities AhyD4_17765 SM00448 cheY-homologous receiver domain AhyD4_17775 SM00320 WD40 repeats AhyD4_17800 SM00260 Two component signalling adaptor domain AhyD4_17800 SM00448 cheY-homologous receiver domain AhyD4_17810 SM00267 diguanylate cyclase AhyD4_17820 SM00984 UDP binding domain AhyD4_17880 SM00100 Cyclic nucleotide-monophosphate binding domain AhyD4_17880 SM00419 helix_turn_helix, cAMP Regulatory protein AhyD4_17890 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AhyD4_17890 SM00495 Chitin-binding domain type 3 AhyD4_17900 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AhyD4_17900 SM00495 Chitin-binding domain type 3 AhyD4_17900 SM00636 AhyD4_17900 AhyD4_17905 SM00387 Histidine kinase-like ATPases AhyD4_17905 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_17905 SM00448 cheY-homologous receiver domain AhyD4_17915 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_17965 SM00382 ATPases associated with a variety of cellular activities AhyD4_17985 SM01133 AhyD4_17985 AhyD4_18140 SM00507 HNH nucleases AhyD4_18180 SM00382 ATPases associated with a variety of cellular activities AhyD4_18190 SM00382 ATPases associated with a variety of cellular activities AhyD4_18265 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_18310 SM00382 ATPases associated with a variety of cellular activities AhyD4_18325 SM00271 DnaJ molecular chaperone homology domain AhyD4_18355 SM00650 Ribosomal RNA adenine dimethylases AhyD4_18370 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_18380 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_18430 SM00244 prohibitin homologues AhyD4_18435 SM00244 prohibitin homologues AhyD4_18455 SM00853 MutL C terminal dimerisation domain AhyD4_18455 SM01340 AhyD4_18455 AhyD4_18460 SM00257 Lysin motif AhyD4_18460 SM00646 AhyD4_18460 AhyD4_18495 SM00382 ATPases associated with a variety of cellular activities AhyD4_18495 SM00930 AhyD4_18495 AhyD4_18510 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AhyD4_18515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_18515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_18520 SM00052 Putative diguanylate phosphodiesterase AhyD4_18520 SM00448 cheY-homologous receiver domain AhyD4_18525 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_18525 SM00073 Histidine Phosphotransfer domain AhyD4_18525 SM00091 PAS domain AhyD4_18525 SM00387 Histidine kinase-like ATPases AhyD4_18525 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_18525 SM00448 cheY-homologous receiver domain AhyD4_18535 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_18540 SM00073 Histidine Phosphotransfer domain AhyD4_18540 SM00091 PAS domain AhyD4_18540 SM00387 Histidine kinase-like ATPases AhyD4_18540 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_18540 SM00448 cheY-homologous receiver domain AhyD4_18585 SM01130 AhyD4_18585 AhyD4_18635 SM00014 Acid phosphatase homologues AhyD4_18645 SM00917 LeuA allosteric (dimerisation) domain AhyD4_18650 SM01329 AhyD4_18650 AhyD4_18685 SM00382 ATPases associated with a variety of cellular activities AhyD4_18690 SM00670 Large family of predicted nucleotide-binding domains AhyD4_18730 SM00487 DEAD-like helicases superfamily AhyD4_18730 SM00490 helicase superfamily c-terminal domain AhyD4_18745 SM00052 Putative diguanylate phosphodiesterase AhyD4_18745 SM00267 diguanylate cyclase AhyD4_18760 SM00883 Chaperonin 10 Kd subunit AhyD4_18835 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_18850 SM00422 helix_turn_helix, mercury resistance AhyD4_18855 SM00798 AICARFT/IMPCHase bienzyme AhyD4_18855 SM00851 MGS-like domain AhyD4_18860 SM01209 AhyD4_18860 AhyD4_18860 SM01210 AhyD4_18860 AhyD4_18875 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AhyD4_18875 SM00632 AhyD4_18875 AhyD4_18875 SM00642 Alpha-amylase domain AhyD4_18880 SM01126 AhyD4_18880 AhyD4_18895 SM00400 zinc finger AhyD4_18895 SM00493 AhyD4_18895 AhyD4_18895 SM00766 DNA primase DnaG DnaB-binding AhyD4_18915 SM00257 Lysin motif AhyD4_18955 SM01192 AhyD4_18955 AhyD4_18955 SM01193 AhyD4_18955 AhyD4_18970 SM00954 Region found in RelA / SpoT proteins AhyD4_18980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_18980 SM00387 Histidine kinase-like ATPases AhyD4_18980 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_18980 SM00448 cheY-homologous receiver domain AhyD4_18990 SM00644 AhyD4_18990 AhyD4_18995 SM00420 helix_turn_helix, Deoxyribose operon repressor AhyD4_18995 SM01134 AhyD4_18995 AhyD4_19060 SM00358 Double-stranded RNA binding motif AhyD4_19060 SM00535 Ribonuclease III family AhyD4_19160 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AhyD4_19185 SM00287 Bacterial SH3 domain homologues AhyD4_19195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_19195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_19245 SM00382 ATPases associated with a variety of cellular activities AhyD4_19250 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_19255 SM00382 ATPases associated with a variety of cellular activities AhyD4_19265 SM00448 cheY-homologous receiver domain AhyD4_19265 SM00862 Transcriptional regulatory protein, C terminal AhyD4_19270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_19270 SM00387 Histidine kinase-like ATPases AhyD4_19270 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_19360 SM00487 DEAD-like helicases superfamily AhyD4_19360 SM00490 helicase superfamily c-terminal domain AhyD4_19370 SM00849 Metallo-beta-lactamase superfamily AhyD4_19410 SM00347 helix_turn_helix multiple antibiotic resistance protein AhyD4_19425 SM00028 Tetratricopeptide repeats AhyD4_19425 SM00267 diguanylate cyclase AhyD4_19430 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_19430 SM00091 PAS domain AhyD4_19430 SM00267 diguanylate cyclase AhyD4_19435 SM00327 von Willebrand factor (vWF) type A domain AhyD4_19440 SM00382 ATPases associated with a variety of cellular activities AhyD4_19485 SM00829 Enoylreductase AhyD4_19550 SM00967 RNA 2'-O ribose methyltransferase substrate binding AhyD4_19555 SM00316 Ribosomal protein S1-like RNA-binding domain AhyD4_19555 SM00357 Cold shock protein domain AhyD4_19555 SM00955 AhyD4_19555 AhyD4_19560 SM00267 diguanylate cyclase AhyD4_19575 SM00938 Nitrogen regulatory protein P-II AhyD4_19660 SM00904 Riboflavin kinase AhyD4_19675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AhyD4_19705 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AhyD4_19715 SM00927 DNA mismatch repair enzyme MutH AhyD4_19745 SM00382 ATPases associated with a variety of cellular activities AhyD4_19745 SM00962 SRP54-type protein, GTPase domain AhyD4_19745 SM00963 SRP54-type protein, helical bundle domain AhyD4_19755 SM01091 Transporter associated domain AhyD4_19770 SM00671 Sel1-like repeats. AhyD4_19790 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_19790 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AhyD4_19795 SM00382 ATPases associated with a variety of cellular activities AhyD4_19810 SM00382 ATPases associated with a variety of cellular activities AhyD4_19825 SM00938 Nitrogen regulatory protein P-II AhyD4_19890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_19910 SM00487 DEAD-like helicases superfamily AhyD4_19910 SM00490 helicase superfamily c-terminal domain AhyD4_19990 SM00245 tail specific protease AhyD4_20020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AhyD4_20020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_20020 SM01049 AhyD4_20020 AhyD4_20035 SM00382 ATPases associated with a variety of cellular activities AhyD4_20065 SM01266 AhyD4_20065 AhyD4_20110 SM00859 Semialdehyde dehydrogenase, NAD binding domain AhyD4_20145 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_20180 SM00421 helix_turn_helix, Lux Regulon AhyD4_20230 SM00382 ATPases associated with a variety of cellular activities AhyD4_20245 SM00363 S4 RNA-binding domain AhyD4_20260 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_20260 SM00895 AhyD4_20260 AhyD4_20295 SM00421 helix_turn_helix, Lux Regulon AhyD4_20310 SM00357 Cold shock protein domain AhyD4_20310 SM00955 AhyD4_20310 AhyD4_20390 SM00487 DEAD-like helicases superfamily AhyD4_20390 SM00490 helicase superfamily c-terminal domain AhyD4_20440 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AhyD4_20450 SM00862 Transcriptional regulatory protein, C terminal AhyD4_20590 SM00642 Alpha-amylase domain AhyD4_20610 SM00344 helix_turn_helix ASNC type AhyD4_20630 SM00852 Probable molybdopterin binding domain AhyD4_20645 SM00382 ATPases associated with a variety of cellular activities AhyD4_20675 SM00100 Cyclic nucleotide-monophosphate binding domain AhyD4_20710 SM01219 AhyD4_20710 AhyD4_20820 SM00267 diguanylate cyclase AhyD4_20845 SM00876 Biotin and Thiamin Synthesis associated domain AhyD4_20875 SM00999 Aerolysin toxin AhyD4_20890 SM00448 cheY-homologous receiver domain AhyD4_20890 SM00862 Transcriptional regulatory protein, C terminal AhyD4_20895 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_20910 SM01018 B12 binding domain AhyD4_20990 SM00862 Transcriptional regulatory protein, C terminal AhyD4_21035 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_21040 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_21040 SM00091 PAS domain AhyD4_21050 SM00331 Sigma factor PP2C-like phosphatases AhyD4_21050 SM00387 Histidine kinase-like ATPases AhyD4_21055 SM00387 Histidine kinase-like ATPases AhyD4_21055 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_21055 SM00448 cheY-homologous receiver domain AhyD4_21060 SM00448 cheY-homologous receiver domain AhyD4_21060 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AhyD4_21120 SM00886 Stress responsive A/B Barrel Domain AhyD4_21130 SM00316 Ribosomal protein S1-like RNA-binding domain AhyD4_21200 SM00382 ATPases associated with a variety of cellular activities AhyD4_21215 SM00965 Secretin and TonB N terminus short domain AhyD4_21245 SM00052 Putative diguanylate phosphodiesterase AhyD4_21245 SM00267 diguanylate cyclase AhyD4_21250 SM00052 Putative diguanylate phosphodiesterase AhyD4_21280 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_21280 SM00866 AhyD4_21280 AhyD4_21285 SM00947 Carbonic anhydrase AhyD4_21300 SM00382 ATPases associated with a variety of cellular activities AhyD4_21305 SM00382 ATPases associated with a variety of cellular activities AhyD4_21305 SM00962 SRP54-type protein, GTPase domain AhyD4_21305 SM00963 SRP54-type protein, helical bundle domain AhyD4_21335 SM00155 Phospholipase D. Active site motifs. AhyD4_21340 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_21425 SM00822 AhyD4_21425 AhyD4_21485 SM00662 RNA polymerases D AhyD4_21490 SM00363 S4 RNA-binding domain AhyD4_21490 SM01390 AhyD4_21490 AhyD4_21550 SM01374 AhyD4_21550 AhyD4_21570 SM00322 K homology RNA-binding domain AhyD4_21585 SM01382 AhyD4_21585 AhyD4_21585 SM01383 AhyD4_21585 AhyD4_21605 SM01403 AhyD4_21605 AhyD4_21615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_21615 SM00387 Histidine kinase-like ATPases AhyD4_21615 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_21620 SM00448 cheY-homologous receiver domain AhyD4_21620 SM00862 Transcriptional regulatory protein, C terminal AhyD4_21630 SM00316 Ribosomal protein S1-like RNA-binding domain AhyD4_21630 SM00732 Likely ribonuclease with RNase H fold. AhyD4_21675 SM00450 Rhodanese Homology Domain AhyD4_21695 SM00354 helix_turn _helix lactose operon repressor AhyD4_21720 SM00155 Phospholipase D. Active site motifs. AhyD4_21725 SM00487 DEAD-like helicases superfamily AhyD4_21725 SM00490 helicase superfamily c-terminal domain AhyD4_21760 SM01230 AhyD4_21760 AhyD4_21770 SM00091 PAS domain AhyD4_21770 SM00387 Histidine kinase-like ATPases AhyD4_21770 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_21775 SM00382 ATPases associated with a variety of cellular activities AhyD4_21775 SM00448 cheY-homologous receiver domain AhyD4_21785 SM00729 Elongator protein 3, MiaB family, Radical SAM AhyD4_21835 SM01001 AIR carboxylase AhyD4_21855 SM00257 Lysin motif AhyD4_21910 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AhyD4_21910 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AhyD4_21930 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_21950 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_21960 SM00831 Cation transporter/ATPase, N-terminus AhyD4_22020 SM01321 AhyD4_22020 AhyD4_22035 SM00382 ATPases associated with a variety of cellular activities AhyD4_22055 SM00829 Enoylreductase AhyD4_22100 SM01038 Beta galactosidase small chain AhyD4_22105 SM00354 helix_turn _helix lactose operon repressor AhyD4_22145 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AhyD4_22145 SM00474 3'-5' exonuclease AhyD4_22145 SM00475 5'-3' exonuclease AhyD4_22145 SM00482 DNA polymerase A domain AhyD4_22165 SM00971 Serine acetyltransferase, N-terminal AhyD4_22175 SM00448 cheY-homologous receiver domain AhyD4_22175 SM00862 Transcriptional regulatory protein, C terminal AhyD4_22180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_22180 SM00387 Histidine kinase-like ATPases AhyD4_22180 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_22210 SM00563 Phosphate acyltransferases AhyD4_22235 SM00829 Enoylreductase AhyD4_22240 SM00354 helix_turn _helix lactose operon repressor AhyD4_22290 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AhyD4_22290 SM01232 AhyD4_22290 AhyD4_22360 SM00881 CoA binding domain AhyD4_22420 SM00448 cheY-homologous receiver domain AhyD4_22420 SM00862 Transcriptional regulatory protein, C terminal AhyD4_22425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AhyD4_22425 SM00387 Histidine kinase-like ATPases AhyD4_22425 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_22470 SM00836 DALR anticodon binding domain AhyD4_22525 SM00849 Metallo-beta-lactamase superfamily AhyD4_22530 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AhyD4_22530 SM00382 ATPases associated with a variety of cellular activities AhyD4_22535 SM00345 helix_turn_helix gluconate operon transcriptional repressor AhyD4_22535 SM00866 AhyD4_22535 AhyD4_22550 SM00354 helix_turn _helix lactose operon repressor AhyD4_22570 SM00382 ATPases associated with a variety of cellular activities AhyD4_22575 SM00382 ATPases associated with a variety of cellular activities AhyD4_22580 SM00342 helix_turn_helix, arabinose operon control protein AhyD4_22590 SM00450 Rhodanese Homology Domain AhyD4_22625 SM00357 Cold shock protein domain AhyD4_22625 SM00382 ATPases associated with a variety of cellular activities AhyD4_22625 SM00959 Rho termination factor, N-terminal domain AhyD4_22635 SM00487 DEAD-like helicases superfamily AhyD4_22635 SM00490 helicase superfamily c-terminal domain AhyD4_22660 SM00052 Putative diguanylate phosphodiesterase AhyD4_22660 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AhyD4_22660 SM00091 PAS domain AhyD4_22660 SM00267 diguanylate cyclase AhyD4_22670 SM01004 Delta-aminolevulinic acid dehydratase AhyD4_22760 SM00942 Primase C terminal 1 (PriCT-1) AhyD4_22800 SM00942 Primase C terminal 1 (PriCT-1) AhyD4_22855 SM00421 helix_turn_helix, Lux Regulon AhyD4_22865 SM00420 helix_turn_helix, Deoxyribose operon repressor AhyD4_22865 SM01134 AhyD4_22865 AhyD4_22870 SM00448 cheY-homologous receiver domain AhyD4_22870 SM00862 Transcriptional regulatory protein, C terminal AhyD4_22875 SM00387 Histidine kinase-like ATPases AhyD4_22875 SM00388 His Kinase A (phosphoacceptor) domain AhyD4_22900 SM00382 ATPases associated with a variety of cellular activities AhyD4_22940 SM00470 ParB-like nuclease domain AhyD4_22955 SM01228 AhyD4_22955 AhyD4_22970 SM00382 ATPases associated with a variety of cellular activities AhyD4_22975 SM00382 ATPases associated with a variety of cellular activities AhyD4_23010 SM00382 ATPases associated with a variety of cellular activities AhyD4_23020 SM00062 Bacterial periplasmic substrate-binding proteins AhyD4_23020 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AhyD4_23030 SM00487 DEAD-like helicases superfamily AhyD4_23045 SM00487 DEAD-like helicases superfamily AhyD4_23045 SM00490 helicase superfamily c-terminal domain AhyD4_23110 SM00530 Helix-turn-helix XRE-family like proteins AhyD4_23155 SM00778 Zinc-binding domain of primase-helicase AhyD4_23270 SM00327 von Willebrand factor (vWF) type A domain AhyD4_23330 SM00052 Putative diguanylate phosphodiesterase AhyD4_23450 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AhyD4_23450 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AhyD4_23450 SM00493 AhyD4_23450 AhyD4_23455 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains AhyD4_23490 SM00470 ParB-like nuclease domain AhyD4_23560 SM00382 ATPases associated with a variety of cellular activities AhyD4_23575 SM00411 bacterial (prokaryotic) histone like domain AhyD4_23580 SM00318 Staphylococcal nuclease homologues AhyD4_23790 SM00942 Primase C terminal 1 (PriCT-1)