locus-tag class description A9258_00005 PF00308 Bacterial dnaA protein A9258_00005 PF08299 Bacterial dnaA protein helix-turn-helix A9258_00005 PF11638 DnaA N-terminal domain A9258_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain A9258_00010 PF02767 DNA polymerase III beta subunit, central domain A9258_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain A9258_00015 PF02463 RecF/RecN/SMC N terminal domain A9258_00020 PF01751 Toprim domain A9258_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_00020 PF18053 DNA gyrase B subunit insert domain A9258_00020 PF00986 DNA gyrase B subunit, carboxyl terminus A9258_00020 PF00204 DNA gyrase B A9258_00030 PF13280 WYL domain A9258_00030 PF08279 HTH domain A9258_00035 PF00011 Hsp20/alpha crystallin family A9258_00040 PF00011 Hsp20/alpha crystallin family A9258_00045 PF00155 Aminotransferase class I and II A9258_00060 PF07690 Major Facilitator Superfamily A9258_00065 PF00486 Transcriptional regulatory protein, C terminal A9258_00065 PF00072 Response regulator receiver domain A9258_00070 PF00512 His Kinase A (phospho-acceptor) domain A9258_00070 PF13493 Domain of unknown function (DUF4118) A9258_00070 PF13492 GAF domain A9258_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain A9258_00075 PF02669 K+-transporting ATPase, c chain A9258_00085 PF03814 Potassium-transporting ATPase A subunit A9258_00100 PF13657 HipA N-terminal domain A9258_00100 PF07804 HipA-like C-terminal domain A9258_00140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A9258_00140 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_00145 PF00512 His Kinase A (phospho-acceptor) domain A9258_00145 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_00145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_00150 PF00873 AcrB/AcrD/AcrF family A9258_00155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_00160 PF00440 Bacterial regulatory proteins, tetR family A9258_00190 PF00224 Pyruvate kinase, barrel domain A9258_00190 PF02887 Pyruvate kinase, alpha/beta domain A9258_00195 PF07690 Major Facilitator Superfamily A9258_00205 PF00512 His Kinase A (phospho-acceptor) domain A9258_00205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_00205 PF00672 HAMP domain A9258_00210 PF02954 Bacterial regulatory protein, Fis family A9258_00210 PF14532 Sigma-54 interaction domain A9258_00210 PF00072 Response regulator receiver domain A9258_00225 PF12146 Serine aminopeptidase, S33 A9258_00230 PF00132 Bacterial transferase hexapeptide (six repeats) A9258_00235 PF00588 SpoU rRNA Methylase family A9258_00235 PF12105 SpoU, rRNA methylase, C-terminal A9258_00240 PF02824 TGS domain A9258_00240 PF04607 Region found in RelA / SpoT proteins A9258_00240 PF13291 ACT domain A9258_00245 PF01192 RNA polymerase Rpb6 A9258_00250 PF00625 Guanylate kinase A9258_00255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) A9258_00270 PF00892 EamA-like transporter family A9258_00285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_00285 PF03466 LysR substrate binding domain A9258_00290 PF00579 tRNA synthetases class I (W and Y) A9258_00295 PF00582 Universal stress protein family A9258_00300 PF12241 Trans-2-enoyl-CoA reductase catalytic region A9258_00300 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase A9258_00300 PF07055 Enoyl reductase FAD binding domain A9258_00305 PF00990 Diguanylate cyclase, GGDEF domain A9258_00310 PF00210 Ferritin-like domain A9258_00320 PF07690 Major Facilitator Superfamily A9258_00325 PF01810 LysE type translocator A9258_00340 PF16967 E-set like domain A9258_00340 PF15976 CS1-pili formation C-terminal A9258_00345 PF18649 EcpB C-terminal domain A9258_00350 PF16449 Fimbrillin MatB A9258_00355 PF00196 Bacterial regulatory proteins, luxR family A9258_00355 PF00072 Response regulator receiver domain A9258_00360 PF00512 His Kinase A (phospho-acceptor) domain A9258_00360 PF00989 PAS fold A9258_00360 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_00360 PF00072 Response regulator receiver domain A9258_00360 PF01627 Hpt domain A9258_00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_00370 PF06580 Histidine kinase A9258_00370 PF07694 5TMR of 5TMR-LYT A9258_00370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_00375 PF00072 Response regulator receiver domain A9258_00375 PF04397 LytTr DNA-binding domain A9258_00380 PF07690 Major Facilitator Superfamily A9258_00385 PF02222 ATP-grasp domain A9258_00385 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain A9258_00390 PF00731 AIR carboxylase A9258_00405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_00405 PF03466 LysR substrate binding domain A9258_00410 PF07715 TonB-dependent Receptor Plug Domain A9258_00410 PF00593 TonB dependent receptor A9258_00415 PF01177 Asp/Glu/Hydantoin racemase A9258_00450 PF00899 ThiF family A9258_00455 PF02657 Fe-S metabolism associated domain A9258_00460 PF00266 Aminotransferase class-V A9258_00465 PF13361 UvrD-like helicase C-terminal domain A9258_00465 PF00580 UvrD/REP helicase N-terminal domain A9258_00470 PF00563 EAL domain A9258_00470 PF00990 Diguanylate cyclase, GGDEF domain A9258_00470 PF03707 Bacterial signalling protein N terminal repeat A9258_00475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A9258_00480 PF08240 Alcohol dehydrogenase GroES-like domain A9258_00480 PF00107 Zinc-binding dehydrogenase A9258_00485 PF00155 Aminotransferase class I and II A9258_00490 PF08360 QacR-like protein, C-terminal region A9258_00490 PF00440 Bacterial regulatory proteins, tetR family A9258_00495 PF01370 NAD dependent epimerase/dehydratase family A9258_00510 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) A9258_00530 PF08340 Domain of unknown function (DUF1732) A9258_00530 PF03755 YicC-like family, N-terminal region A9258_00535 PF03725 3' exoribonuclease family, domain 2 A9258_00535 PF01138 3' exoribonuclease family, domain 1 A9258_00540 PF00156 Phosphoribosyl transferase domain A9258_00545 PF00403 Heavy-metal-associated domain A9258_00550 PF00376 MerR family regulatory protein A9258_00550 PF09278 MerR, DNA binding A9258_00555 PF00360 Phytochrome region A9258_00555 PF00563 EAL domain A9258_00555 PF00990 Diguanylate cyclase, GGDEF domain A9258_00555 PF01590 GAF domain A9258_00560 PF06288 Protein of unknown function (DUF1040) A9258_00565 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase A9258_00565 PF12801 4Fe-4S binding domain A9258_00565 PF13746 4Fe-4S dicluster domain A9258_00570 PF01636 Phosphotransferase enzyme family A9258_00575 PF01323 DSBA-like thioredoxin domain A9258_00580 PF00528 Binding-protein-dependent transport system inner membrane component A9258_00585 PF00005 ABC transporter A9258_00595 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain A9258_00595 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family A9258_00600 PF00857 Isochorismatase family A9258_00610 PF04463 Protein of unknown function (DUF523) A9258_00615 PF01553 Acyltransferase A9258_00620 PF01553 Acyltransferase A9258_00625 PF01078 Magnesium chelatase, subunit ChlI A9258_00625 PF13335 Magnesium chelatase, subunit ChlI C-terminal A9258_00630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A9258_00630 PF00205 Thiamine pyrophosphate enzyme, central domain A9258_00630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A9258_00640 PF01063 Amino-transferase class IV A9258_00645 PF00920 Dehydratase family A9258_00650 PF00291 Pyridoxal-phosphate dependent enzyme A9258_00650 PF00585 C-terminal regulatory domain of Threonine dehydratase A9258_00655 PF01389 OmpA-like transmembrane domain A9258_00655 PF00691 OmpA family A9258_00665 PF18074 Primosomal protein N C-terminal domain A9258_00665 PF17764 3′ DNA-binding domain (3′BD) A9258_00665 PF00271 Helicase conserved C-terminal domain A9258_00665 PF18319 PriA DNA helicase Cys-rich region (CRR) domain A9258_00665 PF00270 DEAD/DEAH box helicase A9258_00670 PF01197 Ribosomal protein L31 A9258_00675 PF11066 Protein of unknown function (DUF2867) A9258_00675 PF13460 NAD(P)H-binding A9258_00680 PF03949 Malic enzyme, NAD binding domain A9258_00680 PF00390 Malic enzyme, N-terminal domain A9258_00690 PF00512 His Kinase A (phospho-acceptor) domain A9258_00690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_00690 PF00672 HAMP domain A9258_00695 PF00486 Transcriptional regulatory protein, C terminal A9258_00695 PF00072 Response regulator receiver domain A9258_00700 PF05958 tRNA (Uracil-5-)-methyltransferase A9258_00715 PF00128 Alpha amylase, catalytic domain A9258_00715 PF02903 Alpha amylase, N-terminal ig-like domain A9258_00730 PF00012 Hsp70 protein A9258_00735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A9258_00735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A9258_00740 PF05981 CreA protein A9258_00755 PF01258 Prokaryotic dksA/traR C4-type zinc finger A9258_00760 PF00120 Glutamine synthetase, catalytic domain A9258_00765 PF00202 Aminotransferase class-III A9258_00770 PF13416 Bacterial extracellular solute-binding protein A9258_00775 PF13416 Bacterial extracellular solute-binding protein A9258_00780 PF00005 ABC transporter A9258_00780 PF08402 TOBE domain A9258_00785 PF00528 Binding-protein-dependent transport system inner membrane component A9258_00790 PF00528 Binding-protein-dependent transport system inner membrane component A9258_00795 PF03475 3-alpha domain A9258_00795 PF03473 MOSC domain A9258_00815 PF03061 Thioesterase superfamily A9258_00820 PF09382 RQC domain A9258_00820 PF00270 DEAD/DEAH box helicase A9258_00820 PF16124 RecQ zinc-binding A9258_00820 PF00570 HRDC domain A9258_00820 PF00271 Helicase conserved C-terminal domain A9258_00825 PF00034 Cytochrome c A9258_00830 PF02696 Uncharacterized ACR, YdiU/UPF0061 family A9258_00840 PF02592 Putative vitamin uptake transporter A9258_00845 PF03737 Aldolase/RraA A9258_00850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_00850 PF00672 HAMP domain A9258_00855 PF00571 CBS domain A9258_00855 PF01769 Divalent cation transporter A9258_00855 PF03448 MgtE intracellular N domain A9258_00860 PF10414 Sirohaem synthase dimerisation region A9258_00860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A9258_00860 PF14824 Sirohaem biosynthesis protein central A9258_00865 PF01226 Formate/nitrite transporter A9258_00870 PF13806 Rieske-like [2Fe-2S] domain A9258_00875 PF18267 Rubredoxin NAD+ reductase C-terminal domain A9258_00875 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_00875 PF04324 BFD-like [2Fe-2S] binding domain A9258_00875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A9258_00875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A9258_00880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_00880 PF03466 LysR substrate binding domain A9258_00885 PF07690 Major Facilitator Superfamily A9258_00890 PF10431 C-terminal, D2-small domain, of ClpB protein A9258_00890 PF00004 ATPase family associated with various cellular activities (AAA) A9258_00890 PF07724 AAA domain (Cdc48 subfamily) A9258_00895 PF00227 Proteasome subunit A9258_00905 PF00750 tRNA synthetases class I (R) A9258_00905 PF03485 Arginyl tRNA synthetase N terminal domain A9258_00905 PF05746 DALR anticodon binding domain A9258_00915 PF04542 Sigma-70 region 2 A9258_00915 PF04545 Sigma-70, region 4 A9258_00920 PF12973 ChrR Cupin-like domain A9258_00925 PF02673 Bacitracin resistance protein BacA A9258_00930 PF00248 Aldo/keto reductase family A9258_00935 PF01263 Aldose 1-epimerase A9258_00940 PF10509 Galactokinase galactose-binding signature A9258_00940 PF08544 GHMP kinases C terminal A9258_00940 PF00288 GHMP kinases N terminal domain A9258_00945 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain A9258_00945 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain A9258_00950 PF16363 GDP-mannose 4,6 dehydratase A9258_00955 PF00356 Bacterial regulatory proteins, lacI family A9258_00960 PF02929 Beta galactosidase small chain A9258_00960 PF02836 Glycosyl hydrolases family 2, TIM barrel domain A9258_00960 PF02837 Glycosyl hydrolases family 2, sugar binding domain A9258_00960 PF16353 Domain of unknown function(DUF4981) A9258_00960 PF00703 Glycosyl hydrolases family 2 A9258_00965 PF13407 Periplasmic binding protein domain A9258_00970 PF00005 ABC transporter A9258_00975 PF02653 Branched-chain amino acid transport system / permease component A9258_00980 PF00672 HAMP domain A9258_00980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_00980 PF02743 Cache domain A9258_01000 PF00696 Amino acid kinase family A9258_01005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A9258_01005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A9258_01010 PF03606 C4-dicarboxylate anaerobic carrier A9258_01015 PF01316 Arginine repressor, DNA binding domain A9258_01015 PF02863 Arginine repressor, C-terminal domain A9258_01020 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain A9258_01020 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain A9258_01025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A9258_01025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A9258_01040 PF02666 Phosphatidylserine decarboxylase A9258_01045 PF02743 Cache domain A9258_01045 PF00672 HAMP domain A9258_01045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_01050 PF08212 Lipocalin-like domain A9258_01055 PF06719 AraC-type transcriptional regulator N-terminus A9258_01055 PF12833 Helix-turn-helix domain A9258_01060 PF00465 Iron-containing alcohol dehydrogenase A9258_01065 PF05222 Alanine dehydrogenase/PNT, N-terminal domain A9258_01065 PF01262 Alanine dehydrogenase/PNT, C-terminal domain A9258_01065 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch A9258_01070 PF02233 NAD(P) transhydrogenase beta subunit A9258_01080 PF13309 HTH domain A9258_01080 PF08348 YheO-like PAS domain A9258_01085 PF03313 Serine dehydratase alpha chain A9258_01090 PF00375 Sodium:dicarboxylate symporter family A9258_01095 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_01095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A9258_01100 PF13525 Outer membrane lipoprotein A9258_01105 PF00849 RNA pseudouridylate synthase A9258_01105 PF01479 S4 domain A9258_01115 PF10431 C-terminal, D2-small domain, of ClpB protein A9258_01115 PF02861 Clp amino terminal domain, pathogenicity island component A9258_01115 PF17871 AAA lid domain A9258_01115 PF07724 AAA domain (Cdc48 subfamily) A9258_01115 PF00004 ATPase family associated with various cellular activities (AAA) A9258_01125 PF03590 Aspartate-ammonia ligase A9258_01130 PF01037 Lrp/AsnC ligand binding domain A9258_01140 PF10063 Uncharacterized integral membrane protein (DUF2301) A9258_01145 PF00571 CBS domain A9258_01145 PF00478 IMP dehydrogenase / GMP reductase domain A9258_01160 PF00512 His Kinase A (phospho-acceptor) domain A9258_01160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_01170 PF00158 Sigma-54 interaction domain A9258_01170 PF00072 Response regulator receiver domain A9258_01175 PF06496 Protein of unknown function (DUF1097) A9258_01180 PF00174 Oxidoreductase molybdopterin binding domain A9258_01185 PF01794 Ferric reductase like transmembrane component A9258_01200 PF00486 Transcriptional regulatory protein, C terminal A9258_01200 PF00072 Response regulator receiver domain A9258_01205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_01205 PF08918 PhoQ Sensor A9258_01215 PF18364 Molybdopterin oxidoreductase N-terminal domain A9258_01215 PF00384 Molybdopterin oxidoreductase A9258_01215 PF01568 Molydopterin dinucleotide binding domain A9258_01220 PF03264 NapC/NirT cytochrome c family, N-terminal region A9258_01225 PF01751 Toprim domain A9258_01225 PF01131 DNA topoisomerase A9258_01240 PF12852 Cupin A9258_01240 PF12833 Helix-turn-helix domain A9258_01245 PF02386 Cation transport protein A9258_01250 PF02254 TrkA-N domain A9258_01250 PF02080 TrkA-C domain A9258_01255 PF01565 FAD binding domain A9258_01255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain A9258_01260 PF02237 Biotin protein ligase C terminal domain A9258_01260 PF03099 Biotin/lipoate A/B protein ligase family A9258_01260 PF08279 HTH domain A9258_01265 PF00485 Phosphoribulokinase / Uridine kinase family A9258_01280 PF03144 Elongation factor Tu domain 2 A9258_01280 PF03143 Elongation factor Tu C-terminal domain A9258_01280 PF00009 Elongation factor Tu GTP binding domain A9258_01290 PF00584 SecE/Sec61-gamma subunits of protein translocation complex A9258_01295 PF00467 KOW motif A9258_01295 PF02357 Transcription termination factor nusG A9258_01300 PF00298 Ribosomal protein L11, RNA binding domain A9258_01300 PF03946 Ribosomal protein L11, N-terminal domain A9258_01305 PF00687 Ribosomal protein L1p/L10e family A9258_01310 PF00466 Ribosomal protein L10 A9258_01315 PF16320 Ribosomal protein L7/L12 dimerisation domain A9258_01315 PF00542 Ribosomal protein L7/L12 C-terminal domain A9258_01320 PF10385 RNA polymerase beta subunit external 1 domain A9258_01320 PF00562 RNA polymerase Rpb2, domain 6 A9258_01320 PF04560 RNA polymerase Rpb2, domain 7 A9258_01320 PF04561 RNA polymerase Rpb2, domain 2 A9258_01320 PF04563 RNA polymerase beta subunit A9258_01320 PF04565 RNA polymerase Rpb2, domain 3 A9258_01325 PF04983 RNA polymerase Rpb1, domain 3 A9258_01325 PF00623 RNA polymerase Rpb1, domain 2 A9258_01325 PF04997 RNA polymerase Rpb1, domain 1 A9258_01325 PF04998 RNA polymerase Rpb1, domain 5 A9258_01325 PF05000 RNA polymerase Rpb1, domain 4 A9258_01335 PF08348 YheO-like PAS domain A9258_01335 PF13309 HTH domain A9258_01340 PF01042 Endoribonuclease L-PSP A9258_01345 PF02635 DsrE/DsrF-like family A9258_01350 PF02635 DsrE/DsrF-like family A9258_01355 PF04077 DsrH like protein A9258_01365 PF00177 Ribosomal protein S7p/S5e A9258_01370 PF00679 Elongation factor G C-terminus A9258_01370 PF14492 Elongation Factor G, domain II A9258_01370 PF03764 Elongation factor G, domain IV A9258_01370 PF00009 Elongation factor Tu GTP binding domain A9258_01370 PF03144 Elongation factor Tu domain 2 A9258_01375 PF03144 Elongation factor Tu domain 2 A9258_01375 PF03143 Elongation factor Tu C-terminal domain A9258_01375 PF00009 Elongation factor Tu GTP binding domain A9258_01415 PF00860 Permease family A9258_01420 PF02733 Dak1 domain A9258_01425 PF02734 DAK2 domain A9258_01430 PF05524 PEP-utilising enzyme, N-terminal A9258_01430 PF00391 PEP-utilising enzyme, mobile domain A9258_01430 PF03610 PTS system fructose IIA component A9258_01430 PF00381 PTS HPr component phosphorylation site A9258_01435 PF00465 Iron-containing alcohol dehydrogenase A9258_01440 PF00158 Sigma-54 interaction domain A9258_01440 PF02954 Bacterial regulatory protein, Fis family A9258_01440 PF00989 PAS fold A9258_01445 PF03466 LysR substrate binding domain A9258_01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_01450 PF04371 Porphyromonas-type peptidyl-arginine deiminase A9258_01455 PF00106 short chain dehydrogenase A9258_01460 PF01594 AI-2E family transporter A9258_01465 PF00293 NUDIX domain A9258_01490 PF00199 Catalase A9258_01490 PF06628 Catalase-related immune-responsive A9258_01495 PF00583 Acetyltransferase (GNAT) family A9258_01515 PF17158 Membrane-associated sensor, integral membrane domain A9258_01515 PF00990 Diguanylate cyclase, GGDEF domain A9258_01525 PF00005 ABC transporter A9258_01525 PF08402 TOBE domain A9258_01535 PF00528 Binding-protein-dependent transport system inner membrane component A9258_01550 PF07702 UTRA domain A9258_01550 PF00392 Bacterial regulatory proteins, gntR family A9258_01560 PF03466 LysR substrate binding domain A9258_01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_01570 PF02678 Pirin A9258_01570 PF17954 Quercetinase C-terminal cupin domain A9258_01575 PF07681 DoxX A9258_01580 PF17946 RecC C-terminal domain A9258_01585 PF12705 PD-(D/E)XK nuclease superfamily A9258_01585 PF00580 UvrD/REP helicase N-terminal domain A9258_01585 PF13361 UvrD-like helicase C-terminal domain A9258_01590 PF13538 UvrD-like helicase C-terminal domain A9258_01600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A9258_01610 PF17151 Periplasmic sensor domain A9258_01610 PF00990 Diguanylate cyclase, GGDEF domain A9258_01635 PF00486 Transcriptional regulatory protein, C terminal A9258_01635 PF00072 Response regulator receiver domain A9258_01640 PF00512 His Kinase A (phospho-acceptor) domain A9258_01640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_01640 PF00672 HAMP domain A9258_01645 PF00360 Phytochrome region A9258_01645 PF00563 EAL domain A9258_01645 PF01590 GAF domain A9258_01645 PF00990 Diguanylate cyclase, GGDEF domain A9258_01650 PF00593 TonB dependent receptor A9258_01650 PF07715 TonB-dependent Receptor Plug Domain A9258_01655 PF00313 'Cold-shock' DNA-binding domain A9258_01665 PF16916 Dimerisation domain of Zinc Transporter A9258_01665 PF01545 Cation efflux family A9258_01675 PF00436 Single-strand binding protein family A9258_01680 PF00196 Bacterial regulatory proteins, luxR family A9258_01685 PF00005 ABC transporter A9258_01685 PF17755 UvrA DNA-binding domain A9258_01685 PF17760 UvrA interaction domain A9258_01695 PF03922 OmpW family A9258_01700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_01700 PF00672 HAMP domain A9258_01715 PF02219 Methylenetetrahydrofolate reductase A9258_01725 PF03594 Benzoate membrane transport protein A9258_01730 PF01381 Helix-turn-helix A9258_01730 PF07883 Cupin domain A9258_01760 PF04363 Protein of unknown function (DUF496) A9258_01770 PF04751 Protein of unknown function (DUF615) A9258_01775 PF01523 Putative modulator of DNA gyrase A9258_01780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A9258_01785 PF01722 BolA-like protein A9258_01795 PF05494 MlaC protein A9258_01800 PF02470 MlaD protein A9258_01805 PF02405 Permease MlaE A9258_01810 PF00005 ABC transporter A9258_01815 PF01380 SIS domain A9258_01815 PF00571 CBS domain A9258_01825 PF06835 Lipopolysaccharide-assembly, LptC-related A9258_01830 PF03968 OstA-like protein A9258_01835 PF00005 ABC transporter A9258_01835 PF12399 Branched-chain amino acid ATP-binding cassette transporter A9258_01840 PF00309 Sigma-54 factor, Activator interacting domain (AID) A9258_01840 PF04963 Sigma-54 factor, core binding domain A9258_01840 PF04552 Sigma-54, DNA binding domain A9258_01845 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein A9258_01850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A9258_01855 PF03668 P-loop ATPase protein family A9258_01860 PF00381 PTS HPr component phosphorylation site A9258_01865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A9258_01865 PF08279 HTH domain A9258_01865 PF00874 PRD domain A9258_01865 PF05043 Mga helix-turn-helix domain A9258_01870 PF07071 KDGP aldolase A9258_01875 PF03841 L-seryl-tRNA selenium transferase A9258_01880 PF01979 Amidohydrolase family A9258_01910 PF13180 PDZ domain A9258_01915 PF00595 PDZ domain A9258_01915 PF13180 PDZ domain A9258_01925 PF03969 AFG1-like ATPase A9258_01930 PF00572 Ribosomal protein L13 A9258_01935 PF00380 Ribosomal protein S9/S16 A9258_01940 PF00355 Rieske [2Fe-2S] domain A9258_01940 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal A9258_01945 PF00033 Cytochrome b/b6/petB A9258_01945 PF00032 Cytochrome b(C-terminal)/b6/petD A9258_01950 PF02167 Cytochrome C1 family A9258_01955 PF00043 Glutathione S-transferase, C-terminal domain A9258_01955 PF02798 Glutathione S-transferase, N-terminal domain A9258_01960 PF04386 Stringent starvation protein B A9258_01965 PF04972 BON domain A9258_01970 PF13580 SIS domain A9258_01975 PF02021 Uncharacterised protein family UPF0102 A9258_01980 PF04348 LppC putative lipoprotein A9258_01985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A9258_01995 PF02381 MraZ protein, putative antitoxin-like A9258_02000 PF01795 MraW methylase family A9258_02005 PF04999 Cell division protein FtsL A9258_02010 PF00905 Penicillin binding protein transpeptidase domain A9258_02010 PF03717 Penicillin-binding Protein dimerisation domain A9258_02015 PF08245 Mur ligase middle domain A9258_02015 PF02875 Mur ligase family, glutamate ligase domain A9258_02015 PF01225 Mur ligase family, catalytic domain A9258_02020 PF01225 Mur ligase family, catalytic domain A9258_02020 PF02875 Mur ligase family, glutamate ligase domain A9258_02020 PF08245 Mur ligase middle domain A9258_02025 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 A9258_02025 PF00953 Glycosyl transferase family 4 A9258_02030 PF02875 Mur ligase family, glutamate ligase domain A9258_02030 PF08245 Mur ligase middle domain A9258_02035 PF01098 Cell cycle protein A9258_02040 PF03033 Glycosyltransferase family 28 N-terminal domain A9258_02040 PF04101 Glycosyltransferase family 28 C-terminal domain A9258_02045 PF08245 Mur ligase middle domain A9258_02045 PF02875 Mur ligase family, glutamate ligase domain A9258_02045 PF01225 Mur ligase family, catalytic domain A9258_02050 PF03799 Cell division protein FtsQ A9258_02050 PF08478 POTRA domain, FtsQ-type A9258_02055 PF02491 SHS2 domain inserted in FTSA A9258_02060 PF00091 Tubulin/FtsZ family, GTPase domain A9258_02060 PF12327 FtsZ family, C-terminal domain A9258_02065 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase A9258_02075 PF02810 SEC-C motif A9258_02075 PF07517 SecA DEAD-like domain A9258_02075 PF07516 SecA Wing and Scaffold domain A9258_02075 PF01043 SecA preprotein cross-linking domain A9258_02085 PF00293 NUDIX domain A9258_02090 PF03884 DNA gyrase inhibitor YacG A9258_02095 PF07072 Cell division protein A9258_02100 PF01121 Dephospho-CoA kinase A9258_02105 PF06750 Bacterial Peptidase A24 N-terminal domain A9258_02105 PF01478 Type IV leader peptidase family A9258_02110 PF00482 Type II secretion system (T2SS), protein F A9258_02115 PF00437 Type II/IV secretion system protein A9258_02115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain A9258_02125 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain A9258_02125 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain A9258_02140 PF07729 FCD domain A9258_02140 PF00392 Bacterial regulatory proteins, gntR family A9258_02145 PF00456 Transketolase, thiamine diphosphate binding domain A9258_02145 PF17831 Pyruvate dehydrogenase E1 component middle domain A9258_02150 PF00364 Biotin-requiring enzyme A9258_02150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A9258_02150 PF02817 e3 binding domain A9258_02155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A9258_02155 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_02160 PF00563 EAL domain A9258_02160 PF00990 Diguanylate cyclase, GGDEF domain A9258_02160 PF13426 PAS domain A9258_02160 PF05231 MASE1 A9258_02160 PF08447 PAS fold A9258_02160 PF08448 PAS fold A9258_02170 PF00672 HAMP domain A9258_02170 PF12729 Four helix bundle sensory module for signal transduction A9258_02170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_02175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_02175 PF12729 Four helix bundle sensory module for signal transduction A9258_02175 PF00672 HAMP domain A9258_02180 PF01734 Patatin-like phospholipase A9258_02185 PF00330 Aconitase family (aconitate hydratase) A9258_02185 PF06434 Aconitate hydratase 2 N-terminus A9258_02185 PF11791 Aconitate B N-terminal domain A9258_02195 PF03466 LysR substrate binding domain A9258_02195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_02200 PF01810 LysE type translocator A9258_02210 PF02492 CobW/HypB/UreG, nucleotide-binding domain A9258_02210 PF07683 Cobalamin synthesis protein cobW C-terminal domain A9258_02215 PF07690 Major Facilitator Superfamily A9258_02225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) A9258_02230 PF02152 Dihydroneopterin aldolase A9258_02235 PF02660 Glycerol-3-phosphate acyltransferase A9258_02280 PF01584 CheW-like domain A9258_02280 PF00072 Response regulator receiver domain A9258_02285 PF00106 short chain dehydrogenase A9258_02290 PF17176 tRNA-binding domain A9258_02290 PF08351 Domain of unknown function (DUF1726) A9258_02290 PF13718 GNAT acetyltransferase 2 A9258_02290 PF05127 Helicase A9258_02305 PF00210 Ferritin-like domain A9258_02315 PF02142 MGS-like domain A9258_02330 PF17763 Glutaminase/Asparaginase C-terminal domain A9258_02330 PF00710 Asparaginase, N-terminal A9258_02345 PF00356 Bacterial regulatory proteins, lacI family A9258_02350 PF02378 Phosphotransferase system, EIIC A9258_02350 PF00367 phosphotransferase system, EIIB A9258_02355 PF00128 Alpha amylase, catalytic domain A9258_02355 PF11941 Domain of unknown function (DUF3459) A9258_02360 PF12464 Maltose acetyltransferase A9258_02360 PF14602 Hexapeptide repeat of succinyl-transferase A9258_02365 PF01037 Lrp/AsnC ligand binding domain A9258_02370 PF00892 EamA-like transporter family A9258_02380 PF00171 Aldehyde dehydrogenase family A9258_02385 PF00528 Binding-protein-dependent transport system inner membrane component A9258_02390 PF00528 Binding-protein-dependent transport system inner membrane component A9258_02395 PF00005 ABC transporter A9258_02395 PF08402 TOBE domain A9258_02400 PF13416 Bacterial extracellular solute-binding protein A9258_02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_02405 PF03466 LysR substrate binding domain A9258_02410 PF03553 Na+/H+ antiporter family A9258_02450 PF00534 Glycosyl transferases group 1 A9258_02450 PF08323 Starch synthase catalytic domain A9258_02455 PF00483 Nucleotidyl transferase A9258_02460 PF08468 Methyltransferase small domain N-terminal A9258_02460 PF05175 Methyltransferase small domain A9258_02465 PF00701 Dihydrodipicolinate synthetase family A9258_02470 PF00360 Phytochrome region A9258_02470 PF00990 Diguanylate cyclase, GGDEF domain A9258_02470 PF00563 EAL domain A9258_02470 PF01590 GAF domain A9258_02480 PF13419 Haloacid dehalogenase-like hydrolase A9258_02485 PF17209 Hfq protein A9258_02490 PF04403 Paraquat-inducible protein A A9258_02495 PF02470 MlaD protein A9258_02500 PF03886 ABC-type transport auxiliary lipoprotein component A9258_02505 PF00691 OmpA family A9258_02505 PF01389 OmpA-like transmembrane domain A9258_02515 PF00657 GDSL-like Lipase/Acylhydrolase A9258_02520 PF04076 Bacterial OB fold (BOF) protein A9258_02525 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain A9258_02525 PF01464 Transglycosylase SLT domain A9258_02530 PF04362 Bacterial Fe(2+) trafficking A9258_02535 PF00730 HhH-GPD superfamily base excision DNA repair protein A9258_02535 PF10576 Iron-sulfur binding domain of endonuclease III A9258_02535 PF14815 NUDIX domain A9258_02535 PF00633 Helix-hairpin-helix motif A9258_02540 PF16537 Type II secretion system protein B A9258_02545 PF01471 Putative peptidoglycan binding domain A9258_02545 PF13401 AAA domain A9258_02555 PF12627 Probable RNA and SrmB- binding site of polymerase A A9258_02555 PF01966 HD domain A9258_02555 PF01743 Poly A polymerase head domain A9258_02570 PF04172 LrgB-like family A9258_02575 PF03788 LrgA family A9258_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_02580 PF03466 LysR substrate binding domain A9258_02585 PF00155 Aminotransferase class I and II A9258_02585 PF00392 Bacterial regulatory proteins, gntR family A9258_02605 PF04073 Aminoacyl-tRNA editing domain A9258_02610 PF01384 Phosphate transporter family A9258_02615 PF01865 Protein of unknown function DUF47 A9258_02630 PF03279 Bacterial lipid A biosynthesis acyltransferase A9258_02635 PF00294 pfkB family carbohydrate kinase A9258_02635 PF01467 Cytidylyltransferase-like A9258_02640 PF02321 Outer membrane efflux protein A9258_02645 PF00293 NUDIX domain A9258_02650 PF06853 Protein of unknown function (DUF1249) A9258_02655 PF00149 Calcineurin-like phosphoesterase A9258_02660 PF05728 Uncharacterised protein family (UPF0227) A9258_02665 PF00293 NUDIX domain A9258_02675 PF07869 Protein of unknown function (DUF1656) A9258_02680 PF00529 HlyD membrane-fusion protein of T1SS A9258_02680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_02685 PF04632 Fusaric acid resistance protein family A9258_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_02690 PF01751 Toprim domain A9258_02690 PF00986 DNA gyrase B subunit, carboxyl terminus A9258_02690 PF00204 DNA gyrase B A9258_02695 PF00521 DNA gyrase/topoisomerase IV, subunit A A9258_02695 PF03989 DNA gyrase C-terminal domain, beta-propeller A9258_02730 PF00684 DnaJ central domain A9258_02730 PF01556 DnaJ C terminal domain A9258_02730 PF00226 DnaJ domain A9258_02735 PF00578 AhpC/TSA family A9258_02760 PF01553 Acyltransferase A9258_02765 PF04012 PspA/IM30 family A9258_02780 PF01541 GIY-YIG catalytic domain A9258_02790 PF00892 EamA-like transporter family A9258_02795 PF03167 Uracil DNA glycosylase superfamily A9258_02800 PF00892 EamA-like transporter family A9258_02810 PF00950 ABC 3 transport family A9258_02815 PF00005 ABC transporter A9258_02820 PF01297 Zinc-uptake complex component A periplasmic A9258_02840 PF08525 Opacity-associated protein A N-terminal motif A9258_02840 PF01476 LysM domain A9258_02840 PF01551 Peptidase family M23 A9258_02845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A9258_02850 PF04222 Protein of unknown function (DUF416) A9258_02865 PF02028 BCCT, betaine/carnitine/choline family transporter A9258_02870 PF05192 MutS domain III A9258_02870 PF01624 MutS domain I A9258_02870 PF00488 MutS domain V A9258_02870 PF05188 MutS domain II A9258_02870 PF05190 MutS family domain IV A9258_02875 PF13356 Arm DNA-binding domain A9258_02875 PF00589 Phage integrase family A9258_02895 PF02464 Competence-damaged protein A9258_02900 PF00154 recA bacterial DNA recombination protein A9258_02905 PF02631 RecX family A9258_02910 PF01411 tRNA synthetases class II (A) A9258_02910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A9258_02910 PF02272 DHHA1 domain A9258_02915 PF13840 ACT domain A9258_02915 PF01842 ACT domain A9258_02915 PF00696 Amino acid kinase family A9258_02920 PF02599 Global regulator protein family A9258_02955 PF00768 D-alanyl-D-alanine carboxypeptidase A9258_02960 PF09335 SNARE associated Golgi protein A9258_02965 PF03471 Transporter associated domain A9258_02965 PF01595 Cyclin M transmembrane N-terminal domain A9258_02965 PF00571 CBS domain A9258_02970 PF00133 tRNA synthetases class I (I, L, M and V) A9258_02970 PF10458 Valyl tRNA synthetase tRNA binding arm A9258_02970 PF08264 Anticodon-binding domain of tRNA A9258_02975 PF04364 DNA polymerase III chi subunit, HolC A9258_02980 PF00883 Cytosol aminopeptidase family, catalytic domain A9258_02980 PF02789 Cytosol aminopeptidase family, N-terminal domain A9258_02985 PF03739 Lipopolysaccharide export system permease LptF/LptG A9258_02990 PF03739 Lipopolysaccharide export system permease LptF/LptG A9258_03005 PF13356 Arm DNA-binding domain A9258_03005 PF00589 Phage integrase family A9258_03020 PF10548 P22AR C-terminal domain A9258_03020 PF08346 AntA/AntB antirepressor A9258_03045 PF00909 Ammonium Transporter Family A9258_03050 PF01938 TRAM domain A9258_03050 PF05958 tRNA (Uracil-5-)-methyltransferase A9258_03055 PF07963 Prokaryotic N-terminal methylation motif A9258_03055 PF00114 Pilin (bacterial filament) A9258_03060 PF01026 TatD related DNase A9258_03065 PF07670 Nucleoside recognition A9258_03065 PF01773 Na+ dependent nucleoside transporter N-terminus A9258_03065 PF07662 Na+ dependent nucleoside transporter C-terminus A9258_03075 PF01791 DeoC/LacD family aldolase A9258_03080 PF02885 Glycosyl transferase family, helical bundle domain A9258_03080 PF00591 Glycosyl transferase family, a/b domain A9258_03080 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain A9258_03085 PF01676 Metalloenzyme superfamily A9258_03090 PF01048 Phosphorylase superfamily A9258_03095 PF13426 PAS domain A9258_03095 PF08447 PAS fold A9258_03095 PF00563 EAL domain A9258_03095 PF05231 MASE1 A9258_03095 PF00990 Diguanylate cyclase, GGDEF domain A9258_03095 PF08448 PAS fold A9258_03105 PF18429 Domain of unknown function (DUF5609) A9258_03120 PF18073 Rubredoxin metal binding domain A9258_03125 PF07238 PilZ domain A9258_03130 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ A9258_03135 PF00216 Bacterial DNA-binding protein A9258_03145 PF01207 Dihydrouridine synthase (Dus) A9258_03165 PF05525 Branched-chain amino acid transport protein A9258_03170 PF05525 Branched-chain amino acid transport protein A9258_03175 PF05175 Methyltransferase small domain A9258_03180 PF00270 DEAD/DEAH box helicase A9258_03180 PF00271 Helicase conserved C-terminal domain A9258_03185 PF03883 Peroxide stress protein YaaA A9258_03190 PF00437 Type II/IV secretion system protein A9258_03195 PF00437 Type II/IV secretion system protein A9258_03200 PF01168 Alanine racemase, N-terminal domain A9258_03205 PF14748 Pyrroline-5-carboxylate reductase dimerisation A9258_03205 PF03807 NADP oxidoreductase coenzyme F420-dependent A9258_03210 PF02325 YGGT family A9258_03215 PF02594 Uncharacterised ACR, YggU family COG1872 A9258_03230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_03240 PF00132 Bacterial transferase hexapeptide (six repeats) A9258_03245 PF10952 Protein of unknown function (DUF2753) A9258_03250 PF00378 Enoyl-CoA hydratase/isomerase A9258_03265 PF00106 short chain dehydrogenase A9258_03270 PF03129 Anticodon binding domain A9258_03270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A9258_03270 PF04073 Aminoacyl-tRNA editing domain A9258_03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_03275 PF00672 HAMP domain A9258_03280 PF07499 RuvA, C-terminal domain A9258_03280 PF01330 RuvA N terminal domain A9258_03285 PF17864 RuvB AAA lid domain A9258_03285 PF05491 RuvB C-terminal winged helix domain A9258_03285 PF05496 Holliday junction DNA helicase RuvB P-loop domain A9258_03290 PF01654 Cytochrome bd terminal oxidase subunit I A9258_03295 PF02322 Cytochrome bd terminal oxidase subunit II A9258_03300 PF08173 Membrane bound YbgT-like protein A9258_03305 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) A9258_03310 PF03061 Thioesterase superfamily A9258_03315 PF01618 MotA/TolQ/ExbB proton channel family A9258_03320 PF02472 Biopolymer transport protein ExbD/TolR A9258_03330 PF04052 TolB amino-terminal domain A9258_03330 PF07676 WD40-like Beta Propeller Repeat A9258_03335 PF00691 OmpA family A9258_03340 PF13174 Tetratricopeptide repeat A9258_03340 PF16331 TolA binding protein trimerisation A9258_03375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_03375 PF00672 HAMP domain A9258_03380 PF02445 Quinolinate synthetase A protein A9258_03385 PF01263 Aldose 1-epimerase A9258_03390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A9258_03390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A9258_03395 PF02446 4-alpha-glucanotransferase A9258_03400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A9258_03400 PF02806 Alpha amylase, C-terminal all-beta domain A9258_03400 PF00128 Alpha amylase, catalytic domain A9258_03405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A9258_03405 PF00128 Alpha amylase, catalytic domain A9258_03410 PF01641 SelR domain A9258_03420 PF00293 NUDIX domain A9258_03425 PF00107 Zinc-binding dehydrogenase A9258_03425 PF16884 N-terminal domain of oxidoreductase A9258_03430 PF02566 OsmC-like protein A9258_03435 PF01047 MarR family A9258_03450 PF01037 Lrp/AsnC ligand binding domain A9258_03460 PF07690 Major Facilitator Superfamily A9258_03480 PF00209 Sodium:neurotransmitter symporter family A9258_03490 PF00209 Sodium:neurotransmitter symporter family A9258_03515 PF00392 Bacterial regulatory proteins, gntR family A9258_03515 PF00155 Aminotransferase class I and II A9258_03525 PF01810 LysE type translocator A9258_03530 PF01177 Asp/Glu/Hydantoin racemase A9258_03535 PF07732 Multicopper oxidase A9258_03535 PF00394 Multicopper oxidase A9258_03535 PF07731 Multicopper oxidase A9258_03545 PF04074 YhcH/YjgK/YiaL A9258_03550 PF00871 Acetokinase family A9258_03555 PF00924 Mechanosensitive ion channel A9258_03560 PF03734 L,D-transpeptidase catalytic domain A9258_03560 PF17969 L,D-transpeptidase C-terminal domain A9258_03565 PF00474 Sodium:solute symporter family A9258_03570 PF00561 alpha/beta hydrolase fold A9258_03595 PF02525 Flavodoxin-like fold A9258_03600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_03600 PF03466 LysR substrate binding domain A9258_03605 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ A9258_03615 PF12848 ABC transporter A9258_03615 PF00005 ABC transporter A9258_03620 PF01380 SIS domain A9258_03620 PF00571 CBS domain A9258_03625 PF01957 NfeD-like C-terminal, partner-binding A9258_03630 PF16200 C-terminal region of band_7 A9258_03630 PF01145 SPFH domain / Band 7 family A9258_03635 PF14824 Sirohaem biosynthesis protein central A9258_03635 PF10414 Sirohaem synthase dimerisation region A9258_03635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A9258_03640 PF01507 Phosphoadenosine phosphosulfate reductase family A9258_03645 PF00009 Elongation factor Tu GTP binding domain A9258_03650 PF03600 Citrate transporter A9258_03650 PF02080 TrkA-C domain A9258_03675 PF08447 PAS fold A9258_03675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_03695 PF00005 ABC transporter A9258_03710 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) A9258_03725 PF00719 Inorganic pyrophosphatase A9258_03730 PF01225 Mur ligase family, catalytic domain A9258_03730 PF08245 Mur ligase middle domain A9258_03730 PF02875 Mur ligase family, glutamate ligase domain A9258_03735 PF02441 Flavoprotein A9258_03740 PF00440 Bacterial regulatory proteins, tetR family A9258_03745 PF00156 Phosphoribosyl transferase domain A9258_03750 PF00005 ABC transporter A9258_03755 PF01061 ABC-2 type transporter A9258_03760 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component A9258_03765 PF01869 BadF/BadG/BcrA/BcrD ATPase family A9258_03785 PF02569 Pantoate-beta-alanine ligase A9258_03790 PF02548 Ketopantoate hydroxymethyltransferase A9258_03795 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) A9258_03800 PF12627 Probable RNA and SrmB- binding site of polymerase A A9258_03800 PF12626 Polymerase A arginine-rich C-terminus A9258_03800 PF01743 Poly A polymerase head domain A9258_03805 PF00749 tRNA synthetases class I (E and Q), catalytic domain A9258_03810 PF01258 Prokaryotic dksA/traR C4-type zinc finger A9258_03815 PF17746 SfsA N-terminal OB domain A9258_03815 PF03749 Sugar fermentation stimulation protein RE domain A9258_03825 PF00271 Helicase conserved C-terminal domain A9258_03825 PF04408 Helicase associated domain (HA2) A9258_03825 PF00270 DEAD/DEAH box helicase A9258_03825 PF08482 ATP-dependent helicase C-terminal A9258_03830 PF00912 Transglycosylase A9258_03830 PF00905 Penicillin binding protein transpeptidase domain A9258_03830 PF14814 Bifunctional transglycosylase second domain A9258_03835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A9258_03840 PF00893 Small Multidrug Resistance protein A9258_03845 PF00893 Small Multidrug Resistance protein A9258_03855 PF11849 Domain of unknown function (DUF3369) A9258_03865 PF01569 PAP2 superfamily A9258_03880 PF00202 Aminotransferase class-III A9258_03885 PF00654 Voltage gated chloride channel A9258_03895 PF01521 Iron-sulphur cluster biosynthesis A9258_03920 PF01810 LysE type translocator A9258_03925 PF02954 Bacterial regulatory protein, Fis family A9258_03930 PF01207 Dihydrouridine synthase (Dus) A9258_03935 PF02321 Outer membrane efflux protein A9258_03940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_03970 PF00072 Response regulator receiver domain A9258_03975 PF00854 POT family A9258_03980 PF00483 Nucleotidyl transferase A9258_03990 PF00459 Inositol monophosphatase family A9258_03995 PF03795 YCII-related domain A9258_04000 PF04279 Intracellular septation protein A A9258_04005 PF00282 Pyridoxal-dependent decarboxylase conserved domain A9258_04010 PF03006 Haemolysin-III related A9258_04015 PF02080 TrkA-C domain A9258_04015 PF06826 Predicted Permease Membrane Region A9258_04025 PF01584 CheW-like domain A9258_04025 PF00072 Response regulator receiver domain A9258_04030 PF13472 GDSL-like Lipase/Acylhydrolase family A9258_04035 PF00005 ABC transporter A9258_04045 PF01370 NAD dependent epimerase/dehydratase family A9258_04045 PF08338 Domain of unknown function (DUF1731) A9258_04050 PF12792 CSS motif domain associated with EAL A9258_04050 PF00563 EAL domain A9258_04055 PF00155 Aminotransferase class I and II A9258_04060 PF04389 Peptidase family M28 A9258_04060 PF01483 Proprotein convertase P-domain A9258_04065 PF02390 Putative methyltransferase A9258_04070 PF04320 Protein with unknown function (DUF469) A9258_04075 PF04960 Glutaminase A9258_04080 PF00581 Rhodanese-like domain A9258_04085 PF05922 Peptidase inhibitor I9 A9258_04085 PF00082 Subtilase family A9258_04090 PF06004 Bacterial protein of unknown function (DUF903) A9258_04095 PF00005 ABC transporter A9258_04095 PF00664 ABC transporter transmembrane region A9258_04100 PF00561 alpha/beta hydrolase fold A9258_04115 PF05547 Immune inhibitor A peptidase M6 A9258_04115 PF00801 PKD domain A9258_04120 PF06877 Regulator of ribonuclease activity B A9258_04125 PF03707 Bacterial signalling protein N terminal repeat A9258_04125 PF00563 EAL domain A9258_04125 PF00990 Diguanylate cyclase, GGDEF domain A9258_04145 PF09905 DNA-binding protein VF530 A9258_04150 PF02666 Phosphatidylserine decarboxylase A9258_04155 PF03193 RsgA GTPase A9258_04160 PF00929 Exonuclease A9258_04200 PF00313 'Cold-shock' DNA-binding domain A9258_04210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_04210 PF00672 HAMP domain A9258_04215 PF00749 tRNA synthetases class I (E and Q), catalytic domain A9258_04220 PF00749 tRNA synthetases class I (E and Q), catalytic domain A9258_04225 PF00749 tRNA synthetases class I (E and Q), catalytic domain A9258_04255 PF06483 Chitinase C A9258_04255 PF00704 Glycosyl hydrolases family 18 A9258_04270 PF02472 Biopolymer transport protein ExbD/TolR A9258_04275 PF01618 MotA/TolQ/ExbB proton channel family A9258_04280 PF01618 MotA/TolQ/ExbB proton channel family A9258_04290 PF07715 TonB-dependent Receptor Plug Domain A9258_04290 PF00593 TonB dependent receptor A9258_04295 PF00528 Binding-protein-dependent transport system inner membrane component A9258_04300 PF12911 N-terminal TM domain of oligopeptide transport permease C A9258_04300 PF00528 Binding-protein-dependent transport system inner membrane component A9258_04310 PF00005 ABC transporter A9258_04310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_04315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_04315 PF00005 ABC transporter A9258_04320 PF01546 Peptidase family M20/M25/M40 A9258_04320 PF07687 Peptidase dimerisation domain A9258_04325 PF00156 Phosphoribosyl transferase domain A9258_04335 PF07417 Sigma factor-binding transcriptional regulator Crl A9258_04340 PF01472 PUA domain A9258_04340 PF00696 Amino acid kinase family A9258_04345 PF00171 Aldehyde dehydrogenase family A9258_04355 PF00582 Universal stress protein family A9258_04370 PF01568 Molydopterin dinucleotide binding domain A9258_04370 PF00384 Molybdopterin oxidoreductase A9258_04370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A9258_04370 PF04324 BFD-like [2Fe-2S] binding domain A9258_04375 PF10414 Sirohaem synthase dimerisation region A9258_04375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A9258_04375 PF14824 Sirohaem biosynthesis protein central A9258_04385 PF00005 ABC transporter A9258_04390 PF00528 Binding-protein-dependent transport system inner membrane component A9258_04395 PF00005 ABC transporter A9258_04400 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A9258_04400 PF13806 Rieske-like [2Fe-2S] domain A9258_04400 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A9258_04400 PF18267 Rubredoxin NAD+ reductase C-terminal domain A9258_04400 PF04324 BFD-like [2Fe-2S] binding domain A9258_04400 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_04405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A9258_04405 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_04405 PF13806 Rieske-like [2Fe-2S] domain A9258_04405 PF18267 Rubredoxin NAD+ reductase C-terminal domain A9258_04405 PF04324 BFD-like [2Fe-2S] binding domain A9258_04405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A9258_04410 PF00294 pfkB family carbohydrate kinase A9258_04415 PF04227 Indigoidine synthase A like protein A9258_04420 PF00194 Eukaryotic-type carbonic anhydrase A9258_04425 PF00034 Cytochrome c A9258_04425 PF03150 Di-haem cytochrome c peroxidase A9258_04460 PF00550 Phosphopantetheine attachment site A9258_04465 PF00550 Phosphopantetheine attachment site A9258_04475 PF13193 AMP-binding enzyme C-terminal domain A9258_04475 PF00501 AMP-binding enzyme A9258_04480 PF07977 FabA-like domain A9258_04490 PF00221 Aromatic amino acid lyase A9258_04515 PF00109 Beta-ketoacyl synthase, N-terminal domain A9258_04515 PF02801 Beta-ketoacyl synthase, C-terminal domain A9258_04530 PF02801 Beta-ketoacyl synthase, C-terminal domain A9258_04530 PF00109 Beta-ketoacyl synthase, N-terminal domain A9258_04540 PF00994 Probable molybdopterin binding domain A9258_04550 PF06738 Putative threonine/serine exporter A9258_04555 PF12821 Threonine/Serine exporter, ThrE A9258_04560 PF00186 Dihydrofolate reductase A9258_04565 PF00005 ABC transporter A9258_04565 PF00571 CBS domain A9258_04570 PF00528 Binding-protein-dependent transport system inner membrane component A9258_04575 PF04069 Substrate binding domain of ABC-type glycine betaine transport system A9258_04580 PF01507 Phosphoadenosine phosphosulfate reductase family A9258_04585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A9258_04585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A9258_04590 PF00258 Flavodoxin A9258_04590 PF00667 FAD binding domain A9258_04590 PF00175 Oxidoreductase NAD-binding domain A9258_04595 PF02567 Phenazine biosynthesis-like protein A9258_04600 PF01336 OB-fold nucleic acid binding domain A9258_04600 PF00152 tRNA synthetases class II (D, K and N) A9258_04605 PF00472 RF-1 domain A9258_04605 PF03462 PCRF domain A9258_04610 PF02743 Cache domain A9258_04610 PF00672 HAMP domain A9258_04610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_04615 PF03616 Sodium/glutamate symporter A9258_04620 PF17763 Glutaminase/Asparaginase C-terminal domain A9258_04620 PF00710 Asparaginase, N-terminal A9258_04625 PF07023 Protein of unknown function (DUF1315) A9258_04630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A9258_04630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A9258_04645 PF01343 Peptidase family S49 A9258_04650 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A9258_04650 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_04655 PF00881 Nitroreductase family A9258_04660 PF12464 Maltose acetyltransferase A9258_04660 PF14602 Hexapeptide repeat of succinyl-transferase A9258_04665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A9258_04665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A9258_04665 PF01842 ACT domain A9258_04675 PF08240 Alcohol dehydrogenase GroES-like domain A9258_04675 PF00107 Zinc-binding dehydrogenase A9258_04680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_04680 PF03466 LysR substrate binding domain A9258_04685 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 A9258_04685 PF02378 Phosphotransferase system, EIIC A9258_04685 PF00367 phosphotransferase system, EIIB A9258_04690 PF00474 Sodium:solute symporter family A9258_04700 PF02785 Biotin carboxylase C-terminal domain A9258_04700 PF00289 Biotin carboxylase, N-terminal domain A9258_04700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A9258_04705 PF00364 Biotin-requiring enzyme A9258_04710 PF01220 Dehydroquinase class II A9258_04715 PF16177 Acetyl-coenzyme A synthetase N-terminus A9258_04715 PF00501 AMP-binding enzyme A9258_04715 PF13193 AMP-binding enzyme C-terminal domain A9258_04725 PF13188 PAS domain A9258_04725 PF00563 EAL domain A9258_04725 PF00990 Diguanylate cyclase, GGDEF domain A9258_04725 PF03707 Bacterial signalling protein N terminal repeat A9258_04745 PF02613 Nitrate reductase delta subunit A9258_04760 PF00464 Serine hydroxymethyltransferase A9258_04775 PF03477 ATP cone domain A9258_04780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A9258_04780 PF01872 RibD C-terminal domain A9258_04785 PF00677 Lumazine binding domain A9258_04790 PF00925 GTP cyclohydrolase II A9258_04790 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase A9258_04800 PF00885 6,7-dimethyl-8-ribityllumazine synthase A9258_04805 PF01029 NusB family A9258_04810 PF00586 AIR synthase related protein, N-terminal domain A9258_04810 PF02769 AIR synthase related protein, C-terminal domain A9258_04815 PF04608 Phosphatidylglycerophosphatase A A9258_04820 PF00005 ABC transporter A9258_04820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_04825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_04835 PF00528 Binding-protein-dependent transport system inner membrane component A9258_04835 PF12911 N-terminal TM domain of oligopeptide transport permease C A9258_04840 PF13292 1-deoxy-D-xylulose-5-phosphate synthase A9258_04840 PF02779 Transketolase, pyrimidine binding domain A9258_04840 PF02780 Transketolase, C-terminal domain A9258_04845 PF00348 Polyprenyl synthetase A9258_04850 PF02609 Exonuclease VII small subunit A9258_04855 PF01618 MotA/TolQ/ExbB proton channel family A9258_04860 PF13677 Membrane MotB of proton-channel complex MotA/MotB A9258_04860 PF00691 OmpA family A9258_04865 PF01272 Transcription elongation factor, GreA/GreB, C-term A9258_04865 PF03449 Transcription elongation factor, N-terminal A9258_04875 PF01985 CRS1 / YhbY (CRM) domain A9258_04880 PF01728 FtsJ-like methyltransferase A9258_04885 PF06480 FtsH Extracellular A9258_04885 PF17862 AAA+ lid domain A9258_04885 PF01434 Peptidase family M41 A9258_04885 PF00004 ATPase family associated with various cellular activities (AAA) A9258_04890 PF00809 Pterin binding enzyme A9258_04895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A9258_04895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A9258_04895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A9258_04895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A9258_04900 PF00121 Triosephosphate isomerase A9258_04905 PF03840 Preprotein translocase SecG subunit A9258_04920 PF17384 RimP C-terminal SH3 domain A9258_04920 PF02576 RimP N-terminal domain A9258_04925 PF08529 NusA N-terminal domain A9258_04925 PF13184 NusA-like KH domain A9258_04925 PF00575 S1 RNA binding domain A9258_04930 PF11987 Translation-initiation factor 2 A9258_04930 PF00009 Elongation factor Tu GTP binding domain A9258_04930 PF04760 Translation initiation factor IF-2, N-terminal region A9258_04930 PF08364 Bacterial translation initiation factor IF-2 associated region A9258_04935 PF02033 Ribosome-binding factor A A9258_04940 PF01509 TruB family pseudouridylate synthase (N terminal domain) A9258_04940 PF09157 Pseudouridine synthase II TruB, C-terminal A9258_04940 PF16198 tRNA pseudouridylate synthase B C-terminal domain A9258_04945 PF00312 Ribosomal protein S15 A9258_04950 PF00013 KH domain A9258_04950 PF03725 3' exoribonuclease family, domain 2 A9258_04950 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain A9258_04950 PF01138 3' exoribonuclease family, domain 1 A9258_04950 PF00575 S1 RNA binding domain A9258_04960 PF00563 EAL domain A9258_04960 PF03707 Bacterial signalling protein N terminal repeat A9258_04960 PF00990 Diguanylate cyclase, GGDEF domain A9258_04965 PF02635 DsrE/DsrF-like family A9258_04975 PF00206 Lyase A9258_04975 PF10415 Fumarase C C-terminus A9258_04980 PF03575 Peptidase family S51 A9258_04985 PF02554 Carbon starvation protein CstA A9258_04985 PF13722 5TM C-terminal transporter carbon starvation CstA A9258_04990 PF04397 LytTr DNA-binding domain A9258_04990 PF00072 Response regulator receiver domain A9258_05000 PF00072 Response regulator receiver domain A9258_05000 PF00196 Bacterial regulatory proteins, luxR family A9258_05015 PF00384 Molybdopterin oxidoreductase A9258_05015 PF01568 Molydopterin dinucleotide binding domain A9258_05015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A9258_05045 PF03734 L,D-transpeptidase catalytic domain A9258_05045 PF17969 L,D-transpeptidase C-terminal domain A9258_05055 PF01523 Putative modulator of DNA gyrase A9258_05065 PF00258 Flavodoxin A9258_05070 PF02899 Phage integrase, N-terminal SAM-like domain A9258_05070 PF00589 Phage integrase family A9258_05075 PF01741 Large-conductance mechanosensitive channel, MscL A9258_05080 PF10411 Disulfide bond isomerase protein N-terminus A9258_05080 PF13098 Thioredoxin-like domain A9258_05085 PF17768 RecJ OB domain A9258_05085 PF02272 DHHA1 domain A9258_05085 PF01368 DHH family A9258_05090 PF13411 MerR HTH family regulatory protein A9258_05105 PF02508 Rnf-Nqr subunit, membrane protein A9258_05110 PF06821 Serine hydrolase A9258_05120 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family A9258_05120 PF04055 Radical SAM superfamily A9258_05125 PF03099 Biotin/lipoate A/B protein ligase family A9258_05130 PF04359 Protein of unknown function (DUF493) A9258_05135 PF07943 Penicillin-binding protein 5, C-terminal domain A9258_05135 PF00768 D-alanyl-D-alanine carboxypeptidase A9258_05140 PF03330 Lytic transglycolase A9258_05140 PF05036 Sporulation related domain A9258_05145 PF13406 Transglycosylase SLT domain A9258_05150 PF01098 Cell cycle protein A9258_05155 PF03717 Penicillin-binding Protein dimerisation domain A9258_05155 PF00905 Penicillin binding protein transpeptidase domain A9258_05160 PF02590 Predicted SPOUT methyltransferase A9258_05170 PF01467 Cytidylyltransferase-like A9258_05185 PF00133 tRNA synthetases class I (I, L, M and V) A9258_05185 PF08264 Anticodon-binding domain of tRNA A9258_05185 PF13603 Leucyl-tRNA synthetase, Domain 2 A9258_05190 PF07295 Zinc-ribbon containing domain A9258_05195 PF00795 Carbon-nitrogen hydrolase A9258_05200 PF00571 CBS domain A9258_05200 PF03471 Transporter associated domain A9258_05205 PF02130 Uncharacterized protein family UPF0054 A9258_05210 PF02562 PhoH-like protein A9258_05215 PF04055 Radical SAM superfamily A9258_05215 PF01938 TRAM domain A9258_05215 PF00919 Uncharacterized protein family UPF0004 A9258_05220 PF01494 FAD binding domain A9258_05225 PF00857 Isochorismatase family A9258_05230 PF00313 'Cold-shock' DNA-binding domain A9258_05235 PF00990 Diguanylate cyclase, GGDEF domain A9258_05235 PF05230 MASE2 domain A9258_05250 PF13419 Haloacid dehalogenase-like hydrolase A9258_05260 PF08448 PAS fold A9258_05260 PF00990 Diguanylate cyclase, GGDEF domain A9258_05270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A9258_05270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A9258_05280 PF09997 Predicted membrane protein (DUF2238) A9258_05285 PF09285 Elongation factor P, C-terminal A9258_05285 PF08207 Elongation factor P (EF-P) KOW-like domain A9258_05285 PF01132 Elongation factor P (EF-P) OB domain A9258_05295 PF00478 IMP dehydrogenase / GMP reductase domain A9258_05305 PF08521 Two-component sensor kinase N-terminal A9258_05305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_05305 PF00512 His Kinase A (phospho-acceptor) domain A9258_05310 PF00486 Transcriptional regulatory protein, C terminal A9258_05310 PF00072 Response regulator receiver domain A9258_05330 PF00501 AMP-binding enzyme A9258_05345 PF06224 Winged helix DNA-binding domain A9258_05365 PF02313 Fumarate reductase subunit D A9258_05370 PF02300 Fumarate reductase subunit C A9258_05375 PF13085 2Fe-2S iron-sulfur cluster binding domain A9258_05375 PF13183 4Fe-4S dicluster domain A9258_05380 PF02910 Fumarate reductase flavoprotein C-term A9258_05380 PF00890 FAD binding domain A9258_05385 PF00672 HAMP domain A9258_05385 PF02743 Cache domain A9258_05385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_05390 PF03009 Glycerophosphoryl diester phosphodiesterase family A9258_05395 PF12794 Mechanosensitive ion channel inner membrane domain 1 A9258_05395 PF00924 Mechanosensitive ion channel A9258_05395 PF12795 Mechanosensitive ion channel porin domain A9258_05405 PF01476 LysM domain A9258_05405 PF08525 Opacity-associated protein A N-terminal motif A9258_05405 PF01551 Peptidase family M23 A9258_05420 PF03466 LysR substrate binding domain A9258_05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_05435 PF00672 HAMP domain A9258_05435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_05435 PF02743 Cache domain A9258_05440 PF03466 LysR substrate binding domain A9258_05440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_05445 PF17092 Penicillin-binding protein OB-like domain A9258_05445 PF00912 Transglycosylase A9258_05445 PF00905 Penicillin binding protein transpeptidase domain A9258_05470 PF00263 Bacterial type II and III secretion system protein A9258_05470 PF03958 Bacterial type II/III secretion system short domain A9258_05470 PF11741 AMIN domain A9258_05470 PF07660 Secretin and TonB N terminus short domain A9258_05475 PF01202 Shikimate kinase A9258_05480 PF01761 3-dehydroquinate synthase A9258_05490 PF02086 D12 class N6 adenine-specific DNA methyltransferase A9258_05495 PF00834 Ribulose-phosphate 3 epimerase family A9258_05500 PF13419 Haloacid dehalogenase-like hydrolase A9258_05505 PF00579 tRNA synthetases class I (W and Y) A9258_05515 PF00117 Glutamine amidotransferase class-I A9258_05520 PF00202 Aminotransferase class-III A9258_05525 PF04958 Arginine N-succinyltransferase beta subunit A9258_05530 PF00171 Aldehyde dehydrogenase family A9258_05540 PF13419 Haloacid dehalogenase-like hydrolase A9258_05545 PF07690 Major Facilitator Superfamily A9258_05550 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II A9258_05550 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase A9258_05550 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg A9258_05550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A9258_05550 PF10371 Domain of unknown function A9258_05560 PF16657 Maltogenic Amylase, C-terminal domain A9258_05560 PF00128 Alpha amylase, catalytic domain A9258_05580 PF01048 Phosphorylase superfamily A9258_05585 PF04973 Nicotinamide mononucleotide transporter A9258_05590 PF02080 TrkA-C domain A9258_05590 PF03600 Citrate transporter A9258_05665 PF06071 Protein of unknown function (DUF933) A9258_05665 PF01926 50S ribosome-binding GTPase A9258_05670 PF01195 Peptidyl-tRNA hydrolase A9258_05675 PF02872 5'-nucleotidase, C-terminal domain A9258_05675 PF00149 Calcineurin-like phosphoesterase A9258_05680 PF14572 Phosphoribosyl synthetase-associated domain A9258_05680 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A9258_05695 PF03550 Outer membrane lipoprotein LolB A9258_05700 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain A9258_05700 PF01488 Shikimate / quinate 5-dehydrogenase A9258_05700 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain A9258_05705 PF00472 RF-1 domain A9258_05705 PF03462 PCRF domain A9258_05710 PF13847 Methyltransferase domain A9258_05710 PF17827 PrmC N-terminal domain A9258_05720 PF13369 Transglutaminase-like superfamily A9258_05725 PF00793 DAHP synthetase I family A9258_05730 PF00375 Sodium:dicarboxylate symporter family A9258_05735 PF01228 Glycine radical A9258_05740 PF03167 Uracil DNA glycosylase superfamily A9258_05755 PF00923 Transaldolase/Fructose-6-phosphate aldolase A9258_05760 PF01235 Sodium:alanine symporter family A9258_05765 PF01841 Transglutaminase-like superfamily A9258_05765 PF13559 Domain of unknown function (DUF4129) A9258_05765 PF11992 Domain of unknown function (DUF3488) A9258_05775 PF07726 ATPase family associated with various cellular activities (AAA) A9258_05775 PF17863 AAA lid domain A9258_05780 PF00144 Beta-lactamase A9258_05785 PF00854 POT family A9258_05790 PF03652 Holliday junction resolvase A9258_05795 PF02622 Uncharacterized ACR, COG1678 A9258_05800 PF00672 HAMP domain A9258_05800 PF12729 Four helix bundle sensory module for signal transduction A9258_05800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_05805 PF02951 Prokaryotic glutathione synthetase, N-terminal domain A9258_05805 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain A9258_05810 PF04452 RNA methyltransferase A9258_05815 PF04231 Endonuclease I A9258_05820 PF10263 SprT-like family A9258_05820 PF17283 SprT-like zinc ribbon domain A9258_05825 PF02773 S-adenosylmethionine synthetase, C-terminal domain A9258_05825 PF02772 S-adenosylmethionine synthetase, central domain A9258_05825 PF00438 S-adenosylmethionine synthetase, N-terminal domain A9258_05830 PF02779 Transketolase, pyrimidine binding domain A9258_05830 PF00456 Transketolase, thiamine diphosphate binding domain A9258_05830 PF02780 Transketolase, C-terminal domain A9258_05840 PF12792 CSS motif domain associated with EAL A9258_05840 PF00563 EAL domain A9258_05850 PF01042 Endoribonuclease L-PSP A9258_05855 PF01965 DJ-1/PfpI family A9258_05865 PF03702 Anhydro-N-acetylmuramic acid kinase A9258_05870 PF08525 Opacity-associated protein A N-terminal motif A9258_05870 PF01551 Peptidase family M23 A9258_05870 PF01476 LysM domain A9258_05875 PF00579 tRNA synthetases class I (W and Y) A9258_05880 PF01204 Trehalase A9258_05890 PF01161 Phosphatidylethanolamine-binding protein A9258_05900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_05900 PF03466 LysR substrate binding domain A9258_05910 PF00155 Aminotransferase class I and II A9258_05915 PF07690 Major Facilitator Superfamily A9258_05920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_05920 PF03466 LysR substrate binding domain A9258_05925 PF00106 short chain dehydrogenase A9258_05930 PF08496 Peptidase family S49 N-terminal A9258_05930 PF01343 Peptidase family S49 A9258_05935 PF04996 Succinylarginine dihydrolase A9258_05940 PF08272 Topoisomerase I zinc-ribbon-like A9258_05940 PF01131 DNA topoisomerase A9258_05940 PF01751 Toprim domain A9258_05940 PF01396 Topoisomerase DNA binding C4 zinc finger A9258_05955 PF08447 PAS fold A9258_05955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_05960 PF00728 Glycosyl hydrolase family 20, catalytic domain A9258_05960 PF02838 Glycosyl hydrolase family 20, domain 2 A9258_05965 PF01869 BadF/BadG/BcrA/BcrD ATPase family A9258_05975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_05975 PF00005 ABC transporter A9258_05980 PF00005 ABC transporter A9258_05980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_05985 PF00528 Binding-protein-dependent transport system inner membrane component A9258_05985 PF12911 N-terminal TM domain of oligopeptide transport permease C A9258_05990 PF00528 Binding-protein-dependent transport system inner membrane component A9258_05995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_06000 PF00072 Response regulator receiver domain A9258_06000 PF09308 LuxQ, periplasmic A9258_06000 PF00512 His Kinase A (phospho-acceptor) domain A9258_06000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_06020 PF10725 Protein of unknown function (DUF2517) A9258_06030 PF05114 Protein of unknown function (DUF692) A9258_06050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_06050 PF13426 PAS domain A9258_06050 PF08447 PAS fold A9258_06065 PF04632 Fusaric acid resistance protein family A9258_06070 PF03454 MoeA C-terminal region (domain IV) A9258_06070 PF00994 Probable molybdopterin binding domain A9258_06070 PF03453 MoeA N-terminal region (domain I and II) A9258_06075 PF12804 MobA-like NTP transferase domain A9258_06080 PF00005 ABC transporter A9258_06085 PF00528 Binding-protein-dependent transport system inner membrane component A9258_06090 PF12849 PBP superfamily domain A9258_06095 PF02954 Bacterial regulatory protein, Fis family A9258_06095 PF00158 Sigma-54 interaction domain A9258_06095 PF00072 Response regulator receiver domain A9258_06100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_06100 PF00989 PAS fold A9258_06100 PF00512 His Kinase A (phospho-acceptor) domain A9258_06105 PF12728 Helix-turn-helix domain A9258_06105 PF12727 PBP superfamily domain A9258_06110 PF02634 FdhD/NarQ family A9258_06145 PF12838 4Fe-4S dicluster domain A9258_06145 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A9258_06145 PF01568 Molydopterin dinucleotide binding domain A9258_06145 PF00384 Molybdopterin oxidoreductase A9258_06145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A9258_06145 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A9258_06145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A9258_06145 PF00384 Molybdopterin oxidoreductase A9258_06145 PF01568 Molydopterin dinucleotide binding domain A9258_06145 PF12838 4Fe-4S dicluster domain A9258_06150 PF13247 4Fe-4S dicluster domain A9258_06160 PF00072 Response regulator receiver domain A9258_06165 PF03949 Malic enzyme, NAD binding domain A9258_06165 PF00390 Malic enzyme, N-terminal domain A9258_06170 PF05433 Glycine zipper 2TM domain A9258_06170 PF16998 17 kDa outer membrane surface antigen A9258_06180 PF00860 Permease family A9258_06185 PF10282 Lactonase, 7-bladed beta-propeller A9258_06195 PF02796 Helix-turn-helix domain of resolvase A9258_06195 PF00239 Resolvase, N terminal domain A9258_06220 PF13356 Arm DNA-binding domain A9258_06220 PF00589 Phage integrase family A9258_06225 PF00924 Mechanosensitive ion channel A9258_06225 PF12795 Mechanosensitive ion channel porin domain A9258_06225 PF12794 Mechanosensitive ion channel inner membrane domain 1 A9258_06230 PF00224 Pyruvate kinase, barrel domain A9258_06230 PF02887 Pyruvate kinase, alpha/beta domain A9258_06240 PF04389 Peptidase family M28 A9258_06240 PF04151 Bacterial pre-peptidase C-terminal domain A9258_06245 PF00999 Sodium/hydrogen exchanger family A9258_06245 PF02254 TrkA-N domain A9258_06255 PF04381 Putative exonuclease, RdgC A9258_06265 PF00149 Calcineurin-like phosphoesterase A9258_06265 PF12320 Type 5 capsule protein repressor C-terminal domain A9258_06270 PF13476 AAA domain A9258_06285 PF01292 Prokaryotic cytochrome b561 A9258_06295 PF17151 Periplasmic sensor domain A9258_06295 PF00990 Diguanylate cyclase, GGDEF domain A9258_06300 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 A9258_06305 PF00391 PEP-utilising enzyme, mobile domain A9258_06305 PF02896 PEP-utilising enzyme, TIM barrel domain A9258_06305 PF05524 PEP-utilising enzyme, N-terminal A9258_06310 PF00381 PTS HPr component phosphorylation site A9258_06315 PF00291 Pyridoxal-phosphate dependent enzyme A9258_06320 PF02861 Clp amino terminal domain, pathogenicity island component A9258_06320 PF17871 AAA lid domain A9258_06320 PF07724 AAA domain (Cdc48 subfamily) A9258_06320 PF00004 ATPase family associated with various cellular activities (AAA) A9258_06320 PF10431 C-terminal, D2-small domain, of ClpB protein A9258_06330 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal A9258_06330 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III A9258_06335 PF18389 TrmO C-terminal domain A9258_06335 PF01980 tRNA-methyltransferase O A9258_06355 PF00005 ABC transporter A9258_06355 PF00664 ABC transporter transmembrane region A9258_06360 PF00005 ABC transporter A9258_06360 PF00664 ABC transporter transmembrane region A9258_06375 PF00072 Response regulator receiver domain A9258_06375 PF00486 Transcriptional regulatory protein, C terminal A9258_06385 PF03737 Aldolase/RraA A9258_06400 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) A9258_06405 PF00588 SpoU rRNA Methylase family A9258_06410 PF00696 Amino acid kinase family A9258_06410 PF01842 ACT domain A9258_06410 PF00742 Homoserine dehydrogenase A9258_06410 PF03447 Homoserine dehydrogenase, NAD binding domain A9258_06410 PF13840 ACT domain A9258_06415 PF00288 GHMP kinases N terminal domain A9258_06415 PF08544 GHMP kinases C terminal A9258_06420 PF14821 Threonine synthase N terminus A9258_06420 PF00291 Pyridoxal-phosphate dependent enzyme A9258_06425 PF13474 SnoaL-like domain A9258_06440 PF00005 ABC transporter A9258_06440 PF12848 ABC transporter A9258_06450 PF01048 Phosphorylase superfamily A9258_06465 PF00512 His Kinase A (phospho-acceptor) domain A9258_06465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_06465 PF01627 Hpt domain A9258_06465 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_06465 PF00989 PAS fold A9258_06465 PF00072 Response regulator receiver domain A9258_06470 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase A9258_06475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A9258_06475 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase A9258_06480 PF02690 Na+/Pi-cotransporter A9258_06490 PF13520 Amino acid permease A9258_06500 PF00324 Amino acid permease A9258_06505 PF00202 Aminotransferase class-III A9258_06510 PF00171 Aldehyde dehydrogenase family A9258_06515 PF07883 Cupin domain A9258_06515 PF01381 Helix-turn-helix A9258_06520 PF01266 FAD dependent oxidoreductase A9258_06535 PF00816 H-NS histone family A9258_06540 PF00793 DAHP synthetase I family A9258_06550 PF04954 Siderophore-interacting protein A9258_06550 PF08021 Siderophore-interacting FAD-binding domain A9258_06555 PF02321 Outer membrane efflux protein A9258_06560 PF12704 MacB-like periplasmic core domain A9258_06560 PF02687 FtsX-like permease family A9258_06560 PF00005 ABC transporter A9258_06565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_06575 PF02833 DHHA2 domain A9258_06575 PF01368 DHH family A9258_06585 PF02463 RecF/RecN/SMC N terminal domain A9258_06590 PF01513 ATP-NAD kinase A9258_06595 PF01025 GrpE A9258_06600 PF00012 Hsp70 protein A9258_06605 PF00684 DnaJ central domain A9258_06605 PF00226 DnaJ domain A9258_06605 PF01556 DnaJ C terminal domain A9258_06610 PF11471 Maltoporin periplasmic N-terminal extension A9258_06610 PF02264 LamB porin A9258_06615 PF00294 pfkB family carbohydrate kinase A9258_06620 PF02378 Phosphotransferase system, EIIC A9258_06620 PF00367 phosphotransferase system, EIIB A9258_06625 PF08244 Glycosyl hydrolases family 32 C terminal A9258_06625 PF00251 Glycosyl hydrolases family 32 N-terminal domain A9258_06630 PF13407 Periplasmic binding protein domain A9258_06630 PF00356 Bacterial regulatory proteins, lacI family A9258_06635 PF02308 MgtC family A9258_06650 PF01022 Bacterial regulatory protein, arsR family A9258_06655 PF04143 Sulphur transport A9258_06670 PF00873 AcrB/AcrD/AcrF family A9258_06675 PF03707 Bacterial signalling protein N terminal repeat A9258_06675 PF00990 Diguanylate cyclase, GGDEF domain A9258_06675 PF00563 EAL domain A9258_06680 PF10437 Bacterial lipoate protein ligase C-terminus A9258_06680 PF03099 Biotin/lipoate A/B protein ligase family A9258_06700 PF00873 AcrB/AcrD/AcrF family A9258_06705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_06705 PF00529 HlyD membrane-fusion protein of T1SS A9258_06715 PF00873 AcrB/AcrD/AcrF family A9258_06720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_06725 PF03372 Endonuclease/Exonuclease/phosphatase family A9258_06740 PF07690 Major Facilitator Superfamily A9258_06745 PF02424 ApbE family A9258_06750 PF00127 Copper binding proteins, plastocyanin/azurin family A9258_06765 PF01156 Inosine-uridine preferring nucleoside hydrolase A9258_06775 PF00034 Cytochrome c A9258_06775 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A9258_06785 PF00116 Cytochrome C oxidase subunit II, periplasmic domain A9258_06785 PF06481 COX Aromatic Rich Motif A9258_06790 PF00115 Cytochrome C and Quinol oxidase polypeptide I A9258_06795 PF00510 Cytochrome c oxidase subunit III A9258_06800 PF03626 Prokaryotic Cytochrome C oxidase subunit IV A9258_06805 PF01040 UbiA prenyltransferase family A9258_06810 PF07690 Major Facilitator Superfamily A9258_06820 PF02668 Taurine catabolism dioxygenase TauD, TfdA family A9258_06825 PF00528 Binding-protein-dependent transport system inner membrane component A9258_06830 PF00005 ABC transporter A9258_06835 PF04069 Substrate binding domain of ABC-type glycine betaine transport system A9258_06845 PF07662 Na+ dependent nucleoside transporter C-terminus A9258_06845 PF01773 Na+ dependent nucleoside transporter N-terminus A9258_06845 PF07670 Nucleoside recognition A9258_06865 PF04307 LexA-binding, inner membrane-associated putative hydrolase A9258_06870 PF00290 Tryptophan synthase alpha chain A9258_06875 PF00291 Pyridoxal-phosphate dependent enzyme A9258_06880 PF00218 Indole-3-glycerol phosphate synthase A9258_06880 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase A9258_06885 PF00591 Glycosyl transferase family, a/b domain A9258_06885 PF02885 Glycosyl transferase family, helical bundle domain A9258_06890 PF00117 Glutamine amidotransferase class-I A9258_06890 PF02885 Glycosyl transferase family, helical bundle domain A9258_06890 PF00591 Glycosyl transferase family, a/b domain A9258_06895 PF00425 chorismate binding enzyme A9258_06895 PF04715 Anthranilate synthase component I, N terminal region A9258_06900 PF02811 PHP domain A9258_06905 PF01300 Telomere recombination A9258_06910 PF02616 Segregation and condensation protein ScpA A9258_06915 PF04079 Segregation and condensation complex subunit ScpB A9258_06920 PF01479 S4 domain A9258_06920 PF00849 RNA pseudouridylate synthase A9258_06940 PF00440 Bacterial regulatory proteins, tetR family A9258_06940 PF08361 MAATS-type transcriptional repressor, C-terminal region A9258_06945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_06945 PF00529 HlyD membrane-fusion protein of T1SS A9258_06950 PF00873 AcrB/AcrD/AcrF family A9258_06955 PF02321 Outer membrane efflux protein A9258_06960 PF16363 GDP-mannose 4,6 dehydratase A9258_06965 PF04321 RmlD substrate binding domain A9258_06970 PF00483 Nucleotidyl transferase A9258_06975 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase A9258_06985 PF00005 ABC transporter A9258_07005 PF01370 NAD dependent epimerase/dehydratase family A9258_07010 PF00953 Glycosyl transferase family 4 A9258_07015 PF02719 Polysaccharide biosynthesis protein A9258_07020 PF00953 Glycosyl transferase family 4 A9258_07030 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A9258_07030 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A9258_07030 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A9258_07035 PF01370 NAD dependent epimerase/dehydratase family A9258_07060 PF08485 Polysaccharide biosynthesis protein C-terminal A9258_07060 PF02719 Polysaccharide biosynthesis protein A9258_07065 PF04321 RmlD substrate binding domain A9258_07070 PF02350 UDP-N-acetylglucosamine 2-epimerase A9258_07080 PF02563 Polysaccharide biosynthesis/export protein A9258_07080 PF18412 Outer-membrane lipoprotein Wza C-terminal domain A9258_07080 PF10531 SLBB domain A9258_07090 PF13614 AAA domain A9258_07090 PF13807 G-rich domain on putative tyrosine kinase A9258_07090 PF02706 Chain length determinant protein A9258_07095 PF06082 Exopolysaccharide biosynthesis protein YbjH A9258_07105 PF04337 Protein of unknown function, DUF480 A9258_07110 PF00271 Helicase conserved C-terminal domain A9258_07110 PF04434 SWIM zinc finger A9258_07110 PF00176 SNF2 family N-terminal domain A9258_07115 PF05472 DNA replication terminus site-binding protein (Ter protein) A9258_07125 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family A9258_07130 PF00676 Dehydrogenase E1 component A9258_07135 PF02780 Transketolase, C-terminal domain A9258_07135 PF02779 Transketolase, pyrimidine binding domain A9258_07140 PF00364 Biotin-requiring enzyme A9258_07140 PF02817 e3 binding domain A9258_07140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A9258_07145 PF00313 'Cold-shock' DNA-binding domain A9258_07170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_07175 PF00892 EamA-like transporter family A9258_07180 PF08220 DeoR-like helix-turn-helix domain A9258_07180 PF00455 DeoR C terminal sensor domain A9258_07190 PF04055 Radical SAM superfamily A9258_07195 PF00923 Transaldolase/Fructose-6-phosphate aldolase A9258_07205 PF11871 Domain of unknown function (DUF3391) A9258_07205 PF01966 HD domain A9258_07210 PF01479 S4 domain A9258_07210 PF00849 RNA pseudouridylate synthase A9258_07220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_07225 PF12850 Calcineurin-like phosphoesterase superfamily domain A9258_07240 PF13144 Chaperone for flagella basal body P-ring formation A9258_07245 PF00072 Response regulator receiver domain A9258_07245 PF01584 CheW-like domain A9258_07250 PF03705 CheR methyltransferase, all-alpha domain A9258_07250 PF01739 CheR methyltransferase, SAM binding domain A9258_07255 PF00460 Flagella basal body rod protein A9258_07260 PF00460 Flagella basal body rod protein A9258_07260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A9258_07270 PF07559 Flagellar basal body protein FlaE A9258_07270 PF00460 Flagella basal body rod protein A9258_07270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A9258_07275 PF00460 Flagella basal body rod protein A9258_07275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A9258_07280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A9258_07280 PF00460 Flagella basal body rod protein A9258_07285 PF02107 Flagellar L-ring protein A9258_07290 PF02119 Flagellar P-ring protein A9258_07295 PF10135 Rod binding protein A9258_07295 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase A9258_07300 PF00460 Flagella basal body rod protein A9258_07300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A9258_07305 PF00669 Bacterial flagellin N-terminal helical region A9258_07310 PF00571 CBS domain A9258_07310 PF03448 MgtE intracellular N domain A9258_07310 PF01769 Divalent cation transporter A9258_07315 PF02541 Ppx/GppA phosphatase family A9258_07320 PF02503 Polyphosphate kinase middle domain A9258_07320 PF13090 Polyphosphate kinase C-terminal domain 2 A9258_07320 PF17941 Polyphosphate kinase C-terminal domain 1 A9258_07320 PF13089 Polyphosphate kinase N-terminal domain A9258_07325 PF01842 ACT domain A9258_07335 PF00158 Sigma-54 interaction domain A9258_07335 PF00072 Response regulator receiver domain A9258_07335 PF02954 Bacterial regulatory protein, Fis family A9258_07340 PF00512 His Kinase A (phospho-acceptor) domain A9258_07340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_07340 PF00989 PAS fold A9258_07345 PF00158 Sigma-54 interaction domain A9258_07345 PF02954 Bacterial regulatory protein, Fis family A9258_07350 PF01784 NIF3 (NGG1p interacting factor 3) A9258_07355 PF00551 Formyl transferase A9258_07360 PF00586 AIR synthase related protein, N-terminal domain A9258_07360 PF02769 AIR synthase related protein, C-terminal domain A9258_07375 PF00308 Bacterial dnaA protein A9258_07380 PF00463 Isocitrate lyase family A9258_07385 PF01274 Malate synthase A9258_07395 PF14437 MafB19-like deaminase A9258_07400 PF00528 Binding-protein-dependent transport system inner membrane component A9258_07405 PF00528 Binding-protein-dependent transport system inner membrane component A9258_07415 PF01895 PhoU domain A9258_07420 PF00571 CBS domain A9258_07420 PF03471 Transporter associated domain A9258_07420 PF01595 Cyclin M transmembrane N-terminal domain A9258_07430 PF02574 Homocysteine S-methyltransferase A9258_07430 PF00809 Pterin binding enzyme A9258_07430 PF02965 Vitamin B12 dependent methionine synthase, activation domain A9258_07430 PF02607 B12 binding domain A9258_07430 PF02310 B12 binding domain A9258_07435 PF13520 Amino acid permease A9258_07440 PF04116 Fatty acid hydroxylase superfamily A9258_07450 PF00005 ABC transporter A9258_07455 PF00528 Binding-protein-dependent transport system inner membrane component A9258_07460 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_07465 PF08448 PAS fold A9258_07465 PF00990 Diguanylate cyclase, GGDEF domain A9258_07470 PF07690 Major Facilitator Superfamily A9258_07475 PF05231 MASE1 A9258_07475 PF07730 Histidine kinase A9258_07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_07480 PF00072 Response regulator receiver domain A9258_07480 PF00196 Bacterial regulatory proteins, luxR family A9258_07485 PF01272 Transcription elongation factor, GreA/GreB, C-term A9258_07485 PF14760 Rnk N-terminus A9258_07505 PF00245 Alkaline phosphatase A9258_07510 PF00245 Alkaline phosphatase A9258_07515 PF01926 50S ribosome-binding GTPase A9258_07520 PF07690 Major Facilitator Superfamily A9258_07525 PF00850 Histone deacetylase domain A9258_07535 PF13307 Helicase C-terminal domain A9258_07535 PF06733 DEAD_2 A9258_07540 PF13609 Gram-negative porin A9258_07550 PF00155 Aminotransferase class I and II A9258_07555 PF05872 Bacterial protein of unknown function (DUF853) A9258_07575 PF13737 Transposase DDE domain A9258_07620 PF00155 Aminotransferase class I and II A9258_07620 PF00392 Bacterial regulatory proteins, gntR family A9258_07625 PF00701 Dihydrodipicolinate synthetase family A9258_07635 PF01037 Lrp/AsnC ligand binding domain A9258_07665 PF00816 H-NS histone family A9258_07700 PF00664 ABC transporter transmembrane region A9258_07700 PF00005 ABC transporter A9258_07705 PF02606 Tetraacyldisaccharide-1-P 4'-kinase A9258_07710 PF03966 Trm112p-like protein A9258_07715 PF02348 Cytidylyltransferase A9258_07720 PF00072 Response regulator receiver domain A9258_07720 PF00196 Bacterial regulatory proteins, luxR family A9258_07725 PF01541 GIY-YIG catalytic domain A9258_07725 PF02151 UvrB/uvrC motif A9258_07725 PF08459 UvrC Helix-hairpin-helix N-terminal A9258_07730 PF01066 CDP-alcohol phosphatidyltransferase A9258_07750 PF13356 Arm DNA-binding domain A9258_07750 PF00589 Phage integrase family A9258_07770 PF13817 IS66 C-terminal element A9258_07770 PF13007 Transposase C of IS166 homeodomain A9258_07770 PF03050 Transposase IS66 family A9258_07770 PF13005 zinc-finger binding domain of transposase IS66 A9258_07780 PF00171 Aldehyde dehydrogenase family A9258_07790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A9258_07790 PF00205 Thiamine pyrophosphate enzyme, central domain A9258_07790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A9258_07795 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A9258_07795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A9258_07800 PF13407 Periplasmic binding protein domain A9258_07805 PF00005 ABC transporter A9258_07810 PF02653 Branched-chain amino acid transport system / permease component A9258_07815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A9258_07815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A9258_07820 PF00294 pfkB family carbohydrate kinase A9258_07825 PF01261 Xylose isomerase-like TIM barrel A9258_07830 PF04962 KduI/IolB family A9258_07835 PF01609 Transposase DDE domain A9258_07835 PF05598 Transposase domain (DUF772) A9258_07840 PF01527 Transposase A9258_07845 PF00665 Integrase core domain A9258_07845 PF13276 HTH-like domain A9258_07880 PF01757 Acyltransferase family A9258_07890 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB A9258_07895 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) A9258_07915 PF13247 4Fe-4S dicluster domain A9258_07915 PF00037 4Fe-4S binding domain A9258_07920 PF03916 Polysulphide reductase, NrfD A9258_07925 PF00149 Calcineurin-like phosphoesterase A9258_07935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A9258_07940 PF01406 tRNA synthetases class I (C) catalytic domain A9258_07940 PF09190 DALR domain A9258_07955 PF00990 Diguanylate cyclase, GGDEF domain A9258_07955 PF13185 GAF domain A9258_07985 PF01169 Uncharacterized protein family UPF0016 A9258_07990 PF01253 Translation initiation factor SUI1 A9258_08000 PF07670 Nucleoside recognition A9258_08000 PF07664 Ferrous iron transport protein B C terminus A9258_08000 PF02421 Ferrous iron transport protein B A9258_08015 PF00483 Nucleotidyl transferase A9258_08020 PF00437 Type II/IV secretion system protein A9258_08030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_08030 PF01627 Hpt domain A9258_08030 PF00989 PAS fold A9258_08030 PF00072 Response regulator receiver domain A9258_08030 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_08030 PF00512 His Kinase A (phospho-acceptor) domain A9258_08035 PF01032 FecCD transport family A9258_08040 PF00005 ABC transporter A9258_08045 PF00583 Acetyltransferase (GNAT) family A9258_08050 PF00793 DAHP synthetase I family A9258_08055 PF01219 Prokaryotic diacylglycerol kinase A9258_08060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A9258_08060 PF01842 ACT domain A9258_08060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A9258_08065 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) A9258_08070 PF01812 5-formyltetrahydrofolate cyclo-ligase family A9258_08080 PF05173 Dihydrodipicolinate reductase, C-terminus A9258_08080 PF01113 Dihydrodipicolinate reductase, N-terminus A9258_08085 PF00117 Glutamine amidotransferase class-I A9258_08085 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain A9258_08090 PF02142 MGS-like domain A9258_08090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A9258_08090 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A9258_08095 PF08502 LeuA allosteric (dimerisation) domain A9258_08095 PF00682 HMGL-like A9258_08100 PF07759 Protein of unknown function (DUF1615) A9258_08125 PF13302 Acetyltransferase (GNAT) domain A9258_08130 PF00271 Helicase conserved C-terminal domain A9258_08130 PF00270 DEAD/DEAH box helicase A9258_08140 PF14521 Lysine-specific metallo-endopeptidase A9258_08155 PF00376 MerR family regulatory protein A9258_08155 PF09278 MerR, DNA binding A9258_08170 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_08175 PF00528 Binding-protein-dependent transport system inner membrane component A9258_08185 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster A9258_08185 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_08190 PF00310 Glutamine amidotransferases class-II A9258_08190 PF04898 Glutamate synthase central domain A9258_08190 PF01645 Conserved region in glutamate synthase A9258_08190 PF01493 GXGXG motif A9258_08195 PF16199 Radical_SAM C-terminal domain A9258_08195 PF04055 Radical SAM superfamily A9258_08200 PF00664 ABC transporter transmembrane region A9258_08200 PF03412 Peptidase C39 family A9258_08200 PF00005 ABC transporter A9258_08250 PF00324 Amino acid permease A9258_08260 PF03618 Kinase/pyrophosphorylase A9258_08265 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain A9258_08265 PF02896 PEP-utilising enzyme, TIM barrel domain A9258_08265 PF00391 PEP-utilising enzyme, mobile domain A9258_08275 PF00933 Glycosyl hydrolase family 3 N terminal domain A9258_08275 PF14310 Fibronectin type III-like domain A9258_08275 PF01915 Glycosyl hydrolase family 3 C-terminal domain A9258_08285 PF00082 Subtilase family A9258_08285 PF01483 Proprotein convertase P-domain A9258_08305 PF07969 Amidohydrolase family A9258_08310 PF03180 NLPA lipoprotein A9258_08315 PF01569 PAP2 superfamily A9258_08320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A9258_08320 PF11890 Domain of unknown function (DUF3410) A9258_08320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A9258_08325 PF01118 Semialdehyde dehydrogenase, NAD binding domain A9258_08325 PF02774 Semialdehyde dehydrogenase, dimerisation domain A9258_08335 PF01416 tRNA pseudouridine synthase A9258_08340 PF01039 Carboxyl transferase domain A9258_08340 PF17848 Acetyl-coA carboxylase zinc finger domain A9258_08345 PF02875 Mur ligase family, glutamate ligase domain A9258_08345 PF08245 Mur ligase middle domain A9258_08350 PF05036 Sporulation related domain A9258_08355 PF04358 DsrC like protein A9258_08360 PF12805 FUSC-like inner membrane protein yccS A9258_08365 PF01027 Inhibitor of apoptosis-promoting Bax1 A9258_08385 PF08019 Phosphoethanolamine transferase EptA/EptB A9258_08385 PF00884 Sulfatase A9258_08395 PF03706 Lysylphosphatidylglycerol synthase TM region A9258_08395 PF09924 Uncharacterised conserved protein (DUF2156) A9258_08405 PF08447 PAS fold A9258_08405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_08410 PF13426 PAS domain A9258_08410 PF00990 Diguanylate cyclase, GGDEF domain A9258_08410 PF00563 EAL domain A9258_08415 PF00849 RNA pseudouridylate synthase A9258_08425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A9258_08430 PF04209 homogentisate 1,2-dioxygenase A9258_08440 PF14497 Glutathione S-transferase, C-terminal domain A9258_08440 PF02798 Glutathione S-transferase, N-terminal domain A9258_08445 PF00043 Glutathione S-transferase, C-terminal domain A9258_08445 PF13417 Glutathione S-transferase, N-terminal domain A9258_08455 PF00733 Asparagine synthase A9258_08455 PF13537 Glutamine amidotransferase domain A9258_08465 PF02254 TrkA-N domain A9258_08465 PF00999 Sodium/hydrogen exchanger family A9258_08470 PF13344 Haloacid dehalogenase-like hydrolase A9258_08475 PF00962 Adenosine/AMP deaminase A9258_08480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A9258_08485 PF03471 Transporter associated domain A9258_08485 PF03741 Integral membrane protein TerC family A9258_08495 PF02913 FAD linked oxidases, C-terminal domain A9258_08495 PF01565 FAD binding domain A9258_08495 PF13183 4Fe-4S dicluster domain A9258_08505 PF03061 Thioesterase superfamily A9258_08510 PF00271 Helicase conserved C-terminal domain A9258_08510 PF00270 DEAD/DEAH box helicase A9258_08510 PF03880 DbpA RNA binding domain A9258_08515 PF03553 Na+/H+ antiporter family A9258_08515 PF13726 Na+-H+ antiporter family A9258_08520 PF00929 Exonuclease A9258_08525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_08525 PF12729 Four helix bundle sensory module for signal transduction A9258_08525 PF00672 HAMP domain A9258_08530 PF18393 MotY N-terminal domain A9258_08530 PF00691 OmpA family A9258_08535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A9258_08540 PF00730 HhH-GPD superfamily base excision DNA repair protein A9258_08540 PF00633 Helix-hairpin-helix motif A9258_08540 PF10576 Iron-sulfur binding domain of endonuclease III A9258_08545 PF02508 Rnf-Nqr subunit, membrane protein A9258_08550 PF04205 FMN-binding domain A9258_08555 PF03116 NQR2, RnfD, RnfE family A9258_08560 PF13375 RnfC Barrel sandwich hybrid domain A9258_08560 PF12838 4Fe-4S dicluster domain A9258_08560 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A9258_08560 PF10531 SLBB domain A9258_08565 PF04060 Putative Fe-S cluster A9258_08570 PF02508 Rnf-Nqr subunit, membrane protein A9258_08575 PF00892 EamA-like transporter family A9258_08585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_08585 PF08447 PAS fold A9258_08585 PF13426 PAS domain A9258_08590 PF12241 Trans-2-enoyl-CoA reductase catalytic region A9258_08590 PF07055 Enoyl reductase FAD binding domain A9258_08590 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase A9258_08595 PF03606 C4-dicarboxylate anaerobic carrier A9258_08600 PF00155 Aminotransferase class I and II A9258_08610 PF00462 Glutaredoxin A9258_08615 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family A9258_08620 PF00271 Helicase conserved C-terminal domain A9258_08620 PF04851 Type III restriction enzyme, res subunit A9258_08625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_08625 PF00529 HlyD membrane-fusion protein of T1SS A9258_08630 PF11742 Protein of unknown function (DUF3302) A9258_08635 PF02554 Carbon starvation protein CstA A9258_08640 PF00072 Response regulator receiver domain A9258_08640 PF04397 LytTr DNA-binding domain A9258_08645 PF07694 5TMR of 5TMR-LYT A9258_08645 PF06580 Histidine kinase A9258_08650 PF01966 HD domain A9258_08655 PF00465 Iron-containing alcohol dehydrogenase A9258_08655 PF00171 Aldehyde dehydrogenase family A9258_08665 PF01914 MarC family integral membrane protein A9258_08670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_08675 PF00528 Binding-protein-dependent transport system inner membrane component A9258_08680 PF12911 N-terminal TM domain of oligopeptide transport permease C A9258_08680 PF00528 Binding-protein-dependent transport system inner membrane component A9258_08685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_08685 PF00005 ABC transporter A9258_08695 PF00005 ABC transporter A9258_08695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_08700 PF03741 Integral membrane protein TerC family A9258_08705 PF00842 Alanine racemase, C-terminal domain A9258_08705 PF01168 Alanine racemase, N-terminal domain A9258_08715 PF00375 Sodium:dicarboxylate symporter family A9258_08730 PF01979 Amidohydrolase family A9258_08740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_08740 PF00672 HAMP domain A9258_08745 PF01230 HIT domain A9258_08780 PF02355 Protein export membrane protein A9258_08780 PF13721 SecD export protein N-terminal TM region A9258_08780 PF07549 SecD/SecF GG Motif A9258_08785 PF02355 Protein export membrane protein A9258_08785 PF07549 SecD/SecF GG Motif A9258_08795 PF05661 Protein of unknown function (DUF808) A9258_08800 PF01432 Peptidase family M3 A9258_08800 PF08439 Oligopeptidase F A9258_08805 PF08439 Oligopeptidase F A9258_08805 PF01432 Peptidase family M3 A9258_08810 PF00860 Permease family A9258_08815 PF05728 Uncharacterised protein family (UPF0227) A9258_08820 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_08840 PF01906 Putative heavy-metal-binding A9258_08850 PF14824 Sirohaem biosynthesis protein central A9258_08850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A9258_08850 PF10414 Sirohaem synthase dimerisation region A9258_08855 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A9258_08855 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A9258_08855 PF13187 4Fe-4S dicluster domain A9258_08860 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B A9258_08860 PF00175 Oxidoreductase NAD-binding domain A9258_08865 PF17179 4Fe-4S dicluster domain A9258_08870 PF01734 Patatin-like phospholipase A9258_08875 PF02016 LD-carboxypeptidase N-terminal domain A9258_08875 PF17676 LD-carboxypeptidase C-terminal domain A9258_08880 PF00884 Sulfatase A9258_08890 PF00696 Amino acid kinase family A9258_08890 PF01842 ACT domain A9258_08895 PF00583 Acetyltransferase (GNAT) family A9258_08895 PF00696 Amino acid kinase family A9258_08900 PF01625 Peptide methionine sulfoxide reductase A9258_08925 PF00561 alpha/beta hydrolase fold A9258_08930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A9258_08940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_08940 PF03466 LysR substrate binding domain A9258_08945 PF02652 L-lactate permease A9258_08950 PF02754 Cysteine-rich domain A9258_08955 PF02589 LUD domain A9258_08955 PF13183 4Fe-4S dicluster domain A9258_08955 PF11870 Domain of unknown function (DUF3390) A9258_08960 PF02589 LUD domain A9258_08965 PF02913 FAD linked oxidases, C-terminal domain A9258_08965 PF01565 FAD binding domain A9258_08980 PF00005 ABC transporter A9258_08990 PF07690 Major Facilitator Superfamily A9258_09005 PF01593 Flavin containing amine oxidoreductase A9258_09010 PF03239 Iron permease FTR1 family A9258_09025 PF03350 Uncharacterized protein family, UPF0114 A9258_09040 PF00916 Sulfate permease family A9258_09040 PF01740 STAS domain A9258_09075 PF01527 Transposase A9258_09085 PF01527 Transposase A9258_09090 PF00665 Integrase core domain A9258_09090 PF13333 Integrase core domain A9258_09090 PF13276 HTH-like domain A9258_09105 PF00842 Alanine racemase, C-terminal domain A9258_09105 PF01168 Alanine racemase, N-terminal domain A9258_09110 PF12729 Four helix bundle sensory module for signal transduction A9258_09110 PF00672 HAMP domain A9258_09110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_09115 PF00990 Diguanylate cyclase, GGDEF domain A9258_09115 PF00563 EAL domain A9258_09115 PF03707 Bacterial signalling protein N terminal repeat A9258_09120 PF00072 Response regulator receiver domain A9258_09120 PF01339 CheB methylesterase A9258_09125 PF01739 CheR methyltransferase, SAM binding domain A9258_09125 PF03705 CheR methyltransferase, all-alpha domain A9258_09130 PF01584 CheW-like domain A9258_09135 PF00672 HAMP domain A9258_09135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_09135 PF17202 Single cache domain 3 A9258_09140 PF01584 CheW-like domain A9258_09140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_09140 PF01627 Hpt domain A9258_09140 PF09078 CheY binding A9258_09140 PF02895 Signal transducing histidine kinase, homodimeric domain A9258_09150 PF00072 Response regulator receiver domain A9258_09155 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A9258_09155 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal A9258_09160 PF13247 4Fe-4S dicluster domain A9258_09165 PF03916 Polysulphide reductase, NrfD A9258_09170 PF00374 Nickel-dependent hydrogenase A9258_09175 PF01750 Hydrogenase maturation protease A9258_09180 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE A9258_09185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_09190 PF00528 Binding-protein-dependent transport system inner membrane component A9258_09195 PF12911 N-terminal TM domain of oligopeptide transport permease C A9258_09195 PF00528 Binding-protein-dependent transport system inner membrane component A9258_09200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_09200 PF00005 ABC transporter A9258_09205 PF00005 ABC transporter A9258_09205 PF08402 TOBE domain A9258_09210 PF02492 CobW/HypB/UreG, nucleotide-binding domain A9258_09215 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A9258_09220 PF02769 AIR synthase related protein, C-terminal domain A9258_09220 PF00586 AIR synthase related protein, N-terminal domain A9258_09225 PF01924 Hydrogenase formation hypA family A9258_09230 PF01455 HupF/HypC family A9258_09235 PF17788 HypF Kae1-like domain A9258_09235 PF01300 Telomere recombination A9258_09235 PF00708 Acylphosphatase A9258_09235 PF07503 HypF finger A9258_09240 PF09105 Elongation factor SelB, winged helix A9258_09240 PF03144 Elongation factor Tu domain 2 A9258_09240 PF09106 Elongation factor SelB, winged helix A9258_09240 PF09107 Elongation factor SelB, winged helix A9258_09240 PF00009 Elongation factor Tu GTP binding domain A9258_09245 PF12390 Selenocysteine synthase N terminal A9258_09245 PF03841 L-seryl-tRNA selenium transferase A9258_09250 PF01750 Hydrogenase maturation protease A9258_09255 PF07450 Formate hydrogenlyase maturation protein HycH A9258_09260 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A9258_09265 PF12838 4Fe-4S dicluster domain A9258_09270 PF00374 Nickel-dependent hydrogenase A9258_09270 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A9258_09270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A9258_09275 PF00146 NADH dehydrogenase A9258_09280 PF00361 Proton-conducting membrane transporter A9258_09285 PF12798 4Fe-4S binding domain A9258_09285 PF00037 4Fe-4S binding domain A9258_09290 PF02705 K+ potassium transporter A9258_09295 PF12800 4Fe-4S binding domain A9258_09295 PF13247 4Fe-4S dicluster domain A9258_09300 PF01568 Molydopterin dinucleotide binding domain A9258_09300 PF00384 Molybdopterin oxidoreductase A9258_09300 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A9258_09305 PF00384 Molybdopterin oxidoreductase A9258_09305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A9258_09305 PF01568 Molydopterin dinucleotide binding domain A9258_09315 PF00158 Sigma-54 interaction domain A9258_09315 PF01590 GAF domain A9258_09315 PF02954 Bacterial regulatory protein, Fis family A9258_09320 PF02634 FdhD/NarQ family A9258_09325 PF02132 RecR protein A9258_09325 PF13662 Toprim domain A9258_09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_09330 PF00183 Hsp90 protein A9258_09335 PF05191 Adenylate kinase, active site lid A9258_09340 PF00762 Ferrochelatase A9258_09350 PF00294 pfkB family carbohydrate kinase A9258_09365 PF00563 EAL domain A9258_09365 PF03707 Bacterial signalling protein N terminal repeat A9258_09365 PF00990 Diguanylate cyclase, GGDEF domain A9258_09370 PF00483 Nucleotidyl transferase A9258_09380 PF07273 Protein of unknown function (DUF1439) A9258_09385 PF00425 chorismate binding enzyme A9258_09390 PF00501 AMP-binding enzyme A9258_09390 PF13193 AMP-binding enzyme C-terminal domain A9258_09395 PF00550 Phosphopantetheine attachment site A9258_09395 PF00857 Isochorismatase family A9258_09400 PF00501 AMP-binding enzyme A9258_09400 PF00975 Thioesterase domain A9258_09400 PF00550 Phosphopantetheine attachment site A9258_09400 PF13193 AMP-binding enzyme C-terminal domain A9258_09400 PF00668 Condensation domain A9258_09410 PF13193 AMP-binding enzyme C-terminal domain A9258_09410 PF00501 AMP-binding enzyme A9258_09410 PF07993 Male sterility protein A9258_09410 PF00668 Condensation domain A9258_09410 PF00550 Phosphopantetheine attachment site A9258_09415 PF00501 AMP-binding enzyme A9258_09415 PF00975 Thioesterase domain A9258_09415 PF00550 Phosphopantetheine attachment site A9258_09415 PF00668 Condensation domain A9258_09415 PF13193 AMP-binding enzyme C-terminal domain A9258_09420 PF01497 Periplasmic binding protein A9258_09425 PF01648 4'-phosphopantetheinyl transferase superfamily A9258_09425 PF17837 4'-phosphopantetheinyl transferase N-terminal domain A9258_09430 PF00005 ABC transporter A9258_09435 PF01032 FecCD transport family A9258_09440 PF01032 FecCD transport family A9258_09445 PF07715 TonB-dependent Receptor Plug Domain A9258_09445 PF00593 TonB dependent receptor A9258_09460 PF11143 Protein of unknown function (DUF2919) A9258_09465 PF01544 CorA-like Mg2+ transporter protein A9258_09475 PF01012 Electron transfer flavoprotein domain A9258_09480 PF00766 Electron transfer flavoprotein FAD-binding domain A9258_09480 PF01012 Electron transfer flavoprotein domain A9258_09485 PF00266 Aminotransferase class-V A9258_09490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A9258_09495 PF00793 DAHP synthetase I family A9258_09500 PF00672 HAMP domain A9258_09500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_09505 PF04055 Radical SAM superfamily A9258_09510 PF13742 OB-fold nucleic acid binding domain A9258_09510 PF02601 Exonuclease VII, large subunit A9258_09515 PF00892 EamA-like transporter family A9258_09520 PF02472 Biopolymer transport protein ExbD/TolR A9258_09525 PF01618 MotA/TolQ/ExbB proton channel family A9258_09535 PF02705 K+ potassium transporter A9258_09540 PF00478 IMP dehydrogenase / GMP reductase domain A9258_09540 PF00571 CBS domain A9258_09545 PF00117 Glutamine amidotransferase class-I A9258_09545 PF00958 GMP synthase C terminal domain A9258_09545 PF02540 NAD synthase A9258_09550 PF00589 Phage integrase family A9258_09550 PF13356 Arm DNA-binding domain A9258_09590 PF02805 Metal binding domain of Ada A9258_09590 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A9258_09590 PF12833 Helix-turn-helix domain A9258_09590 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A9258_09605 PF05724 Thiopurine S-methyltransferase (TPMT) A9258_09610 PF05193 Peptidase M16 inactive domain A9258_09610 PF00675 Insulinase (Peptidase family M16) A9258_09615 PF00300 Histidine phosphatase superfamily (branch 1) A9258_09625 PF00892 EamA-like transporter family A9258_09630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_09635 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain A9258_09640 PF17757 UvrB interaction domain A9258_09640 PF02559 CarD-like/TRCF domain A9258_09640 PF00270 DEAD/DEAH box helicase A9258_09640 PF03461 TRCF domain A9258_09640 PF00271 Helicase conserved C-terminal domain A9258_09650 PF02687 FtsX-like permease family A9258_09650 PF12704 MacB-like periplasmic core domain A9258_09655 PF00005 ABC transporter A9258_09660 PF02687 FtsX-like permease family A9258_09660 PF12704 MacB-like periplasmic core domain A9258_09675 PF05698 Bacterial trigger factor protein (TF) C-terminus A9258_09675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A9258_09675 PF05697 Bacterial trigger factor protein (TF) A9258_09680 PF00574 Clp protease A9258_09685 PF06689 ClpX C4-type zinc finger A9258_09685 PF10431 C-terminal, D2-small domain, of ClpB protein A9258_09685 PF07724 AAA domain (Cdc48 subfamily) A9258_09690 PF00004 ATPase family associated with various cellular activities (AAA) A9258_09690 PF05362 Lon protease (S16) C-terminal proteolytic domain A9258_09690 PF02190 ATP-dependent protease La (LON) substrate-binding domain A9258_09700 PF13145 PPIC-type PPIASE domain A9258_09705 PF00005 ABC transporter A9258_09705 PF12848 ABC transporter A9258_09710 PF00474 Sodium:solute symporter family A9258_09715 PF04341 Protein of unknown function, DUF485 A9258_09730 PF00378 Enoyl-CoA hydratase/isomerase A9258_09765 PF01235 Sodium:alanine symporter family A9258_09775 PF06167 Glucose-regulated metallo-peptidase M90 A9258_09780 PF01184 GPR1/FUN34/yaaH family A9258_09795 PF09278 MerR, DNA binding A9258_09795 PF00376 MerR family regulatory protein A9258_09800 PF00682 HMGL-like A9258_09805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A9258_09805 PF00364 Biotin-requiring enzyme A9258_09805 PF00289 Biotin carboxylase, N-terminal domain A9258_09805 PF02785 Biotin carboxylase C-terminal domain A9258_09810 PF00378 Enoyl-CoA hydratase/isomerase A9258_09815 PF01039 Carboxyl transferase domain A9258_09820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A9258_09820 PF02770 Acyl-CoA dehydrogenase, middle domain A9258_09820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A9258_09825 PF00171 Aldehyde dehydrogenase family A9258_09830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A9258_09830 PF02770 Acyl-CoA dehydrogenase, middle domain A9258_09830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A9258_09835 PF00378 Enoyl-CoA hydratase/isomerase A9258_09840 PF00378 Enoyl-CoA hydratase/isomerase A9258_09845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase A9258_09845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A9258_09855 PF13520 Amino acid permease A9258_09860 PF01925 Sulfite exporter TauE/SafE A9258_09885 PF00563 EAL domain A9258_09885 PF00990 Diguanylate cyclase, GGDEF domain A9258_09885 PF08448 PAS fold A9258_09890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_09890 PF00072 Response regulator receiver domain A9258_09890 PF00512 His Kinase A (phospho-acceptor) domain A9258_09890 PF09456 RcsC Alpha-Beta-Loop (ABL) A9258_09895 PF04002 RadC-like JAB domain A9258_09905 PF02796 Helix-turn-helix domain of resolvase A9258_09905 PF00239 Resolvase, N terminal domain A9258_09935 PF02796 Helix-turn-helix domain of resolvase A9258_09935 PF00239 Resolvase, N terminal domain A9258_09960 PF03466 LysR substrate binding domain A9258_09960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_09965 PF12146 Serine aminopeptidase, S33 A9258_09970 PF07676 WD40-like Beta Propeller Repeat A9258_09970 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region A9258_09970 PF00326 Prolyl oligopeptidase family A9258_09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_09980 PF03466 LysR substrate binding domain A9258_09985 PF00248 Aldo/keto reductase family A9258_09995 PF00248 Aldo/keto reductase family A9258_10000 PF00990 Diguanylate cyclase, GGDEF domain A9258_10000 PF07694 5TMR of 5TMR-LYT A9258_10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_10005 PF03466 LysR substrate binding domain A9258_10010 PF00232 Glycosyl hydrolase family 1 A9258_10015 PF13188 PAS domain A9258_10015 PF03707 Bacterial signalling protein N terminal repeat A9258_10015 PF00563 EAL domain A9258_10015 PF00990 Diguanylate cyclase, GGDEF domain A9258_10025 PF01966 HD domain A9258_10035 PF03466 LysR substrate binding domain A9258_10035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_10040 PF01261 Xylose isomerase-like TIM barrel A9258_10045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A9258_10045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A9258_10050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_10050 PF03466 LysR substrate binding domain A9258_10060 PF03279 Bacterial lipid A biosynthesis acyltransferase A9258_10065 PF03279 Bacterial lipid A biosynthesis acyltransferase A9258_10080 PF17151 Periplasmic sensor domain A9258_10080 PF00990 Diguanylate cyclase, GGDEF domain A9258_10090 PF03104 DNA polymerase family B, exonuclease domain A9258_10090 PF00136 DNA polymerase family B A9258_10120 PF01554 MatE A9258_10125 PF06786 Uncharacterised protein family (UPF0253) A9258_10130 PF00677 Lumazine binding domain A9258_10140 PF13419 Haloacid dehalogenase-like hydrolase A9258_10145 PF01370 NAD dependent epimerase/dehydratase family A9258_10145 PF02222 ATP-grasp domain A9258_10150 PF00892 EamA-like transporter family A9258_10155 PF02525 Flavodoxin-like fold A9258_10180 PF17783 CvfB-like winged helix domain A9258_10180 PF13509 S1 domain A9258_10190 PF04269 Protein of unknown function, DUF440 A9258_10195 PF00912 Transglycosylase A9258_10200 PF04269 Protein of unknown function, DUF440 A9258_10205 PF03776 Septum formation topological specificity factor MinE A9258_10210 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain A9258_10215 PF03775 Septum formation inhibitor MinC, C-terminal domain A9258_10215 PF05209 Septum formation inhibitor MinC, N-terminal domain A9258_10220 PF05166 YcgL domain A9258_10225 PF13406 Transglycosylase SLT domain A9258_10230 PF03313 Serine dehydratase alpha chain A9258_10230 PF03315 Serine dehydratase beta chain A9258_10235 PF03315 Serine dehydratase beta chain A9258_10235 PF03313 Serine dehydratase alpha chain A9258_10240 PF06865 Pyrimidine/purine nucleoside phosphorylase A9258_10245 PF00375 Sodium:dicarboxylate symporter family A9258_10250 PF09278 MerR, DNA binding A9258_10250 PF00376 MerR family regulatory protein A9258_10255 PF00108 Thiolase, N-terminal domain A9258_10255 PF02803 Thiolase, C-terminal domain A9258_10260 PF08668 HDOD domain A9258_10260 PF00563 EAL domain A9258_10265 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) A9258_10270 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) A9258_10280 PF04542 Sigma-70 region 2 A9258_10280 PF08281 Sigma-70, region 4 A9258_10305 PF01882 Protein of unknown function DUF58 A9258_10310 PF07726 ATPase family associated with various cellular activities (AAA) A9258_10310 PF17863 AAA lid domain A9258_10315 PF02803 Thiolase, C-terminal domain A9258_10315 PF00108 Thiolase, N-terminal domain A9258_10320 PF00378 Enoyl-CoA hydratase/isomerase A9258_10320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A9258_10320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A9258_10330 PF07152 YaeQ protein A9258_10350 PF10123 Mu-like prophage I protein A9258_10360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A9258_10360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A9258_10365 PF00291 Pyridoxal-phosphate dependent enzyme A9258_10370 PF07687 Peptidase dimerisation domain A9258_10370 PF01546 Peptidase family M20/M25/M40 A9258_10375 PF01979 Amidohydrolase family A9258_10380 PF00696 Amino acid kinase family A9258_10385 PF00892 EamA-like transporter family A9258_10390 PF13478 XdhC Rossmann domain A9258_10390 PF02625 XdhC and CoxI family A9258_10400 PF12804 MobA-like NTP transferase domain A9258_10405 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_10405 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster A9258_10410 PF01979 Amidohydrolase family A9258_10415 PF00941 FAD binding domain in molybdopterin dehydrogenase A9258_10420 PF01799 [2Fe-2S] binding domain A9258_10420 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase A9258_10420 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A9258_10425 PF00860 Permease family A9258_10430 PF01979 Amidohydrolase family A9258_10435 PF00860 Permease family A9258_10440 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A9258_10440 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase A9258_10445 PF03450 CO dehydrogenase flavoprotein C-terminal domain A9258_10445 PF00941 FAD binding domain in molybdopterin dehydrogenase A9258_10450 PF00111 2Fe-2S iron-sulfur cluster binding domain A9258_10450 PF01799 [2Fe-2S] binding domain A9258_10460 PF05433 Glycine zipper 2TM domain A9258_10470 PF03606 C4-dicarboxylate anaerobic carrier A9258_10475 PF13193 AMP-binding enzyme C-terminal domain A9258_10475 PF00501 AMP-binding enzyme A9258_10480 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase A9258_10480 PF01502 Phosphoribosyl-AMP cyclohydrolase A9258_10485 PF00977 Histidine biosynthesis protein A9258_10490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_10490 PF00512 His Kinase A (phospho-acceptor) domain A9258_10490 PF01627 Hpt domain A9258_10490 PF00072 Response regulator receiver domain A9258_10500 PF00072 Response regulator receiver domain A9258_10505 PF00977 Histidine biosynthesis protein A9258_10510 PF00117 Glutamine amidotransferase class-I A9258_10515 PF08645 Polynucleotide kinase 3 phosphatase A9258_10515 PF00475 Imidazoleglycerol-phosphate dehydratase A9258_10520 PF00155 Aminotransferase class I and II A9258_10525 PF00815 Histidinol dehydrogenase A9258_10530 PF08029 HisG, C-terminal domain A9258_10530 PF01634 ATP phosphoribosyltransferase A9258_10540 PF04851 Type III restriction enzyme, res subunit A9258_10540 PF13307 Helicase C-terminal domain A9258_10545 PF00814 Glycoprotease family A9258_10555 PF08241 Methyltransferase domain A9258_10555 PF12697 Alpha/beta hydrolase family A9258_10560 PF00501 AMP-binding enzyme A9258_10560 PF13193 AMP-binding enzyme C-terminal domain A9258_10565 PF01612 3'-5' exonuclease A9258_10565 PF00570 HRDC domain A9258_10570 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_10670 PF02796 Helix-turn-helix domain of resolvase A9258_10670 PF00239 Resolvase, N terminal domain A9258_10680 PF07508 Recombinase A9258_10680 PF13408 Recombinase zinc beta ribbon domain A9258_10680 PF00239 Resolvase, N terminal domain A9258_10690 PF01207 Dihydrouridine synthase (Dus) A9258_10695 PF04304 Protein of unknown function (DUF454) A9258_10700 PF00156 Phosphoribosyl transferase domain A9258_10705 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding A9258_10705 PF12169 DNA polymerase III subunits gamma and tau domain III A9258_10705 PF12170 DNA polymerase III tau subunit V interacting with alpha A9258_10710 PF02575 YbaB/EbfC DNA-binding family A9258_10720 PF00072 Response regulator receiver domain A9258_10720 PF00196 Bacterial regulatory proteins, luxR family A9258_10730 PF00270 DEAD/DEAH box helicase A9258_10730 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold A9258_10730 PF00271 Helicase conserved C-terminal domain A9258_10730 PF11898 Domain of unknown function (DUF3418) A9258_10730 PF04408 Helicase associated domain (HA2) A9258_10745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) A9258_10745 PF00512 His Kinase A (phospho-acceptor) domain A9258_10745 PF01627 Hpt domain A9258_10745 PF00072 Response regulator receiver domain A9258_10745 PF00672 HAMP domain A9258_10745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_10750 PF00072 Response regulator receiver domain A9258_10755 PF00753 Metallo-beta-lactamase superfamily A9258_10765 PF02769 AIR synthase related protein, C-terminal domain A9258_10765 PF00586 AIR synthase related protein, N-terminal domain A9258_10785 PF17785 PUA-like domain A9258_10785 PF10672 S-adenosylmethionine-dependent methyltransferase A9258_10790 PF00672 HAMP domain A9258_10790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_10790 PF12729 Four helix bundle sensory module for signal transduction A9258_10795 PF00708 Acylphosphatase A9258_10800 PF02798 Glutathione S-transferase, N-terminal domain A9258_10800 PF00043 Glutathione S-transferase, C-terminal domain A9258_10805 PF09334 tRNA synthetases class I (M) A9258_10805 PF01588 Putative tRNA binding domain A9258_10805 PF08264 Anticodon-binding domain of tRNA A9258_10810 PF10609 NUBPL iron-transfer P-loop NTPase A9258_10815 PF00485 Phosphoribulokinase / Uridine kinase family A9258_10820 PF00692 dUTPase A9258_10825 PF01384 Phosphate transporter family A9258_10830 PF00575 S1 RNA binding domain A9258_10830 PF10150 Ribonuclease E/G family A9258_10830 PF12111 Polyribonucleotide phosphorylase C terminal A9258_10835 PF01479 S4 domain A9258_10835 PF00849 RNA pseudouridylate synthase A9258_10845 PF02545 Maf-like protein A9258_10850 PF07690 Major Facilitator Superfamily A9258_10855 PF03466 LysR substrate binding domain A9258_10855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_10865 PF02620 Large ribosomal RNA subunit accumulation protein YceD A9258_10870 PF01783 Ribosomal L32p protein family A9258_10875 PF02504 Fatty acid synthesis protein A9258_10880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III A9258_10880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal A9258_10885 PF00698 Acyl transferase domain A9258_10895 PF00550 Phosphopantetheine attachment site A9258_10900 PF00109 Beta-ketoacyl synthase, N-terminal domain A9258_10900 PF02801 Beta-ketoacyl synthase, C-terminal domain A9258_10905 PF01063 Amino-transferase class IV A9258_10910 PF02618 YceG-like family A9258_10915 PF02223 Thymidylate kinase A9258_10920 PF09115 DNA polymerase III, delta subunit, C terminal A9258_10925 PF01026 TatD related DNase A9258_10930 PF00589 Phage integrase family A9258_10940 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF A9258_10940 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF A9258_10940 PF01189 16S rRNA methyltransferase RsmB/F A9258_10945 PF02470 MlaD protein A9258_10950 PF04403 Paraquat-inducible protein A A9258_10965 PF00285 Citrate synthase, C-terminal domain A9258_10970 PF03972 MmgE/PrpD family A9258_10985 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain A9258_10985 PF06974 Protein of unknown function (DUF1298) A9258_11010 PF00106 short chain dehydrogenase A9258_11020 PF07130 YebG protein A9258_11030 PF05362 Lon protease (S16) C-terminal proteolytic domain A9258_11030 PF13654 AAA domain A9258_11035 PF07977 FabA-like domain A9258_11045 PF12848 ABC transporter A9258_11045 PF00005 ABC transporter A9258_11045 PF16326 ABC transporter C-terminal domain A9258_11055 PF01170 Putative RNA methylase family UPF0020 A9258_11055 PF02926 THUMP domain A9258_11055 PF10672 S-adenosylmethionine-dependent methyltransferase A9258_11060 PF07126 Cell-division protein ZapC A9258_11065 PF01180 Dihydroorotate dehydrogenase A9258_11070 PF05088 Bacterial NAD-glutamate dehydrogenase A9258_11080 PF11940 Domain of unknown function (DUF3458) Ig-like fold A9258_11080 PF01433 Peptidase family M1 domain A9258_11080 PF17432 Domain of unknown function (DUF3458_C) ARM repeats A9258_11085 PF17804 Tail specific protease N-terminal domain A9258_11085 PF03572 Peptidase family S41 A9258_11085 PF11818 C-terminal domain of tail specific protease (DUF3340) A9258_11085 PF00595 PDZ domain A9258_11090 PF04352 ProQ/FINO family A9258_11090 PF17516 ProQ C-terminal domain A9258_11095 PF13185 GAF domain A9258_11105 PF00115 Cytochrome C and Quinol oxidase polypeptide I A9258_11120 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP A9258_11120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A9258_11130 PF00403 Heavy-metal-associated domain A9258_11145 PF00027 Cyclic nucleotide-binding domain A9258_11145 PF13545 Crp-like helix-turn-helix domain A9258_11150 PF00582 Universal stress protein family A9258_11155 PF01171 PP-loop family A9258_11170 PF14497 Glutathione S-transferase, C-terminal domain A9258_11170 PF02798 Glutathione S-transferase, N-terminal domain A9258_11175 PF05025 RbsD / FucU transport protein family A9258_11180 PF00005 ABC transporter A9258_11185 PF02653 Branched-chain amino acid transport system / permease component A9258_11190 PF13407 Periplasmic binding protein domain A9258_11195 PF00294 pfkB family carbohydrate kinase A9258_11200 PF00356 Bacterial regulatory proteins, lacI family A9258_11215 PF02146 Sir2 family A9258_11230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_11230 PF00512 His Kinase A (phospho-acceptor) domain A9258_11230 PF00072 Response regulator receiver domain A9258_11230 PF09456 RcsC Alpha-Beta-Loop (ABL) A9258_11235 PF00216 Bacterial DNA-binding protein A9258_11240 PF03483 B3/4 domain A9258_11240 PF03484 tRNA synthetase B5 domain A9258_11240 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain A9258_11240 PF03147 Ferredoxin-fold anticodon binding domain A9258_11240 PF01588 Putative tRNA binding domain A9258_11245 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain A9258_11245 PF01409 tRNA synthetases class II core domain (F) A9258_11250 PF00453 Ribosomal protein L20 A9258_11255 PF01632 Ribosomal protein L35 A9258_11260 PF05198 Translation initiation factor IF-3, N-terminal domain A9258_11260 PF00707 Translation initiation factor IF-3, C-terminal domain A9258_11265 PF03129 Anticodon binding domain A9258_11265 PF02824 TGS domain A9258_11265 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A9258_11265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A9258_11275 PF04055 Radical SAM superfamily A9258_11280 PF03989 DNA gyrase C-terminal domain, beta-propeller A9258_11280 PF00521 DNA gyrase/topoisomerase IV, subunit A A9258_11290 PF13419 Haloacid dehalogenase-like hydrolase A9258_11295 PF00317 Ribonucleotide reductase, all-alpha domain A9258_11295 PF03477 ATP cone domain A9258_11295 PF02867 Ribonucleotide reductase, barrel domain A9258_11300 PF00268 Ribonucleotide reductase, small chain A9258_11305 PF00111 2Fe-2S iron-sulfur cluster binding domain A9258_11310 PF06725 3D domain A9258_11310 PF03562 MltA specific insert domain A9258_11315 PF06945 Protein of unknown function (DUF1289) A9258_11325 PF03613 PTS system mannose/fructose/sorbose family IID component A9258_11330 PF03609 PTS system sorbose-specific iic component A9258_11335 PF03830 PTS system sorbose subfamily IIB component A9258_11335 PF03610 PTS system fructose IIA component A9258_11350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family A9258_11350 PF00356 Bacterial regulatory proteins, lacI family A9258_11355 PF06560 Glucose-6-phosphate isomerase (GPI) A9258_11360 PF02378 Phosphotransferase system, EIIC A9258_11360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A9258_11365 PF00294 pfkB family carbohydrate kinase A9258_11370 PF00381 PTS HPr component phosphorylation site A9258_11370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A9258_11375 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family A9258_11375 PF00356 Bacterial regulatory proteins, lacI family A9258_11380 PF03222 Tryptophan/tyrosine permease family A9258_11395 PF00271 Helicase conserved C-terminal domain A9258_11395 PF00270 DEAD/DEAH box helicase A9258_11405 PF01264 Chorismate synthase A9258_11410 PF05175 Methyltransferase small domain A9258_11415 PF01713 Smr domain A9258_11425 PF00990 Diguanylate cyclase, GGDEF domain A9258_11425 PF08448 PAS fold A9258_11430 PF00300 Histidine phosphatase superfamily (branch 1) A9258_11455 PF03831 PhnA domain A9258_11455 PF08274 PhnA Zinc-Ribbon A9258_11470 PF02567 Phenazine biosynthesis-like protein A9258_11485 PF01327 Polypeptide deformylase A9258_11500 PF05036 Sporulation related domain A9258_11500 PF03330 Lytic transglycolase A9258_11505 PF16330 MukB hinge domain A9258_11505 PF04310 MukB N-terminal A9258_11510 PF04288 MukE-like family A9258_11515 PF03882 MukF winged-helix domain A9258_11515 PF17193 MukF C-terminal domain A9258_11515 PF17192 MukF middle domain A9258_11525 PF02698 DUF218 domain A9258_11530 PF00121 Triosephosphate isomerase A9258_11535 PF00365 Phosphofructokinase A9258_11540 PF01546 Peptidase family M20/M25/M40 A9258_11540 PF07687 Peptidase dimerisation domain A9258_11545 PF13419 Haloacid dehalogenase-like hydrolase A9258_11550 PF00883 Cytosol aminopeptidase family, catalytic domain A9258_11550 PF02789 Cytosol aminopeptidase family, N-terminal domain A9258_11570 PF00128 Alpha amylase, catalytic domain A9258_11570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A9258_11580 PF11398 Protein of unknown function (DUF2813) A9258_11585 PF14525 AraC-binding-like domain A9258_11585 PF12833 Helix-turn-helix domain A9258_11595 PF03466 LysR substrate binding domain A9258_11595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_11600 PF01925 Sulfite exporter TauE/SafE A9258_11610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A9258_11610 PF18029 Glyoxalase-like domain A9258_11615 PF07478 D-ala D-ala ligase C-terminus A9258_11615 PF01820 D-ala D-ala ligase N-terminus A9258_11625 PF00255 Glutathione peroxidase A9258_11630 PF00271 Helicase conserved C-terminal domain A9258_11630 PF00270 DEAD/DEAH box helicase A9258_11635 PF13673 Acetyltransferase (GNAT) domain A9258_11645 PF02694 Uncharacterised BCR, YnfA/UPF0060 family A9258_11655 PF01928 CYTH domain A9258_11665 PF00583 Acetyltransferase (GNAT) family A9258_11670 PF00465 Iron-containing alcohol dehydrogenase A9258_11675 PF03992 Antibiotic biosynthesis monooxygenase A9258_11680 PF08543 Phosphomethylpyrimidine kinase A9258_11700 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus A9258_11700 PF00561 alpha/beta hydrolase fold A9258_11705 PF01575 MaoC like domain A9258_11720 PF00005 ABC transporter A9258_11720 PF00664 ABC transporter transmembrane region A9258_11725 PF00664 ABC transporter transmembrane region A9258_11725 PF00005 ABC transporter A9258_11730 PF00512 His Kinase A (phospho-acceptor) domain A9258_11730 PF01627 Hpt domain A9258_11730 PF00072 Response regulator receiver domain A9258_11730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) A9258_11730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_11730 PF00672 HAMP domain A9258_11735 PF00085 Thioredoxin A9258_11740 PF00939 Sodium:sulfate symporter transmembrane region A9258_11745 PF00343 Carbohydrate phosphorylase A9258_11770 PF00425 chorismate binding enzyme A9258_11770 PF04715 Anthranilate synthase component I, N terminal region A9258_11775 PF00293 NUDIX domain A9258_11780 PF03222 Tryptophan/tyrosine permease family A9258_11785 PF00375 Sodium:dicarboxylate symporter family A9258_11790 PF00570 HRDC domain A9258_11790 PF16124 RecQ zinc-binding A9258_11790 PF09382 RQC domain A9258_11790 PF00270 DEAD/DEAH box helicase A9258_11790 PF00271 Helicase conserved C-terminal domain A9258_11795 PF06798 PrkA serine protein kinase C-terminal domain A9258_11795 PF08298 PrkA AAA domain A9258_11800 PF04285 Protein of unknown function (DUF444) A9258_11805 PF04293 SpoVR like protein A9258_11810 PF00392 Bacterial regulatory proteins, gntR family A9258_11810 PF07840 FadR C-terminal domain A9258_11815 PF06450 Bacterial Na+/H+ antiporter B (NhaB) A9258_11820 PF02600 Disulfide bond formation protein DsbB A9258_11825 PF09335 SNARE associated Golgi protein A9258_11835 PF00271 Helicase conserved C-terminal domain A9258_11835 PF04851 Type III restriction enzyme, res subunit A9258_11835 PF02151 UvrB/uvrC motif A9258_11835 PF12344 Ultra-violet resistance protein B A9258_11835 PF17757 UvrB interaction domain A9258_11845 PF06826 Predicted Permease Membrane Region A9258_11845 PF02080 TrkA-C domain A9258_11850 PF01464 Transglycosylase SLT domain A9258_11850 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_11865 PF01970 Tripartite tricarboxylate transporter TctA family A9258_11870 PF00072 Response regulator receiver domain A9258_11870 PF08279 HTH domain A9258_11870 PF12431 Transcriptional regulator A9258_11875 PF00989 PAS fold A9258_11875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_11875 PF17203 Single cache domain 3 A9258_11875 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain A9258_11880 PF01047 MarR family A9258_11880 PF00480 ROK family A9258_11885 PF00672 HAMP domain A9258_11885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_11885 PF17200 Single Cache domain 2 A9258_11890 PF02810 SEC-C motif A9258_11895 PF04324 BFD-like [2Fe-2S] binding domain A9258_11895 PF01266 FAD dependent oxidoreductase A9258_11900 PF00890 FAD binding domain A9258_11905 PF13183 4Fe-4S dicluster domain A9258_11905 PF02754 Cysteine-rich domain A9258_11920 PF02335 Cytochrome c552 A9258_11925 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) A9258_11925 PF13435 Cytochrome c554 and c-prime A9258_11930 PF13247 4Fe-4S dicluster domain A9258_11930 PF00037 4Fe-4S binding domain A9258_11935 PF03916 Polysulphide reductase, NrfD A9258_11940 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal A9258_11940 PF01578 Cytochrome C assembly protein A9258_11945 PF08534 Redoxin A9258_11950 PF03918 Cytochrome C biogenesis protein A9258_11955 PF00293 NUDIX domain A9258_11960 PF00768 D-alanyl-D-alanine carboxypeptidase A9258_11965 PF01212 Beta-eliminating lyase A9258_11970 PF04244 Deoxyribodipyrimidine photo-lyase-related protein A9258_11975 PF01266 FAD dependent oxidoreductase A9258_11985 PF07969 Amidohydrolase family A9258_11990 PF00478 IMP dehydrogenase / GMP reductase domain A9258_11990 PF00571 CBS domain A9258_12000 PF08267 Cobalamin-independent synthase, N-terminal domain A9258_12000 PF01717 Cobalamin-independent synthase, Catalytic domain A9258_12005 PF03466 LysR substrate binding domain A9258_12005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_12015 PF07715 TonB-dependent Receptor Plug Domain A9258_12015 PF00593 TonB dependent receptor A9258_12020 PF12833 Helix-turn-helix domain A9258_12025 PF00106 short chain dehydrogenase A9258_12030 PF03466 LysR substrate binding domain A9258_12030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_12035 PF13460 NAD(P)H-binding A9258_12045 PF01053 Cys/Met metabolism PLP-dependent enzyme A9258_12050 PF05193 Peptidase M16 inactive domain A9258_12050 PF00675 Insulinase (Peptidase family M16) A9258_12055 PF01118 Semialdehyde dehydrogenase, NAD binding domain A9258_12055 PF02774 Semialdehyde dehydrogenase, dimerisation domain A9258_12060 PF00893 Small Multidrug Resistance protein A9258_12065 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding A9258_12065 PF18381 YcaO cyclodehydratase C-terminal domain A9258_12070 PF01226 Formate/nitrite transporter A9258_12075 PF02901 Pyruvate formate lyase-like A9258_12075 PF01228 Glycine radical A9258_12085 PF00202 Aminotransferase class-III A9258_12090 PF00266 Aminotransferase class-V A9258_12095 PF00392 Bacterial regulatory proteins, gntR family A9258_12095 PF07702 UTRA domain A9258_12105 PF00005 ABC transporter A9258_12110 PF00528 Binding-protein-dependent transport system inner membrane component A9258_12115 PF01266 FAD dependent oxidoreductase A9258_12120 PF03692 Putative zinc- or iron-chelating domain A9258_12130 PF00549 CoA-ligase A9258_12130 PF02629 CoA binding domain A9258_12135 PF08442 ATP-grasp domain A9258_12135 PF00549 CoA-ligase A9258_12140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A9258_12140 PF02817 e3 binding domain A9258_12140 PF00364 Biotin-requiring enzyme A9258_12145 PF16870 2-oxoglutarate dehydrogenase C-terminal A9258_12145 PF02779 Transketolase, pyrimidine binding domain A9258_12145 PF16078 2-oxoglutarate dehydrogenase N-terminus A9258_12145 PF00676 Dehydrogenase E1 component A9258_12150 PF13085 2Fe-2S iron-sulfur cluster binding domain A9258_12155 PF00890 FAD binding domain A9258_12155 PF02910 Fumarate reductase flavoprotein C-term A9258_12160 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit A9258_12165 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit A9258_12170 PF00285 Citrate synthase, C-terminal domain A9258_12185 PF02801 Beta-ketoacyl synthase, C-terminal domain A9258_12185 PF00109 Beta-ketoacyl synthase, N-terminal domain A9258_12190 PF05430 S-adenosyl-L-methionine-dependent methyltransferase A9258_12190 PF01266 FAD dependent oxidoreductase A9258_12200 PF03606 C4-dicarboxylate anaerobic carrier A9258_12215 PF01863 Protein of unknown function DUF45 A9258_12230 PF01197 Ribosomal protein L31 A9258_12235 PF00444 Ribosomal protein L36 A9258_12240 PF02678 Pirin A9258_12240 PF05726 Pirin C-terminal cupin domain A9258_12245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_12245 PF03466 LysR substrate binding domain A9258_12250 PF02311 AraC-like ligand binding domain A9258_12250 PF12833 Helix-turn-helix domain A9258_12255 PF02653 Branched-chain amino acid transport system / permease component A9258_12260 PF00005 ABC transporter A9258_12265 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family A9258_12270 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A9258_12275 PF00596 Class II Aldolase and Adducin N-terminal domain A9258_12280 PF02610 L-arabinose isomerase A9258_12280 PF11762 L-arabinose isomerase C-terminal domain A9258_12285 PF08411 Exonuclease C-terminal A9258_12285 PF00929 Exonuclease A9258_12300 PF03788 LrgA family A9258_12305 PF04172 LrgB-like family A9258_12310 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region A9258_12310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A9258_12315 PF00501 AMP-binding enzyme A9258_12320 PF08891 YfcL protein A9258_12330 PF03741 Integral membrane protein TerC family A9258_12335 PF00691 OmpA family A9258_12340 PF00990 Diguanylate cyclase, GGDEF domain A9258_12340 PF17152 Periplasmic sensor domain A9258_12345 PF13689 YfiR/HmsC-like A9258_12350 PF18024 Helix-turn-helix domain A9258_12350 PF00158 Sigma-54 interaction domain A9258_12355 PF01329 Pterin 4 alpha carbinolamine dehydratase A9258_12360 PF01329 Pterin 4 alpha carbinolamine dehydratase A9258_12365 PF00351 Biopterin-dependent aromatic amino acid hydroxylase A9258_12370 PF05128 Domain of unknown function (DUF697) A9258_12375 PF04317 YcjX-like family, DUF463 A9258_12385 PF06667 Phage shock protein B A9258_12390 PF04012 PspA/IM30 family A9258_12395 PF00158 Sigma-54 interaction domain A9258_12395 PF02954 Bacterial regulatory protein, Fis family A9258_12400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_12405 PF00528 Binding-protein-dependent transport system inner membrane component A9258_12410 PF12911 N-terminal TM domain of oligopeptide transport permease C A9258_12410 PF00528 Binding-protein-dependent transport system inner membrane component A9258_12415 PF00005 ABC transporter A9258_12415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_12420 PF00005 ABC transporter A9258_12425 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) A9258_12430 PF00156 Phosphoribosyl transferase domain A9258_12435 PF02674 Colicin V production protein A9258_12440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A9258_12440 PF02403 Seryl-tRNA synthetase N-terminal domain A9258_12450 PF12002 MgsA AAA+ ATPase C terminal A9258_12450 PF00004 ATPase family associated with various cellular activities (AAA) A9258_12450 PF16193 AAA C-terminal domain A9258_12455 PF03548 Outer membrane lipoprotein carrier protein LolA A9258_12460 PF17854 FtsK alpha domain A9258_12460 PF13491 4TM region of DNA translocase FtsK/SpoIIIE A9258_12460 PF09397 Ftsk gamma domain A9258_12460 PF01580 FtsK/SpoIIIE family A9258_12465 PF01037 Lrp/AsnC ligand binding domain A9258_12470 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_12475 PF17158 Membrane-associated sensor, integral membrane domain A9258_12475 PF00990 Diguanylate cyclase, GGDEF domain A9258_12480 PF05433 Glycine zipper 2TM domain A9258_12485 PF03588 Leucyl/phenylalanyl-tRNA protein transferase A9258_12490 PF04377 Arginine-tRNA-protein transferase, C terminus A9258_12490 PF04376 Arginine-tRNA-protein transferase, N terminus A9258_12495 PF01176 Translation initiation factor 1A / IF-1 A9258_12500 PF10431 C-terminal, D2-small domain, of ClpB protein A9258_12500 PF02861 Clp amino terminal domain, pathogenicity island component A9258_12500 PF00004 ATPase family associated with various cellular activities (AAA) A9258_12500 PF07724 AAA domain (Cdc48 subfamily) A9258_12500 PF17871 AAA lid domain A9258_12505 PF02617 ATP-dependent Clp protease adaptor protein ClpS A9258_12510 PF00313 'Cold-shock' DNA-binding domain A9258_12515 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain A9258_12515 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain A9258_12545 PF04717 Type VI secretion system, phage-baseplate injector A9258_12550 PF05638 Type VI secretion system effector, Hcp A9258_12565 PF10722 Putative bacterial sensory transduction regulator A9258_12575 PF00265 Thymidine kinase A9258_12580 PF03553 Na+/H+ antiporter family A9258_12585 PF00816 H-NS histone family A9258_12590 PF01923 Cobalamin adenosyltransferase A9258_12595 PF12843 Putative quorum-sensing-regulated virulence factor A9258_12600 PF04055 Radical SAM superfamily A9258_12605 PF06508 Queuosine biosynthesis protein QueC A9258_12620 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family A9258_12625 PF18073 Rubredoxin metal binding domain A9258_12635 PF00216 Bacterial DNA-binding protein A9258_12640 PF00575 S1 RNA binding domain A9258_12645 PF02224 Cytidylate kinase A9258_12650 PF00925 GTP cyclohydrolase II A9258_12655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_12655 PF03466 LysR substrate binding domain A9258_12660 PF03466 LysR substrate binding domain A9258_12660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_12665 PF07690 Major Facilitator Superfamily A9258_12680 PF00881 Nitroreductase family A9258_12685 PF13188 PAS domain A9258_12685 PF00563 EAL domain A9258_12685 PF00990 Diguanylate cyclase, GGDEF domain A9258_12685 PF03707 Bacterial signalling protein N terminal repeat A9258_12695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_12695 PF03466 LysR substrate binding domain A9258_12700 PF00072 Response regulator receiver domain A9258_12710 PF01212 Beta-eliminating lyase A9258_12725 PF00248 Aldo/keto reductase family A9258_12730 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) A9258_12740 PF03411 Penicillin-insensitive murein endopeptidase A9258_12750 PF04536 TPM domain A9258_12765 PF01618 MotA/TolQ/ExbB proton channel family A9258_12770 PF13677 Membrane MotB of proton-channel complex MotA/MotB A9258_12770 PF00691 OmpA family A9258_12775 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 A9258_12780 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A9258_12785 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A9258_12785 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A9258_12795 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A9258_12795 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A9258_12800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A9258_12800 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A9258_12800 PF00384 Molybdopterin oxidoreductase A9258_12805 PF00146 NADH dehydrogenase A9258_12810 PF12838 4Fe-4S dicluster domain A9258_12815 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 A9258_12820 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A9258_12825 PF00361 Proton-conducting membrane transporter A9258_12825 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A9258_12830 PF00361 Proton-conducting membrane transporter A9258_12835 PF00361 Proton-conducting membrane transporter A9258_12845 PF02769 AIR synthase related protein, C-terminal domain A9258_12845 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal A9258_12845 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain A9258_12850 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_12850 PF01464 Transglycosylase SLT domain A9258_12855 PF07191 zinc-ribbons A9258_12860 PF01926 50S ribosome-binding GTPase A9258_12860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal A9258_12865 PF13360 PQQ-like domain A9258_12870 PF09976 Tetratricopeptide repeat-like domain A9258_12875 PF03129 Anticodon binding domain A9258_12875 PF13393 Histidyl-tRNA synthetase A9258_12880 PF04551 GcpE protein A9258_12885 PF13464 Domain of unknown function (DUF4115) A9258_12895 PF04055 Radical SAM superfamily A9258_12900 PF00334 Nucleoside diphosphate kinase A9258_12905 PF00883 Cytosol aminopeptidase family, catalytic domain A9258_12905 PF12404 Peptidase A9258_12910 PF12404 Peptidase A9258_12910 PF00883 Cytosol aminopeptidase family, catalytic domain A9258_12915 PF00111 2Fe-2S iron-sulfur cluster binding domain A9258_12920 PF00012 Hsp70 protein A9258_12925 PF07743 HSCB C-terminal oligomerisation domain A9258_12930 PF01521 Iron-sulphur cluster biosynthesis A9258_12935 PF01592 NifU-like N terminal domain A9258_12940 PF00266 Aminotransferase class-V A9258_12945 PF02082 Transcriptional regulator A9258_12950 PF00588 SpoU rRNA Methylase family A9258_12975 PF13181 Tetratricopeptide repeat A9258_12975 PF07719 Tetratricopeptide repeat A9258_12985 PF07549 SecD/SecF GG Motif A9258_12985 PF02355 Protein export membrane protein A9258_12990 PF07549 SecD/SecF GG Motif A9258_12990 PF02355 Protein export membrane protein A9258_12990 PF13721 SecD export protein N-terminal TM region A9258_12995 PF02699 Preprotein translocase subunit A9258_13000 PF01702 Queuine tRNA-ribosyltransferase A9258_13005 PF02547 Queuosine biosynthesis protein A9258_13010 PF00571 CBS domain A9258_13015 PF00578 AhpC/TSA family A9258_13015 PF10417 C-terminal domain of 1-Cys peroxiredoxin A9258_13020 PF13192 Thioredoxin domain A9258_13020 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_13025 PF07690 Major Facilitator Superfamily A9258_13035 PF08241 Methyltransferase domain A9258_13040 PF03960 ArsC family A9258_13045 PF01758 Sodium Bile acid symporter family A9258_13050 PF01022 Bacterial regulatory protein, arsR family A9258_13055 PF02347 Glycine cleavage system P-protein A9258_13060 PF01597 Glycine cleavage H-protein A9258_13065 PF01571 Aminomethyltransferase folate-binding domain A9258_13065 PF08669 Glycine cleavage T-protein C-terminal barrel domain A9258_13070 PF01494 FAD binding domain A9258_13075 PF01494 FAD binding domain A9258_13080 PF03695 Uncharacterised protein family (UPF0149) A9258_13085 PF05164 Cell division protein ZapA A9258_13095 PF07690 Major Facilitator Superfamily A9258_13100 PF00043 Glutathione S-transferase, C-terminal domain A9258_13100 PF02798 Glutathione S-transferase, N-terminal domain A9258_13110 PF00459 Inositol monophosphatase family A9258_13115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_13115 PF00672 HAMP domain A9258_13120 PF02535 ZIP Zinc transporter A9258_13130 PF01048 Phosphorylase superfamily A9258_13140 PF01497 Periplasmic binding protein A9258_13145 PF02719 Polysaccharide biosynthesis protein A9258_13150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family A9258_13165 PF00202 Aminotransferase class-III A9258_13180 PF03102 NeuB family A9258_13180 PF08666 SAF domain A9258_13200 PF02561 Flagellar protein FliS A9258_13205 PF02465 Flagellar hook-associated protein 2 N-terminus A9258_13205 PF07195 Flagellar hook-associated protein 2 C-terminus A9258_13205 PF07196 Flagellin hook IN motif A9258_13215 PF00669 Bacterial flagellin N-terminal helical region A9258_13215 PF00700 Bacterial flagellin C-terminal helical region A9258_13215 PF07196 Flagellin hook IN motif A9258_13220 PF01527 Transposase A9258_13230 PF00700 Bacterial flagellin C-terminal helical region A9258_13230 PF00669 Bacterial flagellin N-terminal helical region A9258_13230 PF07196 Flagellin hook IN motif A9258_13235 PF07196 Flagellin hook IN motif A9258_13235 PF00669 Bacterial flagellin N-terminal helical region A9258_13235 PF00700 Bacterial flagellin C-terminal helical region A9258_13240 PF03458 UPF0126 domain A9258_13250 PF02926 THUMP domain A9258_13250 PF02568 Thiamine biosynthesis protein (ThiI) A9258_13260 PF00905 Penicillin binding protein transpeptidase domain A9258_13260 PF06832 Penicillin-Binding Protein C-terminus Family A9258_13260 PF00912 Transglycosylase A9258_13265 PF17962 Bacterial macroglobulin domain 6 A9258_13265 PF01835 MG2 domain A9258_13265 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain A9258_13265 PF00207 Alpha-2-macroglobulin family A9258_13265 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain A9258_13265 PF07703 Alpha-2-macroglobulin bait region domain A9258_13265 PF11974 Bacterial alpha-2-macroglobulin MG3 domain A9258_13265 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain A9258_13265 PF07678 A-macroglobulin TED domain A9258_13270 PF07687 Peptidase dimerisation domain A9258_13270 PF01546 Peptidase family M20/M25/M40 A9258_13275 PF01594 AI-2E family transporter A9258_13280 PF02321 Outer membrane efflux protein A9258_13285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_13285 PF00529 HlyD membrane-fusion protein of T1SS A9258_13300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A9258_13300 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_13305 PF00990 Diguanylate cyclase, GGDEF domain A9258_13305 PF03707 Bacterial signalling protein N terminal repeat A9258_13305 PF00563 EAL domain A9258_13310 PF04055 Radical SAM superfamily A9258_13320 PF00528 Binding-protein-dependent transport system inner membrane component A9258_13325 PF00528 Binding-protein-dependent transport system inner membrane component A9258_13330 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_13335 PF00005 ABC transporter A9258_13340 PF03956 Lysine exporter LysO A9258_13345 PF01979 Amidohydrolase family A9258_13350 PF04336 Acyl carrier protein phosphodiesterase A9258_13365 PF03960 ArsC family A9258_13370 PF00578 AhpC/TSA family A9258_13375 PF13181 Tetratricopeptide repeat A9258_13375 PF01435 Peptidase family M48 A9258_13380 PF01206 Sulfurtransferase TusA A9258_13385 PF01594 AI-2E family transporter A9258_13395 PF00561 alpha/beta hydrolase fold A9258_13400 PF03976 Polyphosphate kinase 2 (PPK2) A9258_13405 PF00005 ABC transporter A9258_13405 PF08402 TOBE domain A9258_13410 PF00528 Binding-protein-dependent transport system inner membrane component A9258_13415 PF00528 Binding-protein-dependent transport system inner membrane component A9258_13415 PF14785 Maltose transport system permease protein MalF P2 domain A9258_13420 PF01547 Bacterial extracellular solute-binding protein A9258_13425 PF04245 37-kD nucleoid-associated bacterial protein A9258_13430 PF07208 Protein of unknown function (DUF1414) A9258_13435 PF00884 Sulfatase A9258_13435 PF11893 Domain of unknown function (DUF3413) A9258_13440 PF00593 TonB dependent receptor A9258_13440 PF07715 TonB-dependent Receptor Plug Domain A9258_13445 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A9258_13445 PF00326 Prolyl oligopeptidase family A9258_13465 PF03974 Ecotin A9258_13470 PF04219 Protein of unknown function, DUF A9258_13475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_13475 PF03466 LysR substrate binding domain A9258_13480 PF01817 Chorismate mutase type II A9258_13480 PF02153 Prephenate dehydrogenase A9258_13485 PF00793 DAHP synthetase I family A9258_13490 PF03009 Glycerophosphoryl diester phosphodiesterase family A9258_13495 PF01266 FAD dependent oxidoreductase A9258_13495 PF16901 C-terminal domain of alpha-glycerophosphate oxidase A9258_13500 PF08220 DeoR-like helix-turn-helix domain A9258_13500 PF00455 DeoR C terminal sensor domain A9258_13505 PF07690 Major Facilitator Superfamily A9258_13510 PF00230 Major intrinsic protein A9258_13515 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A9258_13515 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A9258_13520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_13520 PF03466 LysR substrate binding domain A9258_13540 PF00248 Aldo/keto reductase family A9258_13545 PF07690 Major Facilitator Superfamily A9258_13555 PF02322 Cytochrome bd terminal oxidase subunit II A9258_13560 PF01654 Cytochrome bd terminal oxidase subunit I A9258_13565 PF00392 Bacterial regulatory proteins, gntR family A9258_13565 PF00155 Aminotransferase class I and II A9258_13575 PF04391 Protein of unknown function (DUF533) A9258_13590 PF10689 Protein of unknown function (DUF2496) A9258_13600 PF07690 Major Facilitator Superfamily A9258_13605 PF03466 LysR substrate binding domain A9258_13605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_13615 PF07690 Major Facilitator Superfamily A9258_13620 PF01479 S4 domain A9258_13620 PF00849 RNA pseudouridylate synthase A9258_13625 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase A9258_13625 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain A9258_13645 PF00271 Helicase conserved C-terminal domain A9258_13645 PF04851 Type III restriction enzyme, res subunit A9258_13650 PF00300 Histidine phosphatase superfamily (branch 1) A9258_13655 PF13309 HTH domain A9258_13655 PF08348 YheO-like PAS domain A9258_13660 PF03313 Serine dehydratase alpha chain A9258_13665 PF01042 Endoribonuclease L-PSP A9258_13675 PF00672 HAMP domain A9258_13675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_13690 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A9258_13690 PF17944 Arginine decarboxylase C-terminal helical extension A9258_13690 PF17810 Arginine decarboxylase helical bundle domain A9258_13695 PF01546 Peptidase family M20/M25/M40 A9258_13695 PF07687 Peptidase dimerisation domain A9258_13720 PF04264 YceI-like domain A9258_13725 PF03466 LysR substrate binding domain A9258_13725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_13735 PF01268 Formate--tetrahydrofolate ligase A9258_13740 PF17200 Single Cache domain 2 A9258_13740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_13740 PF00672 HAMP domain A9258_13745 PF01227 GTP cyclohydrolase I A9258_13750 PF00994 Probable molybdopterin binding domain A9258_13750 PF03454 MoeA C-terminal region (domain IV) A9258_13750 PF03453 MoeA N-terminal region (domain I and II) A9258_13755 PF00899 ThiF family A9258_13760 PF00561 alpha/beta hydrolase fold A9258_13765 PF00005 ABC transporter A9258_13765 PF03459 TOBE domain A9258_13770 PF00528 Binding-protein-dependent transport system inner membrane component A9258_13780 PF02391 MoaE protein A9258_13785 PF02597 ThiS family A9258_13790 PF01967 MoaC family A9258_13795 PF00994 Probable molybdopterin binding domain A9258_13800 PF03264 NapC/NirT cytochrome c family, N-terminal region A9258_13805 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) A9258_13810 PF12801 4Fe-4S binding domain A9258_13810 PF13237 4Fe-4S dicluster domain A9258_13815 PF12800 4Fe-4S binding domain A9258_13815 PF12838 4Fe-4S dicluster domain A9258_13820 PF10518 TAT (twin-arginine translocation) pathway signal sequence A9258_13820 PF01568 Molydopterin dinucleotide binding domain A9258_13820 PF00384 Molybdopterin oxidoreductase A9258_13820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A9258_13830 PF13187 4Fe-4S dicluster domain A9258_13830 PF00037 4Fe-4S binding domain A9258_13830 PF12800 4Fe-4S binding domain A9258_13835 PF04055 Radical SAM superfamily A9258_13835 PF06463 Molybdenum Cofactor Synthesis C A9258_13840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_13840 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term A9258_13840 PF07730 Histidine kinase A9258_13840 PF00672 HAMP domain A9258_13845 PF00072 Response regulator receiver domain A9258_13845 PF00196 Bacterial regulatory proteins, luxR family A9258_13855 PF00072 Response regulator receiver domain A9258_13855 PF17149 Periplasmic sensor domain found in signal transduction proteins A9258_13855 PF00672 HAMP domain A9258_13855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_13855 PF01627 Hpt domain A9258_13855 PF00512 His Kinase A (phospho-acceptor) domain A9258_13865 PF01933 Uncharacterised protein family UPF0052 A9258_13875 PF13230 Glutamine amidotransferases class-II A9258_13880 PF13580 SIS domain A9258_13885 PF02770 Acyl-CoA dehydrogenase, middle domain A9258_13885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A9258_13885 PF09317 Domain of unknown function (DUF1974) A9258_13885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A9258_13890 PF11849 Domain of unknown function (DUF3369) A9258_13900 PF00929 Exonuclease A9258_13905 PF00075 RNase H A9258_13910 PF08241 Methyltransferase domain A9258_13915 PF16123 Hydroxyacylglutathione hydrolase C-terminus A9258_13915 PF00753 Metallo-beta-lactamase superfamily A9258_13920 PF01464 Transglycosylase SLT domain A9258_13920 PF01476 LysM domain A9258_13925 PF03372 Endonuclease/Exonuclease/phosphatase family A9258_13935 PF03061 Thioesterase superfamily A9258_13945 PF00356 Bacterial regulatory proteins, lacI family A9258_13950 PF14718 Soluble lytic murein transglycosylase L domain A9258_13950 PF01464 Transglycosylase SLT domain A9258_13955 PF00563 EAL domain A9258_13955 PF03707 Bacterial signalling protein N terminal repeat A9258_13955 PF00990 Diguanylate cyclase, GGDEF domain A9258_13960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein A9258_13980 PF04357 TamB, inner membrane protein subunit of TAM complex A9258_13985 PF07244 Surface antigen variable number repeat A9258_13985 PF01103 Surface antigen A9258_13985 PF17243 POTRA domain TamA domain 1 A9258_14000 PF01625 Peptide methionine sulfoxide reductase A9258_14010 PF02627 Carboxymuconolactone decarboxylase family A9258_14015 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_14015 PF00403 Heavy-metal-associated domain A9258_14015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A9258_14020 PF13416 Bacterial extracellular solute-binding protein A9258_14030 PF00005 ABC transporter A9258_14035 PF01066 CDP-alcohol phosphatidyltransferase A9258_14040 PF13406 Transglycosylase SLT domain A9258_14045 PF01047 MarR family A9258_14055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A9258_14055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A9258_14055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A9258_14055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A9258_14060 PF17206 SeqA protein N-terminal domain A9258_14060 PF03925 SeqA protein C-terminal domain A9258_14065 PF12697 Alpha/beta hydrolase family A9258_14075 PF01402 Ribbon-helix-helix protein, copG family A9258_14080 PF00258 Flavodoxin A9258_14090 PF01475 Ferric uptake regulator family A9258_14095 PF00749 tRNA synthetases class I (E and Q), catalytic domain A9258_14095 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain A9258_14100 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain A9258_14100 PF02838 Glycosyl hydrolase family 20, domain 2 A9258_14100 PF03173 Putative carbohydrate binding domain A9258_14100 PF00728 Glycosyl hydrolase family 20, catalytic domain A9258_14105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 A9258_14105 PF00367 phosphotransferase system, EIIB A9258_14105 PF02378 Phosphotransferase system, EIIC A9258_14110 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase A9258_14115 PF01979 Amidohydrolase family A9258_14120 PF01047 MarR family A9258_14120 PF00480 ROK family A9258_14125 PF00884 Sulfatase A9258_14125 PF08019 Phosphoethanolamine transferase EptA/EptB A9258_14130 PF01709 Transcriptional regulator A9258_14135 PF01336 OB-fold nucleic acid binding domain A9258_14135 PF00152 tRNA synthetases class II (D, K and N) A9258_14135 PF02938 GAD domain A9258_14140 PF01904 Protein of unknown function DUF72 A9258_14145 PF13649 Methyltransferase domain A9258_14150 PF08003 Protein of unknown function (DUF1698) A9258_14170 PF10417 C-terminal domain of 1-Cys peroxiredoxin A9258_14170 PF00578 AhpC/TSA family A9258_14175 PF03466 LysR substrate binding domain A9258_14175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_14180 PF07968 Leukocidin/Hemolysin toxin family A9258_14180 PF12563 Hemolytic toxin N terminal A9258_14185 PF00877 NlpC/P60 family A9258_14195 PF00171 Aldehyde dehydrogenase family A9258_14200 PF00440 Bacterial regulatory proteins, tetR family A9258_14200 PF08359 YsiA-like protein, C-terminal region A9258_14210 PF00465 Iron-containing alcohol dehydrogenase A9258_14220 PF00291 Pyridoxal-phosphate dependent enzyme A9258_14240 PF01554 MatE A9258_14260 PF01804 Penicillin amidase A9258_14265 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase A9258_14265 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg A9258_14265 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II A9258_14265 PF10371 Domain of unknown function A9258_14265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A9258_14270 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_14270 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A9258_14270 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster A9258_14275 PF00111 2Fe-2S iron-sulfur cluster binding domain A9258_14275 PF03473 MOSC domain A9258_14275 PF03476 MOSC N-terminal beta barrel domain A9258_14275 PF00111 2Fe-2S iron-sulfur cluster binding domain A9258_14275 PF03473 MOSC domain A9258_14275 PF03476 MOSC N-terminal beta barrel domain A9258_14280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_14280 PF08447 PAS fold A9258_14280 PF13426 PAS domain A9258_14285 PF01435 Peptidase family M48 A9258_14295 PF12697 Alpha/beta hydrolase family A9258_14295 PF08241 Methyltransferase domain A9258_14300 PF00155 Aminotransferase class I and II A9258_14305 PF04055 Radical SAM superfamily A9258_14305 PF06968 Biotin and Thiamin Synthesis associated domain A9258_14325 PF01336 OB-fold nucleic acid binding domain A9258_14325 PF00152 tRNA synthetases class II (D, K and N) A9258_14330 PF03605 Anaerobic c4-dicarboxylate membrane transporter A9258_14340 PF01546 Peptidase family M20/M25/M40 A9258_14340 PF07687 Peptidase dimerisation domain A9258_14345 PF03606 C4-dicarboxylate anaerobic carrier A9258_14355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_14355 PF03466 LysR substrate binding domain A9258_14360 PF03960 ArsC family A9258_14365 PF07687 Peptidase dimerisation domain A9258_14365 PF01546 Peptidase family M20/M25/M40 A9258_14370 PF02557 D-alanyl-D-alanine carboxypeptidase A9258_14375 PF03471 Transporter associated domain A9258_14375 PF00999 Sodium/hydrogen exchanger family A9258_14375 PF02080 TrkA-C domain A9258_14385 PF03471 Transporter associated domain A9258_14385 PF02080 TrkA-C domain A9258_14385 PF00999 Sodium/hydrogen exchanger family A9258_14395 PF01810 LysE type translocator A9258_14400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_14400 PF00672 HAMP domain A9258_14405 PF07509 Protein of unknown function (DUF1523) A9258_14420 PF01156 Inosine-uridine preferring nucleoside hydrolase A9258_14425 PF00849 RNA pseudouridylate synthase A9258_14430 PF01048 Phosphorylase superfamily A9258_14435 PF00465 Iron-containing alcohol dehydrogenase A9258_14470 PF00437 Type II/IV secretion system protein A9258_14485 PF13629 Pilus formation protein N terminal region A9258_14485 PF04972 BON domain A9258_14485 PF00263 Bacterial type II and III secretion system protein A9258_14515 PF04355 SmpA / OmlA family A9258_14520 PF13460 NAD(P)H-binding A9258_14530 PF03364 Polyketide cyclase / dehydrase and lipid transport A9258_14535 PF01668 SmpB protein A9258_14545 PF04851 Type III restriction enzyme, res subunit A9258_14545 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) A9258_14545 PF08463 EcoEI R protein C-terminal A9258_14545 PF00271 Helicase conserved C-terminal domain A9258_14620 PF10124 Mu-like prophage major head subunit gpT A9258_14625 PF10123 Mu-like prophage I protein A9258_14645 PF06074 Protein of unknown function (DUF935) A9258_14650 PF03237 Terminase-like family A9258_14655 PF11985 Protein of unknown function (DUF3486) A9258_14660 PF08461 Ribonuclease R winged-helix domain A9258_14695 PF08765 Mor transcription activator family A9258_14765 PF08463 EcoEI R protein C-terminal A9258_14765 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) A9258_14765 PF04851 Type III restriction enzyme, res subunit A9258_14765 PF00271 Helicase conserved C-terminal domain A9258_14770 PF12161 HsdM N-terminal domain A9258_14770 PF02384 N-6 DNA Methylase A9258_14775 PF01420 Type I restriction modification DNA specificity domain A9258_14805 PF03466 LysR substrate binding domain A9258_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_14810 PF02447 GntP family permease A9258_14815 PF00291 Pyridoxal-phosphate dependent enzyme A9258_14820 PF00180 Isocitrate/isopropylmalate dehydrogenase A9258_14825 PF12833 Helix-turn-helix domain A9258_14830 PF01238 Phosphomannose isomerase type I A9258_14850 PF00155 Aminotransferase class I and II A9258_14855 PF00367 phosphotransferase system, EIIB A9258_14855 PF02378 Phosphotransferase system, EIIC A9258_14860 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family A9258_14860 PF00356 Bacterial regulatory proteins, lacI family A9258_14875 PF00583 Acetyltransferase (GNAT) family A9258_14895 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A9258_14895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A9258_14895 PF02378 Phosphotransferase system, EIIC A9258_14900 PF07690 Major Facilitator Superfamily A9258_14905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A9258_14915 PF00849 RNA pseudouridylate synthase A9258_14920 PF00293 NUDIX domain A9258_14930 PF04356 Protein of unknown function (DUF489) A9258_14935 PF00206 Lyase A9258_14935 PF08328 Adenylosuccinate lyase C-terminal A9258_14940 PF08007 Cupin superfamily protein A9258_14950 PF13508 Acetyltransferase (GNAT) domain A9258_14960 PF02798 Glutathione S-transferase, N-terminal domain A9258_14965 PF01243 Pyridoxamine 5'-phosphate oxidase A9258_14965 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region A9258_14980 PF01029 NusB family A9258_14980 PF01189 16S rRNA methyltransferase RsmB/F A9258_14985 PF00462 Glutaredoxin A9258_14990 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain A9258_14990 PF02777 Iron/manganese superoxide dismutases, C-terminal domain A9258_14995 PF04333 MlaA lipoprotein A9258_15000 PF03918 Cytochrome C biogenesis protein A9258_15005 PF03918 Cytochrome C biogenesis protein A9258_15010 PF08534 Redoxin A9258_15015 PF01578 Cytochrome C assembly protein A9258_15015 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal A9258_15020 PF03100 CcmE A9258_15025 PF04995 Heme exporter protein D (CcmD) A9258_15030 PF01578 Cytochrome C assembly protein A9258_15035 PF03379 CcmB protein A9258_15040 PF00005 ABC transporter A9258_15050 PF01584 CheW-like domain A9258_15060 PF13614 AAA domain A9258_15065 PF13677 Membrane MotB of proton-channel complex MotA/MotB A9258_15065 PF00691 OmpA family A9258_15070 PF01618 MotA/TolQ/ExbB proton channel family A9258_15075 PF00072 Response regulator receiver domain A9258_15075 PF01339 CheB methylesterase A9258_15080 PF07194 P2 response regulator binding domain A9258_15080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_15080 PF02895 Signal transducing histidine kinase, homodimeric domain A9258_15080 PF01584 CheW-like domain A9258_15080 PF01627 Hpt domain A9258_15085 PF04344 Chemotaxis phosphatase, CheZ A9258_15090 PF00072 Response regulator receiver domain A9258_15095 PF04542 Sigma-70 region 2 A9258_15095 PF04539 Sigma-70 region 3 A9258_15095 PF04545 Sigma-70, region 4 A9258_15100 PF10609 NUBPL iron-transfer P-loop NTPase A9258_15105 PF00448 SRP54-type protein, GTPase domain A9258_15110 PF00771 FHIPEP family A9258_15115 PF01312 FlhB HrpN YscU SpaS Family A9258_15120 PF01311 Bacterial export proteins, family 1 A9258_15125 PF01313 Bacterial export proteins, family 3 A9258_15130 PF00813 FliP family A9258_15135 PF04347 Flagellar biosynthesis protein, FliO A9258_15140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A9258_15145 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A9258_15145 PF02154 Flagellar motor switch protein FliM A9258_15165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A9258_15165 PF18269 T3SS EscN ATPase C-terminal domain A9258_15175 PF01706 FliG C-terminal domain A9258_15175 PF14842 FliG N-terminal domain A9258_15175 PF14841 FliG middle domain A9258_15180 PF01514 Secretory protein of YscJ/FliF family A9258_15180 PF08345 Flagellar M-ring protein C-terminal A9258_15185 PF02049 Flagellar hook-basal body complex protein FliE A9258_15195 PF00072 Response regulator receiver domain A9258_15200 PF04055 Radical SAM superfamily A9258_15200 PF18693 TRAM domain A9258_15200 PF00919 Uncharacterized protein family UPF0004 A9258_15210 PF11647 Membrane Localization Domain A9258_15210 PF07634 RtxA repeat A9258_15210 PF11713 Peptidase C80 family A9258_15210 PF16671 Actin cross-linking domain A9258_15210 PF12146 Serine aminopeptidase, S33 A9258_15225 PF00664 ABC transporter transmembrane region A9258_15225 PF00005 ABC transporter A9258_15225 PF03412 Peptidase C39 family A9258_15235 PF00005 ABC transporter A9258_15235 PF03412 Peptidase C39 family A9258_15235 PF00664 ABC transporter transmembrane region A9258_15240 PF00072 Response regulator receiver domain A9258_15240 PF00486 Transcriptional regulatory protein, C terminal A9258_15250 PF02685 Glucokinase A9258_15255 PF01418 Helix-turn-helix domain, rpiR family A9258_15255 PF01380 SIS domain A9258_15260 PF00224 Pyruvate kinase, barrel domain A9258_15260 PF02887 Pyruvate kinase, alpha/beta domain A9258_15270 PF00873 AcrB/AcrD/AcrF family A9258_15275 PF02770 Acyl-CoA dehydrogenase, middle domain A9258_15275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A9258_15275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A9258_15275 PF09317 Domain of unknown function (DUF1974) A9258_15280 PF00440 Bacterial regulatory proteins, tetR family A9258_15300 PF09588 YqaJ-like viral recombinase domain A9258_15325 PF01527 Transposase A9258_15330 PF13276 HTH-like domain A9258_15330 PF00665 Integrase core domain A9258_15360 PF02463 RecF/RecN/SMC N terminal domain A9258_15380 PF12161 HsdM N-terminal domain A9258_15380 PF02384 N-6 DNA Methylase A9258_15395 PF00717 Peptidase S24-like A9258_15400 PF11798 IMS family HHH motif A9258_15400 PF11799 impB/mucB/samB family C-terminal domain A9258_15400 PF00817 impB/mucB/samB family A9258_15400 PF13438 Domain of unknown function (DUF4113) A9258_15405 PF00271 Helicase conserved C-terminal domain A9258_15420 PF13737 Transposase DDE domain A9258_15425 PF00384 Molybdopterin oxidoreductase A9258_15430 PF02634 FdhD/NarQ family A9258_15435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_15435 PF03466 LysR substrate binding domain A9258_15455 PF00936 BMC domain A9258_15460 PF00936 BMC domain A9258_15465 PF00936 BMC domain A9258_15470 PF00171 Aldehyde dehydrogenase family A9258_15470 PF00465 Iron-containing alcohol dehydrogenase A9258_15480 PF00465 Iron-containing alcohol dehydrogenase A9258_15480 PF00171 Aldehyde dehydrogenase family A9258_15485 PF01228 Glycine radical A9258_15485 PF02901 Pyruvate formate lyase-like A9258_15490 PF13187 4Fe-4S dicluster domain A9258_15490 PF04055 Radical SAM superfamily A9258_15495 PF00936 BMC domain A9258_15500 PF06130 Phosphate propanoyltransferase A9258_15510 PF00893 Small Multidrug Resistance protein A9258_15515 PF00893 Small Multidrug Resistance protein A9258_15545 PF04074 YhcH/YjgK/YiaL A9258_15550 PF00474 Sodium:solute symporter family A9258_15555 PF00480 ROK family A9258_15560 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase A9258_15565 PF01418 Helix-turn-helix domain, rpiR family A9258_15565 PF01380 SIS domain A9258_15570 PF00701 Dihydrodipicolinate synthetase family A9258_15575 PF00141 Peroxidase A9258_15580 PF08220 DeoR-like helix-turn-helix domain A9258_15580 PF00455 DeoR C terminal sensor domain A9258_15585 PF07690 Major Facilitator Superfamily A9258_15590 PF07882 L-fucose isomerase, second N-terminal domain A9258_15590 PF02952 L-fucose isomerase, C-terminal domain A9258_15590 PF07881 L-fucose isomerase, first N-terminal domain A9258_15595 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A9258_15595 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A9258_15605 PF05025 RbsD / FucU transport protein family A9258_15610 PF00465 Iron-containing alcohol dehydrogenase A9258_15615 PF00005 ABC transporter A9258_15615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A9258_15620 PF12911 N-terminal TM domain of oligopeptide transport permease C A9258_15620 PF00528 Binding-protein-dependent transport system inner membrane component A9258_15625 PF00528 Binding-protein-dependent transport system inner membrane component A9258_15630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_15640 PF17969 L,D-transpeptidase C-terminal domain A9258_15640 PF01476 LysM domain A9258_15640 PF03734 L,D-transpeptidase catalytic domain A9258_15655 PF05971 RNA methyltransferase A9258_15660 PF00877 NlpC/P60 family A9258_15665 PF01648 4'-phosphopantetheinyl transferase superfamily A9258_15670 PF00085 Thioredoxin A9258_15680 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase A9258_15685 PF01842 ACT domain A9258_15685 PF00551 Formyl transferase A9258_15695 PF13396 Phospholipase_D-nuclease N-terminal A9258_15695 PF13091 PLD-like domain A9258_15710 PF01551 Peptidase family M23 A9258_15715 PF00128 Alpha amylase, catalytic domain A9258_15720 PF10145 Phage-related minor tail protein A9258_15720 PF01464 Transglycosylase SLT domain A9258_15720 PF01551 Peptidase family M23 A9258_15725 PF00230 Major intrinsic protein A9258_15730 PF02075 Crossover junction endodeoxyribonuclease RuvC A9258_15740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A9258_15760 PF08497 Radical SAM N-terminal A9258_15760 PF11842 Domain of unknown function (DUF3362) A9258_15760 PF04055 Radical SAM superfamily A9258_15770 PF00873 AcrB/AcrD/AcrF family A9258_15775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_15775 PF00529 HlyD membrane-fusion protein of T1SS A9258_15780 PF00990 Diguanylate cyclase, GGDEF domain A9258_15785 PF01734 Patatin-like phospholipase A9258_15790 PF00209 Sodium:neurotransmitter symporter family A9258_15805 PF00691 OmpA family A9258_15805 PF01389 OmpA-like transmembrane domain A9258_15810 PF01389 OmpA-like transmembrane domain A9258_15810 PF00691 OmpA family A9258_15815 PF01389 OmpA-like transmembrane domain A9258_15815 PF00691 OmpA family A9258_15820 PF03949 Malic enzyme, NAD binding domain A9258_15820 PF00390 Malic enzyme, N-terminal domain A9258_15825 PF12833 Helix-turn-helix domain A9258_15830 PF01554 MatE A9258_15835 PF10692 Protein of unknown function (DUF2498) A9258_15840 PF00990 Diguanylate cyclase, GGDEF domain A9258_15840 PF00072 Response regulator receiver domain A9258_15845 PF00860 Permease family A9258_15855 PF01235 Sodium:alanine symporter family A9258_15860 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A9258_15860 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A9258_15865 PF01699 Sodium/calcium exchanger protein A9258_15870 PF08534 Redoxin A9258_15880 PF00293 NUDIX domain A9258_15900 PF00005 ABC transporter A9258_15905 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase A9258_15905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A9258_15910 PF03932 CutC family A9258_15915 PF00480 ROK family A9258_15925 PF01435 Peptidase family M48 A9258_15930 PF12849 PBP superfamily domain A9258_15935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_15935 PF00989 PAS fold A9258_15935 PF11808 Phosphate regulon sensor protein PhoR A9258_15935 PF00512 His Kinase A (phospho-acceptor) domain A9258_15940 PF00486 Transcriptional regulatory protein, C terminal A9258_15940 PF00072 Response regulator receiver domain A9258_15945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A9258_15950 PF02515 CoA-transferase family III A9258_15955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A9258_15955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A9258_15955 PF02770 Acyl-CoA dehydrogenase, middle domain A9258_15960 PF01590 GAF domain A9258_15960 PF02954 Bacterial regulatory protein, Fis family A9258_15960 PF00158 Sigma-54 interaction domain A9258_15965 PF00171 Aldehyde dehydrogenase family A9258_15975 PF00892 EamA-like transporter family A9258_15980 PF12431 Transcriptional regulator A9258_15980 PF00072 Response regulator receiver domain A9258_15985 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain A9258_15985 PF17203 Single cache domain 3 A9258_15985 PF00989 PAS fold A9258_15985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_15990 PF03949 Malic enzyme, NAD binding domain A9258_15990 PF00390 Malic enzyme, N-terminal domain A9258_15995 PF03390 2-hydroxycarboxylate transporter family A9258_16000 PF01047 MarR family A9258_16005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_16005 PF00529 HlyD membrane-fusion protein of T1SS A9258_16030 PF01679 Proteolipid membrane potential modulator A9258_16040 PF13597 Anaerobic ribonucleoside-triphosphate reductase A9258_16040 PF03477 ATP cone domain A9258_16050 PF03119 NAD-dependent DNA ligase C4 zinc finger domain A9258_16050 PF00533 BRCA1 C Terminus (BRCT) domain A9258_16050 PF03120 NAD-dependent DNA ligase OB-fold domain A9258_16050 PF12826 Helix-hairpin-helix motif A9258_16050 PF01653 NAD-dependent DNA ligase adenylation domain A9258_16055 PF04354 ZipA, C-terminal FtsZ-binding domain A9258_16060 PF02463 RecF/RecN/SMC N terminal domain A9258_16060 PF06470 SMC proteins Flexible Hinge Domain A9258_16070 PF03458 UPF0126 domain A9258_16080 PF05951 Bacterial protein of unknown function (DUF882) A9258_16085 PF03734 L,D-transpeptidase catalytic domain A9258_16085 PF01471 Putative peptidoglycan binding domain A9258_16100 PF00535 Glycosyl transferase family 2 A9258_16115 PF00128 Alpha amylase, catalytic domain A9258_16125 PF00196 Bacterial regulatory proteins, luxR family A9258_16125 PF00072 Response regulator receiver domain A9258_16145 PF00999 Sodium/hydrogen exchanger family A9258_16145 PF02080 TrkA-C domain A9258_16145 PF02254 TrkA-N domain A9258_16150 PF00990 Diguanylate cyclase, GGDEF domain A9258_16155 PF11734 TilS substrate C-terminal domain A9258_16155 PF01171 PP-loop family A9258_16155 PF09179 TilS substrate binding domain A9258_16160 PF05649 Peptidase family M13 A9258_16160 PF01431 Peptidase family M13 A9258_16170 PF12848 ABC transporter A9258_16170 PF00005 ABC transporter A9258_16170 PF16326 ABC transporter C-terminal domain A9258_16175 PF13302 Acetyltransferase (GNAT) domain A9258_16180 PF13520 Amino acid permease A9258_16185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_16185 PF03466 LysR substrate binding domain A9258_16190 PF12706 Beta-lactamase superfamily domain A9258_16200 PF03466 LysR substrate binding domain A9258_16200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_16210 PF08543 Phosphomethylpyrimidine kinase A9258_16215 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain A9258_16215 PF01276 Orn/Lys/Arg decarboxylase, major domain A9258_16215 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain A9258_16220 PF13520 Amino acid permease A9258_16225 PF00486 Transcriptional regulatory protein, C terminal A9258_16225 PF18500 CadC C-terminal domain 1 A9258_16230 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit A9258_16235 PF01336 OB-fold nucleic acid binding domain A9258_16235 PF07733 Bacterial DNA polymerase III alpha NTPase domain A9258_16235 PF02811 PHP domain A9258_16235 PF14579 Helix-hairpin-helix motif A9258_16235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A9258_16240 PF01351 Ribonuclease HII A9258_16245 PF02684 Lipid-A-disaccharide synthetase A9258_16250 PF00132 Bacterial transferase hexapeptide (six repeats) A9258_16250 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 A9258_16255 PF07977 FabA-like domain A9258_16260 PF00132 Bacterial transferase hexapeptide (six repeats) A9258_16260 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD A9258_16265 PF03938 Outer membrane protein (OmpH-like) A9258_16270 PF01103 Surface antigen A9258_16270 PF07244 Surface antigen variable number repeat A9258_16275 PF02163 Peptidase family M50 A9258_16275 PF17820 PDZ domain A9258_16280 PF13288 DXP reductoisomerase C-terminal domain A9258_16280 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase A9258_16280 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain A9258_16290 PF01255 Putative undecaprenyl diphosphate synthase A9258_16295 PF01765 Ribosome recycling factor A9258_16300 PF00696 Amino acid kinase family A9258_16305 PF00889 Elongation factor TS A9258_16310 PF00318 Ribosomal protein S2 A9258_16315 PF00557 Metallopeptidase family M24 A9258_16320 PF01909 Nucleotidyltransferase domain A9258_16320 PF08335 GlnD PII-uridylyltransferase A9258_16320 PF01842 ACT domain A9258_16320 PF01966 HD domain A9258_16325 PF00132 Bacterial transferase hexapeptide (six repeats) A9258_16325 PF14602 Hexapeptide repeat of succinyl-transferase A9258_16325 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal A9258_16330 PF11944 Protein of unknown function (DUF3461) A9258_16335 PF02378 Phosphotransferase system, EIIC A9258_16335 PF00367 phosphotransferase system, EIIB A9258_16340 PF07148 Maltose operon periplasmic protein precursor (MalM) A9258_16345 PF02264 LamB porin A9258_16350 PF00258 Flavodoxin A9258_16355 PF00849 RNA pseudouridylate synthase A9258_16360 PF04287 tRNA pseudouridine synthase C A9258_16385 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) A9258_16390 PF07348 Syd protein (SUKH-2) A9258_16395 PF14489 QueF-like protein A9258_16395 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term A9258_16405 PF07694 5TMR of 5TMR-LYT A9258_16405 PF00990 Diguanylate cyclase, GGDEF domain A9258_16410 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases A9258_16410 PF11892 Domain of unknown function (DUF3412) A9258_16410 PF03641 Possible lysine decarboxylase A9258_16415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain A9258_16415 PF01367 5'-3' exonuclease, C-terminal SAM fold A9258_16420 PF00180 Isocitrate/isopropylmalate dehydrogenase A9258_16420 PF18324 Hypothetical protein TT1725 A9258_16430 PF01728 FtsJ-like methyltransferase A9258_16430 PF18125 RlmM ferredoxin-like domain A9258_16435 PF04241 Protein of unknown function (DUF423) A9258_16445 PF03466 LysR substrate binding domain A9258_16445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_16450 PF00672 HAMP domain A9258_16450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_16455 PF11798 IMS family HHH motif A9258_16455 PF11799 impB/mucB/samB family C-terminal domain A9258_16455 PF00817 impB/mucB/samB family A9258_16470 PF02424 ApbE family A9258_16475 PF00175 Oxidoreductase NAD-binding domain A9258_16475 PF00970 Oxidoreductase FAD-binding domain A9258_16475 PF00111 2Fe-2S iron-sulfur cluster binding domain A9258_16480 PF02508 Rnf-Nqr subunit, membrane protein A9258_16485 PF02508 Rnf-Nqr subunit, membrane protein A9258_16490 PF04205 FMN-binding domain A9258_16495 PF03116 NQR2, RnfD, RnfE family A9258_16500 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) A9258_16500 PF11973 NQRA C-terminal domain A9258_16505 PF01722 BolA-like protein A9258_16510 PF05175 Methyltransferase small domain A9258_16520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A9258_16530 PF07690 Major Facilitator Superfamily A9258_16535 PF03502 Nucleoside-specific channel-forming protein, Tsx A9258_16540 PF04461 Protein of unknown function (DUF520) A9258_16545 PF02558 Ketopantoate reductase PanE/ApbA A9258_16545 PF08546 Ketopantoate reductase PanE/ApbA C terminal A9258_16550 PF01965 DJ-1/PfpI family A9258_16555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A9258_16555 PF00205 Thiamine pyrophosphate enzyme, central domain A9258_16555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A9258_16560 PF03306 Alpha-acetolactate decarboxylase A9258_16565 PF03466 LysR substrate binding domain A9258_16565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_16590 PF05638 Type VI secretion system effector, Hcp A9258_16595 PF00196 Bacterial regulatory proteins, luxR family A9258_16595 PF03472 Autoinducer binding domain A9258_16605 PF13462 Thioredoxin A9258_16605 PF06965 Na+/H+ antiporter 1 A9258_16610 PF16363 GDP-mannose 4,6 dehydratase A9258_16615 PF00970 Oxidoreductase FAD-binding domain A9258_16615 PF00175 Oxidoreductase NAD-binding domain A9258_16615 PF00042 Globin A9258_16620 PF03063 Prismane/CO dehydrogenase family A9258_16625 PF00210 Ferritin-like domain A9258_16665 PF00106 short chain dehydrogenase A9258_16675 PF03441 FAD binding domain of DNA photolyase A9258_16675 PF00875 DNA photolyase A9258_16680 PF13411 MerR HTH family regulatory protein A9258_16685 PF08349 Protein of unknown function (DUF1722) A9258_16715 PF01817 Chorismate mutase type II A9258_16715 PF00800 Prephenate dehydratase A9258_16745 PF09588 YqaJ-like viral recombinase domain A9258_16785 PF04002 RadC-like JAB domain A9258_16795 PF04055 Radical SAM superfamily A9258_16800 PF06508 Queuosine biosynthesis protein QueC A9258_16815 PF01242 6-pyruvoyl tetrahydropterin synthase A9258_16830 PF09382 RQC domain A9258_16830 PF16124 RecQ zinc-binding A9258_16830 PF00570 HRDC domain A9258_16830 PF00271 Helicase conserved C-terminal domain A9258_16830 PF00270 DEAD/DEAH box helicase A9258_16850 PF16124 RecQ zinc-binding A9258_16850 PF09382 RQC domain A9258_16850 PF00271 Helicase conserved C-terminal domain A9258_16850 PF00270 DEAD/DEAH box helicase A9258_16850 PF00570 HRDC domain A9258_16855 PF18339 RapA N-terminal Tudor like domain 1 A9258_16855 PF18337 RapA N-terminal Tudor like domain A9258_16855 PF12137 RNA polymerase recycling family C-terminal A9258_16855 PF00176 SNF2 family N-terminal domain A9258_16855 PF00271 Helicase conserved C-terminal domain A9258_16880 PF07715 TonB-dependent Receptor Plug Domain A9258_16880 PF00593 TonB dependent receptor A9258_16900 PF00005 ABC transporter A9258_16900 PF12857 TOBE-like domain A9258_16905 PF00158 Sigma-54 interaction domain A9258_16905 PF01590 GAF domain A9258_16940 PF13649 Methyltransferase domain A9258_16955 PF03976 Polyphosphate kinase 2 (PPK2) A9258_16960 PF01740 STAS domain A9258_16960 PF00916 Sulfate permease family A9258_16965 PF07995 Glucose / Sorbosone dehydrogenase A9258_16975 PF02743 Cache domain A9258_16975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_16975 PF00672 HAMP domain A9258_16980 PF03573 outer membrane porin, OprD family A9258_16985 PF00106 short chain dehydrogenase A9258_17010 PF02074 Carboxypeptidase Taq (M32) metallopeptidase A9258_17025 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A9258_17025 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A9258_17030 PF12392 Collagenase A9258_17030 PF01136 Peptidase family U32 A9258_17035 PF01810 LysE type translocator A9258_17040 PF03466 LysR substrate binding domain A9258_17040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_17050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_17050 PF02743 Cache domain A9258_17050 PF00672 HAMP domain A9258_17055 PF00072 Response regulator receiver domain A9258_17065 PF09078 CheY binding A9258_17065 PF01627 Hpt domain A9258_17065 PF02895 Signal transducing histidine kinase, homodimeric domain A9258_17065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_17065 PF01584 CheW-like domain A9258_17070 PF00672 HAMP domain A9258_17070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_17070 PF12729 Four helix bundle sensory module for signal transduction A9258_17075 PF01584 CheW-like domain A9258_17080 PF02203 Tar ligand binding domain homologue A9258_17080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_17080 PF00672 HAMP domain A9258_17085 PF01739 CheR methyltransferase, SAM binding domain A9258_17085 PF03705 CheR methyltransferase, all-alpha domain A9258_17090 PF03975 CheD chemotactic sensory transduction A9258_17095 PF01339 CheB methylesterase A9258_17095 PF00072 Response regulator receiver domain A9258_17100 PF00266 Aminotransferase class-V A9258_17130 PF01590 GAF domain A9258_17130 PF00989 PAS fold A9258_17130 PF00563 EAL domain A9258_17130 PF00990 Diguanylate cyclase, GGDEF domain A9258_17140 PF12838 4Fe-4S dicluster domain A9258_17145 PF00842 Alanine racemase, C-terminal domain A9258_17145 PF01168 Alanine racemase, N-terminal domain A9258_17150 PF03796 DnaB-like helicase C terminal domain A9258_17150 PF00772 DnaB-like helicase N terminal domain A9258_17160 PF12792 CSS motif domain associated with EAL A9258_17160 PF00563 EAL domain A9258_17165 PF00149 Calcineurin-like phosphoesterase A9258_17165 PF02872 5'-nucleotidase, C-terminal domain A9258_17185 PF00158 Sigma-54 interaction domain A9258_17185 PF02954 Bacterial regulatory protein, Fis family A9258_17185 PF00072 Response regulator receiver domain A9258_17190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A9258_17190 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase A9258_17200 PF04102 SlyX A9258_17205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A9258_17210 PF09526 Probable metal-binding protein (DUF2387) A9258_17220 PF00072 Response regulator receiver domain A9258_17220 PF01584 CheW-like domain A9258_17225 PF00561 alpha/beta hydrolase fold A9258_17230 PF00360 Phytochrome region A9258_17230 PF01590 GAF domain A9258_17230 PF00563 EAL domain A9258_17230 PF00990 Diguanylate cyclase, GGDEF domain A9258_17235 PF06794 Uncharacterised protein family (UPF0270) A9258_17240 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A9258_17240 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A9258_17240 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A9258_17245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family A9258_17250 PF00535 Glycosyl transferase family 2 A9258_17255 PF02911 Formyl transferase, C-terminal domain A9258_17255 PF01370 NAD dependent epimerase/dehydratase family A9258_17255 PF00551 Formyl transferase A9258_17260 PF01522 Polysaccharide deacetylase A9258_17265 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase A9258_17270 PF00892 EamA-like transporter family A9258_17275 PF00893 Small Multidrug Resistance protein A9258_17280 PF00485 Phosphoribulokinase / Uridine kinase family A9258_17295 PF02566 OsmC-like protein A9258_17300 PF13545 Crp-like helix-turn-helix domain A9258_17300 PF00027 Cyclic nucleotide-binding domain A9258_17305 PF13847 Methyltransferase domain A9258_17310 PF18416 N-acetylglucosamine binding protein domain 2 A9258_17310 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading A9258_17315 PF12561 ToxR activated gene A lipoprotein domain A9258_17315 PF17945 Beta/Gamma crystallin A9258_17325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_17325 PF00989 PAS fold A9258_17325 PF00512 His Kinase A (phospho-acceptor) domain A9258_17335 PF13443 Cro/C1-type HTH DNA-binding domain A9258_17340 PF12832 MFS_1 like family A9258_17345 PF00593 TonB dependent receptor A9258_17345 PF07715 TonB-dependent Receptor Plug Domain A9258_17365 PF01243 Pyridoxamine 5'-phosphate oxidase A9258_17370 PF06228 Haem utilisation ChuX/HutX A9258_17380 PF01032 FecCD transport family A9258_17385 PF00005 ABC transporter A9258_17395 PF01370 NAD dependent epimerase/dehydratase family A9258_17405 PF01791 DeoC/LacD family aldolase A9258_17410 PF07670 Nucleoside recognition A9258_17410 PF07662 Na+ dependent nucleoside transporter C-terminus A9258_17410 PF01773 Na+ dependent nucleoside transporter N-terminus A9258_17415 PF01048 Phosphorylase superfamily A9258_17420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_17420 PF03466 LysR substrate binding domain A9258_17435 PF01464 Transglycosylase SLT domain A9258_17440 PF01048 Phosphorylase superfamily A9258_17455 PF12848 ABC transporter A9258_17455 PF00005 ABC transporter A9258_17465 PF00860 Permease family A9258_17470 PF00226 DnaJ domain A9258_17470 PF05099 Tellurite resistance protein TerB A9258_17475 PF00483 Nucleotidyl transferase A9258_17480 PF01636 Phosphotransferase enzyme family A9258_17485 PF03968 OstA-like protein A9258_17485 PF04453 LPS transport system D A9258_17490 PF00639 PPIC-type PPIASE domain A9258_17490 PF09312 SurA N-terminal domain A9258_17495 PF04166 Pyridoxal phosphate biosynthetic protein PdxA A9258_17500 PF00398 Ribosomal RNA adenine dimethylase A9258_17505 PF04379 ApaG domain A9258_17510 PF00149 Calcineurin-like phosphoesterase A9258_17520 PF00296 Luciferase-like monooxygenase A9258_17540 PF13193 AMP-binding enzyme C-terminal domain A9258_17540 PF00501 AMP-binding enzyme A9258_17550 PF01926 50S ribosome-binding GTPase A9258_17550 PF01018 GTP1/OBG A9258_17555 PF01016 Ribosomal L27 protein A9258_17565 PF00348 Polyprenyl synthetase A9258_17570 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) A9258_17575 PF01145 SPFH domain / Band 7 family A9258_17580 PF12221 Bacterial membrane protein N terminal A9258_17580 PF01145 SPFH domain / Band 7 family A9258_17585 PF16360 GTP-binding GTPase Middle Region A9258_17585 PF01926 50S ribosome-binding GTPase A9258_17585 PF13167 GTP-binding GTPase N-terminal A9258_17590 PF17209 Hfq protein A9258_17600 PF08676 MutL C terminal dimerisation domain A9258_17600 PF01119 DNA mismatch repair protein, C-terminal domain A9258_17605 PF01520 N-acetylmuramoyl-L-alanine amidase A9258_17610 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE A9258_17615 PF03853 YjeF-related protein N-terminus A9258_17615 PF01256 Carbohydrate kinase A9258_17620 PF08331 Domain of unknown function (DUF1730) A9258_17625 PF00480 ROK family A9258_17640 PF00005 ABC transporter A9258_17640 PF09383 NIL domain A9258_17645 PF00528 Binding-protein-dependent transport system inner membrane component A9258_17650 PF03180 NLPA lipoprotein A9258_17655 PF02357 Transcription termination factor nusG A9258_17660 PF12729 Four helix bundle sensory module for signal transduction A9258_17660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_17660 PF00672 HAMP domain A9258_17665 PF03707 Bacterial signalling protein N terminal repeat A9258_17665 PF00990 Diguanylate cyclase, GGDEF domain A9258_17665 PF00563 EAL domain A9258_17670 PF09456 RcsC Alpha-Beta-Loop (ABL) A9258_17670 PF00512 His Kinase A (phospho-acceptor) domain A9258_17670 PF00072 Response regulator receiver domain A9258_17670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_17680 PF01966 HD domain A9258_17680 PF13286 Phosphohydrolase-associated domain A9258_17685 PF01627 Hpt domain A9258_17685 PF00989 PAS fold A9258_17685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_17685 PF00072 Response regulator receiver domain A9258_17685 PF00512 His Kinase A (phospho-acceptor) domain A9258_17685 PF18415 Histidine kinase receptor ArcB trans-membrane domain A9258_17705 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) A9258_17710 PF03466 LysR substrate binding domain A9258_17710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_17720 PF01259 SAICAR synthetase A9258_17725 PF06804 NlpB/DapX lipoprotein A9258_17730 PF00701 Dihydrodipicolinate synthetase family A9258_17735 PF01842 ACT domain A9258_17740 PF00578 AhpC/TSA family A9258_17745 PF03887 YfbU domain A9258_17750 PF04217 Protein of unknown function, DUF412 A9258_17755 PF00871 Acetokinase family A9258_17760 PF07085 DRTGG domain A9258_17760 PF01515 Phosphate acetyl/butaryl transferase A9258_17765 PF10369 Small subunit of acetolactate synthase A9258_17770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A9258_17770 PF00205 Thiamine pyrophosphate enzyme, central domain A9258_17770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A9258_17780 PF01569 PAP2 superfamily A9258_17790 PF08502 LeuA allosteric (dimerisation) domain A9258_17790 PF00682 HMGL-like A9258_17795 PF00180 Isocitrate/isopropylmalate dehydrogenase A9258_17800 PF00330 Aconitase family (aconitate hydratase) A9258_17805 PF00694 Aconitase C-terminal domain A9258_17825 PF00528 Binding-protein-dependent transport system inner membrane component A9258_17830 PF00005 ABC transporter A9258_17835 PF13638 PIN domain A9258_17835 PF02562 PhoH-like protein A9258_17845 PF02867 Ribonucleotide reductase, barrel domain A9258_17845 PF00317 Ribonucleotide reductase, all-alpha domain A9258_17845 PF08343 Ribonucleotide reductase N-terminal A9258_17875 PF00176 SNF2 family N-terminal domain A9258_17875 PF00271 Helicase conserved C-terminal domain A9258_17875 PF12137 RNA polymerase recycling family C-terminal A9258_17875 PF18337 RapA N-terminal Tudor like domain A9258_17875 PF18339 RapA N-terminal Tudor like domain 1 A9258_17880 PF00849 RNA pseudouridylate synthase A9258_17890 PF03707 Bacterial signalling protein N terminal repeat A9258_17890 PF00990 Diguanylate cyclase, GGDEF domain A9258_17890 PF13188 PAS domain A9258_17890 PF00563 EAL domain A9258_17900 PF00118 TCP-1/cpn60 chaperonin family A9258_17905 PF00166 Chaperonin 10 Kd subunit A9258_17910 PF01554 MatE A9258_17915 PF04186 FxsA cytoplasmic membrane protein A9258_17920 PF00206 Lyase A9258_17920 PF10415 Fumarase C C-terminus A9258_17925 PF03605 Anaerobic c4-dicarboxylate membrane transporter A9258_17930 PF00267 Gram-negative porin A9258_17935 PF07690 Major Facilitator Superfamily A9258_17940 PF03466 LysR substrate binding domain A9258_17940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_17945 PF04151 Bacterial pre-peptidase C-terminal domain A9258_17945 PF02868 Thermolysin metallopeptidase, alpha-helical domain A9258_17945 PF01447 Thermolysin metallopeptidase, catalytic domain A9258_17945 PF03413 Peptidase propeptide and YPEB domain A9258_17945 PF07504 Fungalysin/Thermolysin Propeptide Motif A9258_17955 PF13302 Acetyltransferase (GNAT) domain A9258_17965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A9258_17965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A9258_17970 PF07690 Major Facilitator Superfamily A9258_17975 PF01725 Ham1 family A9258_17980 PF06969 HemN C-terminal domain A9258_17980 PF04055 Radical SAM superfamily A9258_17985 PF03889 Alternative ribosome-rescue factor A A9258_17990 PF01872 RibD C-terminal domain A9258_17995 PF13411 MerR HTH family regulatory protein A9258_18000 PF01808 AICARFT/IMPCHase bienzyme A9258_18000 PF02142 MGS-like domain A9258_18005 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain A9258_18005 PF02844 Phosphoribosylglycinamide synthetase, N domain A9258_18005 PF02843 Phosphoribosylglycinamide synthetase, C domain A9258_18020 PF00128 Alpha amylase, catalytic domain A9258_18035 PF04545 Sigma-70, region 4 A9258_18035 PF03979 Sigma-70 factor, region 1.1 A9258_18035 PF04546 Sigma-70, non-essential region A9258_18035 PF04542 Sigma-70 region 2 A9258_18035 PF00140 Sigma-70 factor, region 1.2 A9258_18035 PF04539 Sigma-70 region 3 A9258_18040 PF10410 DnaB-helicase binding domain of primase A9258_18040 PF08278 DNA primase DnaG DnaB-binding A9258_18040 PF08275 DNA primase catalytic core, N-terminal domain A9258_18040 PF01807 CHC2 zinc finger A9258_18045 PF09424 Yqey-like protein A9258_18050 PF00814 Glycoprotease family A9258_18055 PF04539 Sigma-70 region 3 A9258_18055 PF04545 Sigma-70, region 4 A9258_18055 PF00140 Sigma-70 factor, region 1.2 A9258_18055 PF04542 Sigma-70 region 2 A9258_18060 PF01551 Peptidase family M23 A9258_18060 PF01476 LysM domain A9258_18065 PF09335 SNARE associated Golgi protein A9258_18075 PF01975 Survival protein SurE A9258_18080 PF01142 tRNA pseudouridine synthase D (TruD) A9258_18085 PF02542 YgbB family A9258_18090 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase A9258_18095 PF04977 Septum formation initiator A9258_18100 PF00113 Enolase, C-terminal TIM barrel domain A9258_18100 PF03952 Enolase, N-terminal domain A9258_18105 PF00117 Glutamine amidotransferase class-I A9258_18105 PF06418 CTP synthase N-terminus A9258_18110 PF03819 MazG nucleotide pyrophosphohydrolase domain A9258_18115 PF02824 TGS domain A9258_18115 PF04607 Region found in RelA / SpoT proteins A9258_18115 PF13291 ACT domain A9258_18120 PF01938 TRAM domain A9258_18120 PF05958 tRNA (Uracil-5-)-methyltransferase A9258_18125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) A9258_18125 PF00072 Response regulator receiver domain A9258_18125 PF00672 HAMP domain A9258_18125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_18125 PF01627 Hpt domain A9258_18125 PF00512 His Kinase A (phospho-acceptor) domain A9258_18130 PF07308 Protein of unknown function (DUF1456) A9258_18135 PF01510 N-acetylmuramoyl-L-alanine amidase A9258_18140 PF08220 DeoR-like helix-turn-helix domain A9258_18140 PF00455 DeoR C terminal sensor domain A9258_18145 PF08013 Tagatose 6 phosphate kinase A9258_18150 PF01380 SIS domain A9258_18155 PF03830 PTS system sorbose subfamily IIB component A9258_18160 PF03609 PTS system sorbose-specific iic component A9258_18165 PF03613 PTS system mannose/fructose/sorbose family IID component A9258_18170 PF03610 PTS system fructose IIA component A9258_18175 PF01979 Amidohydrolase family A9258_18180 PF01116 Fructose-bisphosphate aldolase class-II A9258_18190 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ A9258_18195 PF11967 Recombination protein O N terminal A9258_18195 PF02565 Recombination protein O C terminal A9258_18200 PF01926 50S ribosome-binding GTPase A9258_18200 PF07650 KH domain A9258_18205 PF14622 Ribonuclease-III-like A9258_18205 PF00035 Double-stranded RNA binding motif A9258_18210 PF10502 Signal peptidase, peptidase S26 A9258_18215 PF03144 Elongation factor Tu domain 2 A9258_18215 PF00009 Elongation factor Tu GTP binding domain A9258_18215 PF00679 Elongation factor G C-terminus A9258_18215 PF06421 GTP-binding protein LepA C-terminus A9258_18225 PF03888 MucB/RseB N-terminal domain A9258_18225 PF17188 MucB/RseB C-terminal domain A9258_18230 PF03872 Anti sigma-E protein RseA, N-terminal domain A9258_18230 PF03873 Anti sigma-E protein RseA, C-terminal domain A9258_18235 PF04542 Sigma-70 region 2 A9258_18235 PF08281 Sigma-70, region 4 A9258_18240 PF00890 FAD binding domain A9258_18240 PF02910 Fumarate reductase flavoprotein C-term A9258_18250 PF03937 Flavinator of succinate dehydrogenase A9258_18255 PF01571 Aminomethyltransferase folate-binding domain A9258_18260 PF03466 LysR substrate binding domain A9258_18260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_18275 PF03091 CutA1 divalent ion tolerance protein A9258_18280 PF02683 Cytochrome C biogenesis protein transmembrane region A9258_18280 PF11412 Disulphide bond corrector protein DsbC A9258_18290 PF01266 FAD dependent oxidoreductase A9258_18295 PF01116 Fructose-bisphosphate aldolase class-II A9258_18300 PF00162 Phosphoglycerate kinase A9258_18305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A9258_18305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A9258_18310 PF00480 ROK family A9258_18315 PF01208 Uroporphyrinogen decarboxylase (URO-D) A9258_18320 PF09297 NADH pyrophosphatase zinc ribbon domain A9258_18320 PF00293 NUDIX domain A9258_18325 PF18327 Proline utilization A proline dehydrogenase N-terminal domain A9258_18325 PF14850 DNA-binding domain of Proline dehydrogenase A9258_18325 PF00171 Aldehyde dehydrogenase family A9258_18325 PF01619 Proline dehydrogenase A9258_18330 PF08239 Bacterial SH3 domain A9258_18335 PF00027 Cyclic nucleotide-binding domain A9258_18335 PF00520 Ion transport protein A9258_18340 PF02743 Cache domain A9258_18340 PF00672 HAMP domain A9258_18340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_18350 PF08335 GlnD PII-uridylyltransferase A9258_18350 PF03710 Glutamate-ammonia ligase adenylyltransferase A9258_18370 PF00326 Prolyl oligopeptidase family A9258_18370 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A9258_18375 PF00291 Pyridoxal-phosphate dependent enzyme A9258_18380 PF00528 Binding-protein-dependent transport system inner membrane component A9258_18385 PF00528 Binding-protein-dependent transport system inner membrane component A9258_18390 PF00005 ABC transporter A9258_18395 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_18400 PF12704 MacB-like periplasmic core domain A9258_18400 PF02687 FtsX-like permease family A9258_18400 PF00005 ABC transporter A9258_18405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A9258_18410 PF00486 Transcriptional regulatory protein, C terminal A9258_18410 PF00072 Response regulator receiver domain A9258_18415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_18415 PF00672 HAMP domain A9258_18415 PF16527 Two-component sensor protein CpxA, periplasmic domain A9258_18415 PF00512 His Kinase A (phospho-acceptor) domain A9258_18420 PF00293 NUDIX domain A9258_18420 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain A9258_18420 PF09297 NADH pyrophosphatase zinc ribbon domain A9258_18455 PF03060 Nitronate monooxygenase A9258_18465 PF00445 Ribonuclease T2 family A9258_18480 PF03150 Di-haem cytochrome c peroxidase A9258_18480 PF00034 Cytochrome c A9258_18485 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase A9258_18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_18500 PF03466 LysR substrate binding domain A9258_18505 PF00271 Helicase conserved C-terminal domain A9258_18505 PF00270 DEAD/DEAH box helicase A9258_18515 PF00753 Metallo-beta-lactamase superfamily A9258_18520 PF01425 Amidase A9258_18525 PF04371 Porphyromonas-type peptidyl-arginine deiminase A9258_18530 PF03466 LysR substrate binding domain A9258_18530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_18540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A9258_18545 PF00583 Acetyltransferase (GNAT) family A9258_18565 PF03144 Elongation factor Tu domain 2 A9258_18565 PF16658 Class II release factor RF3, C-terminal domain A9258_18565 PF00009 Elongation factor Tu GTP binding domain A9258_18570 PF00072 Response regulator receiver domain A9258_18570 PF00990 Diguanylate cyclase, GGDEF domain A9258_18575 PF00990 Diguanylate cyclase, GGDEF domain A9258_18575 PF13426 PAS domain A9258_18575 PF00563 EAL domain A9258_18580 PF05762 VWA domain containing CoxE-like protein A9258_18585 PF12592 Protein of unknown function (DUF3763) A9258_18585 PF07728 AAA domain (dynein-related subfamily) A9258_18585 PF17868 AAA lid domain A9258_18595 PF00583 Acetyltransferase (GNAT) family A9258_18605 PF00501 AMP-binding enzyme A9258_18615 PF04262 Glutamate-cysteine ligase A9258_18620 PF05193 Peptidase M16 inactive domain A9258_18620 PF00675 Insulinase (Peptidase family M16) A9258_18625 PF09335 SNARE associated Golgi protein A9258_18630 PF02801 Beta-ketoacyl synthase, C-terminal domain A9258_18630 PF08240 Alcohol dehydrogenase GroES-like domain A9258_18630 PF08990 Erythronolide synthase docking A9258_18630 PF16197 Ketoacyl-synthetase C-terminal extension A9258_18630 PF00109 Beta-ketoacyl synthase, N-terminal domain A9258_18630 PF08659 KR domain A9258_18630 PF00550 Phosphopantetheine attachment site A9258_18630 PF00698 Acyl transferase domain A9258_18630 PF14765 Polyketide synthase dehydratase A9258_18645 PF00175 Oxidoreductase NAD-binding domain A9258_18645 PF00970 Oxidoreductase FAD-binding domain A9258_18650 PF01281 Ribosomal protein L9, N-terminal domain A9258_18650 PF03948 Ribosomal protein L9, C-terminal domain A9258_18655 PF01084 Ribosomal protein S18 A9258_18660 PF01250 Ribosomal protein S6 A9258_18665 PF01566 Natural resistance-associated macrophage protein A9258_18685 PF13673 Acetyltransferase (GNAT) domain A9258_18695 PF00588 SpoU rRNA Methylase family A9258_18695 PF08032 RNA 2'-O ribose methyltransferase substrate binding A9258_18700 PF08461 Ribonuclease R winged-helix domain A9258_18700 PF17876 Cold shock domain A9258_18700 PF08206 Ribonuclease B OB domain A9258_18700 PF00773 RNB domain A9258_18700 PF00575 S1 RNA binding domain A9258_18705 PF00990 Diguanylate cyclase, GGDEF domain A9258_18710 PF02664 S-Ribosylhomocysteinase (LuxS) A9258_18720 PF00543 Nitrogen regulatory protein P-II A9258_18725 PF02540 NAD synthase A9258_18725 PF00795 Carbon-nitrogen hydrolase A9258_18760 PF05567 Neisseria PilC beta-propeller domain A9258_18785 PF02401 LytB protein A9258_18790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A9258_18795 PF01252 Signal peptidase (SPase) II A9258_18800 PF00133 tRNA synthetases class I (I, L, M and V) A9258_18800 PF06827 Zinc finger found in FPG and IleRS A9258_18800 PF08264 Anticodon-binding domain of tRNA A9258_18805 PF06574 FAD synthetase A9258_18805 PF01687 Riboflavin kinase A9258_18810 PF03023 Lipid II flippase MurJ A9258_18815 PF01649 Ribosomal protein S20 A9258_18820 PF01022 Bacterial regulatory protein, arsR family A9258_18825 PF03466 LysR substrate binding domain A9258_18825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_18835 PF06965 Na+/H+ antiporter 1 A9258_18840 PF00303 Thymidylate synthase A9258_18845 PF01790 Prolipoprotein diacylglyceryl transferase A9258_18850 PF02896 PEP-utilising enzyme, TIM barrel domain A9258_18850 PF00391 PEP-utilising enzyme, mobile domain A9258_18850 PF05524 PEP-utilising enzyme, N-terminal A9258_18850 PF01590 GAF domain A9258_18855 PF00293 NUDIX domain A9258_18860 PF02976 DNA mismatch repair enzyme MutH A9258_18870 PF01245 Ribosomal protein L19 A9258_18875 PF01746 tRNA (Guanine-1)-methyltransferase A9258_18880 PF05239 PRC-barrel domain A9258_18880 PF01782 RimM N-terminal domain A9258_18885 PF00886 Ribosomal protein S16 A9258_18890 PF02978 Signal peptide binding domain A9258_18890 PF00448 SRP54-type protein, GTPase domain A9258_18890 PF02881 SRP54-type protein, helical bundle domain A9258_18895 PF01578 Cytochrome C assembly protein A9258_18900 PF00571 CBS domain A9258_18900 PF03471 Transporter associated domain A9258_18900 PF01595 Cyclin M transmembrane N-terminal domain A9258_18905 PF02082 Transcriptional regulator A9258_18910 PF00175 Oxidoreductase NAD-binding domain A9258_18910 PF00042 Globin A9258_18910 PF00970 Oxidoreductase FAD-binding domain A9258_18915 PF08238 Sel1 repeat A9258_18920 PF00056 lactate/malate dehydrogenase, NAD binding domain A9258_18920 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain A9258_18925 PF00528 Binding-protein-dependent transport system inner membrane component A9258_18930 PF00528 Binding-protein-dependent transport system inner membrane component A9258_18935 PF00497 Bacterial extracellular solute-binding proteins, family 3 A9258_18940 PF00005 ABC transporter A9258_18945 PF02863 Arginine repressor, C-terminal domain A9258_18945 PF01316 Arginine repressor, DNA binding domain A9258_18950 PF04261 Dyp-type peroxidase family A9258_18955 PF00005 ABC transporter A9258_18955 PF08402 TOBE domain A9258_18965 PF13416 Bacterial extracellular solute-binding protein A9258_18970 PF00543 Nitrogen regulatory protein P-II A9258_18975 PF00472 RF-1 domain A9258_18980 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A9258_18980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A9258_18985 PF07670 Nucleoside recognition A9258_18985 PF01773 Na+ dependent nucleoside transporter N-terminus A9258_18985 PF07662 Na+ dependent nucleoside transporter C-terminus A9258_18990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_18990 PF03466 LysR substrate binding domain A9258_18995 PF00255 Glutathione peroxidase A9258_19005 PF02595 Glycerate kinase family A9258_19010 PF02447 GntP family permease A9258_19015 PF05651 Putative sugar diacid recognition A9258_19015 PF13556 PucR C-terminal helix-turn-helix domain A9258_19015 PF17853 GGDEF-like domain A9258_19020 PF06062 Uncharacterised protein family (UPF0231) A9258_19035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_19035 PF08447 PAS fold A9258_19040 PF03372 Endonuclease/Exonuclease/phosphatase family A9258_19055 PF00270 DEAD/DEAH box helicase A9258_19055 PF00271 Helicase conserved C-terminal domain A9258_19065 PF08534 Redoxin A9258_19070 PF00403 Heavy-metal-associated domain A9258_19075 PF03714 Bacterial pullanase-associated domain A9258_19075 PF17967 Pullulanase N2 domain A9258_19075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A9258_19075 PF18494 Pullulanase Ins domain A9258_19075 PF11852 Domain of unknown function (DUF3372) A9258_19090 PF02583 Metal-sensitive transcriptional repressor A9258_19095 PF00155 Aminotransferase class I and II A9258_19100 PF03466 LysR substrate binding domain A9258_19100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_19110 PF04055 Radical SAM superfamily A9258_19115 PF11230 Protein of unknown function (DUF3029) A9258_19135 PF14684 Tricorn protease C1 domain A9258_19135 PF07676 WD40-like Beta Propeller Repeat A9258_19135 PF03572 Peptidase family S41 A9258_19135 PF14685 Tricorn protease PDZ domain A9258_19165 PF00672 HAMP domain A9258_19165 PF12729 Four helix bundle sensory module for signal transduction A9258_19165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_19170 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading A9258_19170 PF18416 N-acetylglucosamine binding protein domain 2 A9258_19175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_19175 PF03466 LysR substrate binding domain A9258_19180 PF00005 ABC transporter A9258_19180 PF12857 TOBE-like domain A9258_19185 PF00528 Binding-protein-dependent transport system inner membrane component A9258_19190 PF00528 Binding-protein-dependent transport system inner membrane component A9258_19205 PF13194 Domain of unknown function (DUF4010) A9258_19210 PF12464 Maltose acetyltransferase A9258_19210 PF14602 Hexapeptide repeat of succinyl-transferase A9258_19235 PF14698 Argininosuccinate lyase C-terminal A9258_19235 PF00206 Lyase A9258_19240 PF00764 Arginosuccinate synthase A9258_19245 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A9258_19245 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A9258_19250 PF00696 Amino acid kinase family A9258_19255 PF02774 Semialdehyde dehydrogenase, dimerisation domain A9258_19255 PF01118 Semialdehyde dehydrogenase, NAD binding domain A9258_19260 PF07687 Peptidase dimerisation domain A9258_19260 PF01546 Peptidase family M20/M25/M40 A9258_19265 PF00311 Phosphoenolpyruvate carboxylase A9258_19275 PF00696 Amino acid kinase family A9258_19275 PF03447 Homoserine dehydrogenase, NAD binding domain A9258_19275 PF00742 Homoserine dehydrogenase A9258_19280 PF01053 Cys/Met metabolism PLP-dependent enzyme A9258_19285 PF01340 Met Apo-repressor, MetJ A9258_19290 PF06445 GyrI-like small molecule binding domain A9258_19290 PF12833 Helix-turn-helix domain A9258_19295 PF01588 Putative tRNA binding domain A9258_19300 PF03222 Tryptophan/tyrosine permease family A9258_19305 PF00459 Inositol monophosphatase family A9258_19310 PF00293 NUDIX domain A9258_19315 PF13419 Haloacid dehalogenase-like hydrolase A9258_19320 PF00579 tRNA synthetases class I (W and Y) A9258_19320 PF01479 S4 domain A9258_19325 PF00196 Bacterial regulatory proteins, luxR family A9258_19330 PF01203 Type II secretion system (T2SS), protein N A9258_19335 PF04612 Type II secretion system (T2SS), protein M A9258_19340 PF05134 Type II secretion system (T2SS), protein L A9258_19340 PF12693 GspL periplasmic domain A9258_19345 PF03934 Type II secretion system (T2SS), protein K A9258_19350 PF11612 Type II secretion system (T2SS), protein J A9258_19350 PF07963 Prokaryotic N-terminal methylation motif A9258_19355 PF07963 Prokaryotic N-terminal methylation motif A9258_19355 PF02501 Type II secretion system (T2SS), protein I A9258_19360 PF12019 Type II transport protein GspH A9258_19360 PF07963 Prokaryotic N-terminal methylation motif A9258_19365 PF07963 Prokaryotic N-terminal methylation motif A9258_19365 PF08334 Type II secretion system (T2SS), protein G A9258_19370 PF00482 Type II secretion system (T2SS), protein F A9258_19375 PF00437 Type II/IV secretion system protein A9258_19380 PF00263 Bacterial type II and III secretion system protein A9258_19380 PF03958 Bacterial type II/III secretion system short domain A9258_19385 PF11356 Type II secretion system protein C A9258_19390 PF01479 S4 domain A9258_19395 PF01430 Hsp33 protein A9258_19405 PF00392 Bacterial regulatory proteins, gntR family A9258_19410 PF00557 Metallopeptidase family M24 A9258_19410 PF01321 Creatinase/Prolidase N-terminal domain A9258_19415 PF11756 Nitrous oxide-stimulated promoter A9258_19420 PF00583 Acetyltransferase (GNAT) family A9258_19425 PF05433 Glycine zipper 2TM domain A9258_19430 PF02872 5'-nucleotidase, C-terminal domain A9258_19430 PF00149 Calcineurin-like phosphoesterase A9258_19435 PF01810 LysE type translocator A9258_19440 PF00196 Bacterial regulatory proteins, luxR family A9258_19440 PF03472 Autoinducer binding domain A9258_19445 PF00765 Autoinducer synthase A9258_19450 PF03466 LysR substrate binding domain A9258_19450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_19455 PF17876 Cold shock domain A9258_19455 PF08206 Ribonuclease B OB domain A9258_19455 PF00773 RNB domain A9258_19460 PF00440 Bacterial regulatory proteins, tetR family A9258_19470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A9258_19470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A9258_19470 PF02378 Phosphotransferase system, EIIC A9258_19475 PF01232 Mannitol dehydrogenase Rossmann domain A9258_19475 PF08125 Mannitol dehydrogenase C-terminal domain A9258_19480 PF05068 Mannitol repressor A9258_19485 PF03471 Transporter associated domain A9258_19485 PF00999 Sodium/hydrogen exchanger family A9258_19485 PF02080 TrkA-C domain A9258_19505 PF01544 CorA-like Mg2+ transporter protein A9258_19510 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 A9258_19525 PF04307 LexA-binding, inner membrane-associated putative hydrolase A9258_19530 PF07670 Nucleoside recognition A9258_19530 PF01773 Na+ dependent nucleoside transporter N-terminus A9258_19530 PF07662 Na+ dependent nucleoside transporter C-terminus A9258_19535 PF00271 Helicase conserved C-terminal domain A9258_19535 PF00270 DEAD/DEAH box helicase A9258_19535 PF03880 DbpA RNA binding domain A9258_19560 PF01040 UbiA prenyltransferase family A9258_19565 PF00425 chorismate binding enzyme A9258_19570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A9258_19570 PF16582 Middle domain of thiamine pyrophosphate A9258_19570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A9258_19575 PF12697 Alpha/beta hydrolase family A9258_19580 PF00378 Enoyl-CoA hydratase/isomerase A9258_19585 PF13378 Enolase C-terminal domain-like A9258_19590 PF00501 AMP-binding enzyme A9258_19600 PF00419 Fimbrial protein A9258_19605 PF00419 Fimbrial protein A9258_19610 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain A9258_19610 PF02753 Pili assembly chaperone PapD, C-terminal domain A9258_19615 PF00577 Outer membrane usher protein A9258_19615 PF13953 PapC C-terminal domain A9258_19615 PF13954 PapC N-terminal domain A9258_19625 PF00419 Fimbrial protein A9258_19635 PF01752 Collagenase A9258_19635 PF08453 Peptidase family M9 N-terminal A9258_19640 PF02698 DUF218 domain A9258_19645 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain A9258_19645 PF02777 Iron/manganese superoxide dismutases, C-terminal domain A9258_19655 PF00561 alpha/beta hydrolase fold A9258_19660 PF03280 Proteobacterial lipase chaperone protein A9258_19675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A9258_19675 PF12793 Sugar transport-related sRNA regulator N-term A9258_19680 PF01053 Cys/Met metabolism PLP-dependent enzyme A9258_19690 PF00465 Iron-containing alcohol dehydrogenase A9258_19705 PF03577 Peptidase family C69 A9258_19710 PF00106 short chain dehydrogenase A9258_19730 PF02308 MgtC family A9258_19735 PF16657 Maltogenic Amylase, C-terminal domain A9258_19735 PF00128 Alpha amylase, catalytic domain A9258_19735 PF02903 Alpha amylase, N-terminal ig-like domain A9258_19750 PF00884 Sulfatase A9258_19755 PF01037 Lrp/AsnC ligand binding domain A9258_19765 PF04204 Homoserine O-succinyltransferase A9258_19770 PF12072 Domain of unknown function (DUF3552) A9258_19770 PF01966 HD domain A9258_19770 PF00013 KH domain A9258_19775 PF00994 Probable molybdopterin binding domain A9258_19775 PF02464 Competence-damaged protein A9258_19785 PF00005 ABC transporter A9258_19805 PF07722 Peptidase C26 A9258_19815 PF13545 Crp-like helix-turn-helix domain A9258_19815 PF00027 Cyclic nucleotide-binding domain A9258_19825 PF13419 Haloacid dehalogenase-like hydrolase A9258_19830 PF00589 Phage integrase family A9258_19830 PF02899 Phage integrase, N-terminal SAM-like domain A9258_19840 PF01678 Diaminopimelate epimerase A9258_19845 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A9258_19845 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A9258_19850 PF01491 Frataxin-like domain A9258_19855 PF02230 Phospholipase/Carboxylesterase A9258_19860 PF01295 Adenylate cyclase, class-I A9258_19860 PF12633 Adenylate cyclase NT domain A9258_19865 PF03900 Porphobilinogen deaminase, C-terminal domain A9258_19865 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain A9258_19870 PF02602 Uroporphyrinogen-III synthase HemD A9258_19875 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase A9258_19885 PF03692 Putative zinc- or iron-chelating domain A9258_19890 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded A9258_19905 PF07715 TonB-dependent Receptor Plug Domain A9258_19905 PF00593 TonB dependent receptor A9258_19930 PF01638 HxlR-like helix-turn-helix A9258_19935 PF08803 Putative mono-oxygenase ydhR A9258_19950 PF06055 Exopolysaccharide synthesis, ExoD A9258_19960 PF17151 Periplasmic sensor domain A9258_19960 PF00990 Diguanylate cyclase, GGDEF domain A9258_19975 PF13036 Peptidoglycan-synthase activator LpoB A9258_19985 PF06968 Biotin and Thiamin Synthesis associated domain A9258_19985 PF04055 Radical SAM superfamily A9258_19990 PF05690 Thiazole biosynthesis protein ThiG A9258_20000 PF00899 ThiF family A9258_20005 PF02581 Thiamine monophosphate synthase A9258_20010 PF13667 ThiC-associated domain A9258_20010 PF01964 Radical SAM ThiC family A9258_20015 PF03440 Aerolysin/Pertussis toxin (APT) domain A9258_20015 PF01117 Aerolysin toxin A9258_20030 PF00072 Response regulator receiver domain A9258_20030 PF00486 Transcriptional regulatory protein, C terminal A9258_20040 PF05525 Branched-chain amino acid transport protein A9258_20045 PF08443 RimK-like ATP-grasp domain A9258_20045 PF18030 RimK PreATP-grasp domain A9258_20050 PF02574 Homocysteine S-methyltransferase A9258_20050 PF02965 Vitamin B12 dependent methionine synthase, activation domain A9258_20050 PF02310 B12 binding domain A9258_20050 PF00809 Pterin binding enzyme A9258_20050 PF02607 B12 binding domain A9258_20055 PF00999 Sodium/hydrogen exchanger family A9258_20080 PF04320 Protein with unknown function (DUF469) A9258_20085 PF00419 Fimbrial protein A9258_20090 PF00691 OmpA family A9258_20090 PF01389 OmpA-like transmembrane domain A9258_20095 PF00577 Outer membrane usher protein A9258_20095 PF13954 PapC N-terminal domain A9258_20095 PF13953 PapC C-terminal domain A9258_20100 PF02753 Pili assembly chaperone PapD, C-terminal domain A9258_20100 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain A9258_20120 PF00419 Fimbrial protein A9258_20145 PF08668 HDOD domain A9258_20155 PF04228 Putative neutral zinc metallopeptidase A9258_20160 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) A9258_20175 PF13426 PAS domain A9258_20175 PF08447 PAS fold A9258_20175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A9258_20180 PF08678 Rsbr N terminal A9258_20180 PF01740 STAS domain A9258_20185 PF13581 Histidine kinase-like ATPase domain A9258_20190 PF00072 Response regulator receiver domain A9258_20190 PF01627 Hpt domain A9258_20190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_20190 PF00672 HAMP domain A9258_20190 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) A9258_20190 PF00512 His Kinase A (phospho-acceptor) domain A9258_20195 PF00072 Response regulator receiver domain A9258_20205 PF07690 Major Facilitator Superfamily A9258_20210 PF01914 MarC family integral membrane protein A9258_20220 PF13580 SIS domain A9258_20225 PF00367 phosphotransferase system, EIIB A9258_20225 PF02378 Phosphotransferase system, EIIC A9258_20240 PF01380 SIS domain A9258_20240 PF01418 Helix-turn-helix domain, rpiR family A9258_20245 PF01523 Putative modulator of DNA gyrase A9258_20250 PF00795 Carbon-nitrogen hydrolase A9258_20260 PF13116 Protein of unknown function A9258_20260 PF13502 AsmA-like C-terminal region A9258_20265 PF00575 S1 RNA binding domain A9258_20265 PF10150 Ribonuclease E/G family A9258_20270 PF02545 Maf-like protein A9258_20275 PF04093 rod shape-determining protein MreD A9258_20280 PF04085 rod shape-determining protein MreC A9258_20310 PF07963 Prokaryotic N-terminal methylation motif A9258_20310 PF14245 Type IV pilin PilA A9258_20315 PF07963 Prokaryotic N-terminal methylation motif A9258_20315 PF00114 Pilin (bacterial filament) A9258_20330 PF00482 Type II secretion system (T2SS), protein F A9258_20335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain A9258_20335 PF00437 Type II/IV secretion system protein A9258_20345 PF09077 Mu B transposition protein, C terminal A9258_20345 PF13401 AAA domain A9258_20350 PF00263 Bacterial type II and III secretion system protein A9258_20350 PF03958 Bacterial type II/III secretion system short domain A9258_20380 PF17157 Gammaproteobacterial periplasmic sensor domain A9258_20380 PF00990 Diguanylate cyclase, GGDEF domain A9258_20380 PF00563 EAL domain A9258_20385 PF00563 EAL domain A9258_20385 PF12792 CSS motif domain associated with EAL A9258_20390 PF01699 Sodium/calcium exchanger protein A9258_20395 PF00221 Aromatic amino acid lyase A9258_20400 PF17392 Urocanase C-terminal domain A9258_20400 PF17391 Urocanase N-terminal domain A9258_20400 PF01175 Urocanase Rossmann-like domain A9258_20405 PF00491 Arginase family A9258_20410 PF01979 Amidohydrolase family A9258_20415 PF00392 Bacterial regulatory proteins, gntR family A9258_20415 PF07702 UTRA domain A9258_20420 PF00484 Carbonic anhydrase A9258_20425 PF04545 Sigma-70, region 4 A9258_20425 PF04542 Sigma-70 region 2 A9258_20425 PF00140 Sigma-70 factor, region 1.2 A9258_20430 PF18075 FtsX extracellular domain A9258_20435 PF00005 ABC transporter A9258_20440 PF02881 SRP54-type protein, helical bundle domain A9258_20440 PF00448 SRP54-type protein, GTPase domain A9258_20460 PF00440 Bacterial regulatory proteins, tetR family A9258_20470 PF13091 PLD-like domain A9258_20475 PF01464 Transglycosylase SLT domain A9258_20485 PF02416 mttA/Hcf106 family A9258_20490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_20490 PF03466 LysR substrate binding domain A9258_20495 PF01914 MarC family integral membrane protein A9258_20500 PF10678 Protein of unknown function (DUF2492) A9258_20505 PF00375 Sodium:dicarboxylate symporter family A9258_20515 PF03466 LysR substrate binding domain A9258_20515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_20520 PF13533 Biotin-lipoyl like A9258_20525 PF07690 Major Facilitator Superfamily A9258_20530 PF07947 YhhN family A9258_20545 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A9258_20545 PF00326 Prolyl oligopeptidase family A9258_20560 PF00106 short chain dehydrogenase A9258_20565 PF03466 LysR substrate binding domain A9258_20565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_20570 PF02525 Flavodoxin-like fold A9258_20575 PF02254 TrkA-N domain A9258_20575 PF00999 Sodium/hydrogen exchanger family A9258_20615 PF01196 Ribosomal protein L17 A9258_20620 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain A9258_20620 PF01000 RNA polymerase Rpb3/RpoA insert domain A9258_20620 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain A9258_20625 PF01479 S4 domain A9258_20625 PF00163 Ribosomal protein S4/S9 N-terminal domain A9258_20630 PF00411 Ribosomal protein S11 A9258_20635 PF00416 Ribosomal protein S13/S18 A9258_20640 PF00344 SecY translocase A9258_20645 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A A9258_20650 PF00333 Ribosomal protein S5, N-terminal domain A9258_20650 PF03719 Ribosomal protein S5, C-terminal domain A9258_20655 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast A9258_20660 PF00347 Ribosomal protein L6 A9258_20665 PF00410 Ribosomal protein S8 A9258_20670 PF00253 Ribosomal protein S14p/S29e A9258_20675 PF00281 Ribosomal protein L5 A9258_20675 PF00673 ribosomal L5P family C-terminus A9258_20680 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 A9258_20680 PF00467 KOW motif A9258_20685 PF00238 Ribosomal protein L14p/L23e A9258_20690 PF00366 Ribosomal protein S17 A9258_20695 PF00831 Ribosomal L29 protein A9258_20700 PF00252 Ribosomal protein L16p/L10e A9258_20705 PF00189 Ribosomal protein S3, C-terminal domain A9258_20705 PF07650 KH domain A9258_20710 PF00237 Ribosomal protein L22p/L17e A9258_20715 PF00203 Ribosomal protein S19 A9258_20720 PF00181 Ribosomal Proteins L2, RNA binding domain A9258_20720 PF03947 Ribosomal Proteins L2, C-terminal domain A9258_20725 PF00276 Ribosomal protein L23 A9258_20730 PF00573 Ribosomal protein L4/L1 family A9258_20735 PF00297 Ribosomal protein L3 A9258_20740 PF00338 Ribosomal protein S10p/S20e A9258_20750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_20750 PF00672 HAMP domain A9258_20750 PF00512 His Kinase A (phospho-acceptor) domain A9258_20755 PF00072 Response regulator receiver domain A9258_20755 PF00486 Transcriptional regulatory protein, C terminal A9258_20760 PF01272 Transcription elongation factor, GreA/GreB, C-term A9258_20760 PF03449 Transcription elongation factor, N-terminal A9258_20765 PF09371 Tex-like protein N-terminal domain A9258_20765 PF16921 Tex protein YqgF-like domain A9258_20765 PF00575 S1 RNA binding domain A9258_20765 PF17674 HHH domain A9258_20785 PF00561 alpha/beta hydrolase fold A9258_20790 PF00156 Phosphoribosyl transferase domain A9258_20795 PF01106 NifU-like domain A9258_20795 PF01521 Iron-sulphur cluster biosynthesis A9258_20800 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus A9258_20800 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus A9258_20805 PF02556 Preprotein translocase subunit SecB A9258_20810 PF00581 Rhodanese-like domain A9258_20815 PF01676 Metalloenzyme superfamily A9258_20815 PF06415 BPG-independent PGAM N-terminus (iPGM_N) A9258_20820 PF01551 Peptidase family M23 A9258_20830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family A9258_20830 PF00356 Bacterial regulatory proteins, lacI family A9258_20835 PF01081 KDPG and KHG aldolase A9258_20840 PF00920 Dehydratase family A9258_20845 PF01202 Shikimate kinase A9258_20850 PF02447 GntP family permease A9258_20855 PF13091 PLD-like domain A9258_20860 PF00270 DEAD/DEAH box helicase A9258_20860 PF17191 RecG wedge domain A9258_20860 PF00271 Helicase conserved C-terminal domain A9258_20870 PF09500 Putative thioesterase (yiiD_Cterm) A9258_20870 PF00583 Acetyltransferase (GNAT) family A9258_20880 PF02580 D-Tyr-tRNA(Tyr) deacylase A9258_20885 PF03631 Virulence factor BrkB A9258_20895 PF00120 Glutamine synthetase, catalytic domain A9258_20895 PF03951 Glutamine synthetase, beta-Grasp domain A9258_20905 PF00512 His Kinase A (phospho-acceptor) domain A9258_20905 PF00989 PAS fold A9258_20905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_20910 PF00158 Sigma-54 interaction domain A9258_20910 PF02954 Bacterial regulatory protein, Fis family A9258_20910 PF00072 Response regulator receiver domain A9258_20915 PF00962 Adenosine/AMP deaminase A9258_20920 PF04055 Radical SAM superfamily A9258_20920 PF06969 HemN C-terminal domain A9258_20925 PF10675 Protein of unknown function (DUF2489) A9258_20930 PF04220 Der GTPase activator (YihI) A9258_20940 PF00034 Cytochrome c A9258_20945 PF01926 50S ribosome-binding GTPase A9258_20950 PF07369 Protein of unknown function (DUF1488) A9258_20955 PF01488 Shikimate / quinate 5-dehydrogenase A9258_20955 PF08501 Shikimate dehydrogenase substrate binding domain A9258_20955 PF18317 Shikimate 5'-dehydrogenase C-terminal domain A9258_20960 PF01218 Coproporphyrinogen III oxidase A9258_20965 PF01300 Telomere recombination A9258_20970 PF00731 AIR carboxylase A9258_20975 PF01396 Topoisomerase DNA binding C4 zinc finger A9258_20980 PF04361 Protein of unknown function (DUF494) A9258_20985 PF02481 DNA recombination-mediator protein A A9258_20985 PF17782 DprA winged helix domain A9258_20995 PF01327 Polypeptide deformylase A9258_21000 PF00551 Formyl transferase A9258_21000 PF02911 Formyl transferase, C-terminal domain A9258_21005 PF01189 16S rRNA methyltransferase RsmB/F A9258_21005 PF01029 NusB family A9258_21010 PF02254 TrkA-N domain A9258_21010 PF02080 TrkA-C domain A9258_21015 PF02386 Cation transport protein A9258_21020 PF02646 RmuC family A9258_21035 PF02082 Transcriptional regulator A9258_21040 PF00294 pfkB family carbohydrate kinase A9258_21045 PF05222 Alanine dehydrogenase/PNT, N-terminal domain A9258_21045 PF01262 Alanine dehydrogenase/PNT, C-terminal domain A9258_21050 PF00117 Glutamine amidotransferase class-I A9258_21050 PF00958 GMP synthase C terminal domain A9258_21050 PF02540 NAD synthase A9258_21055 PF00171 Aldehyde dehydrogenase family A9258_21060 PF00202 Aminotransferase class-III A9258_21065 PF01381 Helix-turn-helix A9258_21065 PF07883 Cupin domain A9258_21070 PF00171 Aldehyde dehydrogenase family A9258_21080 PF00892 EamA-like transporter family A9258_21085 PF12833 Helix-turn-helix domain A9258_21090 PF01810 LysE type translocator A9258_21095 PF00690 Cation transporter/ATPase, N-terminus A9258_21095 PF00689 Cation transporting ATPase, C-terminus A9258_21100 PF04143 Sulphur transport A9258_21105 PF01810 LysE type translocator A9258_21115 PF06206 CpeT/CpcT family (DUF1001) A9258_21140 PF14001 YdfZ protein A9258_21150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_21150 PF03466 LysR substrate binding domain A9258_21160 PF13361 UvrD-like helicase C-terminal domain A9258_21160 PF00580 UvrD/REP helicase N-terminal domain A9258_21185 PF03466 LysR substrate binding domain A9258_21185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_21190 PF00107 Zinc-binding dehydrogenase A9258_21190 PF08240 Alcohol dehydrogenase GroES-like domain A9258_21195 PF00756 Putative esterase A9258_21205 PF12867 DinB superfamily A9258_21205 PF03781 Sulfatase-modifying factor enzyme 1 A9258_21210 PF13593 SBF-like CPA transporter family (DUF4137) A9258_21215 PF13520 Amino acid permease A9258_21220 PF01588 Putative tRNA binding domain A9258_21225 PF13520 Amino acid permease A9258_21230 PF04074 YhcH/YjgK/YiaL A9258_21235 PF02837 Glycosyl hydrolases family 2, sugar binding domain A9258_21235 PF02836 Glycosyl hydrolases family 2, TIM barrel domain A9258_21235 PF00703 Glycosyl hydrolases family 2 A9258_21235 PF16353 Domain of unknown function(DUF4981) A9258_21235 PF02929 Beta galactosidase small chain A9258_21240 PF00356 Bacterial regulatory proteins, lacI family A9258_21275 PF00132 Bacterial transferase hexapeptide (six repeats) A9258_21280 PF00476 DNA polymerase family A A9258_21280 PF01612 3'-5' exonuclease A9258_21280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain A9258_21280 PF01367 5'-3' exonuclease, C-terminal SAM fold A9258_21290 PF06005 Cell division protein ZapB A9258_21300 PF06426 Serine acetyltransferase, N-terminal A9258_21300 PF00132 Bacterial transferase hexapeptide (six repeats) A9258_21305 PF16916 Dimerisation domain of Zinc Transporter A9258_21305 PF01545 Cation efflux family A9258_21310 PF00486 Transcriptional regulatory protein, C terminal A9258_21310 PF00072 Response regulator receiver domain A9258_21315 PF00672 HAMP domain A9258_21315 PF16527 Two-component sensor protein CpxA, periplasmic domain A9258_21315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_21315 PF00512 His Kinase A (phospho-acceptor) domain A9258_21320 PF00588 SpoU rRNA Methylase family A9258_21325 PF01554 MatE A9258_21330 PF02630 SCO1/SenC A9258_21340 PF00717 Peptidase S24-like A9258_21340 PF01726 LexA DNA binding domain A9258_21345 PF01553 Acyltransferase A9258_21350 PF01040 UbiA prenyltransferase family A9258_21355 PF04345 Chorismate lyase A9258_21360 PF03748 Flagellar basal body-associated protein FliL A9258_21370 PF08240 Alcohol dehydrogenase GroES-like domain A9258_21370 PF00107 Zinc-binding dehydrogenase A9258_21375 PF00356 Bacterial regulatory proteins, lacI family A9258_21375 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family A9258_21380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A9258_21390 PF03611 PTS system sugar-specific permease component A9258_21395 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) A9258_21400 PF01075 Glycosyltransferase family 9 (heptosyltransferase) A9258_21405 PF00535 Glycosyl transferase family 2 A9258_21410 PF01075 Glycosyltransferase family 9 (heptosyltransferase) A9258_21415 PF01467 Cytidylyltransferase-like A9258_21420 PF04393 Protein of unknown function (DUF535) A9258_21425 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain A9258_21425 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain A9258_21425 PF06827 Zinc finger found in FPG and IleRS A9258_21435 PF00471 Ribosomal protein L33 A9258_21440 PF04002 RadC-like JAB domain A9258_21445 PF04127 DNA / pantothenate metabolism flavoprotein A9258_21445 PF02441 Flavoprotein A9258_21450 PF00692 dUTPase A9258_21455 PF00440 Bacterial regulatory proteins, tetR family A9258_21460 PF00924 Mechanosensitive ion channel A9258_21460 PF05552 Conserved TM helix A9258_21470 PF00342 Phosphoglucose isomerase A9258_21475 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain A9258_21475 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain A9258_21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A9258_21480 PF03466 LysR substrate binding domain A9258_21495 PF13380 CoA binding domain A9258_21495 PF13607 Succinyl-CoA ligase like flavodoxin domain A9258_21495 PF00583 Acetyltransferase (GNAT) family A9258_21520 PF12724 Flavodoxin domain A9258_21525 PF02386 Cation transport protein A9258_21530 PF01205 Uncharacterized protein family UPF0029 A9258_21530 PF09186 Domain of unknown function (DUF1949) A9258_21535 PF00557 Metallopeptidase family M24 A9258_21540 PF13193 AMP-binding enzyme C-terminal domain A9258_21540 PF00501 AMP-binding enzyme A9258_21545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A9258_21545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A9258_21545 PF00378 Enoyl-CoA hydratase/isomerase A9258_21550 PF00108 Thiolase, N-terminal domain A9258_21550 PF02803 Thiolase, C-terminal domain A9258_21555 PF00072 Response regulator receiver domain A9258_21555 PF00486 Transcriptional regulatory protein, C terminal A9258_21560 PF00512 His Kinase A (phospho-acceptor) domain A9258_21560 PF00672 HAMP domain A9258_21560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_21565 PF01547 Bacterial extracellular solute-binding protein A9258_21575 PF01206 Sulfurtransferase TusA A9258_21580 PF01042 Endoribonuclease L-PSP A9258_21585 PF13488 Glycine zipper A9258_21585 PF00691 OmpA family A9258_21590 PF00857 Isochorismatase family A9258_21595 PF03352 Methyladenine glycosylase A9258_21600 PF02091 Glycyl-tRNA synthetase alpha subunit A9258_21605 PF02092 Glycyl-tRNA synthetase beta subunit A9258_21605 PF05746 DALR anticodon binding domain A9258_21620 PF14306 PUA-like domain A9258_21620 PF01747 ATP-sulfurylase A9258_21640 PF03222 Tryptophan/tyrosine permease family A9258_21645 PF12801 4Fe-4S binding domain A9258_21655 PF07992 Pyridine nucleotide-disulphide oxidoreductase A9258_21655 PF18113 Rubredoxin binding C-terminal domain A9258_21660 PF00753 Metallo-beta-lactamase superfamily A9258_21660 PF00301 Rubredoxin A9258_21660 PF00258 Flavodoxin A9258_21665 PF01590 GAF domain A9258_21665 PF00158 Sigma-54 interaction domain A9258_21670 PF00392 Bacterial regulatory proteins, gntR family A9258_21670 PF07702 UTRA domain A9258_21675 PF00367 phosphotransferase system, EIIB A9258_21675 PF02378 Phosphotransferase system, EIIC A9258_21680 PF11975 Family 4 glycosyl hydrolase C-terminal domain A9258_21680 PF02056 Family 4 glycosyl hydrolase A9258_21685 PF00356 Bacterial regulatory proteins, lacI family A9258_21690 PF13458 Periplasmic binding protein A9258_21695 PF02653 Branched-chain amino acid transport system / permease component A9258_21700 PF02653 Branched-chain amino acid transport system / permease component A9258_21700 PF11862 Domain of unknown function (DUF3382) A9258_21705 PF12399 Branched-chain amino acid ATP-binding cassette transporter A9258_21705 PF00005 ABC transporter A9258_21710 PF00005 ABC transporter A9258_21725 PF00581 Rhodanese-like domain A9258_21730 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease A9258_21730 PF01694 Rhomboid family A9258_21735 PF12262 Bacterial virulence factor lipase N-terminal A9258_21740 PF04380 Membrane fusogenic activity A9258_21745 PF00175 Oxidoreductase NAD-binding domain A9258_21750 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase A9258_21760 PF07497 Rho termination factor, RNA-binding domain A9258_21760 PF07498 Rho termination factor, N-terminal domain A9258_21760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A9258_21765 PF00085 Thioredoxin A9258_21770 PF00271 Helicase conserved C-terminal domain A9258_21770 PF00270 DEAD/DEAH box helicase A9258_21775 PF02541 Ppx/GppA phosphatase family A9258_21790 PF04445 Putative SAM-dependent methyltransferase A9258_21795 PF03707 Bacterial signalling protein N terminal repeat A9258_21795 PF00990 Diguanylate cyclase, GGDEF domain A9258_21795 PF00563 EAL domain A9258_21800 PF01432 Peptidase family M3 A9258_21805 PF00490 Delta-aminolevulinic acid dehydratase A9258_21810 PF01026 TatD related DNase A9258_21815 PF00902 Sec-independent protein translocase protein (TatC) A9258_21820 PF02416 mttA/Hcf106 family A9258_21825 PF02416 mttA/Hcf106 family A9258_21830 PF03109 ABC1 family A9258_21835 PF02036 SCP-2 sterol transfer family A9258_21840 PF01209 ubiE/COQ5 methyltransferase family A9258_21845 PF02537 CrcB-like protein, Camphor Resistance (CrcB) A9258_21850 PF07969 Amidohydrolase family A9258_21890 PF03544 Gram-negative bacterial TonB protein C-terminal A9258_21895 PF02472 Biopolymer transport protein ExbD/TolR A9258_21900 PF01618 MotA/TolQ/ExbB proton channel family A9258_21905 PF01618 MotA/TolQ/ExbB proton channel family A9258_21915 PF00196 Bacterial regulatory proteins, luxR family A9258_21915 PF03472 Autoinducer binding domain A9258_21920 PF01380 SIS domain A9258_21925 PF08220 DeoR-like helix-turn-helix domain A9258_21925 PF00455 DeoR C terminal sensor domain A9258_21930 PF00486 Transcriptional regulatory protein, C terminal A9258_21930 PF00072 Response regulator receiver domain A9258_21935 PF00672 HAMP domain A9258_21935 PF00512 His Kinase A (phospho-acceptor) domain A9258_21935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A9258_21940 PF00905 Penicillin binding protein transpeptidase domain A9258_21945 PF06123 Inner membrane protein CreD A9258_21950 PF14602 Hexapeptide repeat of succinyl-transferase A9258_21950 PF12804 MobA-like NTP transferase domain A9258_21950 PF00132 Bacterial transferase hexapeptide (six repeats) A9258_21955 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain A9258_21955 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A9258_21960 PF02874 ATP synthase alpha/beta family, beta-barrel domain A9258_21960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A9258_21965 PF00231 ATP synthase A9258_21970 PF00306 ATP synthase alpha/beta chain, C terminal domain A9258_21970 PF02874 ATP synthase alpha/beta family, beta-barrel domain A9258_21970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A9258_21975 PF00213 ATP synthase delta (OSCP) subunit A9258_21980 PF00430 ATP synthase B/B' CF(0) A9258_21985 PF00137 ATP synthase subunit C A9258_21990 PF00119 ATP synthase A chain A9258_22000 PF17762 HTH domain found in ParB protein A9258_22000 PF02195 ParB-like nuclease domain A9258_22005 PF13614 AAA domain A9258_22010 PF02527 rRNA small subunit methyltransferase G A9258_22015 PF01134 Glucose inhibited division protein A A9258_22015 PF13932 GidA associated domain A9258_22020 PF00258 Flavodoxin A9258_22025 PF00593 TonB dependent receptor A9258_22025 PF07715 TonB-dependent Receptor Plug Domain A9258_22030 PF00005 ABC transporter A9258_22035 PF00005 ABC transporter A9258_22045 PF01032 FecCD transport family A9258_22050 PF10396 GTP-binding protein TrmE N-terminus A9258_22050 PF12631 MnmE helical domain A9258_22050 PF01926 50S ribosome-binding GTPase A9258_22055 PF02096 60Kd inner membrane protein A9258_22055 PF14849 YidC periplasmic domain A9258_22060 PF00825 Ribonuclease P A9258_22070 PF00528 Binding-protein-dependent transport system inner membrane component A9258_22075 PF00497 Bacterial extracellular solute-binding proteins, family 3