locus-tag class description AHML_00005 PF00308 Bacterial dnaA protein AHML_00005 PF08299 Bacterial dnaA protein helix-turn-helix AHML_00005 PF11638 DnaA N-terminal domain AHML_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AHML_00010 PF02767 DNA polymerase III beta subunit, central domain AHML_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AHML_00015 PF02463 RecF/RecN/SMC N terminal domain AHML_00020 PF00204 DNA gyrase B AHML_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AHML_00020 PF18053 DNA gyrase B subunit insert domain AHML_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_00020 PF01751 Toprim domain AHML_00030 PF08279 HTH domain AHML_00030 PF13280 WYL domain AHML_00035 PF00011 Hsp20/alpha crystallin family AHML_00040 PF00011 Hsp20/alpha crystallin family AHML_00045 PF00155 Aminotransferase class I and II AHML_00060 PF07690 Major Facilitator Superfamily AHML_00065 PF00486 Transcriptional regulatory protein, C terminal AHML_00065 PF00072 Response regulator receiver domain AHML_00070 PF00512 His Kinase A (phospho-acceptor) domain AHML_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_00070 PF13492 GAF domain AHML_00070 PF13493 Domain of unknown function (DUF4118) AHML_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain AHML_00075 PF02669 K+-transporting ATPase, c chain AHML_00085 PF03814 Potassium-transporting ATPase A subunit AHML_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHML_00100 PF00512 His Kinase A (phospho-acceptor) domain AHML_00100 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_00105 PF00873 AcrB/AcrD/AcrF family AHML_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_00115 PF00440 Bacterial regulatory proteins, tetR family AHML_00125 PF02887 Pyruvate kinase, alpha/beta domain AHML_00125 PF00224 Pyruvate kinase, barrel domain AHML_00130 PF07690 Major Facilitator Superfamily AHML_00140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_00140 PF00512 His Kinase A (phospho-acceptor) domain AHML_00140 PF00672 HAMP domain AHML_00145 PF14532 Sigma-54 interaction domain AHML_00145 PF00072 Response regulator receiver domain AHML_00145 PF02954 Bacterial regulatory protein, Fis family AHML_00160 PF12146 Serine aminopeptidase, S33 AHML_00165 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_00170 PF12105 SpoU, rRNA methylase, C-terminal AHML_00170 PF00588 SpoU rRNA Methylase family AHML_00175 PF13291 ACT domain AHML_00175 PF04607 Region found in RelA / SpoT proteins AHML_00175 PF02824 TGS domain AHML_00180 PF01192 RNA polymerase Rpb6 AHML_00185 PF00625 Guanylate kinase AHML_00190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AHML_00205 PF00892 EamA-like transporter family AHML_00225 PF03466 LysR substrate binding domain AHML_00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_00230 PF00579 tRNA synthetases class I (W and Y) AHML_00235 PF00582 Universal stress protein family AHML_00240 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AHML_00240 PF07055 Enoyl reductase FAD binding domain AHML_00240 PF12241 Trans-2-enoyl-CoA reductase catalytic region AHML_00245 PF00990 Diguanylate cyclase, GGDEF domain AHML_00250 PF00210 Ferritin-like domain AHML_00260 PF08722 TnsA endonuclease N terminal AHML_00260 PF08721 TnsA endonuclease C terminal AHML_00265 PF00665 Integrase core domain AHML_00270 PF11426 Tn7 transposition regulator TnsC AHML_00270 PF13401 AAA domain AHML_00280 PF13657 HipA N-terminal domain AHML_00280 PF07804 HipA-like C-terminal domain AHML_00290 PF12008 Type I restriction and modification enzyme - subunit R C terminal AHML_00290 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AHML_00290 PF18766 SWI2/SNF2 ATPase AHML_00300 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AHML_00300 PF00270 DEAD/DEAH box helicase AHML_00300 PF17191 RecG wedge domain AHML_00315 PF02384 N-6 DNA Methylase AHML_00315 PF12161 HsdM N-terminal domain AHML_00325 PF07690 Major Facilitator Superfamily AHML_00330 PF01810 LysE type translocator AHML_00345 PF16967 E-set like domain AHML_00345 PF15976 CS1-pili formation C-terminal AHML_00350 PF18649 EcpB C-terminal domain AHML_00355 PF16449 Fimbrillin MatB AHML_00360 PF00072 Response regulator receiver domain AHML_00360 PF00196 Bacterial regulatory proteins, luxR family AHML_00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_00365 PF00512 His Kinase A (phospho-acceptor) domain AHML_00365 PF01627 Hpt domain AHML_00365 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_00365 PF00072 Response regulator receiver domain AHML_00365 PF00989 PAS fold AHML_00375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_00375 PF06580 Histidine kinase AHML_00375 PF07694 5TMR of 5TMR-LYT AHML_00380 PF04397 LytTr DNA-binding domain AHML_00380 PF00072 Response regulator receiver domain AHML_00385 PF07690 Major Facilitator Superfamily AHML_00390 PF02222 ATP-grasp domain AHML_00390 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AHML_00395 PF00731 AIR carboxylase AHML_00410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_00410 PF03466 LysR substrate binding domain AHML_00415 PF07715 TonB-dependent Receptor Plug Domain AHML_00415 PF00593 TonB dependent receptor AHML_00420 PF01177 Asp/Glu/Hydantoin racemase AHML_00435 PF07969 Amidohydrolase family AHML_00440 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AHML_00445 PF01209 ubiE/COQ5 methyltransferase family AHML_00450 PF02036 SCP-2 sterol transfer family AHML_00455 PF03109 ABC1 family AHML_00460 PF02416 mttA/Hcf106 family AHML_00465 PF02416 mttA/Hcf106 family AHML_00470 PF00902 Sec-independent protein translocase protein (TatC) AHML_00475 PF01026 TatD related DNase AHML_00480 PF00490 Delta-aminolevulinic acid dehydratase AHML_00485 PF01432 Peptidase family M3 AHML_00490 PF03707 Bacterial signalling protein N terminal repeat AHML_00490 PF00563 EAL domain AHML_00490 PF00990 Diguanylate cyclase, GGDEF domain AHML_00495 PF04445 Putative SAM-dependent methyltransferase AHML_00510 PF02541 Ppx/GppA phosphatase family AHML_00515 PF00270 DEAD/DEAH box helicase AHML_00515 PF00271 Helicase conserved C-terminal domain AHML_00520 PF00085 Thioredoxin AHML_00525 PF07497 Rho termination factor, RNA-binding domain AHML_00525 PF07498 Rho termination factor, N-terminal domain AHML_00525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AHML_00535 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AHML_00540 PF00175 Oxidoreductase NAD-binding domain AHML_00545 PF04380 Membrane fusogenic activity AHML_00550 PF12262 Bacterial virulence factor lipase N-terminal AHML_00555 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AHML_00555 PF01694 Rhomboid family AHML_00560 PF00581 Rhodanese-like domain AHML_00575 PF00005 ABC transporter AHML_00580 PF00005 ABC transporter AHML_00580 PF12399 Branched-chain amino acid ATP-binding cassette transporter AHML_00585 PF11862 Domain of unknown function (DUF3382) AHML_00585 PF02653 Branched-chain amino acid transport system / permease component AHML_00590 PF02653 Branched-chain amino acid transport system / permease component AHML_00595 PF13458 Periplasmic binding protein AHML_00600 PF00356 Bacterial regulatory proteins, lacI family AHML_00605 PF11975 Family 4 glycosyl hydrolase C-terminal domain AHML_00605 PF02056 Family 4 glycosyl hydrolase AHML_00610 PF00367 phosphotransferase system, EIIB AHML_00610 PF02378 Phosphotransferase system, EIIC AHML_00615 PF07702 UTRA domain AHML_00615 PF00392 Bacterial regulatory proteins, gntR family AHML_00620 PF01590 GAF domain AHML_00620 PF00158 Sigma-54 interaction domain AHML_00625 PF00258 Flavodoxin AHML_00625 PF00753 Metallo-beta-lactamase superfamily AHML_00625 PF00301 Rubredoxin AHML_00630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_00630 PF18113 Rubredoxin binding C-terminal domain AHML_00640 PF12801 4Fe-4S binding domain AHML_00645 PF03222 Tryptophan/tyrosine permease family AHML_00665 PF14306 PUA-like domain AHML_00665 PF01747 ATP-sulfurylase AHML_00680 PF02092 Glycyl-tRNA synthetase beta subunit AHML_00680 PF05746 DALR anticodon binding domain AHML_00685 PF02091 Glycyl-tRNA synthetase alpha subunit AHML_00690 PF03352 Methyladenine glycosylase AHML_00695 PF00857 Isochorismatase family AHML_00700 PF13488 Glycine zipper AHML_00700 PF00691 OmpA family AHML_00705 PF01042 Endoribonuclease L-PSP AHML_00710 PF01206 Sulfurtransferase TusA AHML_00720 PF01547 Bacterial extracellular solute-binding protein AHML_00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_00725 PF00512 His Kinase A (phospho-acceptor) domain AHML_00725 PF00672 HAMP domain AHML_00730 PF00072 Response regulator receiver domain AHML_00730 PF00486 Transcriptional regulatory protein, C terminal AHML_00735 PF00108 Thiolase, N-terminal domain AHML_00735 PF02803 Thiolase, C-terminal domain AHML_00740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AHML_00740 PF00378 Enoyl-CoA hydratase/isomerase AHML_00740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AHML_00745 PF00501 AMP-binding enzyme AHML_00745 PF13193 AMP-binding enzyme C-terminal domain AHML_00750 PF00557 Metallopeptidase family M24 AHML_00755 PF01205 Uncharacterized protein family UPF0029 AHML_00755 PF09186 Domain of unknown function (DUF1949) AHML_00760 PF02386 Cation transport protein AHML_00765 PF12724 Flavodoxin domain AHML_00770 PF13607 Succinyl-CoA ligase like flavodoxin domain AHML_00770 PF13380 CoA binding domain AHML_00770 PF00583 Acetyltransferase (GNAT) family AHML_00785 PF03466 LysR substrate binding domain AHML_00785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_00790 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AHML_00790 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AHML_00795 PF00342 Phosphoglucose isomerase AHML_00810 PF05552 Conserved TM helix AHML_00810 PF00924 Mechanosensitive ion channel AHML_00815 PF00440 Bacterial regulatory proteins, tetR family AHML_00820 PF00692 dUTPase AHML_00825 PF04127 DNA / pantothenate metabolism flavoprotein AHML_00825 PF02441 Flavoprotein AHML_00830 PF04002 RadC-like JAB domain AHML_00835 PF00830 Ribosomal L28 family AHML_00840 PF00471 Ribosomal protein L33 AHML_00850 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AHML_00850 PF06827 Zinc finger found in FPG and IleRS AHML_00850 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AHML_00855 PF04393 Protein of unknown function (DUF535) AHML_00860 PF01467 Cytidylyltransferase-like AHML_00865 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AHML_00870 PF00535 Glycosyl transferase family 2 AHML_00875 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AHML_00880 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AHML_00885 PF03611 PTS system sugar-specific permease component AHML_00895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHML_00900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHML_00900 PF00356 Bacterial regulatory proteins, lacI family AHML_00905 PF08240 Alcohol dehydrogenase GroES-like domain AHML_00905 PF00107 Zinc-binding dehydrogenase AHML_00925 PF03748 Flagellar basal body-associated protein FliL AHML_00930 PF04345 Chorismate lyase AHML_00935 PF01040 UbiA prenyltransferase family AHML_00940 PF01553 Acyltransferase AHML_00945 PF00717 Peptidase S24-like AHML_00945 PF01726 LexA DNA binding domain AHML_00960 PF02630 SCO1/SenC AHML_00965 PF01554 MatE AHML_00970 PF00588 SpoU rRNA Methylase family AHML_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_00975 PF00672 HAMP domain AHML_00975 PF00512 His Kinase A (phospho-acceptor) domain AHML_00975 PF16527 Two-component sensor protein CpxA, periplasmic domain AHML_00980 PF00486 Transcriptional regulatory protein, C terminal AHML_00980 PF00072 Response regulator receiver domain AHML_00985 PF01545 Cation efflux family AHML_00985 PF16916 Dimerisation domain of Zinc Transporter AHML_00990 PF06426 Serine acetyltransferase, N-terminal AHML_00990 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_01000 PF06005 Cell division protein ZapB AHML_01010 PF00476 DNA polymerase family A AHML_01010 PF01367 5'-3' exonuclease, C-terminal SAM fold AHML_01010 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AHML_01010 PF01612 3'-5' exonuclease AHML_01015 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_01020 PF00356 Bacterial regulatory proteins, lacI family AHML_01025 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AHML_01025 PF00703 Glycosyl hydrolases family 2 AHML_01025 PF02837 Glycosyl hydrolases family 2, sugar binding domain AHML_01025 PF02929 Beta galactosidase small chain AHML_01025 PF16353 Domain of unknown function(DUF4981) AHML_01030 PF04074 YhcH/YjgK/YiaL AHML_01035 PF13520 Amino acid permease AHML_01040 PF01588 Putative tRNA binding domain AHML_01045 PF13520 Amino acid permease AHML_01050 PF13593 SBF-like CPA transporter family (DUF4137) AHML_01055 PF12867 DinB superfamily AHML_01055 PF03781 Sulfatase-modifying factor enzyme 1 AHML_01065 PF00756 Putative esterase AHML_01070 PF00107 Zinc-binding dehydrogenase AHML_01070 PF08240 Alcohol dehydrogenase GroES-like domain AHML_01075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_01075 PF03466 LysR substrate binding domain AHML_01100 PF00580 UvrD/REP helicase N-terminal domain AHML_01100 PF13361 UvrD-like helicase C-terminal domain AHML_01110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_01110 PF03466 LysR substrate binding domain AHML_01120 PF14001 YdfZ protein AHML_01145 PF06206 CpeT/CpcT family (DUF1001) AHML_01155 PF01810 LysE type translocator AHML_01160 PF04143 Sulphur transport AHML_01165 PF00690 Cation transporter/ATPase, N-terminus AHML_01165 PF00689 Cation transporting ATPase, C-terminus AHML_01170 PF01810 LysE type translocator AHML_01175 PF12833 Helix-turn-helix domain AHML_01180 PF00892 EamA-like transporter family AHML_01190 PF00171 Aldehyde dehydrogenase family AHML_01195 PF07883 Cupin domain AHML_01195 PF01381 Helix-turn-helix AHML_01200 PF00202 Aminotransferase class-III AHML_01205 PF00171 Aldehyde dehydrogenase family AHML_01210 PF02540 NAD synthase AHML_01210 PF00117 Glutamine amidotransferase class-I AHML_01210 PF00958 GMP synthase C terminal domain AHML_01215 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AHML_01215 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AHML_01220 PF00294 pfkB family carbohydrate kinase AHML_01225 PF02082 Transcriptional regulator AHML_01240 PF02646 RmuC family AHML_01245 PF02386 Cation transport protein AHML_01250 PF02254 TrkA-N domain AHML_01250 PF02080 TrkA-C domain AHML_01255 PF01029 NusB family AHML_01255 PF01189 16S rRNA methyltransferase RsmB/F AHML_01260 PF00551 Formyl transferase AHML_01260 PF02911 Formyl transferase, C-terminal domain AHML_01265 PF01327 Polypeptide deformylase AHML_01275 PF02481 DNA recombination-mediator protein A AHML_01275 PF17782 DprA winged helix domain AHML_01280 PF04361 Protein of unknown function (DUF494) AHML_01285 PF01396 Topoisomerase DNA binding C4 zinc finger AHML_01290 PF00731 AIR carboxylase AHML_01295 PF01300 Telomere recombination AHML_01300 PF01218 Coproporphyrinogen III oxidase AHML_01305 PF01488 Shikimate / quinate 5-dehydrogenase AHML_01305 PF08501 Shikimate dehydrogenase substrate binding domain AHML_01305 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AHML_01310 PF07369 Protein of unknown function (DUF1488) AHML_01315 PF01926 50S ribosome-binding GTPase AHML_01320 PF00034 Cytochrome c AHML_01330 PF04220 Der GTPase activator (YihI) AHML_01335 PF10675 Protein of unknown function (DUF2489) AHML_01340 PF04055 Radical SAM superfamily AHML_01340 PF06969 HemN C-terminal domain AHML_01345 PF00962 Adenosine/AMP deaminase AHML_01350 PF00072 Response regulator receiver domain AHML_01350 PF00158 Sigma-54 interaction domain AHML_01350 PF02954 Bacterial regulatory protein, Fis family AHML_01355 PF00512 His Kinase A (phospho-acceptor) domain AHML_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_01355 PF00989 PAS fold AHML_01365 PF03951 Glutamine synthetase, beta-Grasp domain AHML_01365 PF00120 Glutamine synthetase, catalytic domain AHML_01375 PF03631 Virulence factor BrkB AHML_01380 PF02580 D-Tyr-tRNA(Tyr) deacylase AHML_01390 PF09500 Putative thioesterase (yiiD_Cterm) AHML_01390 PF00583 Acetyltransferase (GNAT) family AHML_01400 PF17191 RecG wedge domain AHML_01400 PF00270 DEAD/DEAH box helicase AHML_01400 PF00271 Helicase conserved C-terminal domain AHML_01405 PF13091 PLD-like domain AHML_01410 PF02447 GntP family permease AHML_01415 PF01202 Shikimate kinase AHML_01420 PF00920 Dehydratase family AHML_01425 PF01081 KDPG and KHG aldolase AHML_01430 PF00356 Bacterial regulatory proteins, lacI family AHML_01430 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHML_01440 PF01551 Peptidase family M23 AHML_01445 PF01676 Metalloenzyme superfamily AHML_01445 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AHML_01450 PF00581 Rhodanese-like domain AHML_01455 PF02556 Preprotein translocase subunit SecB AHML_01460 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AHML_01460 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AHML_01465 PF01106 NifU-like domain AHML_01465 PF01521 Iron-sulphur cluster biosynthesis AHML_01470 PF00156 Phosphoribosyl transferase domain AHML_01475 PF00561 alpha/beta hydrolase fold AHML_01495 PF16921 Tex protein YqgF-like domain AHML_01495 PF09371 Tex-like protein N-terminal domain AHML_01495 PF00575 S1 RNA binding domain AHML_01495 PF17674 HHH domain AHML_01500 PF03449 Transcription elongation factor, N-terminal AHML_01500 PF01272 Transcription elongation factor, GreA/GreB, C-term AHML_01505 PF00072 Response regulator receiver domain AHML_01505 PF00486 Transcriptional regulatory protein, C terminal AHML_01510 PF00672 HAMP domain AHML_01510 PF00512 His Kinase A (phospho-acceptor) domain AHML_01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_01520 PF00338 Ribosomal protein S10p/S20e AHML_01525 PF00297 Ribosomal protein L3 AHML_01530 PF00573 Ribosomal protein L4/L1 family AHML_01535 PF00276 Ribosomal protein L23 AHML_01540 PF00181 Ribosomal Proteins L2, RNA binding domain AHML_01540 PF03947 Ribosomal Proteins L2, C-terminal domain AHML_01545 PF00203 Ribosomal protein S19 AHML_01550 PF00237 Ribosomal protein L22p/L17e AHML_01555 PF00189 Ribosomal protein S3, C-terminal domain AHML_01555 PF07650 KH domain AHML_01560 PF00252 Ribosomal protein L16p/L10e AHML_01565 PF00831 Ribosomal L29 protein AHML_01570 PF00366 Ribosomal protein S17 AHML_01575 PF00238 Ribosomal protein L14p/L23e AHML_01580 PF00467 KOW motif AHML_01580 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AHML_01585 PF00281 Ribosomal protein L5 AHML_01585 PF00673 ribosomal L5P family C-terminus AHML_01590 PF00253 Ribosomal protein S14p/S29e AHML_01595 PF00410 Ribosomal protein S8 AHML_01600 PF00347 Ribosomal protein L6 AHML_01605 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AHML_01610 PF03719 Ribosomal protein S5, C-terminal domain AHML_01610 PF00333 Ribosomal protein S5, N-terminal domain AHML_01615 PF00327 Ribosomal protein L30p/L7e AHML_01620 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AHML_01625 PF00344 SecY translocase AHML_01630 PF00444 Ribosomal protein L36 AHML_01635 PF00416 Ribosomal protein S13/S18 AHML_01640 PF00411 Ribosomal protein S11 AHML_01645 PF00163 Ribosomal protein S4/S9 N-terminal domain AHML_01645 PF01479 S4 domain AHML_01650 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AHML_01650 PF01000 RNA polymerase Rpb3/RpoA insert domain AHML_01650 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AHML_01655 PF01196 Ribosomal protein L17 AHML_01675 PF02254 TrkA-N domain AHML_01675 PF00999 Sodium/hydrogen exchanger family AHML_01680 PF02525 Flavodoxin-like fold AHML_01685 PF03466 LysR substrate binding domain AHML_01685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_01690 PF00106 short chain dehydrogenase AHML_01705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AHML_01705 PF00326 Prolyl oligopeptidase family AHML_01730 PF07947 YhhN family AHML_01735 PF07690 Major Facilitator Superfamily AHML_01740 PF13533 Biotin-lipoyl like AHML_01745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_01745 PF03466 LysR substrate binding domain AHML_01755 PF00375 Sodium:dicarboxylate symporter family AHML_01760 PF10678 Protein of unknown function (DUF2492) AHML_01765 PF01914 MarC family integral membrane protein AHML_01770 PF03466 LysR substrate binding domain AHML_01770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_01775 PF02416 mttA/Hcf106 family AHML_01785 PF01464 Transglycosylase SLT domain AHML_01790 PF13091 PLD-like domain AHML_01800 PF00440 Bacterial regulatory proteins, tetR family AHML_01830 PF02881 SRP54-type protein, helical bundle domain AHML_01830 PF00448 SRP54-type protein, GTPase domain AHML_01835 PF00005 ABC transporter AHML_01840 PF18075 FtsX extracellular domain AHML_01845 PF00140 Sigma-70 factor, region 1.2 AHML_01845 PF04542 Sigma-70 region 2 AHML_01845 PF04545 Sigma-70, region 4 AHML_01850 PF00484 Carbonic anhydrase AHML_01855 PF00392 Bacterial regulatory proteins, gntR family AHML_01855 PF07702 UTRA domain AHML_01860 PF01979 Amidohydrolase family AHML_01865 PF00491 Arginase family AHML_01870 PF17391 Urocanase N-terminal domain AHML_01870 PF17392 Urocanase C-terminal domain AHML_01870 PF01175 Urocanase Rossmann-like domain AHML_01875 PF00221 Aromatic amino acid lyase AHML_01880 PF01699 Sodium/calcium exchanger protein AHML_01885 PF00563 EAL domain AHML_01885 PF12792 CSS motif domain associated with EAL AHML_01890 PF17157 Gammaproteobacterial periplasmic sensor domain AHML_01890 PF00990 Diguanylate cyclase, GGDEF domain AHML_01890 PF00563 EAL domain AHML_01920 PF03958 Bacterial type II/III secretion system short domain AHML_01920 PF00263 Bacterial type II and III secretion system protein AHML_01925 PF09077 Mu B transposition protein, C terminal AHML_01925 PF13401 AAA domain AHML_01935 PF00437 Type II/IV secretion system protein AHML_01940 PF00482 Type II secretion system (T2SS), protein F AHML_01955 PF07963 Prokaryotic N-terminal methylation motif AHML_01955 PF00114 Pilin (bacterial filament) AHML_01960 PF14245 Type IV pilin PilA AHML_01960 PF07963 Prokaryotic N-terminal methylation motif AHML_01990 PF04085 rod shape-determining protein MreC AHML_01995 PF04093 rod shape-determining protein MreD AHML_02000 PF02545 Maf-like protein AHML_02005 PF10150 Ribonuclease E/G family AHML_02005 PF00575 S1 RNA binding domain AHML_02010 PF13116 Protein of unknown function AHML_02010 PF13502 AsmA-like C-terminal region AHML_02020 PF00795 Carbon-nitrogen hydrolase AHML_02025 PF01523 Putative modulator of DNA gyrase AHML_02030 PF01380 SIS domain AHML_02030 PF01418 Helix-turn-helix domain, rpiR family AHML_02045 PF02378 Phosphotransferase system, EIIC AHML_02045 PF00367 phosphotransferase system, EIIB AHML_02050 PF13580 SIS domain AHML_02060 PF01914 MarC family integral membrane protein AHML_02065 PF07690 Major Facilitator Superfamily AHML_02075 PF00072 Response regulator receiver domain AHML_02080 PF00512 His Kinase A (phospho-acceptor) domain AHML_02080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHML_02080 PF00072 Response regulator receiver domain AHML_02080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_02080 PF01627 Hpt domain AHML_02080 PF00672 HAMP domain AHML_02085 PF13581 Histidine kinase-like ATPase domain AHML_02090 PF01740 STAS domain AHML_02090 PF08678 Rsbr N terminal AHML_02095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_02095 PF08447 PAS fold AHML_02095 PF13426 PAS domain AHML_02110 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AHML_02115 PF04228 Putative neutral zinc metallopeptidase AHML_02125 PF08668 HDOD domain AHML_02150 PF00419 Fimbrial protein AHML_02170 PF02753 Pili assembly chaperone PapD, C-terminal domain AHML_02170 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AHML_02175 PF00577 Outer membrane usher protein AHML_02175 PF13954 PapC N-terminal domain AHML_02175 PF13953 PapC C-terminal domain AHML_02180 PF01389 OmpA-like transmembrane domain AHML_02180 PF00691 OmpA family AHML_02185 PF00419 Fimbrial protein AHML_02190 PF04320 Protein with unknown function (DUF469) AHML_02225 PF00999 Sodium/hydrogen exchanger family AHML_02230 PF02965 Vitamin B12 dependent methionine synthase, activation domain AHML_02230 PF02310 B12 binding domain AHML_02230 PF00809 Pterin binding enzyme AHML_02230 PF02574 Homocysteine S-methyltransferase AHML_02230 PF02607 B12 binding domain AHML_02235 PF08443 RimK-like ATP-grasp domain AHML_02235 PF18030 RimK PreATP-grasp domain AHML_02240 PF05525 Branched-chain amino acid transport protein AHML_02250 PF00486 Transcriptional regulatory protein, C terminal AHML_02250 PF00072 Response regulator receiver domain AHML_02265 PF01117 Aerolysin toxin AHML_02265 PF03440 Aerolysin/Pertussis toxin (APT) domain AHML_02270 PF13667 ThiC-associated domain AHML_02270 PF01964 Radical SAM ThiC family AHML_02275 PF02581 Thiamine monophosphate synthase AHML_02280 PF00899 ThiF family AHML_02290 PF05690 Thiazole biosynthesis protein ThiG AHML_02295 PF04055 Radical SAM superfamily AHML_02295 PF06968 Biotin and Thiamin Synthesis associated domain AHML_02305 PF13036 Peptidoglycan-synthase activator LpoB AHML_02320 PF00990 Diguanylate cyclase, GGDEF domain AHML_02320 PF17151 Periplasmic sensor domain AHML_02330 PF06055 Exopolysaccharide synthesis, ExoD AHML_02345 PF08803 Putative mono-oxygenase ydhR AHML_02350 PF01638 HxlR-like helix-turn-helix AHML_02375 PF00593 TonB dependent receptor AHML_02375 PF07715 TonB-dependent Receptor Plug Domain AHML_02390 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AHML_02395 PF03692 Putative zinc- or iron-chelating domain AHML_02405 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AHML_02410 PF02602 Uroporphyrinogen-III synthase HemD AHML_02415 PF03900 Porphobilinogen deaminase, C-terminal domain AHML_02415 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AHML_02420 PF01295 Adenylate cyclase, class-I AHML_02420 PF12633 Adenylate cyclase NT domain AHML_02425 PF02230 Phospholipase/Carboxylesterase AHML_02430 PF01491 Frataxin-like domain AHML_02435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AHML_02435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AHML_02440 PF01678 Diaminopimelate epimerase AHML_02450 PF00589 Phage integrase family AHML_02450 PF02899 Phage integrase, N-terminal SAM-like domain AHML_02455 PF13419 Haloacid dehalogenase-like hydrolase AHML_02465 PF00027 Cyclic nucleotide-binding domain AHML_02465 PF13545 Crp-like helix-turn-helix domain AHML_02475 PF07722 Peptidase C26 AHML_02495 PF00005 ABC transporter AHML_02510 PF00994 Probable molybdopterin binding domain AHML_02510 PF02464 Competence-damaged protein AHML_02515 PF01966 HD domain AHML_02515 PF00013 KH domain AHML_02515 PF12072 Domain of unknown function (DUF3552) AHML_02520 PF04204 Homoserine O-succinyltransferase AHML_02530 PF01037 Lrp/AsnC ligand binding domain AHML_02535 PF00884 Sulfatase AHML_02550 PF02903 Alpha amylase, N-terminal ig-like domain AHML_02550 PF00128 Alpha amylase, catalytic domain AHML_02550 PF16657 Maltogenic Amylase, C-terminal domain AHML_02555 PF02308 MgtC family AHML_02575 PF00106 short chain dehydrogenase AHML_02580 PF03577 Peptidase family C69 AHML_02595 PF00465 Iron-containing alcohol dehydrogenase AHML_02605 PF01053 Cys/Met metabolism PLP-dependent enzyme AHML_02615 PF12793 Sugar transport-related sRNA regulator N-term AHML_02615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_02630 PF03280 Proteobacterial lipase chaperone protein AHML_02635 PF00561 alpha/beta hydrolase fold AHML_02645 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AHML_02645 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AHML_02650 PF02698 DUF218 domain AHML_02655 PF01752 Collagenase AHML_02655 PF08453 Peptidase family M9 N-terminal AHML_02665 PF00419 Fimbrial protein AHML_02675 PF13953 PapC C-terminal domain AHML_02675 PF00577 Outer membrane usher protein AHML_02675 PF13954 PapC N-terminal domain AHML_02680 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AHML_02680 PF02753 Pili assembly chaperone PapD, C-terminal domain AHML_02685 PF00419 Fimbrial protein AHML_02690 PF00419 Fimbrial protein AHML_02700 PF00501 AMP-binding enzyme AHML_02705 PF13378 Enolase C-terminal domain-like AHML_02710 PF00378 Enoyl-CoA hydratase/isomerase AHML_02715 PF12697 Alpha/beta hydrolase family AHML_02720 PF16582 Middle domain of thiamine pyrophosphate AHML_02720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHML_02720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHML_02725 PF00425 chorismate binding enzyme AHML_02730 PF01040 UbiA prenyltransferase family AHML_02755 PF03880 DbpA RNA binding domain AHML_02755 PF00271 Helicase conserved C-terminal domain AHML_02755 PF00270 DEAD/DEAH box helicase AHML_02760 PF01773 Na+ dependent nucleoside transporter N-terminus AHML_02760 PF07670 Nucleoside recognition AHML_02760 PF07662 Na+ dependent nucleoside transporter C-terminus AHML_02765 PF04307 LexA-binding, inner membrane-associated putative hydrolase AHML_02780 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AHML_02785 PF01544 CorA-like Mg2+ transporter protein AHML_02805 PF00999 Sodium/hydrogen exchanger family AHML_02805 PF02080 TrkA-C domain AHML_02805 PF03471 Transporter associated domain AHML_02810 PF05068 Mannitol repressor AHML_02815 PF08125 Mannitol dehydrogenase C-terminal domain AHML_02815 PF01232 Mannitol dehydrogenase Rossmann domain AHML_02820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AHML_02820 PF02378 Phosphotransferase system, EIIC AHML_02820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHML_02830 PF00440 Bacterial regulatory proteins, tetR family AHML_02835 PF08206 Ribonuclease B OB domain AHML_02835 PF17876 Cold shock domain AHML_02835 PF00773 RNB domain AHML_02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_02840 PF03466 LysR substrate binding domain AHML_02845 PF00765 Autoinducer synthase AHML_02850 PF00196 Bacterial regulatory proteins, luxR family AHML_02850 PF03472 Autoinducer binding domain AHML_02855 PF01810 LysE type translocator AHML_02860 PF02872 5'-nucleotidase, C-terminal domain AHML_02860 PF00149 Calcineurin-like phosphoesterase AHML_02865 PF05433 Glycine zipper 2TM domain AHML_02870 PF00583 Acetyltransferase (GNAT) family AHML_02875 PF11756 Nitrous oxide-stimulated promoter AHML_02880 PF01321 Creatinase/Prolidase N-terminal domain AHML_02880 PF00557 Metallopeptidase family M24 AHML_02885 PF00392 Bacterial regulatory proteins, gntR family AHML_02895 PF01430 Hsp33 protein AHML_02900 PF01479 S4 domain AHML_02905 PF11356 Type II secretion system protein C AHML_02910 PF03958 Bacterial type II/III secretion system short domain AHML_02910 PF00263 Bacterial type II and III secretion system protein AHML_02915 PF00437 Type II/IV secretion system protein AHML_02920 PF00482 Type II secretion system (T2SS), protein F AHML_02925 PF08334 Type II secretion system (T2SS), protein G AHML_02925 PF07963 Prokaryotic N-terminal methylation motif AHML_02935 PF12019 Type II transport protein GspH AHML_02935 PF07963 Prokaryotic N-terminal methylation motif AHML_02940 PF07963 Prokaryotic N-terminal methylation motif AHML_02940 PF02501 Type II secretion system (T2SS), protein I AHML_02945 PF07963 Prokaryotic N-terminal methylation motif AHML_02945 PF11612 Type II secretion system (T2SS), protein J AHML_02950 PF03934 Type II secretion system (T2SS), protein K AHML_02955 PF12693 GspL periplasmic domain AHML_02955 PF05134 Type II secretion system (T2SS), protein L AHML_02960 PF04612 Type II secretion system (T2SS), protein M AHML_02965 PF01203 Type II secretion system (T2SS), protein N AHML_02970 PF00196 Bacterial regulatory proteins, luxR family AHML_02975 PF00579 tRNA synthetases class I (W and Y) AHML_02975 PF01479 S4 domain AHML_02980 PF13419 Haloacid dehalogenase-like hydrolase AHML_02985 PF00293 NUDIX domain AHML_02990 PF00459 Inositol monophosphatase family AHML_02995 PF03222 Tryptophan/tyrosine permease family AHML_03000 PF01588 Putative tRNA binding domain AHML_03005 PF06445 GyrI-like small molecule binding domain AHML_03005 PF12833 Helix-turn-helix domain AHML_03010 PF01340 Met Apo-repressor, MetJ AHML_03015 PF01053 Cys/Met metabolism PLP-dependent enzyme AHML_03020 PF03447 Homoserine dehydrogenase, NAD binding domain AHML_03020 PF00742 Homoserine dehydrogenase AHML_03020 PF00696 Amino acid kinase family AHML_03030 PF00311 Phosphoenolpyruvate carboxylase AHML_03035 PF01546 Peptidase family M20/M25/M40 AHML_03035 PF07687 Peptidase dimerisation domain AHML_03040 PF01118 Semialdehyde dehydrogenase, NAD binding domain AHML_03040 PF02774 Semialdehyde dehydrogenase, dimerisation domain AHML_03045 PF00696 Amino acid kinase family AHML_03050 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AHML_03050 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AHML_03055 PF00764 Arginosuccinate synthase AHML_03060 PF14698 Argininosuccinate lyase C-terminal AHML_03060 PF00206 Lyase AHML_03085 PF12464 Maltose acetyltransferase AHML_03085 PF14602 Hexapeptide repeat of succinyl-transferase AHML_03090 PF13194 Domain of unknown function (DUF4010) AHML_03105 PF00528 Binding-protein-dependent transport system inner membrane component AHML_03110 PF00528 Binding-protein-dependent transport system inner membrane component AHML_03115 PF00005 ABC transporter AHML_03115 PF12857 TOBE-like domain AHML_03120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_03120 PF03466 LysR substrate binding domain AHML_03125 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AHML_03125 PF18416 N-acetylglucosamine binding protein domain 2 AHML_03130 PF12729 Four helix bundle sensory module for signal transduction AHML_03130 PF00672 HAMP domain AHML_03130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_03160 PF14685 Tricorn protease PDZ domain AHML_03160 PF07676 WD40-like Beta Propeller Repeat AHML_03160 PF14684 Tricorn protease C1 domain AHML_03160 PF03572 Peptidase family S41 AHML_03180 PF11230 Protein of unknown function (DUF3029) AHML_03185 PF04055 Radical SAM superfamily AHML_03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_03195 PF03466 LysR substrate binding domain AHML_03205 PF00155 Aminotransferase class I and II AHML_03210 PF02583 Metal-sensitive transcriptional repressor AHML_03225 PF11852 Domain of unknown function (DUF3372) AHML_03225 PF03714 Bacterial pullanase-associated domain AHML_03225 PF17967 Pullulanase N2 domain AHML_03225 PF18494 Pullulanase Ins domain AHML_03225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AHML_03230 PF00403 Heavy-metal-associated domain AHML_03240 PF08534 Redoxin AHML_03250 PF00271 Helicase conserved C-terminal domain AHML_03250 PF00270 DEAD/DEAH box helicase AHML_03265 PF03372 Endonuclease/Exonuclease/phosphatase family AHML_03270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_03270 PF08447 PAS fold AHML_03285 PF06062 Uncharacterised protein family (UPF0231) AHML_03290 PF17853 GGDEF-like domain AHML_03290 PF13556 PucR C-terminal helix-turn-helix domain AHML_03290 PF05651 Putative sugar diacid recognition AHML_03295 PF02447 GntP family permease AHML_03300 PF02595 Glycerate kinase family AHML_03310 PF00255 Glutathione peroxidase AHML_03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_03315 PF03466 LysR substrate binding domain AHML_03320 PF07670 Nucleoside recognition AHML_03320 PF07662 Na+ dependent nucleoside transporter C-terminus AHML_03320 PF01773 Na+ dependent nucleoside transporter N-terminus AHML_03325 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AHML_03325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AHML_03330 PF00472 RF-1 domain AHML_03335 PF00543 Nitrogen regulatory protein P-II AHML_03340 PF13416 Bacterial extracellular solute-binding protein AHML_03350 PF00005 ABC transporter AHML_03350 PF08402 TOBE domain AHML_03355 PF04261 Dyp-type peroxidase family AHML_03360 PF01316 Arginine repressor, DNA binding domain AHML_03360 PF02863 Arginine repressor, C-terminal domain AHML_03365 PF00005 ABC transporter AHML_03370 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_03375 PF00528 Binding-protein-dependent transport system inner membrane component AHML_03380 PF00528 Binding-protein-dependent transport system inner membrane component AHML_03385 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AHML_03385 PF00056 lactate/malate dehydrogenase, NAD binding domain AHML_03390 PF08238 Sel1 repeat AHML_03395 PF00175 Oxidoreductase NAD-binding domain AHML_03395 PF00970 Oxidoreductase FAD-binding domain AHML_03395 PF00042 Globin AHML_03400 PF02082 Transcriptional regulator AHML_03405 PF01595 Cyclin M transmembrane N-terminal domain AHML_03405 PF03471 Transporter associated domain AHML_03405 PF00571 CBS domain AHML_03410 PF01578 Cytochrome C assembly protein AHML_03415 PF02978 Signal peptide binding domain AHML_03415 PF00448 SRP54-type protein, GTPase domain AHML_03415 PF02881 SRP54-type protein, helical bundle domain AHML_03420 PF00886 Ribosomal protein S16 AHML_03425 PF05239 PRC-barrel domain AHML_03425 PF01782 RimM N-terminal domain AHML_03430 PF01746 tRNA (Guanine-1)-methyltransferase AHML_03435 PF01245 Ribosomal protein L19 AHML_03445 PF02976 DNA mismatch repair enzyme MutH AHML_03450 PF00293 NUDIX domain AHML_03455 PF02896 PEP-utilising enzyme, TIM barrel domain AHML_03455 PF05524 PEP-utilising enzyme, N-terminal AHML_03455 PF00391 PEP-utilising enzyme, mobile domain AHML_03455 PF01590 GAF domain AHML_03460 PF01790 Prolipoprotein diacylglyceryl transferase AHML_03465 PF00303 Thymidylate synthase AHML_03470 PF06965 Na+/H+ antiporter 1 AHML_03480 PF03466 LysR substrate binding domain AHML_03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_03485 PF01022 Bacterial regulatory protein, arsR family AHML_03490 PF01649 Ribosomal protein S20 AHML_03495 PF03023 Lipid II flippase MurJ AHML_03500 PF06574 FAD synthetase AHML_03500 PF01687 Riboflavin kinase AHML_03505 PF08264 Anticodon-binding domain of tRNA AHML_03505 PF00133 tRNA synthetases class I (I, L, M and V) AHML_03505 PF06827 Zinc finger found in FPG and IleRS AHML_03510 PF01252 Signal peptidase (SPase) II AHML_03515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHML_03520 PF02401 LytB protein AHML_03545 PF05567 Neisseria PilC beta-propeller domain AHML_03580 PF00795 Carbon-nitrogen hydrolase AHML_03580 PF02540 NAD synthase AHML_03585 PF00543 Nitrogen regulatory protein P-II AHML_03595 PF02664 S-Ribosylhomocysteinase (LuxS) AHML_03600 PF00990 Diguanylate cyclase, GGDEF domain AHML_03605 PF00575 S1 RNA binding domain AHML_03605 PF00773 RNB domain AHML_03605 PF08461 Ribonuclease R winged-helix domain AHML_03605 PF08206 Ribonuclease B OB domain AHML_03605 PF17876 Cold shock domain AHML_03610 PF00588 SpoU rRNA Methylase family AHML_03610 PF08032 RNA 2'-O ribose methyltransferase substrate binding AHML_03620 PF13673 Acetyltransferase (GNAT) domain AHML_03640 PF01566 Natural resistance-associated macrophage protein AHML_03645 PF01250 Ribosomal protein S6 AHML_03650 PF01084 Ribosomal protein S18 AHML_03655 PF01281 Ribosomal protein L9, N-terminal domain AHML_03655 PF03948 Ribosomal protein L9, C-terminal domain AHML_03660 PF00175 Oxidoreductase NAD-binding domain AHML_03660 PF00970 Oxidoreductase FAD-binding domain AHML_03680 PF08659 KR domain AHML_03680 PF16197 Ketoacyl-synthetase C-terminal extension AHML_03680 PF02801 Beta-ketoacyl synthase, C-terminal domain AHML_03680 PF08240 Alcohol dehydrogenase GroES-like domain AHML_03680 PF00109 Beta-ketoacyl synthase, N-terminal domain AHML_03680 PF08990 Erythronolide synthase docking AHML_03680 PF00550 Phosphopantetheine attachment site AHML_03680 PF00698 Acyl transferase domain AHML_03680 PF14765 Polyketide synthase dehydratase AHML_03685 PF09335 SNARE associated Golgi protein AHML_03690 PF00675 Insulinase (Peptidase family M16) AHML_03690 PF05193 Peptidase M16 inactive domain AHML_03695 PF04262 Glutamate-cysteine ligase AHML_03705 PF00501 AMP-binding enzyme AHML_03715 PF00583 Acetyltransferase (GNAT) family AHML_03725 PF12592 Protein of unknown function (DUF3763) AHML_03725 PF17868 AAA lid domain AHML_03725 PF07728 AAA domain (dynein-related subfamily) AHML_03730 PF05762 VWA domain containing CoxE-like protein AHML_03735 PF13426 PAS domain AHML_03735 PF00990 Diguanylate cyclase, GGDEF domain AHML_03735 PF00563 EAL domain AHML_03740 PF00990 Diguanylate cyclase, GGDEF domain AHML_03740 PF00072 Response regulator receiver domain AHML_03745 PF16658 Class II release factor RF3, C-terminal domain AHML_03745 PF03144 Elongation factor Tu domain 2 AHML_03745 PF00009 Elongation factor Tu GTP binding domain AHML_03765 PF00583 Acetyltransferase (GNAT) family AHML_03770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AHML_03780 PF03466 LysR substrate binding domain AHML_03780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_03785 PF04371 Porphyromonas-type peptidyl-arginine deiminase AHML_03790 PF01425 Amidase AHML_03800 PF00753 Metallo-beta-lactamase superfamily AHML_03810 PF00271 Helicase conserved C-terminal domain AHML_03810 PF00270 DEAD/DEAH box helicase AHML_03815 PF03466 LysR substrate binding domain AHML_03815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_03830 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase AHML_03835 PF03150 Di-haem cytochrome c peroxidase AHML_03835 PF00034 Cytochrome c AHML_03850 PF00445 Ribonuclease T2 family AHML_03860 PF03060 Nitronate monooxygenase AHML_03865 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AHML_03865 PF00293 NUDIX domain AHML_03865 PF09297 NADH pyrophosphatase zinc ribbon domain AHML_03870 PF00672 HAMP domain AHML_03870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_03870 PF00512 His Kinase A (phospho-acceptor) domain AHML_03870 PF16527 Two-component sensor protein CpxA, periplasmic domain AHML_03875 PF00072 Response regulator receiver domain AHML_03875 PF00486 Transcriptional regulatory protein, C terminal AHML_03880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_03885 PF02687 FtsX-like permease family AHML_03885 PF12704 MacB-like periplasmic core domain AHML_03885 PF00005 ABC transporter AHML_03890 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_03895 PF00005 ABC transporter AHML_03900 PF00528 Binding-protein-dependent transport system inner membrane component AHML_03905 PF00528 Binding-protein-dependent transport system inner membrane component AHML_03910 PF00291 Pyridoxal-phosphate dependent enzyme AHML_03915 PF00326 Prolyl oligopeptidase family AHML_03915 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AHML_03935 PF08335 GlnD PII-uridylyltransferase AHML_03935 PF03710 Glutamate-ammonia ligase adenylyltransferase AHML_03945 PF02743 Cache domain AHML_03945 PF00672 HAMP domain AHML_03945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_03950 PF00027 Cyclic nucleotide-binding domain AHML_03950 PF00520 Ion transport protein AHML_03955 PF08239 Bacterial SH3 domain AHML_03960 PF00171 Aldehyde dehydrogenase family AHML_03960 PF01619 Proline dehydrogenase AHML_03960 PF14850 DNA-binding domain of Proline dehydrogenase AHML_03960 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AHML_03965 PF09297 NADH pyrophosphatase zinc ribbon domain AHML_03965 PF00293 NUDIX domain AHML_03970 PF01208 Uroporphyrinogen decarboxylase (URO-D) AHML_03975 PF00480 ROK family AHML_03980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AHML_03980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHML_03985 PF00162 Phosphoglycerate kinase AHML_03990 PF01116 Fructose-bisphosphate aldolase class-II AHML_03995 PF01266 FAD dependent oxidoreductase AHML_04005 PF02683 Cytochrome C biogenesis protein transmembrane region AHML_04005 PF11412 Disulphide bond corrector protein DsbC AHML_04010 PF03091 CutA1 divalent ion tolerance protein AHML_04025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_04025 PF03466 LysR substrate binding domain AHML_04030 PF01571 Aminomethyltransferase folate-binding domain AHML_04035 PF03937 Flavinator of succinate dehydrogenase AHML_04045 PF00890 FAD binding domain AHML_04045 PF02910 Fumarate reductase flavoprotein C-term AHML_04050 PF08281 Sigma-70, region 4 AHML_04050 PF04542 Sigma-70 region 2 AHML_04055 PF03872 Anti sigma-E protein RseA, N-terminal domain AHML_04055 PF03873 Anti sigma-E protein RseA, C-terminal domain AHML_04060 PF17188 MucB/RseB C-terminal domain AHML_04060 PF03888 MucB/RseB N-terminal domain AHML_04070 PF00679 Elongation factor G C-terminus AHML_04070 PF06421 GTP-binding protein LepA C-terminus AHML_04070 PF00009 Elongation factor Tu GTP binding domain AHML_04070 PF03144 Elongation factor Tu domain 2 AHML_04075 PF10502 Signal peptidase, peptidase S26 AHML_04080 PF14622 Ribonuclease-III-like AHML_04080 PF00035 Double-stranded RNA binding motif AHML_04085 PF07650 KH domain AHML_04085 PF01926 50S ribosome-binding GTPase AHML_04090 PF11967 Recombination protein O N terminal AHML_04090 PF02565 Recombination protein O C terminal AHML_04095 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AHML_04105 PF01116 Fructose-bisphosphate aldolase class-II AHML_04110 PF01979 Amidohydrolase family AHML_04115 PF03610 PTS system fructose IIA component AHML_04120 PF03613 PTS system mannose/fructose/sorbose family IID component AHML_04125 PF03609 PTS system sorbose-specific iic component AHML_04130 PF03830 PTS system sorbose subfamily IIB component AHML_04135 PF01380 SIS domain AHML_04140 PF08013 Tagatose 6 phosphate kinase AHML_04145 PF08220 DeoR-like helix-turn-helix domain AHML_04145 PF00455 DeoR C terminal sensor domain AHML_04150 PF01510 N-acetylmuramoyl-L-alanine amidase AHML_04155 PF07308 Protein of unknown function (DUF1456) AHML_04160 PF00672 HAMP domain AHML_04160 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHML_04160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_04160 PF00512 His Kinase A (phospho-acceptor) domain AHML_04160 PF01627 Hpt domain AHML_04160 PF00072 Response regulator receiver domain AHML_04165 PF05958 tRNA (Uracil-5-)-methyltransferase AHML_04165 PF01938 TRAM domain AHML_04170 PF02824 TGS domain AHML_04170 PF04607 Region found in RelA / SpoT proteins AHML_04170 PF13291 ACT domain AHML_04175 PF03819 MazG nucleotide pyrophosphohydrolase domain AHML_04180 PF06418 CTP synthase N-terminus AHML_04180 PF00117 Glutamine amidotransferase class-I AHML_04185 PF03952 Enolase, N-terminal domain AHML_04185 PF00113 Enolase, C-terminal TIM barrel domain AHML_04190 PF04977 Septum formation initiator AHML_04195 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AHML_04200 PF02542 YgbB family AHML_04205 PF01142 tRNA pseudouridine synthase D (TruD) AHML_04210 PF01975 Survival protein SurE AHML_04220 PF09335 SNARE associated Golgi protein AHML_04225 PF01476 LysM domain AHML_04225 PF01551 Peptidase family M23 AHML_04230 PF04545 Sigma-70, region 4 AHML_04230 PF04542 Sigma-70 region 2 AHML_04230 PF00140 Sigma-70 factor, region 1.2 AHML_04230 PF04539 Sigma-70 region 3 AHML_04235 PF00814 Glycoprotease family AHML_04240 PF01165 Ribosomal protein S21 AHML_04245 PF09424 Yqey-like protein AHML_04250 PF08275 DNA primase catalytic core, N-terminal domain AHML_04250 PF01807 CHC2 zinc finger AHML_04250 PF10410 DnaB-helicase binding domain of primase AHML_04250 PF08278 DNA primase DnaG DnaB-binding AHML_04255 PF03979 Sigma-70 factor, region 1.1 AHML_04255 PF04546 Sigma-70, non-essential region AHML_04255 PF04539 Sigma-70 region 3 AHML_04255 PF04542 Sigma-70 region 2 AHML_04255 PF00140 Sigma-70 factor, region 1.2 AHML_04255 PF04545 Sigma-70, region 4 AHML_04265 PF00128 Alpha amylase, catalytic domain AHML_04280 PF02843 Phosphoribosylglycinamide synthetase, C domain AHML_04280 PF02844 Phosphoribosylglycinamide synthetase, N domain AHML_04280 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AHML_04285 PF02142 MGS-like domain AHML_04285 PF01808 AICARFT/IMPCHase bienzyme AHML_04290 PF13411 MerR HTH family regulatory protein AHML_04295 PF01872 RibD C-terminal domain AHML_04300 PF03889 Alternative ribosome-rescue factor A AHML_04305 PF04055 Radical SAM superfamily AHML_04305 PF06969 HemN C-terminal domain AHML_04310 PF01725 Ham1 family AHML_04315 PF07690 Major Facilitator Superfamily AHML_04320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AHML_04320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AHML_04330 PF13302 Acetyltransferase (GNAT) domain AHML_04340 PF03413 Peptidase propeptide and YPEB domain AHML_04340 PF01447 Thermolysin metallopeptidase, catalytic domain AHML_04340 PF02868 Thermolysin metallopeptidase, alpha-helical domain AHML_04340 PF04151 Bacterial pre-peptidase C-terminal domain AHML_04340 PF07504 Fungalysin/Thermolysin Propeptide Motif AHML_04345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_04345 PF03466 LysR substrate binding domain AHML_04350 PF07690 Major Facilitator Superfamily AHML_04355 PF00267 Gram-negative porin AHML_04360 PF03605 Anaerobic c4-dicarboxylate membrane transporter AHML_04365 PF00206 Lyase AHML_04365 PF10415 Fumarase C C-terminus AHML_04370 PF04186 FxsA cytoplasmic membrane protein AHML_04375 PF01554 MatE AHML_04380 PF00166 Chaperonin 10 Kd subunit AHML_04385 PF00118 TCP-1/cpn60 chaperonin family AHML_04395 PF00563 EAL domain AHML_04395 PF00990 Diguanylate cyclase, GGDEF domain AHML_04395 PF03707 Bacterial signalling protein N terminal repeat AHML_04395 PF13188 PAS domain AHML_04405 PF00849 RNA pseudouridylate synthase AHML_04410 PF12137 RNA polymerase recycling family C-terminal AHML_04410 PF00271 Helicase conserved C-terminal domain AHML_04410 PF00176 SNF2 family N-terminal domain AHML_04410 PF18339 RapA N-terminal Tudor like domain 1 AHML_04410 PF18337 RapA N-terminal Tudor like domain AHML_04420 PF02867 Ribonucleotide reductase, barrel domain AHML_04420 PF00317 Ribonucleotide reductase, all-alpha domain AHML_04420 PF08343 Ribonucleotide reductase N-terminal AHML_04430 PF13638 PIN domain AHML_04430 PF02562 PhoH-like protein AHML_04435 PF00005 ABC transporter AHML_04440 PF00528 Binding-protein-dependent transport system inner membrane component AHML_04460 PF00694 Aconitase C-terminal domain AHML_04465 PF00330 Aconitase family (aconitate hydratase) AHML_04470 PF00180 Isocitrate/isopropylmalate dehydrogenase AHML_04475 PF08502 LeuA allosteric (dimerisation) domain AHML_04475 PF00682 HMGL-like AHML_04485 PF01569 PAP2 superfamily AHML_04500 PF00205 Thiamine pyrophosphate enzyme, central domain AHML_04500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHML_04500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHML_04505 PF10369 Small subunit of acetolactate synthase AHML_04510 PF07085 DRTGG domain AHML_04510 PF01515 Phosphate acetyl/butaryl transferase AHML_04515 PF00871 Acetokinase family AHML_04520 PF04217 Protein of unknown function, DUF412 AHML_04525 PF03887 YfbU domain AHML_04530 PF00578 AhpC/TSA family AHML_04535 PF01842 ACT domain AHML_04540 PF00701 Dihydrodipicolinate synthetase family AHML_04545 PF06804 NlpB/DapX lipoprotein AHML_04550 PF01259 SAICAR synthetase AHML_04560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_04560 PF03466 LysR substrate binding domain AHML_04565 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AHML_04585 PF00512 His Kinase A (phospho-acceptor) domain AHML_04585 PF00072 Response regulator receiver domain AHML_04585 PF01627 Hpt domain AHML_04585 PF18415 Histidine kinase receptor ArcB trans-membrane domain AHML_04585 PF00989 PAS fold AHML_04585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_04590 PF13286 Phosphohydrolase-associated domain AHML_04590 PF01966 HD domain AHML_04600 PF00512 His Kinase A (phospho-acceptor) domain AHML_04600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_04600 PF09456 RcsC Alpha-Beta-Loop (ABL) AHML_04600 PF00072 Response regulator receiver domain AHML_04605 PF03707 Bacterial signalling protein N terminal repeat AHML_04605 PF00563 EAL domain AHML_04605 PF00990 Diguanylate cyclase, GGDEF domain AHML_04610 PF12729 Four helix bundle sensory module for signal transduction AHML_04610 PF00672 HAMP domain AHML_04610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_04615 PF02357 Transcription termination factor nusG AHML_04620 PF03180 NLPA lipoprotein AHML_04625 PF00528 Binding-protein-dependent transport system inner membrane component AHML_04630 PF09383 NIL domain AHML_04630 PF00005 ABC transporter AHML_04640 PF00480 ROK family AHML_04645 PF08331 Domain of unknown function (DUF1730) AHML_04650 PF03853 YjeF-related protein N-terminus AHML_04650 PF01256 Carbohydrate kinase AHML_04655 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AHML_04660 PF01520 N-acetylmuramoyl-L-alanine amidase AHML_04665 PF08676 MutL C terminal dimerisation domain AHML_04665 PF01119 DNA mismatch repair protein, C-terminal domain AHML_04675 PF17209 Hfq protein AHML_04680 PF16360 GTP-binding GTPase Middle Region AHML_04680 PF13167 GTP-binding GTPase N-terminal AHML_04680 PF01926 50S ribosome-binding GTPase AHML_04685 PF12221 Bacterial membrane protein N terminal AHML_04685 PF01145 SPFH domain / Band 7 family AHML_04690 PF01145 SPFH domain / Band 7 family AHML_04695 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AHML_04700 PF00348 Polyprenyl synthetase AHML_04705 PF00829 Ribosomal prokaryotic L21 protein AHML_04710 PF01016 Ribosomal L27 protein AHML_04715 PF01018 GTP1/OBG AHML_04715 PF01926 50S ribosome-binding GTPase AHML_04725 PF00501 AMP-binding enzyme AHML_04725 PF13193 AMP-binding enzyme C-terminal domain AHML_04745 PF00296 Luciferase-like monooxygenase AHML_04755 PF00149 Calcineurin-like phosphoesterase AHML_04760 PF04379 ApaG domain AHML_04765 PF00398 Ribosomal RNA adenine dimethylase AHML_04770 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AHML_04775 PF00639 PPIC-type PPIASE domain AHML_04775 PF09312 SurA N-terminal domain AHML_04780 PF04453 LPS transport system D AHML_04780 PF03968 OstA-like protein AHML_04785 PF01636 Phosphotransferase enzyme family AHML_04790 PF00483 Nucleotidyl transferase AHML_04795 PF00226 DnaJ domain AHML_04795 PF05099 Tellurite resistance protein TerB AHML_04800 PF00860 Permease family AHML_04810 PF12848 ABC transporter AHML_04810 PF00005 ABC transporter AHML_04815 PF00589 Phage integrase family AHML_04815 PF12167 Arm DNA-binding domain AHML_04825 PF00436 Single-strand binding protein family AHML_04860 PF00717 Peptidase S24-like AHML_04860 PF01381 Helix-turn-helix AHML_04945 PF01555 DNA methylase AHML_04950 PF00004 ATPase family associated with various cellular activities (AAA) AHML_05000 PF03354 Phage Terminase AHML_05015 PF01343 Peptidase family S49 AHML_05105 PF01048 Phosphorylase superfamily AHML_05110 PF01464 Transglycosylase SLT domain AHML_05125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_05125 PF03466 LysR substrate binding domain AHML_05130 PF01048 Phosphorylase superfamily AHML_05135 PF07670 Nucleoside recognition AHML_05135 PF07662 Na+ dependent nucleoside transporter C-terminus AHML_05135 PF01773 Na+ dependent nucleoside transporter N-terminus AHML_05140 PF01791 DeoC/LacD family aldolase AHML_05150 PF01370 NAD dependent epimerase/dehydratase family AHML_05160 PF00005 ABC transporter AHML_05165 PF01032 FecCD transport family AHML_05175 PF06228 Haem utilisation ChuX/HutX AHML_05180 PF01243 Pyridoxamine 5'-phosphate oxidase AHML_05200 PF00593 TonB dependent receptor AHML_05200 PF07715 TonB-dependent Receptor Plug Domain AHML_05205 PF12832 MFS_1 like family AHML_05210 PF13443 Cro/C1-type HTH DNA-binding domain AHML_05220 PF00989 PAS fold AHML_05220 PF00512 His Kinase A (phospho-acceptor) domain AHML_05220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_05225 PF00704 Glycosyl hydrolases family 18 AHML_05225 PF08329 Chitinase A, N-terminal domain AHML_05230 PF17945 Beta/Gamma crystallin AHML_05230 PF12561 ToxR activated gene A lipoprotein domain AHML_05235 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AHML_05235 PF18416 N-acetylglucosamine binding protein domain 2 AHML_05240 PF13847 Methyltransferase domain AHML_05245 PF00027 Cyclic nucleotide-binding domain AHML_05245 PF13545 Crp-like helix-turn-helix domain AHML_05250 PF02566 OsmC-like protein AHML_05265 PF00485 Phosphoribulokinase / Uridine kinase family AHML_05270 PF00893 Small Multidrug Resistance protein AHML_05275 PF00892 EamA-like transporter family AHML_05280 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AHML_05285 PF01522 Polysaccharide deacetylase AHML_05290 PF02911 Formyl transferase, C-terminal domain AHML_05290 PF01370 NAD dependent epimerase/dehydratase family AHML_05290 PF00551 Formyl transferase AHML_05295 PF00535 Glycosyl transferase family 2 AHML_05300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AHML_05305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AHML_05305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AHML_05305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AHML_05310 PF06794 Uncharacterised protein family (UPF0270) AHML_05315 PF01590 GAF domain AHML_05315 PF00990 Diguanylate cyclase, GGDEF domain AHML_05315 PF00360 Phytochrome region AHML_05315 PF00563 EAL domain AHML_05320 PF00561 alpha/beta hydrolase fold AHML_05325 PF00072 Response regulator receiver domain AHML_05325 PF01584 CheW-like domain AHML_05335 PF09526 Probable metal-binding protein (DUF2387) AHML_05340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHML_05345 PF04102 SlyX AHML_05355 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AHML_05355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHML_05360 PF02954 Bacterial regulatory protein, Fis family AHML_05360 PF00072 Response regulator receiver domain AHML_05360 PF00158 Sigma-54 interaction domain AHML_05380 PF00149 Calcineurin-like phosphoesterase AHML_05380 PF02872 5'-nucleotidase, C-terminal domain AHML_05385 PF12792 CSS motif domain associated with EAL AHML_05385 PF00563 EAL domain AHML_05400 PF00772 DnaB-like helicase N terminal domain AHML_05400 PF03796 DnaB-like helicase C terminal domain AHML_05405 PF03796 DnaB-like helicase C terminal domain AHML_05405 PF00772 DnaB-like helicase N terminal domain AHML_05410 PF00842 Alanine racemase, C-terminal domain AHML_05410 PF01168 Alanine racemase, N-terminal domain AHML_05415 PF12838 4Fe-4S dicluster domain AHML_05425 PF00989 PAS fold AHML_05425 PF01590 GAF domain AHML_05425 PF00563 EAL domain AHML_05425 PF00990 Diguanylate cyclase, GGDEF domain AHML_05440 PF00266 Aminotransferase class-V AHML_05445 PF00072 Response regulator receiver domain AHML_05445 PF01339 CheB methylesterase AHML_05450 PF03975 CheD chemotactic sensory transduction AHML_05455 PF01739 CheR methyltransferase, SAM binding domain AHML_05455 PF03705 CheR methyltransferase, all-alpha domain AHML_05460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_05460 PF02203 Tar ligand binding domain homologue AHML_05460 PF00672 HAMP domain AHML_05465 PF01584 CheW-like domain AHML_05470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_05470 PF12729 Four helix bundle sensory module for signal transduction AHML_05470 PF00672 HAMP domain AHML_05475 PF01584 CheW-like domain AHML_05475 PF02895 Signal transducing histidine kinase, homodimeric domain AHML_05475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_05475 PF01627 Hpt domain AHML_05475 PF07194 P2 response regulator binding domain AHML_05485 PF00072 Response regulator receiver domain AHML_05490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_05490 PF00672 HAMP domain AHML_05490 PF02743 Cache domain AHML_05500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_05500 PF03466 LysR substrate binding domain AHML_05505 PF01810 LysE type translocator AHML_05510 PF01136 Peptidase family U32 AHML_05510 PF12392 Collagenase AHML_05520 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AHML_05520 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AHML_05525 PF06029 AlkA N-terminal domain AHML_05525 PF02805 Metal binding domain of Ada AHML_05525 PF00730 HhH-GPD superfamily base excision DNA repair protein AHML_05525 PF12833 Helix-turn-helix domain AHML_05535 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AHML_05560 PF00106 short chain dehydrogenase AHML_05565 PF03573 outer membrane porin, OprD family AHML_05570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_05570 PF02743 Cache domain AHML_05570 PF00672 HAMP domain AHML_05575 PF00892 EamA-like transporter family AHML_05580 PF07995 Glucose / Sorbosone dehydrogenase AHML_05585 PF01740 STAS domain AHML_05585 PF00916 Sulfate permease family AHML_05590 PF03976 Polyphosphate kinase 2 (PPK2) AHML_05610 PF00872 Transposase, Mutator family AHML_05615 PF13649 Methyltransferase domain AHML_05650 PF00158 Sigma-54 interaction domain AHML_05650 PF01590 GAF domain AHML_05655 PF00005 ABC transporter AHML_05655 PF12857 TOBE-like domain AHML_05675 PF07715 TonB-dependent Receptor Plug Domain AHML_05675 PF00593 TonB dependent receptor AHML_05690 PF13737 Transposase DDE domain AHML_05700 PF00717 Peptidase S24-like AHML_05710 PF00270 DEAD/DEAH box helicase AHML_05710 PF16124 RecQ zinc-binding AHML_05710 PF00271 Helicase conserved C-terminal domain AHML_05710 PF09382 RQC domain AHML_05710 PF00570 HRDC domain AHML_05730 PF00271 Helicase conserved C-terminal domain AHML_05730 PF16124 RecQ zinc-binding AHML_05730 PF00570 HRDC domain AHML_05730 PF09382 RQC domain AHML_05730 PF00270 DEAD/DEAH box helicase AHML_05750 PF01242 6-pyruvoyl tetrahydropterin synthase AHML_05765 PF06508 Queuosine biosynthesis protein QueC AHML_05770 PF04055 Radical SAM superfamily AHML_05780 PF04002 RadC-like JAB domain AHML_05825 PF09588 YqaJ-like viral recombinase domain AHML_05850 PF00800 Prephenate dehydratase AHML_05850 PF01817 Chorismate mutase type II AHML_05880 PF08349 Protein of unknown function (DUF1722) AHML_05885 PF13411 MerR HTH family regulatory protein AHML_05890 PF00875 DNA photolyase AHML_05890 PF03441 FAD binding domain of DNA photolyase AHML_05900 PF00106 short chain dehydrogenase AHML_05940 PF00210 Ferritin-like domain AHML_05945 PF03063 Prismane/CO dehydrogenase family AHML_05950 PF00175 Oxidoreductase NAD-binding domain AHML_05950 PF00042 Globin AHML_05950 PF00970 Oxidoreductase FAD-binding domain AHML_05955 PF16363 GDP-mannose 4,6 dehydratase AHML_05960 PF13462 Thioredoxin AHML_05960 PF06965 Na+/H+ antiporter 1 AHML_05965 PF00196 Bacterial regulatory proteins, luxR family AHML_05965 PF03472 Autoinducer binding domain AHML_05970 PF05638 Type VI secretion system effector, Hcp AHML_05975 PF04717 Type VI secretion system, phage-baseplate injector AHML_05995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_05995 PF03466 LysR substrate binding domain AHML_06000 PF03306 Alpha-acetolactate decarboxylase AHML_06005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHML_06005 PF00205 Thiamine pyrophosphate enzyme, central domain AHML_06005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHML_06010 PF01965 DJ-1/PfpI family AHML_06015 PF02558 Ketopantoate reductase PanE/ApbA AHML_06015 PF08546 Ketopantoate reductase PanE/ApbA C terminal AHML_06020 PF04461 Protein of unknown function (DUF520) AHML_06025 PF03502 Nucleoside-specific channel-forming protein, Tsx AHML_06030 PF07690 Major Facilitator Superfamily AHML_06040 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AHML_06050 PF05175 Methyltransferase small domain AHML_06055 PF01722 BolA-like protein AHML_06060 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AHML_06060 PF11973 NQRA C-terminal domain AHML_06065 PF03116 NQR2, RnfD, RnfE family AHML_06070 PF04205 FMN-binding domain AHML_06075 PF02508 Rnf-Nqr subunit, membrane protein AHML_06080 PF02508 Rnf-Nqr subunit, membrane protein AHML_06085 PF00970 Oxidoreductase FAD-binding domain AHML_06085 PF00111 2Fe-2S iron-sulfur cluster binding domain AHML_06085 PF00175 Oxidoreductase NAD-binding domain AHML_06090 PF02424 ApbE family AHML_06105 PF00817 impB/mucB/samB family AHML_06105 PF11798 IMS family HHH motif AHML_06105 PF11799 impB/mucB/samB family C-terminal domain AHML_06110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_06110 PF00672 HAMP domain AHML_06115 PF03466 LysR substrate binding domain AHML_06115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_06125 PF04241 Protein of unknown function (DUF423) AHML_06130 PF01728 FtsJ-like methyltransferase AHML_06130 PF18125 RlmM ferredoxin-like domain AHML_06140 PF18324 Hypothetical protein TT1725 AHML_06140 PF00180 Isocitrate/isopropylmalate dehydrogenase AHML_06145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AHML_06145 PF01367 5'-3' exonuclease, C-terminal SAM fold AHML_06150 PF03641 Possible lysine decarboxylase AHML_06150 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AHML_06150 PF11892 Domain of unknown function (DUF3412) AHML_06155 PF07694 5TMR of 5TMR-LYT AHML_06155 PF00990 Diguanylate cyclase, GGDEF domain AHML_06165 PF14489 QueF-like protein AHML_06165 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AHML_06170 PF07348 Syd protein (SUKH-2) AHML_06175 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AHML_06200 PF04287 tRNA pseudouridine synthase C AHML_06205 PF00849 RNA pseudouridylate synthase AHML_06210 PF00258 Flavodoxin AHML_06215 PF02264 LamB porin AHML_06220 PF07148 Maltose operon periplasmic protein precursor (MalM) AHML_06225 PF02378 Phosphotransferase system, EIIC AHML_06225 PF00367 phosphotransferase system, EIIB AHML_06230 PF11944 Protein of unknown function (DUF3461) AHML_06235 PF14602 Hexapeptide repeat of succinyl-transferase AHML_06235 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AHML_06235 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_06240 PF01909 Nucleotidyltransferase domain AHML_06240 PF01966 HD domain AHML_06240 PF08335 GlnD PII-uridylyltransferase AHML_06240 PF01842 ACT domain AHML_06245 PF00557 Metallopeptidase family M24 AHML_06250 PF00318 Ribosomal protein S2 AHML_06255 PF00889 Elongation factor TS AHML_06260 PF00696 Amino acid kinase family AHML_06265 PF01765 Ribosome recycling factor AHML_06270 PF01255 Putative undecaprenyl diphosphate synthase AHML_06280 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AHML_06280 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AHML_06280 PF13288 DXP reductoisomerase C-terminal domain AHML_06285 PF02163 Peptidase family M50 AHML_06285 PF17820 PDZ domain AHML_06290 PF07244 Surface antigen variable number repeat AHML_06290 PF01103 Surface antigen AHML_06295 PF03938 Outer membrane protein (OmpH-like) AHML_06300 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_06300 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AHML_06305 PF07977 FabA-like domain AHML_06310 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AHML_06310 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_06315 PF02684 Lipid-A-disaccharide synthetase AHML_06320 PF01351 Ribonuclease HII AHML_06325 PF01336 OB-fold nucleic acid binding domain AHML_06325 PF07733 Bacterial DNA polymerase III alpha NTPase domain AHML_06325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AHML_06325 PF14579 Helix-hairpin-helix motif AHML_06325 PF02811 PHP domain AHML_06330 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AHML_06335 PF18500 CadC C-terminal domain 1 AHML_06335 PF00486 Transcriptional regulatory protein, C terminal AHML_06340 PF13520 Amino acid permease AHML_06345 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AHML_06345 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AHML_06345 PF01276 Orn/Lys/Arg decarboxylase, major domain AHML_06350 PF08543 Phosphomethylpyrimidine kinase AHML_06360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_06360 PF03466 LysR substrate binding domain AHML_06370 PF12706 Beta-lactamase superfamily domain AHML_06375 PF03466 LysR substrate binding domain AHML_06375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_06380 PF13520 Amino acid permease AHML_06385 PF13302 Acetyltransferase (GNAT) domain AHML_06390 PF12848 ABC transporter AHML_06390 PF00005 ABC transporter AHML_06390 PF16326 ABC transporter C-terminal domain AHML_06400 PF05649 Peptidase family M13 AHML_06400 PF01431 Peptidase family M13 AHML_06405 PF01171 PP-loop family AHML_06405 PF09179 TilS substrate binding domain AHML_06405 PF11734 TilS substrate C-terminal domain AHML_06410 PF00990 Diguanylate cyclase, GGDEF domain AHML_06415 PF00999 Sodium/hydrogen exchanger family AHML_06415 PF02254 TrkA-N domain AHML_06415 PF02080 TrkA-C domain AHML_06435 PF00072 Response regulator receiver domain AHML_06435 PF00196 Bacterial regulatory proteins, luxR family AHML_06445 PF00128 Alpha amylase, catalytic domain AHML_06460 PF00535 Glycosyl transferase family 2 AHML_06475 PF01471 Putative peptidoglycan binding domain AHML_06475 PF03734 L,D-transpeptidase catalytic domain AHML_06480 PF05951 Bacterial protein of unknown function (DUF882) AHML_06490 PF03458 UPF0126 domain AHML_06500 PF02463 RecF/RecN/SMC N terminal domain AHML_06500 PF06470 SMC proteins Flexible Hinge Domain AHML_06505 PF04354 ZipA, C-terminal FtsZ-binding domain AHML_06510 PF00533 BRCA1 C Terminus (BRCT) domain AHML_06510 PF12826 Helix-hairpin-helix motif AHML_06510 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AHML_06510 PF01653 NAD-dependent DNA ligase adenylation domain AHML_06510 PF03120 NAD-dependent DNA ligase OB-fold domain AHML_06520 PF13597 Anaerobic ribonucleoside-triphosphate reductase AHML_06520 PF03477 ATP cone domain AHML_06530 PF01679 Proteolipid membrane potential modulator AHML_06555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_06555 PF00529 HlyD membrane-fusion protein of T1SS AHML_06560 PF01047 MarR family AHML_06565 PF03390 2-hydroxycarboxylate transporter family AHML_06570 PF03949 Malic enzyme, NAD binding domain AHML_06570 PF00390 Malic enzyme, N-terminal domain AHML_06575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_06575 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AHML_06575 PF17203 Single cache domain 3 AHML_06575 PF00989 PAS fold AHML_06580 PF12431 Transcriptional regulator AHML_06580 PF00072 Response regulator receiver domain AHML_06585 PF00892 EamA-like transporter family AHML_06595 PF00171 Aldehyde dehydrogenase family AHML_06600 PF01590 GAF domain AHML_06600 PF02954 Bacterial regulatory protein, Fis family AHML_06600 PF00158 Sigma-54 interaction domain AHML_06605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHML_06605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHML_06605 PF02770 Acyl-CoA dehydrogenase, middle domain AHML_06610 PF02515 CoA-transferase family III AHML_06615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHML_06620 PF00486 Transcriptional regulatory protein, C terminal AHML_06620 PF00072 Response regulator receiver domain AHML_06625 PF11808 Phosphate regulon sensor protein PhoR AHML_06625 PF00989 PAS fold AHML_06625 PF00512 His Kinase A (phospho-acceptor) domain AHML_06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_06630 PF12849 PBP superfamily domain AHML_06635 PF01435 Peptidase family M48 AHML_06645 PF00480 ROK family AHML_06650 PF03932 CutC family AHML_06655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AHML_06655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHML_06660 PF00005 ABC transporter AHML_06680 PF00293 NUDIX domain AHML_06690 PF08534 Redoxin AHML_06695 PF01699 Sodium/calcium exchanger protein AHML_06700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AHML_06700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AHML_06705 PF01235 Sodium:alanine symporter family AHML_06715 PF00860 Permease family AHML_06720 PF00072 Response regulator receiver domain AHML_06720 PF00990 Diguanylate cyclase, GGDEF domain AHML_06725 PF10692 Protein of unknown function (DUF2498) AHML_06730 PF01554 MatE AHML_06735 PF12833 Helix-turn-helix domain AHML_06740 PF03949 Malic enzyme, NAD binding domain AHML_06740 PF00390 Malic enzyme, N-terminal domain AHML_06745 PF01389 OmpA-like transmembrane domain AHML_06745 PF00691 OmpA family AHML_06750 PF00691 OmpA family AHML_06750 PF01389 OmpA-like transmembrane domain AHML_06755 PF00691 OmpA family AHML_06755 PF01389 OmpA-like transmembrane domain AHML_06775 PF00209 Sodium:neurotransmitter symporter family AHML_06780 PF01734 Patatin-like phospholipase AHML_06785 PF00990 Diguanylate cyclase, GGDEF domain AHML_06790 PF00529 HlyD membrane-fusion protein of T1SS AHML_06790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_06795 PF00873 AcrB/AcrD/AcrF family AHML_06805 PF08497 Radical SAM N-terminal AHML_06805 PF11842 Domain of unknown function (DUF3362) AHML_06805 PF04055 Radical SAM superfamily AHML_06825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AHML_06835 PF02075 Crossover junction endodeoxyribonuclease RuvC AHML_06840 PF00230 Major intrinsic protein AHML_06845 PF01464 Transglycosylase SLT domain AHML_06845 PF10145 Phage-related minor tail protein AHML_06845 PF01551 Peptidase family M23 AHML_06850 PF00128 Alpha amylase, catalytic domain AHML_06855 PF01551 Peptidase family M23 AHML_06870 PF13396 Phospholipase_D-nuclease N-terminal AHML_06870 PF13091 PLD-like domain AHML_06880 PF00551 Formyl transferase AHML_06880 PF01842 ACT domain AHML_06885 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AHML_06895 PF00085 Thioredoxin AHML_06900 PF01648 4'-phosphopantetheinyl transferase superfamily AHML_06905 PF00877 NlpC/P60 family AHML_06910 PF05971 RNA methyltransferase AHML_06925 PF01476 LysM domain AHML_06925 PF03734 L,D-transpeptidase catalytic domain AHML_06925 PF17969 L,D-transpeptidase C-terminal domain AHML_06930 PF00271 Helicase conserved C-terminal domain AHML_06930 PF00176 SNF2 family N-terminal domain AHML_06995 PF04002 RadC-like JAB domain AHML_07070 PF05930 Prophage CP4-57 regulatory protein (AlpA) AHML_07080 PF13356 Arm DNA-binding domain AHML_07080 PF00589 Phage integrase family AHML_07085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_07090 PF00528 Binding-protein-dependent transport system inner membrane component AHML_07095 PF00528 Binding-protein-dependent transport system inner membrane component AHML_07095 PF12911 N-terminal TM domain of oligopeptide transport permease C AHML_07100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_07100 PF00005 ABC transporter AHML_07105 PF00465 Iron-containing alcohol dehydrogenase AHML_07110 PF05025 RbsD / FucU transport protein family AHML_07120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AHML_07120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AHML_07125 PF02952 L-fucose isomerase, C-terminal domain AHML_07125 PF07881 L-fucose isomerase, first N-terminal domain AHML_07125 PF07882 L-fucose isomerase, second N-terminal domain AHML_07130 PF07690 Major Facilitator Superfamily AHML_07135 PF08220 DeoR-like helix-turn-helix domain AHML_07135 PF00455 DeoR C terminal sensor domain AHML_07140 PF00141 Peroxidase AHML_07145 PF00701 Dihydrodipicolinate synthetase family AHML_07150 PF01418 Helix-turn-helix domain, rpiR family AHML_07150 PF01380 SIS domain AHML_07155 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AHML_07160 PF00480 ROK family AHML_07165 PF00474 Sodium:solute symporter family AHML_07170 PF04074 YhcH/YjgK/YiaL AHML_07175 PF09264 Vibrio cholerae sialidase, lectin insertion AHML_07175 PF13088 BNR repeat-like domain AHML_07200 PF00893 Small Multidrug Resistance protein AHML_07205 PF00893 Small Multidrug Resistance protein AHML_07215 PF06130 Phosphate propanoyltransferase AHML_07225 PF13187 4Fe-4S dicluster domain AHML_07225 PF04055 Radical SAM superfamily AHML_07230 PF01228 Glycine radical AHML_07230 PF02901 Pyruvate formate lyase-like AHML_07235 PF00465 Iron-containing alcohol dehydrogenase AHML_07235 PF00171 Aldehyde dehydrogenase family AHML_07245 PF00465 Iron-containing alcohol dehydrogenase AHML_07245 PF00171 Aldehyde dehydrogenase family AHML_07250 PF00936 BMC domain AHML_07255 PF00936 BMC domain AHML_07260 PF00936 BMC domain AHML_07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_07280 PF03466 LysR substrate binding domain AHML_07285 PF02634 FdhD/NarQ family AHML_07290 PF00384 Molybdopterin oxidoreductase AHML_07300 PF00440 Bacterial regulatory proteins, tetR family AHML_07305 PF09317 Domain of unknown function (DUF1974) AHML_07305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHML_07305 PF02770 Acyl-CoA dehydrogenase, middle domain AHML_07305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHML_07310 PF00873 AcrB/AcrD/AcrF family AHML_07320 PF00224 Pyruvate kinase, barrel domain AHML_07320 PF02887 Pyruvate kinase, alpha/beta domain AHML_07325 PF01418 Helix-turn-helix domain, rpiR family AHML_07325 PF01380 SIS domain AHML_07330 PF02685 Glucokinase AHML_07340 PF00072 Response regulator receiver domain AHML_07340 PF00486 Transcriptional regulatory protein, C terminal AHML_07345 PF00005 ABC transporter AHML_07345 PF03412 Peptidase C39 family AHML_07345 PF00664 ABC transporter transmembrane region AHML_07355 PF00664 ABC transporter transmembrane region AHML_07355 PF03412 Peptidase C39 family AHML_07355 PF00005 ABC transporter AHML_07365 PF02794 RTX toxin acyltransferase family AHML_07370 PF07634 RtxA repeat AHML_07370 PF12146 Serine aminopeptidase, S33 AHML_07370 PF16671 Actin cross-linking domain AHML_07370 PF11647 Membrane Localization Domain AHML_07370 PF11713 Peptidase C80 family AHML_07380 PF04055 Radical SAM superfamily AHML_07380 PF00919 Uncharacterized protein family UPF0004 AHML_07380 PF18693 TRAM domain AHML_07385 PF00072 Response regulator receiver domain AHML_07395 PF02049 Flagellar hook-basal body complex protein FliE AHML_07400 PF01514 Secretory protein of YscJ/FliF family AHML_07400 PF08345 Flagellar M-ring protein C-terminal AHML_07405 PF14841 FliG middle domain AHML_07405 PF01706 FliG C-terminal domain AHML_07405 PF14842 FliG N-terminal domain AHML_07415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AHML_07415 PF18269 T3SS EscN ATPase C-terminal domain AHML_07435 PF02154 Flagellar motor switch protein FliM AHML_07435 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AHML_07440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AHML_07445 PF04347 Flagellar biosynthesis protein, FliO AHML_07450 PF00813 FliP family AHML_07455 PF01313 Bacterial export proteins, family 3 AHML_07460 PF01311 Bacterial export proteins, family 1 AHML_07465 PF01312 FlhB HrpN YscU SpaS Family AHML_07470 PF00771 FHIPEP family AHML_07475 PF00448 SRP54-type protein, GTPase domain AHML_07480 PF10609 NUBPL iron-transfer P-loop NTPase AHML_07485 PF04542 Sigma-70 region 2 AHML_07485 PF04539 Sigma-70 region 3 AHML_07485 PF04545 Sigma-70, region 4 AHML_07490 PF00072 Response regulator receiver domain AHML_07495 PF04344 Chemotaxis phosphatase, CheZ AHML_07500 PF01627 Hpt domain AHML_07500 PF07194 P2 response regulator binding domain AHML_07500 PF01584 CheW-like domain AHML_07500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_07500 PF02895 Signal transducing histidine kinase, homodimeric domain AHML_07505 PF01339 CheB methylesterase AHML_07505 PF00072 Response regulator receiver domain AHML_07510 PF01618 MotA/TolQ/ExbB proton channel family AHML_07515 PF13677 Membrane MotB of proton-channel complex MotA/MotB AHML_07515 PF00691 OmpA family AHML_07520 PF13614 AAA domain AHML_07530 PF01584 CheW-like domain AHML_07540 PF00005 ABC transporter AHML_07545 PF03379 CcmB protein AHML_07550 PF01578 Cytochrome C assembly protein AHML_07555 PF04995 Heme exporter protein D (CcmD) AHML_07560 PF03100 CcmE AHML_07565 PF01578 Cytochrome C assembly protein AHML_07565 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AHML_07570 PF08534 Redoxin AHML_07575 PF03918 Cytochrome C biogenesis protein AHML_07580 PF03918 Cytochrome C biogenesis protein AHML_07585 PF04333 MlaA lipoprotein AHML_07590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AHML_07590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AHML_07595 PF00462 Glutaredoxin AHML_07600 PF01029 NusB family AHML_07600 PF01189 16S rRNA methyltransferase RsmB/F AHML_07615 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AHML_07615 PF01243 Pyridoxamine 5'-phosphate oxidase AHML_07620 PF02798 Glutathione S-transferase, N-terminal domain AHML_07630 PF13508 Acetyltransferase (GNAT) domain AHML_07640 PF08007 Cupin superfamily protein AHML_07645 PF00206 Lyase AHML_07645 PF08328 Adenylosuccinate lyase C-terminal AHML_07650 PF04356 Protein of unknown function (DUF489) AHML_07660 PF00293 NUDIX domain AHML_07665 PF00849 RNA pseudouridylate synthase AHML_07675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AHML_07680 PF07690 Major Facilitator Superfamily AHML_07685 PF02378 Phosphotransferase system, EIIC AHML_07685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AHML_07685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHML_07705 PF00583 Acetyltransferase (GNAT) family AHML_07720 PF00356 Bacterial regulatory proteins, lacI family AHML_07720 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHML_07725 PF02378 Phosphotransferase system, EIIC AHML_07725 PF00367 phosphotransferase system, EIIB AHML_07730 PF00155 Aminotransferase class I and II AHML_07755 PF01238 Phosphomannose isomerase type I AHML_07760 PF12833 Helix-turn-helix domain AHML_07765 PF00180 Isocitrate/isopropylmalate dehydrogenase AHML_07775 PF00291 Pyridoxal-phosphate dependent enzyme AHML_07780 PF02447 GntP family permease AHML_07785 PF03466 LysR substrate binding domain AHML_07785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_07810 PF01420 Type I restriction modification DNA specificity domain AHML_07815 PF02384 N-6 DNA Methylase AHML_07815 PF12161 HsdM N-terminal domain AHML_07820 PF04851 Type III restriction enzyme, res subunit AHML_07820 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AHML_07820 PF00271 Helicase conserved C-terminal domain AHML_07820 PF08463 EcoEI R protein C-terminal AHML_07880 PF08765 Mor transcription activator family AHML_07920 PF08461 Ribonuclease R winged-helix domain AHML_07925 PF11985 Protein of unknown function (DUF3486) AHML_07930 PF03237 Terminase-like family AHML_07935 PF06074 Protein of unknown function (DUF935) AHML_07955 PF10123 Mu-like prophage I protein AHML_07960 PF10124 Mu-like prophage major head subunit gpT AHML_08035 PF08463 EcoEI R protein C-terminal AHML_08035 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AHML_08035 PF04851 Type III restriction enzyme, res subunit AHML_08035 PF00271 Helicase conserved C-terminal domain AHML_08040 PF01668 SmpB protein AHML_08045 PF03364 Polyketide cyclase / dehydrase and lipid transport AHML_08055 PF13460 NAD(P)H-binding AHML_08060 PF04355 SmpA / OmlA family AHML_08090 PF13629 Pilus formation protein N terminal region AHML_08090 PF00263 Bacterial type II and III secretion system protein AHML_08090 PF04972 BON domain AHML_08105 PF00437 Type II/IV secretion system protein AHML_08140 PF00465 Iron-containing alcohol dehydrogenase AHML_08145 PF01048 Phosphorylase superfamily AHML_08150 PF00849 RNA pseudouridylate synthase AHML_08155 PF01156 Inosine-uridine preferring nucleoside hydrolase AHML_08170 PF07509 Protein of unknown function (DUF1523) AHML_08175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_08175 PF00672 HAMP domain AHML_08180 PF01810 LysE type translocator AHML_08190 PF03471 Transporter associated domain AHML_08190 PF00999 Sodium/hydrogen exchanger family AHML_08190 PF02080 TrkA-C domain AHML_08200 PF03471 Transporter associated domain AHML_08200 PF00999 Sodium/hydrogen exchanger family AHML_08200 PF02080 TrkA-C domain AHML_08210 PF02557 D-alanyl-D-alanine carboxypeptidase AHML_08215 PF07687 Peptidase dimerisation domain AHML_08215 PF01546 Peptidase family M20/M25/M40 AHML_08220 PF03960 ArsC family AHML_08225 PF03466 LysR substrate binding domain AHML_08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_08235 PF03606 C4-dicarboxylate anaerobic carrier AHML_08240 PF07687 Peptidase dimerisation domain AHML_08240 PF01546 Peptidase family M20/M25/M40 AHML_08250 PF03605 Anaerobic c4-dicarboxylate membrane transporter AHML_08255 PF00152 tRNA synthetases class II (D, K and N) AHML_08255 PF01336 OB-fold nucleic acid binding domain AHML_08275 PF04055 Radical SAM superfamily AHML_08275 PF06968 Biotin and Thiamin Synthesis associated domain AHML_08280 PF00155 Aminotransferase class I and II AHML_08285 PF12697 Alpha/beta hydrolase family AHML_08285 PF08241 Methyltransferase domain AHML_08295 PF01435 Peptidase family M48 AHML_08300 PF08447 PAS fold AHML_08300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_08300 PF13426 PAS domain AHML_08305 PF03473 MOSC domain AHML_08305 PF00111 2Fe-2S iron-sulfur cluster binding domain AHML_08305 PF03476 MOSC N-terminal beta barrel domain AHML_08305 PF03473 MOSC domain AHML_08305 PF00111 2Fe-2S iron-sulfur cluster binding domain AHML_08305 PF03476 MOSC N-terminal beta barrel domain AHML_08310 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AHML_08310 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_08310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AHML_08315 PF10371 Domain of unknown function AHML_08315 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AHML_08315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHML_08315 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AHML_08315 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AHML_08320 PF01804 Penicillin amidase AHML_08340 PF01554 MatE AHML_08360 PF00291 Pyridoxal-phosphate dependent enzyme AHML_08370 PF00465 Iron-containing alcohol dehydrogenase AHML_08380 PF08359 YsiA-like protein, C-terminal region AHML_08380 PF00440 Bacterial regulatory proteins, tetR family AHML_08385 PF00171 Aldehyde dehydrogenase family AHML_08395 PF00877 NlpC/P60 family AHML_08400 PF12563 Hemolytic toxin N terminal AHML_08400 PF07968 Leukocidin/Hemolysin toxin family AHML_08405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_08405 PF03466 LysR substrate binding domain AHML_08410 PF10417 C-terminal domain of 1-Cys peroxiredoxin AHML_08410 PF00578 AhpC/TSA family AHML_08430 PF08003 Protein of unknown function (DUF1698) AHML_08435 PF13649 Methyltransferase domain AHML_08440 PF01904 Protein of unknown function DUF72 AHML_08445 PF02938 GAD domain AHML_08445 PF01336 OB-fold nucleic acid binding domain AHML_08445 PF00152 tRNA synthetases class II (D, K and N) AHML_08450 PF01709 Transcriptional regulator AHML_08455 PF08019 Phosphoethanolamine transferase EptA/EptB AHML_08455 PF00884 Sulfatase AHML_08465 PF00480 ROK family AHML_08465 PF01047 MarR family AHML_08470 PF01979 Amidohydrolase family AHML_08475 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AHML_08480 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AHML_08480 PF02378 Phosphotransferase system, EIIC AHML_08480 PF00367 phosphotransferase system, EIIB AHML_08485 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AHML_08485 PF00728 Glycosyl hydrolase family 20, catalytic domain AHML_08485 PF02838 Glycosyl hydrolase family 20, domain 2 AHML_08485 PF03173 Putative carbohydrate binding domain AHML_08490 PF00749 tRNA synthetases class I (E and Q), catalytic domain AHML_08490 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AHML_08495 PF01475 Ferric uptake regulator family AHML_08505 PF00258 Flavodoxin AHML_08510 PF01402 Ribbon-helix-helix protein, copG family AHML_08520 PF12697 Alpha/beta hydrolase family AHML_08525 PF03925 SeqA protein C-terminal domain AHML_08525 PF17206 SeqA protein N-terminal domain AHML_08530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AHML_08530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AHML_08530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AHML_08530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AHML_08540 PF01047 MarR family AHML_08545 PF13406 Transglycosylase SLT domain AHML_08550 PF01066 CDP-alcohol phosphatidyltransferase AHML_08555 PF00005 ABC transporter AHML_08565 PF13416 Bacterial extracellular solute-binding protein AHML_08570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHML_08570 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_08570 PF00403 Heavy-metal-associated domain AHML_08575 PF02627 Carboxymuconolactone decarboxylase family AHML_08585 PF01625 Peptide methionine sulfoxide reductase AHML_08600 PF01103 Surface antigen AHML_08600 PF17243 POTRA domain TamA domain 1 AHML_08600 PF07244 Surface antigen variable number repeat AHML_08605 PF04357 TamB, inner membrane protein subunit of TAM complex AHML_08615 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AHML_08620 PF00990 Diguanylate cyclase, GGDEF domain AHML_08620 PF00563 EAL domain AHML_08620 PF03707 Bacterial signalling protein N terminal repeat AHML_08625 PF01464 Transglycosylase SLT domain AHML_08625 PF14718 Soluble lytic murein transglycosylase L domain AHML_08630 PF00356 Bacterial regulatory proteins, lacI family AHML_08640 PF03061 Thioesterase superfamily AHML_08650 PF03372 Endonuclease/Exonuclease/phosphatase family AHML_08655 PF01476 LysM domain AHML_08655 PF01464 Transglycosylase SLT domain AHML_08660 PF00753 Metallo-beta-lactamase superfamily AHML_08660 PF16123 Hydroxyacylglutathione hydrolase C-terminus AHML_08665 PF08241 Methyltransferase domain AHML_08670 PF00075 RNase H AHML_08675 PF00929 Exonuclease AHML_08685 PF11849 Domain of unknown function (DUF3369) AHML_08690 PF02770 Acyl-CoA dehydrogenase, middle domain AHML_08690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHML_08690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHML_08690 PF09317 Domain of unknown function (DUF1974) AHML_08695 PF13580 SIS domain AHML_08700 PF13230 Glutamine amidotransferases class-II AHML_08710 PF01933 Uncharacterised protein family UPF0052 AHML_08720 PF00512 His Kinase A (phospho-acceptor) domain AHML_08720 PF17149 Periplasmic sensor domain found in signal transduction proteins AHML_08720 PF00672 HAMP domain AHML_08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_08720 PF00072 Response regulator receiver domain AHML_08720 PF01627 Hpt domain AHML_08730 PF00072 Response regulator receiver domain AHML_08730 PF00196 Bacterial regulatory proteins, luxR family AHML_08735 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AHML_08735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_08735 PF00672 HAMP domain AHML_08735 PF07730 Histidine kinase AHML_08740 PF04055 Radical SAM superfamily AHML_08740 PF06463 Molybdenum Cofactor Synthesis C AHML_08745 PF13187 4Fe-4S dicluster domain AHML_08745 PF00037 4Fe-4S binding domain AHML_08745 PF12800 4Fe-4S binding domain AHML_08755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHML_08755 PF10518 TAT (twin-arginine translocation) pathway signal sequence AHML_08755 PF00384 Molybdopterin oxidoreductase AHML_08755 PF01568 Molydopterin dinucleotide binding domain AHML_08760 PF12800 4Fe-4S binding domain AHML_08760 PF12838 4Fe-4S dicluster domain AHML_08765 PF12801 4Fe-4S binding domain AHML_08765 PF13237 4Fe-4S dicluster domain AHML_08770 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AHML_08775 PF03264 NapC/NirT cytochrome c family, N-terminal region AHML_08780 PF00994 Probable molybdopterin binding domain AHML_08785 PF01967 MoaC family AHML_08790 PF02597 ThiS family AHML_08795 PF02391 MoaE protein AHML_08805 PF00528 Binding-protein-dependent transport system inner membrane component AHML_08810 PF03459 TOBE domain AHML_08810 PF00005 ABC transporter AHML_08815 PF00561 alpha/beta hydrolase fold AHML_08820 PF00899 ThiF family AHML_08825 PF03453 MoeA N-terminal region (domain I and II) AHML_08825 PF03454 MoeA C-terminal region (domain IV) AHML_08825 PF00994 Probable molybdopterin binding domain AHML_08830 PF01227 GTP cyclohydrolase I AHML_08835 PF00672 HAMP domain AHML_08835 PF17200 Single Cache domain 2 AHML_08835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_08840 PF01268 Formate--tetrahydrofolate ligase AHML_08850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_08850 PF03466 LysR substrate binding domain AHML_08855 PF04264 YceI-like domain AHML_08880 PF01546 Peptidase family M20/M25/M40 AHML_08880 PF07687 Peptidase dimerisation domain AHML_08885 PF17810 Arginine decarboxylase helical bundle domain AHML_08885 PF17944 Arginine decarboxylase C-terminal helical extension AHML_08885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AHML_08895 PF00672 HAMP domain AHML_08895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_08905 PF01042 Endoribonuclease L-PSP AHML_08910 PF03313 Serine dehydratase alpha chain AHML_08915 PF13309 HTH domain AHML_08915 PF08348 YheO-like PAS domain AHML_08920 PF00300 Histidine phosphatase superfamily (branch 1) AHML_08925 PF04851 Type III restriction enzyme, res subunit AHML_08925 PF00271 Helicase conserved C-terminal domain AHML_08945 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AHML_08945 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AHML_08955 PF00849 RNA pseudouridylate synthase AHML_08955 PF01479 S4 domain AHML_08960 PF07690 Major Facilitator Superfamily AHML_08970 PF03466 LysR substrate binding domain AHML_08970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_08975 PF07690 Major Facilitator Superfamily AHML_08985 PF10689 Protein of unknown function (DUF2496) AHML_09000 PF04391 Protein of unknown function (DUF533) AHML_09010 PF00392 Bacterial regulatory proteins, gntR family AHML_09010 PF00155 Aminotransferase class I and II AHML_09015 PF01654 Cytochrome bd terminal oxidase subunit I AHML_09020 PF02322 Cytochrome bd terminal oxidase subunit II AHML_09030 PF07690 Major Facilitator Superfamily AHML_09035 PF00248 Aldo/keto reductase family AHML_09055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_09055 PF03466 LysR substrate binding domain AHML_09060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AHML_09060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AHML_09065 PF00230 Major intrinsic protein AHML_09070 PF07690 Major Facilitator Superfamily AHML_09075 PF00455 DeoR C terminal sensor domain AHML_09075 PF08220 DeoR-like helix-turn-helix domain AHML_09080 PF01266 FAD dependent oxidoreductase AHML_09080 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AHML_09085 PF03009 Glycerophosphoryl diester phosphodiesterase family AHML_09090 PF00793 DAHP synthetase I family AHML_09095 PF02153 Prephenate dehydrogenase AHML_09095 PF01817 Chorismate mutase type II AHML_09100 PF03466 LysR substrate binding domain AHML_09100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_09105 PF04219 Protein of unknown function, DUF AHML_09110 PF03974 Ecotin AHML_09130 PF00326 Prolyl oligopeptidase family AHML_09130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AHML_09135 PF07715 TonB-dependent Receptor Plug Domain AHML_09135 PF00593 TonB dependent receptor AHML_09140 PF11893 Domain of unknown function (DUF3413) AHML_09140 PF00884 Sulfatase AHML_09145 PF07208 Protein of unknown function (DUF1414) AHML_09150 PF04245 37-kD nucleoid-associated bacterial protein AHML_09155 PF01547 Bacterial extracellular solute-binding protein AHML_09160 PF14785 Maltose transport system permease protein MalF P2 domain AHML_09160 PF00528 Binding-protein-dependent transport system inner membrane component AHML_09165 PF00528 Binding-protein-dependent transport system inner membrane component AHML_09170 PF00005 ABC transporter AHML_09170 PF08402 TOBE domain AHML_09175 PF03976 Polyphosphate kinase 2 (PPK2) AHML_09180 PF00561 alpha/beta hydrolase fold AHML_09190 PF01594 AI-2E family transporter AHML_09195 PF01206 Sulfurtransferase TusA AHML_09200 PF13181 Tetratricopeptide repeat AHML_09200 PF01435 Peptidase family M48 AHML_09205 PF00578 AhpC/TSA family AHML_09210 PF03960 ArsC family AHML_09230 PF04336 Acyl carrier protein phosphodiesterase AHML_09235 PF01979 Amidohydrolase family AHML_09240 PF03956 Lysine exporter LysO AHML_09245 PF00005 ABC transporter AHML_09250 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_09255 PF00528 Binding-protein-dependent transport system inner membrane component AHML_09260 PF00528 Binding-protein-dependent transport system inner membrane component AHML_09270 PF04055 Radical SAM superfamily AHML_09275 PF00563 EAL domain AHML_09275 PF00990 Diguanylate cyclase, GGDEF domain AHML_09275 PF03707 Bacterial signalling protein N terminal repeat AHML_09280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHML_09280 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_09295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_09295 PF00529 HlyD membrane-fusion protein of T1SS AHML_09300 PF02321 Outer membrane efflux protein AHML_09305 PF01594 AI-2E family transporter AHML_09310 PF07687 Peptidase dimerisation domain AHML_09310 PF01546 Peptidase family M20/M25/M40 AHML_09315 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AHML_09315 PF00207 Alpha-2-macroglobulin family AHML_09315 PF07703 Alpha-2-macroglobulin bait region domain AHML_09315 PF07678 A-macroglobulin TED domain AHML_09315 PF01835 MG2 domain AHML_09315 PF17962 Bacterial macroglobulin domain 6 AHML_09315 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AHML_09315 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AHML_09315 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AHML_09320 PF06832 Penicillin-Binding Protein C-terminus Family AHML_09320 PF00905 Penicillin binding protein transpeptidase domain AHML_09320 PF00912 Transglycosylase AHML_09330 PF02568 Thiamine biosynthesis protein (ThiI) AHML_09330 PF02926 THUMP domain AHML_09340 PF03458 UPF0126 domain AHML_09345 PF07196 Flagellin hook IN motif AHML_09345 PF00669 Bacterial flagellin N-terminal helical region AHML_09345 PF00700 Bacterial flagellin C-terminal helical region AHML_09350 PF00669 Bacterial flagellin N-terminal helical region AHML_09350 PF07196 Flagellin hook IN motif AHML_09350 PF00700 Bacterial flagellin C-terminal helical region AHML_09355 PF00665 Integrase core domain AHML_09360 PF01527 Transposase AHML_09365 PF00669 Bacterial flagellin N-terminal helical region AHML_09365 PF00700 Bacterial flagellin C-terminal helical region AHML_09375 PF02465 Flagellar hook-associated protein 2 N-terminus AHML_09375 PF07196 Flagellin hook IN motif AHML_09375 PF07195 Flagellar hook-associated protein 2 C-terminus AHML_09380 PF02561 Flagellar protein FliS AHML_09410 PF08666 SAF domain AHML_09410 PF03102 NeuB family AHML_09420 PF00202 Aminotransferase class-III AHML_09435 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AHML_09440 PF02719 Polysaccharide biosynthesis protein AHML_09445 PF01497 Periplasmic binding protein AHML_09455 PF01048 Phosphorylase superfamily AHML_09465 PF02535 ZIP Zinc transporter AHML_09470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_09470 PF00672 HAMP domain AHML_09475 PF00459 Inositol monophosphatase family AHML_09485 PF02798 Glutathione S-transferase, N-terminal domain AHML_09485 PF00043 Glutathione S-transferase, C-terminal domain AHML_09490 PF07690 Major Facilitator Superfamily AHML_09495 PF05164 Cell division protein ZapA AHML_09500 PF03695 Uncharacterised protein family (UPF0149) AHML_09505 PF01494 FAD binding domain AHML_09510 PF01494 FAD binding domain AHML_09515 PF01571 Aminomethyltransferase folate-binding domain AHML_09515 PF08669 Glycine cleavage T-protein C-terminal barrel domain AHML_09520 PF01597 Glycine cleavage H-protein AHML_09525 PF02347 Glycine cleavage system P-protein AHML_09530 PF01022 Bacterial regulatory protein, arsR family AHML_09535 PF01758 Sodium Bile acid symporter family AHML_09540 PF03960 ArsC family AHML_09545 PF08241 Methyltransferase domain AHML_09555 PF07690 Major Facilitator Superfamily AHML_09560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_09560 PF13192 Thioredoxin domain AHML_09565 PF10417 C-terminal domain of 1-Cys peroxiredoxin AHML_09565 PF00578 AhpC/TSA family AHML_09570 PF00571 CBS domain AHML_09575 PF02547 Queuosine biosynthesis protein AHML_09580 PF01702 Queuine tRNA-ribosyltransferase AHML_09585 PF02699 Preprotein translocase subunit AHML_09590 PF07549 SecD/SecF GG Motif AHML_09590 PF13721 SecD export protein N-terminal TM region AHML_09590 PF02355 Protein export membrane protein AHML_09595 PF02355 Protein export membrane protein AHML_09595 PF07549 SecD/SecF GG Motif AHML_09605 PF13181 Tetratricopeptide repeat AHML_09605 PF07719 Tetratricopeptide repeat AHML_09635 PF00588 SpoU rRNA Methylase family AHML_09640 PF02082 Transcriptional regulator AHML_09645 PF00266 Aminotransferase class-V AHML_09650 PF01592 NifU-like N terminal domain AHML_09655 PF01521 Iron-sulphur cluster biosynthesis AHML_09660 PF07743 HSCB C-terminal oligomerisation domain AHML_09665 PF00012 Hsp70 protein AHML_09670 PF00111 2Fe-2S iron-sulfur cluster binding domain AHML_09675 PF12404 Peptidase AHML_09675 PF00883 Cytosol aminopeptidase family, catalytic domain AHML_09680 PF00883 Cytosol aminopeptidase family, catalytic domain AHML_09680 PF12404 Peptidase AHML_09685 PF00334 Nucleoside diphosphate kinase AHML_09690 PF04055 Radical SAM superfamily AHML_09700 PF13464 Domain of unknown function (DUF4115) AHML_09705 PF04551 GcpE protein AHML_09710 PF03129 Anticodon binding domain AHML_09710 PF13393 Histidyl-tRNA synthetase AHML_09715 PF09976 Tetratricopeptide repeat-like domain AHML_09720 PF13360 PQQ-like domain AHML_09725 PF01926 50S ribosome-binding GTPase AHML_09725 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AHML_09730 PF07191 zinc-ribbons AHML_09735 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_09735 PF01464 Transglycosylase SLT domain AHML_09740 PF02769 AIR synthase related protein, C-terminal domain AHML_09740 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AHML_09740 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AHML_09750 PF00361 Proton-conducting membrane transporter AHML_09755 PF00361 Proton-conducting membrane transporter AHML_09760 PF00361 Proton-conducting membrane transporter AHML_09760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AHML_09765 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AHML_09770 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AHML_09775 PF12838 4Fe-4S dicluster domain AHML_09780 PF00146 NADH dehydrogenase AHML_09785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHML_09785 PF00384 Molybdopterin oxidoreductase AHML_09785 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AHML_09790 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AHML_09790 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AHML_09800 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AHML_09800 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AHML_09805 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AHML_09810 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AHML_09815 PF00691 OmpA family AHML_09815 PF13677 Membrane MotB of proton-channel complex MotA/MotB AHML_09820 PF01618 MotA/TolQ/ExbB proton channel family AHML_09830 PF04536 TPM domain AHML_09840 PF03411 Penicillin-insensitive murein endopeptidase AHML_09850 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AHML_09855 PF00248 Aldo/keto reductase family AHML_09870 PF01212 Beta-eliminating lyase AHML_09880 PF00072 Response regulator receiver domain AHML_09885 PF03466 LysR substrate binding domain AHML_09885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_09900 PF00563 EAL domain AHML_09900 PF00990 Diguanylate cyclase, GGDEF domain AHML_09900 PF03707 Bacterial signalling protein N terminal repeat AHML_09900 PF13188 PAS domain AHML_09905 PF00881 Nitroreductase family AHML_09920 PF07690 Major Facilitator Superfamily AHML_09925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_09925 PF03466 LysR substrate binding domain AHML_09930 PF03466 LysR substrate binding domain AHML_09930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_09935 PF00925 GTP cyclohydrolase II AHML_09940 PF02224 Cytidylate kinase AHML_09945 PF00575 S1 RNA binding domain AHML_09950 PF00216 Bacterial DNA-binding protein AHML_09960 PF18073 Rubredoxin metal binding domain AHML_09965 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AHML_09980 PF06508 Queuosine biosynthesis protein QueC AHML_09985 PF04055 Radical SAM superfamily AHML_09990 PF12843 Putative quorum-sensing-regulated virulence factor AHML_09995 PF01923 Cobalamin adenosyltransferase AHML_10000 PF00816 H-NS histone family AHML_10005 PF03553 Na+/H+ antiporter family AHML_10010 PF00265 Thymidine kinase AHML_10020 PF10722 Putative bacterial sensory transduction regulator AHML_10025 PF05638 Type VI secretion system effector, Hcp AHML_10030 PF04717 Type VI secretion system, phage-baseplate injector AHML_10035 PF00182 Chitinase class I AHML_10045 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AHML_10045 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AHML_10050 PF00313 'Cold-shock' DNA-binding domain AHML_10055 PF02617 ATP-dependent Clp protease adaptor protein ClpS AHML_10060 PF10431 C-terminal, D2-small domain, of ClpB protein AHML_10060 PF00004 ATPase family associated with various cellular activities (AAA) AHML_10060 PF02861 Clp amino terminal domain, pathogenicity island component AHML_10060 PF07724 AAA domain (Cdc48 subfamily) AHML_10060 PF17871 AAA lid domain AHML_10065 PF01176 Translation initiation factor 1A / IF-1 AHML_10070 PF04376 Arginine-tRNA-protein transferase, N terminus AHML_10070 PF04377 Arginine-tRNA-protein transferase, C terminus AHML_10075 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AHML_10080 PF05433 Glycine zipper 2TM domain AHML_10085 PF00990 Diguanylate cyclase, GGDEF domain AHML_10085 PF17158 Membrane-associated sensor, integral membrane domain AHML_10090 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_10095 PF01037 Lrp/AsnC ligand binding domain AHML_10100 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AHML_10100 PF01580 FtsK/SpoIIIE family AHML_10100 PF17854 FtsK alpha domain AHML_10100 PF09397 Ftsk gamma domain AHML_10105 PF03548 Outer membrane lipoprotein carrier protein LolA AHML_10110 PF00004 ATPase family associated with various cellular activities (AAA) AHML_10110 PF16193 AAA C-terminal domain AHML_10110 PF12002 MgsA AAA+ ATPase C terminal AHML_10115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AHML_10115 PF02403 Seryl-tRNA synthetase N-terminal domain AHML_10120 PF02674 Colicin V production protein AHML_10125 PF00156 Phosphoribosyl transferase domain AHML_10130 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AHML_10135 PF00005 ABC transporter AHML_10140 PF00005 ABC transporter AHML_10140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_10145 PF00528 Binding-protein-dependent transport system inner membrane component AHML_10145 PF12911 N-terminal TM domain of oligopeptide transport permease C AHML_10150 PF00528 Binding-protein-dependent transport system inner membrane component AHML_10155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_10160 PF02954 Bacterial regulatory protein, Fis family AHML_10160 PF00158 Sigma-54 interaction domain AHML_10165 PF04012 PspA/IM30 family AHML_10170 PF06667 Phage shock protein B AHML_10180 PF04317 YcjX-like family, DUF463 AHML_10185 PF05128 Domain of unknown function (DUF697) AHML_10190 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AHML_10195 PF01329 Pterin 4 alpha carbinolamine dehydratase AHML_10200 PF01329 Pterin 4 alpha carbinolamine dehydratase AHML_10205 PF18024 Helix-turn-helix domain AHML_10205 PF00158 Sigma-54 interaction domain AHML_10210 PF13689 YfiR/HmsC-like AHML_10215 PF00990 Diguanylate cyclase, GGDEF domain AHML_10215 PF17152 Periplasmic sensor domain AHML_10220 PF00691 OmpA family AHML_10225 PF03741 Integral membrane protein TerC family AHML_10235 PF08891 YfcL protein AHML_10240 PF00501 AMP-binding enzyme AHML_10245 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AHML_10245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AHML_10250 PF04172 LrgB-like family AHML_10255 PF03788 LrgA family AHML_10270 PF08411 Exonuclease C-terminal AHML_10270 PF00929 Exonuclease AHML_10275 PF11762 L-arabinose isomerase C-terminal domain AHML_10275 PF02610 L-arabinose isomerase AHML_10280 PF00596 Class II Aldolase and Adducin N-terminal domain AHML_10285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AHML_10290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHML_10295 PF00005 ABC transporter AHML_10300 PF02653 Branched-chain amino acid transport system / permease component AHML_10305 PF12833 Helix-turn-helix domain AHML_10305 PF02311 AraC-like ligand binding domain AHML_10310 PF03466 LysR substrate binding domain AHML_10310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_10315 PF05726 Pirin C-terminal cupin domain AHML_10315 PF02678 Pirin AHML_10320 PF00444 Ribosomal protein L36 AHML_10325 PF01197 Ribosomal protein L31 AHML_10340 PF01863 Protein of unknown function DUF45 AHML_10355 PF03606 C4-dicarboxylate anaerobic carrier AHML_10365 PF01266 FAD dependent oxidoreductase AHML_10365 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AHML_10370 PF02801 Beta-ketoacyl synthase, C-terminal domain AHML_10370 PF00109 Beta-ketoacyl synthase, N-terminal domain AHML_10385 PF00285 Citrate synthase, C-terminal domain AHML_10395 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AHML_10400 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AHML_10405 PF00890 FAD binding domain AHML_10405 PF02910 Fumarate reductase flavoprotein C-term AHML_10410 PF13085 2Fe-2S iron-sulfur cluster binding domain AHML_10415 PF00676 Dehydrogenase E1 component AHML_10415 PF16078 2-oxoglutarate dehydrogenase N-terminus AHML_10415 PF16870 2-oxoglutarate dehydrogenase C-terminal AHML_10415 PF02779 Transketolase, pyrimidine binding domain AHML_10420 PF00364 Biotin-requiring enzyme AHML_10420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AHML_10420 PF02817 e3 binding domain AHML_10425 PF00549 CoA-ligase AHML_10425 PF08442 ATP-grasp domain AHML_10430 PF02629 CoA binding domain AHML_10430 PF00549 CoA-ligase AHML_10440 PF03692 Putative zinc- or iron-chelating domain AHML_10445 PF01266 FAD dependent oxidoreductase AHML_10450 PF00528 Binding-protein-dependent transport system inner membrane component AHML_10455 PF00005 ABC transporter AHML_10465 PF00392 Bacterial regulatory proteins, gntR family AHML_10465 PF07702 UTRA domain AHML_10470 PF00266 Aminotransferase class-V AHML_10475 PF00202 Aminotransferase class-III AHML_10485 PF01228 Glycine radical AHML_10485 PF02901 Pyruvate formate lyase-like AHML_10490 PF01226 Formate/nitrite transporter AHML_10495 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AHML_10495 PF18381 YcaO cyclodehydratase C-terminal domain AHML_10500 PF00893 Small Multidrug Resistance protein AHML_10505 PF01118 Semialdehyde dehydrogenase, NAD binding domain AHML_10505 PF02774 Semialdehyde dehydrogenase, dimerisation domain AHML_10510 PF05193 Peptidase M16 inactive domain AHML_10510 PF00675 Insulinase (Peptidase family M16) AHML_10515 PF01053 Cys/Met metabolism PLP-dependent enzyme AHML_10525 PF13460 NAD(P)H-binding AHML_10530 PF03466 LysR substrate binding domain AHML_10530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_10535 PF00106 short chain dehydrogenase AHML_10540 PF12833 Helix-turn-helix domain AHML_10545 PF07715 TonB-dependent Receptor Plug Domain AHML_10545 PF00593 TonB dependent receptor AHML_10555 PF03466 LysR substrate binding domain AHML_10555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_10560 PF01717 Cobalamin-independent synthase, Catalytic domain AHML_10560 PF08267 Cobalamin-independent synthase, N-terminal domain AHML_10570 PF00478 IMP dehydrogenase / GMP reductase domain AHML_10570 PF00571 CBS domain AHML_10575 PF07969 Amidohydrolase family AHML_10585 PF01266 FAD dependent oxidoreductase AHML_10590 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AHML_10600 PF01212 Beta-eliminating lyase AHML_10605 PF00768 D-alanyl-D-alanine carboxypeptidase AHML_10610 PF00293 NUDIX domain AHML_10615 PF03918 Cytochrome C biogenesis protein AHML_10620 PF08534 Redoxin AHML_10625 PF01578 Cytochrome C assembly protein AHML_10625 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AHML_10630 PF03916 Polysulphide reductase, NrfD AHML_10635 PF00037 4Fe-4S binding domain AHML_10635 PF13247 4Fe-4S dicluster domain AHML_10640 PF13435 Cytochrome c554 and c-prime AHML_10640 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AHML_10645 PF02335 Cytochrome c552 AHML_10660 PF13183 4Fe-4S dicluster domain AHML_10660 PF02754 Cysteine-rich domain AHML_10665 PF00890 FAD binding domain AHML_10670 PF04324 BFD-like [2Fe-2S] binding domain AHML_10670 PF01266 FAD dependent oxidoreductase AHML_10675 PF02810 SEC-C motif AHML_10680 PF00672 HAMP domain AHML_10680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_10680 PF17200 Single Cache domain 2 AHML_10685 PF00480 ROK family AHML_10685 PF01047 MarR family AHML_10690 PF17203 Single cache domain 3 AHML_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_10690 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AHML_10690 PF00989 PAS fold AHML_10695 PF00072 Response regulator receiver domain AHML_10695 PF08279 HTH domain AHML_10695 PF12431 Transcriptional regulator AHML_10700 PF01970 Tripartite tricarboxylate transporter TctA family AHML_10715 PF01464 Transglycosylase SLT domain AHML_10715 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_10720 PF06826 Predicted Permease Membrane Region AHML_10720 PF02080 TrkA-C domain AHML_10725 PF17757 UvrB interaction domain AHML_10725 PF00271 Helicase conserved C-terminal domain AHML_10725 PF12344 Ultra-violet resistance protein B AHML_10725 PF04851 Type III restriction enzyme, res subunit AHML_10725 PF02151 UvrB/uvrC motif AHML_10735 PF09335 SNARE associated Golgi protein AHML_10740 PF02600 Disulfide bond formation protein DsbB AHML_10745 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AHML_10750 PF00392 Bacterial regulatory proteins, gntR family AHML_10750 PF07840 FadR C-terminal domain AHML_10755 PF04293 SpoVR like protein AHML_10760 PF04285 Protein of unknown function (DUF444) AHML_10765 PF06798 PrkA serine protein kinase C-terminal domain AHML_10765 PF08298 PrkA AAA domain AHML_10770 PF00270 DEAD/DEAH box helicase AHML_10770 PF00271 Helicase conserved C-terminal domain AHML_10770 PF09382 RQC domain AHML_10770 PF16124 RecQ zinc-binding AHML_10770 PF00570 HRDC domain AHML_10775 PF00375 Sodium:dicarboxylate symporter family AHML_10780 PF03222 Tryptophan/tyrosine permease family AHML_10785 PF00293 NUDIX domain AHML_10790 PF04715 Anthranilate synthase component I, N terminal region AHML_10790 PF00425 chorismate binding enzyme AHML_10810 PF00343 Carbohydrate phosphorylase AHML_10815 PF00939 Sodium:sulfate symporter transmembrane region AHML_10820 PF00085 Thioredoxin AHML_10825 PF00072 Response regulator receiver domain AHML_10825 PF01627 Hpt domain AHML_10825 PF00512 His Kinase A (phospho-acceptor) domain AHML_10825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHML_10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_10825 PF00672 HAMP domain AHML_10830 PF00005 ABC transporter AHML_10830 PF00664 ABC transporter transmembrane region AHML_10840 PF00664 ABC transporter transmembrane region AHML_10840 PF00005 ABC transporter AHML_10855 PF01575 MaoC like domain AHML_10860 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AHML_10860 PF00561 alpha/beta hydrolase fold AHML_10880 PF08543 Phosphomethylpyrimidine kinase AHML_10885 PF03992 Antibiotic biosynthesis monooxygenase AHML_10890 PF00465 Iron-containing alcohol dehydrogenase AHML_10895 PF00583 Acetyltransferase (GNAT) family AHML_10905 PF01928 CYTH domain AHML_10915 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AHML_10925 PF13673 Acetyltransferase (GNAT) domain AHML_10930 PF00271 Helicase conserved C-terminal domain AHML_10930 PF00270 DEAD/DEAH box helicase AHML_10935 PF00255 Glutathione peroxidase AHML_10945 PF07478 D-ala D-ala ligase C-terminus AHML_10945 PF01820 D-ala D-ala ligase N-terminus AHML_10950 PF18029 Glyoxalase-like domain AHML_10950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHML_10965 PF01925 Sulfite exporter TauE/SafE AHML_10970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_10970 PF03466 LysR substrate binding domain AHML_10980 PF14525 AraC-binding-like domain AHML_10980 PF12833 Helix-turn-helix domain AHML_10985 PF11398 Protein of unknown function (DUF2813) AHML_10995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AHML_10995 PF00128 Alpha amylase, catalytic domain AHML_11000 PF02789 Cytosol aminopeptidase family, N-terminal domain AHML_11000 PF00883 Cytosol aminopeptidase family, catalytic domain AHML_11005 PF13419 Haloacid dehalogenase-like hydrolase AHML_11010 PF01546 Peptidase family M20/M25/M40 AHML_11010 PF07687 Peptidase dimerisation domain AHML_11015 PF00365 Phosphofructokinase AHML_11020 PF00121 Triosephosphate isomerase AHML_11025 PF02698 DUF218 domain AHML_11035 PF03882 MukF winged-helix domain AHML_11035 PF17192 MukF middle domain AHML_11035 PF17193 MukF C-terminal domain AHML_11040 PF04288 MukE-like family AHML_11045 PF16330 MukB hinge domain AHML_11045 PF04310 MukB N-terminal AHML_11050 PF03330 Lytic transglycolase AHML_11050 PF05036 Sporulation related domain AHML_11065 PF01327 Polypeptide deformylase AHML_11080 PF02567 Phenazine biosynthesis-like protein AHML_11100 PF08274 PhnA Zinc-Ribbon AHML_11100 PF03831 PhnA domain AHML_11110 PF08329 Chitinase A, N-terminal domain AHML_11110 PF00704 Glycosyl hydrolases family 18 AHML_11125 PF00300 Histidine phosphatase superfamily (branch 1) AHML_11130 PF08448 PAS fold AHML_11130 PF00990 Diguanylate cyclase, GGDEF domain AHML_11140 PF01713 Smr domain AHML_11145 PF05175 Methyltransferase small domain AHML_11150 PF01264 Chorismate synthase AHML_11160 PF00270 DEAD/DEAH box helicase AHML_11160 PF00271 Helicase conserved C-terminal domain AHML_11180 PF03222 Tryptophan/tyrosine permease family AHML_11185 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHML_11185 PF00356 Bacterial regulatory proteins, lacI family AHML_11190 PF00381 PTS HPr component phosphorylation site AHML_11190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHML_11195 PF00294 pfkB family carbohydrate kinase AHML_11200 PF02378 Phosphotransferase system, EIIC AHML_11200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AHML_11205 PF06560 Glucose-6-phosphate isomerase (GPI) AHML_11210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHML_11210 PF00356 Bacterial regulatory proteins, lacI family AHML_11225 PF03830 PTS system sorbose subfamily IIB component AHML_11225 PF03610 PTS system fructose IIA component AHML_11230 PF03609 PTS system sorbose-specific iic component AHML_11235 PF03613 PTS system mannose/fructose/sorbose family IID component AHML_11245 PF06945 Protein of unknown function (DUF1289) AHML_11250 PF03562 MltA specific insert domain AHML_11250 PF06725 3D domain AHML_11255 PF00111 2Fe-2S iron-sulfur cluster binding domain AHML_11260 PF00268 Ribonucleotide reductase, small chain AHML_11265 PF00317 Ribonucleotide reductase, all-alpha domain AHML_11265 PF02867 Ribonucleotide reductase, barrel domain AHML_11265 PF03477 ATP cone domain AHML_11270 PF13419 Haloacid dehalogenase-like hydrolase AHML_11280 PF03989 DNA gyrase C-terminal domain, beta-propeller AHML_11280 PF00521 DNA gyrase/topoisomerase IV, subunit A AHML_11290 PF04055 Radical SAM superfamily AHML_11300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AHML_11300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AHML_11300 PF02824 TGS domain AHML_11300 PF03129 Anticodon binding domain AHML_11305 PF05198 Translation initiation factor IF-3, N-terminal domain AHML_11305 PF00707 Translation initiation factor IF-3, C-terminal domain AHML_11310 PF01632 Ribosomal protein L35 AHML_11315 PF00453 Ribosomal protein L20 AHML_11320 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AHML_11320 PF01409 tRNA synthetases class II core domain (F) AHML_11325 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AHML_11325 PF01588 Putative tRNA binding domain AHML_11325 PF03147 Ferredoxin-fold anticodon binding domain AHML_11325 PF03484 tRNA synthetase B5 domain AHML_11325 PF03483 B3/4 domain AHML_11330 PF00216 Bacterial DNA-binding protein AHML_11335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_11335 PF00512 His Kinase A (phospho-acceptor) domain AHML_11335 PF09456 RcsC Alpha-Beta-Loop (ABL) AHML_11335 PF00072 Response regulator receiver domain AHML_11350 PF02146 Sir2 family AHML_11360 PF00990 Diguanylate cyclase, GGDEF domain AHML_11360 PF17152 Periplasmic sensor domain AHML_11365 PF00356 Bacterial regulatory proteins, lacI family AHML_11370 PF00294 pfkB family carbohydrate kinase AHML_11375 PF13407 Periplasmic binding protein domain AHML_11380 PF02653 Branched-chain amino acid transport system / permease component AHML_11385 PF00005 ABC transporter AHML_11390 PF05025 RbsD / FucU transport protein family AHML_11395 PF14497 Glutathione S-transferase, C-terminal domain AHML_11395 PF02798 Glutathione S-transferase, N-terminal domain AHML_11410 PF01171 PP-loop family AHML_11415 PF00582 Universal stress protein family AHML_11420 PF00027 Cyclic nucleotide-binding domain AHML_11420 PF13545 Crp-like helix-turn-helix domain AHML_11435 PF00403 Heavy-metal-associated domain AHML_11445 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AHML_11445 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AHML_11460 PF00115 Cytochrome C and Quinol oxidase polypeptide I AHML_11470 PF13185 GAF domain AHML_11475 PF17516 ProQ C-terminal domain AHML_11475 PF04352 ProQ/FINO family AHML_11480 PF03572 Peptidase family S41 AHML_11480 PF17804 Tail specific protease N-terminal domain AHML_11480 PF11818 C-terminal domain of tail specific protease (DUF3340) AHML_11480 PF00595 PDZ domain AHML_11485 PF11940 Domain of unknown function (DUF3458) Ig-like fold AHML_11485 PF01433 Peptidase family M1 domain AHML_11485 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AHML_11495 PF05088 Bacterial NAD-glutamate dehydrogenase AHML_11500 PF01180 Dihydroorotate dehydrogenase AHML_11505 PF07126 Cell-division protein ZapC AHML_11510 PF10672 S-adenosylmethionine-dependent methyltransferase AHML_11510 PF01170 Putative RNA methylase family UPF0020 AHML_11510 PF02926 THUMP domain AHML_11520 PF16326 ABC transporter C-terminal domain AHML_11520 PF00005 ABC transporter AHML_11520 PF12848 ABC transporter AHML_11530 PF04957 Ribosome modulation factor AHML_11535 PF07977 FabA-like domain AHML_11540 PF13654 AAA domain AHML_11540 PF05362 Lon protease (S16) C-terminal proteolytic domain AHML_11550 PF07130 YebG protein AHML_11560 PF00106 short chain dehydrogenase AHML_11585 PF06974 Protein of unknown function (DUF1298) AHML_11585 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AHML_11600 PF03972 MmgE/PrpD family AHML_11605 PF00285 Citrate synthase, C-terminal domain AHML_11620 PF04403 Paraquat-inducible protein A AHML_11625 PF02470 MlaD protein AHML_11630 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AHML_11630 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AHML_11630 PF01189 16S rRNA methyltransferase RsmB/F AHML_11640 PF00589 Phage integrase family AHML_11645 PF01026 TatD related DNase AHML_11650 PF09115 DNA polymerase III, delta subunit, C terminal AHML_11655 PF02223 Thymidylate kinase AHML_11660 PF02618 YceG-like family AHML_11665 PF01063 Amino-transferase class IV AHML_11670 PF02801 Beta-ketoacyl synthase, C-terminal domain AHML_11670 PF00109 Beta-ketoacyl synthase, N-terminal domain AHML_11675 PF00550 Phosphopantetheine attachment site AHML_11685 PF00698 Acyl transferase domain AHML_11690 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AHML_11690 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AHML_11695 PF02504 Fatty acid synthesis protein AHML_11700 PF01783 Ribosomal L32p protein family AHML_11705 PF02620 Large ribosomal RNA subunit accumulation protein YceD AHML_11715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_11715 PF03466 LysR substrate binding domain AHML_11720 PF07690 Major Facilitator Superfamily AHML_11725 PF02545 Maf-like protein AHML_11740 PF00849 RNA pseudouridylate synthase AHML_11740 PF01479 S4 domain AHML_11745 PF12111 Polyribonucleotide phosphorylase C terminal AHML_11745 PF10150 Ribonuclease E/G family AHML_11745 PF00575 S1 RNA binding domain AHML_11750 PF01384 Phosphate transporter family AHML_11755 PF00692 dUTPase AHML_11760 PF00485 Phosphoribulokinase / Uridine kinase family AHML_11765 PF10609 NUBPL iron-transfer P-loop NTPase AHML_11770 PF01588 Putative tRNA binding domain AHML_11770 PF09334 tRNA synthetases class I (M) AHML_11770 PF08264 Anticodon-binding domain of tRNA AHML_11775 PF00043 Glutathione S-transferase, C-terminal domain AHML_11775 PF02798 Glutathione S-transferase, N-terminal domain AHML_11780 PF00708 Acylphosphatase AHML_11785 PF12729 Four helix bundle sensory module for signal transduction AHML_11785 PF00672 HAMP domain AHML_11785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_11790 PF17785 PUA-like domain AHML_11790 PF10672 S-adenosylmethionine-dependent methyltransferase AHML_11810 PF00586 AIR synthase related protein, N-terminal domain AHML_11810 PF02769 AIR synthase related protein, C-terminal domain AHML_11820 PF00753 Metallo-beta-lactamase superfamily AHML_11825 PF00072 Response regulator receiver domain AHML_11830 PF01627 Hpt domain AHML_11830 PF00512 His Kinase A (phospho-acceptor) domain AHML_11830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_11830 PF00672 HAMP domain AHML_11830 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHML_11830 PF00072 Response regulator receiver domain AHML_11835 PF01386 Ribosomal L25p family AHML_11845 PF00270 DEAD/DEAH box helicase AHML_11845 PF04408 Helicase associated domain (HA2) AHML_11845 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AHML_11845 PF00271 Helicase conserved C-terminal domain AHML_11845 PF11898 Domain of unknown function (DUF3418) AHML_11855 PF00072 Response regulator receiver domain AHML_11855 PF00196 Bacterial regulatory proteins, luxR family AHML_11865 PF02575 YbaB/EbfC DNA-binding family AHML_11870 PF12169 DNA polymerase III subunits gamma and tau domain III AHML_11870 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AHML_11870 PF12170 DNA polymerase III tau subunit V interacting with alpha AHML_11875 PF00156 Phosphoribosyl transferase domain AHML_11880 PF04304 Protein of unknown function (DUF454) AHML_11885 PF01207 Dihydrouridine synthase (Dus) AHML_11895 PF13408 Recombinase zinc beta ribbon domain AHML_11895 PF00239 Resolvase, N terminal domain AHML_11895 PF07508 Recombinase AHML_11905 PF02796 Helix-turn-helix domain of resolvase AHML_11905 PF00239 Resolvase, N terminal domain AHML_12005 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_12010 PF00570 HRDC domain AHML_12010 PF01612 3'-5' exonuclease AHML_12015 PF00501 AMP-binding enzyme AHML_12015 PF13193 AMP-binding enzyme C-terminal domain AHML_12020 PF08241 Methyltransferase domain AHML_12020 PF12697 Alpha/beta hydrolase family AHML_12030 PF00814 Glycoprotease family AHML_12035 PF04851 Type III restriction enzyme, res subunit AHML_12035 PF13307 Helicase C-terminal domain AHML_12045 PF08029 HisG, C-terminal domain AHML_12045 PF01634 ATP phosphoribosyltransferase AHML_12050 PF00815 Histidinol dehydrogenase AHML_12055 PF00155 Aminotransferase class I and II AHML_12060 PF00475 Imidazoleglycerol-phosphate dehydratase AHML_12060 PF08645 Polynucleotide kinase 3 phosphatase AHML_12065 PF00117 Glutamine amidotransferase class-I AHML_12070 PF00977 Histidine biosynthesis protein AHML_12075 PF00072 Response regulator receiver domain AHML_12085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_12085 PF01627 Hpt domain AHML_12085 PF00072 Response regulator receiver domain AHML_12085 PF00512 His Kinase A (phospho-acceptor) domain AHML_12090 PF00977 Histidine biosynthesis protein AHML_12095 PF01502 Phosphoribosyl-AMP cyclohydrolase AHML_12095 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AHML_12100 PF00501 AMP-binding enzyme AHML_12100 PF13193 AMP-binding enzyme C-terminal domain AHML_12105 PF03606 C4-dicarboxylate anaerobic carrier AHML_12115 PF05433 Glycine zipper 2TM domain AHML_12125 PF01799 [2Fe-2S] binding domain AHML_12125 PF00111 2Fe-2S iron-sulfur cluster binding domain AHML_12130 PF03450 CO dehydrogenase flavoprotein C-terminal domain AHML_12130 PF00941 FAD binding domain in molybdopterin dehydrogenase AHML_12135 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AHML_12135 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AHML_12140 PF00860 Permease family AHML_12145 PF01979 Amidohydrolase family AHML_12150 PF00860 Permease family AHML_12155 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AHML_12155 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AHML_12155 PF01799 [2Fe-2S] binding domain AHML_12160 PF00941 FAD binding domain in molybdopterin dehydrogenase AHML_12165 PF01979 Amidohydrolase family AHML_12170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AHML_12170 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_12175 PF12804 MobA-like NTP transferase domain AHML_12185 PF02625 XdhC and CoxI family AHML_12185 PF13478 XdhC Rossmann domain AHML_12190 PF00892 EamA-like transporter family AHML_12195 PF00696 Amino acid kinase family AHML_12200 PF01979 Amidohydrolase family AHML_12205 PF07687 Peptidase dimerisation domain AHML_12205 PF01546 Peptidase family M20/M25/M40 AHML_12210 PF00291 Pyridoxal-phosphate dependent enzyme AHML_12215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AHML_12215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AHML_12225 PF10123 Mu-like prophage I protein AHML_12240 PF06074 Protein of unknown function (DUF935) AHML_12250 PF07152 YaeQ protein AHML_12260 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AHML_12260 PF00378 Enoyl-CoA hydratase/isomerase AHML_12260 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AHML_12265 PF02803 Thiolase, C-terminal domain AHML_12265 PF00108 Thiolase, N-terminal domain AHML_12270 PF07726 ATPase family associated with various cellular activities (AAA) AHML_12270 PF17863 AAA lid domain AHML_12275 PF01882 Protein of unknown function DUF58 AHML_12300 PF04542 Sigma-70 region 2 AHML_12300 PF08281 Sigma-70, region 4 AHML_12310 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AHML_12325 PF00563 EAL domain AHML_12325 PF08668 HDOD domain AHML_12330 PF02803 Thiolase, C-terminal domain AHML_12330 PF00108 Thiolase, N-terminal domain AHML_12335 PF00376 MerR family regulatory protein AHML_12335 PF09278 MerR, DNA binding AHML_12340 PF00375 Sodium:dicarboxylate symporter family AHML_12345 PF06865 Pyrimidine/purine nucleoside phosphorylase AHML_12350 PF03313 Serine dehydratase alpha chain AHML_12350 PF03315 Serine dehydratase beta chain AHML_12355 PF03315 Serine dehydratase beta chain AHML_12355 PF03313 Serine dehydratase alpha chain AHML_12360 PF13406 Transglycosylase SLT domain AHML_12365 PF05166 YcgL domain AHML_12370 PF05209 Septum formation inhibitor MinC, N-terminal domain AHML_12370 PF03775 Septum formation inhibitor MinC, C-terminal domain AHML_12375 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AHML_12380 PF03776 Septum formation topological specificity factor MinE AHML_12385 PF04269 Protein of unknown function, DUF440 AHML_12390 PF00912 Transglycosylase AHML_12395 PF04269 Protein of unknown function, DUF440 AHML_12405 PF13509 S1 domain AHML_12405 PF17783 CvfB-like winged helix domain AHML_12430 PF02525 Flavodoxin-like fold AHML_12435 PF00892 EamA-like transporter family AHML_12440 PF01370 NAD dependent epimerase/dehydratase family AHML_12440 PF02222 ATP-grasp domain AHML_12445 PF13419 Haloacid dehalogenase-like hydrolase AHML_12455 PF00677 Lumazine binding domain AHML_12460 PF06786 Uncharacterised protein family (UPF0253) AHML_12465 PF01554 MatE AHML_12470 PF00136 DNA polymerase family B AHML_12470 PF03104 DNA polymerase family B, exonuclease domain AHML_12480 PF17151 Periplasmic sensor domain AHML_12480 PF00990 Diguanylate cyclase, GGDEF domain AHML_12495 PF03279 Bacterial lipid A biosynthesis acyltransferase AHML_12500 PF03279 Bacterial lipid A biosynthesis acyltransferase AHML_12510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_12510 PF03466 LysR substrate binding domain AHML_12515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AHML_12515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AHML_12520 PF01261 Xylose isomerase-like TIM barrel AHML_12525 PF03466 LysR substrate binding domain AHML_12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_12535 PF01966 HD domain AHML_12545 PF00990 Diguanylate cyclase, GGDEF domain AHML_12545 PF03707 Bacterial signalling protein N terminal repeat AHML_12545 PF00563 EAL domain AHML_12545 PF13188 PAS domain AHML_12550 PF00232 Glycosyl hydrolase family 1 AHML_12555 PF03466 LysR substrate binding domain AHML_12555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_12560 PF07694 5TMR of 5TMR-LYT AHML_12560 PF00990 Diguanylate cyclase, GGDEF domain AHML_12565 PF00248 Aldo/keto reductase family AHML_12575 PF00248 Aldo/keto reductase family AHML_12580 PF03466 LysR substrate binding domain AHML_12580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_12590 PF07676 WD40-like Beta Propeller Repeat AHML_12590 PF00326 Prolyl oligopeptidase family AHML_12590 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AHML_12595 PF12146 Serine aminopeptidase, S33 AHML_12600 PF03466 LysR substrate binding domain AHML_12600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_12610 PF00239 Resolvase, N terminal domain AHML_12610 PF02796 Helix-turn-helix domain of resolvase AHML_12620 PF04002 RadC-like JAB domain AHML_12630 PF00512 His Kinase A (phospho-acceptor) domain AHML_12630 PF09456 RcsC Alpha-Beta-Loop (ABL) AHML_12630 PF00072 Response regulator receiver domain AHML_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_12635 PF00563 EAL domain AHML_12635 PF00990 Diguanylate cyclase, GGDEF domain AHML_12635 PF08448 PAS fold AHML_12660 PF01925 Sulfite exporter TauE/SafE AHML_12665 PF13520 Amino acid permease AHML_12675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AHML_12675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AHML_12680 PF00378 Enoyl-CoA hydratase/isomerase AHML_12685 PF00378 Enoyl-CoA hydratase/isomerase AHML_12690 PF02770 Acyl-CoA dehydrogenase, middle domain AHML_12690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHML_12690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHML_12695 PF00171 Aldehyde dehydrogenase family AHML_12700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHML_12700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHML_12700 PF02770 Acyl-CoA dehydrogenase, middle domain AHML_12705 PF01039 Carboxyl transferase domain AHML_12710 PF00378 Enoyl-CoA hydratase/isomerase AHML_12715 PF00364 Biotin-requiring enzyme AHML_12715 PF00289 Biotin carboxylase, N-terminal domain AHML_12715 PF02785 Biotin carboxylase C-terminal domain AHML_12715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AHML_12720 PF00682 HMGL-like AHML_12725 PF09278 MerR, DNA binding AHML_12725 PF00376 MerR family regulatory protein AHML_12745 PF01184 GPR1/FUN34/yaaH family AHML_12750 PF06167 Glucose-regulated metallo-peptidase M90 AHML_12760 PF01235 Sodium:alanine symporter family AHML_12800 PF00378 Enoyl-CoA hydratase/isomerase AHML_12815 PF04341 Protein of unknown function, DUF485 AHML_12820 PF00474 Sodium:solute symporter family AHML_12825 PF00005 ABC transporter AHML_12825 PF12848 ABC transporter AHML_12830 PF13145 PPIC-type PPIASE domain AHML_12835 PF00216 Bacterial DNA-binding protein AHML_12840 PF05362 Lon protease (S16) C-terminal proteolytic domain AHML_12840 PF02190 ATP-dependent protease La (LON) substrate-binding domain AHML_12840 PF00004 ATPase family associated with various cellular activities (AAA) AHML_12845 PF10431 C-terminal, D2-small domain, of ClpB protein AHML_12845 PF07724 AAA domain (Cdc48 subfamily) AHML_12845 PF06689 ClpX C4-type zinc finger AHML_12850 PF00574 Clp protease AHML_12855 PF05698 Bacterial trigger factor protein (TF) C-terminus AHML_12855 PF05697 Bacterial trigger factor protein (TF) AHML_12855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHML_12870 PF12704 MacB-like periplasmic core domain AHML_12870 PF02687 FtsX-like permease family AHML_12875 PF00005 ABC transporter AHML_12880 PF12704 MacB-like periplasmic core domain AHML_12880 PF02687 FtsX-like permease family AHML_12890 PF03461 TRCF domain AHML_12890 PF17757 UvrB interaction domain AHML_12890 PF00270 DEAD/DEAH box helicase AHML_12890 PF00271 Helicase conserved C-terminal domain AHML_12890 PF02559 CarD-like/TRCF domain AHML_12895 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AHML_12900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_12905 PF00892 EamA-like transporter family AHML_12915 PF00300 Histidine phosphatase superfamily (branch 1) AHML_12920 PF05193 Peptidase M16 inactive domain AHML_12920 PF00675 Insulinase (Peptidase family M16) AHML_12925 PF05724 Thiopurine S-methyltransferase (TPMT) AHML_12940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AHML_12940 PF12833 Helix-turn-helix domain AHML_12940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AHML_12940 PF02805 Metal binding domain of Ada AHML_12990 PF13356 Arm DNA-binding domain AHML_12990 PF00589 Phage integrase family AHML_12995 PF00117 Glutamine amidotransferase class-I AHML_12995 PF00958 GMP synthase C terminal domain AHML_12995 PF02540 NAD synthase AHML_13000 PF00571 CBS domain AHML_13000 PF00478 IMP dehydrogenase / GMP reductase domain AHML_13005 PF02705 K+ potassium transporter AHML_13015 PF01618 MotA/TolQ/ExbB proton channel family AHML_13020 PF02472 Biopolymer transport protein ExbD/TolR AHML_13025 PF00892 EamA-like transporter family AHML_13030 PF02601 Exonuclease VII, large subunit AHML_13030 PF13742 OB-fold nucleic acid binding domain AHML_13035 PF04055 Radical SAM superfamily AHML_13040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_13040 PF00672 HAMP domain AHML_13045 PF00793 DAHP synthetase I family AHML_13050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AHML_13055 PF00266 Aminotransferase class-V AHML_13060 PF01012 Electron transfer flavoprotein domain AHML_13060 PF00766 Electron transfer flavoprotein FAD-binding domain AHML_13065 PF01012 Electron transfer flavoprotein domain AHML_13075 PF01544 CorA-like Mg2+ transporter protein AHML_13080 PF11143 Protein of unknown function (DUF2919) AHML_13095 PF07715 TonB-dependent Receptor Plug Domain AHML_13095 PF00593 TonB dependent receptor AHML_13100 PF01032 FecCD transport family AHML_13105 PF01032 FecCD transport family AHML_13110 PF00005 ABC transporter AHML_13115 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AHML_13115 PF01648 4'-phosphopantetheinyl transferase superfamily AHML_13120 PF01497 Periplasmic binding protein AHML_13125 PF13193 AMP-binding enzyme C-terminal domain AHML_13125 PF00501 AMP-binding enzyme AHML_13125 PF00975 Thioesterase domain AHML_13125 PF00668 Condensation domain AHML_13125 PF00550 Phosphopantetheine attachment site AHML_13130 PF00668 Condensation domain AHML_13130 PF13193 AMP-binding enzyme C-terminal domain AHML_13130 PF00501 AMP-binding enzyme AHML_13130 PF07993 Male sterility protein AHML_13130 PF00550 Phosphopantetheine attachment site AHML_13140 PF00668 Condensation domain AHML_13140 PF13193 AMP-binding enzyme C-terminal domain AHML_13140 PF00501 AMP-binding enzyme AHML_13140 PF00975 Thioesterase domain AHML_13140 PF00550 Phosphopantetheine attachment site AHML_13145 PF00857 Isochorismatase family AHML_13145 PF00550 Phosphopantetheine attachment site AHML_13150 PF13193 AMP-binding enzyme C-terminal domain AHML_13150 PF00501 AMP-binding enzyme AHML_13155 PF00425 chorismate binding enzyme AHML_13160 PF07273 Protein of unknown function (DUF1439) AHML_13170 PF00483 Nucleotidyl transferase AHML_13195 PF00294 pfkB family carbohydrate kinase AHML_13205 PF00762 Ferrochelatase AHML_13210 PF05191 Adenylate kinase, active site lid AHML_13215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_13215 PF00183 Hsp90 protein AHML_13220 PF13662 Toprim domain AHML_13220 PF02132 RecR protein AHML_13225 PF02634 FdhD/NarQ family AHML_13230 PF00158 Sigma-54 interaction domain AHML_13230 PF02954 Bacterial regulatory protein, Fis family AHML_13230 PF01590 GAF domain AHML_13240 PF01568 Molydopterin dinucleotide binding domain AHML_13240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHML_13240 PF00384 Molybdopterin oxidoreductase AHML_13245 PF01568 Molydopterin dinucleotide binding domain AHML_13245 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHML_13245 PF00384 Molybdopterin oxidoreductase AHML_13250 PF12800 4Fe-4S binding domain AHML_13250 PF13247 4Fe-4S dicluster domain AHML_13260 PF02705 K+ potassium transporter AHML_13265 PF12798 4Fe-4S binding domain AHML_13265 PF00037 4Fe-4S binding domain AHML_13270 PF00361 Proton-conducting membrane transporter AHML_13275 PF00146 NADH dehydrogenase AHML_13280 PF00374 Nickel-dependent hydrogenase AHML_13280 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AHML_13280 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AHML_13285 PF12838 4Fe-4S dicluster domain AHML_13290 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AHML_13295 PF07450 Formate hydrogenlyase maturation protein HycH AHML_13300 PF01750 Hydrogenase maturation protease AHML_13305 PF12390 Selenocysteine synthase N terminal AHML_13305 PF03841 L-seryl-tRNA selenium transferase AHML_13310 PF09107 Elongation factor SelB, winged helix AHML_13310 PF00009 Elongation factor Tu GTP binding domain AHML_13310 PF03144 Elongation factor Tu domain 2 AHML_13310 PF09106 Elongation factor SelB, winged helix AHML_13310 PF09105 Elongation factor SelB, winged helix AHML_13315 PF17788 HypF Kae1-like domain AHML_13315 PF01300 Telomere recombination AHML_13315 PF00708 Acylphosphatase AHML_13315 PF07503 HypF finger AHML_13320 PF01455 HupF/HypC family AHML_13325 PF01924 Hydrogenase formation hypA family AHML_13330 PF02769 AIR synthase related protein, C-terminal domain AHML_13330 PF00586 AIR synthase related protein, N-terminal domain AHML_13335 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AHML_13345 PF02492 CobW/HypB/UreG, nucleotide-binding domain AHML_13350 PF00005 ABC transporter AHML_13355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_13355 PF00005 ABC transporter AHML_13360 PF12911 N-terminal TM domain of oligopeptide transport permease C AHML_13360 PF00528 Binding-protein-dependent transport system inner membrane component AHML_13365 PF00528 Binding-protein-dependent transport system inner membrane component AHML_13370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_13375 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE AHML_13380 PF01750 Hydrogenase maturation protease AHML_13385 PF00374 Nickel-dependent hydrogenase AHML_13390 PF03916 Polysulphide reductase, NrfD AHML_13395 PF13247 4Fe-4S dicluster domain AHML_13400 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AHML_13400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AHML_13405 PF00072 Response regulator receiver domain AHML_13415 PF09078 CheY binding AHML_13415 PF02895 Signal transducing histidine kinase, homodimeric domain AHML_13415 PF01584 CheW-like domain AHML_13415 PF01627 Hpt domain AHML_13415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_13420 PF17202 Single cache domain 3 AHML_13420 PF00672 HAMP domain AHML_13420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_13425 PF01584 CheW-like domain AHML_13430 PF03705 CheR methyltransferase, all-alpha domain AHML_13430 PF01739 CheR methyltransferase, SAM binding domain AHML_13435 PF01339 CheB methylesterase AHML_13435 PF00072 Response regulator receiver domain AHML_13440 PF00990 Diguanylate cyclase, GGDEF domain AHML_13440 PF03707 Bacterial signalling protein N terminal repeat AHML_13440 PF00563 EAL domain AHML_13445 PF12729 Four helix bundle sensory module for signal transduction AHML_13445 PF00672 HAMP domain AHML_13445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_13450 PF01168 Alanine racemase, N-terminal domain AHML_13450 PF00842 Alanine racemase, C-terminal domain AHML_13465 PF13276 HTH-like domain AHML_13465 PF13333 Integrase core domain AHML_13465 PF00665 Integrase core domain AHML_13475 PF01527 Transposase AHML_13485 PF01527 Transposase AHML_13490 PF07715 TonB-dependent Receptor Plug Domain AHML_13490 PF00593 TonB dependent receptor AHML_13520 PF00916 Sulfate permease family AHML_13520 PF01740 STAS domain AHML_13525 PF03350 Uncharacterized protein family, UPF0114 AHML_13540 PF03239 Iron permease FTR1 family AHML_13545 PF01593 Flavin containing amine oxidoreductase AHML_13560 PF07690 Major Facilitator Superfamily AHML_13570 PF00005 ABC transporter AHML_13585 PF02913 FAD linked oxidases, C-terminal domain AHML_13585 PF01565 FAD binding domain AHML_13590 PF02589 LUD domain AHML_13595 PF02589 LUD domain AHML_13595 PF13183 4Fe-4S dicluster domain AHML_13595 PF11870 Domain of unknown function (DUF3390) AHML_13600 PF02754 Cysteine-rich domain AHML_13605 PF02652 L-lactate permease AHML_13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_13610 PF03466 LysR substrate binding domain AHML_13620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHML_13625 PF00561 alpha/beta hydrolase fold AHML_13650 PF01625 Peptide methionine sulfoxide reductase AHML_13655 PF00583 Acetyltransferase (GNAT) family AHML_13655 PF00696 Amino acid kinase family AHML_13660 PF00696 Amino acid kinase family AHML_13660 PF01842 ACT domain AHML_13670 PF00884 Sulfatase AHML_13675 PF02016 LD-carboxypeptidase N-terminal domain AHML_13675 PF17676 LD-carboxypeptidase C-terminal domain AHML_13680 PF01734 Patatin-like phospholipase AHML_13685 PF17179 4Fe-4S dicluster domain AHML_13690 PF00175 Oxidoreductase NAD-binding domain AHML_13690 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AHML_13695 PF13187 4Fe-4S dicluster domain AHML_13695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHML_13695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHML_13700 PF14824 Sirohaem biosynthesis protein central AHML_13700 PF10414 Sirohaem synthase dimerisation region AHML_13700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHML_13710 PF01906 Putative heavy-metal-binding AHML_13730 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_13735 PF05728 Uncharacterised protein family (UPF0227) AHML_13740 PF00860 Permease family AHML_13745 PF08439 Oligopeptidase F AHML_13745 PF01432 Peptidase family M3 AHML_13750 PF01432 Peptidase family M3 AHML_13750 PF08439 Oligopeptidase F AHML_13755 PF05661 Protein of unknown function (DUF808) AHML_13765 PF07549 SecD/SecF GG Motif AHML_13765 PF02355 Protein export membrane protein AHML_13770 PF07549 SecD/SecF GG Motif AHML_13770 PF02355 Protein export membrane protein AHML_13770 PF13721 SecD export protein N-terminal TM region AHML_13805 PF01230 HIT domain AHML_13810 PF00672 HAMP domain AHML_13810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_13820 PF01979 Amidohydrolase family AHML_13830 PF00375 Sodium:dicarboxylate symporter family AHML_13840 PF01168 Alanine racemase, N-terminal domain AHML_13840 PF00842 Alanine racemase, C-terminal domain AHML_13845 PF03741 Integral membrane protein TerC family AHML_13850 PF00005 ABC transporter AHML_13850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_13860 PF00005 ABC transporter AHML_13860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_13865 PF12911 N-terminal TM domain of oligopeptide transport permease C AHML_13865 PF00528 Binding-protein-dependent transport system inner membrane component AHML_13870 PF00528 Binding-protein-dependent transport system inner membrane component AHML_13875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_13880 PF01914 MarC family integral membrane protein AHML_13890 PF00465 Iron-containing alcohol dehydrogenase AHML_13890 PF00171 Aldehyde dehydrogenase family AHML_13895 PF01966 HD domain AHML_13900 PF06580 Histidine kinase AHML_13900 PF07694 5TMR of 5TMR-LYT AHML_13905 PF04397 LytTr DNA-binding domain AHML_13905 PF00072 Response regulator receiver domain AHML_13910 PF02554 Carbon starvation protein CstA AHML_13915 PF11742 Protein of unknown function (DUF3302) AHML_13920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_13920 PF00529 HlyD membrane-fusion protein of T1SS AHML_13925 PF04851 Type III restriction enzyme, res subunit AHML_13925 PF00271 Helicase conserved C-terminal domain AHML_13930 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AHML_13935 PF00462 Glutaredoxin AHML_13945 PF00155 Aminotransferase class I and II AHML_13950 PF03606 C4-dicarboxylate anaerobic carrier AHML_13955 PF07055 Enoyl reductase FAD binding domain AHML_13955 PF12241 Trans-2-enoyl-CoA reductase catalytic region AHML_13955 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AHML_13960 PF08447 PAS fold AHML_13960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_13960 PF13426 PAS domain AHML_13970 PF00892 EamA-like transporter family AHML_13975 PF02508 Rnf-Nqr subunit, membrane protein AHML_13980 PF04060 Putative Fe-S cluster AHML_13985 PF10531 SLBB domain AHML_13985 PF13375 RnfC Barrel sandwich hybrid domain AHML_13985 PF12838 4Fe-4S dicluster domain AHML_13985 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AHML_13990 PF03116 NQR2, RnfD, RnfE family AHML_13995 PF04205 FMN-binding domain AHML_14000 PF02508 Rnf-Nqr subunit, membrane protein AHML_14005 PF00730 HhH-GPD superfamily base excision DNA repair protein AHML_14005 PF00633 Helix-hairpin-helix motif AHML_14005 PF10576 Iron-sulfur binding domain of endonuclease III AHML_14010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHML_14015 PF00691 OmpA family AHML_14015 PF18393 MotY N-terminal domain AHML_14020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_14020 PF00672 HAMP domain AHML_14020 PF12729 Four helix bundle sensory module for signal transduction AHML_14025 PF00929 Exonuclease AHML_14030 PF13726 Na+-H+ antiporter family AHML_14030 PF03553 Na+/H+ antiporter family AHML_14035 PF03880 DbpA RNA binding domain AHML_14035 PF00270 DEAD/DEAH box helicase AHML_14035 PF00271 Helicase conserved C-terminal domain AHML_14040 PF03061 Thioesterase superfamily AHML_14050 PF01565 FAD binding domain AHML_14050 PF13183 4Fe-4S dicluster domain AHML_14050 PF02913 FAD linked oxidases, C-terminal domain AHML_14060 PF03471 Transporter associated domain AHML_14060 PF03741 Integral membrane protein TerC family AHML_14065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AHML_14070 PF00962 Adenosine/AMP deaminase AHML_14075 PF13344 Haloacid dehalogenase-like hydrolase AHML_14080 PF00999 Sodium/hydrogen exchanger family AHML_14080 PF02254 TrkA-N domain AHML_14090 PF00733 Asparagine synthase AHML_14090 PF13537 Glutamine amidotransferase domain AHML_14100 PF00043 Glutathione S-transferase, C-terminal domain AHML_14100 PF13417 Glutathione S-transferase, N-terminal domain AHML_14105 PF14497 Glutathione S-transferase, C-terminal domain AHML_14105 PF02798 Glutathione S-transferase, N-terminal domain AHML_14115 PF04209 homogentisate 1,2-dioxygenase AHML_14120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHML_14130 PF00849 RNA pseudouridylate synthase AHML_14135 PF00563 EAL domain AHML_14135 PF13426 PAS domain AHML_14135 PF00990 Diguanylate cyclase, GGDEF domain AHML_14140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_14140 PF08447 PAS fold AHML_14150 PF09924 Uncharacterised conserved protein (DUF2156) AHML_14150 PF03706 Lysylphosphatidylglycerol synthase TM region AHML_14160 PF08019 Phosphoethanolamine transferase EptA/EptB AHML_14160 PF00884 Sulfatase AHML_14175 PF01027 Inhibitor of apoptosis-promoting Bax1 AHML_14180 PF12805 FUSC-like inner membrane protein yccS AHML_14185 PF04358 DsrC like protein AHML_14190 PF05036 Sporulation related domain AHML_14195 PF02875 Mur ligase family, glutamate ligase domain AHML_14195 PF08245 Mur ligase middle domain AHML_14200 PF01039 Carboxyl transferase domain AHML_14200 PF17848 Acetyl-coA carboxylase zinc finger domain AHML_14205 PF01416 tRNA pseudouridine synthase AHML_14215 PF02774 Semialdehyde dehydrogenase, dimerisation domain AHML_14215 PF01118 Semialdehyde dehydrogenase, NAD binding domain AHML_14220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHML_14220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHML_14220 PF11890 Domain of unknown function (DUF3410) AHML_14225 PF01569 PAP2 superfamily AHML_14230 PF03180 NLPA lipoprotein AHML_14235 PF07969 Amidohydrolase family AHML_14245 PF01292 Prokaryotic cytochrome b561 AHML_14260 PF00082 Subtilase family AHML_14260 PF01483 Proprotein convertase P-domain AHML_14270 PF01915 Glycosyl hydrolase family 3 C-terminal domain AHML_14270 PF00933 Glycosyl hydrolase family 3 N terminal domain AHML_14270 PF14310 Fibronectin type III-like domain AHML_14280 PF00391 PEP-utilising enzyme, mobile domain AHML_14280 PF02896 PEP-utilising enzyme, TIM barrel domain AHML_14280 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AHML_14285 PF03618 Kinase/pyrophosphorylase AHML_14295 PF00324 Amino acid permease AHML_14345 PF00005 ABC transporter AHML_14345 PF00664 ABC transporter transmembrane region AHML_14345 PF03412 Peptidase C39 family AHML_14350 PF04055 Radical SAM superfamily AHML_14350 PF16199 Radical_SAM C-terminal domain AHML_14355 PF04898 Glutamate synthase central domain AHML_14355 PF01645 Conserved region in glutamate synthase AHML_14355 PF00310 Glutamine amidotransferases class-II AHML_14355 PF01493 GXGXG motif AHML_14360 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_14360 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AHML_14370 PF00528 Binding-protein-dependent transport system inner membrane component AHML_14375 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_14390 PF00376 MerR family regulatory protein AHML_14390 PF09278 MerR, DNA binding AHML_14405 PF14521 Lysine-specific metallo-endopeptidase AHML_14415 PF00271 Helicase conserved C-terminal domain AHML_14415 PF00270 DEAD/DEAH box helicase AHML_14420 PF13302 Acetyltransferase (GNAT) domain AHML_14445 PF07759 Protein of unknown function (DUF1615) AHML_14450 PF00682 HMGL-like AHML_14450 PF08502 LeuA allosteric (dimerisation) domain AHML_14455 PF02142 MGS-like domain AHML_14455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AHML_14455 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AHML_14460 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AHML_14460 PF00117 Glutamine amidotransferase class-I AHML_14465 PF05173 Dihydrodipicolinate reductase, C-terminus AHML_14465 PF01113 Dihydrodipicolinate reductase, N-terminus AHML_14475 PF01812 5-formyltetrahydrofolate cyclo-ligase family AHML_14480 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AHML_14485 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AHML_14490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHML_14490 PF01842 ACT domain AHML_14490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHML_14495 PF01219 Prokaryotic diacylglycerol kinase AHML_14500 PF00793 DAHP synthetase I family AHML_14505 PF00583 Acetyltransferase (GNAT) family AHML_14510 PF00005 ABC transporter AHML_14515 PF01032 FecCD transport family AHML_14520 PF01627 Hpt domain AHML_14520 PF00072 Response regulator receiver domain AHML_14520 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_14520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_14520 PF00989 PAS fold AHML_14520 PF00512 His Kinase A (phospho-acceptor) domain AHML_14530 PF00437 Type II/IV secretion system protein AHML_14535 PF00483 Nucleotidyl transferase AHML_14550 PF02421 Ferrous iron transport protein B AHML_14550 PF07670 Nucleoside recognition AHML_14550 PF07664 Ferrous iron transport protein B C terminus AHML_14560 PF01253 Translation initiation factor SUI1 AHML_14565 PF01169 Uncharacterized protein family UPF0016 AHML_14595 PF00990 Diguanylate cyclase, GGDEF domain AHML_14595 PF13185 GAF domain AHML_14610 PF01406 tRNA synthetases class I (C) catalytic domain AHML_14610 PF09190 DALR domain AHML_14615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AHML_14625 PF00149 Calcineurin-like phosphoesterase AHML_14630 PF03916 Polysulphide reductase, NrfD AHML_14635 PF13247 4Fe-4S dicluster domain AHML_14635 PF00037 4Fe-4S binding domain AHML_14655 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AHML_14660 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB AHML_14670 PF01757 Acyltransferase family AHML_14710 PF00665 Integrase core domain AHML_14710 PF13276 HTH-like domain AHML_14720 PF01527 Transposase AHML_14725 PF05598 Transposase domain (DUF772) AHML_14725 PF01609 Transposase DDE domain AHML_14730 PF04962 KduI/IolB family AHML_14735 PF01261 Xylose isomerase-like TIM barrel AHML_14740 PF00294 pfkB family carbohydrate kinase AHML_14745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AHML_14745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AHML_14750 PF02653 Branched-chain amino acid transport system / permease component AHML_14755 PF00005 ABC transporter AHML_14760 PF13407 Periplasmic binding protein domain AHML_14765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AHML_14765 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AHML_14775 PF13333 Integrase core domain AHML_14775 PF13276 HTH-like domain AHML_14775 PF00665 Integrase core domain AHML_14780 PF00205 Thiamine pyrophosphate enzyme, central domain AHML_14780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHML_14780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHML_14790 PF00171 Aldehyde dehydrogenase family AHML_14800 PF13817 IS66 C-terminal element AHML_14800 PF13007 Transposase C of IS166 homeodomain AHML_14800 PF13005 zinc-finger binding domain of transposase IS66 AHML_14800 PF03050 Transposase IS66 family AHML_14825 PF13356 Arm DNA-binding domain AHML_14825 PF00589 Phage integrase family AHML_14830 PF01066 CDP-alcohol phosphatidyltransferase AHML_14835 PF08459 UvrC Helix-hairpin-helix N-terminal AHML_14835 PF02151 UvrB/uvrC motif AHML_14835 PF01541 GIY-YIG catalytic domain AHML_14840 PF00072 Response regulator receiver domain AHML_14840 PF00196 Bacterial regulatory proteins, luxR family AHML_14845 PF02348 Cytidylyltransferase AHML_14850 PF03966 Trm112p-like protein AHML_14855 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AHML_14860 PF00664 ABC transporter transmembrane region AHML_14860 PF00005 ABC transporter AHML_14865 PF03772 Competence protein AHML_14865 PF00753 Metallo-beta-lactamase superfamily AHML_14900 PF00816 H-NS histone family AHML_14935 PF01037 Lrp/AsnC ligand binding domain AHML_14945 PF00701 Dihydrodipicolinate synthetase family AHML_14950 PF00155 Aminotransferase class I and II AHML_14950 PF00392 Bacterial regulatory proteins, gntR family AHML_15010 PF05872 Bacterial protein of unknown function (DUF853) AHML_15015 PF00155 Aminotransferase class I and II AHML_15030 PF13307 Helicase C-terminal domain AHML_15030 PF06733 DEAD_2 AHML_15040 PF00850 Histone deacetylase domain AHML_15045 PF07690 Major Facilitator Superfamily AHML_15050 PF01926 50S ribosome-binding GTPase AHML_15055 PF00245 Alkaline phosphatase AHML_15060 PF00245 Alkaline phosphatase AHML_15080 PF14760 Rnk N-terminus AHML_15080 PF01272 Transcription elongation factor, GreA/GreB, C-term AHML_15085 PF00072 Response regulator receiver domain AHML_15085 PF00196 Bacterial regulatory proteins, luxR family AHML_15090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_15090 PF05231 MASE1 AHML_15090 PF07730 Histidine kinase AHML_15095 PF07690 Major Facilitator Superfamily AHML_15100 PF08448 PAS fold AHML_15100 PF00990 Diguanylate cyclase, GGDEF domain AHML_15105 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_15110 PF00528 Binding-protein-dependent transport system inner membrane component AHML_15115 PF00005 ABC transporter AHML_15125 PF04116 Fatty acid hydroxylase superfamily AHML_15130 PF13520 Amino acid permease AHML_15135 PF02310 B12 binding domain AHML_15135 PF02607 B12 binding domain AHML_15135 PF00809 Pterin binding enzyme AHML_15135 PF02574 Homocysteine S-methyltransferase AHML_15135 PF02965 Vitamin B12 dependent methionine synthase, activation domain AHML_15145 PF03471 Transporter associated domain AHML_15145 PF00571 CBS domain AHML_15145 PF01595 Cyclin M transmembrane N-terminal domain AHML_15150 PF01895 PhoU domain AHML_15160 PF00528 Binding-protein-dependent transport system inner membrane component AHML_15165 PF00528 Binding-protein-dependent transport system inner membrane component AHML_15170 PF14437 MafB19-like deaminase AHML_15175 PF01274 Malate synthase AHML_15180 PF00463 Isocitrate lyase family AHML_15185 PF00308 Bacterial dnaA protein AHML_15200 PF02769 AIR synthase related protein, C-terminal domain AHML_15200 PF00586 AIR synthase related protein, N-terminal domain AHML_15205 PF00551 Formyl transferase AHML_15210 PF01784 NIF3 (NGG1p interacting factor 3) AHML_15215 PF00158 Sigma-54 interaction domain AHML_15215 PF02954 Bacterial regulatory protein, Fis family AHML_15220 PF00989 PAS fold AHML_15220 PF00512 His Kinase A (phospho-acceptor) domain AHML_15220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_15225 PF00072 Response regulator receiver domain AHML_15225 PF00158 Sigma-54 interaction domain AHML_15225 PF02954 Bacterial regulatory protein, Fis family AHML_15235 PF01842 ACT domain AHML_15240 PF13089 Polyphosphate kinase N-terminal domain AHML_15240 PF17941 Polyphosphate kinase C-terminal domain 1 AHML_15240 PF13090 Polyphosphate kinase C-terminal domain 2 AHML_15240 PF02503 Polyphosphate kinase middle domain AHML_15245 PF02541 Ppx/GppA phosphatase family AHML_15250 PF00571 CBS domain AHML_15250 PF03448 MgtE intracellular N domain AHML_15250 PF01769 Divalent cation transporter AHML_15255 PF00669 Bacterial flagellin N-terminal helical region AHML_15260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHML_15260 PF00460 Flagella basal body rod protein AHML_15265 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AHML_15265 PF10135 Rod binding protein AHML_15270 PF02119 Flagellar P-ring protein AHML_15275 PF02107 Flagellar L-ring protein AHML_15280 PF00460 Flagella basal body rod protein AHML_15280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHML_15285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHML_15285 PF00460 Flagella basal body rod protein AHML_15290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHML_15290 PF07559 Flagellar basal body protein FlaE AHML_15290 PF00460 Flagella basal body rod protein AHML_15300 PF00460 Flagella basal body rod protein AHML_15300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHML_15305 PF00460 Flagella basal body rod protein AHML_15310 PF01739 CheR methyltransferase, SAM binding domain AHML_15310 PF03705 CheR methyltransferase, all-alpha domain AHML_15315 PF00072 Response regulator receiver domain AHML_15315 PF01584 CheW-like domain AHML_15320 PF13144 Chaperone for flagella basal body P-ring formation AHML_15335 PF12850 Calcineurin-like phosphoesterase superfamily domain AHML_15340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_15350 PF00849 RNA pseudouridylate synthase AHML_15350 PF01479 S4 domain AHML_15355 PF01966 HD domain AHML_15355 PF11871 Domain of unknown function (DUF3391) AHML_15365 PF00923 Transaldolase/Fructose-6-phosphate aldolase AHML_15370 PF04055 Radical SAM superfamily AHML_15380 PF08220 DeoR-like helix-turn-helix domain AHML_15380 PF00455 DeoR C terminal sensor domain AHML_15385 PF00892 EamA-like transporter family AHML_15390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_15415 PF00313 'Cold-shock' DNA-binding domain AHML_15420 PF02817 e3 binding domain AHML_15420 PF00364 Biotin-requiring enzyme AHML_15420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AHML_15425 PF02780 Transketolase, C-terminal domain AHML_15425 PF02779 Transketolase, pyrimidine binding domain AHML_15430 PF00676 Dehydrogenase E1 component AHML_15435 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AHML_15445 PF05472 DNA replication terminus site-binding protein (Ter protein) AHML_15450 PF04434 SWIM zinc finger AHML_15450 PF00176 SNF2 family N-terminal domain AHML_15450 PF00271 Helicase conserved C-terminal domain AHML_15455 PF04337 Protein of unknown function, DUF480 AHML_15465 PF06082 Exopolysaccharide biosynthesis protein YbjH AHML_15495 PF02706 Chain length determinant protein AHML_15500 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AHML_15505 PF00483 Nucleotidyl transferase AHML_15510 PF04321 RmlD substrate binding domain AHML_15515 PF00953 Glycosyl transferase family 4 AHML_15520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AHML_15520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AHML_15520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AHML_15520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AHML_15525 PF00535 Glycosyl transferase family 2 AHML_15530 PF01050 Mannose-6-phosphate isomerase AHML_15530 PF00483 Nucleotidyl transferase AHML_15535 PF00293 NUDIX domain AHML_15540 PF01370 NAD dependent epimerase/dehydratase family AHML_15545 PF16363 GDP-mannose 4,6 dehydratase AHML_15550 PF00534 Glycosyl transferases group 1 AHML_15550 PF13439 Glycosyltransferase Family 4 AHML_15565 PF12464 Maltose acetyltransferase AHML_15565 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_15570 PF01943 Polysaccharide biosynthesis protein AHML_15575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AHML_15580 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_15580 PF14602 Hexapeptide repeat of succinyl-transferase AHML_15580 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AHML_15585 PF05523 WxcM-like, C-terminal AHML_15590 PF00483 Nucleotidyl transferase AHML_15595 PF16363 GDP-mannose 4,6 dehydratase AHML_15600 PF00873 AcrB/AcrD/AcrF family AHML_15605 PF00529 HlyD membrane-fusion protein of T1SS AHML_15605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_15610 PF00440 Bacterial regulatory proteins, tetR family AHML_15610 PF08361 MAATS-type transcriptional repressor, C-terminal region AHML_15630 PF01479 S4 domain AHML_15630 PF00849 RNA pseudouridylate synthase AHML_15635 PF04079 Segregation and condensation complex subunit ScpB AHML_15640 PF02616 Segregation and condensation protein ScpA AHML_15645 PF01300 Telomere recombination AHML_15650 PF02811 PHP domain AHML_15655 PF00425 chorismate binding enzyme AHML_15655 PF04715 Anthranilate synthase component I, N terminal region AHML_15660 PF02885 Glycosyl transferase family, helical bundle domain AHML_15660 PF00117 Glutamine amidotransferase class-I AHML_15660 PF00591 Glycosyl transferase family, a/b domain AHML_15665 PF02885 Glycosyl transferase family, helical bundle domain AHML_15665 PF00591 Glycosyl transferase family, a/b domain AHML_15670 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AHML_15670 PF00218 Indole-3-glycerol phosphate synthase AHML_15675 PF00291 Pyridoxal-phosphate dependent enzyme AHML_15680 PF00290 Tryptophan synthase alpha chain AHML_15715 PF01773 Na+ dependent nucleoside transporter N-terminus AHML_15715 PF07670 Nucleoside recognition AHML_15715 PF07662 Na+ dependent nucleoside transporter C-terminus AHML_15735 PF05930 Prophage CP4-57 regulatory protein (AlpA) AHML_15750 PF00857 Isochorismatase family AHML_15755 PF00549 CoA-ligase AHML_15755 PF02629 CoA binding domain AHML_15760 PF06545 Protein of unknown function (DUF1116) AHML_15765 PF00696 Amino acid kinase family AHML_15780 PF03466 LysR substrate binding domain AHML_15780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_15820 PF04002 RadC-like JAB domain AHML_15855 PF02613 Nitrate reductase delta subunit AHML_15860 PF00384 Molybdopterin oxidoreductase AHML_15860 PF18364 Molybdopterin oxidoreductase N-terminal domain AHML_15860 PF01568 Molydopterin dinucleotide binding domain AHML_15865 PF03264 NapC/NirT cytochrome c family, N-terminal region AHML_15870 PF00486 Transcriptional regulatory protein, C terminal AHML_15870 PF00072 Response regulator receiver domain AHML_15880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHML_15885 PF00512 His Kinase A (phospho-acceptor) domain AHML_15885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_15885 PF00672 HAMP domain AHML_15885 PF01627 Hpt domain AHML_15885 PF00072 Response regulator receiver domain AHML_15890 PF07690 Major Facilitator Superfamily AHML_15895 PF01040 UbiA prenyltransferase family AHML_15900 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AHML_15905 PF00510 Cytochrome c oxidase subunit III AHML_15910 PF00115 Cytochrome C and Quinol oxidase polypeptide I AHML_15915 PF06481 COX Aromatic Rich Motif AHML_15915 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AHML_15925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AHML_15925 PF00034 Cytochrome c AHML_15935 PF01156 Inosine-uridine preferring nucleoside hydrolase AHML_15950 PF00127 Copper binding proteins, plastocyanin/azurin family AHML_15955 PF02424 ApbE family AHML_15960 PF07690 Major Facilitator Superfamily AHML_15975 PF03372 Endonuclease/Exonuclease/phosphatase family AHML_15980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_15985 PF00873 AcrB/AcrD/AcrF family AHML_15995 PF00529 HlyD membrane-fusion protein of T1SS AHML_15995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_16000 PF00873 AcrB/AcrD/AcrF family AHML_16020 PF03099 Biotin/lipoate A/B protein ligase family AHML_16020 PF10437 Bacterial lipoate protein ligase C-terminus AHML_16025 PF00990 Diguanylate cyclase, GGDEF domain AHML_16025 PF03707 Bacterial signalling protein N terminal repeat AHML_16025 PF00563 EAL domain AHML_16030 PF00873 AcrB/AcrD/AcrF family AHML_16045 PF04143 Sulphur transport AHML_16050 PF01022 Bacterial regulatory protein, arsR family AHML_16065 PF02308 MgtC family AHML_16070 PF00356 Bacterial regulatory proteins, lacI family AHML_16070 PF13407 Periplasmic binding protein domain AHML_16075 PF08244 Glycosyl hydrolases family 32 C terminal AHML_16075 PF00251 Glycosyl hydrolases family 32 N-terminal domain AHML_16080 PF02378 Phosphotransferase system, EIIC AHML_16080 PF00367 phosphotransferase system, EIIB AHML_16085 PF00294 pfkB family carbohydrate kinase AHML_16090 PF11471 Maltoporin periplasmic N-terminal extension AHML_16090 PF02264 LamB porin AHML_16095 PF00226 DnaJ domain AHML_16095 PF01556 DnaJ C terminal domain AHML_16095 PF00684 DnaJ central domain AHML_16100 PF00012 Hsp70 protein AHML_16105 PF01025 GrpE AHML_16110 PF01513 ATP-NAD kinase AHML_16115 PF02463 RecF/RecN/SMC N terminal domain AHML_16125 PF01368 DHH family AHML_16125 PF02833 DHHA2 domain AHML_16135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_16140 PF02687 FtsX-like permease family AHML_16140 PF00005 ABC transporter AHML_16140 PF12704 MacB-like periplasmic core domain AHML_16145 PF02321 Outer membrane efflux protein AHML_16150 PF04954 Siderophore-interacting protein AHML_16150 PF08021 Siderophore-interacting FAD-binding domain AHML_16155 PF00793 DAHP synthetase I family AHML_16160 PF00816 H-NS histone family AHML_16175 PF01266 FAD dependent oxidoreductase AHML_16180 PF07883 Cupin domain AHML_16180 PF01381 Helix-turn-helix AHML_16185 PF00171 Aldehyde dehydrogenase family AHML_16190 PF00202 Aminotransferase class-III AHML_16195 PF00324 Amino acid permease AHML_16205 PF13520 Amino acid permease AHML_16215 PF02690 Na+/Pi-cotransporter AHML_16220 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AHML_16220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHML_16225 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AHML_16230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_16230 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHML_16230 PF00989 PAS fold AHML_16230 PF00072 Response regulator receiver domain AHML_16230 PF01627 Hpt domain AHML_16230 PF00512 His Kinase A (phospho-acceptor) domain AHML_16245 PF01048 Phosphorylase superfamily AHML_16260 PF00005 ABC transporter AHML_16260 PF12848 ABC transporter AHML_16275 PF13474 SnoaL-like domain AHML_16280 PF00291 Pyridoxal-phosphate dependent enzyme AHML_16280 PF14821 Threonine synthase N terminus AHML_16285 PF08544 GHMP kinases C terminal AHML_16285 PF00288 GHMP kinases N terminal domain AHML_16290 PF03447 Homoserine dehydrogenase, NAD binding domain AHML_16290 PF00696 Amino acid kinase family AHML_16290 PF00742 Homoserine dehydrogenase AHML_16290 PF01842 ACT domain AHML_16290 PF13840 ACT domain AHML_16295 PF00588 SpoU rRNA Methylase family AHML_16300 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AHML_16315 PF03737 Aldolase/RraA AHML_16325 PF00072 Response regulator receiver domain AHML_16325 PF00486 Transcriptional regulatory protein, C terminal AHML_16330 PF00005 ABC transporter AHML_16330 PF00664 ABC transporter transmembrane region AHML_16335 PF00664 ABC transporter transmembrane region AHML_16335 PF00005 ABC transporter AHML_16355 PF01980 tRNA-methyltransferase O AHML_16355 PF18389 TrmO C-terminal domain AHML_16360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AHML_16360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AHML_16370 PF17871 AAA lid domain AHML_16370 PF10431 C-terminal, D2-small domain, of ClpB protein AHML_16370 PF02861 Clp amino terminal domain, pathogenicity island component AHML_16370 PF07724 AAA domain (Cdc48 subfamily) AHML_16370 PF00004 ATPase family associated with various cellular activities (AAA) AHML_16375 PF00291 Pyridoxal-phosphate dependent enzyme AHML_16380 PF00381 PTS HPr component phosphorylation site AHML_16385 PF02896 PEP-utilising enzyme, TIM barrel domain AHML_16385 PF00391 PEP-utilising enzyme, mobile domain AHML_16385 PF05524 PEP-utilising enzyme, N-terminal AHML_16390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AHML_16395 PF00990 Diguanylate cyclase, GGDEF domain AHML_16395 PF17151 Periplasmic sensor domain AHML_16405 PF01292 Prokaryotic cytochrome b561 AHML_16420 PF13476 AAA domain AHML_16425 PF00149 Calcineurin-like phosphoesterase AHML_16425 PF12320 Type 5 capsule protein repressor C-terminal domain AHML_16435 PF04381 Putative exonuclease, RdgC AHML_16445 PF00999 Sodium/hydrogen exchanger family AHML_16445 PF02254 TrkA-N domain AHML_16450 PF04151 Bacterial pre-peptidase C-terminal domain AHML_16450 PF04389 Peptidase family M28 AHML_16460 PF00224 Pyruvate kinase, barrel domain AHML_16460 PF02887 Pyruvate kinase, alpha/beta domain AHML_16465 PF12794 Mechanosensitive ion channel inner membrane domain 1 AHML_16465 PF12795 Mechanosensitive ion channel porin domain AHML_16465 PF00924 Mechanosensitive ion channel AHML_16475 PF10282 Lactonase, 7-bladed beta-propeller AHML_16480 PF00860 Permease family AHML_16490 PF05433 Glycine zipper 2TM domain AHML_16490 PF16998 17 kDa outer membrane surface antigen AHML_16495 PF00390 Malic enzyme, N-terminal domain AHML_16495 PF03949 Malic enzyme, NAD binding domain AHML_16500 PF00072 Response regulator receiver domain AHML_16510 PF13247 4Fe-4S dicluster domain AHML_16515 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AHML_16515 PF00384 Molybdopterin oxidoreductase AHML_16515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHML_16515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHML_16515 PF12838 4Fe-4S dicluster domain AHML_16515 PF01568 Molydopterin dinucleotide binding domain AHML_16515 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AHML_16515 PF12838 4Fe-4S dicluster domain AHML_16515 PF01568 Molydopterin dinucleotide binding domain AHML_16515 PF00384 Molybdopterin oxidoreductase AHML_16550 PF02634 FdhD/NarQ family AHML_16555 PF12727 PBP superfamily domain AHML_16555 PF12728 Helix-turn-helix domain AHML_16560 PF00512 His Kinase A (phospho-acceptor) domain AHML_16560 PF00989 PAS fold AHML_16560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_16565 PF00158 Sigma-54 interaction domain AHML_16565 PF00072 Response regulator receiver domain AHML_16565 PF02954 Bacterial regulatory protein, Fis family AHML_16570 PF12849 PBP superfamily domain AHML_16575 PF00528 Binding-protein-dependent transport system inner membrane component AHML_16580 PF00005 ABC transporter AHML_16585 PF12804 MobA-like NTP transferase domain AHML_16590 PF03453 MoeA N-terminal region (domain I and II) AHML_16590 PF03454 MoeA C-terminal region (domain IV) AHML_16590 PF00994 Probable molybdopterin binding domain AHML_16595 PF04632 Fusaric acid resistance protein family AHML_16610 PF08447 PAS fold AHML_16610 PF13426 PAS domain AHML_16610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_16630 PF05114 Protein of unknown function (DUF692) AHML_16640 PF10725 Protein of unknown function (DUF2517) AHML_16650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_16650 PF00512 His Kinase A (phospho-acceptor) domain AHML_16650 PF00072 Response regulator receiver domain AHML_16650 PF09308 LuxQ, periplasmic AHML_16655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_16660 PF00528 Binding-protein-dependent transport system inner membrane component AHML_16665 PF00528 Binding-protein-dependent transport system inner membrane component AHML_16665 PF12911 N-terminal TM domain of oligopeptide transport permease C AHML_16670 PF00005 ABC transporter AHML_16670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_16675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_16675 PF00005 ABC transporter AHML_16685 PF01869 BadF/BadG/BcrA/BcrD ATPase family AHML_16690 PF02838 Glycosyl hydrolase family 20, domain 2 AHML_16690 PF00728 Glycosyl hydrolase family 20, catalytic domain AHML_16695 PF08447 PAS fold AHML_16695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_16710 PF08272 Topoisomerase I zinc-ribbon-like AHML_16710 PF01131 DNA topoisomerase AHML_16710 PF01751 Toprim domain AHML_16710 PF01396 Topoisomerase DNA binding C4 zinc finger AHML_16715 PF04996 Succinylarginine dihydrolase AHML_16720 PF08496 Peptidase family S49 N-terminal AHML_16720 PF01343 Peptidase family S49 AHML_16725 PF00106 short chain dehydrogenase AHML_16730 PF03466 LysR substrate binding domain AHML_16730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_16735 PF07690 Major Facilitator Superfamily AHML_16740 PF00155 Aminotransferase class I and II AHML_16750 PF03466 LysR substrate binding domain AHML_16750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_16760 PF01161 Phosphatidylethanolamine-binding protein AHML_16770 PF01204 Trehalase AHML_16775 PF00579 tRNA synthetases class I (W and Y) AHML_16780 PF01476 LysM domain AHML_16780 PF01551 Peptidase family M23 AHML_16780 PF08525 Opacity-associated protein A N-terminal motif AHML_16785 PF03702 Anhydro-N-acetylmuramic acid kinase AHML_16790 PF01965 DJ-1/PfpI family AHML_16795 PF01042 Endoribonuclease L-PSP AHML_16800 PF12697 Alpha/beta hydrolase family AHML_16805 PF00563 EAL domain AHML_16805 PF12792 CSS motif domain associated with EAL AHML_16810 PF00486 Transcriptional regulatory protein, C terminal AHML_16815 PF00456 Transketolase, thiamine diphosphate binding domain AHML_16815 PF02780 Transketolase, C-terminal domain AHML_16815 PF02779 Transketolase, pyrimidine binding domain AHML_16820 PF00438 S-adenosylmethionine synthetase, N-terminal domain AHML_16820 PF02772 S-adenosylmethionine synthetase, central domain AHML_16820 PF02773 S-adenosylmethionine synthetase, C-terminal domain AHML_16825 PF10263 SprT-like family AHML_16825 PF17283 SprT-like zinc ribbon domain AHML_16830 PF04231 Endonuclease I AHML_16835 PF04452 RNA methyltransferase AHML_16840 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AHML_16840 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AHML_16845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_16845 PF12729 Four helix bundle sensory module for signal transduction AHML_16845 PF00672 HAMP domain AHML_16850 PF02622 Uncharacterized ACR, COG1678 AHML_16855 PF03652 Holliday junction resolvase AHML_16860 PF00854 POT family AHML_16865 PF00144 Beta-lactamase AHML_16870 PF07726 ATPase family associated with various cellular activities (AAA) AHML_16870 PF17863 AAA lid domain AHML_16880 PF01841 Transglutaminase-like superfamily AHML_16880 PF13559 Domain of unknown function (DUF4129) AHML_16880 PF11992 Domain of unknown function (DUF3488) AHML_16885 PF01235 Sodium:alanine symporter family AHML_16890 PF00923 Transaldolase/Fructose-6-phosphate aldolase AHML_16905 PF03167 Uracil DNA glycosylase superfamily AHML_16910 PF01228 Glycine radical AHML_16915 PF00375 Sodium:dicarboxylate symporter family AHML_16920 PF00793 DAHP synthetase I family AHML_16925 PF13369 Transglutaminase-like superfamily AHML_16935 PF17827 PrmC N-terminal domain AHML_16935 PF13847 Methyltransferase domain AHML_16940 PF00472 RF-1 domain AHML_16940 PF03462 PCRF domain AHML_16945 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AHML_16945 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AHML_16945 PF01488 Shikimate / quinate 5-dehydrogenase AHML_16950 PF03550 Outer membrane lipoprotein LolB AHML_16955 PF08544 GHMP kinases C terminal AHML_16955 PF00288 GHMP kinases N terminal domain AHML_16960 PF14572 Phosphoribosyl synthetase-associated domain AHML_16960 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AHML_16965 PF02872 5'-nucleotidase, C-terminal domain AHML_16965 PF00149 Calcineurin-like phosphoesterase AHML_16970 PF01195 Peptidyl-tRNA hydrolase AHML_16975 PF01926 50S ribosome-binding GTPase AHML_16975 PF06071 Protein of unknown function (DUF933) AHML_16980 PF02080 TrkA-C domain AHML_16980 PF03600 Citrate transporter AHML_16985 PF04973 Nicotinamide mononucleotide transporter AHML_16990 PF01048 Phosphorylase superfamily AHML_17010 PF16657 Maltogenic Amylase, C-terminal domain AHML_17010 PF00128 Alpha amylase, catalytic domain AHML_17020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHML_17020 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AHML_17020 PF10371 Domain of unknown function AHML_17020 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AHML_17020 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AHML_17025 PF07690 Major Facilitator Superfamily AHML_17030 PF13419 Haloacid dehalogenase-like hydrolase AHML_17040 PF00171 Aldehyde dehydrogenase family AHML_17045 PF04958 Arginine N-succinyltransferase beta subunit AHML_17050 PF00202 Aminotransferase class-III AHML_17055 PF00117 Glutamine amidotransferase class-I AHML_17065 PF00579 tRNA synthetases class I (W and Y) AHML_17070 PF13419 Haloacid dehalogenase-like hydrolase AHML_17075 PF00834 Ribulose-phosphate 3 epimerase family AHML_17080 PF02086 D12 class N6 adenine-specific DNA methyltransferase AHML_17090 PF01761 3-dehydroquinate synthase AHML_17095 PF01202 Shikimate kinase AHML_17100 PF00263 Bacterial type II and III secretion system protein AHML_17100 PF07660 Secretin and TonB N terminus short domain AHML_17100 PF03958 Bacterial type II/III secretion system short domain AHML_17100 PF11741 AMIN domain AHML_17125 PF00912 Transglycosylase AHML_17125 PF17092 Penicillin-binding protein OB-like domain AHML_17125 PF00905 Penicillin binding protein transpeptidase domain AHML_17130 PF03466 LysR substrate binding domain AHML_17130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_17135 PF02743 Cache domain AHML_17135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_17135 PF00672 HAMP domain AHML_17150 PF03466 LysR substrate binding domain AHML_17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_17165 PF01476 LysM domain AHML_17165 PF01551 Peptidase family M23 AHML_17165 PF08525 Opacity-associated protein A N-terminal motif AHML_17175 PF12795 Mechanosensitive ion channel porin domain AHML_17175 PF12794 Mechanosensitive ion channel inner membrane domain 1 AHML_17175 PF00924 Mechanosensitive ion channel AHML_17180 PF03009 Glycerophosphoryl diester phosphodiesterase family AHML_17185 PF02743 Cache domain AHML_17185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_17185 PF00672 HAMP domain AHML_17190 PF00890 FAD binding domain AHML_17190 PF02910 Fumarate reductase flavoprotein C-term AHML_17195 PF13085 2Fe-2S iron-sulfur cluster binding domain AHML_17195 PF13183 4Fe-4S dicluster domain AHML_17200 PF02300 Fumarate reductase subunit C AHML_17205 PF02313 Fumarate reductase subunit D AHML_17225 PF06224 Winged helix DNA-binding domain AHML_17240 PF00501 AMP-binding enzyme AHML_17260 PF00072 Response regulator receiver domain AHML_17260 PF00486 Transcriptional regulatory protein, C terminal AHML_17265 PF08521 Two-component sensor kinase N-terminal AHML_17265 PF00512 His Kinase A (phospho-acceptor) domain AHML_17265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_17275 PF00478 IMP dehydrogenase / GMP reductase domain AHML_17285 PF09285 Elongation factor P, C-terminal AHML_17285 PF08207 Elongation factor P (EF-P) KOW-like domain AHML_17285 PF01132 Elongation factor P (EF-P) OB domain AHML_17290 PF09997 Predicted membrane protein (DUF2238) AHML_17300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHML_17300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHML_17310 PF00990 Diguanylate cyclase, GGDEF domain AHML_17310 PF08448 PAS fold AHML_17320 PF13419 Haloacid dehalogenase-like hydrolase AHML_17335 PF05230 MASE2 domain AHML_17335 PF00990 Diguanylate cyclase, GGDEF domain AHML_17340 PF00313 'Cold-shock' DNA-binding domain AHML_17345 PF00857 Isochorismatase family AHML_17350 PF01494 FAD binding domain AHML_17355 PF01938 TRAM domain AHML_17355 PF04055 Radical SAM superfamily AHML_17355 PF00919 Uncharacterized protein family UPF0004 AHML_17360 PF02562 PhoH-like protein AHML_17365 PF02130 Uncharacterized protein family UPF0054 AHML_17370 PF00571 CBS domain AHML_17370 PF03471 Transporter associated domain AHML_17375 PF00795 Carbon-nitrogen hydrolase AHML_17380 PF07295 Zinc-ribbon containing domain AHML_17385 PF08264 Anticodon-binding domain of tRNA AHML_17385 PF00133 tRNA synthetases class I (I, L, M and V) AHML_17385 PF13603 Leucyl-tRNA synthetase, Domain 2 AHML_17400 PF01467 Cytidylyltransferase-like AHML_17410 PF02590 Predicted SPOUT methyltransferase AHML_17415 PF00905 Penicillin binding protein transpeptidase domain AHML_17415 PF03717 Penicillin-binding Protein dimerisation domain AHML_17420 PF01098 Cell cycle protein AHML_17425 PF01098 Cell cycle protein AHML_17430 PF13406 Transglycosylase SLT domain AHML_17435 PF03330 Lytic transglycolase AHML_17435 PF05036 Sporulation related domain AHML_17440 PF00768 D-alanyl-D-alanine carboxypeptidase AHML_17440 PF07943 Penicillin-binding protein 5, C-terminal domain AHML_17445 PF04359 Protein of unknown function (DUF493) AHML_17450 PF03099 Biotin/lipoate A/B protein ligase family AHML_17455 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AHML_17455 PF04055 Radical SAM superfamily AHML_17465 PF06821 Serine hydrolase AHML_17470 PF02508 Rnf-Nqr subunit, membrane protein AHML_17490 PF13411 MerR HTH family regulatory protein AHML_17495 PF01368 DHH family AHML_17495 PF17768 RecJ OB domain AHML_17495 PF02272 DHHA1 domain AHML_17500 PF10411 Disulfide bond isomerase protein N-terminus AHML_17500 PF13098 Thioredoxin-like domain AHML_17505 PF01741 Large-conductance mechanosensitive channel, MscL AHML_17510 PF00589 Phage integrase family AHML_17510 PF02899 Phage integrase, N-terminal SAM-like domain AHML_17515 PF00258 Flavodoxin AHML_17520 PF01523 Putative modulator of DNA gyrase AHML_17525 PF01523 Putative modulator of DNA gyrase AHML_17535 PF03734 L,D-transpeptidase catalytic domain AHML_17535 PF17969 L,D-transpeptidase C-terminal domain AHML_17565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHML_17565 PF01568 Molydopterin dinucleotide binding domain AHML_17565 PF00384 Molybdopterin oxidoreductase AHML_17570 PF03916 Polysulphide reductase, NrfD AHML_17575 PF13247 4Fe-4S dicluster domain AHML_17580 PF00989 PAS fold AHML_17580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_17580 PF00512 His Kinase A (phospho-acceptor) domain AHML_17585 PF00196 Bacterial regulatory proteins, luxR family AHML_17585 PF00072 Response regulator receiver domain AHML_17590 PF06580 Histidine kinase AHML_17590 PF07694 5TMR of 5TMR-LYT AHML_17595 PF04397 LytTr DNA-binding domain AHML_17595 PF00072 Response regulator receiver domain AHML_17600 PF02554 Carbon starvation protein CstA AHML_17600 PF13722 5TM C-terminal transporter carbon starvation CstA AHML_17605 PF03575 Peptidase family S51 AHML_17610 PF10415 Fumarase C C-terminus AHML_17610 PF00206 Lyase AHML_17620 PF02635 DsrE/DsrF-like family AHML_17625 PF00563 EAL domain AHML_17625 PF03707 Bacterial signalling protein N terminal repeat AHML_17625 PF00990 Diguanylate cyclase, GGDEF domain AHML_17640 PF00575 S1 RNA binding domain AHML_17640 PF03725 3' exoribonuclease family, domain 2 AHML_17640 PF01138 3' exoribonuclease family, domain 1 AHML_17640 PF00013 KH domain AHML_17640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AHML_17645 PF00312 Ribosomal protein S15 AHML_17650 PF09157 Pseudouridine synthase II TruB, C-terminal AHML_17650 PF01509 TruB family pseudouridylate synthase (N terminal domain) AHML_17650 PF16198 tRNA pseudouridylate synthase B C-terminal domain AHML_17655 PF02033 Ribosome-binding factor A AHML_17660 PF04760 Translation initiation factor IF-2, N-terminal region AHML_17660 PF08364 Bacterial translation initiation factor IF-2 associated region AHML_17660 PF00009 Elongation factor Tu GTP binding domain AHML_17660 PF11987 Translation-initiation factor 2 AHML_17665 PF13184 NusA-like KH domain AHML_17665 PF00575 S1 RNA binding domain AHML_17665 PF08529 NusA N-terminal domain AHML_17670 PF02576 RimP N-terminal domain AHML_17670 PF17384 RimP C-terminal SH3 domain AHML_17675 PF03840 Preprotein translocase SecG subunit AHML_17680 PF00121 Triosephosphate isomerase AHML_17685 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AHML_17685 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AHML_17685 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AHML_17685 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AHML_17690 PF00809 Pterin binding enzyme AHML_17695 PF00004 ATPase family associated with various cellular activities (AAA) AHML_17695 PF17862 AAA+ lid domain AHML_17695 PF06480 FtsH Extracellular AHML_17695 PF01434 Peptidase family M41 AHML_17700 PF01728 FtsJ-like methyltransferase AHML_17705 PF01985 CRS1 / YhbY (CRM) domain AHML_17715 PF01272 Transcription elongation factor, GreA/GreB, C-term AHML_17715 PF03449 Transcription elongation factor, N-terminal AHML_17720 PF00691 OmpA family AHML_17720 PF13677 Membrane MotB of proton-channel complex MotA/MotB AHML_17725 PF01618 MotA/TolQ/ExbB proton channel family AHML_17730 PF02609 Exonuclease VII small subunit AHML_17735 PF00348 Polyprenyl synthetase AHML_17740 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AHML_17740 PF02780 Transketolase, C-terminal domain AHML_17740 PF02779 Transketolase, pyrimidine binding domain AHML_17745 PF12911 N-terminal TM domain of oligopeptide transport permease C AHML_17745 PF00528 Binding-protein-dependent transport system inner membrane component AHML_17755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_17760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_17760 PF00005 ABC transporter AHML_17765 PF04608 Phosphatidylglycerophosphatase A AHML_17770 PF00586 AIR synthase related protein, N-terminal domain AHML_17770 PF02769 AIR synthase related protein, C-terminal domain AHML_17775 PF01029 NusB family AHML_17780 PF00885 6,7-dimethyl-8-ribityllumazine synthase AHML_17795 PF00925 GTP cyclohydrolase II AHML_17795 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AHML_17800 PF00677 Lumazine binding domain AHML_17805 PF01872 RibD C-terminal domain AHML_17805 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AHML_17810 PF03477 ATP cone domain AHML_17825 PF00464 Serine hydroxymethyltransferase AHML_17840 PF02613 Nitrate reductase delta subunit AHML_17860 PF13188 PAS domain AHML_17860 PF03707 Bacterial signalling protein N terminal repeat AHML_17860 PF00563 EAL domain AHML_17860 PF00990 Diguanylate cyclase, GGDEF domain AHML_17870 PF16177 Acetyl-coenzyme A synthetase N-terminus AHML_17870 PF00501 AMP-binding enzyme AHML_17870 PF13193 AMP-binding enzyme C-terminal domain AHML_17875 PF16177 Acetyl-coenzyme A synthetase N-terminus AHML_17875 PF00501 AMP-binding enzyme AHML_17875 PF13193 AMP-binding enzyme C-terminal domain AHML_17880 PF01220 Dehydroquinase class II AHML_17885 PF00364 Biotin-requiring enzyme AHML_17890 PF00289 Biotin carboxylase, N-terminal domain AHML_17890 PF02785 Biotin carboxylase C-terminal domain AHML_17890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AHML_17900 PF00474 Sodium:solute symporter family AHML_17905 PF00367 phosphotransferase system, EIIB AHML_17905 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AHML_17905 PF02378 Phosphotransferase system, EIIC AHML_17910 PF03466 LysR substrate binding domain AHML_17910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_17915 PF00107 Zinc-binding dehydrogenase AHML_17915 PF08240 Alcohol dehydrogenase GroES-like domain AHML_17925 PF01842 ACT domain AHML_17925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHML_17925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHML_17930 PF12464 Maltose acetyltransferase AHML_17930 PF14602 Hexapeptide repeat of succinyl-transferase AHML_17935 PF00881 Nitroreductase family AHML_17940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AHML_17940 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_17945 PF01343 Peptidase family S49 AHML_17960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHML_17960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AHML_17965 PF07023 Protein of unknown function (DUF1315) AHML_17970 PF00710 Asparaginase, N-terminal AHML_17970 PF17763 Glutaminase/Asparaginase C-terminal domain AHML_17975 PF03616 Sodium/glutamate symporter AHML_17980 PF02743 Cache domain AHML_17980 PF00672 HAMP domain AHML_17980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_17985 PF00472 RF-1 domain AHML_17985 PF03462 PCRF domain AHML_17990 PF00152 tRNA synthetases class II (D, K and N) AHML_17990 PF01336 OB-fold nucleic acid binding domain AHML_17995 PF02567 Phenazine biosynthesis-like protein AHML_18000 PF00258 Flavodoxin AHML_18000 PF00667 FAD binding domain AHML_18000 PF00175 Oxidoreductase NAD-binding domain AHML_18005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHML_18005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHML_18010 PF01507 Phosphoadenosine phosphosulfate reductase family AHML_18015 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AHML_18020 PF00528 Binding-protein-dependent transport system inner membrane component AHML_18025 PF00005 ABC transporter AHML_18025 PF00571 CBS domain AHML_18030 PF00186 Dihydrofolate reductase AHML_18035 PF12821 Threonine/Serine exporter, ThrE AHML_18040 PF06738 Putative threonine/serine exporter AHML_18050 PF00994 Probable molybdopterin binding domain AHML_18060 PF00109 Beta-ketoacyl synthase, N-terminal domain AHML_18060 PF02801 Beta-ketoacyl synthase, C-terminal domain AHML_18075 PF00109 Beta-ketoacyl synthase, N-terminal domain AHML_18075 PF02801 Beta-ketoacyl synthase, C-terminal domain AHML_18100 PF00221 Aromatic amino acid lyase AHML_18110 PF07977 FabA-like domain AHML_18115 PF00501 AMP-binding enzyme AHML_18115 PF13193 AMP-binding enzyme C-terminal domain AHML_18125 PF00550 Phosphopantetheine attachment site AHML_18130 PF00550 Phosphopantetheine attachment site AHML_18165 PF00034 Cytochrome c AHML_18165 PF03150 Di-haem cytochrome c peroxidase AHML_18170 PF00194 Eukaryotic-type carbonic anhydrase AHML_18175 PF04227 Indigoidine synthase A like protein AHML_18180 PF00294 pfkB family carbohydrate kinase AHML_18185 PF13806 Rieske-like [2Fe-2S] domain AHML_18185 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_18185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHML_18185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHML_18185 PF04324 BFD-like [2Fe-2S] binding domain AHML_18185 PF18267 Rubredoxin NAD+ reductase C-terminal domain AHML_18190 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_18190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHML_18190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHML_18190 PF04324 BFD-like [2Fe-2S] binding domain AHML_18190 PF18267 Rubredoxin NAD+ reductase C-terminal domain AHML_18190 PF13806 Rieske-like [2Fe-2S] domain AHML_18195 PF00005 ABC transporter AHML_18200 PF00528 Binding-protein-dependent transport system inner membrane component AHML_18205 PF00005 ABC transporter AHML_18215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHML_18215 PF14824 Sirohaem biosynthesis protein central AHML_18215 PF10414 Sirohaem synthase dimerisation region AHML_18220 PF04324 BFD-like [2Fe-2S] binding domain AHML_18220 PF00384 Molybdopterin oxidoreductase AHML_18220 PF01568 Molydopterin dinucleotide binding domain AHML_18220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHML_18235 PF00582 Universal stress protein family AHML_18245 PF00171 Aldehyde dehydrogenase family AHML_18250 PF01472 PUA domain AHML_18250 PF00696 Amino acid kinase family AHML_18255 PF07417 Sigma factor-binding transcriptional regulator Crl AHML_18265 PF00156 Phosphoribosyl transferase domain AHML_18270 PF01546 Peptidase family M20/M25/M40 AHML_18270 PF07687 Peptidase dimerisation domain AHML_18280 PF00005 ABC transporter AHML_18280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_18285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHML_18285 PF00005 ABC transporter AHML_18295 PF00528 Binding-protein-dependent transport system inner membrane component AHML_18295 PF12911 N-terminal TM domain of oligopeptide transport permease C AHML_18300 PF00528 Binding-protein-dependent transport system inner membrane component AHML_18305 PF07715 TonB-dependent Receptor Plug Domain AHML_18305 PF00593 TonB dependent receptor AHML_18315 PF01618 MotA/TolQ/ExbB proton channel family AHML_18320 PF01618 MotA/TolQ/ExbB proton channel family AHML_18325 PF02472 Biopolymer transport protein ExbD/TolR AHML_18340 PF06483 Chitinase C AHML_18340 PF00704 Glycosyl hydrolases family 18 AHML_18350 PF00749 tRNA synthetases class I (E and Q), catalytic domain AHML_18355 PF00749 tRNA synthetases class I (E and Q), catalytic domain AHML_18360 PF00749 tRNA synthetases class I (E and Q), catalytic domain AHML_18365 PF00672 HAMP domain AHML_18365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_18375 PF00313 'Cold-shock' DNA-binding domain AHML_18385 PF00929 Exonuclease AHML_18390 PF03193 RsgA GTPase AHML_18395 PF02666 Phosphatidylserine decarboxylase AHML_18400 PF09905 DNA-binding protein VF530 AHML_18420 PF00563 EAL domain AHML_18420 PF00990 Diguanylate cyclase, GGDEF domain AHML_18420 PF03707 Bacterial signalling protein N terminal repeat AHML_18425 PF06877 Regulator of ribonuclease activity B AHML_18430 PF05547 Immune inhibitor A peptidase M6 AHML_18430 PF00801 PKD domain AHML_18440 PF00561 alpha/beta hydrolase fold AHML_18445 PF00005 ABC transporter AHML_18445 PF00664 ABC transporter transmembrane region AHML_18450 PF06004 Bacterial protein of unknown function (DUF903) AHML_18455 PF05922 Peptidase inhibitor I9 AHML_18455 PF00082 Subtilase family AHML_18460 PF00581 Rhodanese-like domain AHML_18465 PF04960 Glutaminase AHML_18470 PF04320 Protein with unknown function (DUF469) AHML_18475 PF02390 Putative methyltransferase AHML_18480 PF04389 Peptidase family M28 AHML_18480 PF01483 Proprotein convertase P-domain AHML_18485 PF00155 Aminotransferase class I and II AHML_18490 PF12792 CSS motif domain associated with EAL AHML_18490 PF00563 EAL domain AHML_18495 PF08338 Domain of unknown function (DUF1731) AHML_18495 PF01370 NAD dependent epimerase/dehydratase family AHML_18505 PF00005 ABC transporter AHML_18510 PF13472 GDSL-like Lipase/Acylhydrolase family AHML_18515 PF01584 CheW-like domain AHML_18515 PF00072 Response regulator receiver domain AHML_18525 PF06826 Predicted Permease Membrane Region AHML_18525 PF02080 TrkA-C domain AHML_18530 PF03006 Haemolysin-III related AHML_18535 PF00282 Pyridoxal-dependent decarboxylase conserved domain AHML_18540 PF04279 Intracellular septation protein A AHML_18545 PF03795 YCII-related domain AHML_18550 PF00459 Inositol monophosphatase family AHML_18560 PF00483 Nucleotidyl transferase AHML_18565 PF00854 POT family AHML_18570 PF00072 Response regulator receiver domain AHML_18600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_18605 PF02321 Outer membrane efflux protein AHML_18610 PF01207 Dihydrouridine synthase (Dus) AHML_18615 PF02954 Bacterial regulatory protein, Fis family AHML_18620 PF01810 LysE type translocator AHML_18625 PF01521 Iron-sulphur cluster biosynthesis AHML_18635 PF00654 Voltage gated chloride channel AHML_18640 PF00202 Aminotransferase class-III AHML_18655 PF01569 PAP2 superfamily AHML_18665 PF11849 Domain of unknown function (DUF3369) AHML_18675 PF00893 Small Multidrug Resistance protein AHML_18680 PF00893 Small Multidrug Resistance protein AHML_18685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHML_18690 PF14814 Bifunctional transglycosylase second domain AHML_18690 PF00905 Penicillin binding protein transpeptidase domain AHML_18690 PF00912 Transglycosylase AHML_18695 PF08482 ATP-dependent helicase C-terminal AHML_18695 PF00271 Helicase conserved C-terminal domain AHML_18695 PF04408 Helicase associated domain (HA2) AHML_18695 PF00270 DEAD/DEAH box helicase AHML_18705 PF17746 SfsA N-terminal OB domain AHML_18705 PF03749 Sugar fermentation stimulation protein RE domain AHML_18710 PF01258 Prokaryotic dksA/traR C4-type zinc finger AHML_18715 PF00749 tRNA synthetases class I (E and Q), catalytic domain AHML_18720 PF01743 Poly A polymerase head domain AHML_18720 PF12626 Polymerase A arginine-rich C-terminus AHML_18720 PF12627 Probable RNA and SrmB- binding site of polymerase A AHML_18725 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AHML_18730 PF02548 Ketopantoate hydroxymethyltransferase AHML_18735 PF02569 Pantoate-beta-alanine ligase AHML_18755 PF01869 BadF/BadG/BcrA/BcrD ATPase family AHML_18760 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component AHML_18765 PF01061 ABC-2 type transporter AHML_18770 PF00005 ABC transporter AHML_18775 PF00156 Phosphoribosyl transferase domain AHML_18780 PF00440 Bacterial regulatory proteins, tetR family AHML_18785 PF02441 Flavoprotein AHML_18790 PF02875 Mur ligase family, glutamate ligase domain AHML_18790 PF08245 Mur ligase middle domain AHML_18790 PF01225 Mur ligase family, catalytic domain AHML_18795 PF00719 Inorganic pyrophosphatase AHML_18810 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AHML_18825 PF00005 ABC transporter AHML_18845 PF08447 PAS fold AHML_18845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_18870 PF02080 TrkA-C domain AHML_18870 PF03600 Citrate transporter AHML_18875 PF00009 Elongation factor Tu GTP binding domain AHML_18880 PF01507 Phosphoadenosine phosphosulfate reductase family AHML_18885 PF14824 Sirohaem biosynthesis protein central AHML_18885 PF10414 Sirohaem synthase dimerisation region AHML_18885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHML_18890 PF16200 C-terminal region of band_7 AHML_18890 PF01145 SPFH domain / Band 7 family AHML_18895 PF01957 NfeD-like C-terminal, partner-binding AHML_18900 PF00571 CBS domain AHML_18900 PF01380 SIS domain AHML_18905 PF12848 ABC transporter AHML_18905 PF00005 ABC transporter AHML_18915 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AHML_18920 PF03466 LysR substrate binding domain AHML_18920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_18925 PF02525 Flavodoxin-like fold AHML_18950 PF00561 alpha/beta hydrolase fold AHML_18955 PF00474 Sodium:solute symporter family AHML_18960 PF03734 L,D-transpeptidase catalytic domain AHML_18960 PF17969 L,D-transpeptidase C-terminal domain AHML_18965 PF00924 Mechanosensitive ion channel AHML_18970 PF00871 Acetokinase family AHML_18975 PF04074 YhcH/YjgK/YiaL AHML_18985 PF00394 Multicopper oxidase AHML_18985 PF07732 Multicopper oxidase AHML_18985 PF07731 Multicopper oxidase AHML_18990 PF01177 Asp/Glu/Hydantoin racemase AHML_18995 PF01810 LysE type translocator AHML_19005 PF00155 Aminotransferase class I and II AHML_19005 PF00392 Bacterial regulatory proteins, gntR family AHML_19030 PF00209 Sodium:neurotransmitter symporter family AHML_19040 PF00209 Sodium:neurotransmitter symporter family AHML_19060 PF07690 Major Facilitator Superfamily AHML_19070 PF01037 Lrp/AsnC ligand binding domain AHML_19085 PF01047 MarR family AHML_19090 PF02566 OsmC-like protein AHML_19095 PF00107 Zinc-binding dehydrogenase AHML_19095 PF16884 N-terminal domain of oxidoreductase AHML_19100 PF00293 NUDIX domain AHML_19110 PF01641 SelR domain AHML_19115 PF00128 Alpha amylase, catalytic domain AHML_19115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AHML_19120 PF00128 Alpha amylase, catalytic domain AHML_19120 PF02806 Alpha amylase, C-terminal all-beta domain AHML_19120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AHML_19125 PF02446 4-alpha-glucanotransferase AHML_19130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHML_19130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AHML_19135 PF01263 Aldose 1-epimerase AHML_19140 PF02445 Quinolinate synthetase A protein AHML_19145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_19145 PF00672 HAMP domain AHML_19150 PF13174 Tetratricopeptide repeat AHML_19150 PF16331 TolA binding protein trimerisation AHML_19155 PF00691 OmpA family AHML_19160 PF07676 WD40-like Beta Propeller Repeat AHML_19160 PF04052 TolB amino-terminal domain AHML_19170 PF02472 Biopolymer transport protein ExbD/TolR AHML_19175 PF01618 MotA/TolQ/ExbB proton channel family AHML_19180 PF03061 Thioesterase superfamily AHML_19185 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) AHML_19190 PF08173 Membrane bound YbgT-like protein AHML_19195 PF02322 Cytochrome bd terminal oxidase subunit II AHML_19200 PF01654 Cytochrome bd terminal oxidase subunit I AHML_19205 PF05491 RuvB C-terminal winged helix domain AHML_19205 PF05496 Holliday junction DNA helicase RuvB P-loop domain AHML_19205 PF17864 RuvB AAA lid domain AHML_19210 PF07499 RuvA, C-terminal domain AHML_19210 PF01330 RuvA N terminal domain AHML_19215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_19215 PF00672 HAMP domain AHML_19220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AHML_19220 PF03129 Anticodon binding domain AHML_19220 PF04073 Aminoacyl-tRNA editing domain AHML_19225 PF00106 short chain dehydrogenase AHML_19240 PF00378 Enoyl-CoA hydratase/isomerase AHML_19245 PF10952 Protein of unknown function (DUF2753) AHML_19250 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_19260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHML_19275 PF02594 Uncharacterised ACR, YggU family COG1872 AHML_19280 PF02325 YGGT family AHML_19285 PF03807 NADP oxidoreductase coenzyme F420-dependent AHML_19285 PF14748 Pyrroline-5-carboxylate reductase dimerisation AHML_19290 PF01168 Alanine racemase, N-terminal domain AHML_19295 PF00437 Type II/IV secretion system protein AHML_19300 PF00437 Type II/IV secretion system protein AHML_19305 PF03883 Peroxide stress protein YaaA AHML_19310 PF00271 Helicase conserved C-terminal domain AHML_19310 PF00270 DEAD/DEAH box helicase AHML_19315 PF05175 Methyltransferase small domain AHML_19320 PF05525 Branched-chain amino acid transport protein AHML_19325 PF05525 Branched-chain amino acid transport protein AHML_19340 PF01475 Ferric uptake regulator family AHML_19345 PF01207 Dihydrouridine synthase (Dus) AHML_19360 PF00216 Bacterial DNA-binding protein AHML_19365 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AHML_19370 PF07238 PilZ domain AHML_19375 PF18073 Rubredoxin metal binding domain AHML_19390 PF18429 Domain of unknown function (DUF5609) AHML_19400 PF05231 MASE1 AHML_19400 PF08447 PAS fold AHML_19400 PF08448 PAS fold AHML_19400 PF00990 Diguanylate cyclase, GGDEF domain AHML_19400 PF00563 EAL domain AHML_19400 PF13426 PAS domain AHML_19405 PF01048 Phosphorylase superfamily AHML_19410 PF01676 Metalloenzyme superfamily AHML_19415 PF00591 Glycosyl transferase family, a/b domain AHML_19415 PF02885 Glycosyl transferase family, helical bundle domain AHML_19415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AHML_19420 PF01791 DeoC/LacD family aldolase AHML_19430 PF07670 Nucleoside recognition AHML_19430 PF07662 Na+ dependent nucleoside transporter C-terminus AHML_19430 PF01773 Na+ dependent nucleoside transporter N-terminus AHML_19435 PF01026 TatD related DNase AHML_19440 PF00114 Pilin (bacterial filament) AHML_19440 PF07963 Prokaryotic N-terminal methylation motif AHML_19450 PF05958 tRNA (Uracil-5-)-methyltransferase AHML_19450 PF01938 TRAM domain AHML_19455 PF00909 Ammonium Transporter Family AHML_19460 PF00589 Phage integrase family AHML_19460 PF02899 Phage integrase, N-terminal SAM-like domain AHML_19480 PF06892 Phage regulatory protein CII (CP76) AHML_19680 PF03739 Lipopolysaccharide export system permease LptF/LptG AHML_19685 PF03739 Lipopolysaccharide export system permease LptF/LptG AHML_19690 PF02789 Cytosol aminopeptidase family, N-terminal domain AHML_19690 PF00883 Cytosol aminopeptidase family, catalytic domain AHML_19695 PF04364 DNA polymerase III chi subunit, HolC AHML_19700 PF00133 tRNA synthetases class I (I, L, M and V) AHML_19700 PF10458 Valyl tRNA synthetase tRNA binding arm AHML_19700 PF08264 Anticodon-binding domain of tRNA AHML_19705 PF00571 CBS domain AHML_19705 PF01595 Cyclin M transmembrane N-terminal domain AHML_19705 PF03471 Transporter associated domain AHML_19710 PF09335 SNARE associated Golgi protein AHML_19715 PF00768 D-alanyl-D-alanine carboxypeptidase AHML_19720 PF02599 Global regulator protein family AHML_19725 PF00696 Amino acid kinase family AHML_19725 PF01842 ACT domain AHML_19725 PF13840 ACT domain AHML_19730 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AHML_19730 PF01411 tRNA synthetases class II (A) AHML_19730 PF02272 DHHA1 domain AHML_19735 PF02631 RecX family AHML_19740 PF00154 recA bacterial DNA recombination protein AHML_19745 PF02464 Competence-damaged protein AHML_19765 PF00589 Phage integrase family AHML_19765 PF13356 Arm DNA-binding domain AHML_19770 PF01624 MutS domain I AHML_19770 PF05188 MutS domain II AHML_19770 PF05192 MutS domain III AHML_19770 PF05190 MutS family domain IV AHML_19770 PF00488 MutS domain V AHML_19775 PF02028 BCCT, betaine/carnitine/choline family transporter AHML_19790 PF04222 Protein of unknown function (DUF416) AHML_19795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHML_19800 PF01551 Peptidase family M23 AHML_19800 PF08525 Opacity-associated protein A N-terminal motif AHML_19800 PF01476 LysM domain AHML_19820 PF01297 Zinc-uptake complex component A periplasmic AHML_19825 PF00005 ABC transporter AHML_19830 PF00950 ABC 3 transport family AHML_19845 PF00892 EamA-like transporter family AHML_19850 PF03167 Uracil DNA glycosylase superfamily AHML_19855 PF00892 EamA-like transporter family AHML_19865 PF01541 GIY-YIG catalytic domain AHML_19880 PF04012 PspA/IM30 family AHML_19885 PF01553 Acyltransferase AHML_19910 PF00578 AhpC/TSA family AHML_19915 PF01556 DnaJ C terminal domain AHML_19915 PF00684 DnaJ central domain AHML_19915 PF00226 DnaJ domain AHML_19950 PF03989 DNA gyrase C-terminal domain, beta-propeller AHML_19950 PF00521 DNA gyrase/topoisomerase IV, subunit A AHML_19955 PF01751 Toprim domain AHML_19955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_19955 PF00986 DNA gyrase B subunit, carboxyl terminus AHML_19955 PF00204 DNA gyrase B AHML_19960 PF04632 Fusaric acid resistance protein family AHML_19965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHML_19965 PF00529 HlyD membrane-fusion protein of T1SS AHML_19970 PF07869 Protein of unknown function (DUF1656) AHML_19980 PF00293 NUDIX domain AHML_19985 PF05728 Uncharacterised protein family (UPF0227) AHML_19990 PF00149 Calcineurin-like phosphoesterase AHML_19995 PF06853 Protein of unknown function (DUF1249) AHML_20000 PF00293 NUDIX domain AHML_20005 PF02321 Outer membrane efflux protein AHML_20010 PF00294 pfkB family carbohydrate kinase AHML_20010 PF01467 Cytidylyltransferase-like AHML_20015 PF03279 Bacterial lipid A biosynthesis acyltransferase AHML_20035 PF01865 Protein of unknown function DUF47 AHML_20040 PF01384 Phosphate transporter family AHML_20045 PF04073 Aminoacyl-tRNA editing domain AHML_20065 PF00155 Aminotransferase class I and II AHML_20065 PF00392 Bacterial regulatory proteins, gntR family AHML_20070 PF03466 LysR substrate binding domain AHML_20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_20075 PF03788 LrgA family AHML_20080 PF04172 LrgB-like family AHML_20095 PF01743 Poly A polymerase head domain AHML_20095 PF12627 Probable RNA and SrmB- binding site of polymerase A AHML_20095 PF01966 HD domain AHML_20105 PF01471 Putative peptidoglycan binding domain AHML_20105 PF13401 AAA domain AHML_20110 PF16537 Type II secretion system protein B AHML_20115 PF00730 HhH-GPD superfamily base excision DNA repair protein AHML_20115 PF14815 NUDIX domain AHML_20115 PF10576 Iron-sulfur binding domain of endonuclease III AHML_20115 PF00633 Helix-hairpin-helix motif AHML_20120 PF04362 Bacterial Fe(2+) trafficking AHML_20125 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AHML_20125 PF01464 Transglycosylase SLT domain AHML_20130 PF04076 Bacterial OB fold (BOF) protein AHML_20135 PF00657 GDSL-like Lipase/Acylhydrolase AHML_20145 PF01389 OmpA-like transmembrane domain AHML_20145 PF00691 OmpA family AHML_20150 PF03886 ABC-type transport auxiliary lipoprotein component AHML_20155 PF02470 MlaD protein AHML_20160 PF04403 Paraquat-inducible protein A AHML_20165 PF17209 Hfq protein AHML_20170 PF13419 Haloacid dehalogenase-like hydrolase AHML_20180 PF00990 Diguanylate cyclase, GGDEF domain AHML_20180 PF01590 GAF domain AHML_20180 PF00360 Phytochrome region AHML_20180 PF00563 EAL domain AHML_20185 PF00701 Dihydrodipicolinate synthetase family AHML_20190 PF05175 Methyltransferase small domain AHML_20190 PF08468 Methyltransferase small domain N-terminal AHML_20195 PF00483 Nucleotidyl transferase AHML_20200 PF08323 Starch synthase catalytic domain AHML_20200 PF00534 Glycosyl transferases group 1 AHML_20215 PF03553 Na+/H+ antiporter family AHML_20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_20220 PF03466 LysR substrate binding domain AHML_20225 PF13416 Bacterial extracellular solute-binding protein AHML_20230 PF08402 TOBE domain AHML_20230 PF00005 ABC transporter AHML_20240 PF00528 Binding-protein-dependent transport system inner membrane component AHML_20245 PF00171 Aldehyde dehydrogenase family AHML_20255 PF00892 EamA-like transporter family AHML_20260 PF01037 Lrp/AsnC ligand binding domain AHML_20265 PF14602 Hexapeptide repeat of succinyl-transferase AHML_20265 PF12464 Maltose acetyltransferase AHML_20270 PF11941 Domain of unknown function (DUF3459) AHML_20270 PF00128 Alpha amylase, catalytic domain AHML_20275 PF00367 phosphotransferase system, EIIB AHML_20275 PF02378 Phosphotransferase system, EIIC AHML_20280 PF00356 Bacterial regulatory proteins, lacI family AHML_20295 PF00710 Asparaginase, N-terminal AHML_20295 PF17763 Glutaminase/Asparaginase C-terminal domain AHML_20310 PF02142 MGS-like domain AHML_20320 PF00210 Ferritin-like domain AHML_20335 PF13718 GNAT acetyltransferase 2 AHML_20335 PF05127 Helicase AHML_20335 PF17176 tRNA-binding domain AHML_20335 PF08351 Domain of unknown function (DUF1726) AHML_20340 PF00106 short chain dehydrogenase AHML_20345 PF01584 CheW-like domain AHML_20345 PF00072 Response regulator receiver domain AHML_20370 PF02660 Glycerol-3-phosphate acyltransferase AHML_20375 PF02152 Dihydroneopterin aldolase AHML_20380 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AHML_20390 PF07690 Major Facilitator Superfamily AHML_20395 PF02492 CobW/HypB/UreG, nucleotide-binding domain AHML_20395 PF07683 Cobalamin synthesis protein cobW C-terminal domain AHML_20410 PF01810 LysE type translocator AHML_20415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_20415 PF03466 LysR substrate binding domain AHML_20430 PF06434 Aconitate hydratase 2 N-terminus AHML_20430 PF00330 Aconitase family (aconitate hydratase) AHML_20430 PF11791 Aconitate B N-terminal domain AHML_20435 PF01734 Patatin-like phospholipase AHML_20440 PF12729 Four helix bundle sensory module for signal transduction AHML_20440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_20440 PF00672 HAMP domain AHML_20445 PF12729 Four helix bundle sensory module for signal transduction AHML_20445 PF00672 HAMP domain AHML_20445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_20455 PF00563 EAL domain AHML_20455 PF08448 PAS fold AHML_20455 PF05231 MASE1 AHML_20455 PF13426 PAS domain AHML_20455 PF08447 PAS fold AHML_20455 PF00990 Diguanylate cyclase, GGDEF domain AHML_20460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHML_20460 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_20465 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AHML_20465 PF00364 Biotin-requiring enzyme AHML_20465 PF02817 e3 binding domain AHML_20470 PF17831 Pyruvate dehydrogenase E1 component middle domain AHML_20470 PF00456 Transketolase, thiamine diphosphate binding domain AHML_20475 PF00392 Bacterial regulatory proteins, gntR family AHML_20475 PF07729 FCD domain AHML_20480 PF01510 N-acetylmuramoyl-L-alanine amidase AHML_20490 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AHML_20490 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AHML_20500 PF07963 Prokaryotic N-terminal methylation motif AHML_20505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AHML_20505 PF00437 Type II/IV secretion system protein AHML_20510 PF00482 Type II secretion system (T2SS), protein F AHML_20515 PF01478 Type IV leader peptidase family AHML_20515 PF06750 Bacterial Peptidase A24 N-terminal domain AHML_20520 PF01121 Dephospho-CoA kinase AHML_20525 PF07072 Cell division protein AHML_20530 PF03884 DNA gyrase inhibitor YacG AHML_20535 PF00293 NUDIX domain AHML_20545 PF02810 SEC-C motif AHML_20545 PF07517 SecA DEAD-like domain AHML_20545 PF07516 SecA Wing and Scaffold domain AHML_20545 PF01043 SecA preprotein cross-linking domain AHML_20555 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AHML_20560 PF12327 FtsZ family, C-terminal domain AHML_20560 PF00091 Tubulin/FtsZ family, GTPase domain AHML_20565 PF02491 SHS2 domain inserted in FTSA AHML_20570 PF03799 Cell division protein FtsQ AHML_20570 PF08478 POTRA domain, FtsQ-type AHML_20575 PF08245 Mur ligase middle domain AHML_20575 PF01225 Mur ligase family, catalytic domain AHML_20575 PF02875 Mur ligase family, glutamate ligase domain AHML_20580 PF04101 Glycosyltransferase family 28 C-terminal domain AHML_20580 PF03033 Glycosyltransferase family 28 N-terminal domain AHML_20585 PF01098 Cell cycle protein AHML_20590 PF02875 Mur ligase family, glutamate ligase domain AHML_20590 PF08245 Mur ligase middle domain AHML_20595 PF00953 Glycosyl transferase family 4 AHML_20595 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AHML_20600 PF08245 Mur ligase middle domain AHML_20600 PF01225 Mur ligase family, catalytic domain AHML_20600 PF02875 Mur ligase family, glutamate ligase domain AHML_20605 PF08245 Mur ligase middle domain AHML_20605 PF01225 Mur ligase family, catalytic domain AHML_20605 PF02875 Mur ligase family, glutamate ligase domain AHML_20610 PF00905 Penicillin binding protein transpeptidase domain AHML_20610 PF03717 Penicillin-binding Protein dimerisation domain AHML_20615 PF04999 Cell division protein FtsL AHML_20620 PF01795 MraW methylase family AHML_20625 PF02381 MraZ protein, putative antitoxin-like AHML_20630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHML_20635 PF04348 LppC putative lipoprotein AHML_20640 PF02021 Uncharacterised protein family UPF0102 AHML_20645 PF13580 SIS domain AHML_20650 PF04972 BON domain AHML_20655 PF04386 Stringent starvation protein B AHML_20660 PF00043 Glutathione S-transferase, C-terminal domain AHML_20660 PF02798 Glutathione S-transferase, N-terminal domain AHML_20665 PF02167 Cytochrome C1 family AHML_20670 PF00032 Cytochrome b(C-terminal)/b6/petD AHML_20670 PF00033 Cytochrome b/b6/petB AHML_20675 PF00355 Rieske [2Fe-2S] domain AHML_20675 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AHML_20685 PF00380 Ribosomal protein S9/S16 AHML_20690 PF00572 Ribosomal protein L13 AHML_20695 PF03969 AFG1-like ATPase AHML_20705 PF13180 PDZ domain AHML_20705 PF00595 PDZ domain AHML_20710 PF13180 PDZ domain AHML_20740 PF01979 Amidohydrolase family AHML_20745 PF03841 L-seryl-tRNA selenium transferase AHML_20750 PF07071 KDGP aldolase AHML_20755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHML_20755 PF00874 PRD domain AHML_20755 PF05043 Mga helix-turn-helix domain AHML_20755 PF08279 HTH domain AHML_20760 PF00381 PTS HPr component phosphorylation site AHML_20765 PF03668 P-loop ATPase protein family AHML_20770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHML_20775 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AHML_20780 PF04552 Sigma-54, DNA binding domain AHML_20780 PF00309 Sigma-54 factor, Activator interacting domain (AID) AHML_20780 PF04963 Sigma-54 factor, core binding domain AHML_20785 PF00005 ABC transporter AHML_20785 PF12399 Branched-chain amino acid ATP-binding cassette transporter AHML_20790 PF03968 OstA-like protein AHML_20795 PF06835 Lipopolysaccharide-assembly, LptC-related AHML_20805 PF01380 SIS domain AHML_20805 PF00571 CBS domain AHML_20810 PF00005 ABC transporter AHML_20815 PF02405 Permease MlaE AHML_20820 PF02470 MlaD protein AHML_20825 PF05494 MlaC protein AHML_20835 PF01722 BolA-like protein AHML_20840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AHML_20845 PF01523 Putative modulator of DNA gyrase AHML_20850 PF04751 Protein of unknown function (DUF615) AHML_20860 PF04363 Protein of unknown function (DUF496) AHML_20870 PF01381 Helix-turn-helix AHML_20870 PF07883 Cupin domain AHML_20875 PF03594 Benzoate membrane transport protein AHML_20885 PF02219 Methylenetetrahydrofolate reductase AHML_20900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_20900 PF00672 HAMP domain AHML_20905 PF03922 OmpW family AHML_20920 PF17760 UvrA interaction domain AHML_20920 PF17755 UvrA DNA-binding domain AHML_20920 PF00005 ABC transporter AHML_20925 PF00196 Bacterial regulatory proteins, luxR family AHML_20930 PF00436 Single-strand binding protein family AHML_20945 PF01545 Cation efflux family AHML_20945 PF16916 Dimerisation domain of Zinc Transporter AHML_20955 PF00313 'Cold-shock' DNA-binding domain AHML_20960 PF00593 TonB dependent receptor AHML_20960 PF07715 TonB-dependent Receptor Plug Domain AHML_20965 PF01590 GAF domain AHML_20965 PF00360 Phytochrome region AHML_20965 PF00563 EAL domain AHML_20965 PF00990 Diguanylate cyclase, GGDEF domain AHML_20970 PF00512 His Kinase A (phospho-acceptor) domain AHML_20970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_20970 PF00672 HAMP domain AHML_20975 PF00486 Transcriptional regulatory protein, C terminal AHML_20975 PF00072 Response regulator receiver domain AHML_20995 PF00990 Diguanylate cyclase, GGDEF domain AHML_20995 PF17151 Periplasmic sensor domain AHML_21005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHML_21015 PF13538 UvrD-like helicase C-terminal domain AHML_21020 PF13361 UvrD-like helicase C-terminal domain AHML_21020 PF12705 PD-(D/E)XK nuclease superfamily AHML_21020 PF00580 UvrD/REP helicase N-terminal domain AHML_21025 PF17946 RecC C-terminal domain AHML_21030 PF07681 DoxX AHML_21035 PF17954 Quercetinase C-terminal cupin domain AHML_21035 PF02678 Pirin AHML_21045 PF03466 LysR substrate binding domain AHML_21045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_21055 PF00392 Bacterial regulatory proteins, gntR family AHML_21055 PF07702 UTRA domain AHML_21070 PF00528 Binding-protein-dependent transport system inner membrane component AHML_21080 PF08402 TOBE domain AHML_21080 PF00005 ABC transporter AHML_21090 PF17158 Membrane-associated sensor, integral membrane domain AHML_21090 PF00990 Diguanylate cyclase, GGDEF domain AHML_21110 PF00583 Acetyltransferase (GNAT) family AHML_21115 PF00199 Catalase AHML_21115 PF06628 Catalase-related immune-responsive AHML_21140 PF00293 NUDIX domain AHML_21145 PF01594 AI-2E family transporter AHML_21150 PF00106 short chain dehydrogenase AHML_21155 PF04371 Porphyromonas-type peptidyl-arginine deiminase AHML_21160 PF03466 LysR substrate binding domain AHML_21160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_21165 PF00158 Sigma-54 interaction domain AHML_21165 PF02954 Bacterial regulatory protein, Fis family AHML_21165 PF00989 PAS fold AHML_21170 PF00465 Iron-containing alcohol dehydrogenase AHML_21175 PF05524 PEP-utilising enzyme, N-terminal AHML_21175 PF03610 PTS system fructose IIA component AHML_21175 PF00381 PTS HPr component phosphorylation site AHML_21175 PF00391 PEP-utilising enzyme, mobile domain AHML_21180 PF02734 DAK2 domain AHML_21185 PF02733 Dak1 domain AHML_21190 PF00860 Permease family AHML_21205 PF03144 Elongation factor Tu domain 2 AHML_21205 PF03143 Elongation factor Tu C-terminal domain AHML_21205 PF00009 Elongation factor Tu GTP binding domain AHML_21210 PF03144 Elongation factor Tu domain 2 AHML_21210 PF00009 Elongation factor Tu GTP binding domain AHML_21210 PF03764 Elongation factor G, domain IV AHML_21210 PF00679 Elongation factor G C-terminus AHML_21210 PF14492 Elongation Factor G, domain II AHML_21215 PF00177 Ribosomal protein S7p/S5e AHML_21220 PF00164 Ribosomal protein S12/S23 AHML_21225 PF04077 DsrH like protein AHML_21230 PF02635 DsrE/DsrF-like family AHML_21235 PF02635 DsrE/DsrF-like family AHML_21240 PF01042 Endoribonuclease L-PSP AHML_21245 PF13309 HTH domain AHML_21245 PF08348 YheO-like PAS domain AHML_21255 PF04983 RNA polymerase Rpb1, domain 3 AHML_21255 PF04998 RNA polymerase Rpb1, domain 5 AHML_21255 PF05000 RNA polymerase Rpb1, domain 4 AHML_21255 PF04997 RNA polymerase Rpb1, domain 1 AHML_21255 PF00623 RNA polymerase Rpb1, domain 2 AHML_21260 PF04560 RNA polymerase Rpb2, domain 7 AHML_21260 PF00562 RNA polymerase Rpb2, domain 6 AHML_21260 PF10385 RNA polymerase beta subunit external 1 domain AHML_21260 PF04565 RNA polymerase Rpb2, domain 3 AHML_21260 PF04561 RNA polymerase Rpb2, domain 2 AHML_21260 PF04563 RNA polymerase beta subunit AHML_21265 PF16320 Ribosomal protein L7/L12 dimerisation domain AHML_21265 PF00542 Ribosomal protein L7/L12 C-terminal domain AHML_21270 PF00466 Ribosomal protein L10 AHML_21275 PF00687 Ribosomal protein L1p/L10e family AHML_21280 PF00298 Ribosomal protein L11, RNA binding domain AHML_21280 PF03946 Ribosomal protein L11, N-terminal domain AHML_21285 PF02357 Transcription termination factor nusG AHML_21285 PF00467 KOW motif AHML_21290 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AHML_21295 PF00009 Elongation factor Tu GTP binding domain AHML_21295 PF03144 Elongation factor Tu domain 2 AHML_21295 PF03143 Elongation factor Tu C-terminal domain AHML_21300 PF00485 Phosphoribulokinase / Uridine kinase family AHML_21305 PF08279 HTH domain AHML_21305 PF03099 Biotin/lipoate A/B protein ligase family AHML_21305 PF02237 Biotin protein ligase C terminal domain AHML_21310 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AHML_21310 PF01565 FAD binding domain AHML_21315 PF02080 TrkA-C domain AHML_21315 PF02254 TrkA-N domain AHML_21320 PF02386 Cation transport protein AHML_21325 PF12833 Helix-turn-helix domain AHML_21325 PF12852 Cupin AHML_21340 PF01751 Toprim domain AHML_21340 PF01131 DNA topoisomerase AHML_21345 PF03264 NapC/NirT cytochrome c family, N-terminal region AHML_21350 PF01568 Molydopterin dinucleotide binding domain AHML_21350 PF00384 Molybdopterin oxidoreductase AHML_21350 PF18364 Molybdopterin oxidoreductase N-terminal domain AHML_21360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_21360 PF08918 PhoQ Sensor AHML_21365 PF00486 Transcriptional regulatory protein, C terminal AHML_21365 PF00072 Response regulator receiver domain AHML_21380 PF01794 Ferric reductase like transmembrane component AHML_21385 PF00174 Oxidoreductase molybdopterin binding domain AHML_21390 PF06496 Protein of unknown function (DUF1097) AHML_21395 PF00158 Sigma-54 interaction domain AHML_21395 PF00072 Response regulator receiver domain AHML_21405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_21405 PF00512 His Kinase A (phospho-acceptor) domain AHML_21420 PF00478 IMP dehydrogenase / GMP reductase domain AHML_21420 PF00571 CBS domain AHML_21425 PF10063 Uncharacterized integral membrane protein (DUF2301) AHML_21435 PF01037 Lrp/AsnC ligand binding domain AHML_21440 PF03590 Aspartate-ammonia ligase AHML_21450 PF17871 AAA lid domain AHML_21450 PF10431 C-terminal, D2-small domain, of ClpB protein AHML_21450 PF07724 AAA domain (Cdc48 subfamily) AHML_21450 PF00004 ATPase family associated with various cellular activities (AAA) AHML_21450 PF02861 Clp amino terminal domain, pathogenicity island component AHML_21460 PF00849 RNA pseudouridylate synthase AHML_21460 PF01479 S4 domain AHML_21465 PF13525 Outer membrane lipoprotein AHML_21470 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_21470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHML_21475 PF00375 Sodium:dicarboxylate symporter family AHML_21480 PF03313 Serine dehydratase alpha chain AHML_21485 PF13309 HTH domain AHML_21485 PF08348 YheO-like PAS domain AHML_21495 PF02233 NAD(P) transhydrogenase beta subunit AHML_21500 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AHML_21500 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AHML_21500 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AHML_21505 PF00465 Iron-containing alcohol dehydrogenase AHML_21510 PF06719 AraC-type transcriptional regulator N-terminus AHML_21510 PF12833 Helix-turn-helix domain AHML_21515 PF08212 Lipocalin-like domain AHML_21520 PF02743 Cache domain AHML_21520 PF00672 HAMP domain AHML_21520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_21525 PF02666 Phosphatidylserine decarboxylase AHML_21535 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AHML_21535 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AHML_21540 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AHML_21540 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AHML_21545 PF01316 Arginine repressor, DNA binding domain AHML_21545 PF02863 Arginine repressor, C-terminal domain AHML_21550 PF03606 C4-dicarboxylate anaerobic carrier AHML_21555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AHML_21555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AHML_21560 PF00696 Amino acid kinase family AHML_21585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_21585 PF00672 HAMP domain AHML_21585 PF02743 Cache domain AHML_21590 PF02653 Branched-chain amino acid transport system / permease component AHML_21595 PF00005 ABC transporter AHML_21600 PF13407 Periplasmic binding protein domain AHML_21605 PF02837 Glycosyl hydrolases family 2, sugar binding domain AHML_21605 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AHML_21605 PF00703 Glycosyl hydrolases family 2 AHML_21605 PF16353 Domain of unknown function(DUF4981) AHML_21605 PF02929 Beta galactosidase small chain AHML_21610 PF00356 Bacterial regulatory proteins, lacI family AHML_21615 PF16363 GDP-mannose 4,6 dehydratase AHML_21620 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AHML_21620 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AHML_21625 PF08544 GHMP kinases C terminal AHML_21625 PF10509 Galactokinase galactose-binding signature AHML_21625 PF00288 GHMP kinases N terminal domain AHML_21630 PF01263 Aldose 1-epimerase AHML_21635 PF00248 Aldo/keto reductase family AHML_21640 PF02673 Bacitracin resistance protein BacA AHML_21645 PF12973 ChrR Cupin-like domain AHML_21650 PF04545 Sigma-70, region 4 AHML_21650 PF04542 Sigma-70 region 2 AHML_21660 PF03485 Arginyl tRNA synthetase N terminal domain AHML_21660 PF00750 tRNA synthetases class I (R) AHML_21660 PF05746 DALR anticodon binding domain AHML_21670 PF00227 Proteasome subunit AHML_21675 PF00004 ATPase family associated with various cellular activities (AAA) AHML_21675 PF07724 AAA domain (Cdc48 subfamily) AHML_21675 PF10431 C-terminal, D2-small domain, of ClpB protein AHML_21680 PF07690 Major Facilitator Superfamily AHML_21685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHML_21685 PF03466 LysR substrate binding domain AHML_21690 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHML_21690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHML_21690 PF04324 BFD-like [2Fe-2S] binding domain AHML_21690 PF18267 Rubredoxin NAD+ reductase C-terminal domain AHML_21690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHML_21700 PF13806 Rieske-like [2Fe-2S] domain AHML_21705 PF01226 Formate/nitrite transporter AHML_21710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHML_21710 PF14824 Sirohaem biosynthesis protein central AHML_21710 PF10414 Sirohaem synthase dimerisation region AHML_21715 PF00571 CBS domain AHML_21715 PF01769 Divalent cation transporter AHML_21715 PF03448 MgtE intracellular N domain AHML_21720 PF00672 HAMP domain AHML_21720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHML_21725 PF03737 Aldolase/RraA AHML_21730 PF02592 Putative vitamin uptake transporter AHML_21740 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AHML_21745 PF00034 Cytochrome c AHML_21750 PF00570 HRDC domain AHML_21750 PF00270 DEAD/DEAH box helicase AHML_21750 PF09382 RQC domain AHML_21750 PF16124 RecQ zinc-binding AHML_21750 PF00271 Helicase conserved C-terminal domain AHML_21755 PF03061 Thioesterase superfamily AHML_21765 PF03475 3-alpha domain AHML_21765 PF03473 MOSC domain AHML_21770 PF00528 Binding-protein-dependent transport system inner membrane component AHML_21775 PF00528 Binding-protein-dependent transport system inner membrane component AHML_21780 PF00005 ABC transporter AHML_21780 PF08402 TOBE domain AHML_21785 PF13416 Bacterial extracellular solute-binding protein AHML_21790 PF13416 Bacterial extracellular solute-binding protein AHML_21795 PF00202 Aminotransferase class-III AHML_21800 PF00120 Glutamine synthetase, catalytic domain AHML_21805 PF01258 Prokaryotic dksA/traR C4-type zinc finger AHML_21820 PF05981 CreA protein AHML_21825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHML_21825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHML_21830 PF00012 Hsp70 protein AHML_21845 PF02903 Alpha amylase, N-terminal ig-like domain AHML_21845 PF00128 Alpha amylase, catalytic domain AHML_21860 PF05958 tRNA (Uracil-5-)-methyltransferase AHML_21865 PF00486 Transcriptional regulatory protein, C terminal AHML_21865 PF00072 Response regulator receiver domain AHML_21870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_21870 PF00672 HAMP domain AHML_21870 PF00512 His Kinase A (phospho-acceptor) domain AHML_21880 PF03949 Malic enzyme, NAD binding domain AHML_21880 PF00390 Malic enzyme, N-terminal domain AHML_21885 PF11066 Protein of unknown function (DUF2867) AHML_21885 PF13460 NAD(P)H-binding AHML_21890 PF01197 Ribosomal protein L31 AHML_21895 PF18074 Primosomal protein N C-terminal domain AHML_21895 PF17764 3′ DNA-binding domain (3′BD) AHML_21895 PF00271 Helicase conserved C-terminal domain AHML_21895 PF00270 DEAD/DEAH box helicase AHML_21895 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AHML_21905 PF00691 OmpA family AHML_21905 PF01389 OmpA-like transmembrane domain AHML_21910 PF00291 Pyridoxal-phosphate dependent enzyme AHML_21910 PF00585 C-terminal regulatory domain of Threonine dehydratase AHML_21915 PF00920 Dehydratase family AHML_21920 PF01063 Amino-transferase class IV AHML_21930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHML_21930 PF00205 Thiamine pyrophosphate enzyme, central domain AHML_21930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHML_21935 PF01078 Magnesium chelatase, subunit ChlI AHML_21935 PF13335 Magnesium chelatase, subunit ChlI C-terminal AHML_21940 PF01553 Acyltransferase AHML_21945 PF01553 Acyltransferase AHML_21950 PF04463 Protein of unknown function (DUF523) AHML_21960 PF00857 Isochorismatase family AHML_21965 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AHML_21965 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AHML_21975 PF00005 ABC transporter AHML_21980 PF00528 Binding-protein-dependent transport system inner membrane component AHML_21985 PF01323 DSBA-like thioredoxin domain AHML_21990 PF01636 Phosphotransferase enzyme family AHML_21995 PF12801 4Fe-4S binding domain AHML_21995 PF13746 4Fe-4S dicluster domain AHML_21995 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AHML_22000 PF06288 Protein of unknown function (DUF1040) AHML_22005 PF00563 EAL domain AHML_22005 PF01590 GAF domain AHML_22005 PF00990 Diguanylate cyclase, GGDEF domain AHML_22005 PF00360 Phytochrome region AHML_22010 PF09278 MerR, DNA binding AHML_22010 PF00376 MerR family regulatory protein AHML_22015 PF00403 Heavy-metal-associated domain AHML_22020 PF00156 Phosphoribosyl transferase domain AHML_22025 PF01138 3' exoribonuclease family, domain 1 AHML_22025 PF03725 3' exoribonuclease family, domain 2 AHML_22030 PF03755 YicC-like family, N-terminal region AHML_22030 PF08340 Domain of unknown function (DUF1732) AHML_22050 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) AHML_22065 PF01370 NAD dependent epimerase/dehydratase family AHML_22070 PF08360 QacR-like protein, C-terminal region AHML_22070 PF00440 Bacterial regulatory proteins, tetR family AHML_22075 PF00155 Aminotransferase class I and II AHML_22080 PF00107 Zinc-binding dehydrogenase AHML_22080 PF08240 Alcohol dehydrogenase GroES-like domain AHML_22085 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AHML_22090 PF00990 Diguanylate cyclase, GGDEF domain AHML_22090 PF03707 Bacterial signalling protein N terminal repeat AHML_22090 PF00563 EAL domain AHML_22095 PF13361 UvrD-like helicase C-terminal domain AHML_22095 PF00580 UvrD/REP helicase N-terminal domain AHML_22100 PF00266 Aminotransferase class-V AHML_22105 PF02657 Fe-S metabolism associated domain AHML_22110 PF00899 ThiF family AHML_22120 PF03544 Gram-negative bacterial TonB protein C-terminal AHML_22125 PF02472 Biopolymer transport protein ExbD/TolR AHML_22130 PF01618 MotA/TolQ/ExbB proton channel family AHML_22135 PF01618 MotA/TolQ/ExbB proton channel family AHML_22145 PF03472 Autoinducer binding domain AHML_22145 PF00196 Bacterial regulatory proteins, luxR family AHML_22150 PF01380 SIS domain AHML_22155 PF00455 DeoR C terminal sensor domain AHML_22155 PF08220 DeoR-like helix-turn-helix domain AHML_22160 PF00486 Transcriptional regulatory protein, C terminal AHML_22160 PF00072 Response regulator receiver domain AHML_22165 PF00512 His Kinase A (phospho-acceptor) domain AHML_22165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHML_22165 PF00672 HAMP domain AHML_22170 PF00905 Penicillin binding protein transpeptidase domain AHML_22175 PF06123 Inner membrane protein CreD AHML_22180 PF00132 Bacterial transferase hexapeptide (six repeats) AHML_22180 PF14602 Hexapeptide repeat of succinyl-transferase AHML_22180 PF12804 MobA-like NTP transferase domain AHML_22185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AHML_22185 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AHML_22190 PF02874 ATP synthase alpha/beta family, beta-barrel domain AHML_22190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AHML_22195 PF00231 ATP synthase AHML_22200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AHML_22200 PF02874 ATP synthase alpha/beta family, beta-barrel domain AHML_22200 PF00306 ATP synthase alpha/beta chain, C terminal domain AHML_22205 PF00213 ATP synthase delta (OSCP) subunit AHML_22210 PF00430 ATP synthase B/B' CF(0) AHML_22215 PF00137 ATP synthase subunit C AHML_22220 PF00119 ATP synthase A chain AHML_22230 PF17762 HTH domain found in ParB protein AHML_22230 PF02195 ParB-like nuclease domain AHML_22235 PF13614 AAA domain AHML_22240 PF02527 rRNA small subunit methyltransferase G AHML_22245 PF01134 Glucose inhibited division protein A AHML_22245 PF13932 GidA associated domain AHML_22250 PF00258 Flavodoxin AHML_22255 PF00593 TonB dependent receptor AHML_22255 PF07715 TonB-dependent Receptor Plug Domain AHML_22260 PF00005 ABC transporter AHML_22265 PF00005 ABC transporter AHML_22275 PF01032 FecCD transport family AHML_22280 PF10396 GTP-binding protein TrmE N-terminus AHML_22280 PF12631 MnmE helical domain AHML_22280 PF01926 50S ribosome-binding GTPase AHML_22285 PF02096 60Kd inner membrane protein AHML_22285 PF14849 YidC periplasmic domain AHML_22290 PF01809 Putative membrane protein insertion efficiency factor AHML_22295 PF00825 Ribonuclease P AHML_22300 PF00468 Ribosomal protein L34 AHML_22310 PF00528 Binding-protein-dependent transport system inner membrane component AHML_22315 PF00497 Bacterial extracellular solute-binding proteins, family 3